cartVersion cartVersion cartVersion cartVersion 0 -3 0 0 0 0 0 0 0 0 0 cartVersion cartVersion cartVersion 0 cartVersion 3 dbSnp153Composite dbSNP 153 bed 6 + Short Genetic Variants from dbSNP release 153 3 0.08 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$

Description

\

\ This track shows short genetic variants\ (up to approximately 50 base pairs) from\ dbSNP\ build 153:\ single-nucleotide variants (SNVs),\ small insertions, deletions, and complex deletion/insertions (indels),\ relative to the reference genome assembly.\ Most variants in dbSNP are rare, not true polymorphisms,\ and some variants are known to be pathogenic.\

\ For hg38 (GRCh38), approximately 667 million distinct variants\ (RefSNP clusters with rs# ids)\ have been mapped to more than 702 million genomic locations\ including alternate haplotype and fix patch sequences.\ dbSNP remapped variants from hg38 to hg19 (GRCh37);\ approximately 658 million distinct variants were mapped to\ more than 683 million genomic locations\ including alternate haplotype and fix patch sequences (not\ all of which are included in UCSC's hg19).\

\

\ This track includes four subtracks of variants:\

\

\

\ A fifth subtrack highlights coordinate ranges to which dbSNP mapped a variant but with genomic\ coordinates that are not internally consistent, i.e. different coordinate ranges were provided\ when describing different alleles. This can occur due to a bug with mapping variants from one\ assembly sequence to another when there is an indel difference between the assembly sequences:\

\

\ \

Interpreting and Configuring the Graphical Display

\

\ SNVs and pure deletions are displayed as boxes covering the affected base(s).\ Pure insertions are drawn as single-pixel tickmarks between\ the base before and the base after the insertion.\

\ Insertions and/or deletions in repetitive regions may be represented by a half-height box\ showing uncertainty in placement, followed by a full-height box showing the number of deleted\ bases, or a full-height tickmark to indicate an insertion.\ When an insertion or deletion falls in a repetitive region, the placement may be ambiguous.\ For example, if the reference genome contains "TAAAG" but some\ individuals have "TAAG" at the same location, then the variant is a deletion of a single\ A relative to the reference genome.\ However, which A was deleted? There is no way to tell whether the first, second or third A\ was removed.\ Different variant mapping tools may place the deletion at different bases in the reference genome.\ To reduce errors in merging variant calls made with different left vs. right biases,\ dbSNP made a major change in its representation of deletion/insertion variants in build 152.\ Now, instead of assigning a single-base genomic location at one of the A's,\ dbSNP expands the coordinates to encompass the whole repetitive region,\ so the variant is represented as a deletion of 3 A's combined with an insertion of 2 A's.\ In the track display, there will be a half-height box covering the first two A's,\ followed by a full-height box covering the third A, to show a net loss of one base\ but an uncertain placement within the three A's.\

\

\ Variants are colored according to functional effect on genes annotated by dbSNP:\

\ \

Protein-altering variants and splice site variants are\ red.\
Synonymous codon variants are\ green.\
\ Non-coding transcript or Untranslated Region (UTR) variants are\ blue.\

\

\ On the track controls page, several variant properties can be included or excluded from\ the item labels:\ rs# identifier assigned by dbSNP,\ reference/alternate alleles,\ major/minor alleles (when available) and\ minor allele frequency (when available).\ Allele frequencies are reported independently by twelve projects\ (some of which may have overlapping sets of samples):\

\ The project from which to take allele frequency data defaults to 1000 Genomes\ but can be set to any of those projects.\

\

\ Using the track controls, variants can be filtered by\ \

\

\ \ \

Interesting and anomalous conditions noted by UCSC

\

\ While processing the information downloaded from dbSNP,\ UCSC annotates some properties of interest.\ These are noted on the item details page,\ and may be useful to include or exclude affected variants.\

\ Some are purely informational:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
keyword in data file (dbSnp153.bb)# in hg19# in hg38description
clinvar454678453996Variant is in ClinVar.
clinvarBenign143864143736Variant is in ClinVar with clinical significance of benign and/or likely benign.
clinvarConflicting79327950Variant is in ClinVar with reports of both benign and pathogenic significance.
clinvarPathogenic9624295262Variant is in ClinVar with clinical significance of pathogenic and/or likely pathogenic.
commonAll1218452112438655Variant is "common", i.e. has a Minor Allele Frequency of at least 1% in all\ projects reporting frequencies.
commonSome2054119020902944Variant is "common", i.e. has a Minor Allele Frequency of at least 1% in some, but not all,\ projects reporting frequencies.
diffMajor13778311399109Different frequency sources have different major alleles.
overlapDiffClass107015341110007682This variant overlaps another variant with a different type/class.
overlapSameClass1691523917291289This variant overlaps another with the same type/class but different start/end.
rareAll662601770681696398Variant is "rare", i.e. has a Minor Allele Frequency of less than 1%\ in all projects reporting frequencies, or has no frequency data.
rareSome670958439690160687Variant is "rare", i.e. has a Minor Allele Frequency of less than 1%\ in some, but not all, projects reporting frequencies, or has no frequency data.
revStrand38137024532511Alleles are displayed on the + strand at the current position.\ dbSNP's alleles are displayed on the + strand of a different assembly sequence,\ so dbSNP's variant page shows alleles that are reverse-complemented with respect to\ the alleles displayed above.
\

\ while others may indicate that the reference genome contains a rare variant or sequencing issue:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
keyword in data file (dbSnp153.bb)# in hg19# in hg38description
refIsAmbiguous101111The reference genome allele contains an IUPAC ambiguous base\ (e.g. 'R' for 'A or G', or 'N' for 'any base').
refIsMinor32721163360435The reference genome allele is not the major allele in at least one project.
refIsRare136547160827The reference genome allele is rare (i.e. allele frequency < 1%).
refIsSingleton3783250927The reference genome allele has never been observed in a population sequencing project\ reporting frequencies.
refMismatch433The reference genome allele reported by dbSNP differs from the GenBank assembly sequence.\ This is very rare and in all cases observed so far, the GenBank assembly has an 'N'\ while the RefSeq assembly used by dbSNP has a less ambiguous character such as 'R'.
\

\ and others may indicate an anomaly or problem with the variant data:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
keyword in data file (dbSnp153.bb)# in hg19# in hg38description
altIsAmbiguous1075510888At least one alternate allele contains an IUPAC ambiguous base (e.g. 'R' for 'A or G').\ For alleles containing more than one ambiguous base, this may create a\ combinatoric explosion of possible alleles.
classMismatch59986216Variation class/type is inconsistent with alleles mapped to this genome assembly.
clusterError114826128306This variant has the same start, end and class as another variant;\ they probably should have been merged into one variant.
freqIncomplete39224673At least one project reported counts for only one allele which implies that at\ least one allele is missing from the report;\ that project's frequency data are ignored.
freqIsAmbiguous76567756At least one allele reported by at least one project that reports frequencies\ contains an IUPAC ambiguous base.
freqNotMapped26856590At least one project reported allele frequencies relative to a different assembly;\ However, dbSNP does not include a mapping of this variant to that assembly, which\ implies a problem with mapping the variant across assemblies. The mapping on this\ assembly may have an issue; evaluate carefully vs. original submissions, which you\ can view by clicking through to dbSNP above.
freqNotRefAlt1769432170At least one allele reported by at least one project that reports frequencies\ does not match any of the reference or alternate alleles listed by dbSNP.
multiMap562180132123This variant has been mapped to more than one distinct genomic location.
otherMapErr114095204219At least one other mapping of this variant has erroneous coordinates.\ The mapping(s) with erroneous coordinates are excluded from this track\ and are included in the Map Err subtrack. Sometimes despite this mapping\ having legal coordinates, there may still be an issue with this mapping's\ coordinates and alleles; you may want to click through to dbSNP to compare\ the initial submission's coordinates and alleles.\ In hg19, 55454 distinct rsIDs are affected; in hg38, 86636.\
\ \ \

Data Sources and Methods

\

\ dbSNP has collected genetic variant reports from researchers worldwide for \ more than 20 years.\ Since the advent of next-generation sequencing methods and the population sequencing efforts\ that they enable, dbSNP has grown exponentially, requiring a new data schema, computational pipeline,\ web infrastructure, and download files.\ (Holmes et al.)\ The same challenges of exponential growth affected UCSC's presentation of dbSNP variants,\ so we have taken the opportunity to change our internal representation and import pipeline.\ Most notably, flanking sequences are no longer provided by dbSNP,\ because most submissions have been genomic variant calls in VCF format as opposed to\ independent sequences.\

\

\ We downloaded JSON files available from dbSNP at\ ftp://ftp.ncbi.nlm.nih.gov/snp/archive/b153/JSON/,\ extracted a subset of the information about each variant, and collated\ it into a bigBed file using the\ bigDbSnp.as schema with the information\ necessary for filtering and displaying the variants,\ as well as a separate file containing more detailed information to be\ displayed on each variant's details page\ (dbSnpDetails.as schema).\ \

Data Access

\

\ Note: It is not recommeneded to use LiftOver to convert SNPs between assemblies,\ and more information about how to convert SNPs between assemblies can be found on the following\ FAQ entry.

\

\ Since dbSNP has grown to include approximately 700 million variants, the size of the All dbSNP (153)\ subtrack can cause the\ Table Browser and\ Data Integrator\ to time out, leading to a blank page or truncated output,\ unless queries are restricted to a chromosomal region, to particular defined regions, to a specific set \ of rs# IDs (which can be pasted/uploaded into the Table Browser),\ or to one of the subset tracks such as Common (~15 million variants) or ClinVar (~0.5M variants).\

\ For automated analysis, the track data files can be downloaded from the downloads server for\ hg19 and\ hg38.\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
fileformatsubtrack
dbSnp153.bbhg19hg38bigDbSnp (bigBed4+13)All dbSNP (153)
dbSnp153ClinVar.bbhg19hg38bigDbSnp (bigBed4+13)ClinVar dbSNP (153)
dbSnp153Common.bbhg19hg38bigDbSnp (bigBed4+13)Common dbSNP (153)
dbSnp153Mult.bbhg19hg38bigDbSnp (bigBed4+13)Mult. dbSNP (153)
dbSnp153BadCoords.bbhg19hg38bigBed4Map Err (153)
\ dbSnp153Details.tab.gz\ gzip-compressed tab-separated textDetailed variant properties, independent of genome assembly version
\

\

\ Several utilities for working with bigBed-formatted binary files can be downloaded\ here.\ Run a utility with no arguments to see a brief description of the utility and its options.\

\

\ \

Example: retrieve all variants in the region chr1:200001-200400

\ \ 
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/snp/dbSnp153.bb -chrom=chr1 -start=200000 -end=200400 stdout
\ \

Example: retrieve variant rs6657048

\ \ 
bigBedNamedItems dbSnp153.bb rs6657048 stdout
\ \

Example: retrieve all variants with rs# IDs in file myIds.txt

\ \ 
bigBedNamedItems -nameFile dbSnp153.bb myIds.txt dbSnp153.myIds.bed
\ \

\ The columns in the bigDbSnp/bigBed files and dbSnp153Details.tab.gz file are described in\ bigDbSnp.as and\ dbSnpDetails.as respectively.\ For columns that contain lists of allele frequency data, the order of projects\ providing the data listed is as follows:\

    \
  1. 1000Genomes
    2. \
  2. GnomAD exomes
    3. \
  3. TOPMED
    4. \
  4. PAGE STUDY
    5. \
  5. GnomAD genomes
    6. \
  6. GoESP
    7. \
  7. Estonian
    8. \
  8. ALSPAC
    9. \
  9. TWINSUK
    10. \
  10. NorthernSweden
    11. \
  11. Vietnamese
    12. \
\

\ UCSC also has an\ API\ that can be used to retrieve values from a particular chromosome range.\

\ A list of rs# IDs can be pasted/uploaded in the\ Variant Annotation Integrator\ tool to find out which genes (if any) the variants are located in,\ as well as functional effect such as intron, coding-synonymous, missense, frameshift, etc.\

\ Please refer to our searchable\ mailing list archives\ for more questions and example queries, or our\ Data Access FAQ\ for more information.\

\ \

References

\ \

\ Holmes JB, Moyer E, Phan L, Maglott D, Kattman B.\ \ SPDI: Data Model for Variants and Applications at NCBI.\ Bioinformatics. 2019 Nov 18;.\ PMID: 31738401\

\

\ Sayers EW, Agarwala R, Bolton EE, Brister JR, Canese K, Clark K, Connor R, Fiorini N, Funk K,\ Hefferon T et al.\ \ Database resources of the National Center for Biotechnology Information.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D23-D28.\ PMID: 30395293; PMC: PMC6323993\

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122;\ PMC: PMC29783\

\ \ varRep 1 compositeTrack on\ group varRep\ html ../dbSnp153Composite\ longLabel Short Genetic Variants from dbSNP release 153\ maxWindowCoverage 4000000\ parent dbSnpArchive on\ priority 0.08\ shortLabel dbSNP 153\ subGroup1 view Views variants=Variants errs=Mapping_Errors\ track dbSnp153Composite\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/snp/$$\ urlLabel dbSNP:\ visibility pack\ dbSnp153ViewErrs Mapping Errors bed 6 + Short Genetic Variants from dbSNP release 153 1 0.08 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 longLabel Short Genetic Variants from dbSNP release 153\ parent dbSnp153Composite\ shortLabel Mapping Errors\ track dbSnp153ViewErrs\ view errs\ visibility dense\ dbSnp153ViewVariants Variants bigDbSnp Short Genetic Variants from dbSNP release 153 1 0.08 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 classFilterType multipleListOr\ classFilterValues snv,mnv,ins,del,delins,identity\ detailsTabUrls _dataOffset=/gbdb/hgFixed/dbSnp/dbSnp153Details.tab.gz\ freqSourceOrder 1000Genomes,GnomAD_exomes,TOPMED,ExAC,PAGE_STUDY,GnomAD,GoESP,Estonian,ALSPAC,TWINSUK,NorthernSweden,Vietnamese\ longLabel Short Genetic Variants from dbSNP release 153\ maxFuncImpactFilterLabel Greatest functional impact on gene\ maxFuncImpactFilterType multipleListOr\ maxFuncImpactFilterValues 0|(not annotated),0865|frameshift,1587|stop_gained,1574|splice_acceptor_variant,1575|splice_donor_variant,1821|inframe_insertion,1583|missense_variant,1590|terminator_codon_variant,1819|synonymous_variant,1580|coding_sequence_variant,1623|5_prime_UTR_variant,1624|3_prime_UTR_variant,1619|nc_transcript_variant,2153|genic_upstream_transcript_variant,1986|upstream_transcript_variant,2152|genic_downstream_transcript_variant,1987|downstream_transcript_variant,1627|intron_variant\ parent dbSnp153Composite\ shortLabel Variants\ showCfg on\ track dbSnp153ViewVariants\ type bigDbSnp\ ucscNotesFilterType multipleListOr\ ucscNotesFilterValues altIsAmbiguous|Alternate allele contains IUPAC ambiguous base(s),classMismatch|Variant class/type is inconsistent with allele sizes,clinvar|Present in ClinVar,clinvarBenign|ClinVar significance of benign and/or likely benign,clinvarConflicting|ClinVar includes both benign and pathogenic reports,clinvarPathogenic|ClinVar significance of pathogenic and/or likely pathogenic,clusterError|Overlaps a variant with the same type/class and position,commonAll|MAF >= 1% in all projects that report frequencies,commonSome|MAF >= 1% in at least one project that reports frequencies,diffMajor|Different projects report different major alleles,freqIncomplete|Frequency reported with incomplete allele data,freqIsAmbiguous|Frequency reported for allele with IUPAC ambiguous base(s),freqNotMapped|Frequency reported on different assembly but not mapped by dbSNP,freqNotRefAlt|Reference genome allele is not major allele in at least one project,multiMap|Variant is placed in more than one genomic position,otherMapErr|Another mapping of this variant has illegal coords (indel mapping error?),overlapDiffClass|Variant overlaps other variant(s) of different type/class,overlapSameClass|Variant overlaps other variant(s) of same type/class but different position,rareAll|MAF < 1% in all projects that report frequencies (or no frequency data),rareSome|MAF < 1% in at least one project that reports frequencies,refIsAmbiguous|Reference genome allele contains IUPAC ambiguous base(s),refIsMinor|Reference genome allele is minor allele in at least one project that reports frequencies,refIsRare|Reference genome allele frequency is <1% in at least one project,refIsSingleton|Reference genome frequency is 0 in all projects that report frequencies,refMismatch|Reference allele mismatches reference genome sequence,revStrand|Variant maps to opposite strand relative to dbSNP's preferred top-level placement\ view variants\ visibility dense\ snp151Common Common SNPs(151) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 151) Found in >= 1% of Samples 0 0.09 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 151, available from\ ftp.ncbi.nlm.nih.gov/snp.\ Only SNPs that have a minor allele frequency (MAF) of at least 1% and\ are mapped to a single location in the reference genome assembly are\ included in this subset. Frequency data are not available for all SNPs,\ so this subset is incomplete.\ Allele counts from all submissions that include frequency data are combined\ when determining MAF, so for example the allele counts from\ the 1000 Genomes Project and an independent submitter may be combined for the\ same variant.\

\

\ dbSNP provides\ download files\ in the\ Variant Call Format (VCF)\ that include a "COMMON" flag in the INFO column. That is determined by a different method,\ and is generally a superset of the UCSC Common set.\ dbSNP uses frequency data from the\ 1000 Genomes Project\ only, and considers a variant COMMON if it has a MAF of at least 0.01 in any of the five\ super-populations:\

\ In build 151, dbSNP marks approximately 38M variants as COMMON; 23M of those have a\ global MAF < 0.01. The remainder should be in agreement with UCSC's Common subset.\

\

\ The selection of SNPs with a minor allele frequency of 1% or greater\ is an attempt to identify variants that appear to be reasonably common\ in the general population. Taken as a set, common variants should be\ less likely to be associated with severe genetic diseases due to the\ effects of natural selection,\ following the view that deleterious variants are not likely to become\ common in the population.\ However, the significance of any particular variant should be interpreted\ only by a trained medical geneticist using all available information.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/database/data/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh38p7/database/data/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh38p7/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp151*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ \ GRCh37/hg19, GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro5\ chimpOrangMacOrthoTable snp151OrthoPt5Pa2Rm8\ codingAnnotations snp151CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp151Common\ longLabel Simple Nucleotide Polymorphisms (dbSNP 151) Found in >= 1% of Samples\ macaqueDb rheMac8\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.09\ shortLabel Common SNPs(151)\ snpExceptionDesc snp151ExceptionDesc\ snpSeq snp151Seq\ track snp151Common\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp151 All SNPs(151) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 151) 0 0.1 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 151, available from\ ftp.ncbi.nlm.nih.gov/snp.\

\

\ Three tracks contain subsets of the items in this track:\

\

\

\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic\ locations will be omitted from display. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/database/data/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh38p7/database/data/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh38p7/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp151*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ \ GRCh37/hg19, GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro5\ chimpOrangMacOrthoTable snp151OrthoPt5Pa2Rm8\ codingAnnotations snp151CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp151\ longLabel Simple Nucleotide Polymorphisms (dbSNP 151)\ macaqueDb rheMac8\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.1\ shortLabel All SNPs(151)\ track snp151\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp151Flagged Flagged SNPs(151) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 151) Flagged by dbSNP as Clinically Assoc 0 0.1 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 151, available from\ ftp.ncbi.nlm.nih.gov/snp.\ Only SNPs flagged as clinically associated by dbSNP,\ mapped to a single location in the reference genome assembly, and\ not known to have a minor allele frequency of at\ least 1%, are included in this subset.\ Frequency data are not available for all SNPs, so this subset probably\ includes some SNPs whose true minor allele frequency is 1% or greater.\

\

\ The significance of any particular variant in this track should be\ interpreted only by a trained medical geneticist using all available\ information. For example, some variants are included in this track\ because of their inclusion in a Locus-Specific Database (LSDB) or\ mention in OMIM, but are not thought to be disease-causing, so\ inclusion of a variant in this track is not necessarily an indicator\ of risk. Again, all available information must be carefully considered\ by a qualified professional.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/database/data/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh38p7/database/data/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh38p7/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp151*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ \ GRCh37/hg19, GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro5\ chimpOrangMacOrthoTable snp151OrthoPt5Pa2Rm8\ codingAnnotations snp151CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp151Flagged\ longLabel Simple Nucleotide Polymorphisms (dbSNP 151) Flagged by dbSNP as Clinically Assoc\ macaqueDb rheMac8\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.1\ shortLabel Flagged SNPs(151)\ snpExceptionDesc snp151ExceptionDesc\ snpSeq snp151Seq\ track snp151Flagged\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp151Mult Mult. SNPs(151) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 151) That Map to Multiple Genomic Loci 0 0.1 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 151, available from\ ftp.ncbi.nlm.nih.gov/snp.\

\

\ Three tracks contain subsets of the items in this track:\

\

\

\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic\ locations will be omitted from display. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/database/data/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh38p7/database/data/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh38p7/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp151*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ \ GRCh37/hg19, GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro5\ chimpOrangMacOrthoTable snp151OrthoPt5Pa2Rm8\ codingAnnotations snp151CodingDbSnp,\ defaultGeneTracks knownGene\ defaultMaxWeight 3\ group varRep\ hapmapPhase III\ html ../snp151\ longLabel Simple Nucleotide Polymorphisms (dbSNP 151) That Map to Multiple Genomic Loci\ macaqueDb rheMac8\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.1\ shortLabel Mult. SNPs(151)\ snpExceptionDesc snp151ExceptionDesc\ snpSeq snp151Seq\ track snp151Mult\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp150 All SNPs(150) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 150) 0 0.2 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 150, available from\ ftp.ncbi.nlm.nih.gov/snp.\

\

\ Three tracks contain subsets of the items in this track:\

\

\

\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic\ locations will be omitted from display. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/database/data/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/database/data/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp150*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro5\ chimpOrangMacOrthoTable snp150OrthoPt5Pa2Rm8\ codingAnnotations snp150CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp150\ longLabel Simple Nucleotide Polymorphisms (dbSNP 150)\ macaqueDb rheMac8\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.2\ shortLabel All SNPs(150)\ track snp150\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp150Common Common SNPs(150) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 150) Found in >= 1% of Samples 0 0.2 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 150, available from\ ftp.ncbi.nlm.nih.gov/snp.\ Only SNPs that have a minor allele frequency (MAF) of at least 1% and\ are mapped to a single location in the reference genome assembly are\ included in this subset. Frequency data are not available for all SNPs,\ so this subset is incomplete.\ Allele counts from all submissions that include frequency data are combined\ when determining MAF, so for example the allele counts from\ the 1000 Genomes Project and an independent submitter may be combined for the\ same variant.\

\

\ dbSNP provides\ download files\ in the\ Variant Call Format (VCF)\ that include a "COMMON" flag in the INFO column. That is determined by a different method,\ and is generally a superset of the UCSC Common set.\ dbSNP uses frequency data from the\ 1000 Genomes Project\ only, and considers a variant COMMON if it has a MAF of at least 0.01 in any of the five\ super-populations:\

\ In build 151 (which has replaced build 150 on the dbSNP web and download site),\ dbSNP marks approximately 38M variants as COMMON; 23M of those have a\ global MAF < 0.01. The remainder should be in agreement with UCSC's Common subset.\

\

\ The selection of SNPs with a minor allele frequency of 1% or greater\ is an attempt to identify variants that appear to be reasonably common\ in the general population. Taken as a set, common variants should be\ less likely to be associated with severe genetic diseases due to the\ effects of natural selection,\ following the view that deleterious variants are not likely to become\ common in the population.\ However, the significance of any particular variant should be interpreted\ only by a trained medical geneticist using all available information.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/database/data/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/database/data/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp150*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro5\ chimpOrangMacOrthoTable snp150OrthoPt5Pa2Rm8\ codingAnnotations snp150CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp150Common\ longLabel Simple Nucleotide Polymorphisms (dbSNP 150) Found in >= 1% of Samples\ macaqueDb rheMac8\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.2\ shortLabel Common SNPs(150)\ snpExceptionDesc snp150ExceptionDesc\ snpSeq snp150Seq\ track snp150Common\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp150Flagged Flagged SNPs(150) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 150) Flagged by dbSNP as Clinically Assoc 0 0.2 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 150, available from\ ftp.ncbi.nlm.nih.gov/snp.\ Only SNPs flagged as clinically associated by dbSNP,\ mapped to a single location in the reference genome assembly, and\ not known to have a minor allele frequency of at\ least 1%, are included in this subset.\ Frequency data are not available for all SNPs, so this subset probably\ includes some SNPs whose true minor allele frequency is 1% or greater.\

\

\ The significance of any particular variant in this track should be\ interpreted only by a trained medical geneticist using all available\ information. For example, some variants are included in this track\ because of their inclusion in a Locus-Specific Database (LSDB) or\ mention in OMIM, but are not thought to be disease-causing, so\ inclusion of a variant in this track is not necessarily an indicator\ of risk. Again, all available information must be carefully considered\ by a qualified professional.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/database/data/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/database/data/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp150*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro5\ chimpOrangMacOrthoTable snp150OrthoPt5Pa2Rm8\ codingAnnotations snp150CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp150Flagged\ longLabel Simple Nucleotide Polymorphisms (dbSNP 150) Flagged by dbSNP as Clinically Assoc\ macaqueDb rheMac8\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.2\ shortLabel Flagged SNPs(150)\ snpExceptionDesc snp150ExceptionDesc\ snpSeq snp150Seq\ track snp150Flagged\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp150Mult Mult. SNPs(150) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 150) That Map to Multiple Genomic Loci 0 0.2 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 150, available from\ ftp.ncbi.nlm.nih.gov/snp.\ Only SNPs that have been mapped to multiple locations in the reference\ genome assembly are included in this subset. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\

\ Since build 149, dbSNP has been filtering out almost all such "SNPs" so\ there are very few items in this track.\

\

\ The default maximum weight for this track is 3,\ unlike the other dbSNP build 150 tracks which have a maximum weight of 1.\ That enables these multiply-mapped SNPs to appear in the display, while\ by default they will not appear in the All SNPs(150) track because of its\ maximum weight filter.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/database/data/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/database/data/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp150*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro5\ chimpOrangMacOrthoTable snp150OrthoPt5Pa2Rm8\ codingAnnotations snp150CodingDbSnp,\ defaultGeneTracks knownGene\ defaultMaxWeight 3\ group varRep\ hapmapPhase III\ html ../snp150Mult\ longLabel Simple Nucleotide Polymorphisms (dbSNP 150) That Map to Multiple Genomic Loci\ macaqueDb rheMac8\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.2\ shortLabel Mult. SNPs(150)\ snpExceptionDesc snp150ExceptionDesc\ snpSeq snp150Seq\ track snp150Mult\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp147 All SNPs(147) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 147) 0 0.4 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 147, available from\ ftp.ncbi.nlm.nih.gov/snp.\

\

\ Three tracks contain subsets of the items in this track:\

\

\

\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic\ locations will be omitted from display. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp147*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp147OrthoPt4Pa2Rm3\ codingAnnotations snp147CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp147\ longLabel Simple Nucleotide Polymorphisms (dbSNP 147)\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.4\ shortLabel All SNPs(147)\ track snp147\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp147Common Common SNPs(147) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 147) Found in >= 1% of Samples 0 0.4 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 147, available from\ ftp.ncbi.nlm.nih.gov/snp.\ Only SNPs that have a minor allele frequency of at least 1% and\ are mapped to a single location in the reference genome assembly are\ included in this subset. Frequency data are not available for all SNPs,\ so this subset is incomplete.\

\

\ The selection of SNPs with a minor allele frequency of 1% or greater\ is an attempt to identify variants that appear to be reasonably common\ in the general population. Taken as a set, common variants should be\ less likely to be associated with severe genetic diseases due to the\ effects of natural selection,\ following the view that deleterious variants are not likely to become\ common in the population.\ However, the significance of any particular variant should be interpreted\ only by a trained medical geneticist using all available information.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp147*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp147OrthoPt4Pa2Rm3\ codingAnnotations snp147CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp147Common\ longLabel Simple Nucleotide Polymorphisms (dbSNP 147) Found in >= 1% of Samples\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.4\ shortLabel Common SNPs(147)\ snpExceptionDesc snp147ExceptionDesc\ snpSeq snp147Seq\ track snp147Common\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp147Flagged Flagged SNPs(147) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 147) Flagged by dbSNP as Clinically Assoc 0 0.4 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 147, available from\ ftp.ncbi.nlm.nih.gov/snp.\ Only SNPs flagged as clinically associated by dbSNP,\ mapped to a single location in the reference genome assembly, and\ not known to have a minor allele frequency of at\ least 1%, are included in this subset.\ Frequency data are not available for all SNPs, so this subset probably\ includes some SNPs whose true minor allele frequency is 1% or greater.\

\

\ The significance of any particular variant in this track should be\ interpreted only by a trained medical geneticist using all available\ information. For example, some variants are included in this track\ because of their inclusion in a Locus-Specific Database (LSDB) or\ mention in OMIM, but are not thought to be disease-causing, so\ inclusion of a variant in this track is not necessarily an indicator\ of risk. Again, all available information must be carefully considered\ by a qualified professional.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp147*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp147OrthoPt4Pa2Rm3\ codingAnnotations snp147CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp147Flagged\ longLabel Simple Nucleotide Polymorphisms (dbSNP 147) Flagged by dbSNP as Clinically Assoc\ macaqueDb rheMac3\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.4\ shortLabel Flagged SNPs(147)\ snpExceptionDesc snp147ExceptionDesc\ snpSeq snp147Seq\ track snp147Flagged\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp147Mult Mult. SNPs(147) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 147) That Map to Multiple Genomic Loci 0 0.4 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 147, available from\ ftp.ncbi.nlm.nih.gov/snp.\ Only SNPs that have been mapped to multiple locations in the reference\ genome assembly are included in this subset. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\

\ The default maximum weight for this track is 3,\ unlike the other dbSNP build 147 tracks which have a maximum weight of 1.\ That enables these multiply-mapped SNPs to appear in the display, while\ by default they will not appear in the All SNPs(147) track because of its\ maximum weight filter.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp147*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp147OrthoPt4Pa2Rm3\ codingAnnotations snp147CodingDbSnp,\ defaultGeneTracks knownGene\ defaultMaxWeight 3\ group varRep\ hapmapPhase III\ html ../snp147Mult\ longLabel Simple Nucleotide Polymorphisms (dbSNP 147) That Map to Multiple Genomic Loci\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.4\ shortLabel Mult. SNPs(147)\ snpExceptionDesc snp147ExceptionDesc\ snpSeq snp147Seq\ track snp147Mult\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp146 All SNPs(146) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 146) 0 0.5 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 146, available from\ ftp.ncbi.nih.gov/snp.\

\

\ Three tracks contain subsets of the items in this track:\

\

\

\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic\ locations will be omitted from display. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp146*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp146OrthoPt4Pa2Rm3\ codingAnnotations snp146CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp146\ longLabel Simple Nucleotide Polymorphisms (dbSNP 146)\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.5\ shortLabel All SNPs(146)\ track snp146\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp146Common Common SNPs(146) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 146) Found in >= 1% of Samples 0 0.5 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 146, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs that have a minor allele frequency of at least 1% and\ are mapped to a single location in the reference genome assembly are\ included in this subset. Frequency data are not available for all SNPs,\ so this subset is incomplete.\

\

\ The selection of SNPs with a minor allele frequency of 1% or greater\ is an attempt to identify variants that appear to be reasonably common\ in the general population. Taken as a set, common variants should be\ less likely to be associated with severe genetic diseases due to the\ effects of natural selection,\ following the view that deleterious variants are not likely to become\ common in the population.\ However, the significance of any particular variant should be interpreted\ only by a trained medical geneticist using all available information.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp146*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp146OrthoPt4Pa2Rm3\ codingAnnotations snp146CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp146Common\ longLabel Simple Nucleotide Polymorphisms (dbSNP 146) Found in >= 1% of Samples\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.5\ shortLabel Common SNPs(146)\ snpExceptionDesc snp146ExceptionDesc\ snpSeq snp146Seq\ track snp146Common\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp146Flagged Flagged SNPs(146) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 146) Flagged by dbSNP as Clinically Assoc 0 0.5 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 146, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs flagged as clinically associated by dbSNP,\ mapped to a single location in the reference genome assembly, and\ not known to have a minor allele frequency of at\ least 1%, are included in this subset.\ Frequency data are not available for all SNPs, so this subset probably\ includes some SNPs whose true minor allele frequency is 1% or greater.\

\

\ The significance of any particular variant in this track should be\ interpreted only by a trained medical geneticist using all available\ information. For example, some variants are included in this track\ because of their inclusion in a Locus-Specific Database (LSDB) or\ mention in OMIM, but are not thought to be disease-causing, so\ inclusion of a variant in this track is not necessarily an indicator\ of risk. Again, all available information must be carefully considered\ by a qualified professional.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp146*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp146OrthoPt4Pa2Rm3\ codingAnnotations snp146CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp146Flagged\ longLabel Simple Nucleotide Polymorphisms (dbSNP 146) Flagged by dbSNP as Clinically Assoc\ macaqueDb rheMac3\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.5\ shortLabel Flagged SNPs(146)\ snpExceptionDesc snp146ExceptionDesc\ snpSeq snp146Seq\ track snp146Flagged\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp146Mult Mult. SNPs(146) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 146) That Map to Multiple Genomic Loci 0 0.5 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 146, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs that have been mapped to multiple locations in the reference\ genome assembly are included in this subset. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\

\ The default maximum weight for this track is 3,\ unlike the other dbSNP build 146 tracks which have a maximum weight of 1.\ That enables these multiply-mapped SNPs to appear in the display, while\ by default they will not appear in the All SNPs(146) track because of its\ maximum weight filter.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp146*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp146OrthoPt4Pa2Rm3\ codingAnnotations snp146CodingDbSnp,\ defaultGeneTracks knownGene\ defaultMaxWeight 3\ group varRep\ hapmapPhase III\ html ../snp146Mult\ longLabel Simple Nucleotide Polymorphisms (dbSNP 146) That Map to Multiple Genomic Loci\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.5\ shortLabel Mult. SNPs(146)\ snpExceptionDesc snp146ExceptionDesc\ snpSeq snp146Seq\ track snp146Mult\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp144 All SNPs(144) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 144) 0 0.6 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 144, available from\ ftp.ncbi.nih.gov/snp.\

\

\ Three tracks contain subsets of the items in this track:\

\

\

\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic\ locations will be omitted from display. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp144*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp144OrthoPt4Pa2Rm3\ codingAnnotations snp144CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp144\ longLabel Simple Nucleotide Polymorphisms (dbSNP 144)\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.6\ shortLabel All SNPs(144)\ snpSeqFile /gbdb/hg19/snp/snp144.fa\ track snp144\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp144Common Common SNPs(144) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 144) Found in >= 1% of Samples 0 0.6 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 144, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs that have a minor allele frequency of at least 1% and\ are mapped to a single location in the reference genome assembly are\ included in this subset. Frequency data are not available for all SNPs,\ so this subset is incomplete.\

\

\ The selection of SNPs with a minor allele frequency of 1% or greater\ is an attempt to identify variants that appear to be reasonably common\ in the general population. Taken as a set, common variants should be\ less likely to be associated with severe genetic diseases due to the\ effects of natural selection,\ following the view that deleterious variants are not likely to become\ common in the population.\ However, the significance of any particular variant should be interpreted\ only by a trained medical geneticist using all available information.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp144*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp144OrthoPt4Pa2Rm3\ codingAnnotations snp144CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp144Common\ longLabel Simple Nucleotide Polymorphisms (dbSNP 144) Found in >= 1% of Samples\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.6\ shortLabel Common SNPs(144)\ snpExceptionDesc snp144ExceptionDesc\ snpSeq snp144Seq\ snpSeqFile /gbdb/hg19/snp/snp144.fa\ track snp144Common\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp144Flagged Flagged SNPs(144) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 144) Flagged by dbSNP as Clinically Assoc 0 0.6 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 144, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs flagged as clinically associated by dbSNP,\ mapped to a single location in the reference genome assembly, and\ not known to have a minor allele frequency of at\ least 1%, are included in this subset.\ Frequency data are not available for all SNPs, so this subset probably\ includes some SNPs whose true minor allele frequency is 1% or greater.\

\

\ The significance of any particular variant in this track should be\ interpreted only by a trained medical geneticist using all available\ information. For example, some variants are included in this track\ because of their inclusion in a Locus-Specific Database (LSDB) or\ mention in OMIM, but are not thought to be disease-causing, so\ inclusion of a variant in this track is not necessarily an indicator\ of risk. Again, all available information must be carefully considered\ by a qualified professional.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp144*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp144OrthoPt4Pa2Rm3\ codingAnnotations snp144CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp144Flagged\ longLabel Simple Nucleotide Polymorphisms (dbSNP 144) Flagged by dbSNP as Clinically Assoc\ macaqueDb rheMac3\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.6\ shortLabel Flagged SNPs(144)\ snpExceptionDesc snp144ExceptionDesc\ snpSeq snp144Seq\ snpSeqFile /gbdb/hg19/snp/snp144.fa\ track snp144Flagged\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp144Mult Mult. SNPs(144) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 144) That Map to Multiple Genomic Loci 0 0.6 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 144, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs that have been mapped to multiple locations in the reference\ genome assembly are included in this subset. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\

\ The default maximum weight for this track is 3,\ unlike the other dbSNP build 144 tracks which have a maximum weight of 1.\ That enables these multiply-mapped SNPs to appear in the display, while\ by default they will not appear in the All SNPs(144) track because of its\ maximum weight filter.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp144*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp144OrthoPt4Pa2Rm3\ codingAnnotations snp144CodingDbSnp,\ defaultGeneTracks knownGene\ defaultMaxWeight 3\ group varRep\ hapmapPhase III\ html ../snp144Mult\ longLabel Simple Nucleotide Polymorphisms (dbSNP 144) That Map to Multiple Genomic Loci\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.6\ shortLabel Mult. SNPs(144)\ snpExceptionDesc snp144ExceptionDesc\ snpSeq snp144Seq\ snpSeqFile /gbdb/hg19/snp/snp144.fa\ track snp144Mult\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp142 All SNPs(142) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 142) 0 0.7 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 142, available from\ ftp.ncbi.nih.gov/snp.\

\

\ Three tracks contain subsets of the items in this track:\

\

\

\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic \ locations will be omitted from display. When a SNP's flanking sequences \ map to multiple locations in the reference genome, it calls into question \ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh38/database/organism_data/\ for hg38.\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh38/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp142*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19, \ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp142OrthoPt4Pa2Rm3\ codingAnnotations snp142CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp142\ longLabel Simple Nucleotide Polymorphisms (dbSNP 142)\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.7\ shortLabel All SNPs(142)\ snpSeqFile /gbdb/hg19/snp/snp142.fa\ track snp142\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp142Common Common SNPs(142) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 142) Found in >= 1% of Samples 0 0.7 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the \ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 142, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs that have a minor allele frequency of at least 1% and\ are mapped to a single location in the reference genome assembly are\ included in this subset. Frequency data are not available for all SNPs,\ so this subset is incomplete.\

\

\ The selection of SNPs with a minor allele frequency of 1% or greater\ is an attempt to identify variants that appear to be reasonably common\ in the general population. Taken as a set, common variants should be\ less likely to be associated with severe genetic diseases due to the\ effects of natural selection,\ following the view that deleterious variants are not likely to become\ common in the population.\ However, the significance of any particular variant should be interpreted\ only by a trained medical geneticist using all available information.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh38/database/organism_data/\ for hg38.\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh38/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp142*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19, \ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp142OrthoPt4Pa2Rm3\ codingAnnotations snp142CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp142Common\ longLabel Simple Nucleotide Polymorphisms (dbSNP 142) Found in >= 1% of Samples\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.7\ shortLabel Common SNPs(142)\ snpExceptionDesc snp142ExceptionDesc\ snpSeq snp142Seq\ snpSeqFile /gbdb/hg19/snp/snp142.fa\ track snp142Common\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp142Flagged Flagged SNPs(142) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 142) Flagged by dbSNP as Clinically Assoc 0 0.7 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the \ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 142, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs flagged as clinically associated by dbSNP, \ mapped to a single location in the reference genome assembly, and \ not known to have a minor allele frequency of at \ least 1%, are included in this subset.\ Frequency data are not available for all SNPs, so this subset probably\ includes some SNPs whose true minor allele frequency is 1% or greater.\

\

\ The significance of any particular variant in this track should be\ interpreted only by a trained medical geneticist using all available\ information. For example, some variants are included in this track\ because of their inclusion in a Locus-Specific Database (LSDB) or\ mention in OMIM, but are not thought to be disease-causing, so\ inclusion of a variant in this track is not necessarily an indicator\ of risk. Again, all available information must be carefully considered\ by a qualified professional.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh38/database/organism_data/\ for hg38.\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh38/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp142*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19, \ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp142OrthoPt4Pa2Rm3\ codingAnnotations snp142CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp142Flagged\ longLabel Simple Nucleotide Polymorphisms (dbSNP 142) Flagged by dbSNP as Clinically Assoc\ macaqueDb rheMac3\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.7\ shortLabel Flagged SNPs(142)\ snpExceptionDesc snp142ExceptionDesc\ snpSeq snp142Seq\ snpSeqFile /gbdb/hg19/snp/snp142.fa\ track snp142Flagged\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp142Mult Mult. SNPs(142) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 142) That Map to Multiple Genomic Loci 0 0.7 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the \ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 142, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs that have been mapped to multiple locations in the reference\ genome assembly are included in this subset. When a SNP's flanking sequences \ map to multiple locations in the reference genome, it calls into question \ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\

\ The default maximum weight for this track is 3,\ unlike the other dbSNP build 142 tracks which have a maximum weight of 1. \ That enables these multiply-mapped SNPs to appear in the display, while \ by default they will not appear in the All SNPs(142) track because of its \ maximum weight filter.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh38/database/organism_data/\ for hg38.\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh38/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp142*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19, \ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp142OrthoPt4Pa2Rm3\ codingAnnotations snp142CodingDbSnp,\ defaultGeneTracks knownGene\ defaultMaxWeight 3\ group varRep\ hapmapPhase III\ html ../snp142Mult\ longLabel Simple Nucleotide Polymorphisms (dbSNP 142) That Map to Multiple Genomic Loci\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.7\ shortLabel Mult. SNPs(142)\ snpExceptionDesc snp142ExceptionDesc\ snpSeq snp142Seq\ snpSeqFile /gbdb/hg19/snp/snp142.fa\ track snp142Mult\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp141 All SNPs(141) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 141) 0 0.8 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 141, available from\ ftp.ncbi.nih.gov/snp.\

\

\ Three tracks contain subsets of the items in this track:\

\

\

\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic \ locations will be omitted from display. When a SNP's flanking sequences \ map to multiple locations in the reference genome, it calls into question \ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/database/\ (for human, organism_tax_id = human_9606;\ for mouse, organism_tax_id = mouse_10090).\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/rs_fasta/\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp141*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19, \ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp141OrthoPt4Pa2Rm3\ codingAnnotations snp141CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp141\ longLabel Simple Nucleotide Polymorphisms (dbSNP 141)\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.8\ shortLabel All SNPs(141)\ snpSeqFile /gbdb/hg19/snp/snp141.fa\ track snp141\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp141Common Common SNPs(141) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 141) Found in >= 1% of Samples 0 0.8 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the \ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 141, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs that have a minor allele frequency of at least 1% and\ are mapped to a single location in the reference genome assembly are\ included in this subset. Frequency data are not available for all SNPs,\ so this subset is incomplete.\

\

\ The selection of SNPs with a minor allele frequency of 1% or greater\ is an attempt to identify variants that appear to be reasonably common\ in the general population. Taken as a set, common variants should be\ less likely to be associated with severe genetic diseases due to the\ effects of natural selection,\ following the view that deleterious variants are not likely to become\ common in the population.\ However, the significance of any particular variant should be interpreted\ only by a trained medical geneticist using all available information.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/database/\ (for human, organism_tax_id = human_9606;\ for mouse, organism_tax_id = mouse_10090).\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/rs_fasta/\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp141*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19, \ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp141OrthoPt4Pa2Rm3\ codingAnnotations snp141CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp141Common\ longLabel Simple Nucleotide Polymorphisms (dbSNP 141) Found in >= 1% of Samples\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.8\ shortLabel Common SNPs(141)\ snpExceptionDesc snp141ExceptionDesc\ snpSeq snp141Seq\ snpSeqFile /gbdb/hg19/snp/snp141.fa\ track snp141Common\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ dbSnp155Composite dbSNP 155 bed 3 Short Genetic Variants from dbSNP release 155 3 0.8 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$

Description

\

\ This track shows short genetic variants\ (up to approximately 50 base pairs) from\ dbSNP\ build 155:\ single-nucleotide variants (SNVs),\ small insertions, deletions, and complex deletion/insertions (indels),\ relative to the reference genome assembly.\ Most variants in dbSNP are rare, not true polymorphisms,\ and some variants are known to be pathogenic.\

\ For hg38 (GRCh38), approximately 998 million distinct variants\ (RefSNP clusters with rs# ids)\ have been mapped to more than 1.06 billion genomic locations\ including alternate haplotype and fix patch sequences.\ dbSNP remapped variants from hg38 to hg19 (GRCh37);\ approximately 981 million distinct variants were mapped to\ more than 1.02 billion genomic locations\ including alternate haplotype and fix patch sequences (not\ all of which are included in UCSC's hg19).\

\

\ This track includes four subtracks of variants:\

\

\

\ A fifth subtrack highlights coordinate ranges to which dbSNP mapped a variant but with genomic\ coordinates that are not internally consistent, i.e. different coordinate ranges were provided\ when describing different alleles. This can occur due to a bug with mapping variants from one\ assembly sequence to another when there is an indel difference between the assembly sequences:\

\

\ \

Interpreting and Configuring the Graphical Display

\

\ SNVs and pure deletions are displayed as boxes covering the affected base(s).\ Pure insertions are drawn as single-pixel tickmarks between\ the base before and the base after the insertion.\

\ Insertions and/or deletions in repetitive regions may be represented by a half-height box\ showing uncertainty in placement, followed by a full-height box showing the number of deleted\ bases, or a full-height tickmark to indicate an insertion.\ When an insertion or deletion falls in a repetitive region, the placement may be ambiguous.\ For example, if the reference genome contains "TAAAG" but some\ individuals have "TAAG" at the same location, then the variant is a deletion of a single\ A relative to the reference genome.\ However, which A was deleted? There is no way to tell whether the first, second or third A\ was removed.\ Different variant mapping tools may place the deletion at different bases in the reference genome.\ To reduce errors in merging variant calls made with different left vs. right biases,\ dbSNP made a major change in its representation of deletion/insertion variants in build 152.\ Now, instead of assigning a single-base genomic location at one of the A's,\ dbSNP expands the coordinates to encompass the whole repetitive region,\ so the variant is represented as a deletion of 3 A's combined with an insertion of 2 A's.\ In the track display, there will be a half-height box covering the first two A's,\ followed by a full-height box covering the third A, to show a net loss of one base\ but an uncertain placement within the three A's.\

\

\ Variants are colored according to functional effect on genes annotated by dbSNP:\

\ \

Protein-altering variants and splice site variants are\ red.\
Synonymous codon variants are\ green.\
\ Non-coding transcript or Untranslated Region (UTR) variants are\ blue.\

\

\ On the track controls page, several variant properties can be included or excluded from\ the item labels:\ rs# identifier assigned by dbSNP,\ reference/alternate alleles,\ major/minor alleles (when available) and\ minor allele frequency (when available).\ Allele frequencies are reported independently by the project\ (some of which may have overlapping sets of samples):\

\ \ The project from which to take allele frequency data defaults to 1000 Genomes\ but can be set to any of those projects.\

\

\ Using the track controls, variants can be filtered by\ \

\

\ \ \

Interesting and anomalous conditions noted by UCSC

\

\ While processing the information downloaded from dbSNP,\ UCSC annotates some properties of interest.\ These are noted on the item details page,\ and may be useful to include or exclude affected variants.\ \

\ Some are purely informational:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
keyword in data file (dbSnp155.bb)# in hg19# in hg38description
clinvar627817630503Variant is in ClinVar.\
clinvarBenign275541276409Variant is in ClinVar with clinical significance of benign and/or likely benign.\
clinvarConflicting1692516834Variant is in ClinVar with reports of both benign and pathogenic significance.\
clinvarPathogenic5637356475Variant is in ClinVar with clinical significance of pathogenic and/or likely pathogenic.\
commonAll1490450315862783Variant is "common", i.e. has a Minor Allele Frequency of at least 1% in all projects reporting frequencies.\
commonSome5963386462095091Variant is "common", i.e. has a Minor Allele Frequency of at least 1% in some, but not all, projects reporting frequencies.\
diffMajor1274873313073288Different frequency sources have different major alleles.\
overlapDiffClass198945442207101421This variant overlaps another variant with a different type/class.\
overlapSameClass2928195830301090This variant overlaps another with the same type/class but different start/end.\
rareAll906113910938985356Variant is "rare", i.e. has a Minor Allele Frequency of less than 1% in all projects reporting frequencies, or has no frequency data.\
rareSome950843271985217664Variant is "rare", i.e. has a Minor Allele Frequency of less than 1% in some, but not all, projects reporting frequencies, or has no frequency data.\
revStrand55408646770772Alleles are displayed on the + strand at the current position. dbSNP's alleles are displayed on the + strand of a different assembly sequence, so dbSNP's variant page shows alleles that are reverse-complemented with respect to the alleles displayed above.\
\ \

\ while others may indicate that the reference genome contains a rare variant or sequencing issue:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
keyword in data file (dbSnp155.bb)# in hg19# in hg38description
refIsAmbiguous1941The reference genome allele contains an IUPAC ambiguous base (e.g. 'R' for 'A or G', or 'N' for 'any base').\
refIsMinor1495021215386394The reference genome allele is not the major allele in at least one project.\
refIsRare793081822757The reference genome allele is rare (i.e. allele frequency < 1%).\
refIsSingleton694310712794The reference genome allele has never been observed in a population sequencing project reporting frequencies.\
refMismatch118The reference genome allele reported by dbSNP differs from the GenBank assembly sequence. This is very rare and in all cases observed so far, the GenBank assembly has an 'N' while the RefSeq assembly used by dbSNP has a less ambiguous character such as 'R'.\
\ \

\ and others may indicate an anomaly or problem with the variant data:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
keyword in data file (dbSnp155.bb)# in hg19# in hg38description
altIsAmbiguous52945361At least one alternate allele contains an IUPAC ambiguous base (e.g. 'R' for 'A or G'). For alleles containing more than one ambiguous base, this may create a combinatoric explosion of possible alleles.\
classMismatch1328918475Variation class/type is inconsistent with alleles mapped to this genome assembly.\
clusterError373258459130This variant has the same start, end and class as another variant; they probably should have been merged into one variant.\
freqIncomplete00At least one project reported counts for only one allele which implies that at least one allele is missing from the report; that project's frequency data are ignored.\
freqIsAmbiguous43324399At least one allele reported by at least one project that reports frequencies contains an IUPAC ambiguous base.\
freqNotMapped11499721141935At least one project reported allele frequencies relative to a different assembly; However, dbSNP does not include a mapping of this variant to that assembly, which implies a problem with mapping the variant across assemblies. The mapping on this assembly may have an issue; evaluate carefully vs. original submissions, which you can view by clicking through to dbSNP above.\
freqNotRefAlt74139110646At least one allele reported by at least one project that reports frequencies does not match any of the reference or alternate alleles listed by dbSNP.\
multiMap799777286666This variant has been mapped to more than one distinct genomic location.\
otherMapErr91260195051At least one other mapping of this variant has erroneous coordinates. The mapping(s) with erroneous coordinates are excluded from this track and are included in the Map Err subtrack. Sometimes despite this mapping having legal coordinates, there may still be an issue with this mapping's coordinates and alleles; you may want to click through to dbSNP to compare the initial submission's coordinates and alleles. In hg19, 55454 distinct rsIDs are affected; in hg38, 86636. \
\ \

Data Sources and Methods

\

\ dbSNP has collected genetic variant reports from researchers worldwide for \ more than 20 years.\ Since the advent of next-generation sequencing methods and the population sequencing efforts\ that they enable, dbSNP has grown exponentially, requiring a new data schema, computational pipeline,\ web infrastructure, and download files.\ (Holmes et al.)\ The same challenges of exponential growth affected UCSC's presentation of dbSNP variants,\ so we have taken the opportunity to change our internal representation and import pipeline.\ Most notably, flanking sequences are no longer provided by dbSNP,\ because most submissions have been genomic variant calls in VCF format as opposed to\ independent sequences.\

\

\ We downloaded JSON files available from dbSNP at\ http://ftp.ncbi.nlm.nih.gov/snp/archive/b155/JSON/,\ extracted a subset of the information about each variant, and collated\ it into a bigBed file using the\ bigDbSnp.as schema with the information\ necessary for filtering and displaying the variants,\ as well as a separate file containing more detailed information to be\ displayed on each variant's details page\ (dbSnpDetails.as schema).\ \

Data Access

\

\ Note: It is not recommeneded to use LiftOver to convert SNPs between assemblies,\ and more information about how to convert SNPs between assemblies can be found on the following\ FAQ entry.

\

\ Since dbSNP has grown to include over 1 billion variants, the size of the All dbSNP (155)\ subtrack can cause the\ Table Browser and\ Data Integrator\ to time out, leading to a blank page or truncated output,\ unless queries are restricted to a chromosomal region, to particular defined regions, to a specific set \ of rs# IDs (which can be pasted/uploaded into the Table Browser),\ or to one of the subset tracks such as Common (~15 million variants) or ClinVar (~0.8M variants).\

\ For automated analysis, the track data files can be downloaded from the downloads server for\ hg19 and\ hg38.\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
fileformatsubtrack
dbSnp155.bbhg19hg38bigDbSnp (bigBed4+13)All dbSNP (155)
dbSnp155ClinVar.bbhg19hg38bigDbSnp (bigBed4+13)ClinVar dbSNP (155)
dbSnp155Common.bbhg19hg38bigDbSnp (bigBed4+13)Common dbSNP (155)
dbSnp155Mult.bbhg19hg38bigDbSnp (bigBed4+13)Mult. dbSNP (155)
dbSnp155BadCoords.bbhg19hg38bigBed4Map Err (155)
\ dbSnp155Details.tab.gz\ gzip-compressed tab-separated textDetailed variant properties, independent of genome assembly version
\

\

\ Several utilities for working with bigBed-formatted binary files can be downloaded\ here.\ Run a utility with no arguments to see a brief description of the utility and its options.\

\

\ \

Example: retrieve all variants in the region chr1:200001-200400

\ \ 
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/snp/dbSnp155.bb -chrom=chr1 -start=200000 -end=200400 stdout
\ \

Example: retrieve variant rs6657048

\ \ 
bigBedNamedItems dbSnp155.bb rs6657048 stdout
\ \

Example: retrieve all variants with rs# IDs in file myIds.txt

\ \ 
bigBedNamedItems -nameFile dbSnp155.bb myIds.txt dbSnp155.myIds.bed
\ \

\ The columns in the bigDbSnp/bigBed files and dbSnp155Details.tab.gz file are described in\ bigDbSnp.as and\ dbSnpDetails.as respectively.\ \ For columns that contain lists of allele frequency data, the order of projects\ providing the data listed is as follows:\

    \
  1. \ 1000Genomes\
    2. \
  2. \ dbGaP_PopFreq\
    3. \
  3. \ TOPMED\
    4. \
  4. \ KOREAN\
    5. \
  5. \ SGDP_PRJ\
    6. \
  6. \ Qatari\
    7. \
  7. \ NorthernSweden\
    8. \
  8. \ Siberian\
    9. \
  9. \ TWINSUK\
    10. \
  10. \ TOMMO\
    11. \
  11. \ ALSPAC\
    12. \
  12. \ GENOME_DK\
    13. \
  13. \ GnomAD\
    14. \
  14. \ GoNL\
    15. \
  15. \ Estonian\
    16. \
  16. \ Vietnamese\
    17. \
  17. \ Korea1K\
    18. \
  18. \ HapMap\
    19. \
  19. \ PRJEB36033\
    20. \
  20. \ HGDP_Stanford\
    21. \
  21. \ Daghestan\
    22. \
  22. \ PAGE_STUDY\
    23. \
  23. \ Chileans\
    24. \
  24. \ MGP\
    25. \
  25. \ PRJEB37584\
    26. \
  26. \ GoESP\
    27. \
  27. \ ExAC\
    28. \
  28. \ GnomAD_exomes\
    29. \
  29. \ FINRISK\
    30. \
  30. \ PharmGKB\
    31. \
  31. \ PRJEB37766\
    32. \
\ The functional effect (maxFuncImpact) for each variant contains the\ Sequence\ Ontology (SO) ID for the greatest functional impact on the gene. This field\ contains a 0 when no SO terms are annotated on the variant.\

\ UCSC also has an\ API\ that can be used to retrieve values from a particular chromosome range.\

\ A list of rs# IDs can be pasted/uploaded in the\ Variant Annotation Integrator\ tool to find out which genes (if any) the variants are located in,\ as well as functional effect such as intron, coding-synonymous, missense, frameshift, etc.\

\ Please refer to our searchable\ mailing list archives\ for more questions and example queries, or our\ Data Access FAQ\ for more information.\

\ \

References

\ \

\ Holmes JB, Moyer E, Phan L, Maglott D, Kattman B.\ \ SPDI: Data Model for Variants and Applications at NCBI.\ Bioinformatics. 2019 Nov 18;.\ PMID: 31738401\

\

\ Sayers EW, Agarwala R, Bolton EE, Brister JR, Canese K, Clark K, Connor R, Fiorini N, Funk K,\ Hefferon T et al.\ \ Database resources of the National Center for Biotechnology Information.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D23-D28.\ PMID: 30395293; PMC: PMC6323993\

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122;\ PMC: PMC29783\

\ \ varRep 1 compositeTrack on\ group varRep\ longLabel Short Genetic Variants from dbSNP release 155\ maxWindowCoverage 4000000\ priority 0.8\ shortLabel dbSNP 155\ subGroup1 view Views variants=Variants errs=Mapping_Errors\ track dbSnp155Composite\ type bed 3\ url https://www.ncbi.nlm.nih.gov/snp/$$\ urlLabel dbSNP:\ visibility pack\ snp141Flagged Flagged SNPs(141) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 141) Flagged by dbSNP as Clinically Assoc 0 0.8 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the \ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 141, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs flagged as clinically associated by dbSNP, \ mapped to a single location in the reference genome assembly, and \ not known to have a minor allele frequency of at \ least 1%, are included in this subset.\ Frequency data are not available for all SNPs, so this subset probably\ includes some SNPs whose true minor allele frequency is 1% or greater.\

\

\ The significance of any particular variant in this track should be\ interpreted only by a trained medical geneticist using all available\ information. For example, some variants are included in this track\ because of their inclusion in a Locus-Specific Database (LSDB) or\ mention in OMIM, but are not thought to be disease-causing, so\ inclusion of a variant in this track is not necessarily an indicator\ of risk. Again, all available information must be carefully considered\ by a qualified professional.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/database/\ (for human, organism_tax_id = human_9606;\ for mouse, organism_tax_id = mouse_10090).\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/rs_fasta/\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp141*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19, \ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp141OrthoPt4Pa2Rm3\ codingAnnotations snp141CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp141Flagged\ longLabel Simple Nucleotide Polymorphisms (dbSNP 141) Flagged by dbSNP as Clinically Assoc\ macaqueDb rheMac3\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.8\ shortLabel Flagged SNPs(141)\ snpExceptionDesc snp141ExceptionDesc\ snpSeq snp141Seq\ snpSeqFile /gbdb/hg19/snp/snp141.fa\ track snp141Flagged\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ dbSnp155ViewErrs Mapping Errors bed 3 Short Genetic Variants from dbSNP release 155 1 0.8 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 longLabel Short Genetic Variants from dbSNP release 155\ parent dbSnp155Composite\ shortLabel Mapping Errors\ track dbSnp155ViewErrs\ view errs\ visibility dense\ dbSnp155ViewVariants Variants bigDbSnp Short Genetic Variants from dbSNP release 155 1 0.8 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 classFilterType multipleListOr\ classFilterValues snv,mnv,ins,del,delins,identity\ detailsTabUrls _dataOffset=/gbdb/hgFixed/dbSnp/dbSnp155Details.tab.gz\ freqSourceOrder 1000Genomes,dbGaP_PopFreq,TOPMED,KOREAN,SGDP_PRJ,Qatari,NorthernSweden,Siberian,TWINSUK,TOMMO,ALSPAC,GENOME_DK,GnomAD,GoNL,Estonian,Vietnamese,Korea1K,HapMap,PRJEB36033,HGDP_Stanford,Daghestan,PAGE_STUDY,Chileans,MGP,PRJEB37584,GoESP,ExAC,GnomAD_exomes,FINRISK,PharmGKB,PRJEB37766\ longLabel Short Genetic Variants from dbSNP release 155\ maxFuncImpactFilterLabel Greatest functional impact on gene\ maxFuncImpactFilterType multipleListOr\ maxFuncImpactFilterValues 0|(not annotated),0865|frameshift,1587|stop_gained,1574|splice_acceptor_variant,1575|splice_donor_variant,1821|inframe_insertion,1583|missense_variant,1590|terminator_codon_variant,1819|synonymous_variant,1580|coding_sequence_variant,1623|5_prime_UTR_variant,1624|3_prime_UTR_variant,1619|nc_transcript_variant,2|genic_upstream_transcript_variant,1986|upstream_transcript_variant,2152|genic_downstream_transcript_variant,1987|downstream_transcript_variant,1627|intron_variant\ parent dbSnp155Composite\ shortLabel Variants\ track dbSnp155ViewVariants\ type bigDbSnp\ ucscNotesFilterType multipleListOr\ ucscNotesFilterValues altIsAmbiguous|Alternate allele contains IUPAC ambiguous base(s),classMismatch|Variant class/type is inconsistent with allele sizes,clinvar|Present in ClinVar,clinvarBenign|ClinVar significance of benign and/or likely benign,clinvarConflicting|ClinVar includes both benign and pathogenic reports,clinvarPathogenic|ClinVar significance of pathogenic and/or likely pathogenic,clusterError|Overlaps a variant with the same type/class and position,commonAll|MAF >= 1% in all projects that report frequencies,commonSome|MAF >= 1% in at least one project that reports frequencies,diffMajor|Different projects report different major alleles,freqIncomplete|Frequency reported with incomplete allele data,freqIsAmbiguous|Frequency reported for allele with IUPAC ambiguous base(s),freqNotMapped|Frequency reported on different assembly but not mapped by dbSNP,freqNotRefAlt|Reference genome allele is not major allele in at least one project,multiMap|Variant is placed in more than one genomic position,otherMapErr|Another mapping of this variant has illegal coords (indel mapping error?),overlapDiffClass|Variant overlaps other variant(s) of different type/class,overlapSameClass|Variant overlaps other variant(s) of same type/class but different position,rareAll|MAF < 1% in all projects that report frequencies (or no frequency data),rareSome|MAF < 1% in at least one project that reports frequencies,refIsAmbiguous|Reference genome allele contains IUPAC ambiguous base(s),refIsMinor|Reference genome allele is minor allele in at least one project that reports frequencies,refIsRare|Reference genome allele frequency is <1% in at least one project,refIsSingleton|Reference genome frequency is 0 in all projects that report frequencies,refMismatch|Reference allele mismatches reference genome sequence,revStrand|Variant maps to opposite strand relative to dbSNP's preferred top-level placement\ view variants\ visibility dense\ snp138 All SNPs(138) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 138) 0 0.9 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 138, available from\ ftp.ncbi.nih.gov/snp.\

\

\ Three tracks contain subsets of the items in this track:\

\

\

\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic \ locations will be omitted from display. When a SNP's flanking sequences \ map to multiple locations in the reference genome, it calls into question \ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\ \ The remainder of this page is identical on the following tracks for all assemblies and versions:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/database/\ (for human, organism_tax_id = human_9606;\ for mouse, organism_tax_id = mouse_10090).\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/rs_fasta/\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38, \ hg19, mm10,\ susScr3, \ bosTau7, and galGal4 \ (snp138*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\ \ \

\ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for\ download.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exlcude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp138OrthoPt4Pa2Rm3\ codingAnnotations snp138CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html snp138\ longLabel Simple Nucleotide Polymorphisms (dbSNP 138)\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.9\ shortLabel All SNPs(138)\ snpSeqFile /gbdb/hg19/snp/snp138.fa\ track snp138\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp138Common Common SNPs(138) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 138) Found in >= 1% of Samples 0 0.9 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the \ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 138, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs that have a minor allele frequency of at least 1% and\ are mapped to a single location in the reference genome assembly are\ included in this subset. Frequency data are not available for all SNPs,\ so this subset is incomplete.\

\

\ The selection of SNPs with a minor allele frequency of 1% or greater\ is an attempt to identify variants that appear to be reasonably common\ in the general population. Taken as a set, common variants should be\ less likely to be associated with severe genetic diseases due to the\ effects of natural selection,\ following the view that deleterious variants are not likely to become\ common in the population.\ However, the significance of any particular variant should be interpreted\ only by a trained medical geneticist using all available information.\

\ \ The remainder of this page is identical on the following tracks for all assemblies and versions:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/database/\ (for human, organism_tax_id = human_9606;\ for mouse, organism_tax_id = mouse_10090).\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/rs_fasta/\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38, \ hg19, mm10,\ susScr3, \ bosTau7, and galGal4 \ (snp138*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\ \ \

\ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for\ download.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exlcude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp138OrthoPt4Pa2Rm3\ codingAnnotations snp138CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../../snp138Common\ longLabel Simple Nucleotide Polymorphisms (dbSNP 138) Found in >= 1% of Samples\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.9\ shortLabel Common SNPs(138)\ snpExceptionDesc snp138ExceptionDesc\ snpSeq snp138Seq\ snpSeqFile /gbdb/hg19/snp/snp138.fa\ track snp138Common\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp138Flagged Flagged SNPs(138) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 138) Flagged as Clinically Assoc 0 0.9 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the \ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 138, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs flagged as clinically associated by dbSNP, \ mapped to a single location in the reference genome assembly, and \ not known to have a minor allele frequency of at \ least 1%, are included in this subset.\ Frequency data are not available for all SNPs, so this subset probably\ includes some SNPs whose true minor allele frequency is 1% or greater.\

\

\ The significance of any particular variant in this track should be\ interpreted only by a trained medical geneticist using all available\ information. For example, some variants are included in this track\ because of their inclusion in a Locus-Specific Database (LSDB) or\ mention in OMIM, but are not thought to be disease-causing, so\ inclusion of a variant in this track is not necessarily an indicator\ of risk. Again, all available information must be carefully considered\ by a qualified professional.\

\ \ The remainder of this page is identical on the following tracks for all assemblies and versions:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/database/\ (for human, organism_tax_id = human_9606;\ for mouse, organism_tax_id = mouse_10090).\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/rs_fasta/\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38, \ hg19, mm10,\ susScr3, \ bosTau7, and galGal4 \ (snp138*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\ \ \

\ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for\ download.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exlcude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp138OrthoPt4Pa2Rm3\ codingAnnotations snp138CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html snp138Flagged\ longLabel Simple Nucleotide Polymorphisms (dbSNP 138) Flagged as Clinically Assoc\ macaqueDb rheMac3\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.9\ shortLabel Flagged SNPs(138)\ snpExceptionDesc snp138ExceptionDesc\ snpSeq snp138Seq\ snpSeqFile /gbdb/hg19/snp/snp138.fa\ track snp138Flagged\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp138Mult Mult. SNPs(138) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 138) That Map to Multiple Genomic Loci 0 0.9 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the \ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 138, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs that have been mapped to multiple locations in the reference\ genome assembly are included in this subset. When a SNP's flanking sequences \ map to multiple locations in the reference genome, it calls into question \ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\

\ The default maximum weight for this track is 3,\ unlike the other dbSNP build 138 tracks which have a maximum weight of 1. \ That enables these multiply-mapped SNPs to appear in the display, while \ by default they will not appear in the All SNPs(138) track because of its \ maximum weight filter.\

\ \ The remainder of this page is identical on the following tracks for all assemblies and versions:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/database/\ (for human, organism_tax_id = human_9606;\ for mouse, organism_tax_id = mouse_10090).\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/rs_fasta/\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38, \ hg19, mm10,\ susScr3, \ bosTau7, and galGal4 \ (snp138*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\ \ \

\ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for\ download.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exlcude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp138OrthoPt4Pa2Rm3\ codingAnnotations snp138CodingDbSnp,\ defaultGeneTracks knownGene\ defaultMaxWeight 3\ group varRep\ hapmapPhase III\ html ../../snp138Mult\ longLabel Simple Nucleotide Polymorphisms (dbSNP 138) That Map to Multiple Genomic Loci\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.9\ shortLabel Mult. SNPs(138)\ snpExceptionDesc snp138ExceptionDesc\ snpSeq snp138Seq\ snpSeqFile /gbdb/hg19/snp/snp138.fa\ track snp138Mult\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ chainSarHar1 Tasmanian devil Chain chain sarHar1 Tasmanian devil (Feb. 2011 (WTSI Devil_ref v7.0/sarHar1)) Chained Alignments 3 1 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Tasmanian devil (Feb. 2011 (WTSI Devil_ref v7.0/sarHar1)) Chained Alignments\ otherDb sarHar1\ parent vertebrateChainNetViewchain off\ shortLabel Tasmanian devil Chain\ subGroups view=chain species=s002 clade=c00\ track chainSarHar1\ type chain sarHar1\ chainPanTro4 Chimp Chain chain panTro4 Chimp (Feb. 2011 (CSAC 2.1.4/panTro4)) Chained Alignments 3 1 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Chimp (Feb. 2011 (CSAC 2.1.4/panTro4)) Chained Alignments\ otherDb panTro4\ parent primateChainNetViewchain off\ shortLabel Chimp Chain\ subGroups view=chain species=s004 clade=c00\ track chainPanTro4\ type chain panTro4\ chainCavPor3 Guinea pig Chain chain cavPor3 Guinea pig (Feb. 2008 (Broad/cavPor3)) Chained Alignments 3 1 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Guinea pig (Feb. 2008 (Broad/cavPor3)) Chained Alignments\ otherDb cavPor3\ parent placentalChainNetViewchain off\ shortLabel Guinea pig Chain\ subGroups view=chain species=s000 clade=c00\ track chainCavPor3\ type chain cavPor3\ tgpPhase3AccessibilityPilotCriteria 1000G Accs Pilot bigBed 3 1000 Genomes Project Phase 3 Paired-end Accessible Regions - Pilot Criteria 3 1 100 100 100 177 177 177 0 0 22 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9, varRep 1 bigDataUrl /gbdb/hg19/1000Genomes/phase3/20141020.pilot_mask.whole_genome.bb\ color 100,100,100\ longLabel 1000 Genomes Project Phase 3 Paired-end Accessible Regions - Pilot Criteria\ parent tgpPhase3Accessibility\ shortLabel 1000G Accs Pilot\ track tgpPhase3AccessibilityPilotCriteria\ tgpPhase1AccessibilityPilotCriteria 1000G Accs Pilot bigBed 3 1000 Genomes Project Phase 1 Paired-end Accessible Regions - Pilot Criteria 0 1 100 100 100 177 177 177 0 0 15 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22, varRep 1 color 100,100,100\ longLabel 1000 Genomes Project Phase 1 Paired-end Accessible Regions - Pilot Criteria\ parent tgpPhase1Accessibility\ shortLabel 1000G Accs Pilot\ track tgpPhase1AccessibilityPilotCriteria\ encTfChipPkENCFF913MUA A549 ATF3 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in A549 from ENCODE 3 (ENCFF913MUA) 1 1 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ATF3 in A549 from ENCODE 3 (ENCFF913MUA)\ parent encTfChipPk off\ shortLabel A549 ATF3\ subGroups cellType=A549 factor=ATF3\ track encTfChipPkENCFF913MUA\ wgEncodeHaibRnaSeqA549Dex100nmRawRep1 A549 DEX100nM 1 bigWig 0.217478 1051.670044 A549 DEX 1 hr 100 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 DEX 1 hr 100 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal on\ shortLabel A549 DEX100nM 1\ subGroups view=RawSignal cellType=t2A549 treatment=DEX100NM rep=rep1\ track wgEncodeHaibRnaSeqA549Dex100nmRawRep1\ type bigWig 0.217478 1051.670044\ lincRNAsCTAdipose Adipose bed 5 + lincRNAs from adipose 1 1 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from adipose\ parent lincRNAsAllCellType on\ shortLabel Adipose\ subGroups view=lincRNAsRefseqExp tissueType=adipose\ track lincRNAsCTAdipose\ gtexEqtlTissueAdiposeSubcut adiposeSubcut bed 9 + Expression QTL in Adipose_Subcutaneous from GTEx V6 0 1 255 165 79 255 210 167 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 255,165,79\ idInUrlSql select gene from gtexEqtlTissueAdiposeSubcut where name='%s'\ longLabel Expression QTL in Adipose_Subcutaneous from GTEx V6\ parent gtexEqtlTissue on\ shortLabel adiposeSubcut\ track gtexEqtlTissueAdiposeSubcut\ snpArrayAffy6 Affy SNP 6.0 bed 6 + Affymetrix SNP 6.0 0 1 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Affymetrix SNP 6.0\ parent genotypeArrays\ priority 1\ shortLabel Affy SNP 6.0\ track snpArrayAffy6\ type bed 6 +\ AmpliSeq-Target AmpliSeq Target bigBed 4 Illumina - AmpliSeq Exome Panel Target Regions 0 1 22 62 164 138 158 209 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/Exome.dna_manifest.20180509.bb\ color 22,62,164\ longLabel Illumina - AmpliSeq Exome Panel Target Regions\ parent exomeProbesets on\ shortLabel AmpliSeq Target\ track AmpliSeq-Target\ type bigBed 4\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep1LK1_CNhs13339_ctss_fwd AorticSmsToFgf2_00hr00minBr1+ bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)_CNhs13339_12642-134G5_forward 0 1 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12642-134G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep1%20%28LK1%29.CNhs13339.12642-134G5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)_CNhs13339_12642-134G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12642-134G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep1LK1_CNhs13339_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12642-134G5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep1LK1_CNhs13339_tpm_fwd AorticSmsToFgf2_00hr00minBr1+ bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)_CNhs13339_12642-134G5_forward 1 1 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12642-134G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep1%20%28LK1%29.CNhs13339.12642-134G5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)_CNhs13339_12642-134G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12642-134G5 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToFgf2_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep1LK1_CNhs13339_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12642-134G5\ urlLabel FANTOM5 Details:\ ashkenazimTrio Ashkenazim Trio vcfPhasedTrio Genome In a Bottle Ashkenazim Trio 0 1 0 0 0 127 127 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/giab/AshkenazimTrio/merged.vcf.gz\ longLabel Genome In a Bottle Ashkenazim Trio\ maxWindowToDraw 5000000\ parent triosView\ shortLabel Ashkenazim Trio\ subGroups view=trios\ track ashkenazimTrio\ type vcfPhasedTrio\ vcfChildSample HG002|son\ vcfDoFilter off\ vcfDoMaf off\ vcfDoQual off\ vcfParentSamples HG003|father,HG004|mother\ vcfUseAltSampleNames on\ cons100wayViewphyloP Basewise Conservation (phyloP) bed 4 Vertebrate Multiz Alignment & Conservation (100 Species) 2 1 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Vertebrate Multiz Alignment & Conservation (100 Species)\ parent cons100way\ shortLabel Basewise Conservation (phyloP)\ track cons100wayViewphyloP\ view phyloP\ viewLimits -20.0:9.869\ viewLimitsMax -20:0.869\ visibility full\ wgEncodeGencodeBasicV7 Basic genePred Basic Gene Annotation Set from ENCODE/GENCODE Version 7 2 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from ENCODE/GENCODE Version 7\ parent wgEncodeGencodeV7ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV7\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV37lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 37lift37 (Ensembl 103) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 37lift37 (Ensembl 103)\ parent wgEncodeGencodeV37lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV37lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV27lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)\ parent wgEncodeGencodeV27lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV27lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV43lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 43lift37 (Ensembl 109) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 43lift37 (Ensembl 109)\ parent wgEncodeGencodeV43lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV43lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV14 Basic genePred Basic Gene Annotation Set from ENCODE/GENCODE Version 14 2 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from ENCODE/GENCODE Version 14\ parent wgEncodeGencodeV14ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV14\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV17 Basic genePred Basic Gene Annotation Set from ENCODE/GENCODE Version 17 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from ENCODE/GENCODE Version 17\ parent wgEncodeGencodeV17ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV17\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV19 Basic genePred Basic Gene Annotation Set from GENCODE Version 19 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 19\ parent wgEncodeGencodeV19ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV19\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV33lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)\ parent wgEncodeGencodeV33lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV33lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV38lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 38lift37 (Ensembl 104) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 38lift37 (Ensembl 104)\ parent wgEncodeGencodeV38lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV38lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV28lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)\ parent wgEncodeGencodeV28lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV28lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV44lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 44lift37 (Ensembl 110) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 44lift37 (Ensembl 110)\ parent wgEncodeGencodeV44lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV44lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV34lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 34lift37 (Ensembl 100) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 34lift37 (Ensembl 100)\ parent wgEncodeGencodeV34lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV34lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV24lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)\ parent wgEncodeGencodeV24lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV24lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV40lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 40lift37 (Ensembl 106) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 40lift37 (Ensembl 106)\ parent wgEncodeGencodeV40lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV40lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV39lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 39lift37 (Ensembl 105) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 39lift37 (Ensembl 105)\ parent wgEncodeGencodeV39lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV39lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV45lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 45lift37 (Ensembl 111) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 45lift37 (Ensembl 111)\ parent wgEncodeGencodeV45lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV45lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV35lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 35lift37 (Ensembl 101) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 35lift37 (Ensembl 101)\ parent wgEncodeGencodeV35lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV35lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV41lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 41lift37 (Ensembl 107) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 41lift37 (Ensembl 107)\ parent wgEncodeGencodeV41lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV41lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV31lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)\ parent wgEncodeGencodeV31lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV31lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV46lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 46lift37 (Ensembl 112) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 46lift37 (Ensembl 112)\ parent wgEncodeGencodeV46lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV46lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV36lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 36lift37 (Ensembl 102) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 36lift37 (Ensembl 102)\ parent wgEncodeGencodeV36lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV36lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV42lift37 Basic genePred Basic Gene Annotation Set from GENCODE Version 42lift37 (Ensembl 108) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 42lift37 (Ensembl 108)\ parent wgEncodeGencodeV42lift37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV42lift37\ trackHandler wgEncodeGencode\ type genePred\ cnvDevDelayCase Case gvf Copy Number Variation Morbidity Map of Developmental Delay - Case 3 1 0 0 0 127 127 127 0 0 0 phenDis 1 longLabel Copy Number Variation Morbidity Map of Developmental Delay - Case\ parent cnvDevDelay on\ priority 1\ shortLabel Case\ track cnvDevDelayCase\ type gvf\ visibility pack\ clinGenHaplo ClinGen Haploinsufficiency bigBed 9 + ClinGen Dosage Sensitivity Map - Haploinsufficiency 3 1 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg19/bbi/clinGen/clinGenHaplo.bb\ filterLabel.haploScore Dosage Sensitivity Score\ filterValues.haploScore 0|No evidence available,1|Little evidence for dosage pathogenicity,2|Some evidence for dosage pathogenicity,3|Sufficient evidence for dosage pathogenicity,30|Gene associated with autosomal recessive phenotype,40|Dosage sensitivity unlikely\ longLabel ClinGen Dosage Sensitivity Map - Haploinsufficiency\ mouseOverField _mouseOver\ parent clinGenComp on\ priority 1\ shortLabel ClinGen Haploinsufficiency\ showCfg on\ track clinGenHaplo\ type bigBed 9 +\ urls url="$$" PMID1="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID2="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID3="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID4="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID5="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID6="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" mondoID="https://monarchinitiative.org/disease/$$"\ visibility pack\ clinvarMain ClinVar SNVs bigBed 12 + ClinVar Short Variants < 50bp 0 1 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg19/bbi/clinvar/clinvarMain.bb\ filter._varLen 0\ filterByRange._varLen on\ filterLabel._originCode Alelle Origin\ filterLimits._varLen 0:49\ filterType._allTypeCode multiple\ filterType._clinSignCode multiple\ filterType._originCode multiple\ filterValues._allTypeCode SUBST|single nucleotide variant - SUBST,STRUCT|translocation and fusion - STRUCT,LOSS|deletion and copy loss - LOSS,GAIN|duplication and copy gain - GAIN,INS|indel and insertion - INS,INV|inversion - INV,SEQALT|undetermined - SEQALT,SEQLEN|repeat change - SEQLEN\ filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,RF|risk factor,OT|other,VUS|vus\ filterValues._originCode GERM|germline,SOM|somatic,GERMSOM|germline/somatic,UNK|unknown\ filterValues.molConseq genic downstream transcript variant|genic downstream transcript variant,no sequence alteration|no sequence alteration,inframe indel|inframe indel,stop lost|stop lost,genic upstream transcript variant|genic upstream transcript variant,initiatior codon variant|initiatior codon variant,inframe insertion|inframe insertion,inframe deletion|inframe deletion,splice acceptor variant|splice acceptor variant,splice donor variant|splice donor variant,5 prime UTR variant|5 prime UTR variant,nonsense|nonsense,non-coding transcript variant|non-coding transcript variant,3 prime UTR variant|3 prime UTR variant,frameshift variant|frameshift variant,intron variant|intron variant,synonymous variant|synonymous variant,missense variant|missense variant,|unknown,initiator codon variant|initiator codon variant\ group phenDis\ itemRgb on\ longLabel ClinVar Short Variants < 50bp\ maxWindowCoverage 10000000\ mouseOverField _mouseOver\ noScoreFilter on\ parent clinvar\ priority 1\ searchIndex _dbVarSsvId\ shortLabel ClinVar SNVs\ showCfg on\ skipFields rcvAcc\ track clinvarMain\ type bigBed 12 +\ urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/snp/$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"\ visibility hide\ dbSnp153Common Common dbSNP(153) bigDbSnp Common (1000 Genomes Phase 3 MAF >= 1%) Short Genetic Variants from dbSNP Release 153 1 1 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg19/snp/dbSnp153Common.bb\ defaultGeneTracks knownGene\ longLabel Common (1000 Genomes Phase 3 MAF >= 1%) Short Genetic Variants from dbSNP Release 153\ parent dbSnp153ViewVariants on\ priority 1\ shortLabel Common dbSNP(153)\ subGroups view=variants\ track dbSnp153Common\ dbSnp155Common Common dbSNP(155) bigDbSnp Common (1000 Genomes Phase 3 MAF >= 1%) Short Genetic Variants from dbSNP Release 155 1 1 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg19/snp/dbSnp155Common.bb\ defaultGeneTracks knownGene\ longLabel Common (1000 Genomes Phase 3 MAF >= 1%) Short Genetic Variants from dbSNP Release 155\ parent dbSnp155ViewVariants on\ priority 1\ shortLabel Common dbSNP(155)\ showCfg on\ subGroups view=variants\ track dbSnp155Common\ cons100way Conservation bed 4 Vertebrate Multiz Alignment & Conservation (100 Species) 2 1 0 0 0 127 127 127 0 0 0

\ Downloads for data in this track are available:\

\ \

Description

\

\ This track shows multiple alignments of 100 vertebrate\ species and measurements of evolutionary conservation using\ two methods (phastCons and phyloP) from the\ \ PHAST package, for all species.\ The multiple alignments were generated using multiz and\ other tools in the UCSC/Penn State Bioinformatics\ comparative genomics alignment pipeline.\ Conserved elements identified by phastCons are also displayed in\ this track.\ PHAST/Multiz are built from chains ("alignable") and nets ("syntenic"),\ see the documentation of the Chain/Net tracks for a description of the complete\ alignment process.\

\

\ PhastCons is a hidden Markov model-based method that estimates the probability that each\ nucleotide belongs to a conserved element, based on the multiple alignment.\ It considers not just each individual alignment column, but also its\ flanking columns. By contrast, phyloP separately measures conservation at\ individual columns, ignoring the effects of their neighbors. As a\ consequence, the phyloP plots have a less smooth appearance than the\ phastCons plots, with more "texture" at individual sites. The two methods\ have different strengths and weaknesses. PhastCons is sensitive to "runs"\ of conserved sites, and is therefore effective for picking out conserved\ elements. PhyloP, on the other hand, is more appropriate for evaluating\ signatures of selection at particular nucleotides or classes of nucleotides\ (e.g., third codon positions, or first positions of miRNA target sites).\

\

\ Another important difference is that phyloP can measure acceleration\ (faster evolution than expected under neutral drift) as well as\ conservation (slower than expected evolution). In the phyloP plots, sites\ predicted to be conserved are assigned positive scores (and shown in blue),\ while sites predicted to be fast-evolving are assigned negative scores (and\ shown in red). The absolute values of the scores represent -log p-values\ under a null hypothesis of neutral evolution. The phastCons scores, by\ contrast, represent probabilities of negative selection and range between 0\ and 1.\

\

\ Both phastCons and phyloP treat alignment gaps and unaligned nucleotides as\ missing data, and both were run with the same parameters.\

\ \

\ UCSC has repeatmasked and aligned all genome assemblies, and\ provides all the sequences for download. For genome assemblies\ not available in the genome browser, there are alternative assembly hub\ genome browsers. Missing sequence in any assembly\ is highlighted in the track display by regions of yellow when\ zoomed out and by Ns when displayed at base level (see Gap Annotation, below).

\

\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Primate subset
OrganismSpeciesRelease dateUCSC versionAlignment type
BaboonPapio hamadryasNov 2008Baylor Pham_1.0/papHam1Reciprocal best net
BushbabyOtolemur garnettiiMar 2011Broad/otoGar3Syntenic net
ChimpPan troglodytesFeb 2011CSAC 2.1.4/panTro4Syntenic net
Crab-eating macaqueMacaca fascicularisJun 2013Macaca_fascicularis_5.0/macFas5Syntenic net
GibbonNomascus leucogenysOct 2012GGSC Nleu3.0/nomLeu3Syntenic net
GorillaGorilla gorilla gorillaMay 2011gorGor3.1/gorGor3Reciprocal best net
Green monkeyChlorocebus sabaeusJun 2013Chlorocebus_sabeus 1.0/chlSab1Syntenic net
HumanHomo sapiensFeb 2009GRCh37/hg19reference species
MarmosetCallithrix jacchusMar 2009WUGSC 3.2/calJac3Syntenic net
OrangutanPongo pygmaeus abeliiJuly 2007WUGSC 2.0.2/ponAbe2Reciprocal best net
RhesusMacaca mulattaOct 2010BGI CR_1.0/rheMac3Syntenic net
Squirrel monkeySaimiri boliviensisOct 2011Broad/saiBol1Syntenic net
Euarchontoglires subset
Brush-tailed ratOctodon degusApr 2012OctDeg1.0/octDeg1Syntenic net
ChinchillaChinchilla lanigeraMay 2012 ChiLan1.0/chiLan1Syntenic net
Chinese hamsterCricetulus griseusJul 2013C_griseus_v1.0/criGri1Syntenic net
Chinese tree shrewTupaia chinensisJan 2013TupChi_1.0/tupChi1Syntenic net
Golden hamsterMesocricetus auratusMar 2013MesAur1.0/mesAur1Syntenic net
Guinea pigCavia porcellusFeb 2008Broad/cavPor3Syntenic net
Lesser Egyptian jerboaJaculus jaculusMay 2012JacJac1.0/jacJac1Syntenic net
MouseMus musculusDec 2011GRCm38/mm10Syntenic net
Naked mole-ratHeterocephalus glaberJan 2012Broad HetGla_female_1.0/hetGla2Syntenic net
PikaOchotona princepsMay 2012OchPri3.0/ochPri3Syntenic net
Prairie voleMicrotus ochrogasterOct 2012MicOch1.0/micOch1Syntenic net
RabbitOryctolagus cuniculusApr 2009Broad/oryCun2Syntenic net
RatRattus norvegicusMar 2012RGSC 5.0/rn5Syntenic net
SquirrelSpermophilus tridecemlineatusNov 2011Broad/speTri2Syntenic net
Laurasiatheria subset
AlpacaVicugna pacosMar 2013Vicugna_pacos-2.0.1/vicPac2Syntenic net
Bactrian camelCamelus ferusDec 2011CB1/camFer1Syntenic net
Big brown batEptesicus fuscusJul 2012EptFus1.0/eptFus1Syntenic net
Black flying-foxPteropus alectoAug 2012ASM32557v1/pteAle1Syntenic net
CatFelis catusSep 2011ICGSC Felis_catus 6.2/felCat5Syntenic net
CowBos taurusOct 2011Baylor Btau_4.6.1/bosTau7Syntenic net
David's myotis batMyotis davidiiAug 2012ASM32734v1/myoDav1Syntenic net
DogCanis lupus familiarisSep 2011Broad CanFam3.1/canFam3Syntenic net
DolphinTursiops truncatusOct 2011Baylor Ttru_1.4/turTru2Reciprocal best net
Domestic goatCapra hircusMay 2012CHIR_1.0/capHir1Syntenic net
Ferret Mustela putorius furoApr 2011MusPutFur1.0/musFur1Syntenic net
HedgehogErinaceus europaeusMay 2012EriEur2.0/eriEur2Syntenic net
HorseEquus caballusSep 2007Broad/equCab2Syntenic net
Killer whaleOrcinus orcaJan 2013Oorc_1.1/orcOrc1Syntenic net
Little brown batMyotis lucifugusJul 2010Broad Institute Myoluc2.0/myoLuc2Syntenic net
MegabatPteropus vampyrusJul 2008Broad/pteVam1Reciprocal best net
Pacific walrusOdobenus rosmarus divergensJan 2013Oros_1.0/odoRosDiv1Syntenic net
PandaAiluropoda melanoleucaDec 2009BGI-Shenzhen 1.0/ailMel1Syntenic net
PigSus scrofaAug 2011SGSC Sscrofa10.2/susScr3Syntenic net
SheepOvis ariesAug 2012ISGC Oar_v3.1/oviAri3Syntenic net
ShrewSorex araneusAug 2008Broad/sorAra2Syntenic net
Star-nosed moleCondylura cristataMar 2012ConCri1.0/conCri1Syntenic net
Tibetan antelopePantholops hodgsoniiMay 2013PHO1.0/panHod1Syntenic net
Weddell sealLeptonychotes weddelliiMar 2013LepWed1.0/lepWed1Reciprocal best net
White rhinocerosCeratotherium simumMay 2012CerSimSim1.0/cerSim1Syntenic net
Afrotheria subset
AardvarkOrycteropus afer aferMay 2012OryAfe1.0/oryAfe1Syntenic net
Cape elephant shrewElephantulus edwardiiAug 2012EleEdw1.0/eleEdw1Syntenic net
Cape golden moleChrysochloris asiaticaAug 2012ChrAsi1.0/chrAsi1Syntenic net
ElephantLoxodonta africanaJul 2009Broad/loxAfr3Syntenic net
ManateeTrichechus manatus latirostrisOct 2011Broad v1.0/triMan1Syntenic net
TenrecEchinops telfairiNov 2012Broad/echTel2Syntenic net
Mammal subset
ArmadilloDasypus novemcinctusDec 2011Baylor/dasNov3Syntenic net
OpossumMonodelphis domesticaOct 2006Broad/monDom5Net
PlatypusOrnithorhynchus anatinusMar 2007WUGSC 5.0.1/ornAna1Reciprocal best net
Tasmanian devilSarcophilus harrisiiFeb 2011WTSI Devil_ref v7.0/sarHar1Net
WallabyMacropus eugeniiSep 2009TWGS Meug_1.1/macEug2Reciprocal best net
Aves subset
BudgerigarMelopsittacus undulatusSep 2011WUSTL v6.3/melUnd1Net
ChickenGallus gallusNov 2011ICGSC Gallus_gallus-4.0/galGal4Net
Collared flycatcherFicedula albicollisJun 2013FicAlb1.5/ficAlb2Net
Mallard duckAnas platyrhynchosApr 2013BGI_duck_1.0/anaPla1Net
Medium ground finchGeospiza fortisApr 2012GeoFor_1.0/geoFor1Net
ParrotAmazona vittataJan 2013AV1/amaVit1Net
Peregrine falconFalco peregrinusFeb 2013F_peregrinus_v1.0/falPer1Net
Rock pigeonColumba liviaFeb 2013Cliv_1.0/colLiv1Net
Saker falconFalco cherrugFeb 2013F_cherrug_v1.0/falChe1Net
Scarlet macawAra macaoJun 2013SMACv1.1/araMac1Net
Tibetan ground jayPseudopodoces humilisJan 2013PseHum1.0/pseHum1Net
TurkeyMeleagris gallopavoDec 2009TGC Turkey_2.01/melGal1Net
White-throated sparrowZonotrichia albicollisApr 2013ASM38545v1/zonAlb1Net
Zebra finchTaeniopygia guttataFeb 2013WashU taeGut324/taeGut2Net
Sarcopterygii subset
American alligatorAlligator mississippiensisAug 2012allMis0.2/allMis1Net
Chinese softshell turtlePelodiscus sinensisOct 2011PelSin_1.0/pelSin1Net
CoelacanthLatimeria chalumnaeAug 2011Broad/latCha1Net
Green seaturtleChelonia mydasMar 2013CheMyd_1.0/cheMyd1Net
LizardAnolis carolinensisMay 2010Broad AnoCar2.0/anoCar2Net
Painted turtleChrysemys picta belliiDec 2011v3.0.1/chrPic1Net
Spiny softshell turtleApalone spiniferaMay 2013ASM38561v1/apaSpi1Net
X. tropicalisXenopus tropicalisSep 2012JGI 7.0/xenTro7Net
Fish subset
Atlantic codGadus morhuaMay 2010Genofisk GadMor_May2010/gadMor1Net
Burton's mouthbreederHaplochromis burtoniOct 2011AstBur1.0/hapBur1Net
FuguTakifugu rubripesOct 2011FUGU5/fr3Net
LampreyPetromyzon marinusSep 2010WUGSC 7.0/petMar2Net
MedakaOryzias latipesOct 2005NIG/UT MEDAKA1/oryLat2Net
Mexican tetra (cavefish)Astyanax mexicanusApr 2013Astyanax_mexicanus-1.0.2/astMex1Net
Nile tilapiaOreochromis niloticusJan 2011Broad oreNil1.1/oreNil2Net
Princess of BurundiNeolamprologus brichardiMay 2011NeoBri1.0/neoBri1Net
Pundamilia nyerereiPundamilia nyerereiOct 2011PunNye1.0/punNye1Net
Southern platyfishXiphophorus maculatusJan 2012Xiphophorus_maculatus-4.4.2/xipMac1Net
Spotted garLepisosteus oculatusDec 2011LepOcu1/lepOcu1Net
SticklebackGasterosteus aculeatusFeb 2006Broad/gasAcu1Net
TetraodonTetraodon nigroviridisMar 2007Genoscope 8.0/tetNig2Net
Yellowbelly pufferfishTakifugu flavidusMay 2013version 1 of Takifugu flavidus genome/takFla1Net
Zebra mbunaMaylandia zebraMar 2012MetZeb1.1/mayZeb1Net
ZebrafishDanio rerioJul 2010Zv9/danRer7Net

\ Table 1. Genome assemblies included in the 100-way Conservation track.
\

\ \

Display Conventions and Configuration

\

\ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the\ size of the score.\ The conservation wiggles can be configured in a variety of ways to\ highlight different aspects of the displayed information.\ Click the Graph configuration help link for an explanation\ of the configuration options.

\

\ Pairwise alignments of each species to the human genome are\ displayed below the conservation histogram as a grayscale density plot (in\ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation\ as scored by phastCons.

\

\ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display.\ Note that excluding species from the pairwise display does not alter the\ the conservation score display.

\

\ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.

\ \

Gap Annotation

\

\ The Display chains between alignments configuration option\ enables display of gaps between alignment blocks in the pairwise alignments in\ a manner similar to the Chain track display. The following\ conventions are used:\

\ \

Genomic Breaks

\

\ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows:\

\ \

Base Level

\

\ When zoomed-in to the base-level display, the track shows the base\ composition of each alignment. The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those\ alignment positions relative to the longest non-human sequence.\ If there is sufficient space in the display, the size of the gap is shown.\ If the space is insufficient and the gap size is a multiple of 3, a\ "*" is displayed; other gap sizes are indicated by "+".

\

\ Codon translation is available in base-level display mode if the\ displayed region is identified as a coding segment. To display this annotation,\ select the species for translation from the pull-down menu in the Codon\ Translation configuration section at the top of the page. Then, select one of\ the following modes:\

\

\ Codon translation uses the following gene tracks as the basis for translation:\ \

\ \ \ \ \ \
Gene TrackSpecies
UCSC GenesHuman, Mouse
RefSeq GenesCow, Frog (X. tropicalis)
Ensembl Genes v73Atlantic cod, Bushbaby, Cat, Chicken, Chimp, Coelacanth, Dog, Elephant, Ferret, Fugu, Gorilla, Horse, Lamprey, Little brown bat, Lizard, Mallard duck, Marmoset, Medaka, Orangutan, Panda, Pig, Platypus, Rat, Soft-shell Turtle, Southern platyfish, Squirrel, Tasmanian devil, Tetraodon, Zebrafish
no annotationAardvark, Alpaca, American alligator, Armadillo, Baboon, Bactrian camel, Big brown bat, Black flying-fox, Brush-tailed rat, Budgerigar, Burton's mouthbreeder, Cape elephant shrew, Cape golden mole, Chinchilla, Chinese hamster, Chinese tree shrew, Collared flycatcher, Crab-eating macaque, David's myotis (bat), Dolphin, Domestic goat, Gibbon, Golden hamster, Green monkey, Green seaturtle, Hedgehog, Killer whale, Lesser Egyptian jerboa, Manatee, Medium ground finch, Mexican tetra (cavefish), Naked mole-rat, Nile tilapia, Pacific walrus, Painted turtle, Parrot, Peregrine falcon, Pika, Prairie vole, Princess of Burundi, Pundamilia nyererei, Rhesus, Rock pigeon, Saker falcon, Scarlet Macaw, Sheep, Shrew, Spiny softshell turtle, Spotted gar, Squirrel monkey, Star-nosed mole, Tawny puffer fish, Tenrec, Tibetan antelope, Tibetan ground jay, Wallaby, Weddell seal, White rhinoceros, White-throated sparrow, Zebra Mbuna, Zebra finch
\ Table 2. Gene tracks used for codon translation.\

\ \

Methods

\

\ Pairwise alignments with the human genome were generated for\ each species using lastz from repeat-masked genomic sequence.\ Pairwise alignments were then linked into chains using a dynamic programming\ algorithm that finds maximally scoring chains of gapless subsections\ of the alignments organized in a kd-tree.\ The scoring matrix and parameters for pairwise alignment and chaining\ were tuned for each species based on phylogenetic distance from the reference.\ High-scoring chains were then placed along the genome, with\ gaps filled by lower-scoring chains, to produce an alignment net.\ For more information about the chaining and netting process and\ parameters for each species, see the description pages for the Chain and Net\ tracks.

\

\ An additional filtering step was introduced in the generation of the 60-way\ conservation track to reduce the number of paralogs and pseudogenes from the\ high-quality assemblies and the suspect alignments from the low-quality\ assemblies:\ the pairwise alignments of high-quality mammalian\ sequences (placental and marsupial) were filtered based on synteny;\ those for 2X mammalian genomes were filtered to retain only\ alignments of best quality in both the target and query ("reciprocal\ best").

\

\ The resulting best-in-genome pairwise alignments\ were progressively aligned using multiz/autoMZ,\ following the tree topology diagrammed above, to produce multiple alignments.\ The multiple alignments were post-processed to\ add annotations indicating alignment gaps, genomic breaks,\ and base quality of the component sequences.\ The annotated multiple alignments, in MAF format, are available for\ bulk download.\ An alignment summary table containing an entry for each\ alignment block in each species was generated to improve\ track display performance at large scales.\ Framing tables were constructed to enable\ visualization of codons in the multiple alignment display.

\ \

Phylogenetic Tree Model

\

\ Both phastCons and phyloP are phylogenetic methods that rely\ on a tree model containing the tree topology, branch lengths representing\ evolutionary distance at neutrally evolving sites, the background distribution\ of nucleotides, and a substitution rate matrix.\ The\ all-species tree model for this track was\ generated using the phyloFit program from the PHAST package\ (REV model, EM algorithm, medium precision) using multiple alignments of\ 4-fold degenerate sites extracted from the 60-way alignment\ (msa_view). The 4d sites were derived from the RefSeq (Reviewed+Coding) gene\ set, filtered to select single-coverage long transcripts.\

\

\ This same tree model was used in the phyloP calculations; however, the\ background frequencies were modified to maintain reversibility.\ The resulting tree model:\ all species.\

\

PhastCons Conservation

\

\ The phastCons program computes conservation scores based on a phylo-HMM, a\ type of probabilistic model that describes both the process of DNA\ substitution at each site in a genome and the way this process changes from\ one site to the next (Felsenstein and Churchill 1996, Yang 1995, Siepel and\ Haussler 2005). PhastCons uses a two-state phylo-HMM, with a state for\ conserved regions and a state for non-conserved regions. The value plotted\ at each site is the posterior probability that the corresponding alignment\ column was "generated" by the conserved state of the phylo-HMM. These\ scores reflect the phylogeny (including branch lengths) of the species in\ question, a continuous-time Markov model of the nucleotide substitution\ process, and a tendency for conservation levels to be autocorrelated along\ the genome (i.e., to be similar at adjacent sites). The general reversible\ (REV) substitution model was used. Unlike many conservation-scoring programs,\ phastCons does not rely on a sliding window\ of fixed size; therefore, short highly-conserved regions and long moderately\ conserved regions can both obtain high scores.\ More information about\ phastCons can be found in Siepel et al. 2005.

\

\ The phastCons parameters used were: expected-length=45,\ target-coverage=0.3, rho=0.3.

\ \

PhyloP Conservation

\

\ The phyloP program supports several different methods for computing\ p-values of conservation or acceleration, for individual nucleotides or\ larger elements (\ http://compgen.cshl.edu/phast/). Here it was used\ to produce separate scores at each base (--wig-scores option), considering\ all branches of the phylogeny rather than a particular subtree or lineage\ (i.e., the --subtree option was not used). The scores were computed by\ performing a likelihood ratio test at each alignment column (--method LRT),\ and scores for both conservation and acceleration were produced (--mode\ CONACC).\

\

Conserved Elements

\

\ The conserved elements were predicted by running phastCons with the\ --viterbi option. The predicted elements are segments of the alignment\ that are likely to have been "generated" by the conserved state of the\ phylo-HMM. Each element is assigned a log-odds score equal to its log\ probability under the conserved model minus its log probability under the\ non-conserved model. The "score" field associated with this track contains\ transformed log-odds scores, taking values between 0 and 1000. (The scores\ are transformed using a monotonic function of the form a * log(x) + b.) The\ raw log odds scores are retained in the "name" field and can be seen on the\ details page or in the browser when the track's display mode is set to\ "pack" or "full".\

\ \

Credits

\

This track was created using the following programs:\

\

\

The phylogenetic tree is based on Murphy et al. (2001) and general\ consensus in the vertebrate phylogeny community. Thanks to Giacomo Bernardi for\ help with the fish relationships.\

\ \

References

\ \

Phylo-HMMs, phastCons, and phyloP:

\

\ Felsenstein J, Churchill GA.\ A Hidden Markov Model approach to\ variation among sites in rate of evolution.\ Mol Biol Evol. 1996 Jan;13(1):93-104.\ PMID: 8583911\

\ \

\ Pollard KS, Hubisz MJ, Rosenbloom KR, Siepel A.\ \ Detection of nonneutral substitution rates on mammalian phylogenies.\ Genome Res. 2010 Jan;20(1):110-21.\ PMID: 19858363; PMC: PMC2798823\

\ \

\ Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K,\ Clawson H, Spieth J, Hillier LW, Richards S, et al.\ Evolutionarily conserved elements in vertebrate, insect, worm,\ and yeast genomes.\ Genome Res. 2005 Aug;15(8):1034-50.\ PMID: 16024819; PMC: PMC1182216\

\ \

\ Siepel A, Haussler D.\ Phylogenetic Hidden Markov Models.\ In: Nielsen R, editor. Statistical Methods in Molecular Evolution.\ New York: Springer; 2005. pp. 325-351.\

\ \

\ Yang Z.\ A space-time process model for the evolution of DNA\ sequences.\ Genetics. 1995 Feb;139(2):993-1005.\ PMID: 7713447; PMC: PMC1206396\

\ \

Chain/Net:

\

\ Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\ Evolution's cauldron:\ duplication, deletion, and rearrangement in the mouse and human genomes.\ Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\ PMID: 14500911; PMC: PMC208784\

\ \

Multiz:

\

\ Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, Roskin KM,\ Baertsch R, Rosenbloom K, Clawson H, Green ED, et al.\ Aligning multiple genomic sequences with the threaded blockset aligner.\ Genome Res. 2004 Apr;14(4):708-15.\ PMID: 15060014; PMC: PMC383317\

\ \

Lastz (formerly Blastz):

\

\ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput. 2002:115-26.\ PMID: 11928468\

\ \

\ Harris RS.\ Improved pairwise alignment of genomic DNA.\ Ph.D. Thesis. Pennsylvania State University, USA. 2007.\

\ \

\ Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC,\ Haussler D, Miller W.\ Human-mouse alignments with BLASTZ.\ Genome Res. 2003 Jan;13(1):103-7.\ PMID: 12529312; PMC: PMC430961\

\ \ \

Phylogenetic Tree:

\

\ Murphy WJ, Eizirik E, O'Brien SJ, Madsen O, Scally M, Douady CJ, Teeling E,\ Ryder OA, Stanhope MJ, de Jong WW, Springer MS.\ Resolution of the early placental mammal radiation using Bayesian phylogenetics.\ Science. 2001 Dec 14;294(5550):2348-51.\ PMID: 11743200\

\ compGeno 1 compositeTrack on\ dimensions dimensionX=clade\ dragAndDrop subTracks\ group compGeno\ longLabel Vertebrate Multiz Alignment & Conservation (100 Species)\ priority 1\ shortLabel Conservation\ subGroup1 view Views align=Multiz_Alignments phyloP=Basewise_Conservation_(phyloP) phastcons=Element_Conservation_(phastCons) elements=Conserved_Elements\ subGroup2 clade Clade primate=Primate mammal=Mammal vert=Vertebrate all=All_species\ track cons100way\ type bed 4\ visibility full\ cons100wayViewelements Conserved Elements bed 4 Vertebrate Multiz Alignment & Conservation (100 Species) 0 1 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Vertebrate Multiz Alignment & Conservation (100 Species)\ parent cons100way\ shortLabel Conserved Elements\ track cons100wayViewelements\ view elements\ visibility hide\ affyExonProbesetCore Core PS bed 12 Affymetrix Human Exon Array Core Probesets 1 1 65 105 225 160 180 240 0 0 0 expression 1 color 65,105,225\ longLabel Affymetrix Human Exon Array Core Probesets\ parent affyExonProbeset\ shortLabel Core PS\ subGroups view=v1Probeset level=L1Core\ track affyExonProbesetCore\ covidHgiGwasC2 COVID GWAS bigLolly 9 + COVID GWAS from the COVID-19 Host Genetics Initiative (6696 cases, 18 studies) 0 1 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22, varRep 1 bigDataUrl /gbdb/hg19/covidHgiGwas/covidHgiGwasC2.hg19.bb\ longLabel COVID GWAS from the COVID-19 Host Genetics Initiative (6696 cases, 18 studies)\ parent covidHgiGwas on\ shortLabel COVID GWAS\ track covidHgiGwasC2\ cpgIslandExt CpG Islands bed 4 + CpG Islands (Islands < 300 Bases are Light Green) 3 1 0 100 0 128 228 128 0 0 0

Description

\ \

CpG islands are associated with genes, particularly housekeeping\ genes, in vertebrates. CpG islands are typically common near\ transcription start sites and may be associated with promoter\ regions. Normally a C (cytosine) base followed immediately by a \ G (guanine) base (a CpG) is rare in\ vertebrate DNA because the Cs in such an arrangement tend to be\ methylated. This methylation helps distinguish the newly synthesized\ DNA strand from the parent strand, which aids in the final stages of\ DNA proofreading after duplication. However, over evolutionary time,\ methylated Cs tend to turn into Ts because of spontaneous\ deamination. The result is that CpGs are relatively rare unless\ there is selective pressure to keep them or a region is not methylated\ for some other reason, perhaps having to do with the regulation of gene\ expression. CpG islands are regions where CpGs are present at\ significantly higher levels than is typical for the genome as a whole.

\ \

\ The unmasked version of the track displays potential CpG islands\ that exist in repeat regions and would otherwise not be visible\ in the repeat masked version.\

\ \

\ By default, only the masked version of the track is displayed. To view the\ unmasked version, change the visibility settings in the track controls at\ the top of this page.\

\ \

Methods

\ \

CpG islands were predicted by searching the sequence one base at a\ time, scoring each dinucleotide (+17 for CG and -1 for others) and\ identifying maximally scoring segments. Each segment was then\ evaluated for the following criteria:\ \

\

\

\ The entire genome sequence, masking areas included, was\ used for the construction of the track Unmasked CpG.\ The track CpG Islands is constructed on the sequence after\ all masked sequence is removed.\

\ \

The CpG count is the number of CG dinucleotides in the island. \ The Percentage CpG is the ratio of CpG nucleotide bases\ (twice the CpG count) to the length. The ratio of observed to expected \ CpG is calculated according to the formula (cited in \ Gardiner-Garden et al. (1987)):\ \ 

    Obs/Exp CpG = Number of CpG * N / (Number of C * Number of G)
\ \ where N = length of sequence.

\

\ The calculation of the track data is performed by the following command sequence:\ 

\
twoBitToFa assembly.2bit stdout | maskOutFa stdin hard stdout \\\
  | cpg_lh /dev/stdin 2> cpg_lh.err \\\
    |  awk '{$2 = $2 - 1; width = $3 - $2;  printf("%s\\t%d\\t%s\\t%s %s\\t%s\\t%s\\t%0.0f\\t%0.1f\\t%s\\t%s\\n", $1, $2, $3, $5, $6, width, $6, width*$7*0.01, 100.0*2*$6/width, $7, $9);}' \\\
     | sort -k1,1 -k2,2n > cpgIsland.bed\
\ The unmasked track data is constructed from\ twoBitToFa -noMask output for the twoBitToFa command.\

\ \

Data access

\

\ CpG islands and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator.\ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.

\

\ The source for the cpg_lh program can be obtained from\ src/utils/cpgIslandExt/.\ The cpg_lh program binary can be obtained from: http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/cpg_lh (choose "save file")\

\ \

Credits

\ \

This track was generated using a modification of a program developed by G. Miklem and L. Hillier \ (unpublished).

\ \

References

\ \

\ Gardiner-Garden M, Frommer M.\ \ CpG islands in vertebrate genomes.\ J Mol Biol. 1987 Jul 20;196(2):261-82.\ PMID: 3656447\

\ regulation 1 html cpgIslandSuper\ longLabel CpG Islands (Islands < 300 Bases are Light Green)\ parent cpgIslandSuper pack\ priority 1\ shortLabel CpG Islands\ track cpgIslandExt\ wgEncodeCrgMapabilityAlign24mer CRG Align 24 bigWig 0.00 1.00 Alignability of 24mers by GEM from ENCODE/CRG(Guigo) 0 1 0 100 0 127 177 127 0 0 0 map 1 color 0,100,0\ longLabel Alignability of 24mers by GEM from ENCODE/CRG(Guigo)\ origAssembly hg19\ parent wgEncodeMapabilityViewCRGMAP off\ shortLabel CRG Align 24\ subGroups view=CRGMAP win=w024 lab=CRG\ track wgEncodeCrgMapabilityAlign24mer\ type bigWig 0.00 1.00\ iscaCuratedBenign Curated Ben gvf ClinGen CNVs: Curated Benign 3 1 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/?term=$$ phenDis 1 longLabel ClinGen CNVs: Curated Benign\ parent iscaViewDetail off\ shortLabel Curated Ben\ subGroups view=cnv class=ben level=cur\ track iscaCuratedBenign\ dbVar_common_1000g dbVar Curated 1000 Genomes SVs bigBed 9 + . NCBI dbVar Curated Common SVs: all populations from 1000 Genomes 3 1 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg19/bbi/dbVar/common_1000g.bb\ longLabel NCBI dbVar Curated Common SVs: all populations from 1000 Genomes\ parent dbVar_common on\ shortLabel dbVar Curated 1000 Genomes SVs\ track dbVar_common_1000g\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ dbVar_conflict_pathogenic dbVar Curated Conflict SVs bigBed 9 + . NCBI dbVar Curated Common SVs: Conflicts with Pathogenic 3 1 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg19/bbi/dbVar/conflict_pathogenic.bb\ longLabel NCBI dbVar Curated Common SVs: Conflicts with Pathogenic\ parent dbVar_conflict on\ shortLabel dbVar Curated Conflict SVs\ track dbVar_conflict_pathogenic\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ uMassBrainHistonePeaksInfant Developmental bed5FloatScore Developmental Brain Histone H3K4me3 from UMMS 3 1 30 118 30 142 186 142 1 0 0 regulation 1 color 30,118,30\ longLabel Developmental Brain Histone H3K4me3 from UMMS\ parent uMassBrainHistoneViewPeaks\ shortLabel Developmental\ subGroups view=Peaks cellType=norm donor=a_pooled sex=mixed age=a_infant\ track uMassBrainHistonePeaksInfant\ type bed5FloatScore\ dgvMerged DGV Struct Var bigBed 9 + Database of Genomic Variants: Structural Var Regions (CNV, Inversion, In/del) 0 1 0 0 0 127 127 127 0 0 0 http://dgv.tcag.ca/dgv/app/variant?id=$$&ref=$D varRep 1 bigDataUrl /gbdb/hg19/dgv/dgvMerged.bb\ dataVersion 2020-02-25\ filter._size 1:9734324\ filterByRange._size on\ filterLabel._size Genomic size of variant\ filterValues.varType complex,deletion,duplication,gain,gain+loss,insertion,inversion,loss,mobile element insertion,novel sequence insertion,sequence alteration,tandem duplication\ longLabel Database of Genomic Variants: Structural Var Regions (CNV, Inversion, In/del)\ mouseOver ID:$name; Position; $chrom:${chromStart}-${chromEnd}; Size:$_size; Type:$varType; Affected genes:$genes\ parent dgvPlus on\ priority 1\ searchIndex name\ shortLabel DGV Struct Var\ track dgvMerged\ type bigBed 9 +\ dhcVcfDNK02 Dinka Variants vcfTabix Dinka Individual Variant Calls 0 1 0 0 0 127 127 127 0 0 0 denisova 1 longLabel Dinka Individual Variant Calls\ parent dhcVcfModern\ priority 1\ shortLabel Dinka Variants\ track dhcVcfDNK02\ vcfDoMaf off\ eioJcviNASPos EIO/JCVI CD34+ NAS bed 3 . CD34+ cells Nuclease Accessible Sites 0 1 100 30 150 177 142 202 0 0 0 regulation 1 color 100,30,150\ longLabel CD34+ cells Nuclease Accessible Sites\ parent eioJcviNAS\ priority 1\ shortLabel EIO/JCVI CD34+ NAS\ track eioJcviNASPos\ cons100wayViewphastcons Element Conservation (phastCons) bed 4 Vertebrate Multiz Alignment & Conservation (100 Species) 0 1 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Vertebrate Multiz Alignment & Conservation (100 Species)\ parent cons100way\ shortLabel Element Conservation (phastCons)\ track cons100wayViewphastcons\ view phastcons\ visibility hide\ wgEncodeReg ENCODE Regulation Integrated Regulation from ENCODE 0 1 0 0 0 127 127 127 0 0 0

Description

\

These tracks contain information relevant to the regulation of transcription from the \ ENCODE project. The Transcription track shows transcription \ levels assayed by sequencing of polyadenylated RNA from a variety of cell types. The Overlayed\ H3K4Me1 and Overlayed H3K27Ac tracks show where modification of histone proteins\ is suggestive of enhancer and, to a lesser extent, other regulatory activity. These histone \ modifications, particularly H3K4Me1, are quite broad. The actual enhancers are typically just a \ small portion of the area marked by these histone modifications. The Overlay H3K4Me3 \ track shows a histone mark associated with promoters. The DNase Clusters track shows regions \ where the chromatin is hypersensitive to cutting by the DNase enzyme, which has \ been assayed in a large number of cell types. Regulatory regions, in general, tend to be \ DNase sensitive, and promoters are particularly DNase sensitive. \ The Txn Factor ChIP\ tracks show DNA regions where transcription factors, proteins responsible for \ modulating gene transcription, bind as assayed by chromatin immunoprecipitation with antibodies \ specific to the transcription factor followed by sequencing of the precipitated DNA (ChIP-seq).\

\

\ These tracks complement each other and together can shed much light on regulatory DNA. The histone\ marks are informative at a high level, but they have a resolution of just ~200 bases and do not\ provide much in the way of functional detail. The DNase hypersensitive assay is higher in\ resolution at the DNA level and can be done on a large number of cell types since it's just \ a single assay. At the functional level, DNase hypersensitivity suggests that a \ region is very likely to be regulatory in nature, but provides little information beyond that. The transcription \ factor ChIP assay has a high resolution at the DNA level, and, due to the very specific nature \ of the transcription factors, is often informative with respect to functional detail. However, since each \ transcription factor must be assayed separately, the information is\ only available for a limited number of transcription factors on a limited number of cell lines. \ Though each assay has its strengths and weaknesses, the fact that all of these assays are \ relatively independent of each other gives increased confidence when multiple tracks are \ suggesting a regulatory function for a region.\

\ For additional information please click on the hyperlinks for the individual tracks above.\ Also note that additional histone marks and transcription information is available in other\ ENCODE tracks. This integrative Super-track just shows a selection of the most informative data of\ general interest.\

Display conventions

\

\ By default, the transcription and histone mark displays use a transparent overlay method of \ displaying data from a number of cell lines in a single track. Each of the cell lines in this track is associated with a particular\ color, and these colors are relatively light and saturated so\ as to work best with the transparent overlay. Unfortunately, outside the ENCODE Regulation tracks, older cell line\ color conventions are used that don't match the cell line colors used in\ the ENCODE Regulation tracks. The older colors were not used in the\ ENCODE Regulation tracks because they were too dark for the transparent\ overlay. The DNase and Transcription Factor ChIP tracks contain information on so many cell lines that a color convention\ is inadequate. Instead, these tracks show gray boxes where the darkness of \ the box is proportional to the maximum value seen in any cell line in that region. Clicking on\ the item takes you to a details page where the values for each cell line assayed are displayed.\

\

Data Access

\

\ The raw data for ENCODE 3 Regulation tracks can be accessed from\ \ Table Browser or combined with other data-sets through \ Data Integrator. For automated analysis and downloads, the track data files can be downloaded\ from our downloads server or queried \ using the JSON API or \ Public SQL. Individual regions or the whole genome\ annotation can be accessed as text using our utility bigBedToBed. Instructions for \ downloading the utility can be found\ here. That\ utility can also be used to obtain features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/wgEncodeRegDnase/wgEncodeRegDnaseUwA549Hotspot.broadPeak.bb -chrom=chr21 -start=0 -end=100000000 stdout

\

\ For sorting transcription factor binding sites by cell type, we recommend you use the following\ download\ file for hg19.\

\ \ \

Credits

\

\ Specific labs and contributors for these datasets are listed in the Credits section \ of the individual tracks in this super-track. \ The integrative view presented here was developed by Jim Kent at UCSC.

\ \

Data Use Policy

\

Users may freely download, analyze and publish results based on any ENCODE data without \ restrictions.\ Researchers using unpublished ENCODE data are encouraged to contact the data producers to discuss possible coordinated publications; however, this is optional.

\ Users of ENCODE datasets are requested to cite the ENCODE Consortium and ENCODE\ production laboratory(s) that generated the datasets used, as described in\ Citing ENCODE.

\ \ regulation 1 canPack On\ group regulation\ longLabel Integrated Regulation from ENCODE\ priority 1\ shortLabel ENCODE Regulation\ superTrack on show\ track wgEncodeReg\ exacRegions ExAC Regions bigBed 6 ExAC Calling Regions 0 1 0 0 0 127 127 127 0 0 24 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY, varRep 1 bigDataUrl /gbdb/hg19/ExAC/exacCallingRegions.bb\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY\ longLabel ExAC Calling Regions\ parent exac\ shortLabel ExAC Regions\ track exacRegions\ type bigBed 6\ bamSLFeld1 Feld1 Sequence bam Feld1 Sequence Reads 0 1 0 0 0 127 127 127 0 0 0 neandertal 1 longLabel Feld1 Sequence Reads\ parent ntSeqReads\ shortLabel Feld1 Sequence\ subGroups sample=Feld1\ track bamSLFeld1\ fixSeqLiftOverPsl Fix Patches psl Reference Assembly Fix Patch Sequence Alignments 3 1 231 203 21 243 229 138 0 0 0

Description

\ \

\ This track shows alignments of fix patch sequences to\ main chromosome sequences in the reference genome assembly.\ When errors are corrected in the reference genome assembly, the\ Genome Reference Consortium\ (GRC) adds fix patch sequences containing the corrected regions.\ This strikes a balance between providing the most complete and correct genome\ sequence, while maintaining stable chromosome coordinates for the original assembly\ sequences.\

\

\ Fix patches are often associated with incident reports displayed in the GRC Incidents\ track.\

\ \

Display Conventions and Configuration

\ \

\ This track follows the display conventions for\ \ PSL alignment tracks.\ Mismatching bases are highlighted in red.\ Several types of alignment gap may also be colored;\ for more information, see\ \ Alignment Insertion/Deletion Display Options.\

\ \

Credits

\

\ The alignments were provided by NCBI as GFF files and translated into the PSL\ representation for browser display by UCSC.\

\ map 1 baseColorDefault diffBases\ baseColorUseSequence db\ color 231,203,21\ darkerLabels on\ group map\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Reference Assembly Fix Patch Sequence Alignments\ pennantIcon p14 black https://genome-blog.gi.ucsc.edu/blog/patches/ "Includes annotations on GRCh38.p14 patch sequences"\ priority 1\ shortLabel Fix Patches\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ track fixSeqLiftOverPsl\ type psl\ visibility pack\ dhcHumDerDenAncAllFixed Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: All 3 1 0 0 0 127 127 127 0 0 0 denisova 1 color 0,0,0\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: All\ parent dhcHumDerDenAncAll\ shortLabel Fxd\ subGroups view=All subset=All freq=Fixed\ track dhcHumDerDenAncAllFixed\ geneHancerRegElementsDoubleElite GH Reg Elems (DE) bigBed 9 + Enhancers and promoters from GeneHancer (Double Elite) 1 1 0 0 0 127 127 127 0 0 0 http://www.genecards.org/Search/Keyword?queryString=$$ regulation 1 bigDataUrl /gbdb/hg19/geneHancer/geneHancerRegElementsDoubleElite.hg19.bb\ longLabel Enhancers and promoters from GeneHancer (Double Elite)\ parent ghGeneHancer on\ shortLabel GH Reg Elems (DE)\ subGroups set=a_ELITE view=a_GH\ track geneHancerRegElementsDoubleElite\ wgEncodeGisRnaPetGm12878CytosolPapClustersRep1V2 GM12 cyto pA+ 1 bed 6 + GM12878 cytosol polyA+ clone-based RNA PET Clusters Rep 1 from ENCODE/GIS 2 1 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA+ clone-based RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel GM12 cyto pA+ 1\ subGroups view=v1Clusters cellType=aGM12878 cloned=Based localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetGm12878CytosolPapClustersRep1V2\ type bed 6 +\ wgEncodeGisRnaSeqGm12878CytosolPapAlnRep1 GM12 cyto pA+ 1 bam GM12878 cytosol polyA+ RNA-seq Alignments rep 1 from ENCODE/GIS 1 1 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA+ RNA-seq Alignments rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaSeqViewAlignments on\ shortLabel GM12 cyto pA+ 1\ subGroups view=Alignments cellType=t1GM12878 rnaExtract=longPolyA rep=rep1 localization=cytosol\ track wgEncodeGisRnaSeqGm12878CytosolPapAlnRep1\ type bam\ wgEncodeBroadHistoneGm12878H3k4me1StdSig GM12878 bigWig 0 5199 H3K4Me1 Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE 0 1 255 128 128 255 191 191 0 0 0 regulation 1 color 255,128,128\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE\ parent wgEncodeRegMarkH3k4me1\ shortLabel GM12878\ track wgEncodeBroadHistoneGm12878H3k4me1StdSig\ type bigWig 0 5199\ wgEncodeBroadHistoneGm12878H3k4me3StdSig GM12878 bigWig 0 52815 H3K4Me3 Mark (Often Found Near Promoters) on GM12878 Cells from ENCODE 0 1 255 128 128 255 191 191 0 0 0 regulation 1 color 255,128,128\ longLabel H3K4Me3 Mark (Often Found Near Promoters) on GM12878 Cells from ENCODE\ parent wgEncodeRegMarkH3k4me3\ shortLabel GM12878\ track wgEncodeBroadHistoneGm12878H3k4me3StdSig\ type bigWig 0 52815\ wgEncodeRegTxnCaltechRnaSeqGm12878R2x75Il200SigPooled GM12878 bigWig 0 65535 Transcription of GM12878 cells from ENCODE 0 1 255 128 128 255 191 191 0 0 0 regulation 1 color 255,128,128\ longLabel Transcription of GM12878 cells from ENCODE\ parent wgEncodeRegTxn\ priority 1\ shortLabel GM12878\ track wgEncodeRegTxnCaltechRnaSeqGm12878R2x75Il200SigPooled\ type bigWig 0 65535\ wgEncodeRegMarkH3k27acGm12878 GM12878 bigWig 0 223899 H3K27Ac Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE 2 1 255 128 128 255 191 191 0 0 0 regulation 1 color 255,128,128\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE\ parent wgEncodeRegMarkH3k27ac\ shortLabel GM12878\ table wgEncodeBroadHistoneGm12878H3k27acStdSig\ track wgEncodeRegMarkH3k27acGm12878\ type bigWig 0 223899\ wgEncodeHaibMethyl450Gm12878SitesRep1 GM12878 bed 9 GM12878 Methylation 450K Bead Array from ENCODE/HAIB 1 1 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12878 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 on\ shortLabel GM12878\ subGroups cellType=t1GM12878 obtainedBy=HAIB treatment=zNONE\ track wgEncodeHaibMethyl450Gm12878SitesRep1\ type bed 9\ wgEncodeDukeAffyExonGm12878SimpleSignalRep1V2 GM12878 1 bigBed 6 + GM12878 Exon array Signal Rep 1 from ENCODE/Duke 0 1 153 38 0 204 146 127 1 0 0 expression 1 color 153,38,0\ longLabel GM12878 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon\ shortLabel GM12878 1\ subGroups cellType=t1GM12878 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonGm12878SimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeHaibGenotypeGm12878RegionsRep1V2 GM12878 1 bed 9 + GM12878 Copy number variants Replicate 1 from ENCODE/HAIB 0 1 0 0 0 127 127 127 0 0 0 varRep 1 longLabel GM12878 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype on\ shortLabel GM12878 1\ subGroups cellType=t1GM12878 obtainedBy=HudsonAlpha treatment=None rep=rep1\ track wgEncodeHaibGenotypeGm12878RegionsRep1V2\ type bed 9 +\ wgEncodeUwAffyExonArrayGm12878SimpleSignalRep1 GM12878 1 broadPeak GM12878 Exon array Signal Rep 1 from ENCODE/UW 0 1 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray on\ shortLabel GM12878 1\ subGroups cellType=t1GM12878 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayGm12878SimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethylRrbsGm12878HaibSitesRep1 GM12878 1 bed 9 + GM12878 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 1 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs on\ shortLabel GM12878 1\ subGroups cellType=t1GM12878 obtainedBy=HAIB treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsGm12878HaibSitesRep1\ type bed 9 +\ wgEncodeGisDnaPetGm12878F1kAln GM12878 1k bam ENCODE GIS DNA PET Alignments (1k frags in GM12878 cells) 1 1 153 38 0 204 146 127 0 0 0 varRep 1 color 153,38,0\ longLabel ENCODE GIS DNA PET Alignments (1k frags in GM12878 cells)\ parent wgEncodeGisDnaPetViewAlignments off\ shortLabel GM12878 1k\ subGroups cellType=t1GM12878 fragSize=a1K\ track wgEncodeGisDnaPetGm12878F1kAln\ wgEncodeAwgTfbsHaibGm12878Atf2sc81188V0422111UniPk GM12878 ATF2 narrowPeak GM12878 TFBS Uniform Peaks of ATF2_(SC-81188) from ENCODE/HudsonAlpha/Analysis 1 1 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of ATF2_(SC-81188) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 ATF2\ subGroups tier=a10 cellType=a10GM12878 factor=ATF2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Atf2sc81188V0422111UniPk\ wgEncodeUncBsuProtGencGm12878CellIngelpepMapGcFt GM12878 Ce bigBed 12 GM12878 In-gel ProtG GENCODE11 Hg19 Mapping from ENCODE/UNC/BSU 2 1 153 38 0 204 146 127 1 0 0 expression 1 color 153,38,0\ longLabel GM12878 In-gel ProtG GENCODE11 Hg19 Mapping from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtGencViewpepMapGcFt\ shortLabel GM12878 Ce\ subGroups view=pepMapGcFt cellType=GM12878 localization=CELL protocol=INGEL\ track wgEncodeUncBsuProtGencGm12878CellIngelpepMapGcFt\ type bigBed 12\ wgEncodeSunyAlbanyGeneStGm12878Celf1RbpAssocRnaV2 GM12878 CELF1 broadPeak GM12878 CELF1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 1 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 CELF1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt\ shortLabel GM12878 CELF1\ subGroups cellType=t1GM12878 factor=CELF1\ track wgEncodeSunyAlbanyGeneStGm12878Celf1RbpAssocRnaV2\ type broadPeak\ wgEncodeAffyRnaChipFiltTransfragsGm12878CellTotal GM12878 cell tot broadPeak GM12878 whole cell total Microarray Transfrags from ENCODE Affy/CSHL 3 1 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 whole cell total Microarray Transfrags from ENCODE Affy/CSHL\ noInherit on\ parent wgEncodeAffyRnaChipViewFiltTransfrags\ shortLabel GM12878 cell tot\ subGroups view=FiltTransfrags cellType=t1GM12878 localization=aCELL rnaExtract=total\ track wgEncodeAffyRnaChipFiltTransfragsGm12878CellTotal\ type broadPeak\ wgEncodeAwgSegmentationChromhmmGm12878 GM12878 ChromHMM bed 9 . GM12878 Genome Segmentation by ChromHMM from ENCODE/Analysis 0 1 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12878 Genome Segmentation by ChromHMM from ENCODE/Analysis\ parent wgEncodeAwgSegmentation off\ shortLabel GM12878 ChromHMM\ subGroups tier=t1 cellType=t1GM12878 method=ChromHMM\ track wgEncodeAwgSegmentationChromhmmGm12878\ type bed 9 .\ wgEncodeBroadHmmGm12878HMM GM12878 ChromHMM bed 9 . GM12878 Chromatin State Segmentation by HMM from ENCODE/Broad 0 1 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12878 Chromatin State Segmentation by HMM from ENCODE/Broad\ origAssembly hg18\ parent wgEncodeBroadHmm\ shortLabel GM12878 ChromHMM\ subGroups cellType=t1GM12878\ track wgEncodeBroadHmmGm12878HMM\ type bed 9 .\ wgEncodeOpenChromChipGm12878CmycPk GM12878 cMyc Pk narrowPeak GM12878 cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 1 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks\ shortLabel GM12878 cMyc Pk\ subGroups treatment=AANONE view=Peaks factor=CMYC cellType=t1GM12878\ track wgEncodeOpenChromChipGm12878CmycPk\ type narrowPeak\ wgEncodeBroadHistoneGm12878CtcfStdPk GM12878 CTCF broadPeak GM12878 CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 1 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel GM12878 CTCF\ subGroups view=Peaks factor=CTCF cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878CtcfStdPk\ type broadPeak\ wgEncodeAwgDnaseUwdukeGm12878UniPk GM12878 DNase narrowPeak GM12878 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 1 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform on\ shortLabel GM12878 DNase\ subGroups tier=a10 cellType=a10GM12878\ track wgEncodeAwgDnaseUwdukeGm12878UniPk\ wgEncodeSunyAlbanyTilingGm12878Elavl1RbpAssocRna GM12878 ELAVL1 broadPeak GM12878 ELAVL1 RBP Associated RNA by Tiling Array from ENCODE/SUNY 3 1 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ELAVL1 RBP Associated RNA by Tiling Array from ENCODE/SUNY\ parent wgEncodeSunyAlbanyTilingView\ shortLabel GM12878 ELAVL1\ subGroups view=RbpAssocRna cellType=t1GM12878 antibody=ELAVL1\ track wgEncodeSunyAlbanyTilingGm12878Elavl1RbpAssocRna\ type broadPeak\ wgEncodeSunyRipSeqGm12878Elavl1AlnRep1 GM12878 ELAVL1 1 bam GM12878 ELAVL1 RIP-seq Alignments Rep 1 from ENCODE/SUNY 0 1 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ELAVL1 RIP-seq Alignments Rep 1 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewAlignments off\ shortLabel GM12878 ELAVL1 1\ subGroups view=Alignments factor=ELAVL1 cellType=t1GM12878 rep=rep1\ track wgEncodeSunyRipSeqGm12878Elavl1AlnRep1\ type bam\ wgEncodeOpenChromFaireGm12878Pk GM12878 FAIRE Pk narrowPeak GM12878 FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 1 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks\ shortLabel GM12878 FAIRE Pk\ subGroups view=Peaks cellType=t1GM12878 treatment=AANONE\ track wgEncodeOpenChromFaireGm12878Pk\ type narrowPeak\ wgEncodeUwRepliSeqGm12878G1bPctSignalRep1 GM12878 G1b 1 bigWig 1.000000 100.000000 GM12878 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 1 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel GM12878 G1b 1\ subGroups view=v1PctSignal cellType=t1GM12878 phase=p1G1B rep=rep1\ track wgEncodeUwRepliSeqGm12878G1bPctSignalRep1\ type bigWig 1.000000 100.000000\ gm12878Insitu GM12878 Hi-C hic In situ Hi-C Chromatin Structure on GM12878 0 1 0 0 0 127 127 127 0 0 0 regulation 1 bigDataUrl /gbdb/hg19/bbi/hic/GSE63525_GM12878_insitu_primary+replicate_combined.hic\ longLabel In situ Hi-C Chromatin Structure on GM12878\ parent rao2014Hic on\ shortLabel GM12878 Hi-C\ track gm12878Insitu\ type hic\ wgEncodeUwDnaseGm12878HotspotsRep1 GM12878 Ht 1 broadPeak GM12878 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 1 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot\ shortLabel GM12878 Ht 1\ subGroups view=Hot cellType=t1GM12878 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm12878HotspotsRep1\ type broadPeak\ wgEncodeUncBsuProtGm12878MembranefractionSig GM12878 membrane peptideMapping GM12878 Membrane Proteogenomic Hg19 Mapping Hits from ENCODE/UNC/BSU 2 1 153 38 0 204 146 127 1 0 0 expression 1 color 153,38,0\ longLabel GM12878 Membrane Proteogenomic Hg19 Mapping Hits from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtViewSignal\ shortLabel GM12878 membrane\ subGroups view=Signal cellType=t1GM12878 localization=membraneFraction protocol=INGEL\ track wgEncodeUncBsuProtGm12878MembranefractionSig\ type peptideMapping\ visibility full\ wgEncodeOpenChromDnaseGm12878Pk GM12878 Pk narrowPeak GM12878 DNaseI HS Peaks from ENCODE/Duke 3 1 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks\ shortLabel GM12878 Pk\ subGroups view=Peaks cellType=t1GM12878 treatment=zNONE\ track wgEncodeOpenChromDnaseGm12878Pk\ type narrowPeak\ wgEncodeUmassDekker5CGm12878PkV2 GM12878 Pk bed 12 GM12878 5C Peaks from ENCODE/UMass-Dekker 0 1 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 5C Peaks from ENCODE/UMass-Dekker\ parent wgEncodeUmassDekker5C\ shortLabel GM12878 Pk\ subGroups cellType=t1GM12878 region=NONE\ track wgEncodeUmassDekker5CGm12878PkV2\ type bed 12\ wgEncodeSydhNsomeGm12878Sig GM12878 Sig bigWig 0.000000 16392.599609 GM12878 Nucleosome Signal from ENCODE/Stanford/BYU 2 1 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Nucleosome Signal from ENCODE/Stanford/BYU\ origAssembly hg19\ parent wgEncodeSydhNsomeViewSignal\ shortLabel GM12878 Sig\ subGroups view=Signal cellType=t1GM12878\ track wgEncodeSydhNsomeGm12878Sig\ type bigWig 0.000000 16392.599609\ wgEncodeOpenChromSynthGm12878Pk GM12878 Syn Pk bed 9 + GM12878 DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom 0 1 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12878 DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom\ parent wgEncodeOpenChromSynth\ shortLabel GM12878 Syn Pk\ subGroups cellType=t1GM12878 treatment=aNone\ track wgEncodeOpenChromSynthGm12878Pk\ type bed 9 +\ wgEncodeCaltechRnaSeqGm12878R2x75Il200AlignsRep1V2 GM78 2x75 A 1 bam GM12878 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 1 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel GM78 2x75 A 1\ subGroups view=Aligns cellType=t1GM12878 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12878R2x75Il200AlignsRep1V2\ type bam\ wgEncodeHaibTfbsGm12878Atf2sc81188V0422111PkRep1 GM78 ATF2 V11 1 broadPeak GM12878 ATF2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ATF2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 ATF2 V11 1\ subGroups view=Peaks factor=ATF2SC81188 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Atf2sc81188V0422111PkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878Bhlhe40cIggmusPk GM78 BHL4 IgM narrowPeak GM12878 BHLHE40 NB100 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 1 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 BHLHE40 NB100 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 BHL4 IgM\ subGroups view=Peaks factor=BHLHE40NB100 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Bhlhe40cIggmusPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaAlnRep1 GM78 cel pA- A 1 bam GM12878 whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 1 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel GM78 cel pA- A 1\ subGroups view=Alignments cellType=t1GM12878 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaAlnRep1\ type bam\ wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapContigs GM78 cell TAP C bed 6 GM12878 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 1 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs on\ shortLabel GM78 cell TAP C\ subGroups view=Contigs cellType=t1GM12878 localization=CELL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapContigs\ type bed 6\ wgEncodeUwTfbsGm12878CtcfStdHotspotsRep1 GM78 CTCF Ht 1 broadPeak GM12878 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 1 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot on\ shortLabel GM78 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t1GM12878 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12878CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeRikenCageGm12878CytosolPamTssHmmV2 GM78 cyto pA- bed 6 GM12878 cytosol polyA- CAGE TSS HMM from ENCODE/RIKEN 3 1 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA- CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel GM78 cyto pA-\ subGroups view=TssHmm cellType=t1GM12878 localization=cytosol rnaExtract=pAM rep=rep0 rank=rankP\ track wgEncodeRikenCageGm12878CytosolPamTssHmmV2\ type bed 6\ wgEncodeUwHistoneGm12878H3k4me3StdHotspotsRep1 GM78 H3K4M3 Ht 1 broadPeak GM12878 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 1 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot on\ shortLabel GM78 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t1GM12878 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12878H3k4me3StdHotspotsRep1\ type broadPeak\ gnomadSvFull gnomAD All SV's bigBed 9 + gnomAD Structural Variants All 1 1 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/variant/$$?dataset=gnomad_sv_r2_1 varRep 1 bigDataUrl /gbdb/hg19/gnomAD/structuralVariants/gnomad_v2.1_sv.sites.bb\ filter.svlen 50:199840172\ filterByRange.svlen on\ filterLabel.svlen Filter by Variant Size\ filterLabel.svtype Type of Variation\ filterValues.svtype BND|Breakend,CPX|Complex,CTX|Translocation,DEL|Deletion,DUP|Duplication,INS|Insertion,INV|Inversion,MCNV|Multi-allele CNV\ itemRgb on\ longLabel gnomAD Structural Variants All\ mouseOverField _mouseOver\ parent gnomadStructuralVariants on\ searchIndex name\ shortLabel gnomAD All SV's\ showCfg on\ track gnomadSvFull\ type bigBed 9 +\ url https://gnomad.broadinstitute.org/variant/$$?dataset=gnomad_sv_r2_1\ urlLabel gnomAD Structural Variant Browser\ visibility dense\ pliByGene gnomAD Gene LoF Constraint bigBed 12 + gnomAD Predicted Loss of Function Constraint Metrics By Gene (pLI) v2.1.1 3 1 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/gene/$$?dataset=gnomad_r2_1 varRep 1 bigDataUrl /gbdb/hg19/gnomAD/pLI/pliByGene.bb\ defaultLabelFields geneName\ filter._pli 0:1\ filterByRange._pli on\ filterLabel._pli Show only items between this pLI range\ itemRgb on\ labelFields name,geneName\ longLabel gnomAD Predicted Loss of Function Constraint Metrics By Gene (pLI) v2.1.1\ mouseOverField _mouseOver\ parent gnomadPLI on\ priority 1\ searchIndex name,geneName\ shortLabel gnomAD Gene LoF Constraint\ track pliByGene\ type bigBed 12 +\ url https://gnomad.broadinstitute.org/gene/$$?dataset=gnomad_r2_1\ urlLabel View this Gene on the gnomAD browser\ gtexGeneV8 GTEx Gene V8 bed 6 + Gene Expression in 54 tissues from GTEx RNA-seq of 17382 samples, 948 donors (V8, Aug 2019) 3 1 0 0 0 127 127 127 1 0 0

Description

\

\ The\ \ NIH Genotype-Tissue Expression (GTEx) project\ was created to establish a sample and data resource for studies on the relationship between \ genetic variation and gene expression in multiple human tissues. \ This track shows median gene expression levels in 52 tissues and 2 cell lines, \ based on RNA-seq data from the GTEx final data release (V8, August 2019).\ This release is based on data from 17,382 tissue samples obtained from 948 adult \ post-mortem individuals.

\ \

Display Conventions

\

\ In Full and Pack display modes, expression for each gene is represented by a colored bargraph,\ where the height of each bar represents the median expression level across all samples for a \ tissue, and the bar color indicates the tissue.\ Tissue colors were assigned to conform to the GTEx Consortium publication conventions.\
     
\ The bargraph display has the same width and tissue order for all genes.\ Mouse hover over a bar will show the tissue and median expression level.\ The Squish display mode draws a rectangle for each gene, colored to indicate the tissue\ with highest expression level if it contributes more than 10% to the overall expression\ (and colored black if no tissue predominates).\ In Dense mode, the darkness of the grayscale rectangle displayed for the gene reflects the total\ median expression level across all tissues.

\

\ The GTEx transcript model used to quantify expression level is displayed below the graph,\ colored to indicate the transcript class \ (coding, \ noncoding, \ pseudogene, \ problem), \ following GENCODE conventions.\

\

\ Click-through on a graph displays a boxplot of expression level quartiles with outliers, \ per tissue, along with a link to the corresponding gene page on the GTEx Portal.

\ The track configuration page provides controls to limit the genes and tissues displayed,\ and to select raw or log transformed expression level display.

\ \

Methods

\ Tissue samples were obtained using the GTEx standard operating procedures for informed consent\ and tissue collection, in conjunction with the \ \ National Cancer Institute Biorepositories and Biospecimen.\ All tissue specimens were reviewed by pathologists to characterize and\ verify organ source.\ Images from stained tissue samples can be viewed via the \ \ NCI histopathology viewer.\ The Qiagen PAXgene non-formalin tissue preservation product was used to stabilize \ tissue specimens without cross-linking biomolecules.

\

\ RNA-seq was performed by the GTEx Laboratory, Data Analysis and Coordinating Center \ (LDACC) at the Broad Institute.\ The Illumina TruSeq protocol was used to create an unstranded polyA+ library sequenced\ on the Illumina HiSeq 2000 and HiSeq 2500 platforms to produce 76-bp paired end reads with a coverage\ goal of 50M (median achieved was ~82M total reads).\

\ Sequence reads were aligned to the hg38/GRCh38 human genome using STAR v2.5.3a\ assisted by the GENCODE 26 transcriptome definition. \ The alignment pipeline is available\ here.\

\

\ Gene annotations were produced using a custom isoform collapsing procedure that excluded\ retained intron and read through transcripts, merged overlapping exon intervals and then excluded\ exon intervals overlapping between genes.\ Gene expression levels in TPM were called via the RNA-SeQC tool (v1.1.9), after filtering for \ unique mapping, proper pairing, and exon overlap.\ For further method details, see the \ \ GTEx Portal Documentation page.

\

\ UCSC obtained the gene-level expression files, gene annotations and sample metadata from the \ GTEx Portal Download page.\ Median expression level in TPM was computed per gene/per tissue.

\ \

Subject and Sample Characteristics

\

\ The scientific goal of the GTEx project required that the donors and their biospecimen \ present with no evidence of disease. \ The tissue types collected were chosen based on their clinical significance, logistical \ feasibility and their relevance to the scientific goal of the project and the \ research community. \ Summary plots of GTEx sample characteristics are available at the \ \ GTEx Portal Tissue Summary page.

\ \ \

Data Access

\

\ The raw data for the GTEx Gene expression track can be accessed interactively through the \ \ Table Browser or Data Integrator. Metadata can be \ found in the connected tables below.\

\

\ For automated analysis and downloads, the track data files can be downloaded from \ our downloads server\ or the JSON API.\ Individual regions or the whole genome annotation can be accessed as text using our utility\ bigBedToBed. Instructions for downloading the utility can be found \ here. \ That utility can also be used to obtain features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/gtex/gtexGeneV8.bb -chrom=chr21\ -start=0 -end=100000000 stdout

\

\ Data can also be obtained directly from GTEx at the following link:\ \ https://gtexportal.org/home/datasets

\ \

Credits

\

\ Statistical analysis and data interpretation was performed by The GTEx Consortium Analysis \ Working Group. \ Data was provided by the GTEx LDACC at The Broad Institute of MIT and Harvard.

\ \

References

\

\ GTEx Consortium. \ \ The GTEx Consortium atlas of genetic regulatory effects across human tissues.\ Science. 2020 Sep 11;369(6509):1318-1330.\ PMID: 32913098; \ PMC: PMC7737656

\

\ \

\ GTEx Consortium.\ \ The Genotype-Tissue Expression (GTEx) project.\ Nat Genet. 2013 Jun;45(6):580-5.\ PMID: 23715323; \ PMC: PMC4010069

\ \

\ Carithers LJ, Ardlie K, Barcus M, Branton PA, Britton A, Buia SA, Compton CC, DeLuca DS, \ Peter-Demchok J, Gelfand ET et al.\ \ A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project.\ Biopreserv Biobank. 2015 Oct;13(5):311-9.\ PMID: 26484571; \ PMC: PMC4675181

\ \ Melé M, Ferreira PG, Reverter F, DeLuca DS, Monlong J, Sammeth M, Young TR, Goldmann JM,\ Pervouchine DD, Sullivan TJ et al.\ \ Human genomics. The human transcriptome across tissues and individuals.\ Science. 2015 May 8;348(6235):660-5.\ PMID: 25954002; PMC: PMC4547472

\ \

\ DeLuca DS, Levin JZ, Sivachenko A, Fennell T, Nazaire MD, Williams C, Reich M, Winckler W, Getz G.\ \ RNA-SeQC: RNA-seq metrics for quality control and process optimization.\ Bioinformatics. 2012 Jun 1;28(11):1530-2.\ PMID: 22539670; PMC: PMC3356847

\ \ expression 1 group expression\ longLabel Gene Expression in 54 tissues from GTEx RNA-seq of 17382 samples, 948 donors (V8, Aug 2019)\ maxItems 200\ priority 1\ shortLabel GTEx Gene V8\ spectrum on\ track gtexGeneV8\ type bed 6 +\ visibility pack\ hinv70Coding H-Inv genes bed 12 H-Inv v7.0 Gene Predictions 0 1 0 50 225 127 152 240 0 0 0 http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$$ genes 1 color 0,50,225\ longLabel H-Inv v7.0 Gene Predictions\ parent hinv70Composite\ priority 1\ shortLabel H-Inv genes\ track hinv70Coding\ wgEncodeFsuRepliChipH1hescWaveSignalRep1 H1-hESC 1 bigWig -1.765402 1.942196 H1-hESC Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU 0 1 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU\ parent wgEncodeFsuRepliChip\ shortLabel H1-hESC 1\ subGroups view=WaveSignal cellType=t1H1HESC rep=rep1\ track wgEncodeFsuRepliChipH1hescWaveSignalRep1\ type bigWig -1.765402 1.942196\ ucsfChipSeqH3K4me3BrainCoverage H3K4me3 RawSignal bigWig 1 180 H3K4me3 ChIP-seq Raw Signal 2 1 0 200 0 200 100 0 0 0 0 regulation 0 altColor 200,100,0\ autoScale on\ color 0,200,0\ configurable on\ longLabel H3K4me3 ChIP-seq Raw Signal\ maxHeightPixels 128:32:16\ noInherit on\ parent ucsfBrainMethylViewCOV\ priority 5\ shortLabel H3K4me3 RawSignal\ subGroups view=COV sampleType=Brain assayType=H3K4me3\ track ucsfChipSeqH3K4me3BrainCoverage\ type bigWig 1 180\ yLineOnOff on\ hapmapSnpsASW HapMap SNPs ASW bed 6 + HapMap SNPs from the ASW Population (African Ancestry in SouthWestern United States) 0 1 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HapMap SNPs from the ASW Population (African Ancestry in SouthWestern United States)\ parent hapmapSnps\ priority 1\ shortLabel HapMap SNPs ASW\ track hapmapSnpsASW\ wgEncodeSunySwitchgearHt1080Elavl1RbpAssocRna HT-1080 ELAVL1 broadPeak HT-1080 ELAV1 RBP Associated RNA by Switchgear from ENCODE/SUNY 0 1 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HT-1080 ELAV1 RBP Associated RNA by Switchgear from ENCODE/SUNY\ parent wgEncodeSunySwitchgear on\ shortLabel HT-1080 ELAVL1\ subGroups factor=ELAVL1 cellType=HT1080\ track wgEncodeSunySwitchgearHt1080Elavl1RbpAssocRna\ type broadPeak\ phastBiasTracts3 human tracts bed 3 . phastBias gBGC human tracts 1 1 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel phastBias gBGC human tracts\ parent phastBiasTracts\ priority 1\ shortLabel human tracts\ subGroups view=TRACTS\ track phastBiasTracts3\ visibility dense\ platinumHybrid hybrid vcfTabix Platinum genome hybrid 3 1 0 0 0 127 127 127 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 1 bigDataUrl /gbdb/hg19/platinumGenomes/hg19.hybrid.vcf.gz\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX\ configureByPopup off\ group varRep\ longLabel Platinum genome hybrid\ maxWindowToDraw 200000\ parent platinumGenomes\ shortLabel hybrid\ showHardyWeinberg on\ track platinumHybrid\ type vcfTabix\ vcfDoFilter off\ vcfDoMaf off\ visibility pack\ pubsBlatPsl Indiv. Seq. Matches psl Individual Sequence Matches of One Selected Article from Sequences Track 0 1 0 115 70 127 185 162 0 0 0 phenDis 1 color 0,115,70\ configurable off\ configureByPopup off\ longLabel Individual Sequence Matches of One Selected Article from Sequences Track\ parent pubs off\ priority 1\ shortLabel Indiv. Seq. Matches\ track pubsBlatPsl\ type psl\ visibility hide\ jarvis JARVIS bigWig JARVIS: score to prioritize non-coding regions for disease relevance 1 1 150 130 160 202 192 207 0 0 0

Description

\ \

\ The "Constraint scores" container track includes several subtracks showing the results of\ constraint prediction algorithms. These try to find regions of negative\ selection, where variations likely have functional impact. The algorithms do\ not use multi-species alignments to derive evolutionary constraint, but use\ primarily human variation, usually from variants collected by gnomAD (see the\ gnomAD V2 or V3 tracks on hg19 and hg38) or TOPMED (contained in our dbSNP\ tracks and available as a filter). One of the subtracks is based on UK Biobank\ variants, which are not available publicly, so we have no track with the raw data.\ The number of human genomes that are used as the input for these scores are\ 76k, 53k and 110k for gnomAD, TOPMED and UK Biobank, respectively.\

\ \

Note that another important constraint score, gnomAD\ constraint, is not part of this container track but can be found in the hg38 gnomAD\ track.\

\ \ The algorithms included in this track are:\
    \
  1. \ JARVIS - "Junk" Annotation genome-wide Residual Variation Intolerance Score: \ JARVIS scores were created by first scanning the entire genome with a\ sliding-window approach (using a 1-nucleotide step), recording the number of\ all TOPMED variants and common variants, irrespective of their predicted effect,\ within each window, to eventually calculate a single-nucleotide resolution\ genome-wide residual variation intolerance score (gwRVIS). That score, gwRVIS\ was then combined with primary genomic sequence context, and additional genomic\ annotations with a multi-module deep learning framework to infer\ pathogenicity of noncoding regions that still remains naive to existing\ phylogenetic conservation metrics. The higher the score, the more deleterious\ the prediction. This score covers the entire genome, except the gaps.\ \
  2. \ HMC - Homologous Missense Constraint:\ Homologous Missense Constraint (HMC) is a amino acid level measure\ of genetic intolerance of missense variants within human populations.\ For all assessable amino-acid positions in Pfam domains, the number of\ missense substitutions directly observed in gnomAD (Observed) was counted\ and compared to the expected value under a neutral evolution\ model (Expected). The upper limit of a 95% confidence interval for the\ Observed/Expected ratio is defined as the HMC score. Missense variants\ disrupting the amino-acid positions with HMC<0.8 are predicted to be\ likely deleterious. This score only covers PFAM domains within coding regions.\ \
  3. \ MetaDome - Tolerance Landscape Score (hg19 only):\ MetaDome Tolerance Landscape scores are computed as a missense over synonymous \ variant count ratio, which is calculated in a sliding window (with a size of 21 \ codons/residues) to provide \ a per-position indication of regional tolerance to missense variation. The \ variant database was gnomAD and the score corrected for codon composition. Scores \ <0.7 are considered intolerant. This score covers only coding regions.\ \
  4. \ MTR - Missense Tolerance Ratio (hg19 only):\ Missense Tolerance Ratio (MTR) scores aim to quantify the amount of purifying \ selection acting specifically on missense variants in a given window of \ protein-coding sequence. It is estimated across sliding windows of 31 codons \ (default) and uses observed standing variation data from the WES component of \ gnomAD / the Exome Aggregation Consortium Database (ExAC), version 2.0. Scores\ were computed using Ensembl v95 release. The number of gnomAD 2 exomes used here\ is higher than the number of gnomAD 3 samples (125 exoms versus 76k full genomes), \ but this score only covers coding regions.\ \
  5. \ UK Biobank depletion rank score (hg38 only):\ Halldorsson et al. tabulated the number of UK Biobank variants in each\ 500bp window of the genome and compared this number to an expected number\ given the heptamer nucleotide composition of the window and the fraction of\ heptamers with a sequence variant across the genome and their mutational\ classes. A variant depletion score was computed for every overlapping set\ of 500-bp windows in the genome with a 50-bp step size. They then assigned\ a rank (depletion rank (DR)) from 0 (most depletion) to 100 (least\ depletion) for each 500-bp window. Since the windows are overlapping, we\ plot the value only in the central 50bp of the 500bp window, following\ advice from the author of the score,\ Hakon Jonsson, deCODE Genetics. He suggested that the value of the central\ window, rather than the worst possible score of all overlapping windows, is\ the most informative for a position. This score covers almost the entire genome,\ only very few regions were excluded, where the genome sequence had too many gap characters.
\ \

Display Conventions and Configuration

\ \

JARVIS

\

\ JARVIS scores are shown as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The scores were downloaded and converted to a single bigWig file.\ Move the mouse over the bars to display the exact values. A horizontal line is shown at the 0.733\ value which signifies the 90th percentile.

\ See hg19 makeDoc and\ hg38 makeDoc.

\

\ Interpretation: The authors offer a suggested guideline of > 0.9998 for identifying\ higher confidence calls and minimizing false positives. In addition to that strict threshold, the \ following two more relaxed cutoffs can be used to explore additional hits. Note that these\ thresholds are offered as guidelines and are not necessarily representative of pathogenicity.

\ \

\ \ \ \ \ \ \ \ \ \
PercentileJARVIS score threshold
99th0.9998
95th0.9826
90th0.7338
\

\ \

HMC

\

\ HMC scores are displayed as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The highly-constrained cutoff\ of 0.8 is indicated with a line.

\

\ Interpretation: \ A protein residue with HMC score <1 indicates that missense variants affecting\ the homologous residues are significantly under negative selection (P-value <\ 0.05) and likely to be deleterious. A more stringent score threshold of HMC<0.8\ is recommended to prioritize predicted disease-associated variants.\

\ \

MetaDome

\

\ MetaDome data can be found on two tracks, MetaDome and MetaDome All Data.\ The MetaDome track should be used by default for data exploration. In this track\ the raw data containing the MetaDome tolerance scores were converted into a signal ("wiggle")\ track. Since this data was computed on the proteome, there was a small amount of coordinate\ overlap, roughly 0.42%. In these regions the lowest possible score was chosen for display\ in the track to maintain sensitivity. For this reason, if a protein variant is being evaluated,\ the MetaDome All Data track can be used to validate the score. More information\ on this data can be found in the MetaDome FAQ.

\

\ Interpretation: The authors suggest the following guidelines for evaluating\ intolerance. By default, the MetaDome track displays a horizontal line at 0.7 which \ signifies the first intolerant bin. For more information see the MetaDome publication.

\ \

\ \ \ \ \ \ \ \ \ \
ClassificationMetaDome Tolerance Score
Highly intolerant≤ 0.175
Intolerant≤ 0.525
Slightly intolerant≤ 0.7
\

\ \

MTR

\

\ MTR data can be found on two tracks, MTR All data and MTR Scores. In the\ MTR Scores track the data has been converted into 4 separate signal tracks\ representing each base pair mutation, with the lowest possible score shown when\ multiple transcripts overlap at a position. Overlaps can happen since this score\ is derived from transcripts and multiple transcripts can overlap. \ A horizontal line is drawn on the 0.8 score line\ to roughly represent the 25th percentile, meaning the items below may be of particular\ interest. It is recommended that the data be explored using\ this version of the track, as it condenses the information substantially while\ retaining the magnitude of the data.

\ \

Any specific point mutations of interest can then be researched in the \ MTR All data track. This track contains all of the information from\ \ MTRV2 including more than 3 possible scores per base when transcripts overlap.\ A mouse-over on this track shows the ref and alt allele, as well as the MTR score\ and the MTR score percentile. Filters are available for MTR score, False Discovery Rate\ (FDR), MTR percentile, and variant consequence. By default, only items in the bottom\ 25 percentile are shown. Items in the track are colored according\ to their MTR percentile:

\ \

\ Interpretation: Regions with low MTR scores were seen to be enriched with\ pathogenic variants. For example, ClinVar pathogenic variants were seen to\ have an average score of 0.77 whereas ClinVar benign variants had an average score\ of 0.92. Further validation using the FATHMM cancer-associated training dataset saw\ that scores less than 0.5 contained 8.6% of the pathogenic variants while only containing\ 0.9% of neutral variants. In summary, lower scores are more likely to represent\ pathogenic variants whereas higher scores could be pathogenic, but have a higher chance\ to be a false positive. For more information see the MTR-Viewer publication.

\ \

Methods

\ \

JARVIS

\

\ Scores were downloaded and converted to a single bigWig file. See the\ hg19 makeDoc and the\ hg38 makeDoc for more info.\

\ \

HMC

\

\ Scores were downloaded and converted to .bedGraph files with a custom Python \ script. The bedGraph files were then converted to bigWig files, as documented in our \ makeDoc hg19 build log.

\ \

MetaDome

\

\ The authors provided a bed file containing codon coordinates along with the scores. \ This file was parsed with a python script to create the two tracks. For the first track\ the scores were aggregated for each coordinate, then the lowest score chosen for any\ overlaps and the result written out to bedGraph format. The file was then converted\ to bigWig with the bedGraphToBigWig utility. For the second track the file\ was reorganized into a bed 4+3 and conveted to bigBed with the bedToBigBed\ utility.

\

\ See the hg19 makeDoc for details including the build script.

\

\ The raw MetaDome data can also be accessed via their Zenodo handle.

\ \

MTR

\

\ V2\ file was downloaded and columns were reshuffled as well as itemRgb added for the\ MTR All data track. For the MTR Scores track the file was parsed with a python\ script to pull out the highest possible MTR score for each of the 3 possible mutations\ at each base pair and 4 tracks built out of these values representing each mutation.

\

\ See the hg19 makeDoc entry on MTR for more info.

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

\ \

\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

\ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/hmc/hmc.bw stdout\
\

\ \

\ Please refer to our\ Data Access FAQ\ for more information.\

\ \ \

Credits

\ \

\ Thanks to Jean-Madeleine Desainteagathe (APHP Paris, France) for suggesting the JARVIS, MTR, HMC tracks. Thanks to Xialei Zhang for providing the HMC data file and to Dimitrios Vitsios and Slave Petrovski for helping clean up the hg38 JARVIS files for providing guidance on interpretation. Additional\ thanks to Laurens van de Wiel for providing the MetaDome data as well as guidance on the track development and interpretation. \

\ \

References

\ \

\ Vitsios D, Dhindsa RS, Middleton L, Gussow AB, Petrovski S.\ \ Prioritizing non-coding regions based on human genomic constraint and sequence context with deep\ learning.\ Nat Commun. 2021 Mar 8;12(1):1504.\ PMID: 33686085; PMC: PMC7940646\

\ \

\ Xiaolei Zhang, Pantazis I. Theotokis, Nicholas Li, the SHaRe Investigators, Caroline F. Wright, Kaitlin E. Samocha, Nicola Whiffin, James S. Ware\ \ Genetic constraint at single amino acid resolution improves missense variant prioritisation and gene discovery.\ Medrxiv 2022.02.16.22271023\

\ \

\ Wiel L, Baakman C, Gilissen D, Veltman JA, Vriend G, Gilissen C.\ \ MetaDome: Pathogenicity analysis of genetic variants through aggregation of homologous human protein\ domains.\ Hum Mutat. 2019 Aug;40(8):1030-1038.\ PMID: 31116477; PMC: PMC6772141\

\ \

\ Silk M, Petrovski S, Ascher DB.\ \ MTR-Viewer: identifying regions within genes under purifying selection.\ Nucleic Acids Res. 2019 Jul 2;47(W1):W121-W126.\ PMID: 31170280; PMC: PMC6602522\

\ \

\ Halldorsson BV, Eggertsson HP, Moore KHS, Hauswedell H, Eiriksson O, Ulfarsson MO, Palsson G,\ Hardarson MT, Oddsson A, Jensson BO et al.\ \ The sequences of 150,119 genomes in the UK Biobank.\ Nature. 2022 Jul;607(7920):732-740.\ PMID: 35859178; PMC: PMC9329122\

\ \ phenDis 0 bigDataUrl /gbdb/hg19/jarvis/jarvis.bw\ color 150,130,160\ group phenDis\ html constraintSuper\ longLabel JARVIS: score to prioritize non-coding regions for disease relevance\ maxHeightPixels 8:40:128\ maxWindowToDraw 10000000\ mouseOverFunction noAverage\ parent constraintSuper\ priority 1\ shortLabel JARVIS\ track jarvis\ type bigWig\ viewLimits 0.0:1.0\ visibility dense\ yLineMark 0.73\ yLineOnOff on\ jaspar2024 JASPAR 2024 TFBS bigBed 6 + JASPAR CORE 2024 - Predicted Transcription Factor Binding Sites 3 1 0 0 0 127 127 127 1 0 0 http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all regulation 1 bigDataUrl /gbdb/hg19/jaspar/JASPAR2024.bb\ filter.score 400\ filterByRange.score 0:1000\ filterValues.TFName 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IC4,ZIC5,ZIM3,ZKSCAN1,ZKSCAN3,ZKSCAN5,ZNF135,ZNF136,ZNF140,ZNF143,ZNF148,ZNF157,ZNF16,ZNF175,ZNF184,ZNF189,ZNF211,ZNF213,ZNF214,ZNF24,ZNF257,ZNF263,ZNF274,ZNF281,ZNF282,ZNF317,ZNF320,ZNF324,ZNF331,ZNF341,ZNF343,ZNF35,ZNF354A,ZNF354C,ZNF382,ZNF384,ZNF410,ZNF416,ZNF417,ZNF418,Znf423,ZNF449,ZNF454,ZNF460,ZNF524,ZNF528,ZNF530,ZNF547,ZNF549,ZNF558,ZNF574,ZNF582,ZNF610,ZNF652,ZNF667,ZNF669,ZNF675,ZNF677,ZNF680,ZNF682,ZNF684,ZNF692,ZNF701,ZNF707,ZNF708,ZNF740,ZNF75A,ZNF75D,ZNF76,ZNF766,ZNF768,ZNF770,ZNF784,ZNF8,ZNF816,ZNF85,ZNF93,ZSCAN16,ZSCAN21,ZSCAN29,ZSCAN31,ZSCAN4\ labelFields TFName\ longLabel JASPAR CORE 2024 - Predicted Transcription Factor Binding Sites\ maxItems 100000\ motifPwmTable hgFixed.jasparCore2024\ parent jaspar on\ pennantIcon New red ../goldenPath/newsarch.html#030524 "New Mar. 5, 2024"\ priority 1\ shortLabel JASPAR 2024 TFBS\ track jaspar2024\ type bigBed 6 +\ visibility pack\ wgEncodeGisChiaPetK562CtcfInteractionsRep1 K562 CTCF Int 1 bed 12 K562 CTCF ChIA-PET Interactions Rep 1 from ENCODE/GIS-Ruan 2 1 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 CTCF ChIA-PET Interactions Rep 1 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetInteractions on\ shortLabel K562 CTCF Int 1\ subGroups view=Interactions factor=CTCF cellType=t1K562 rep=rep1\ track wgEncodeGisChiaPetK562CtcfInteractionsRep1\ type bed 12\ wgEncodeUchicagoTfbsK562EfosControlPk K562 FOS/GFP Pk narrowPeak K562 FOS GFP-tag TFBS Peaks from ENCODE/UChicago 3 1 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 FOS GFP-tag TFBS Peaks from ENCODE/UChicago\ parent wgEncodeUchicagoTfbsPeaks\ shortLabel K562 FOS/GFP Pk\ subGroups view=Peaks factor=FOS cellType=K562 control=ControlFOS rep=repPOOLED\ track wgEncodeUchicagoTfbsK562EfosControlPk\ type narrowPeak\ wgEncodeSydhHistoneK562H3k4me1UcdPk K562 H3K4me1 narrowPeak K562 H3K4me1 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 1 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K4me1 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks on\ shortLabel K562 H3K4me1\ subGroups view=Peaks factor=H3K04ME1 cellType=aK562 control=UCD treatment=NONE\ track wgEncodeSydhHistoneK562H3k4me1UcdPk\ type narrowPeak\ wgEncodeUwDgfK562Hotspots K562 Hot broadPeak K562 DNaseI DGF Hotspots from ENCODE/UW 0 1 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots on\ shortLabel K562 Hot\ subGroups view=Hotspots cellType=t1K562 treatment=aNONE rep=rep1\ track wgEncodeUwDgfK562Hotspots\ type broadPeak\ wgEncodeSydhRnaSeqK562Ifna30PolyaAln K562 pA+ Na30 bam K562 polyA+ IFNa30 RNA-seq Alignments from ENCODE/SYDH 0 1 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 polyA+ IFNa30 RNA-seq Alignments from ENCODE/SYDH\ parent wgEncodeSydhRnaSeqViewAlignments off\ shortLabel K562 pA+ Na30\ subGroups view=Alignments cellType=t1K562 rnaExtract=polyA treatment=IFNa30\ track wgEncodeSydhRnaSeqK562Ifna30PolyaAln\ type bam\ pgKb1Comb KB1 pgSnp KB1 Genome Variants, combination of 454, Illumina, and genotyping 3 1 0 0 0 127 127 127 0 0 0 varRep 1 longLabel KB1 Genome Variants, combination of 454, Illumina, and genotyping\ origAssembly hg18\ parent pgSnpPSU\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel KB1\ subGroups view=A_PSU id=AA_KB1 type=SNP\ track pgKb1Comb\ lovdShort LOVD Variants < 50 bp + ins bigBed 4 + LOVD: Leiden Open Variation Database, short < 50 bp variants and insertions of any length 0 1 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg19/lovd/lovd.hg19.short.bb\ group phenDis\ longLabel LOVD: Leiden Open Variation Database, short < 50 bp variants and insertions of any length\ noScoreFilter on\ parent lovdComp\ shortLabel LOVD Variants < 50 bp + ins\ track lovdShort\ urls id="https://varcache.lovd.nl/redirect/$$"\ visibility hide\ MaxCounts_Fwd Max counts of CAGE reads (fwd) bigWig Max counts of CAGE reads forward 2 1 255 0 0 255 127 127 0 0 0 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ctssMaxCounts.fwd.bw\ color 255,0,0\ dataVersion FANTOM5 phase2.5\ longLabel Max counts of CAGE reads forward\ parent Max_counts_multiwig\ shortLabel Max counts of CAGE reads (fwd)\ subGroups category=max strand=forward\ track MaxCounts_Fwd\ type bigWig\ maxAFmutA MaxAF Mutation: A bigWig -1.29334 0.75731 BayesDel v1 Score (MaxAF): Mutation is A 2 1 140 202 203 197 228 229 0 0 0

Description

\ \

\ The "Prediction Scores" container track includes subtracks showing the results of prediction\ scores.

\ \

BayesDel

\

BayesDel is a deleteriousness meta-score for coding and non-coding variants, single nucleotide\ variants, and small insertion/deletions. The range of the score is from -1.29334 to 0.75731.\ The higher the score, the more likely the variant is pathogenic.

\ \

\ For gene discovery research, a universal cutoff value (0.0692655 with MaxAF, -0.0570105 without\ MaxAF) was obtained by maximizing sensitivity and specificity in classifying ClinVar variants;\ Version 1 (build date 2017-08-24).

\

\ For clinical variant classification, Bayesdel thresholds have been calculated for a variant to\ reach various levels of evidence; please refer to Pejaver et al. 2022 for general application\ of these scores in clinical applications.\

\ \

Display Conventions and Configuration

\ \

BayesDel

\

There are eight subtracks for the BayesDel track: four include pre-computed MaxAF-integrated BayesDel\ scores for missense variants, one for each base. The other four are of the same format, but scores\ are not MaxAF-integrated.

\ \

For SNVs, at each genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing the reference allele,\ (e.g. A to A) is always set to zero.

\ \

Note: There are cases in which a genomic position will have one value missing.\

\ \

When using this track, zoom in until you can see every base pair at the top of the display.\ Otherwise, there are several nucleotides per pixel under your mouse cursor and instead of an actual\ score, the tooltip text will show the average score of all nucleotides under the cursor. This is\ indicated by the prefix "~" in the mouseover.\

\ \

Data Access

\

BayesDel scores are available at the\ BayesDel website.\ \

Methods

\

BayesDel data was converted from the files provided on the\ BayesDel_170824 Database.\ The number 170824 is the date (2017-08-24) the scores were created. Both sets of BayesDel scores are\ available in this database, one integrated MaxAF (named BayesDel_170824_addAF) and one without\ (named BayesDel_170824_noAF). Data conversion was performed using\ \ custom Python scripts.\

\ \

Credits

\

Thanks to the BayesDel team for providing precomputed data, and to Tiana Pereira, Christopher\ Lee, Gerardo Perez, and Anna Benet-Pages of the Genome Browser team.

\ \

References

\

\ Feng BJ.\ \ PERCH: A Unified Framework for Disease Gene Prioritization.\ Hum Mutat. 2017 Mar;38(3):243-251.\ PMID: 27995669; PMC: PMC5299048\

\ \

\ Pejaver V, Byrne AB, Feng BJ, Pagel KA, Mooney SD, Karchin R, O'Donnell-Luria A, Harrison SM,\ Tavtigian SV, Greenblatt MS et al.\ \ Calibration of computational tools for missense variant pathogenicity classification and ClinGen\ recommendations for PP3/BP4 criteria.\ Am J Hum Genet. 2022 Dec 1;109(12):2163-2177.\ PMID: 36413997; PMC: PMC9748256\

\ \

\ Tian Y, Pesaran T, Chamberlin A, Fenwick RB, Li S, Gau CL, Chao EC, Lu HM, Black MH, Qian D.\ \ REVEL and BayesDel outperform other in silico meta-predictors for clinical variant\ classification.\ Sci Rep. 2019 Sep 4;9(1):12752.\ PMID: 31484976; PMC: PMC6726608\

\ phenDis 0 bigDataUrl /gbdb/hg19/bayesDel/MaxAFBayesDelMutA.bw\ color 140, 202, 203\ html predictionScoresSuper\ longLabel BayesDel v1 Score (MaxAF): Mutation is A\ maxHeightPixels 128:20:8\ parent bayesDel on\ shortLabel MaxAF Mutation: A\ track maxAFmutA\ type bigWig -1.29334 0.75731\ visibility full\ windowingFunction mean+whiskers\ gnomADPextmean_proportion Mean Proportion bigWig 0 1 gnomAD pext Mean Proportion 2 1 66 139 202 160 197 228 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/mean_proportion.bw\ color 66,139,202\ longLabel gnomAD pext Mean Proportion\ parent gnomadPext on\ priority 1\ shortLabel Mean Proportion\ track gnomADPextmean_proportion\ visibility full\ jaxQtlAsIs MGI Mouse QTL bed 4 . MGI Mouse QTLs Coarsely Mapped to Human 0 1 200 100 0 227 177 127 0 0 0 http://www.informatics.jax.org/marker/$$ phenDis 1 color 200,100,0\ longLabel MGI Mouse QTLs Coarsely Mapped to Human\ parent jaxQtlMapped\ priority 1\ shortLabel MGI Mouse QTL\ track jaxQtlAsIs\ cons100wayViewalign Multiz Alignments bed 4 Vertebrate Multiz Alignment & Conservation (100 Species) 3 1 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Vertebrate Multiz Alignment & Conservation (100 Species)\ parent cons100way\ shortLabel Multiz Alignments\ track cons100wayViewalign\ view align\ viewUi on\ visibility pack\ mtrA Mutation: A bigWig MTR Score: Mutation is A 2 1 124 39 175 189 147 215 0 0 0 phenDis 0 bigDataUrl /gbdb/hg19/mtr/a.bw\ longLabel MTR Score: Mutation is A\ maxHeightPixels 128:40:8\ parent mtrScores on\ shortLabel Mutation: A\ track mtrA\ type bigWig\ visibility full\ revelA Mutation: A bigWig REVEL: Mutation is A 1 1 150 80 200 202 167 227 0 0 0 phenDis 0 bigDataUrl /gbdb/hg19/revel/a.bw\ longLabel REVEL: Mutation is A\ maxHeightPixels 128:20:8\ maxWindowToDraw 10000000\ maxWindowToQuery 500000\ mouseOverFunction noAverage\ parent revel on\ shortLabel Mutation: A\ track revelA\ type bigWig\ viewLimits 0:1.0\ viewLimitsMax 0:1.0\ visibility dense\ caddA Mutation: A bigWig CADD 1.6 Score: Mutation is A 1 1 100 130 160 177 192 207 0 0 0 phenDis 0 bigDataUrl /gbdb/hg19/cadd/a.bw\ longLabel CADD 1.6 Score: Mutation is A\ maxHeightPixels 128:20:8\ parent cadd on\ shortLabel Mutation: A\ track caddA\ type bigWig\ viewLimits 10:50\ viewLimitsMax 0:100\ visibility dense\ patNonBulk Non-bulk patents bigBed 12 + Patent Lens Non-bulk patents 1 1 0 0 0 127 127 127 0 0 0 https://www.lens.org/lens/bio/patseqanalyzer#psa/homo_sapiens/latest/chromosome/$s/${-$}?appInClaims=1 phenDis 1 longLabel Patent Lens Non-bulk patents\ parent patSeq\ priority 1\ shortLabel Non-bulk patents\ track patNonBulk\ type bigBed 12 +\ visibility dense\ numtS NumtS bed 6 . Human NumtS 0 1 0 60 120 127 157 187 1 0 0

Description and display conventions

\

\ NumtS (Nuclear mitochondrial sequences) are mitochondrial fragments inserted in nuclear genomic sequences. The most credited hypothesis concerning their generation suggests that in presence of mutagenic agents or under stress conditions fragments of mtDNA escape from mitochondria, reach the nucleus and insert into chromosomes during break repair, although NumtS can derive from duplication of genomic fragments. NumtS may be cause of contamination during human mtDNA sequencing and hence frequent false low heteroplasmic evidences have been reported.\ The Bioinformatics group chaired by M.Attimonelli (Bari, Italy) has produced the RHNumtS compilation annotating more than 500 Human NumtS. To allow the scientific community to access to the compilation and to perform genomics comparative analyses inclusive of the NumtS data, the group has designed the Human NumtS tracks below described.\

\ \

\ The NumtS tracks show the High Score Pairs (HSPs) obtained by aligning the mitochondrial reference genome (NC_012920) with the hg18 release of the human genome.\

\
    \
  1. "NumtS (Nuclear mitochondrial Sequences)" Track\

    \ The "NumtS mitochondrial sequences" track shows the mapping of the HSPs returned by BlastN on the nuclear genome. The shading of the items reflects the similarity returned by BlastN, and the direction of the arrows is concordant with the strand of the alignment. For every item, a link pointing to the mitochondrial mapping is provided, thus allowing a fast cross among the NumtS genomic contexts.\

    \
    2. \ \
  2. "NumtS assembled" Track\

    \ The "NumtS assembled" track shows items obtained by assembling HSPs annotated in the "NumtS" track fulfilling the following conditions:\

      \
    • the orientation of their alignments must be concordant.
      • \
    • the distance between them must be less than 2 kb, on the mitochondrial genome as well as on the nuclear genome.
      • \

    \

    \ Exceptions for the second condition arise when a long repetitive element is present between two HSPs.\

    \
    3. \ \
  3. "NumtS on mitochondrion" Track\

    \ The "NumtS on mitochondrion" track shows the mapping of the HSPs on the mitochondrial genome. The shading of the items reflects the similarity returned by BlastN, and the direction of the arrows is concordant with the strand of the alignment. For every item, a link pointing to the nuclear mapping is provided.\

    \ \
  4. "NumtS on mitochondrion with chromosome placement" Track\

    \ The "NumtS on mitochondrion with chromosome placement" shows the mapping of the HSPs on the mitochondrial genome, but the items are coloured according to the colours assigned to each human chromosome on the UCSC genome browser. No shading is here provided. For every item, a link pointing to the nuclear mapping is provided.\

    \
\ \

Methods

\

\ NumtS mappings were obtained by running Blast2seq (program: BlastN) between each chromosome of of the Human Genome hg18 build and the human mitochondrial reference sequence (rCRS, AC: NC_012920), fixing the e-value threshold to 1e-03. The assembling of the HSPs was performed with spreadsheet interpolation and manual inspection.\

\ \

Verification

\

\ NumtS predicted in silico were validated by carrying out PCR amplification and sequencing on blood-extracted DNA of a healthy individual of European origin. PCR amplification was successful for 275 NumtS and provided amplicons of the expected length. All PCR fragments were sequenced on both strands, and submitted to the EMBL databank.\

\

\ Furthermore, 541 NumtS were validated by merging NumtS nuclear coordinates with HapMap annotations. Our analysis has been carried on eight HapMap individuals (NA18517, NA18507, NA18956, NA19240, NA18555, NA12878, NA19129, NA12156). For each sample, clones with a single best concordant placement (according to the fosmid end-sequence-pair analysis described in Kidd et al., 2008), have been considered. The analysis showed that 541 NumtS (at least 30bp for each one) had been sequenced in such samples.\

\ \

Credits

\

\ These data were provided by Domenico Simone and Marcella Attimonelli at Department of Biochemistry and Molecular Biology "Ernesto Quagliariello" (University of Bari, Italy). Primer designing was carried out by Francesco Calabrese and Giuseppe Mineccia. PCR validation was carried out by Martin Lang, Domenico Simone and Giuseppe Gasparre. Merging with HapMap annotations has been performed by Domenico Simone.\

\ \

References

\ \

\ Kidd JM, Cooper GM, Donahue WF, Hayden HS, Sampas N, Graves T, Hansen N, Teague B, Alkan C,\ Antonacci F et al.\ \ Mapping and sequencing of structural variation from eight human genomes.\ Nature. 2008 May 1;453(7191):56-64.\ PMID: 18451855; PMC: PMC2424287\

\ \

\ Lascaro D, Castellana S, Gasparre G, Romeo G, Saccone C, Attimonelli M.\ \ The RHNumtS compilation: features and bioinformatics approaches to locate and quantify Human\ NumtS.\ BMC Genomics. 2008 Jun 3;9:267.\ PMID: 18522722; PMC: PMC2447851\

\ \

\ Simone D, Calabrese FM, Lang M, Gasparre G, Attimonelli M.\ \ The reference human nuclear mitochondrial sequences compilation validated and implemented on the\ UCSC genome browser.\ BMC Genomics. 2011 Oct 20;12:517.\ PMID: 22013967; PMC: PMC3228558\

\ \ rep 1 color 0,60,120\ html numtSeq\ longLabel Human NumtS\ parent numtSeq\ priority 1\ shortLabel NumtS\ track numtS\ type bed 6 .\ useScore 1\ wgEncodeBuOrchidV1 ORChID V1 bigWig -0.790750 1.644750 OH Radical Cleavage Intensity Database (ORChID) V1 from ENCODE/Boston Univ 2 1 0 0 0 127 127 127 0 0 0 map 0 longLabel OH Radical Cleavage Intensity Database (ORChID) V1 from ENCODE/Boston Univ\ parent wgEncodeBuOrchidSignalView\ shortLabel ORChID V1\ subGroups view=Signal\ track wgEncodeBuOrchidV1\ type bigWig -0.790750 1.644750\ panelAppGenes PanelApp Genes bigBed 9 + Genomics England PanelApp Genes 3 1 0 0 0 127 127 127 0 0 0 https://panelapp.genomicsengland.co.uk/panels/$/gene/$/ phenDis 1 bigDataUrl /gbdb/hg19/panelApp/genes.bb\ filterValues.confidenceLevel 3,2,1,0\ itemRgb on\ labelFields geneSymbol\ longLabel Genomics England PanelApp Genes\ mouseOverField mouseOverField\ parent panelApp on\ shortLabel PanelApp Genes\ skipEmptyFields on\ skipFields chrom,chromStart,blockStarts,blockSizes,entityName,tags,status,mouseOverField\ track panelAppGenes\ type bigBed 9 +\ url https://panelapp.genomicsengland.co.uk/panels/$/gene/$/\ urlLabel Link to PanelApp\ urls omimGene="https://www.omim.org/entry/$$" ensemblGenes="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$"\ visibility pack\ pHaplo pHaploinsufficiency bigBed 9 + 2 Probability of haploinsufficiency 3 1 0 0 0 127 127 127 0 0 0 https://www.deciphergenomics.org/search?q=$$ phenDis 1 bigDataUrl /gbdb/hg19/bbi/dosageSensitivityCollins2022/pHaploDosageSensitivity.bb\ filter.pHaplo 0\ filterByRange.pHaplo on\ filterLimits.pHaplo 0:1\ itemRgb on\ longLabel Probability of haploinsufficiency\ mouseOver $name, $ensGene, pHaplo:$pHaplo\ parent dosageSensitivity on\ shortLabel pHaploinsufficiency\ showCfg on\ track pHaplo\ type bigBed 9 + 2\ url https://www.deciphergenomics.org/search?q=$$\ urlLabel Link to DECIPHER\ visibility pack\ polyASeqSitesBrainFwd PolyA-Seq Brain bigWig 0.340000 194860.187500 Poly(A)-tail sequencing of Brain from Merck (Fwd strand) 2 1 153 51 51 204 153 153 0 0 0 rna 0 color 153,51,51\ longLabel Poly(A)-tail sequencing of Brain from Merck (Fwd strand)\ parent polyASeqSitesSignalView\ shortLabel PolyA-Seq Brain\ subGroups view=Signal tissType=Brain strand=fwd\ track polyASeqSitesBrainFwd\ type bigWig 0.340000 194860.187500\ polyaDb PolyA_DB bed 4 . Reported Poly(A) Sites from PolyA_DB 0 1 51 153 51 153 204 153 0 0 0 rna 1 color 51,153,51\ longLabel Reported Poly(A) Sites from PolyA_DB\ origAssembly hg18\ parent polyA\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ priority 1\ shortLabel PolyA_DB\ track polyaDb\ type bed 4 .\ phyloP46wayPrimates Primate Cons wig -9.06 0.66 Primate Basewise Conservation by PhyloP 2 1 10 10 70 70 10 10 0 0 0 compGeno 0 altColor 70,10,10\ autoScale off\ color 10,10,70\ configurable on\ logoMaf multiz46way\ longLabel Primate Basewise Conservation by PhyloP\ maxHeightPixels 100:50:11\ noInherit on\ parent cons46wayViewphyloP off\ priority 1\ shortLabel Primate Cons\ spanList 1\ subGroups view=phyloP clade=primate\ track phyloP46wayPrimates\ type wig -9.06 0.66\ viewLimits -4:1\ windowingFunction mean\ prsEmergeAsthma PRS-E Asthma bigBed 8 + Polygenic Risk Scores eMERGE: Asthma 1 1 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg19/prsEmerge/asthma.bb\ longLabel Polygenic Risk Scores eMERGE: Asthma\ parent prsEmerge pack\ shortLabel PRS-E Asthma\ track prsEmergeAsthma\ visibility dense\ pubs Publications bed 4 Publications: Sequences in Scientific Articles 1 1 0 0 0 127 127 127 0 0 0

Description

\

This track is based on text-mining of full-text biomedical articles and includes two types of subtracks:

\ \
    \
  • Sequences found in publications, grouped by article and searched in genomes with BLAT
    • \
  • Identifiers in publications that directly relate to chromosome locations (e.g., gene symbols, SNP identifiers, etc)
    • \
\

Both sources of information are linked to the respective articles.\ Background information on how permission to full-text data was obtained can be found on the project website. \

Display Convention and Configuration

\

The sequence subtrack indicates the location of sequences in publications\ mapped back to the genome, annotated with the first author and the year of the\ publication. All matches of one article are grouped ("chained") together.\ Article titles are shown when you move the mouse cursor over the features.\ Thicker parts of the features (exons) represent matching sequences,\ connected by thin lines to matches from the same article within 30 kbp.

\ \

The subtrack "individual sequence matches" activates automatically when\ the user clicks a sequence match and follows the link "Show sequence matches individually" \ from the details page. Mouse-overs show flanking text around the sequence, and clicking\ features links to BLAT alignments.\

\ \

All other subtracks (i.e. bands, genes, SNPs) show the number of matching articles as\ the feature description. Clicking on them shows the sentences and sections in articles \ where the identifiers were found.

\ \

The track configuration includes a keyword and year filter. Keywords are space-separated\ and are searched in the article's title, author list, and abstract.

\ \

Data

\

The track is based on text from biomedical research articles, obtained as\ part of the UCSC Genocoding Project.

\ \

The current dataset consists of about 600,000 files (main text and\ supplementary files) from PubMed Central (Open-Access set) and around 6 million text\ files (main text) from Elsevier (as part of the Sciverse Apps program).

\ \

Methods

\

\ All file types (including XML, raw ASCII, PDFs and various Microsoft\ Office formats (Excel, Word, PowerPoint)) were converted to text. The results were processed \ to find groups of words that look like DNA/RNA sequences or\ words that look like protein sequences. These were then mapped with BLAT to the\ human genome and these model organisms: mouse (mm9), rat (rn4), zebrafish\ (danRer6), Drosophila melanogaster (dm3), X. tropicalis (xenTro2), Medaka\ (oryLat2), C. intestinalis (ci2), C. elegans (ce6) and yeast (sacCer2).\ \ The pipeline roughly proceeds through these steps:\

    \
  • For sequences, the best match across all genomes is used, if it is longer than 17 bp and matches at 90% identity. \ Two sets of BLAT parameters are tried, the default ones for sequences longer than 25 bp, very sensitive ones (stepSize=5) for shorter sequences.
    • \
  • Sequences are mapped to genomic DNA. Those that do not match are mapped to RefSeq cDNAs.
    • \
  • Hits from the same article that are closer than 30 kbp are\ joined into one feature (shown as exon-blocks on the browser).
    • \
  • All parts of a joined feature have to match at least 25 bp.
    • \
  • Non-unique hits are kept in the joined feature with the most members.
    • \
  • Joined features with identical members in two different genomes are kept in both genomes.
    • \
\ \

Note that due to the 90% identity filter, some sequences do not match\ anywhere in the genome. Examples include primers with added restriction sites,\ mutation primers, or any other sequence that joins or mixes two pieces of genomic\ DNA not part of RefSeq. Also note that some gene symbols correspond to \ English words which can sometimes lead to many false positives.

\ \

Credits

\

Software and processing by Maximilian Haeussler. UCSC Track visualisation by\ Larry Meyer and Hiram Clawson. Elsevier support by Max Berenstein, Raphael\ Sidi, Judd Dunham, Scott Robbins and colleagues. Original version written at the Bergman Lab,\ University of Manchester, UK. Testing by Mary Mangan, OpenHelix Inc, and Greg Roe, UCSC.

\ \

Feedback

\ Please send ideas, comments or feedback on this track to\ \ max@soe.ucsc.edu.\ \ We are very interested in getting access to more articles from publishers for this\ dataset; see the project website.\

\ \

References

\

\ Aerts S, Haeussler M, van Vooren S, Griffith OL, Hulpiau P, Jones SJ, Montgomery SB, Bergman CM,\ Open Regulatory Annotation Consortium.\ \ Text-mining assisted regulatory annotation.\ Genome Biol. 2008;9(2):R31.\ PMID: 18271954; PMC: PMC2374703\

\ \

\ Haeussler M, Gerner M, Bergman CM.\ \ Annotating genes and genomes with DNA sequences extracted from biomedical articles.\ Bioinformatics. 2011 Apr 1;27(7):980-6.\ PMID: 21325301; PMC: PMC3065681\

\ \

\ Van Noorden R.\ \ Trouble at the text mine.\ Nature. 2012 Mar 7;483(7388):134-5.\

\ phenDis 1 color 0,0,0\ compositeTrack on\ group phenDis\ longLabel Publications: Sequences in Scientific Articles\ nextExonText Next Match\ noInherit on\ prevExonText Prev Match\ priority 1\ pubsArticleTable hgFixed.pubsArticle\ pubsMarkerTable hgFixed.pubsMarkerAnnot\ pubsPslTrack pubsBlatPsl\ pubsSequenceTable hgFixed.pubsSequenceAnnot\ shortLabel Publications\ track pubs\ type bed 4\ visibility dense\ ncbiRefSeq RefSeq All genePred NCBI RefSeq genes, curated and predicted (NM_*, XM_*, NR_*, XR_*, NP_*, YP_*) 1 1 12 12 120 133 133 187 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 12,12,120\ idXref ncbiRefSeqLink mrnaAcc name\ longLabel NCBI RefSeq genes, curated and predicted (NM_*, XM_*, NR_*, XR_*, NP_*, YP_*)\ parent refSeqComposite off\ priority 1\ shortLabel RefSeq All\ track ncbiRefSeq\ ReMapDensity ReMap density bigWig ReMap density 0 1 0 0 0 127 127 127 0 0 0

Description

\

\ This track represents the ReMap Atlas of regulatory regions, which consists of a\ large-scale integrative analysis of all Public ChIP-seq data for transcriptional\ regulators from GEO, ArrayExpress, and ENCODE. \

\ \

\ Below is a schematic diagram of the types of regulatory regions: \

    \
  • ReMap 2022 Atlas (all peaks for each analyzed data set)
    • \
  • ReMap 2022 Non-redundant peaks (merged similar target)
    • \
  • ReMap 2022 Cis Regulatory Modules
    • \
\

\ \ \ \

Display Conventions and Configuration

\
    \
  • \ Each transcription factor follows a specific RGB color.\
    • \
  • \ ChIP-seq peak summits are represented by vertical bars.\
    • \
  • \ Hsap: A data set is defined as a ChIP/Exo-seq experiment in a given\ GEO/ArrayExpress/ENCODE series (e.g. GSE41561), for a given TF (e.g. ESR1), in\ a particular biological condition (e.g. MCF-7).\
    Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE41561.ESR1.MCF-7).\
    • \
  • \ Atha: The data set is defined as a ChIP-seq experiment in a given series\ (e.g. GSE94486), for a given target (e.g. ARR1), in a particular biological\ condition (i.e. ecotype, tissue type, experimental conditions; e.g.\ Col-0_seedling_3d-6BA-4h).\
    Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE94486.ARR1.Col-0_seedling_3d-6BA-4h).\
    • \
\ \

Methods

\

\ This 4th release of ReMap (2022) presents the analysis of a total of 8,103 \ quality controlled ChIP-seq (n=7,895) and ChIP-exo (n=208) data sets from public\ sources (GEO, ArrayExpress, ENCODE). The ChIP-seq/exo data sets have been mapped\ to the GRCh38/hg38 human assembly. The data set is defined as a ChIP-seq \ experiment in a given series (e.g. GSE46237), for a given TF (e.g. NR2C2), in a\ particular biological condition (i.e. cell line, tissue type, disease state, or\ experimental conditions; e.g. HELA). Data sets were labeled by concatenating\ these three pieces of information, such as GSE46237.NR2C2.HELA. \ \

\

Those merged analyses cover a total of 1,211 DNA-binding proteins\ (transcriptional regulators) such as a variety of transcription factors (TFs),\ transcription co-activators (TCFs), and chromatin-remodeling factors (CRFs) for\ 182 million peaks. \

\ \ \ \

GEO & ArrayExpress

\

\ Public ChIP-seq data sets were extracted from Gene Expression Omnibus (GEO) and\ ArrayExpress (AE) databases. For GEO, the query\ \ '('chip seq' OR 'chipseq' OR\ 'chip sequencing') AND 'Genome binding/occupancy profiling by high throughput\ sequencing' AND 'homo sapiens'[organism] AND NOT 'ENCODE'[project]'\ \ was used to return a list of all potential data sets to analyze, which were then manually \ assessed for further analyses. Data sets involving polymerases (i.e. Pol2 and\ Pol3), and some mutated or fused TFs (e.g. KAP1 N/C terminal mutation, GSE27929)\ were excluded.\

\ \

ENCODE

\

\ Available ENCODE ChIP-seq data sets for transcriptional regulators from the\ ENCODE portal were processed with the\ standardized ReMap pipeline. The list of ENCODE data was retrieved as FASTQ files from the\ ENCODE portal\ using the following filters:\

    \
  • Assay: "ChIP-seq"
    • \
  • Organism: "Homo sapiens"
    • \
  • Target of assay: "transcription factor"
    • \
  • Available data: "fastq" on 2016 June 21st
    • \
\ Metadata information in JSON format and FASTQ files\ were retrieved using the Python requests module.\

\ \

ChIP-seq processing

\

\ Both Public and ENCODE data were processed similarly. Bowtie 2 (PMC3322381) (version 2.2.9) with options -end-to-end -sensitive was used to align all\ reads on the genome. Biological and technical\ replicates for each unique combination of GSE/TF/Cell type or Biological condition\ were used for peak calling. TFBS were identified using MACS2 peak-calling tool\ (PMC3120977) (version 2.1.1.2) in order to follow ENCODE ChIP-seq guidelines,\ with stringent thresholds (MACS2 default thresholds, p-value: 1e-5). An input data\ set was used when available.\

\ \ \

Quality assessment

\

\ To assess the quality of public data sets, a score was computed based on the\ cross-correlation and the FRiP (fraction of reads in peaks) metrics developed by\ the ENCODE Consortium (https://genome.ucsc.edu/ENCODE/qualityMetrics.html). Two\ thresholds were defined for each of the two cross-correlation ratios (NSC,\ normalized strand coefficient: 1.05 and 1.10; RSC, relative strand coefficient:\ 0.8 and 1.0). Detailed descriptions of the ENCODE quality coefficients can be\ found at https://genome.ucsc.edu/ENCODE/qualityMetrics.html. The\ phantompeak tools suite was used\ (https://code.google.com/p/phantompeakqualtools/) to compute\ RSC and NSC.\

\

\ Please refer to the ReMap 2022, 2020, and 2018 publications for more details\ (citation below).\

\ \ \ \

Data Access

\

\ ReMap Atlas of regulatory regions data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ Individual BED files for specific TFs, cells/biotypes, or data sets can be\ found and downloaded on the ReMap website.\

\ \

References

\ \

\ Chèneby J, Gheorghe M, Artufel M, Mathelier A, Ballester B.\ \ ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-\ seq experiments.\ Nucleic Acids Res. 2018 Jan 4;46(D1):D267-D275.\ PMID: 29126285; PMC: PMC5753247\

\

\ Chèneby J, Ménétrier Z, Mestdagh M, Rosnet T, Douida A, Rhalloussi W, Bergon A, Lopez\ F, Ballester B.\ \ ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis\ DNA-binding sequencing experiments.\ Nucleic Acids Res. 2020 Jan 8;48(D1):D180-D188.\ PMID: 31665499; PMC: PMC7145625\

\

\ Griffon A, Barbier Q, Dalino J, van Helden J, Spicuglia S, Ballester B.\ \ Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory\ landscape.\ Nucleic Acids Res. 2015 Feb 27;43(4):e27.\ PMID: 25477382; PMC: PMC4344487\

\

\ Hammal F, de Langen P, Bergon A, Lopez F, Ballester B.\ \ ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an\ integrative analysis of DNA-binding sequencing experiments.\ Nucleic Acids Res. 2022 Jan 7;50(D1):D316-D325.\ PMID: 34751401; PMC: PMC8728178\

\ \ regulation 0 autoScale on\ bigDataUrl /gbdb/hg19/reMap/reMapDensity2022.bw\ html ../reMap\ longLabel ReMap density\ parent ReMap on\ priority 1\ shortLabel ReMap density\ track ReMapDensity\ type bigWig\ visibility hide\ rmsk RepeatMasker rmsk Repeating Elements by RepeatMasker 1 1 0 0 0 127 127 127 1 0 0

Description

\ \

\ This track was created by using Arian Smit's\ RepeatMasker\ program, which screens DNA sequences\ for interspersed repeats and low complexity DNA sequences. The program\ outputs a detailed annotation of the repeats that are present in the\ query sequence (represented by this track), as well as a modified version\ of the query sequence in which all the annotated repeats have been masked\ (generally available on the\ Downloads page). RepeatMasker uses the\ Repbase Update library of repeats from the\ Genetic \ Information Research Institute (GIRI).\ Repbase Update is described in Jurka (2000) in the References section below.\ Some newer assemblies have been made with Dfam, not Repbase. You can\ find the details for how we make our database data here in our "makeDb/doc/"\ directory.

\ \

Display Conventions and Configuration

\ \

\ In full display mode, this track displays up to ten different classes of repeats:\

    \
  • Short interspersed nuclear elements (SINE), which include ALUs
    • \
  • Long interspersed nuclear elements (LINE)
    • \
  • Long terminal repeat elements (LTR), which include retroposons
    • \
  • DNA repeat elements (DNA)
    • \
  • Simple repeats (micro-satellites)
    • \
  • Low complexity repeats
    • \
  • Satellite repeats
    • \
  • RNA repeats (including RNA, tRNA, rRNA, snRNA, scRNA, srpRNA)
    • \
  • Other repeats, which includes class RC (Rolling Circle)
    • \
  • Unknown
    • \
\

\ \

\ The level of color shading in the graphical display reflects the amount of\ base mismatch, base deletion, and base insertion associated with a repeat\ element. The higher the combined number of these, the lighter the shading.\

\ \

\ A "?" at the end of the "Family" or "Class" (for example, DNA?) signifies that\ the curator was unsure of the classification. At some point in the future,\ either the "?" will be removed or the classification will be changed.

\ \

Methods

\ \

\ Data are generated using the RepeatMasker -s flag. Additional flags\ may be used for certain organisms. Repeats are soft-masked. Alignments may\ extend through repeats, but are not permitted to initiate in them.\ See the FAQ for more information.\

\ \

Credits

\ \

\ Thanks to Arian Smit, Robert Hubley and GIRI for providing the tools and\ repeat libraries used to generate this track.\

\ \

References

\ \

\ Smit AFA, Hubley R, Green P. RepeatMasker Open-3.0.\ \ http://www.repeatmasker.org. 1996-2010.\

\ \

\ Repbase Update is described in:\

\ \

\ Jurka J.\ \ Repbase Update: a database and an electronic journal of repetitive elements.\ Trends Genet. 2000 Sep;16(9):418-420.\ PMID: 10973072\

\ \

\ For a discussion of repeats in mammalian genomes, see:\

\ \

\ Smit AF.\ \ Interspersed repeats and other mementos of transposable elements in mammalian genomes.\ Curr Opin Genet Dev. 1999 Dec;9(6):657-63.\ PMID: 10607616\

\ \

\ Smit AF.\ \ The origin of interspersed repeats in the human genome.\ Curr Opin Genet Dev. 1996 Dec;6(6):743-8.\ PMID: 8994846\

\ rep 0 canPack off\ group rep\ longLabel Repeating Elements by RepeatMasker\ maxWindowToDraw 10000000\ priority 1\ shortLabel RepeatMasker\ spectrum on\ track rmsk\ type rmsk\ visibility dense\ burgeRnaSeqGemMapperAlignBT474 RNA-seq BT474 bed 12 Burge Lab RNA-seq 32mer Reads from BT474 Breast Tumor Cell Line 1 1 12 12 120 133 133 187 0 0 0 expression 1 longLabel Burge Lab RNA-seq 32mer Reads from BT474 Breast Tumor Cell Line\ parent burgeRnaSeqGemMapperAlignViewAlignments off\ shortLabel RNA-seq BT474\ subGroups view=Alignments tissueType=BT474\ track burgeRnaSeqGemMapperAlignBT474\ gnomadGenomes1XPercentage Sample % > 1X bigWig 0 1 gnomAD Percentage of Genome Samples with at least 1X Coverage 0 1 255 0 0 255 127 127 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.genomes.coverage.depth1.bw\ color 255,0,0\ longLabel gnomAD Percentage of Genome Samples with at least 1X Coverage\ parent gnomadGenomesReadDepthPct off\ priority 1\ shortLabel Sample % > 1X\ subGroups view=gRDepth\ track gnomadGenomes1XPercentage\ gnomadExomes1XPercentage Sample % > 1X bigWig 0 1 gnomAD Percentage of Exome Samples with at least 1X Coverage 0 1 255 0 0 255 127 127 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.exomes.coverage.depth1.bw\ color 255,0,0\ longLabel gnomAD Percentage of Exome Samples with at least 1X Coverage\ parent gnomadExomesReadDepthPct off\ priority 1\ shortLabel Sample % > 1X\ subGroups view=eRDepth\ track gnomadExomes1XPercentage\ covidHgiGwasR4PvalA2 Severe COVID vars bigLolly 9 + Severe respiratory COVID risk variants from the COVID-19 HGI GWAS Analysis A2 (4336 cases, 12 studies, Rel 4: Oct 2020) 0 1 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22, varRep 1 bigDataUrl /gbdb/hg19/covidHgiGwas/covidHgiGwasR4.A2.hg19.bb\ longLabel Severe respiratory COVID risk variants from the COVID-19 HGI GWAS Analysis A2 (4336 cases, 12 studies, Rel 4: Oct 2020)\ parent covidHgiGwasR4Pval on\ priority 1\ shortLabel Severe COVID vars\ track covidHgiGwasR4PvalA2\ decodeSexAveraged Sex Avg bigWig 0.0 108.804 deCODE recombination map, sex-average 2 1 109 51 43 182 153 149 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 0 color 109,51,43\ configurable on\ longLabel deCODE recombination map, sex-average\ parent avgView\ priority 1\ shortLabel Sex Avg\ subGroups view=avg\ track decodeSexAveraged\ type bigWig 0.0 108.804\ snpediaAll SNPedia all bigBed 9 + SNPedia all SNPs (including empty pages) 0 1 50 0 100 152 127 177 0 0 0 https://www.snpedia.com/index.php/$$ phenDis 1 bigDataUrl /gbdb/hg19/bbi/snpediaAll.bb\ color 50,0,100\ exonNumbers off\ itemRgb on\ longLabel SNPedia all SNPs (including empty pages)\ mouseOverField note\ parent snpedia\ searchIndex name\ shortLabel SNPedia all\ track snpediaAll\ type bigBed 9 +\ url https://www.snpedia.com/index.php/$$\ urlLabel Link to SNPedia page:\ unipAliSwissprot SwissProt Aln. bigPsl UCSC alignment of SwissProt proteins to genome (dark blue: main isoform, light blue: alternative isoforms) 3 1 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorTickColor contrastingColor\ baseColorUseCds given\ bigDataUrl /gbdb/hg19/uniprot/unipAliSwissprot.bb\ indelDoubleInsert on\ indelQueryInsert on\ itemRgb on\ labelFields name,acc,uniprotName,geneName,hgncSym,refSeq,refSeqProt,ensProt\ longLabel UCSC alignment of SwissProt proteins to genome (dark blue: main isoform, light blue: alternative isoforms)\ mouseOverField protFullNames\ parent uniprot\ priority 1\ searchIndex name,acc\ shortLabel SwissProt Aln.\ showDiffBasesAllScales on\ skipFields isMain\ track unipAliSwissprot\ type bigPsl\ urls acc="https://www.uniprot.org/uniprot/$$" hgncId="https://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" refSeq="https://www.ncbi.nlm.nih.gov/nuccore/$$" refSeqProt="https://www.ncbi.nlm.nih.gov/protein/$$" ncbiGene="https://www.ncbi.nlm.nih.gov/gene/$$" entrezGene="https://www.ncbi.nlm.nih.gov/gene/$$" ensGene="https://www.ensembl.org/Gene/Summary?g=$$"\ visibility pack\ hiSeqDepthTopPt1Pct Top 0.001 Depth bed 3 Top 0.001 of Read Depth Distribution 0 1 139 69 19 197 162 137 0 0 0 map 1 longLabel Top 0.001 of Read Depth Distribution\ parent hiSeqDepth\ priority 1\ shortLabel Top 0.001 Depth\ track hiSeqDepthTopPt1Pct\ TotalCounts_Fwd Total counts of CAGE reads (fwd) bigWig Total counts of CAGE reads forward 2 1 255 0 0 255 127 127 0 0 0 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ctssTotalCounts.fwd.bw\ color 255,0,0\ dataVersion FANTOM5 phase2.5\ longLabel Total counts of CAGE reads forward\ parent Total_counts_multiwig\ shortLabel Total counts of CAGE reads (fwd)\ subGroups category=total strand=forward\ track TotalCounts_Fwd\ type bigWig\ knownGene UCSC Genes genePred knownGenePep knownGeneMrna UCSC Genes (RefSeq, GenBank, CCDS, Rfam, tRNAs & Comparative Genomics) 3 1 12 12 120 133 133 187 0 0 0

Description

\

\ The UCSC Genes track is a set of gene predictions based on data from RefSeq, GenBank, CCDS,\ Rfam, and the tRNA Genes track. The track\ includes both protein-coding genes and\ non-coding RNA genes. Both types of genes can produce non-coding transcripts, but non-coding\ RNA genes do not produce protein-coding transcripts. This is a moderately conservative set of\ predictions. Transcripts of protein-coding genes require the support of one RefSeq RNA, or one\ GenBank RNA sequence plus at least one additional line of evidence. Transcripts of non-coding RNA\ genes require the support of one Rfam or tRNA prediction. Compared to RefSeq, this gene set has\ generally about 10% more protein-coding genes, approximately four times as many putative non-coding\ genes, and about twice as many splice variants.

\ \

\ For more information on the different gene tracks, see our Genes FAQ.

\ \

Display Conventions and Configuration

\

\ This track in general follows the display conventions for\ gene prediction tracks. The exons\ for putative non-coding genes and untranslated regions are represented by relatively thin blocks,\ while those for coding open reading frames are thicker. The following color key is used:

\ \
    \
  • Black -- feature has a corresponding entry in the Protein\ Data Bank (PDB)
    • \
  • Dark blue -- transcript has been reviewed\ or validated by either the RefSeq, SwissProt or CCDS staff
    • \
  • Medium blue -- other RefSeq transcripts
    • \
  • Light blue -- non-RefSeq transcripts
    • \
\ \

\ This track contains an optional codon coloring\ feature that allows users to quickly validate and compare gene predictions.

\ \

Methods

\

\ The UCSC Genes are built using a multi-step pipeline:

\
    \
  1. RefSeq and GenBank RNAs are aligned to the genome with BLAT, keeping only the best alignments\ for each RNA. Alignments are discarded if they do not meet certain sequence identity and coverage\ filters. All sequences must align with high (98%) identity. The sequence coverage must be at least\ 90% for shorter sequences (those with 2500 or fewer bases), with the coverage threshold\ progressively relaxed for longer sequences.
    2. \
  2. Alignments are broken up at non-intronic gaps, with small isolated fragments thrown out.
    3. \
  3. A splicing graph is created for each set of overlapping alignments. This graph has an edge\ for each exon or intron, and a vertex for each splice site, start, and end. Each RNA that\ contributes to an edge is kept as evidence for that edge. Gene models from the Consensus CDS project\ (CCDS) are also added to the graph.
    4. \
  4. A similar splicing graph is created in the mouse, based on mouse RNA and ESTs. If the mouse\ graph has an edge that is orthologous to an edge in the human graph, that is added to the evidence\ for the human edge.
    5. \
  5. If an edge in the splicing graph is supported by two or more human ESTs, it is added as\ evidence for the edge.
    6. \
  6. If there is an Exoniphy prediction for an exon, that is added as evidence.
    7. \
  7. The graph is traversed to generate all unique transcripts. The traversal is guided by the\ initial RNAs to avoid a combinatorial explosion in alternative splicing. All RefSeq transcripts are\ output. For other multi-exon transcripts to be output, an edge supported by at least one additional\ line of evidence beyond the RNA is required. Single-exon genes require either two RNAs or two \ additional lines of evidence beyond the single RNA.
    8. \
  8. Alignments are merged in from the hg19\ tRNA Genes track and from Rfam\ in regions that are syntenic with the mm9 mouse genome.
    9. \
  9. Protein predictions are generated. For non-RefSeq transcripts we use the txCdsPredict program to\ determine if the transcript is protein-coding, and if so, the locations of the start and stop codons. \ The program weighs as positive evidence the length of the protein, the presence of a Kozak consensus\ sequence at the start codon, and the length of the orthologous predicted protein in other species.\ As negative evidence it considers nonsense-mediated decay and start codons in any frame upstream of\ the predicted start codon. For RefSeq transcripts the RefSeq protein prediction is used directly\ instead of this procedure. For CCDS proteins the CCDS protein is used directly.
    10. \
  10. The corresponding UniProt protein is found, if any.
    11. \
  11. The transcript is assigned a permanent "uc" accession. If the transcript was not in\ the previous release of UCSC Genes, the accession ends with the suffix ".1" indicating\ that this is\ the first version of this transcript. If the transcript is identical to some transcript in the\ previous release of UCSC Genes, the accession is re-used with the same version number. If the\ transcript is not identical to any transcript in the previous release but it overlaps a similar\ transcript with a compatible structure, the previous accession is re-used with the version number\ incremented.
    12. \
\ \

Related Data

\

\ The UCSC Genes transcripts are annotated in numerous tables, each of which is also available as a\ downloadable file. These\ include tables that link UCSC Genes transcripts to external datasets (such as\ knownToLocusLink, which maps UCSC Genes transcripts to Entrez identifiers, previously known\ as Locus Link identifiers), and tables that detail some property of UCSC Genes transcript sequences\ (such as knownToPfam, which identifies any Pfam domains found in the UCSC Genes\ protein-coding transcripts). One can see a full list of the associated tables in the\ Table Browser by selecting UCSC Genes at the track menu;\ this list is then available at the table menu. Note that some of these tables refer to UCSC\ Genes by its former name of Known Genes, sometimes abbreviated as known or kg.\ While the complete set of annotation tables is too long to describe, some of the more important\ tables are described below.

\
    \
  • kgXref identifies the RefSeq, SwissProt, Rfam, or tRNA sequences (if any) on which each\ transcript was based.
    • \
  • knownToRefSeq identifies the RefSeq transcript that each UCSC Genes transcript is most\ closely associated with. That RefSeq transcript is either the RefSeq on which the UCSC Genes\ transcript was based, if there is one, or it's the RefSeq transcript that the UCSC Genes transcript\ overlaps at the most bases.
    • \
  • knownGeneMrna contains the mRNA sequence that represents each UCSC Genes transcript. If\ the transcript is based on a RefSeq transcript, then this table contains the RefSeq transcript,\ including any portions that do not align to the genome.
    • \
  • knownGeneTxMrna contains mRNA sequences for each UCSC Genes transcript. In contrast to\ the sequencess in knownGeneMrna, these sequences are derived by obtaining the sequences for each exon\ from the reference genome and concatenating these exonic sequences.
    • \
  • knownGenePep contains the protein sequences derived from the knownGeneMrna transcript\ sequences. Any protein-level annotations, such as the contents of the knownToPfam table, are based\ on these sequences.
    • \
  • knownGeneTxPep contains the protein translation (if any) of each mRNA sequence in\ knownGeneTxMrna.
    • \
  • knownIsoforms maps each transcript to a cluster ID, a cluster of isoforms of\ the same gene.
    • \
  • knownCanonical identifies the canonical isoform of each cluster ID, or gene. Generally,\ this is the longest isoform.
    • \
\ \

Data access

\

\ UCSC Genes (knownGene for hg19) can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator.\ The genePred files for hg19 are available in our\ \ downloads directory or in our\ \ genes downloads directory in GTF format.\ All the tables can also be queried directly from our public MySQL\ servers. Information on accessing this data through MySQL can be found on our\ help page as well as on\ our blog.

\ \

Credits

\

\ The UCSC Genes track was produced at UCSC using a computational pipeline developed by Jim Kent,\ Chuck Sugnet, Melissa Cline and Mark Diekhans. It is based on data from NCBI\ RefSeq,\ UniProt \ (including TrEMBL and TrEMBL-NEW), \ CCDS, and\ GenBank as well as data from \ Rfam and\ the Todd Lowe lab.\ Our thanks to the people running these databases and to the scientists worldwide who have made\ contributions to them.

\ \

References

\

\ Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\ GenBank: update.\ Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6.\ PMID: 14681350; PMC: PMC308779\

\ \

\ Chan PP, Lowe TM.\ \ GtRNAdb: a database of transfer RNA genes detected in genomic sequence.\ Nucleic Acids Res. 2009 Jan;37(Database issue):D93-7.\ PMID: 18984615; PMC: PMC2686519\

\ \

\ Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL,\ Eddy SR et al.\ \ Rfam: Wikipedia, clans and the "decimal" release.\ Nucleic Acids Res. 2011 Jan;39(Database issue):D141-5.\ PMID: 21062808; PMC: PMC3013711\

\ \

\ Hsu F, Kent WJ, Clawson H, Kuhn RM, Diekhans M, Haussler D.\ The UCSC Known Genes.\ Bioinformatics. 2006 May 1;22(9):1036-46.\ PMID: 16500937\

\ \

\ Kent WJ.\ BLAT - the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

\ \

\ Lowe TM, Eddy SR.\ \ tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.\ Nucleic Acids Res. 1997 Mar 1;25(5):955-64.\ PMID: 9023104; PMC: PMC146525\

\ \

\ UniProt Consortium.\ \ Reorganizing the protein space at the Universal Protein Resource (UniProt).\ Nucleic Acids Res. 2012 Jan;40(Database issue):D71-5.\ PMID: 22102590; PMC: PMC3245120\

\ genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ bigGeneDataUrl /gbdb/hg19/knownGene.bb\ color 12,12,120\ defaultLinkedTables kgXref\ directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s\ exonNumbers on\ group genes\ hgGene on\ hgsid on\ idXref kgAlias kgID alias\ intronGap 12\ longLabel UCSC Genes (RefSeq, GenBank, CCDS, Rfam, tRNAs & Comparative Genomics)\ priority 1\ shortLabel UCSC Genes\ track knownGene\ type genePred knownGenePep knownGeneMrna\ visibility pack\ liftOverHg38 UCSC liftOver to hg38 chain hg38 Lifting: UCSC liftOver alignments to hg38 0 1 0 0 0 127 127 127 0 0 0 map 1 chainLinearGap medium\ chainMinScore 3000\ longLabel Lifting: UCSC liftOver alignments to hg38\ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91\ matrixHeader A, C, G, T\ otherDb hg38\ parent liftHg38\ priority 1\ shortLabel UCSC liftOver to hg38\ track liftOverHg38\ type chain hg38\ comments UCSC Unusual Regions bigBed 9 + UCSC unusual regions on assembly structure (manually annotated) 1 1 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/bbi/problematic/comments.bb\ longLabel UCSC unusual regions on assembly structure (manually annotated)\ mouseOverField note\ parent problematic\ priority 1\ searchIndex name\ searchTrix /gbdb/hg19/bbi/problematic/notes.ix\ shortLabel UCSC Unusual Regions\ track comments\ type bigBed 9 +\ visibility dense\ vegaGene Vega Protein Genes genePred vegaPep Vega Protein-Coding Annotations 0 1 0 50 225 127 152 240 0 0 31 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY,chr6_apd_hap1,chr6_cox_hap2,chr6_dbb_hap3,chr6_mann_hap4,chr6_mcf_hap5,chr6_qbl_hap6,chr6_ssto_hap7, http://vega.sanger.ac.uk/Homo_sapiens/transview?transcript=$$

Description and Methods

\

\ This track shows gene annotations from the Vertebrate Genome Annotation (Vega)\ database. Annotations are divided into two subtracks from the \ Vega Human Genome Annotation project: \

    \
  • Vega Protein-Coding and Non-Coding Gene Annotations\
  • Vega Annotated Pseudogenes and Immunoglobulin Segments\
\ \

\ The following information is an excerpt from the\ \ Vertebrate Genome Annotation home page:

\

\ "The Vega database\ is designed to be a central repository for high-quality, frequently updated\ manual annotation of different vertebrate finished genome sequence.\ Vega attempts to present consistent high-quality curation of the published\ chromosome sequences. Finished genomic sequence is analysed on a\ clone-by-clone basis using\ a combination of similarity searches against DNA and protein databases\ as well as a series of ab initio gene predictions (GENSCAN, Fgenes).\ The annotation is based on supporting evidence only."

\

\ "In addition, comparative analysis using vertebrate datasets such as\ the Riken mouse cDNAs and Genoscope Tetraodon nigroviridis Ecores\ (Evolutionary Conserved Regions) are used for novel gene discovery."

\

\ \

Display Conventions and Configuration

\

\ This track follows the display conventions for\ gene prediction\ tracks. Transcript\ type (and other details) may be found by clicking on the transcript\ identifier which forms the outside link to the Vega transcript details page.\ Further information on the gene and transcript classification may be found\ here.\

\ \

Credits

\

\ Thanks to Steve Trevanion at the\ \ Wellcome Trust Sanger Institute \ for providing the GTF and FASTA files for the Vega annotations. Vega \ acknowledgements and publications are listed \ here.\ genes 1 color 0,50,225\ html vegaGeneComposite\ longLabel Vega Protein-Coding Annotations\ parent vegaGeneComposite\ priority 1\ shortLabel Vega Protein Genes\ track vegaGene\ Enhancers Enhancers bigBed 12 . FANTOM5: Enhancers 1 1.1 0 0 0 127 127 127 0 0 0

Description

\

\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\

\ \

Display Conventions and Configuration

\

\ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

\ \

Methods

\

Protocol

\

\ Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE\ (Kanamori-Katyama et al. 2011).\

    \
  • hCAGE
    • \
  • LQhCAGE
    • \
\

\

Samples

\

\ Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\

    \
  • Primary cell
    • \
  • Tissue
    • \
  • Cell Line
    • \
  • Time course
    • \
  • Fractionation
    • \
\

\

TSS peaks and enhancers

\

\ TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They \ are named as "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or\ "p@CHROM:START..END,STRAND" otherwise. The CAGE data is also used to produce an atlas of active, in\ vivo-transcribed enhancers (Andersson et al. 2014). The summary tracks consist of the TSS (CAGE)\ peaks, and summary profiles of TSS activities (total and maximum values). The summary track consists of the\ following tracks.\

    \
  • TSS (CAGE) peaks\
      \
    • the robust peaks
      • \
    \
  • Enhancers
    • \ \
  • TSS summary profiles\
      \
    • Total counts and TPM (tags per million) in all the samples
      • \
    • Maximum counts and TPM among the samples
      • \
    \
    • \
\ \

TSS activity

\

\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag\ starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read\ counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as\ TPM (tags per million).\

\ \
\
Categories of individual samples
\
- Cell Line hCAGE
\
- Cell Line LQhCAGE
\
- fractionation hCAGE
\
- Primary cell hCAGE
\
- Primary cell LQhCAGE
\
- Time course hCAGE
\
- Tissue hCAGE
\
\ \

FANTOM-NET enhancers

\

\ A set of enhancers consist of the ones identified by Andersson et al. 2014 and the ones by Hirabayashi\ et al. 2019

\ \

FANTOM CAT

\

\ FANTOM CAGE associated transcriptome (FANTOM CAT) is a meta-assembly where FANTOM5 CAGE datasets\ were integrated with transcript models from diverse sources. Transcription Initiation Evidence Score\ (TIEScore) is a custom metric that evaluates the properties of a pair of CAGE cluster and transcript\ model to quantify the likelihood that the corresponding CAGE transcription start site (TSS) is\ genuine. TIEScore was first applied to each of the five transcript model collections separately\ and then merged into a non-redundant transcript set. Specifically, the transcript models from\ GENCODEv19 were used as the initial reference to sequentially overlay onto them the transcripts\ from the other four collections, in sequence of Human BodyMap 2.0, miTranscriptome, ENCODE, and\ FANTOM5 RNA-seq assembly. For more details, please refer to Hon et al. 2017.\

\ \

Data Access

\

\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.

\ \

Credits

\

\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.

\ \

References

\

\ Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C,\ Suzuki T et al.\ \ An atlas of active enhancers across human cell types and tissues.\ Nature. 2014 Mar 27;507(7493):455-461.\ PMID: 24670763; PMC: PMC5215096\

\ \

\ FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\ Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\ \ A promoter-level mammalian expression atlas.\ Nature. 2014 Mar 27;507(7493):462-70.\ PMID: 24670764; PMC: PMC4529748\

\ \

\ Hirabayashi S, Bhagat S, Matsuki Y, Takegami Y, Uehata T, Kanemaru A, Itoh M, Shirakawa K, Takaori-\ Kondo A, Takeuchi O et al.\ \ NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements.\ Nat Genet. 2019 Sep;51(9):1369-1379.\ PMID: 31477927\

\ \

\ Hon CC, Ramilowski JA, Harshbarger J, Bertin N, Rackham OJ, Gough J, Denisenko E, Schmeier S,\ Poulsen TM, Severin J et al.\ \ An atlas of human long non-coding RNAs with accurate 5' ends.\ Nature. 2017 Mar 9;543(7644):199-204.\ PMID: 28241135; PMC: PMC6857182\

\ \ \

\ Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\ N, Daub CO et al.\ \ Unamplified cap analysis of gene expression on a single-molecule sequencer.\ Genome Res. 2011 Jul;21(7):1150-9.\ PMID: 21596820; PMC: PMC3129257\

\ \

\ Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\ Ishikawa-Kato S et al.\ \ Gateways to the FANTOM5 promoter level mammalian expression atlas.\ Genome Biol. 2015 Jan 5;16(1):22.\ PMID: 25723102; PMC: PMC4310165\

\ regulation 1 bigDataUrl /gbdb/hg19/fantom5/human_permissive_enhancers_phase_1_and_2.bb\ dataVersion FANTOM5 phase2.5\ html fantom5.html\ longLabel FANTOM5: Enhancers\ parent fantom5\ priority 1.1\ shortLabel Enhancers\ subGroups group=enhancer\ track Enhancers\ type bigBed 12 .\ visibility dense\ FANTOM-NET_Enhancers FANTOM-NET Enhancers bigBed 12 . FANTOM5: FANTOM-NET Enhancers 0 1.1 0 0 0 127 127 127 0 0 0

Description

\

\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\

\ \

Display Conventions and Configuration

\

\ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

\ \

Methods

\

Protocol

\

\ Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE\ (Kanamori-Katyama et al. 2011).\

    \
  • hCAGE
    • \
  • LQhCAGE
    • \
\

\

Samples

\

\ Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\

    \
  • Primary cell
    • \
  • Tissue
    • \
  • Cell Line
    • \
  • Time course
    • \
  • Fractionation
    • \
\

\

TSS peaks and enhancers

\

\ TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They \ are named as "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or\ "p@CHROM:START..END,STRAND" otherwise. The CAGE data is also used to produce an atlas of active, in\ vivo-transcribed enhancers (Andersson et al. 2014). The summary tracks consist of the TSS (CAGE)\ peaks, and summary profiles of TSS activities (total and maximum values). The summary track consists of the\ following tracks.\

    \
  • TSS (CAGE) peaks\
      \
    • the robust peaks
      • \
    \
  • Enhancers
    • \ \
  • TSS summary profiles\
      \
    • Total counts and TPM (tags per million) in all the samples
      • \
    • Maximum counts and TPM among the samples
      • \
    \
    • \
\ \

TSS activity

\

\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag\ starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read\ counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as\ TPM (tags per million).\

\ \
\
Categories of individual samples
\
- Cell Line hCAGE
\
- Cell Line LQhCAGE
\
- fractionation hCAGE
\
- Primary cell hCAGE
\
- Primary cell LQhCAGE
\
- Time course hCAGE
\
- Tissue hCAGE
\
\ \

FANTOM-NET enhancers

\

\ A set of enhancers consist of the ones identified by Andersson et al. 2014 and the ones by Hirabayashi\ et al. 2019

\ \

FANTOM CAT

\

\ FANTOM CAGE associated transcriptome (FANTOM CAT) is a meta-assembly where FANTOM5 CAGE datasets\ were integrated with transcript models from diverse sources. Transcription Initiation Evidence Score\ (TIEScore) is a custom metric that evaluates the properties of a pair of CAGE cluster and transcript\ model to quantify the likelihood that the corresponding CAGE transcription start site (TSS) is\ genuine. TIEScore was first applied to each of the five transcript model collections separately\ and then merged into a non-redundant transcript set. Specifically, the transcript models from\ GENCODEv19 were used as the initial reference to sequentially overlay onto them the transcripts\ from the other four collections, in sequence of Human BodyMap 2.0, miTranscriptome, ENCODE, and\ FANTOM5 RNA-seq assembly. For more details, please refer to Hon et al. 2017.\

\ \

Data Access

\

\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.

\ \

Credits

\

\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.

\ \

References

\

\ Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C,\ Suzuki T et al.\ \ An atlas of active enhancers across human cell types and tissues.\ Nature. 2014 Mar 27;507(7493):455-461.\ PMID: 24670763; PMC: PMC5215096\

\ \

\ FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\ Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\ \ A promoter-level mammalian expression atlas.\ Nature. 2014 Mar 27;507(7493):462-70.\ PMID: 24670764; PMC: PMC4529748\

\ \

\ Hirabayashi S, Bhagat S, Matsuki Y, Takegami Y, Uehata T, Kanemaru A, Itoh M, Shirakawa K, Takaori-\ Kondo A, Takeuchi O et al.\ \ NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements.\ Nat Genet. 2019 Sep;51(9):1369-1379.\ PMID: 31477927\

\ \

\ Hon CC, Ramilowski JA, Harshbarger J, Bertin N, Rackham OJ, Gough J, Denisenko E, Schmeier S,\ Poulsen TM, Severin J et al.\ \ An atlas of human long non-coding RNAs with accurate 5' ends.\ Nature. 2017 Mar 9;543(7644):199-204.\ PMID: 28241135; PMC: PMC6857182\

\ \ \

\ Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\ N, Daub CO et al.\ \ Unamplified cap analysis of gene expression on a single-molecule sequencer.\ Genome Res. 2011 Jul;21(7):1150-9.\ PMID: 21596820; PMC: PMC3129257\

\ \

\ Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\ Ishikawa-Kato S et al.\ \ Gateways to the FANTOM5 promoter level mammalian expression atlas.\ Genome Biol. 2015 Jan 5;16(1):22.\ PMID: 25723102; PMC: PMC4310165\

\ regulation 1 bigDataUrl /gbdb/hg19/fantom5/Human_FANTOM-NET_enhancers.bb\ dataVersion FANTOM5 NET\ html fantom5.html\ longLabel FANTOM5: FANTOM-NET Enhancers\ parent fantom5\ priority 1.1\ shortLabel FANTOM-NET Enhancers\ subGroups group=enhancer\ track FANTOM-NET_Enhancers\ type bigBed 12 .\ visibility hide\ lincRNAsAllCellTypeTopView lincRNA RNA-Seq Reads bed 5 + lincRNA RNA-Seq reads expression abundances 1 1.1 0 0 0 127 127 127 0 0 0

Description

\ \

This track displays the Human Body Map lincRNAs (large intergenic non\ coding RNAs) and TUCPs (transcripts of uncertain coding potential), as well as their\ expression levels across 22 human tissues and cell lines. The Human Body Map catalog was generated\ by integrating previously existing annotation sources with transcripts that were de-novo assembled\ from RNA-Seq data. These transcripts were collected from ~4 billion RNA-Seq reads across 24 tissues \ and cell types.

\ \

Expression abundance was estimated by Cufflinks (Trapnell et al., 2010) based on RNA-Seq. \ Expression abundances were estimated on the gene locus level, rather than for each transcript \ separately and are given as raw FPKM. The prefixes tcons_ and tcons_l2_ are used to describe \ lincRNAs and TUCP transcripts, respectively. Specific details about the catalog generation and data \ sets used for this study can be found in Cabili et al (2011). Extended \ characterization of each transcript in the human body map catalog can be found at the Human lincRNA\ Catalog website.

\ \

Expression abundance scores range from 0 to 1000, and are displayed from light blue to dark blue\ respectively:

\ \ \

01000

\ \

Credits

\ \

The body map RNA-Seq data was kindly provided by the Gene Expression\ Applications research group at Illumina.

\ \

References

\ \

\ Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL.\ \ Integrative annotation of human large intergenic noncoding RNAs reveals global properties and\ specific subclasses.\ Genes Dev. 2011 Sep 15;25(18):1915-27.\ PMID: 21890647; PMC: PMC3185964\

\ \

\ Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter\ L.\ \ Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform\ switching during cell differentiation.\ Nat Biotechnol. 2010 May;28(5):511-5.\ PMID: 20436464; PMC: PMC3146043\

\ genes 1 compositeTrack on\ configurable on\ dimensions dimensionY=tissueType\ dragAndDrop subTracks\ html lincRNAs\ longLabel lincRNA RNA-Seq reads expression abundances\ noInherit on\ onlyVisibility dense\ priority 1.1\ shortLabel lincRNA RNA-Seq Reads\ sortOrder view=+ tissueType=+\ subGroup1 view Views lincRNAsRefseqExp=RefSeq_Expression_Ratio\ subGroup2 tissueType Tissue_Type adipose=Adipose adrenal=Adrenal brain=Brain brain_r=Brain_R breast=Breast colon=Colon foreskin_r=Foreskin_R heart=Heart hlf_r1=hLF_r1 hlf_r2=hLF_r2 kidney=Kidney liver=Liver lung=Lung lymphnode=LymphNode ovary=Ovary placenta_r=Placenta_R prostate=Prostate skeletalmuscle=SkeletalMuscle testes=Testes testes_r=Testes_R thyroid=Thyroid whitebloodcell=WhiteBloodCell\ superTrack lincRNAs dense\ track lincRNAsAllCellTypeTopView\ type bed 5 +\ lincRNAsAllCellType lincRNAsAllCellType bed 5 + lincRNA RNA-Seq reads expression abundances 1 1.1 0 60 120 127 157 187 1 0 0 genes 1 color 0, 60, 120\ longLabel lincRNA RNA-Seq reads expression abundances\ parent lincRNAsAllCellTypeTopView\ shortLabel lincRNAsAllCellType\ track lincRNAsAllCellType\ useScore 1\ view lincRNAsRefseqExp\ visibility dense\ wgEncodeRegTxn Transcription bigWig 0 65500 Transcription Levels Assayed by RNA-seq on 9 Cell Lines from ENCODE 0 1.1 0 0 0 127 127 127 0 0 0

Description

\

\ This track shows transcription levels for several cell types as assayed by high-throughput\ sequencing of polyadenylated RNA (RNA-seq).\ Additional views of this dataset and additional documentation on the methods used\ for this track are available at the\ ENCODE Caltech RNA-seq \ page. The data shown here are derived from the Raw Signal view from the paired \ 75-mer 200 bp insert size reads. The two replicates of the signal were pooled and normalized\ so that the total genome-wide signal sums to 10 billion.\

\

Display Conventions and Configuration

\

By default, this track uses a transparent overlay method of displaying data from a number of cell \ lines in the same vertical space. Each of the cell lines in this track is associated with a particular\ color and these cell line colors are consistent across all tracks that are part of the\ ENCODE Regulation supertrack.\ These colors are relatively light and saturated so as to work best with the transparent overlay. \ Unfortunately, outside the ENCODE Regulation tracks, older cell line\ color conventions are used that don't match the cell line colors used in\ the ENCODE Regulation tracks. The older colors were not used in the\ ENCODE Regulation tracks because they were too dark for the transparent\ overlay.\

\

Credits

\

\ This track shows data from the Wold Lab at Caltech,\ as part of the ENCODE Project Consortium. \

\

Release Notes

\

\ This is release 2 (July 2012) of this track which includes two new subtracks for HeLa-S3 and HepG2.\

\

Data Release Policy

\

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

\ \ regulation 1 aggregate transparentOverlay\ allButtonPair on\ container multiWig\ dragAndDrop subTracks\ longLabel Transcription Levels Assayed by RNA-seq on 9 Cell Lines from ENCODE\ maxHeightPixels 100:30:11\ noInherit on\ priority 1.1\ shortLabel Transcription\ showSubtrackColorOnUi on\ superTrack wgEncodeReg hide\ track wgEncodeRegTxn\ transformFunc LOG\ type bigWig 0 65500\ viewLimits 0:8\ visibility hide\ enhancer_promoter_correlations_distances_cell_type Enhancer - promoter correlations distances cell type bigBed 12 . FANTOM5: Enhancer - promoter correlations distances cell type 4 1.11 0 0 0 127 127 127 0 0 0

Description

\

\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\

\ \

Display Conventions and Configuration

\

\ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

\ \

Methods

\

Protocol

\

\ Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE\ (Kanamori-Katyama et al. 2011).\

    \
  • hCAGE
    • \
  • LQhCAGE
    • \
\

\

Samples

\

\ Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\

    \
  • Primary cell
    • \
  • Tissue
    • \
  • Cell Line
    • \
  • Time course
    • \
  • Fractionation
    • \
\

\

TSS peaks and enhancers

\

\ TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They \ are named as "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or\ "p@CHROM:START..END,STRAND" otherwise. The CAGE data is also used to produce an atlas of active, in\ vivo-transcribed enhancers (Andersson et al. 2014). The summary tracks consist of the TSS (CAGE)\ peaks, and summary profiles of TSS activities (total and maximum values). The summary track consists of the\ following tracks.\

    \
  • TSS (CAGE) peaks\
      \
    • the robust peaks
      • \
    \
  • Enhancers
    • \ \
  • TSS summary profiles\
      \
    • Total counts and TPM (tags per million) in all the samples
      • \
    • Maximum counts and TPM among the samples
      • \
    \
    • \
\ \

TSS activity

\

\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag\ starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read\ counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as\ TPM (tags per million).\

\ \
\
Categories of individual samples
\
- Cell Line hCAGE
\
- Cell Line LQhCAGE
\
- fractionation hCAGE
\
- Primary cell hCAGE
\
- Primary cell LQhCAGE
\
- Time course hCAGE
\
- Tissue hCAGE
\
\ \

FANTOM-NET enhancers

\

\ A set of enhancers consist of the ones identified by Andersson et al. 2014 and the ones by Hirabayashi\ et al. 2019

\ \

FANTOM CAT

\

\ FANTOM CAGE associated transcriptome (FANTOM CAT) is a meta-assembly where FANTOM5 CAGE datasets\ were integrated with transcript models from diverse sources. Transcription Initiation Evidence Score\ (TIEScore) is a custom metric that evaluates the properties of a pair of CAGE cluster and transcript\ model to quantify the likelihood that the corresponding CAGE transcription start site (TSS) is\ genuine. TIEScore was first applied to each of the five transcript model collections separately\ and then merged into a non-redundant transcript set. Specifically, the transcript models from\ GENCODEv19 were used as the initial reference to sequentially overlay onto them the transcripts\ from the other four collections, in sequence of Human BodyMap 2.0, miTranscriptome, ENCODE, and\ FANTOM5 RNA-seq assembly. For more details, please refer to Hon et al. 2017.\

\ \

Data Access

\

\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.

\ \

Credits

\

\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.

\ \

References

\

\ Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C,\ Suzuki T et al.\ \ An atlas of active enhancers across human cell types and tissues.\ Nature. 2014 Mar 27;507(7493):455-461.\ PMID: 24670763; PMC: PMC5215096\

\ \

\ FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\ Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\ \ A promoter-level mammalian expression atlas.\ Nature. 2014 Mar 27;507(7493):462-70.\ PMID: 24670764; PMC: PMC4529748\

\ \

\ Hirabayashi S, Bhagat S, Matsuki Y, Takegami Y, Uehata T, Kanemaru A, Itoh M, Shirakawa K, Takaori-\ Kondo A, Takeuchi O et al.\ \ NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements.\ Nat Genet. 2019 Sep;51(9):1369-1379.\ PMID: 31477927\

\ \

\ Hon CC, Ramilowski JA, Harshbarger J, Bertin N, Rackham OJ, Gough J, Denisenko E, Schmeier S,\ Poulsen TM, Severin J et al.\ \ An atlas of human long non-coding RNAs with accurate 5' ends.\ Nature. 2017 Mar 9;543(7644):199-204.\ PMID: 28241135; PMC: PMC6857182\

\ \ \

\ Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\ N, Daub CO et al.\ \ Unamplified cap analysis of gene expression on a single-molecule sequencer.\ Genome Res. 2011 Jul;21(7):1150-9.\ PMID: 21596820; PMC: PMC3129257\

\ \

\ Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\ Ishikawa-Kato S et al.\ \ Gateways to the FANTOM5 promoter level mammalian expression atlas.\ Genome Biol. 2015 Jan 5;16(1):22.\ PMID: 25723102; PMC: PMC4310165\

\ regulation 1 bigDataUrl /gbdb/hg19/fantom5/hg19_enhancer_promoter_correlations_distances_cell_type.bb\ dataVersion FANTOM5 phase2.5\ html fantom5.html\ longLabel FANTOM5: Enhancer - promoter correlations distances cell type\ parent fantom5\ priority 1.11\ shortLabel Enhancer - promoter correlations distances cell type\ subGroups group=enhancer\ track enhancer_promoter_correlations_distances_cell_type\ type bigBed 12 .\ visibility squish\ enhancer_promoter_correlations_distances_organ Enhancer - promoter correlations distances organ bigBed 12 . FANTOM5: Enhancer - promoter correlations distances organ 0 1.12 0 0 0 127 127 127 0 0 0

Description

\

\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\

\ \

Display Conventions and Configuration

\

\ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

\ \

Methods

\

Protocol

\

\ Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE\ (Kanamori-Katyama et al. 2011).\

    \
  • hCAGE
    • \
  • LQhCAGE
    • \
\

\

Samples

\

\ Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\

    \
  • Primary cell
    • \
  • Tissue
    • \
  • Cell Line
    • \
  • Time course
    • \
  • Fractionation
    • \
\

\

TSS peaks and enhancers

\

\ TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They \ are named as "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or\ "p@CHROM:START..END,STRAND" otherwise. The CAGE data is also used to produce an atlas of active, in\ vivo-transcribed enhancers (Andersson et al. 2014). The summary tracks consist of the TSS (CAGE)\ peaks, and summary profiles of TSS activities (total and maximum values). The summary track consists of the\ following tracks.\

    \
  • TSS (CAGE) peaks\
      \
    • the robust peaks
      • \
    \
  • Enhancers
    • \ \
  • TSS summary profiles\
      \
    • Total counts and TPM (tags per million) in all the samples
      • \
    • Maximum counts and TPM among the samples
      • \
    \
    • \
\ \

TSS activity

\

\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag\ starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read\ counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as\ TPM (tags per million).\

\ \
\
Categories of individual samples
\
- Cell Line hCAGE
\
- Cell Line LQhCAGE
\
- fractionation hCAGE
\
- Primary cell hCAGE
\
- Primary cell LQhCAGE
\
- Time course hCAGE
\
- Tissue hCAGE
\
\ \

FANTOM-NET enhancers

\

\ A set of enhancers consist of the ones identified by Andersson et al. 2014 and the ones by Hirabayashi\ et al. 2019

\ \

FANTOM CAT

\

\ FANTOM CAGE associated transcriptome (FANTOM CAT) is a meta-assembly where FANTOM5 CAGE datasets\ were integrated with transcript models from diverse sources. Transcription Initiation Evidence Score\ (TIEScore) is a custom metric that evaluates the properties of a pair of CAGE cluster and transcript\ model to quantify the likelihood that the corresponding CAGE transcription start site (TSS) is\ genuine. TIEScore was first applied to each of the five transcript model collections separately\ and then merged into a non-redundant transcript set. Specifically, the transcript models from\ GENCODEv19 were used as the initial reference to sequentially overlay onto them the transcripts\ from the other four collections, in sequence of Human BodyMap 2.0, miTranscriptome, ENCODE, and\ FANTOM5 RNA-seq assembly. For more details, please refer to Hon et al. 2017.\

\ \

Data Access

\

\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.

\ \

Credits

\

\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.

\ \

References

\

\ Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C,\ Suzuki T et al.\ \ An atlas of active enhancers across human cell types and tissues.\ Nature. 2014 Mar 27;507(7493):455-461.\ PMID: 24670763; PMC: PMC5215096\

\ \

\ FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\ Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\ \ A promoter-level mammalian expression atlas.\ Nature. 2014 Mar 27;507(7493):462-70.\ PMID: 24670764; PMC: PMC4529748\

\ \

\ Hirabayashi S, Bhagat S, Matsuki Y, Takegami Y, Uehata T, Kanemaru A, Itoh M, Shirakawa K, Takaori-\ Kondo A, Takeuchi O et al.\ \ NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements.\ Nat Genet. 2019 Sep;51(9):1369-1379.\ PMID: 31477927\

\ \

\ Hon CC, Ramilowski JA, Harshbarger J, Bertin N, Rackham OJ, Gough J, Denisenko E, Schmeier S,\ Poulsen TM, Severin J et al.\ \ An atlas of human long non-coding RNAs with accurate 5' ends.\ Nature. 2017 Mar 9;543(7644):199-204.\ PMID: 28241135; PMC: PMC6857182\

\ \ \

\ Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\ N, Daub CO et al.\ \ Unamplified cap analysis of gene expression on a single-molecule sequencer.\ Genome Res. 2011 Jul;21(7):1150-9.\ PMID: 21596820; PMC: PMC3129257\

\ \

\ Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\ Ishikawa-Kato S et al.\ \ Gateways to the FANTOM5 promoter level mammalian expression atlas.\ Genome Biol. 2015 Jan 5;16(1):22.\ PMID: 25723102; PMC: PMC4310165\

\ regulation 1 bigDataUrl /gbdb/hg19/fantom5/hg19_enhancer_promoter_correlations_distances_organ.bb\ dataVersion FANTOM5 phase2.5\ html fantom5.html\ longLabel FANTOM5: Enhancer - promoter correlations distances organ\ parent fantom5\ priority 1.12\ shortLabel Enhancer - promoter correlations distances organ\ subGroups group=enhancer\ track enhancer_promoter_correlations_distances_organ\ type bigBed 12 .\ visibility hide\ wgEncodeRegMarkH3k4me1 Layered H3K4Me1 bigWig 0 10000 H3K4Me1 Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE 0 1.2 0 0 0 127 127 127 0 0 0

Description

\

\ Chemical modifications (e.g. methylation and acylation) to the histone proteins\ present in chromatin influence gene expression by changing how\ accessible the chromatin is to transcription. A specific modification of\ a specific histone protein is called a histone mark.\ This track shows the levels of enrichment of the H3K4Me1 histone mark across the genome as determined by a\ ChIP-seq assay. The H3K4me1 histone mark is the mono-methylation of lysine 4\ of the H3 histone protein, and it is associated with enhancers and with DNA regions downstream of transcription\ starts. Additional histone marks and other chromatin associated ChIP-seq data is available at\ the Broad Histone page.\

\

Display conventions

\

By default this track uses a transparent overlay method of displaying data from a number of cell \ lines in the same vertical space. Each of the cell lines in this track is associated with a particular\ color, and these cell line colors are consistent across all tracks that\ are part of the ENCODE Regulation supertrack.\ These colors are relatively light and saturated so as to work best with the transparent overlay. \ Unfortunately, outside the ENCODE Regulation tracks, older cell line\ color conventions are used that don't match the cell line colors used in\ the ENCODE Regulation tracks. The older colors were not used in the\ ENCODE Regulation tracks because they were too dark for the transparent\ overlay.\

\

Credits

\

\ This track shows data from the Bernstein Lab at the Broad Institute. The Bernstein lab is part of \ the ENCODE consortium. \

\

Data Release Policy

\

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

\ \ regulation 1 aggregate transparentOverlay\ allButtonPair on\ container multiWig\ dragAndDrop subtracks\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE\ maxHeightPixels 100:30:11\ noInherit on\ priority 1.2\ shortLabel Layered H3K4Me1\ showSubtrackColorOnUi on\ superTrack wgEncodeReg hide\ track wgEncodeRegMarkH3k4me1\ type bigWig 0 10000\ viewLimits 0:50\ visibility hide\ robustPeaks TSS peaks bigBed 8 + FANTOM5: DPI peak, robust set 1 1.2 0 0 0 127 127 127 0 0 0

Description

\

\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\

\ \

Display Conventions and Configuration

\

\ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

\ \

Methods

\

Protocol

\

\ Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE\ (Kanamori-Katyama et al. 2011).\

    \
  • hCAGE
    • \
  • LQhCAGE
    • \
\

\

Samples

\

\ Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\

    \
  • Primary cell
    • \
  • Tissue
    • \
  • Cell Line
    • \
  • Time course
    • \
  • Fractionation
    • \
\

\

TSS peaks and enhancers

\

\ TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They \ are named as "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or\ "p@CHROM:START..END,STRAND" otherwise. The CAGE data is also used to produce an atlas of active, in\ vivo-transcribed enhancers (Andersson et al. 2014). The summary tracks consist of the TSS (CAGE)\ peaks, and summary profiles of TSS activities (total and maximum values). The summary track consists of the\ following tracks.\

    \
  • TSS (CAGE) peaks\
      \
    • the robust peaks
      • \
    \
  • Enhancers
    • \ \
  • TSS summary profiles\
      \
    • Total counts and TPM (tags per million) in all the samples
      • \
    • Maximum counts and TPM among the samples
      • \
    \
    • \
\ \

TSS activity

\

\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag\ starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read\ counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as\ TPM (tags per million).\

\ \
\
Categories of individual samples
\
- Cell Line hCAGE
\
- Cell Line LQhCAGE
\
- fractionation hCAGE
\
- Primary cell hCAGE
\
- Primary cell LQhCAGE
\
- Time course hCAGE
\
- Tissue hCAGE
\
\ \

FANTOM-NET enhancers

\

\ A set of enhancers consist of the ones identified by Andersson et al. 2014 and the ones by Hirabayashi\ et al. 2019

\ \

FANTOM CAT

\

\ FANTOM CAGE associated transcriptome (FANTOM CAT) is a meta-assembly where FANTOM5 CAGE datasets\ were integrated with transcript models from diverse sources. Transcription Initiation Evidence Score\ (TIEScore) is a custom metric that evaluates the properties of a pair of CAGE cluster and transcript\ model to quantify the likelihood that the corresponding CAGE transcription start site (TSS) is\ genuine. TIEScore was first applied to each of the five transcript model collections separately\ and then merged into a non-redundant transcript set. Specifically, the transcript models from\ GENCODEv19 were used as the initial reference to sequentially overlay onto them the transcripts\ from the other four collections, in sequence of Human BodyMap 2.0, miTranscriptome, ENCODE, and\ FANTOM5 RNA-seq assembly. For more details, please refer to Hon et al. 2017.\

\ \

Data Access

\

\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.

\ \

Credits

\

\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.

\ \

References

\

\ Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C,\ Suzuki T et al.\ \ An atlas of active enhancers across human cell types and tissues.\ Nature. 2014 Mar 27;507(7493):455-461.\ PMID: 24670763; PMC: PMC5215096\

\ \

\ FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\ Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\ \ A promoter-level mammalian expression atlas.\ Nature. 2014 Mar 27;507(7493):462-70.\ PMID: 24670764; PMC: PMC4529748\

\ \

\ Hirabayashi S, Bhagat S, Matsuki Y, Takegami Y, Uehata T, Kanemaru A, Itoh M, Shirakawa K, Takaori-\ Kondo A, Takeuchi O et al.\ \ NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements.\ Nat Genet. 2019 Sep;51(9):1369-1379.\ PMID: 31477927\

\ \

\ Hon CC, Ramilowski JA, Harshbarger J, Bertin N, Rackham OJ, Gough J, Denisenko E, Schmeier S,\ Poulsen TM, Severin J et al.\ \ An atlas of human long non-coding RNAs with accurate 5' ends.\ Nature. 2017 Mar 9;543(7644):199-204.\ PMID: 28241135; PMC: PMC6857182\

\ \ \

\ Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\ N, Daub CO et al.\ \ Unamplified cap analysis of gene expression on a single-molecule sequencer.\ Genome Res. 2011 Jul;21(7):1150-9.\ PMID: 21596820; PMC: PMC3129257\

\ \

\ Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\ Ishikawa-Kato S et al.\ \ Gateways to the FANTOM5 promoter level mammalian expression atlas.\ Genome Biol. 2015 Jan 5;16(1):22.\ PMID: 25723102; PMC: PMC4310165\

\ regulation 1 bigDataUrl /gbdb/hg19/fantom5/hg19.cage_peak.bb\ boxedCfg on\ colorByStrand 255,0,0 0,0,255\ dataVersion FANTOM5 phase2.5\ exonArrows on\ html fantom5.html\ itemRgb on\ longLabel FANTOM5: DPI peak, robust set\ priority 1.2\ searchIndex name\ searchTrix hg19.cage_peak.bb.ix\ shortLabel TSS peaks\ showSubtrackColorOnUi on\ subGroups group=peaks\ superTrack fantom5 dense\ track robustPeaks\ type bigBed 8 +\ visibility dense\ wgEncodeRegMarkH3k4me3 Layered H3K4Me3 bigWig 0 10000 H3K4Me3 Mark (Often Found Near Promoters) on 7 cell lines from ENCODE 0 1.3 0 0 0 127 127 127 0 0 0

Description

\

\ Chemical modifications (e.g. methylation and acylation) to the histone proteins\ present in chromatin influence gene expression by changing how\ accessible the chromatin is to transcription. A specific modification of\ a specific histone protein is called a histone mark.\ This track shows the levels of enrichment of the H3K4Me3 histone mark across the genome as determined by a\ ChIP-seq assay. The H3K4Me3 histone mark is the tri-methylation of lysine 4 of the H3 histone protein,\ and it is associated with promoters that are active or poised to be\ activated. Additional histone marks and other chromatin associated ChIP-seq data is available at \ the Broad Histone page. \

\

Display conventions

\

By default this track uses a transparent overlay method of displaying data from a number of cell \ lines in the same vertical space. Each of the cell lines in this track is associated with a particular\ color, and these cell line colors are consistent across all tracks that\ are part of the ENCODE Regulation supertrack.\ These colors are relatively light and saturated so as to work best with the transparent overlay. \ Unfortunately, outside the ENCODE Regulation tracks, older cell line\ color conventions are used that don't match the cell line colors used in\ the ENCODE Regulation tracks. The older colors were not used in the\ ENCODE Regulation tracks because they were too dark for the transparent\ overlay.\

\

Credits

\

\ This track shows data from the Bernstein Lab at the Broad Institute. The Bernstein lab is part of \ the ENCODE consortium. \

\

Data Release Policy

\

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

\ \ regulation 1 aggregate transparentOverlay\ allButtonPair on\ container multiWig\ dragAndDrop subtracks\ longLabel H3K4Me3 Mark (Often Found Near Promoters) on 7 cell lines from ENCODE\ maxHeightPixels 100:30:11\ noInherit on\ priority 1.3\ shortLabel Layered H3K4Me3\ showSubtrackColorOnUi on\ superTrack wgEncodeReg hide\ track wgEncodeRegMarkH3k4me3\ type bigWig 0 10000\ viewLimits 0:150\ visibility hide\ Total_counts_multiwig Total counts of CAGE reads bigWig 0 100 FANTOM5: Total counts of CAGE reads 2 1.3 0 0 0 127 127 127 0 0 0

Description

\

\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\

\ \

Display Conventions and Configuration

\

\ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

\ \

Methods

\

Protocol

\

\ Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE\ (Kanamori-Katyama et al. 2011).\

    \
  • hCAGE
    • \
  • LQhCAGE
    • \
\

\

Samples

\

\ Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\

    \
  • Primary cell
    • \
  • Tissue
    • \
  • Cell Line
    • \
  • Time course
    • \
  • Fractionation
    • \
\

\

TSS peaks and enhancers

\

\ TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They \ are named as "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or\ "p@CHROM:START..END,STRAND" otherwise. The CAGE data is also used to produce an atlas of active, in\ vivo-transcribed enhancers (Andersson et al. 2014). The summary tracks consist of the TSS (CAGE)\ peaks, and summary profiles of TSS activities (total and maximum values). The summary track consists of the\ following tracks.\

    \
  • TSS (CAGE) peaks\
      \
    • the robust peaks
      • \
    \
  • Enhancers
    • \ \
  • TSS summary profiles\
      \
    • Total counts and TPM (tags per million) in all the samples
      • \
    • Maximum counts and TPM among the samples
      • \
    \
    • \
\ \

TSS activity

\

\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag\ starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read\ counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as\ TPM (tags per million).\

\ \
\
Categories of individual samples
\
- Cell Line hCAGE
\
- Cell Line LQhCAGE
\
- fractionation hCAGE
\
- Primary cell hCAGE
\
- Primary cell LQhCAGE
\
- Time course hCAGE
\
- Tissue hCAGE
\
\ \

FANTOM-NET enhancers

\

\ A set of enhancers consist of the ones identified by Andersson et al. 2014 and the ones by Hirabayashi\ et al. 2019

\ \

FANTOM CAT

\

\ FANTOM CAGE associated transcriptome (FANTOM CAT) is a meta-assembly where FANTOM5 CAGE datasets\ were integrated with transcript models from diverse sources. Transcription Initiation Evidence Score\ (TIEScore) is a custom metric that evaluates the properties of a pair of CAGE cluster and transcript\ model to quantify the likelihood that the corresponding CAGE transcription start site (TSS) is\ genuine. TIEScore was first applied to each of the five transcript model collections separately\ and then merged into a non-redundant transcript set. Specifically, the transcript models from\ GENCODEv19 were used as the initial reference to sequentially overlay onto them the transcripts\ from the other four collections, in sequence of Human BodyMap 2.0, miTranscriptome, ENCODE, and\ FANTOM5 RNA-seq assembly. For more details, please refer to Hon et al. 2017.\

\ \

Data Access

\

\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.

\ \

Credits

\

\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.

\ \

References

\

\ Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C,\ Suzuki T et al.\ \ An atlas of active enhancers across human cell types and tissues.\ Nature. 2014 Mar 27;507(7493):455-461.\ PMID: 24670763; PMC: PMC5215096\

\ \

\ FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\ Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\ \ A promoter-level mammalian expression atlas.\ Nature. 2014 Mar 27;507(7493):462-70.\ PMID: 24670764; PMC: PMC4529748\

\ \

\ Hirabayashi S, Bhagat S, Matsuki Y, Takegami Y, Uehata T, Kanemaru A, Itoh M, Shirakawa K, Takaori-\ Kondo A, Takeuchi O et al.\ \ NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements.\ Nat Genet. 2019 Sep;51(9):1369-1379.\ PMID: 31477927\

\ \

\ Hon CC, Ramilowski JA, Harshbarger J, Bertin N, Rackham OJ, Gough J, Denisenko E, Schmeier S,\ Poulsen TM, Severin J et al.\ \ An atlas of human long non-coding RNAs with accurate 5' ends.\ Nature. 2017 Mar 9;543(7644):199-204.\ PMID: 28241135; PMC: PMC6857182\

\ \ \

\ Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\ N, Daub CO et al.\ \ Unamplified cap analysis of gene expression on a single-molecule sequencer.\ Genome Res. 2011 Jul;21(7):1150-9.\ PMID: 21596820; PMC: PMC3129257\

\ \

\ Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\ Ishikawa-Kato S et al.\ \ Gateways to the FANTOM5 promoter level mammalian expression atlas.\ Genome Biol. 2015 Jan 5;16(1):22.\ PMID: 25723102; PMC: PMC4310165\

\ regulation 0 aggregate transparentOverlay\ autoScale off\ configurable on\ container multiWig\ dataVersion FANTOM5 phase2.5\ dragAndDrop subTracks\ html fantom5.html\ longLabel FANTOM5: Total counts of CAGE reads\ maxHeightPixels 64:64:11\ priority 1.3\ shortLabel Total counts of CAGE reads\ showSubtrackColorOnUi on\ subGroups group=counts\ superTrack fantom5 full\ track Total_counts_multiwig\ type bigWig 0 100\ viewLimits 0:100\ visibility full\ wgEncodeRegMarkH3k27ac Layered H3K27Ac bigWig 0 10000 H3K27Ac Mark (Often Found Near Active Regulatory Elements) on 7 cell lines from ENCODE 2 1.4 0 0 0 127 127 127 0 0 0

Description

\

\ Chemical modifications (e.g. methylation and acylation) to the histone proteins\ present in chromatin influence gene expression by changing how\ accessible the chromatin is to transcription. A specific modification of\ a specific histone protein is called a histone mark.\ This track shows the levels of enrichment of the H3K27Ac histone mark across the genome as determined by a\ ChIP-seq assay. The H3K27Ac histone mark is the acetylation of lysine 27 of the H3 histone\ protein, and it is thought to enhance transcription possibly by blocking the\ spread of the repressive histone mark H3K27Me3. Additional histone marks and other chromatin \ associated ChIP-seq data is available at the \ Broad Histone page. \

\

Display conventions

\

By default this track uses a transparent overlay method of displaying data from a number of cell \ lines in the same vertical space. Each of the cell lines in this track is associated with a particular\ color, and these cell line colors are consistent across all tracks that\ are part of the ENCODE Regulation supertrack.\ These colors are relatively light and saturated so as to work best with the transparent overlay. \ Unfortunately, outside the ENCODE Regulation tracks, older cell line\ color conventions are used that don't match the cell line colors used in\ the ENCODE Regulation tracks. The older colors were not used in the\ ENCODE Regulation tracks because they were too dark for the transparent\ overlay.\

\

Credits

\

\ This track shows data from the Bernstein Lab at the Broad Institute. The Bernstein lab is part of \ the ENCODE consortium. \

\

Data Release Policy

\

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

\ \ regulation 1 aggregate transparentOverlay\ allButtonPair on\ container multiWig\ dragAndDrop subtracks\ longLabel H3K27Ac Mark (Often Found Near Active Regulatory Elements) on 7 cell lines from ENCODE\ maxHeightPixels 100:30:11\ noInherit on\ priority 1.4\ shortLabel Layered H3K27Ac\ showSubtrackColorOnUi on\ superTrack wgEncodeReg full\ track wgEncodeRegMarkH3k27ac\ type bigWig 0 10000\ viewLimits 0:100\ visibility full\ Max_counts_multiwig Max counts of CAGE reads bigWig 0 100 FANTOM5: Max counts of CAGE reads 2 1.4 0 0 0 127 127 127 0 0 0

Description

\

\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\

\ \

Display Conventions and Configuration

\

\ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

\ \

Methods

\

Protocol

\

\ Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE\ (Kanamori-Katyama et al. 2011).\

    \
  • hCAGE
    • \
  • LQhCAGE
    • \
\

\

Samples

\

\ Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\

    \
  • Primary cell
    • \
  • Tissue
    • \
  • Cell Line
    • \
  • Time course
    • \
  • Fractionation
    • \
\

\

TSS peaks and enhancers

\

\ TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They \ are named as "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or\ "p@CHROM:START..END,STRAND" otherwise. The CAGE data is also used to produce an atlas of active, in\ vivo-transcribed enhancers (Andersson et al. 2014). The summary tracks consist of the TSS (CAGE)\ peaks, and summary profiles of TSS activities (total and maximum values). The summary track consists of the\ following tracks.\

    \
  • TSS (CAGE) peaks\
      \
    • the robust peaks
      • \
    \
  • Enhancers
    • \ \
  • TSS summary profiles\
      \
    • Total counts and TPM (tags per million) in all the samples
      • \
    • Maximum counts and TPM among the samples
      • \
    \
    • \
\ \

TSS activity

\

\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag\ starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read\ counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as\ TPM (tags per million).\

\ \
\
Categories of individual samples
\
- Cell Line hCAGE
\
- Cell Line LQhCAGE
\
- fractionation hCAGE
\
- Primary cell hCAGE
\
- Primary cell LQhCAGE
\
- Time course hCAGE
\
- Tissue hCAGE
\
\ \

FANTOM-NET enhancers

\

\ A set of enhancers consist of the ones identified by Andersson et al. 2014 and the ones by Hirabayashi\ et al. 2019

\ \

FANTOM CAT

\

\ FANTOM CAGE associated transcriptome (FANTOM CAT) is a meta-assembly where FANTOM5 CAGE datasets\ were integrated with transcript models from diverse sources. Transcription Initiation Evidence Score\ (TIEScore) is a custom metric that evaluates the properties of a pair of CAGE cluster and transcript\ model to quantify the likelihood that the corresponding CAGE transcription start site (TSS) is\ genuine. TIEScore was first applied to each of the five transcript model collections separately\ and then merged into a non-redundant transcript set. Specifically, the transcript models from\ GENCODEv19 were used as the initial reference to sequentially overlay onto them the transcripts\ from the other four collections, in sequence of Human BodyMap 2.0, miTranscriptome, ENCODE, and\ FANTOM5 RNA-seq assembly. For more details, please refer to Hon et al. 2017.\

\ \

Data Access

\

\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.

\ \

Credits

\

\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.

\ \

References

\

\ Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C,\ Suzuki T et al.\ \ An atlas of active enhancers across human cell types and tissues.\ Nature. 2014 Mar 27;507(7493):455-461.\ PMID: 24670763; PMC: PMC5215096\

\ \

\ FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\ Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\ \ A promoter-level mammalian expression atlas.\ Nature. 2014 Mar 27;507(7493):462-70.\ PMID: 24670764; PMC: PMC4529748\

\ \

\ Hirabayashi S, Bhagat S, Matsuki Y, Takegami Y, Uehata T, Kanemaru A, Itoh M, Shirakawa K, Takaori-\ Kondo A, Takeuchi O et al.\ \ NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements.\ Nat Genet. 2019 Sep;51(9):1369-1379.\ PMID: 31477927\

\ \

\ Hon CC, Ramilowski JA, Harshbarger J, Bertin N, Rackham OJ, Gough J, Denisenko E, Schmeier S,\ Poulsen TM, Severin J et al.\ \ An atlas of human long non-coding RNAs with accurate 5' ends.\ Nature. 2017 Mar 9;543(7644):199-204.\ PMID: 28241135; PMC: PMC6857182\

\ \ \

\ Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\ N, Daub CO et al.\ \ Unamplified cap analysis of gene expression on a single-molecule sequencer.\ Genome Res. 2011 Jul;21(7):1150-9.\ PMID: 21596820; PMC: PMC3129257\

\ \

\ Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\ Ishikawa-Kato S et al.\ \ Gateways to the FANTOM5 promoter level mammalian expression atlas.\ Genome Biol. 2015 Jan 5;16(1):22.\ PMID: 25723102; PMC: PMC4310165\

\ regulation 0 aggregate transparentOverlay\ autoScale off\ configurable on\ container multiWig\ dataVersion FANTOM5 phase2.5\ dragAndDrop subTracks\ html fantom5.html\ longLabel FANTOM5: Max counts of CAGE reads\ maxHeightPixels 64:64:11\ priority 1.4\ shortLabel Max counts of CAGE reads\ showSubtrackColorOnUi on\ subGroups group=counts\ superTrack fantom5 full\ track Max_counts_multiwig\ type bigWig 0 100\ viewLimits 0:100\ visibility full\ affyExonArray Affy Exon Array bed 12 Affymetrix Human Exon Array Probes and Probesets 3 1.5 0 0 0 127 127 127 0 0 0

Methods

\

\ \ This track shows the genomic locations of the probesets and probes\ from the Affymetrix Exon array. This array was designed to\ interrogate every known and putative exon in the human genome. For\ the design of this array, Affymetrix compiled evidence of expression\ from sources including well-annotated genes such as RefSeq, genomic\ alignments of mRNA and EST sequences, gene predictions, exon\ predictions, and regions that are syntenic to conserved regions in\ related species. Using this evidence, Affymetrix designed a probeset\ for each known or putative exon. While some of these regions might\ never be transcribed, the goal is to obtain a comprehensive\ measurement of transcription in the human genome. In most cases, this\ array contains one probeset per exon. However, whenever this\ design-time evidence suggested that some exon had alternative splice\ sites, the exon was subdivided into two or more regions, and one\ probeset was designed for each region (where possible). The array\ contains no probesets for exons smaller than 25 nucleotides.\

\ The exon array supports both gene-level and exon-level expression\ measurement. When the probesets for a single gene are analyzed\ together, it yields results for overall gene expression. When the\ probeset of each exon is contrasted against other exons in the same\ gene, it yields results for alternative splicing.\

\ The probes and probesets on the exon array are divided into five levels\ or classes, depending mostly on the degree of design-time evidence.\

    \ \
  • Core probes and probesets are supported by the most\ reliable evidence from RefSeq and full-length mRNA GenBank records\ containing complete CDS information.\ \
  • Extended probes and probesets are supported by other cDNA evidence\ beyond what is used to support core probe sets. Extended evidence\ comes from other Genbank mRNAs not annotated as full-length, EST\ sequences, ENSEMBL gene collections, syntenically mapped mRNA from\ Mouse, Rat, or Human, mitoMap mitochondrial genes, microRNA registry\ genes, vegaGene, and vegaPseudoGene records.\ \
  • Full probes and probesets are supported by computational\ gene prediction evidence only. They are supported by gene and exon\ prediction algorithms including GeneID, GenScan, GenScanSubOptimal,\ exoniphy, RNAGene, sgpGene and Twinscan.\ \
  • Free probes and probesets are supported by annotations\ which were merged such that no single annotation (or evidence)\ contains the probe setprobe sets that are supported by annotations\ which were merged such that no single annotation (or evidence)\ contains the probe set.\ \
  • Ambiguous probes and probesets cannot be assigned unambiguously to any\ single gene. \
\ All probes and probesets have a two-part label, indicating the transcript \ cluster ID and probeset ID. The transcript cluster ID is a numeric \ representation of the gene interrogated by the probeset in question. All probes\ are labeled with the transcript cluster ID and probeset ID of whatever probeset\ they belong to.\ \ \

Credits

\

\ The data for this track were provided by Affymetrix.\ Further information on the Human Exon Array is available here.\

\ expression 1 color 0,0,0\ compositeTrack on\ dimensions dimensionX=level dimensionY=view\ dragAndDrop subTracks\ group expression\ html affyExonArray\ longLabel Affymetrix Human Exon Array Probes and Probesets\ noInherit on\ parent affyArchive\ priority 1.5\ shortLabel Affy Exon Array\ sortOrder level=+ view=+\ subGroup1 view Views v1Probeset=Probeset v2Probe=Probe\ subGroup2 level Level L1Core=Core L2Extended=Extended L3Full=Full L4Free=Free L5Ambiguous=Ambiguous\ track affyExonArray\ type bed 12\ visibility pack\ affyExonProbe Affy Exon Array bed 12 Affymetrix Human Exon Array Probes and Probesets 1 1.5 0 0 0 127 127 127 0 0 0 expression 1 longLabel Affymetrix Human Exon Array Probes and Probesets\ parent affyExonArray\ shortLabel Affy Exon Array\ track affyExonProbe\ view v2Probe\ visibility dense\ affyExonProbeset Affy Exon Array bed 12 Affymetrix Human Exon Array Probes and Probesets 1 1.5 0 0 0 127 127 127 0 0 0 expression 1 longLabel Affymetrix Human Exon Array Probes and Probesets\ parent affyExonArray\ shortLabel Affy Exon Array\ track affyExonProbeset\ view v1Probeset\ visibility dense\ FANTOM_CAT FANTOM CAT bigBed 12 + FANTOM5: atlas of human long non-coding RNAs with accurate 5' ends 0 1.5 0 0 0 127 127 127 0 0 0

Description

\

\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\

\ \

Display Conventions and Configuration

\

\ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

\ \

Methods

\

Protocol

\

\ Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE\ (Kanamori-Katyama et al. 2011).\

    \
  • hCAGE
    • \
  • LQhCAGE
    • \
\

\

Samples

\

\ Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\

    \
  • Primary cell
    • \
  • Tissue
    • \
  • Cell Line
    • \
  • Time course
    • \
  • Fractionation
    • \
\

\

TSS peaks and enhancers

\

\ TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They \ are named as "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or\ "p@CHROM:START..END,STRAND" otherwise. The CAGE data is also used to produce an atlas of active, in\ vivo-transcribed enhancers (Andersson et al. 2014). The summary tracks consist of the TSS (CAGE)\ peaks, and summary profiles of TSS activities (total and maximum values). The summary track consists of the\ following tracks.\

    \
  • TSS (CAGE) peaks\
      \
    • the robust peaks
      • \
    \
  • Enhancers
    • \ \
  • TSS summary profiles\
      \
    • Total counts and TPM (tags per million) in all the samples
      • \
    • Maximum counts and TPM among the samples
      • \
    \
    • \
\ \

TSS activity

\

\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag\ starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read\ counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as\ TPM (tags per million).\

\ \
\
Categories of individual samples
\
- Cell Line hCAGE
\
- Cell Line LQhCAGE
\
- fractionation hCAGE
\
- Primary cell hCAGE
\
- Primary cell LQhCAGE
\
- Time course hCAGE
\
- Tissue hCAGE
\
\ \

FANTOM-NET enhancers

\

\ A set of enhancers consist of the ones identified by Andersson et al. 2014 and the ones by Hirabayashi\ et al. 2019

\ \

FANTOM CAT

\

\ FANTOM CAGE associated transcriptome (FANTOM CAT) is a meta-assembly where FANTOM5 CAGE datasets\ were integrated with transcript models from diverse sources. Transcription Initiation Evidence Score\ (TIEScore) is a custom metric that evaluates the properties of a pair of CAGE cluster and transcript\ model to quantify the likelihood that the corresponding CAGE transcription start site (TSS) is\ genuine. TIEScore was first applied to each of the five transcript model collections separately\ and then merged into a non-redundant transcript set. Specifically, the transcript models from\ GENCODEv19 were used as the initial reference to sequentially overlay onto them the transcripts\ from the other four collections, in sequence of Human BodyMap 2.0, miTranscriptome, ENCODE, and\ FANTOM5 RNA-seq assembly. For more details, please refer to Hon et al. 2017.\

\ \

Data Access

\

\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.

\ \

Credits

\

\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.

\ \

References

\

\ Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C,\ Suzuki T et al.\ \ An atlas of active enhancers across human cell types and tissues.\ Nature. 2014 Mar 27;507(7493):455-461.\ PMID: 24670763; PMC: PMC5215096\

\ \

\ FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\ Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\ \ A promoter-level mammalian expression atlas.\ Nature. 2014 Mar 27;507(7493):462-70.\ PMID: 24670764; PMC: PMC4529748\

\ \

\ Hirabayashi S, Bhagat S, Matsuki Y, Takegami Y, Uehata T, Kanemaru A, Itoh M, Shirakawa K, Takaori-\ Kondo A, Takeuchi O et al.\ \ NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements.\ Nat Genet. 2019 Sep;51(9):1369-1379.\ PMID: 31477927\

\ \

\ Hon CC, Ramilowski JA, Harshbarger J, Bertin N, Rackham OJ, Gough J, Denisenko E, Schmeier S,\ Poulsen TM, Severin J et al.\ \ An atlas of human long non-coding RNAs with accurate 5' ends.\ Nature. 2017 Mar 9;543(7644):199-204.\ PMID: 28241135; PMC: PMC6857182\

\ \ \

\ Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\ N, Daub CO et al.\ \ Unamplified cap analysis of gene expression on a single-molecule sequencer.\ Genome Res. 2011 Jul;21(7):1150-9.\ PMID: 21596820; PMC: PMC3129257\

\ \

\ Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\ Ishikawa-Kato S et al.\ \ Gateways to the FANTOM5 promoter level mammalian expression atlas.\ Genome Biol. 2015 Jan 5;16(1):22.\ PMID: 25723102; PMC: PMC4310165\

\ regulation 1 compositeTrack on\ html fantom5.html\ longLabel FANTOM5: atlas of human long non-coding RNAs with accurate 5' ends\ priority 1.5\ shortLabel FANTOM CAT\ superTrack fantom5 full\ track FANTOM_CAT\ type bigBed 12 +\ FANTOM_CATlv1 lv1 raw bigBed 12 + FANTOM CAT.lv1 raw 0 1.51 0 0 0 127 127 127 0 0 0 regulation 1 bigDataUrl /gbdb/hg19/fantom5/FANTOM_CAT.lv1_raw.bb\ colorByStrand 255,0,0 0,0,255\ itemRgb on\ longLabel FANTOM CAT.lv1 raw\ parent FANTOM_CAT\ priority 1.51\ shortLabel lv1 raw\ track FANTOM_CATlv1\ type bigBed 12 +\ visibility hide\ FANTOM_CATlv2 lv2 permissive bigBed 12 + FANTOM CAT.lv2 permissive 0 1.52 0 0 0 127 127 127 0 0 0 regulation 1 bigDataUrl /gbdb/hg19/fantom5/FANTOM_CAT.lv2_permissive.bb\ colorByStrand 255,0,0 0,0,255\ itemRgb on\ longLabel FANTOM CAT.lv2 permissive\ parent FANTOM_CAT\ priority 1.52\ shortLabel lv2 permissive\ track FANTOM_CATlv2\ type bigBed 12 +\ visibility hide\ FANTOM_CATlv3 lv3 robust bigBed 12 + FANTOM CAT.lv3 robust 0 1.53 0 0 0 127 127 127 0 0 0 regulation 1 bigDataUrl /gbdb/hg19/fantom5/FANTOM_CAT.lv3_robust.bb\ colorByStrand 255,0,0 0,0,255\ itemRgb on\ longLabel FANTOM CAT.lv3 robust\ parent FANTOM_CAT\ priority 1.53\ shortLabel lv3 robust\ track FANTOM_CATlv3\ type bigBed 12 +\ visibility hide\ FANTOM_CATlv4 lv4 stringent bigBed 12 + FANTOM CAT.lv4 stringent 4 1.54 0 0 0 127 127 127 0 0 0 regulation 1 bigDataUrl /gbdb/hg19/fantom5/FANTOM_CAT.lv4_stringent.bb\ colorByStrand 255,0,0 0,0,255\ itemRgb on\ longLabel FANTOM CAT.lv4 stringent\ parent FANTOM_CAT\ priority 1.54\ shortLabel lv4 stringent\ track FANTOM_CATlv4\ type bigBed 12 +\ visibility squish\ wgEncodeRegDnaseClustered DNase Clusters bed 5 . DNaseI Hypersensitivity Clusters in 125 cell types from ENCODE (V3) 0 1.6 0 0 0 127 127 127 1 0 0

Description

\

\ This track shows DNase hypersensitive areas assayed in a large collection of cell types \ by the \ ENCODE project. \ Regulatory regions in general, and promoters in particular, tend to be DNase-sensitive. \ Additional views of this data and additional documentation on the methods used\ to identify hypersensitive sites are available from the\ Uniform DNaseI HS page.\ The uniform peaks in that track are the basis for the clusters shown here, \ which combine data from the peaks of the different cell lines.

\ \

Display Conventions and Configuration

\

\ A gray box indicates the extent of the hypersensitive region. \ The darkness is proportional to the maximum signal strength observed in any cell line. \ The number to the left of the box shows how many cell lines are hypersensitive in the region. \ The track can be configured to restrict the display to elements above a specified score \ in the range 100-1000 (where score is based on signal strength).

\ \

Methods

\

\ Stringent (FDR 1% thresholded) peaks of DNaseI hypersensitivity from uniform processing \ by the ENCODE Analysis Working Group \ (Uniform DNaseI HS) \ were assigned normalized scores (by UCSC regClusterMakeTableOfTables) in the range 0-1000 based\ on the \ narrowPeak \ signalValue and then clustered on score (by UCSC regCluster) to generate singly-linked clusters. \ Low-scoring clusters (score <100) were then filtered out.

\ \

Release Notes

\ This is the third release of this track. \ It differs from the previous track as it includes clusters having only 1 cell type contributing to\ the cluster (previously excluded).\ The previous track is available on the UCSC preview browser as\ DNase Clusters V2.

\ \

Credits

\

\ This track shows data from the University of Washington and Duke ENCODE groups, \ with uniform processing by the ENCODE Analysis Working Group. \ The clustering was performed at UCSC.\ For additional credits and references, see the\ Uniform DNaseI HS page.

\ \

Data Release Policy

\

While primary ENCODE data is subject to a restriction period as described in the \ ENCODE data release policy, \ this restriction does not apply to the integrative analysis results. \ The data in this track are freely available.

\ regulation 1 controlledVocabulary encode/cv.ra cellType=cell treatment=treatment lab=lab\ html wgEncodeRegDnaseClusteredV3\ inputTableFieldDisplay cellType treatment lab\ inputTrackTable wgEncodeRegDnaseClusteredInputsV2\ longLabel DNaseI Hypersensitivity Clusters in 125 cell types from ENCODE (V3)\ priority 1.6\ scoreFilter 100\ scoreFilterLimits 100:1000\ shortLabel DNase Clusters\ sourceTable wgEncodeRegDnaseClusteredSources\ superTrack wgEncodeReg dense\ table wgEncodeRegDnaseClusteredV3\ track wgEncodeRegDnaseClustered\ type bed 5 .\ useScore 1\ visibility hide\ encRegTfbsClustered Txn Factr ChIP E3 factorSource Transcription Factor ChIP-seq Clusters (338 factors, 130 cell types) from ENCODE 3 0 1.6 0 0 0 127 127 127 1 0 0 http://www.factorbook.org/mediawiki/index.php/$$

Description

\

\ This track shows regions of transcription factor binding derived from a large collection\ of ChIP-seq experiments performed by the ENCODE project between February 2011 and November 2018,\ spanning the first production phase of ENCODE ("ENCODE 2") through the second full production\ phase ("ENCODE 3").\

\

\ Transcription factors (TFs) are proteins that bind to DNA and interact with RNA polymerases to\ regulate gene expression. Some TFs contain a DNA binding domain and can bind directly to \ specific short DNA sequences ('motifs');\ others bind to DNA indirectly through interactions with TFs containing a DNA binding domain.\ High-throughput antibody capture and sequencing methods (e.g. chromatin immunoprecipitation\ followed by sequencing, or 'ChIP-seq') can be used to identify regions of\ TF binding genome-wide. These regions are commonly called ChIP-seq peaks.

\

\ ENCODE TF ChIP-seq data were processed using the \ ENCODE Transcription Factor ChIP-seq Processing Pipeline to generate peaks of TF binding.\ Peaks from 1264 experiments (1256 in hg38) representing 338 transcription factors \ (340 in hg38) in 130 cell types (129 in hg38) are combined here into clusters to produce a \ summary display showing occupancy regions for each factor.\ The underlying ChIP-seq peak data are available from the\ ENCODE 3 TF ChIP Peaks tracks (\ hg19,\ hg38)

\ \

Display Conventions

\

\ A gray box encloses each peak cluster of transcription factor occupancy, with the\ darkness of the box being proportional to the maximum signal strength observed in any cell type\ contributing to the cluster. The HGNC gene name for the transcription factor is shown \ to the left of each cluster.

\

\ To the right of the cluster a configurable label can optionally display information about the\ cell types contributing to the cluster and how many cell types were assayed for the factor\ (count where detected / count where assayed).\ For brevity in the display, each cell type is abbreviated to a single letter.\ The darkness of the letter is proportional to the signal strength observed in the cell line. \ Abbreviations starting with capital letters designate\ ENCODE cell types initially identified for intensive study, \ while those starting with lowercase letters designate cell lines added later in the project.

\

\ Click on a peak cluster to see more information about the TF/cell assays contributing to the\ cluster and the cell line abbreviation table.\

\ \

Methods

\

\ Peaks of transcription factor occupancy ("optimal peak set") from ENCODE ChIP-seq datasets\ were clustered using the UCSC hgBedsToBedExps tool. \ Scores were assigned to peaks by multiplying the input signal values by a normalization\ factor calculated as the ratio of the maximum score value (1000) to the signal value at one\ standard deviation from the mean, with values exceeding 1000 capped at 1000. This has the\ effect of distributing scores up to mean plus one 1 standard deviation across the score range,\ but assigning all above to the maximum score.\ The cluster score is the highest score for any peak contributing to the cluster.

\ \

Data Access

\

\ The raw data for the ENCODE3 TF Clusters track can be accessed from the\ \ Table Browser or combined with other datasets through the \ Data Integrator. This data is stored internally as a BED5+3 MySQL table with additional \ metadata tables. For automated analysis and download, the \ encRegTfbsClusteredWithCells.hg38.bed.gz track data file can be downloaded from \ our \ downloads server, which has 5 fields of BED data followed by a comma-separated list of cell types. \ The data can also be queried using the \ JSON API or the\ Public SQL server.

\ \

Credits

\

\ Thanks to the ENCODE Consortium, the ENCODE ChIP-seq production laboratories, and the\ ENCODE Data Coordination Center for generating and processing the TF ChIP-seq datasets used here.\ The ENCODE accession numbers of the constituent datasets are available from the peak details page.\ Special thanks to Henry Pratt, Jill Moore, Michael Purcaro, and Zhiping Weng, PI, at the \ ENCODE Data Analysis Center\ (ZLab at UMass Medical Center) for providing the peak datasets, metadata,\ and guidance developing this track. Please check the\ ZLab ENCODE Public Hubs\ for the most updated data.\

\

\ The integrative view presented here was developed by Jim Kent at UCSC.

\ \

References

\ \

ENCODE Project Consortium.\ \ A user's guide to the encyclopedia of DNA elements (ENCODE).\ PLoS Biol. 2011 Apr;9(4):e1001046. PMID: 21526222; PMCID: PMC3079585\

\ \

ENCODE Project Consortium.\ \ An integrated encyclopedia of DNA elements in the human genome.\ Nature. 2012 Sep 6;489(7414):57-74. PMID: 22955616; PMCID: PMC3439153\

\

\ Sloan CA, Chan ET, Davidson JM, Malladi VS, Strattan JS, Hitz BC, Gabdank I, Narayanan AK, Ho M, Lee\ BT et al.\ \ ENCODE data at the ENCODE portal.\ Nucleic Acids Res. 2016 Jan 4;44(D1):D726-32.\ PMID: 26527727; PMC: PMC4702836\

\

\ Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J,\ Alexander R et al.\ \ Architecture of the human regulatory network derived from ENCODE data.\ Nature. 2012 Sep 6;489(7414):91-100.\ PMID: 22955619\

\

\ Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y\ et al.\ \ Sequence features and chromatin structure around the genomic regions bound by 119 human\ transcription factors.\ Genome Res. 2012 Sep;22(9):1798-812.\ PMID: 22955990; PMC: PMC3431495\

\

\ Wang J, Zhuang J, Iyer S, Lin XY, Greven MC, Kim BH, Moore J, Pierce BG, Dong X, Virgil D et\ al.\ \ Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE\ consortium.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D171-6.\ PMID: 23203885; PMC: PMC3531197\

\ \

Data Use Policy

\

Users may freely download, analyze and publish results based on any ENCODE data without \ restrictions.\ Researchers using unpublished ENCODE data are encouraged to contact the data producers to discuss possible coordinated publications; however, this is optional.

\ Users of ENCODE datasets are requested to cite the ENCODE Consortium and ENCODE\ production laboratory(s) that generated the datasets used, as described in\ Citing ENCODE.

\ regulation 1 dataVersion ENCODE 3 Nov 2018\ filterBy name:factor=AFF1,AGO1,AGO2,ARHGAP35,ARID1B,ARID2,ARID3A,ARNT,ASH1L,ASH2L,ATF2,ATF3,ATF4,ATF7,ATM,BACH1,BATF,BCL11A,BCL3,BCOR,BHLHE40,BMI1,BRCA1,BRD4,BRD9,C11orf30,CBFA2T2,CBFA2T3,CBFB,CBX1,CBX2,CBX3,CBX5,CBX8,CC2D1A,CCAR2,CDC5L,CEBPB,CHAMP1,CHD1,CHD4,CHD7,CLOCK,COPS2,CREB1,CREB3L1,CREBBP,CREM,CTBP1,CTCF,CUX1,DACH1,DEAF1,DNMT1,DPF2,E2F1,E2F4,E2F6,E2F7,E2F8,E4F1,EBF1,EED,EGR1,EHMT2,ELF1,ELF4,ELK1,EP300,EP400,ESR1,ESRRA,ETS1,ETV4,ETV6,EWSR1,EZH2,FIP1L1,FOS,FOSL1,FOSL2,FOXA1,FOXA2,FOXK2,FOXM1,FOXP1,FUS,GABPA,GABPB1,GATA1,GATA2,GATA3,GATA4,GATAD2A,GATAD2B,GMEB1,HCFC1,HDAC1,HDAC2,HDAC3,HDAC6,HES1,HMBOX1,HNF1A,HNF4A,HNF4G,HNRNPH1,HNRNPK,HNRNPL,HNRNPLL,HNRNPUL1,HSF1,IKZF1,IKZF2,IRF1,IRF2,IRF3,IRF4,IRF5,JUN,JUNB,JUND,KAT2B,KAT8,KDM1A,KDM4A,KDM4B,KDM5A,KDM5B,KLF16,KLF5,L3MBTL2,LCORL,LEF1,MAFF,MAFK,MAX,MBD2,MCM2,MCM3,MCM5,MCM7,MEF2A,MEF2B,MEF2C,MEIS2,MGA,MIER1,MITF,MLLT1,MNT,MTA1,MTA2,MTA3,MXI1,MYB,MYBL2,MYC,MYNN,NANOG,NBN,NCOA1,NCOA2,NCOA3,NCOA4,NCOA6,NCOR1,NEUROD1,NFATC1,NFATC3,NFE2,NFE2L2,NFIB,NFIC,NFRKB,NFXL1,NFYA,NFYB,NR0B1,NR2C1,NR2C2,NR2F1,NR2F2,NR2F6,NR3C1,NRF1,NUFIP1,PAX5,PAX8,PBX3,PCBP1,PCBP2,PHB2,PHF20,PHF21A,PHF8,PKNOX1,PLRG1,PML,POLR2A,POLR2G,POU2F2,PRDM10,PRPF4,PTBP1,PYGO2,RAD21,RAD51,RB1,RBBP5,RBFOX2,RBM14,RBM15,RBM17,RBM22,RBM25,RBM34,RBM39,RCOR1,RELB,REST,RFX1,RFX5,RLF,RNF2,RUNX1,RUNX3,RXRA,SAFB,SAFB2,SAP30,SETDB1,SIN3A,SIN3B,SIRT6,SIX4,SIX5,SKI,SKIL,SMAD1,SMAD2,SMAD5,SMARCA4,SMARCA5,SMARCB1,SMARCC2,SMARCE1,SMC3,SNRNP70,SOX13,SOX6,SP1,SPI1,SREBF1,SREBF2,SRF,SRSF4,SRSF7,SRSF9,STAT1,STAT2,STAT3,STAT5A,SUPT20H,SUZ12,TAF1,TAF15,TAF7,TAF9B,TAL1,TBL1XR1,TBP,TBX21,TBX3,TCF12,TCF7,TCF7L2,TEAD4,TFAP4,THAP1,THRA,TRIM22,TRIM24,TRIM28,TRIP13,U2AF1,U2AF2,UBTF,USF1,USF2,WHSC1,WRNIP1,XRCC3,XRCC5,YY1,ZBED1,ZBTB1,ZBTB11,ZBTB2,ZBTB33,ZBTB40,ZBTB5,ZBTB7A,ZBTB7B,ZBTB8A,ZEB1,ZEB2,ZFP91,ZFX,ZHX1,ZHX2,ZKSCAN1,ZMIZ1,ZMYM3,ZNF143,ZNF184,ZNF207,ZNF217,ZNF24,ZNF274,ZNF280A,ZNF282,ZNF316,ZNF318,ZNF384,ZNF407,ZNF444,ZNF507,ZNF512B,ZNF574,ZNF579,ZNF592,ZNF639,ZNF687,ZNF8,ZNF830,ZSCAN29,ZZZ3\ idInUrlSql select value from factorbookGeneAlias where name='%s'\ inputTableFieldDisplay cellType factor experiment lab\ inputTableFieldUrls experiment="https://www.encodeproject.org/experiments/$$"\ inputTrackTable encRegTfbsClusteredInputs\ longLabel Transcription Factor ChIP-seq Clusters (338 factors, 130 cell types) from ENCODE 3\ maxWindowToDraw 10000000\ parent wgEncodeReg\ priority 1.6\ shortLabel Txn Factr ChIP E3\ sourceTable encRegTfbsClusteredSources\ track encRegTfbsClustered\ type factorSource\ url http://www.factorbook.org/mediawiki/index.php/$$\ urlLabel Factorbook Link:\ useScore 1\ visibility hide\ wgEncodeRegTfbsClusteredV3 Txn Factor ChIP factorSource Transcription Factor ChIP-seq Clusters (161 factors) from ENCODE with Factorbook Motifs 0 1.71 0 0 0 127 127 127 1 0 0 http://www.factorbook.org/mediawiki/index.php/$$

Description

\

\ This track shows regions of transcription factor binding derived from a large collection\ of ChIP-seq experiments performed by the ENCODE project, together with DNA binding motifs \ identified within these regions by the ENCODE\ \ Factorbook repository.

\

\ Transcription factors (TFs) are proteins that bind to DNA and interact with RNA polymerases to\ regulate gene expression. Some TFs contain a DNA binding domain and can bind directly to \ specific short DNA sequences ('motifs');\ others bind to DNA indirectly through interactions with TFs containing a DNA binding domain.\ High-throughput antibody capture and sequencing methods (e.g. chromatin immunoprecipitation\ followed by sequencing, or 'ChIP-seq') can be used to identify regions of\ TF binding genome-wide. These regions are commonly called ChIP-seq peaks.

\

\ ENCODE TFBS ChIP-seq data were processed using the computational pipeline developed\ by the ENCODE Analysis Working Group to generate uniform peaks of TF binding.\ Peaks for 161 transcription factors in\ 91 cell types are combined here into clusters to produce a summary display showing \ occupancy regions for each factor and motif sites within the regions when identified.\ Additional views of the underlying ChIP-seq data and documentation on the methods used\ to generate it are available from the\ ENCODE Uniform TFBS track.\ \

\ \

Display Conventions

\

\ A gray box encloses each peak cluster of transcription factor occupancy, with the\ darkness of the box being proportional to the maximum signal strength observed in any cell line\ contributing to the cluster. The HGNC gene name for the transcription factor is shown \ to the left of each cluster. Within a cluster, a green highlight indicates \ the highest scoring site of a Factorbook-identified canonical motif for\ the corresponding factor. (NOTE: motif highlights are shown\ only in browser windows of size 50,000 bp or less, and their display can be suppressed by unchecking\ the highlight motifs box on the track configuration page).\ Arrows on the highlight designate the matching strand of the motif.\

\

\ The cell lines where signal was detected for the factor are identified by single-letter \ abbreviations shown to the right of the cluster. \ The darkness of each letter is proportional to the signal strength observed in the cell line. \ Abbreviations starting with capital letters designate\ ENCODE cell types identified for intensive study - Tier 1 and Tier 2 - \ while those starting with lowercase letters designate Tier 3 cell lines.

\

\ Click on a peak cluster to see more information about the TF/cell assays contributing to the\ cluster, the cell line abbreviation table, and details about the highest scoring canonical \ motif in the cluster.\

\ \

Methods

\

\

\ Peaks of transcription factor occupancy from uniform processing of ENCODE ChIP-seq data\ by the ENCODE Analysis Working Group were filtered to exclude datasets that did not pass the\ integrated quality metric\ (see "Quality Control" section of Uniform TFBS) \ and then were clustered using the UCSC hgBedsToBedExps tool. \ Scores were assigned to peaks by multiplying the input signal values by a normalization\ factor calculated as the ratio of the maximum score value (1000) to the signal value at one\ standard deviation from the mean, with values exceeding 1000 capped at 1000. This has the\ effect of distributing scores up to mean plus one 1 standard deviation across the score range,\ but assigning all above to the maximum score.\ The cluster score is the highest score for any peak contributing to the cluster.

\

\ The Factorbook motif discovery and annotation pipeline uses\ the MEME-ChIP and FIMO tools from the MEME software suite in conjunction with machine learning methods and\ manual curation to merge discovered motifs with known motifs reported in \ Jaspar and\ TransFac.\ Motif identifications reported in Wang et al. 2012 (below) were supplemented in this track\ with more recent data (derived from newer ENCODE datasets - Jan 2011 through Mar 2012 freezes),\ provided by the Factorbook team. Motif identifications from all datasets were merged, with\ the most significant value (qvalue) reported being picked when motifs were duplicated in\ multiple cell lines. The scores for the selected best-scoring motif sites were then transformed\ to -log10.\ \

\ \

Release Notes

\

\ Release 4 (February 2014) of this track adds display of the Factorbook motifs.\ Release 3 (August 2013) added 124 datasets (690 total, vs. 486 in Release 2),\ representing all ENCODE TF ChIP-seq passing quality assessment through \ the ENCODE March 2012 data freeze.\ The peaks used to generate these clusters were called with less stringent thresholds than \ used during the January 2011 uniform processing shown in Release 2 of this track.\ The contributing datasets are displayed as individual\ tracks in the ENCODE Uniform TFBS track, which is available along with the primary data tracks\ in the ENC TF Binding Supertrack page.\ The clustering for V3/V4 is based on the transcription factor target, and so differs from V2 where clustering was based on antibody.\

\

\ For the V3/V4 releases, a new track table format, 'factorSource' was used to represent \ the primary clusters table and downloads file, wgEncodeRegTfbsClusteredV3. \ This format consists of standard BED5\ fields (see File Formats) \ followed by an experiment count field (expCount) and finally two fields containing comma-separated lists.\ The first list field (expNums) contains numeric identifiers for experiments,\ keyed to the wgEncodeRegTfbsClusteredInputsV3 table,\ which includes such information as the experiment's underlying Uniform TFBS table name,\ factor targeted, antibody used, cell type, treatment (if any), and laboratory source. \ The second list field (expScores) contains the scores for the corresponding experiments. \ For convenience, the \ \ file downloads directory\ for this track also contains a BED file,\ wgEncodeRegTfbsClusteredWithCellsV3, that lists each cluster with the cluster score followed by a comma-separated list of cell types.\

\

\ The Factorbook\ motif positions that display as green boxes on the track come from an additional table\ called factorbookMotifPos, and are supported by additional metadata tables such as\ factorbookMotifCanonical that connects different terms used\ for the same factor (RELA <--> NFKB1), and factorbookGeneAlias\ that connects terms to the the link used at factorbook.org (EGR1 <-->\ EGR-1),\ and lastly a position weight matrix table, factorbookMotifPwm, used in\ building the graphical sequence logo for each motif on the item details page.\ These tables are available on our public MySQL server and as files on our\ download server.\

\ \

Credits

\

\ This track shows ChIP-seq data from the Myers Lab at the HudsonAlpha Institute for Biotechnology and by the labs of\ Michael Snyder,\ Mark Gerstein,\ Sherman Weissman\ at Yale University,\ Peggy Farnham \ at the University of Southern California,\ Kevin Struhl at Harvard,\ Kevin White \ at the University of Chicago, and\ Vishy Iyer \ at the University of Texas, Austin.\ These data were processed into uniform peak calls by the ENCODE Analysis Working Group pipeline\ developed by\ Anshul Kundaje\ The clustering of the uniform peaks was performed by UCSC.\ The Factorbook motif identifications and localizations (and valuable assistance with \ interpretation) were provided by Jie Wang, Bong Hyun Kim and Jiali Zhuang of the \ Zlab (Weng Lab) at UMass Medical\ School.

\ \

References

\ \

\ Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J,\ Alexander R et al.\ \ Architecture of the human regulatory network derived from ENCODE data.\ Nature. 2012 Sep 6;489(7414):91-100.\ PMID: 22955619\

\

\ Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y\ et al.\ \ Sequence features and chromatin structure around the genomic regions bound by 119 human\ transcription factors.\ Genome Res. 2012 Sep;22(9):1798-812.\ PMID: 22955990; PMC: PMC3431495\

\

\ Wang J, Zhuang J, Iyer S, Lin XY, Greven MC, Kim BH, Moore J, Pierce BG, Dong X, Virgil D et\ al.\ \ Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE\ consortium.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D171-6.\ PMID: 23203885; PMC: PMC3531197\

\ \

Data Release Policy

\

\ While primary ENCODE data was subject to a restriction period as described in the \ \ ENCODE data release policy, this restriction does not apply to the integrative \ analysis results, and all primary data underlying this track have passed the restriction date. \ The data in this track are freely available.

\ regulation 1 controlledVocabulary encode/cv.ra cellType=cell treatment=treatment lab=lab\ dataVersion ENCODE Mar 2012 Freeze\ filterBy name:factor=ARID3A,ATF1,ATF2,ATF3,BACH1,BATF,BCL11A,BCL3,BCLAF1,BDP1,BHLHE40,BRCA1,BRF1,BRF2,CBX3,CCNT2,CEBPB,CEBPD,CHD1,CHD2,CREB1,CTBP2,CTCF,CTCFL,E2F1,E2F4,E2F6,EBF1,EGR1,ELF1,ELK1,ELK4,EP300,ESR1,ESRRA,ETS1,EZH2,FAM48A,FOS,FOSL1,FOSL2,FOXA1,FOXA2,FOXM1,FOXP2,GABPA,GATA1,GATA2,GATA3,GRp20,GTF2B,GTF2F1,GTF3C2,HDAC1,HDAC2,HDAC6,HDAC8,HMGN3,HNF4A,HNF4G,HSF1,IKZF1,IRF1,IRF3,IRF4,JUN,JUNB,JUND,KAP1,KDM5A,KDM5B,MAFF,MAFK,MAX,MAZ,MBD4,MEF2A,MEF2C,MTA3,MXI1,MYBL2,MYC,NANOG,NFATC1,NFE2,NFIC,NFYA,NFYB,NR2C2,NR2F2,NR3C1,NRF1,PAX5,PBX3,PHF8,PML,POLR2A,POLR3G,POU2F2,POU5F1,PPARGC1A,PRDM1,RAD21,RBBP5,RCOR1,RDBP,RELA,REST,RFX5,RPC155,RUNX3,RXRA,SAP30,SETDB1,SIN3A,SIN3AK20,SIRT6,SIX5,SMARCA4,SMARCB1,SMARCC1,SMARCC2,SMC3,SP1,SP2,SP4,SPI1,SREBP1,SRF,STAT1,STAT2,STAT3,STAT5A,SUZ12,TAF1,TAF7,TAL1,TBL1XR1,TBP,TCF12,TCF3,TCF7L2,TEAD4,TFAP2A,TFAP2C,THAP1,TRIM28,UBTF,USF1,USF2,WRNIP1,YY1,ZBTB33,ZBTB7A,ZEB1,ZKSCAN1,ZNF143,ZNF217,ZNF263,ZNF274,ZZZ3\ idInUrlSql select value from factorbookGeneAlias where name='%s'\ inputTableFieldDisplay cellType factor antibody treatment lab\ inputTrackTable wgEncodeRegTfbsClusteredInputsV3\ longLabel Transcription Factor ChIP-seq Clusters (161 factors) from ENCODE with Factorbook Motifs\ maxWindowToDraw 10000000\ motifDrawDefault on\ motifMapTable factorbookMotifCanonical\ motifMaxWindow 50000\ motifPwmTable factorbookMotifPwm\ motifTable factorbookMotifPos\ priority 1.71\ shortLabel Txn Factor ChIP\ sourceTable wgEncodeRegTfbsCellsV3\ superTrack wgEncodeReg dense\ track wgEncodeRegTfbsClusteredV3\ type factorSource\ url http://www.factorbook.org/mediawiki/index.php/$$\ urlLabel Factorbook Link:\ useScore 1\ visibility hide\ wgEncodeRegTfbsClusteredV2 Txn Fac ChIP V2 factorSource Transcription Factor ChIP-seq from ENCODE (V2) 0 1.73 0 0 0 127 127 127 1 0 0

Description

\

\ This track shows regions\ where transcription factors, proteins responsible for\ modulating gene transcription, bind to DNA as assayed by ChIP-seq (chromatin immunoprecipitation with antibodies \ specific to the transcription factor followed by sequencing of the precipitated DNA).\ Additional views of this dataset and additional documentation on the methods used\ for this track are available at the\ ENC TF Binding Supertrack page.\ The peaks were computed using a uniform pipeline developed by Anshul Kundaje that uses the\ variation between the two replicates to develop sensible peak thresholds. This track combines\ data from many different cell lines and transcription-factor targeting antibodies into a\ relatively dense display. \

\

Display Conventions

\

\ A gray box encompasses the peaks of transcription factor occupancy. The darkness of the box \ is proportional to the maximum signal strength observed in any cell line. The name to the left\ of the box is the transcription factor. The letters to the right represent the cell lines where\ a signal is detected. The darkness of the letter is proportional to the signal strength in\ the cell line. Click on an item in the track to see the cell lines spelled out. \

\ \

Release Notes

\

\ Release 2 (May 2012) of this track fixes a bug that, in some cases, was causing the score values of\ signals within a cluster to be displayed incorrectly.\

\ \

Credits

\

\ This track shows data from the Myers Lab at the HudsonAlpha Institute for Biotechnology and by the labs of\ Michael Snyder,\ Mark Gerstein and\ Sherman Weissman at Yale University;\ Peggy Farnham at UC Davis; and\ Kevin Struhl at Harvard.\ Kevin White at The University of Chicago.\ Vishy Iyer at The University of Texas Austin.\

\ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. The full data release policy\ for ENCODE is available here.

\ regulation 1 controlledVocabulary encode/cv.ra cellType=cell treatment=treatment lab=lab\ dataVersion ENCODE Jan 2011 Freeze\ html wgEncodeRegTfbsClustered.release2\ inputTableFieldDisplay cellType factor treatment lab\ inputTrackTable wgEncodeRegTfbsClusteredInputs\ longLabel Transcription Factor ChIP-seq from ENCODE (V2)\ priority 1.73\ shortLabel Txn Fac ChIP V2\ sourceTable wgEncodeRegTfbsCells\ superTrack wgEncodeReg hide\ track wgEncodeRegTfbsClusteredV2\ type factorSource\ useScore 1\ visibility hide\ netSarHar1 Tasmanian devil Net netAlign sarHar1 chainSarHar1 Tasmanian devil (Feb. 2011 (WTSI Devil_ref v7.0/sarHar1)) Alignment Net 1 2 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Tasmanian devil (Feb. 2011 (WTSI Devil_ref v7.0/sarHar1)) Alignment Net\ otherDb sarHar1\ parent vertebrateChainNetViewnet off\ shortLabel Tasmanian devil Net\ subGroups view=net species=s002 clade=c00\ track netSarHar1\ type netAlign sarHar1 chainSarHar1\ netPanTro4 Chimp Net netAlign panTro4 chainPanTro4 Chimp (Feb. 2011 (CSAC 2.1.4/panTro4)) Alignment Net 1 2 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Chimp (Feb. 2011 (CSAC 2.1.4/panTro4)) Alignment Net\ otherDb panTro4\ parent primateChainNetViewnet on\ shortLabel Chimp Net\ subGroups view=net species=s004 clade=c00\ track netPanTro4\ type netAlign panTro4 chainPanTro4\ netCavPor3 Guinea pig Net netAlign cavPor3 chainCavPor3 Guinea pig (Feb. 2008 (Broad/cavPor3)) Alignment Net 1 2 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Guinea pig (Feb. 2008 (Broad/cavPor3)) Alignment Net\ otherDb cavPor3\ parent placentalChainNetViewnet on\ shortLabel Guinea pig Net\ subGroups view=net species=s000 clade=c00\ track netCavPor3\ type netAlign cavPor3 chainCavPor3\ tgpPhase3AccessibilityStrictCriteria 1000G Accs Strict bigBed 3 1000 Genomes Project Phase 3 Paired-end Accessible Regions - Strict Criteria 3 2 0 0 0 127 127 127 0 0 22 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9, varRep 1 bigDataUrl /gbdb/hg19/1000Genomes/phase3/20141020.strict_mask.whole_genome.bb\ color 0,0,0\ longLabel 1000 Genomes Project Phase 3 Paired-end Accessible Regions - Strict Criteria\ parent tgpPhase3Accessibility\ shortLabel 1000G Accs Strict\ track tgpPhase3AccessibilityStrictCriteria\ tgpPhase1AccessibilityStrictCriteria 1000G Accs Strict bigBed 3 1000 Genomes Project Phase 1 Paired-end Accessible Regions - Strict Criteria 0 2 0 0 0 127 127 127 0 0 15 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22, varRep 1 color 0,0,0\ longLabel 1000 Genomes Project Phase 1 Paired-end Accessible Regions - Strict Criteria\ parent tgpPhase1Accessibility\ shortLabel 1000G Accs Strict\ track tgpPhase1AccessibilityStrictCriteria\ encTfChipPkENCFF325WAV A549 BCL3 narrowPeak Transcription Factor ChIP-seq Peaks of BCL3 in A549 from ENCODE 3 (ENCFF325WAV) 1 2 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of BCL3 in A549 from ENCODE 3 (ENCFF325WAV)\ parent encTfChipPk off\ shortLabel A549 BCL3\ subGroups cellType=A549 factor=BCL3\ track encTfChipPkENCFF325WAV\ wgEncodeHaibRnaSeqA549Dex100nmAlnRep1 A549 DEX100nM 1 bam A549 DEX 1 hr 100 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 2 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 DEX 1 hr 100 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel A549 DEX100nM 1\ subGroups view=Alignments cellType=t2A549 treatment=DEX100NM rep=rep1\ track wgEncodeHaibRnaSeqA549Dex100nmAlnRep1\ type bam\ gtexEqtlTissueAdiposeVisceral adiposeVisceral bed 9 + Expression QTL in Adipose_Visceral_Omentum from GTEx V6 0 2 238 154 0 246 204 127 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 238,154,0\ idInUrlSql select gene from gtexEqtlTissueAdiposeVisceral where name='%s'\ longLabel Expression QTL in Adipose_Visceral_Omentum from GTEx V6\ parent gtexEqtlTissue on\ shortLabel adiposeVisceral\ track gtexEqtlTissueAdiposeVisceral\ lincRNAsCTAdrenal Adrenal bed 5 + lincRNAs from adrenal 1 2 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from adrenal\ parent lincRNAsAllCellType on\ shortLabel Adrenal\ subGroups view=lincRNAsRefseqExp tissueType=adrenal\ track lincRNAsCTAdrenal\ affyGnf1h Affy GNF1H psl . Alignments of Affymetrix Consensus/Exemplars from GNF1H 0 2 0 0 0 127 127 127 0 0 0

Description

This track shows the location of the sequences used for the selection of\ probes on the Affymetrix GNF1H chips. This contains 11406 predicted genes that do not overlap with\ the Affy U133A chip.

\ \

Methods

The sequences were mapped to the genome using blat followed by pslReps with the\ parameters: 

-minCover=0.3 -minAli=0.95 -nearTop=0.005

\ \

Credits

Thanks to the Genomics\ Institute of the Novartis Research Foundation (GNF) for the data underlying this track.

\ \

References

\

\ Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G\ et al.\ \ A gene atlas of the mouse and human protein-encoding transcriptomes.\ Proc Natl Acad Sci U S A. 2004 Apr 20;101(16):6062-7.\ PMID: 15075390; PMC: PMC395923\

\ expression 1 group expression\ html ../affyGnf1h\ longLabel Alignments of Affymetrix Consensus/Exemplars from GNF1H\ parent affyArchive\ priority 2\ shortLabel Affy GNF1H\ track affyGnf1h\ type psl .\ visibility hide\ snpArrayAffy6SV Affy SNP 6.0 SV bed 6 + Affymetrix SNP 6.0 Structural Variation 0 2 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Affymetrix SNP 6.0 Structural Variation\ origAssembly hg18\ parent genotypeArrays\ priority 2\ shortLabel Affy SNP 6.0 SV\ track snpArrayAffy6SV\ type bed 6 +\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep1LK1_CNhs13339_ctss_rev AorticSmsToFgf2_00hr00minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)_CNhs13339_12642-134G5_reverse 0 2 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12642-134G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep1%20%28LK1%29.CNhs13339.12642-134G5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)_CNhs13339_12642-134G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12642-134G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep1LK1_CNhs13339_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12642-134G5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep1LK1_CNhs13339_tpm_rev AorticSmsToFgf2_00hr00minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)_CNhs13339_12642-134G5_reverse 1 2 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12642-134G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep1%20%28LK1%29.CNhs13339.12642-134G5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)_CNhs13339_12642-134G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12642-134G5 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToFgf2_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep1LK1_CNhs13339_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12642-134G5\ urlLabel FANTOM5 Details:\ cons46wayViewphyloP Basewise Conservation (phyloP) bed 4 Vertebrate Multiz Alignment & Conservation (46 Species) 2 2 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Vertebrate Multiz Alignment & Conservation (46 Species)\ parent cons46way\ shortLabel Basewise Conservation (phyloP)\ track cons46wayViewphyloP\ view phyloP\ viewLimits -.3:2\ viewLimitsMax -15.41:7.13\ visibility full\ iscaBenign Benign gvf ClinGen CNVs: Benign 3 2 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/?term=$$ phenDis 1 longLabel ClinGen CNVs: Benign\ parent iscaViewDetail off\ shortLabel Benign\ subGroups view=cnv class=ben level=sub\ track iscaBenign\ patBulk Bulk patents bigBed 12 + Patent Lens Bulk patents 0 2 0 0 0 127 127 127 0 0 0 https://www.lens.org/lens/bio/patseqanalyzer#psa/homo_sapiens/latest/chromosome/$s/${-$}?appInClaims=1 phenDis 1 longLabel Patent Lens Bulk patents\ parent patSeq\ priority 2\ shortLabel Bulk patents\ track patBulk\ type bigBed 12 +\ visibility hide\ cgapSage CGAP SAGE bed 8 + CGAP Long SAGE 0 2 0 0 0 127 127 127 0 0 0

Description

\

\ This track displays genomic mappings for human LongSAGE tags from the\ The Cancer Genome Anatomy\ Project. SAGE (Serial Analysis of Gene Expression) [Velculescu 1995] is a\ quantitative technique for measuring gene expression. For a brief overview\ of SAGE, see the CGAP SAGE information page.\

\ \

Display Conventions and Configuration

\

\ Genomic mappings of 17-base LongSAGE tags are displayed. Tag counts are\ normalized to tags per million (TPM) in each tissue or library. Tags with higher TPM are\ more darkly shaded. The CATG restriction site before the start of the\ tag is rendered as a thick line; the 17 bases of the tag are drawn as a thinner\ line. Thus the thin end of the tag points in the direction of transcription.\ \ The track display modes are:\

    \
  • dense - Draws locations of mapped tags on a single line.\
  • squish - Draws one item per tag per library without labels.\
  • pack - Draws one item per tag per tissue with labels. The label\ includes the number of libraries of each tissue type containing the tag.\ Clicking on an item lists the libraries containing the tag, with the libraries\ from the selected tissue in bold. Clicking on a library in the list\ displays detailed information about that library. \
  • full - Draws one item per tag per library.\ Clicking on an item displays information about the library, along with other\ libraries containing the tag.\
\

\

\ The track can be configured to display only tags from a selected tissue.\

\ \

Methods

\

\ Tag and library data, along with genomic mappers, were obtained\ from The Cancer Genome Anatomy Project.\

\

\ Information about the various SAGE libraries, data downloads and other tools\ for exploring and analyzing these data is available from the \ CGAP SAGE Genie web\ site.\

\ \

Mapping SAGE tags to the human genome

\

\ The goal of the SAGE tag mapping is to identify the genomic\ loci of the associated mRNAs. Since it is impossible to disambiguate tags\ that map to multiple loci, only unique genomic mappings are kept. To compensate\ for polypmorphisms between the reference genome and the mRNA libraries, \ SNPs are considered by the mapping algorithm.\

\

\ For each position in the genome on both strands, all\ possible 21-mers, given all combinations of SNPs, were considered. The 21-mers\ beginning with CATG were generated for use in mapping. Only 21-mers\ that were unique across the genome were used in placing SAGE tags.\

\

\ Only SNPs from dbSNP with the following characteristics were used:\

    \
  • single-base\
  • maps to a single genomic location\
  • reference allele matches reference genome\
  • does not occur in a tandem repeat\
\

\

Human embryonic stem cell (ESC) library construction

\

\ Detailed information regarding the human ESC lines used in this study can be\ found at https://stemcells.nih.gov and in Hirst et al. 2007.\ The ESC tags were generated from RNA purified from human ESCs maintained under\ conditions that promote their maintenance in an undifferentiated state.\

\ \

\ A complete set of embryonic stem cell LongSAGE tags is available through the\ CGAP web portal.\

\ \

Credits

\

\ Many thanks to Martin Hirst of Canada's Michael Smith Genome Sciences Centre for his\ assistance in developing this track.\

\ \

\ The LongSAGE data and genomic mappings were provided by the \ The Cancer Genome Anatomy\ Project of the National\ Cancer Institute, U.S. National\ Institutes of Health.\

\ \

The human embryonic stem cell library was supported by funds from the\ National Cancer Institute, National Institutes of Health, under Contract\ No. N01-C0-12400 and by grants from Genome Canada, Genome British Columbia and\ the Canadian Stem Cell Network.\

\ \

References

\

\ Boon K, Osorio EC, Greenhut SF, Schaefer CF, Shoemaker J, Polyak K, Morin PJ, Buetow KH, Strausberg\ RL, De Souza SJ et al.\ \ An anatomy of normal and malignant gene expression.\ Proc Natl Acad Sci U S A. 2002 Aug 20;99(17):11287-92.\ PMID: 12119410; PMC: PMC123249\

\ \

\ Hirst M, Delaney A, Rogers SA, Schnerch A, Persaud DR, O'Connor MD, Zeng T, Moksa M, Fichter K, Mah\ D et al.\ \ LongSAGE profiling of nine human embryonic stem cell lines.\ Genome Biol. 2007;8(6):R113.\ PMID: 17570852; PMC: PMC2394759\

\ \

\ Khattra J, Delaney AD, Zhao Y, Siddiqui A, Asano J, McDonald H, Pandoh P, Dhalla N, Prabhu AL, Ma K\ et al.\ \ Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell\ lines.\ Genome Res. 2007 Jan;17(1):108-16.\ PMID: 17135571; PMC: PMC1716260\

\ \

\ Lal A, Lash AE, Altschul SF, Velculescu V, Zhang L, McLendon RE, Marra MA, Prange C, Morin PJ,\ Polyak K et al.\ \ A public database for gene expression in human cancers.\ Cancer Res. 1999 Nov 1;59(21):5403-7.\ PMID: 10554005\

\ \

\ Liang P.\ \ SAGE Genie: a suite with panoramic view of gene expression.\ Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11547-8.\ PMID: 12195021; PMC: PMC129301\

\ \

\ Riggins GJ, Strausberg RL.\ \ Genome and genetic resources from the Cancer Genome Anatomy Project.\ Hum Mol Genet. 2001 Apr;10(7):663-7.\ PMID: 11257097\

\ \

\ Saha S, Sparks AB, Rago C, Akmaev V, Wang CJ, Vogelstein B, Kinzler KW, Velculescu VE.\ \ Using the transcriptome to annotate the genome.\ Nat Biotechnol. 2002 May;20(5):508-12.\ PMID: 11981567\

\ \

\ Siddiqui AS, Khattra J, Delaney AD, Zhao Y, Astell C, Asano J, Babakaiff R, Barber S, Beland J,\ Bohacec S et al.\ \ A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely\ defined developing C57BL/6J mouse tissues and cells.\ Proc Natl Acad Sci U S A. 2005 Dec 20;102(51):18485-90.\ PMID: 16352711; PMC: PMC1311911\

\ \

\ Velculescu VE, Zhang L, Vogelstein B, Kinzler KW.\ \ Serial analysis of gene expression.\ Science. 1995 Oct 20;270(5235):484-7.\ PMID: 7570003\

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for dosage pathogenicity,2|Some evidence for dosage pathogenicity,3|Sufficient evidence for dosage pathogenicity,30|Gene associated with autosomal recessive phenotype,40|Dosage sensitivity unlikely\ longLabel ClinGen Dosage Sensitivity Map - Triplosensitivity\ mouseOverField _mouseOver\ parent clinGenComp on\ priority 2\ shortLabel ClinGen Triplosensitivity\ track clinGenTriplo\ type bigBed 9 +\ urls url="$$" PMID1="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID2="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID3="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID4="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID5="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID6="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" mondoID="https://monarchinitiative.org/disease/$$"\ visibility pack\ clinvarCnv ClinVar CNVs bigBed 12 + ClinVar Copy Number Variants >= 50bp 0 2 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg19/bbi/clinvar/clinvarCnv.bb\ filter._varLen 50:999999999\ filterByRange._varLen on\ filterLabel._originCode Alelle Origin\ filterLimits._varLen 50:999999999\ filterType._allTypeCode multiple\ filterType._clinSignCode multiple\ filterType._originCode multiple\ filterValues._allTypeCode SUBST|single nucleotide variant - SUBST,STRUCT|translocation and fusion - STRUCT,LOSS|deletion and copy loss - LOSS,GAIN|duplication and copy gain - GAIN,INS|indel and insertion - INS,INV|inversion - INV,SEQALT|undetermined - SEQALT,SEQLEN|repeat change - SEQLEN\ filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other\ filterValues._originCode GERM|germline,SOM|somatic,GERMSOM|germline/somatic,NOVO|de novo,UNK|unknown\ group phenDis\ 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wgEncodeGencodeCompV7 Comprehensive genePred Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7 2 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7\ parent wgEncodeGencodeV7ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV7\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV37lift37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 37lift37 (Ensembl 103) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 37lift37 (Ensembl 103)\ parent wgEncodeGencodeV37lift37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV37lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV27lift37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 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ENCODE/GENCODE Version 14\ parent wgEncodeGencodeV14ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV14\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV17 Comprehensive genePred Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17\ parent wgEncodeGencodeV17ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV17\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV19 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 19 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 19\ parent wgEncodeGencodeV19ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV19\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV33lift37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)\ parent wgEncodeGencodeV33lift37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV33lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV38lift37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 38lift37 (Ensembl 104) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 38lift37 (Ensembl 104)\ parent wgEncodeGencodeV38lift37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV38lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV28lift37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)\ parent wgEncodeGencodeV28lift37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV28lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV44lift37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 44lift37 (Ensembl 110) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 44lift37 (Ensembl 110)\ parent wgEncodeGencodeV44lift37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV44lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV34lift37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 34lift37 (Ensembl 100) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 34lift37 (Ensembl 100)\ parent wgEncodeGencodeV34lift37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV34lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV24lift37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)\ parent wgEncodeGencodeV24lift37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV24lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV40lift37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 40lift37 (Ensembl 106) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 40lift37 (Ensembl 106)\ parent wgEncodeGencodeV40lift37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV40lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV39lift37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 39lift37 (Ensembl 105) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 39lift37 (Ensembl 105)\ parent wgEncodeGencodeV39lift37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV39lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV45lift37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 45lift37 (Ensembl 111) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 45lift37 (Ensembl 111)\ parent wgEncodeGencodeV45lift37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV45lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV35lift37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 35lift37 (Ensembl 101) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 35lift37 (Ensembl 101)\ parent wgEncodeGencodeV35lift37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV35lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV41lift37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 41lift37 (Ensembl 107) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 41lift37 (Ensembl 107)\ parent wgEncodeGencodeV41lift37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV41lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV31lift37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)\ parent wgEncodeGencodeV31lift37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV31lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV46lift37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 46lift37 (Ensembl 112) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 46lift37 (Ensembl 112)\ parent wgEncodeGencodeV46lift37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV46lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV36lift37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 36lift37 (Ensembl 102) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 36lift37 (Ensembl 102)\ parent wgEncodeGencodeV36lift37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV36lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV42lift37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 42lift37 (Ensembl 108) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 42lift37 (Ensembl 108)\ parent wgEncodeGencodeV42lift37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV42lift37\ trackHandler wgEncodeGencode\ type genePred\ cons46way Cons 46-Way bed 4 Vertebrate Multiz Alignment & Conservation (46 Species) 0 2 0 0 0 127 127 127 0 0 0

Description

\

\ This track shows multiple alignments of 46 vertebrate\ species and measurements of evolutionary conservation using\ two methods (phastCons and phyloP) from the\ \ PHAST package, for \ all species (vertebrate) and two subsets (primate and placental mammal).\ The multiple alignments were generated using multiz and \ other tools in the UCSC/Penn State Bioinformatics\ comparative genomics alignment pipeline.\ Conserved elements identified by phastCons are also displayed in\ this track.\

\

\ PhastCons (which has been used in previous Conservation tracks) is a hidden\ Markov model-based method that estimates the probability that each\ nucleotide belongs to a conserved element, based on the multiple alignment.\ It considers not just each individual alignment column, but also its\ flanking columns. By contrast, phyloP separately measures conservation at\ individual columns, ignoring the effects of their neighbors. As a\ consequence, the phyloP plots have a less smooth appearance than the\ phastCons plots, with more "texture" at individual sites. The two methods\ have different strengths and weaknesses. PhastCons is sensitive to "runs"\ of conserved sites, and is therefore effective for picking out conserved\ elements. PhyloP, on the other hand, is more appropriate for evaluating\ signatures of selection at particular nucleotides or classes of nucleotides\ (e.g., third codon positions, or first positions of miRNA target sites).\

\

\ Another important difference is that phyloP can measure acceleration\ (faster evolution than expected under neutral drift) as well as\ conservation (slower than expected evolution). In the phyloP plots, sites\ predicted to be conserved are assigned positive scores (and shown in blue),\ while sites predicted to be fast-evolving are assigned negative scores (and\ shown in red). The absolute values of the scores represent -log p-values\ under a null hypothesis of neutral evolution. The phastCons scores, by\ contrast, represent probabilities of negative selection and range between 0\ and 1.\

\

\ Both phastCons and phyloP treat alignment gaps and unaligned nucleotides as\ missing data, and both were run with the same parameters for each\ species set (vertebrates, placental mammals, and primates).\ Thus, in regions in which only primates appear in the alignment, all three\ sets of scores will be the same, but in regions in which additional species\ are available, the mammalian and/or vertebrate scores may differ from the\ primate scores. The alternative\ plots help to identify sequences that are under different evolutionary\ pressures in, say, primates and non-primates, or mammals and non-mammals. \

\ \

\ The species aligned for this track include the reptile, amphibian, \ bird, and fish clades, as well as marsupial, monotreme (platypus), \ and placental mammals. Compared to the previous 44-vertebrate alignment (hg18),\ this track includes 2 new species and 5 species with updated\ sequence assemblies (Table 1). The new species consist of two \ assemblies: baboon (papHam1) at 5.3X coverage and wallaby (macEug1) at 2X\ coverage.\ The elephant, opossum, rabbit, tetraodon, and zebrafish assemblies\ have been updated from those used in the previous 44-species alignment.\

\

\ UCSC has repeatmasked and aligned the low-coverage genome assemblies, and\ provides the sequence for download; however, we do not construct\ genome browsers for them. Missing sequence in the low-coverage assemblies is\ highlighted in the track display by regions of yellow when zoomed out\ and Ns displayed at base level (see Gap Annotation, below).

\

\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
OrganismSpeciesRelease dateUCSC versionalignment type
HumanHomo sapiens\ Feb. 2009 hg19/GRCh37reference species
AlpacaVicugna pacosJul. 2008vicPac1*Reciprocal Best
ArmadilloDasypus novemcinctusJul. 2008dasNov2*Reciprocal Best
BaboonPapio hamadryasNov. 2008papHam1*Reciprocal Best
BushbabyOtolemur garnettiiDec. 2006otoGar1*Reciprocal Best
CatFelis catus\ Mar. 2006felCat3Reciprocal Best
ChickenGallus gallus\ May 2006galGal3Syntenic Net
ChimpPan troglodytes\ Mar. 2006panTro2Syntenic Net
CowBos taurus\ Oct. 2007bosTau4Syntenic Net
DogCanis lupus familiaris\ May 2005canFam2Syntenic Net
DolphinTursiops truncatusFeb. 2008turTru1*Reciprocal Best
ElephantLoxodonta africanaJul. 2009loxAfr3Syntenic Net
FuguTakifugu rubripes\ Oct. 2004fr2MAF Net
GorillaGorilla gorilla gorillaOct. 2008gorGor1*Reciprocal Best
Guinea PigCavia porcellus\ Feb. 2008cavPor3Syntenic Net
HedgehogErinaceus europaeusJune 2006eriEur1*Reciprocal Best
HorseEquus caballus\ Sep. 2007equCab2Syntenic Net
Kangaroo ratDipodomys ordiiJul. 2008dipOrd1*Reciprocal Best
LampreyPetromyzon marinus\ Mar. 2007petMar1MAF Net
LizardAnolis carolinensis\ Feb. 2007anoCar1Syntenic Net
MarmosetCallithrix jacchus\ June 2007calJac1Reciprocal Best
MedakaOryzias latipes\ Oct. 2005oryLat2MAF Net
MegabatPteropus vampyrusJul. 2008pteVam1*Reciprocal Best
Little brown batMyotis lucifugusMar. 2006myoLuc1*Reciprocal Best
MouseMus musculus\ July 2007mm9Syntenic Net
Mouse lemurMicrocebus murinusJul. 2007micMur1*Reciprocal Best
OpossumMonodelphis domestica\ Oct. 2006monDom5Syntenic Net
OrangutanPongo pygmaeus abelii\ July 2007ponAbe2Syntenic Net
PikaOchotona princepsJul. 2008ochPri2*Reciprocal Best
PlatypusOrnithorhynchus anatinus\ Mar. 2007ornAna1Reciprocal Best
RabbitOryctolagus cuniculus\ Apr. 2009oryCun2Syntenic Net
RatRattus norvegicus\ Nov. 2004rn4Syntenic Net
RhesusMacaca mulatta\ Jan. 2006rheMac2Syntenic Net
Rock hyraxProcavia capensis\ Jul. 2008proCap1*Reciprocal Best
ShrewSorex araneusJune 2006sorAra1*Reciprocal Best
SlothCholoepus hoffmanniJul. 2008choHof1*Reciprocal Best
SquirrelSpermophilus tridecemlineatusFeb. 2008speTri1*Reciprocal Best
SticklebackGasterosteus aculeatus\ Feb. 2006gasAcu1MAF Net
TarsierTarsier syrichtaAug. 2008tarSyr1*Reciprocal Best
TenrecEchinops telfairiJuly 2005echTel1*Reciprocal Best
TetraodonTetraodon nigroviridis\ Mar. 2007tetNig2MAF Net
Tree ShrewTupaia belangeriDec. 2006tupBel1*Reciprocal Best
WallabyMacropus eugeniiNov. 2007macEug1*Reciprocal Best
X. tropicalisXenopus tropicalis\ Aug. 2005xenTro2MAF Net
Zebra finchTaeniopygia guttata\ Jul. 2008taeGut1Syntenic Net
ZebrafishDanio rerio\ Dec. 2008danRer6MAF Net

\ Table 1. Genome assemblies included in the 46-way Conservation \ track.\
* Data download only, browser not available.\

\ \ Downloads for data in this track are available:\ \ \

Display Conventions and Configuration

\

\ The track configuration options allow the user to display either\ the vertebrate or placental mammal conservation scores, or both\ simultaneously.\ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the \ size of the score. \ The conservation wiggles can be configured in a variety of ways to \ highlight different aspects of the displayed information. \ Click the Graph configuration help link for an explanation \ of the configuration options.

\

\ Pairwise alignments of each species to the human genome are \ displayed below the conservation histogram as a grayscale density plot (in \ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation \ as scored by phastCons.

\

\ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display. \ Configuration buttons are available to select all of the species (Set \ all), deselect all of the species (Clear all), or \ use the default settings (Set defaults).\ By default, the following 11 species are included in the pairwise display:\ rhesus, mouse, dog, horse, \ armadillo, opossum, platypus, lizard, \ chicken, X. tropicalis (frog), and stickleback.\ Note that excluding species from the pairwise display does not alter the\ the conservation score display.

\

\ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.

\ \

Gap Annotation

\

\ The Display chains between alignments configuration option \ enables display of gaps between alignment blocks in the pairwise alignments in \ a manner similar to the Chain track display. The following\ conventions are used:\

    \
  • Single line: No bases in the aligned species. Possibly due to a\ lineage-specific insertion between the aligned blocks in the human genome\ or a lineage-specific deletion between the aligned blocks in the aligning\ species.\
  • Double line: Aligning species has one or more unalignable bases in\ the gap region. Possibly due to excessive evolutionary distance between \ species or independent indels in the region between the aligned blocks in both\ species. \
  • Pale yellow coloring: Aligning species has Ns in the gap region.\ Reflects uncertainty in the relationship between the DNA of both species, due\ to lack of sequence in relevant portions of the aligning species. \

\ \

Genomic Breaks

\

\ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows: \

    \
  • \ Vertical blue bar: Represents a discontinuity that persists indefinitely\ on either side, e.g. a large region of DNA on either side of the bar\ comes from a different chromosome in the aligned species due to a large scale\ rearrangement. \
  • \ Green square brackets: Enclose shorter alignments consisting of DNA from\ one genomic context in the aligned species nested inside a larger chain of\ alignments from a different genomic context. The alignment within the\ brackets may represent a short misalignment, a lineage-specific insertion of a\ transposon in the human genome that aligns to a paralogous copy somewhere\ else in the aligned species, or other similar occurrence.\

\ \

Base Level

\

\ When zoomed-in to the base-level display, the track shows the base \ composition of each alignment. \ The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those \ alignment positions relative to the longest non-human sequence. \ If there is sufficient space in the display, the size of the gap is shown. \ If the space is insufficient and the gap size is a multiple of 3, a \ "*" is displayed; other gap sizes are indicated by "+".

\

\ Codon translation is available in base-level display mode if the\ displayed region is identified as a coding segment. To display this annotation,\ select the species for translation from the pull-down menu in the Codon\ Translation configuration section at the top of the page. Then, select one of\ the following modes:\

    \
  • \ No codon translation: The gene annotation is not used; the bases are\ displayed without translation. \
  • \ Use default species reading frames for translation: The annotations from the genome\ displayed \ in the Default species to establish reading frame pull-down menu are used to\ translate all the aligned species present in the alignment. \
  • \ Use reading frames for species if available, otherwise no translation: Codon\ translation is performed only for those species where the region is\ annotated as protein coding.\
  • Use reading frames for species if available, otherwise use default species:\ Codon translation is done on those species that are annotated as being protein\ coding over the aligned region using species-specific annotation; the remaining\ species are translated using the default species annotation. \

\

\ Codon translation uses the following gene tracks as the basis for\ translation, depending on the species chosen (Table 2). \ Species listed in the row labeled "None" do not have \ species-specific reading frames for gene translation.\ \

\ \ \ \ \
Gene TrackSpecies
Known Geneshuman, mouse, rat
Ensembl Genes v55 alpaca, armadillo, bush baby, cat,\ chicken, chimp, cow, dog, dolphin, fugu, gorilla, guinea pig, hedgehog, horse,\ kangaroo rat, little brown bat, lizard, medaka, megabat, mouse, mouse lemur, opossum,\ orangutan, pika, platypus, rhesus, rock hyrax, shrew, sloth, squirrel,\ stickleback, tarsier, tenrec, tetraodon, tree shrew, X. tropicalis,\ zebra finch, zebrafish\
Xeno Ref Genesbaboon, elephant, lamprey, marmoset, rabbit, wallaby
\ Table 2. Gene tracks used for codon translation.\

\ \

Methods

\

\ Pairwise alignments with the human genome were generated for \ each species using blastz from repeat-masked genomic sequence. \ Pairwise alignments were then linked into chains using a dynamic programming\ algorithm that finds maximally scoring chains of gapless subsections\ of the alignments organized in a kd-tree.\ The scoring matrix and parameters for pairwise alignment and chaining\ were tuned for each species based on phylogenetic distance from the reference.\ High-scoring chains were then placed along the genome, with\ gaps filled by lower-scoring chains, to produce an alignment net.\ For more information about the chaining and netting process and \ parameters for each species, see the description pages for the Chain and Net \ tracks.

\

\ An additional filtering step was introduced in the generation of the 46-way\ conservation track to reduce the number of paralogs and pseudogenes from the \ high-quality assemblies and the suspect alignments from the low-quality \ assemblies:\ the pairwise alignments of high-quality mammalian \ sequences (placental and marsupial) were filtered based on synteny; \ those for 2X mammalian genomes were filtered to retain only \ alignments of best quality in both the target and query ("reciprocal \ best").

\

\ The resulting best-in-genome pairwise alignments\ were progressively aligned using multiz/autoMZ, \ following the tree topology diagrammed above, to produce multiple alignments.\ The multiple alignments were post-processed to\ add annotations indicating alignment gaps, genomic breaks,\ and base quality of the component sequences.\ The annotated multiple alignments, in MAF format, are available for\ bulk download.\ An alignment summary table containing an entry for each\ alignment block in each species was generated to improve\ track display performance at large scales.\ Framing tables were constructed to enable\ visualization of codons in the multiple alignment display.

\ \

Phylogenetic Tree Model

\

\ Both phastCons and phyloP are phylogenetic methods that rely on a tree\ model containing the tree topology,\ branch lengths representing evolutionary distance at neutrally\ evolving sites, the background distribution of nucleotides, and a substitution\ rate matrix. \ The \ vertebrate tree model for this track was\ generated using the phyloFit program from the PHAST package \ (REV model, EM algorithm, medium precision) using multiple alignments of \ 4-fold degenerate sites extracted from the 46way alignment\ (msa_view). The 4d sites were derived from the RefSeq (Reviewed+Coding) gene set,\ filtered to select single-coverage long transcripts. The \ placental mammal tree model\ and \ primate tree model\ were extracted from the vertebrate model.\

\

PhastCons Conservation

\

\ The phastCons program computes conservation scores based on a phylo-HMM, a\ type of probabilistic model that describes both the process of DNA\ substitution at each site in a genome and the way this process changes from\ one site to the next (Felsenstein and Churchill 1996, Yang 1995, Siepel and\ Haussler 2005). PhastCons uses a two-state phylo-HMM, with a state for\ conserved regions and a state for non-conserved regions. The value plotted\ at each site is the posterior probability that the corresponding alignment\ column was "generated" by the conserved state of the phylo-HMM. These\ scores reflect the phylogeny (including branch lengths) of the species in\ question, a continuous-time Markov model of the nucleotide substitution\ process, and a tendency for conservation levels to be autocorrelated along\ the genome (i.e., to be similar at adjacent sites). The general reversible\ (REV) substitution model was used. Unlike many conservation-scoring programs, \ phastCons does not rely on a sliding window\ of fixed size; therefore, short highly-conserved regions and long moderately\ conserved regions can both obtain high scores. \ More information about\ phastCons can be found in Siepel et al. 2005.

\

\ The phastCons parameters were\ tuned to produce 5% conserved elements in the genome for the vertebrate\ conservation measurement. This parameter set (expected-length=45, \ target-coverage=.3, rho=.31) was then used to generate the placental\ mammal and primate conservation scoring.

\ \

PhyloP Conservation

\

\ The phyloP program supports several different methods for computing\ p-values of conservation or acceleration, for individual nucleotides or\ larger elements (http://compgen.cshl.edu/phast/). Here it was used\ to produce separate scores at each base (--wig-scores option), considering\ all branches of the phylogeny rather than a particular subtree or lineage\ (i.e., the --subtree option was not used). The scores were computed by\ performing a likelihood ratio test at each alignment column (--method LRT),\ and scores for both conservation and acceleration were produced (--mode\ CONACC). \

\

Conserved Elements

\

\ The conserved elements were predicted by running phastCons with the\ --viterbi option. The predicted elements are segments of the alignment\ that are likely to have been "generated" by the conserved state of the\ phylo-HMM. Each element is assigned a log-odds score equal to its log\ probability under the conserved model minus its log probability under the\ non-conserved model. The "score" field associated with this track contains\ transformed log-odds scores, taking values between 0 and 1000. (The scores\ are transformed using a monotonic function of the form a * log(x) + b.) The\ raw log odds scores are retained in the "name" field and can be seen on the\ details page or in the browser when the track's display mode is set to\ "pack" or "full".\

\ \

Credits

\

This track was created using the following programs:\

    \
  • Alignment tools: blastz and multiz by Minmei Hou, Scott Schwartz and Webb \ Miller of the Penn State Bioinformatics Group\
  • Chaining and Netting: axtChain, chainNet by Jim Kent at UCSC\
  • Conservation scoring: phastCons, phyloP, phyloFit, tree_doctor, msa_view and\ other programs in PHAST by \ Adam Siepel at Cold Spring Harbor Laboratory (original development\ done at the Haussler lab at UCSC).\
  • MAF Annotation tools: mafAddIRows by Brian Raney, UCSC; mafAddQRows\ by Richard Burhans, Penn State; genePredToMafFrames by Mark Diekhans, UCSC\
  • Tree image generator: phyloPng by Galt Barber, UCSC\
  • Conservation track display: Kate Rosenbloom, Hiram Clawson (wiggle \ display), and Brian Raney (gap annotation and codon framing) at UCSC\
\

\

The phylogenetic tree is based on Murphy et al. (2001) and general \ consensus in the vertebrate phylogeny community as of March 2007.\

\ \

References

\ \

Phylo-HMMs, phastCons, and phyloP:

\

\ Felsenstein J, Churchill GA.\ A Hidden Markov Model approach to\ variation among sites in rate of evolution.\ Mol Biol Evol. 1996 Jan;13(1):93-104.\ PMID: 8583911\

\ \

\ Pollard KS, Hubisz MJ, Rosenbloom KR, Siepel A.\ \ Detection of nonneutral substitution rates on mammalian phylogenies.\ Genome Res. 2010 Jan;20(1):110-21.\ PMID: 19858363; PMC: PMC2798823\

\ \

\ Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K,\ Clawson H, Spieth J, Hillier LW, Richards S, et al.\ Evolutionarily conserved elements in vertebrate, insect, worm,\ and yeast genomes.\ Genome Res. 2005 Aug;15(8):1034-50.\ PMID: 16024819; PMC: PMC1182216\

\ \

\ Siepel A, Haussler D.\ Phylogenetic Hidden Markov Models.\ In: Nielsen R, editor. Statistical Methods in Molecular Evolution.\ New York: Springer; 2005. pp. 325-351.\

\ \

\ Yang Z.\ A space-time process model for the evolution of DNA\ sequences.\ Genetics. 1995 Feb;139(2):993-1005.\ PMID: 7713447; PMC: PMC1206396\

\ \

Chain/Net:

\

\ Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\ Evolution's cauldron:\ duplication, deletion, and rearrangement in the mouse and human genomes.\ Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\ PMID: 14500911; PMC: PMC208784\

\ \

Multiz:

\

\ Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, Roskin KM,\ Baertsch R, Rosenbloom K, Clawson H, Green ED, et al.\ Aligning multiple genomic sequences with the threaded blockset aligner.\ Genome Res. 2004 Apr;14(4):708-15.\ PMID: 15060014; PMC: PMC383317\

\ \

\ Harris RS.\ Improved pairwise alignment of genomic DNA.\ Ph.D. Thesis. Pennsylvania State University, USA. 2007.\

\ \

Blastz:

\

\ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput. 2002:115-26.\ PMID: 11928468\

\ \

\ Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC,\ Haussler D, Miller W.\ Human-mouse alignments with BLASTZ.\ Genome Res. 2003 Jan;13(1):103-7.\ PMID: 12529312; PMC: PMC430961\

\ \ \

Phylogenetic Tree:

\

\ Murphy WJ, Eizirik E, O'Brien SJ, Madsen O, Scally M, Douady CJ, Teeling E,\ Ryder OA, Stanhope MJ, de Jong WW, Springer MS.\ Resolution of the early placental mammal radiation using Bayesian phylogenetics.\ Science. 2001 Dec 14;294(5550):2348-51.\ PMID: 11743200\

\ compGeno 1 compositeTrack on\ dimensions dimensionX=clade\ dragAndDrop subTracks\ group compGeno\ longLabel Vertebrate Multiz Alignment & Conservation (46 Species)\ priority 2\ shortLabel Cons 46-Way\ subGroup1 view Views align=Multiz_Alignments phyloP=Basewise_Conservation_(phyloP) phastcons=Element_Conservation_(phastCons) elements=Conserved_Elements\ subGroup2 clade Clade primate=Primate mammal=Mammal vert=Vertebrate\ track cons46way\ type bed 4\ visibility hide\ cons46wayViewelements Conserved Elements bed 4 Vertebrate Multiz Alignment & Conservation (46 Species) 0 2 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Vertebrate Multiz Alignment & Conservation (46 Species)\ parent cons46way\ shortLabel Conserved Elements\ track cons46wayViewelements\ view elements\ visibility hide\ cnvDevDelayControl Control gvf Copy Number Variation Morbidity Map of Developmental Delay - Control 3 2 0 0 0 127 127 127 0 0 0 phenDis 1 longLabel Copy Number Variation Morbidity Map of Developmental Delay - Control\ parent cnvDevDelay on\ priority 2\ shortLabel Control\ track cnvDevDelayControl\ type gvf\ visibility pack\ affyExonProbeCore Core Probes bed 10 Affymetrix Human Exon Array Core Probes 1 2 65 105 225 160 180 240 0 0 0 expression 1 color 65,105,225\ longLabel Affymetrix Human Exon Array Core Probes\ parent affyExonProbe off\ shortLabel Core Probes\ subGroups view=v2Probe level=L1Core\ track affyExonProbeCore\ type bed 10\ covidHgiGwasR4Pval COVID GWAS v4 bigLolly 9 + COVID risk variants from GWAS meta-analyses by the COVID-19 Host Genetics Initiative (Rel 4, Oct 2020) 0 2 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,

Description

\

\ This track set shows the results of the\ GWAS Data Release 4 (October 2020) \ from the \ \ COVID-19 Host Genetics Initiative (HGI): \ a collaborative effort to facilitate \ the generation of meta-analysis across multiple studies contributed by\ partners world-wide\ to identify the genetic determinants of SARS-CoV-2 infection susceptibility, disease severity \ and outcomes. The COVID-19 HGI also aims to provide a platform for study partners to \ share analytical results in the form of summary statistics and/or individual level data of COVID-19\ host genetics research. At the time of this release, a total of 137 studies were registered with \ this effort.\

\ \

\ The specific phenotypes studied by the COVID-19 HGI are those that benefit from maximal sample \ size: primary analysis on disease severity. For the Data Release 4 the number of cases have\ increased by nearly ten-fold (more than 30,000 COVID-19 cases and 1.47 million controls) by combining\ data from 34 studies across 16 countries. \

\ \

\ The four tracks here are based on data from HGI meta-analyses A2, B2, C1, and C2, described here:\

\ \ \ \ Due to privacy concerns, these browser tracks exclude data provided by 23andMe contributed\ studies in the full analysis results. The actual study and case \ and control counts for the individual browser tracks are listed in the track labels. Details on \ all studies can be found here.\ \

Display Conventions

\

\ Displayed items are colored by GWAS effect: red for positive (harmful) effect, \ blue for negative (protective) effect.\ The height ('lollipop stem') of the item is based on statistical significance (p-value). \ For better visualization of the data, only SNPs with p-values smaller than 1e-3 are \ displayed by default.

\

\ The color saturation indicates effect size (beta coefficient): values over the median of effect \ size are brightly colored (bright red\   \ , bright blue\   \ ),\ those below the median are paler (light red\   \ , light blue\   \ ). \

\

\ Each track has separate display controls and data can be filtered according to the\ number of studies, minimum -log10 p-value, and the\ effect size (beta coefficient), using the track Configure options.

\

\ Mouseover on items shows the rs ID (or chrom:pos if none assigned), both the non-effect \ and effect alleles, the effect size (beta coefficient), the p-value, and the number of \ studies.\ Additional information on each variant can be found on the details page by clicking on \ the item.

\ \

Methods

\

\ COVID-19 Host Genetics Initiative (HGI) GWAS meta-analysis round 4 (October 2020) results were \ used in this study. \ Each participating study partner submitted GWAS summary statistics for up to four \ of the COVID-19 phenotype definitions.

\

\ Data were generated from genome-wide SNP array and whole exome and genome\ sequencing, leveraging the impact of both common and rare variants. The statistical analysis\ performed takes into account differences between sex, ancestry, and date of sample collection. \ Alleles were harmonized across studies and reported allele frequencies are based on gnomAD \ version 3.0 reference data. Most study partners used the SAIGE GWAS pipeline in order \ to generate summary statistics used for the COVID-19 HGI meta-analysis. The summary statistics \ of individual studies were manually examined for inflation, \ deflation, and excessive number of false positives. \ Qualifying summary statistics were filtered for \ INFO > 0.6 and MAF > 0.0001 prior to meta-analyzing the entirety of the data. \

\ The meta-analysis was performed using fixed effects inverse variance weighting.\ The meta-analysis software and workflow are available here. More information about the \ prospective studies, processing pipeline, results and data sharing can be found \ here.\

\ \

Data Access

\

\ The data underlying these tracks and summary statistics results are publicly available in COVID19-hg Release 4 (October 2020).\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. \ Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.\

\ \

Credits

\

\ Thanks to the COVID-19 Host Genetics Initiative contributors and project leads for making these \ data available, and in particular to Rachel Liao, Juha Karjalainen, and Kumar Veerapen at the \ Broad Institute for their review and input during browser track development.\

\ \

References

\ \

\ COVID-19 Host Genetics Initiative.\ \ The COVID-19 Host Genetics Initiative, a global initiative to elucidate the role of host genetic\ factors in susceptibility and severity of the SARS-CoV-2 virus pandemic.\ Eur J Hum Genet. 2020 Jun;28(6):715-718.\ PMID: 32404885; PMC: PMC7220587\

\ \

\ Pairo-Castineira E, Clohisey S, Klaric L, Bretherick AD, Rawlik K, Pasko D, Walker S, Parkinson N,\ Fourman MH, Russell CD et al.\ \ Genetic mechanisms of critical illness in Covid-19.\ Nature. 2020 Dec 11;.\ PMID: 33307546\

\ \ \ varRep 1 autoScale on\ bedNameLabel SNP\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22\ compositeTrack on\ filter._effectSizeAbs 0\ filter.effectSize -1.6:2.2\ filter.pValueLog 3\ filter.sourceCount 1\ filterByRange.effectSize on\ filterLabel._effectSizeAbs Minimum effect size +-\ filterLabel.effectSize Effect size range\ filterLabel.sourceCount Minimum number of studies\ filterLimits.effectSize -1.6:2.2\ group varRep\ lollyField 13\ longLabel COVID risk variants from GWAS meta-analyses by the COVID-19 Host Genetics Initiative (Rel 4, Oct 2020)\ maxHeightPixels 48:75:128\ maxItems 500000\ mouseOver $name $ref/$alt effect $effectSize pVal $pValue studies $sourceCount\ noScoreFilter on\ priority 2\ shortLabel COVID GWAS v4\ track covidHgiGwasR4Pval\ type bigLolly 9 +\ viewLimits 0:10\ visibility hide\ wgEncodeCrgMapabilityAlign36mer CRG Align 36 bigWig 0.00 1.00 Alignability of 36mers by GEM from ENCODE/CRG(Guigo) 0 2 0 100 0 127 177 127 0 0 0 map 1 color 0,100,0\ longLabel Alignability of 36mers by GEM from ENCODE/CRG(Guigo)\ origAssembly hg19\ parent wgEncodeMapabilityViewCRGMAP\ shortLabel CRG Align 36\ subGroups view=CRGMAP win=w036 lab=CRG\ track wgEncodeCrgMapabilityAlign36mer\ type bigWig 0.00 1.00\ dbSnp153ClinVar dbSNP(153) in ClinVar bigDbSnp Short Genetic Variants from dbSNP Release 153 Included in ClinVar 1 2 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg19/snp/dbSnp153ClinVar.bb\ defaultGeneTracks knownGene\ longLabel Short Genetic Variants from dbSNP Release 153 Included in ClinVar\ parent dbSnp153ViewVariants off\ priority 2\ shortLabel dbSNP(153) in ClinVar\ subGroups view=variants\ track dbSnp153ClinVar\ dbVar_common_african dbVar Curated African SVs bigBed 9 + . NCBI dbVar Curated Common SVs: African 3 2 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg19/bbi/dbVar/common_african.bb\ longLabel NCBI dbVar Curated Common SVs: African\ parent dbVar_common on\ shortLabel dbVar Curated African SVs\ track dbVar_common_african\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ dgvSupporting DGV Supp Var bigBed 9 + Database of Genomic Variants: Supporting Structural Var (CNV, Inversion, In/del) 0 2 0 0 0 127 127 127 0 0 0 http://dgv.tcag.ca/dgv/app/variant?id=$$&ref=$D varRep 1 bigDataUrl /gbdb/hg19/dgv/dgvSupporting.bb\ dataVersion 2020-02-25\ filter._size 1:9320633\ filterByRange._size on\ filterLabel._size Genomic size of variant\ filterValues.varType complex,deletion,duplication,gain,gain+loss,insertion,inversion,loss,mobile element insertion,novel sequence insertion,sequence alteration,tandem duplication\ longLabel Database of Genomic Variants: Supporting Structural Var (CNV, Inversion, In/del)\ mouseOver ID:$name; Position; $chrom:${chromStart}-${chromEnd}; Size:$_size; Type:$varType; Affected genes:$genes\ parent dgvPlus\ priority 2\ searchIndex name\ shortLabel DGV Supp Var\ track dgvSupporting\ type bigBed 9 +\ eioJcviNASNeg EIO/JCVI CD34- NAS bed 3 . CD34- cells Nuclease Accessible Sites 0 2 100 30 250 177 142 252 0 0 0 regulation 1 color 100,30,250\ longLabel CD34- cells Nuclease Accessible Sites\ parent eioJcviNAS\ priority 2\ shortLabel EIO/JCVI CD34- NAS\ track eioJcviNASNeg\ cons46wayViewphastcons Element Conservation (phastCons) bed 4 Vertebrate Multiz Alignment & Conservation (46 Species) 0 2 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Vertebrate Multiz Alignment & Conservation (46 Species)\ parent cons46way\ shortLabel Element Conservation (phastCons)\ track cons46wayViewphastcons\ view phastcons\ visibility hide\ encBlacklist ENCODE Blacklist V2 bigBed 4 ENCODE Blacklist V2 1 2 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/bbi/problematic/encBlacklist.bb\ longLabel ENCODE Blacklist V2\ parent problematic\ priority 2\ shortLabel ENCODE Blacklist V2\ track encBlacklist\ type bigBed 4\ visibility dense\ exacVariants ExAC Variants vcfTabix Exome Aggregation Consortium (ExAC) - Variants from 60,706 Exomes 0 2 0 0 0 127 127 127 0 0 83 chr1,chr10,chr11,chr11_gl000202_random,chr12,chr13,chr14,chr15,chr16,chr17,chr17_gl000203_random,chr17_gl000204_random,chr17_gl000205_random,chr17_gl000206_random,chr18,chr18_gl000207_random,chr19,chr19_gl000208_random,chr19_gl000209_random,chr1_gl000191_random,chr1_gl000192_random,chr2,chr20,chr21,chr21_gl000210_random,chr22,chr3,chr4,chr4_gl000193_random,chr4_gl000194_random,chr5,chr6,chr7,chr7_gl000195_random,chr8,chr8_gl000196_random,chr8_gl000197_random,chr9,chr9_gl000198_random,chr9_gl000199_random,chr9_gl000200_random,chr9_gl000201_random,chrUn_gl000211,chrUn_gl000212,chrUn_gl000213,chrUn_gl000214,chrUn_gl000215,chrUn_gl000216,chrUn_gl000217,chrUn_gl000218,chrUn_gl000219,chrUn_gl000220,chrUn_gl000221,chrUn_gl000222,chrUn_gl000223,chrUn_gl000224,chrUn_gl000225,chrUn_gl000226,chrUn_gl000227,chrUn_gl000228,chrUn_gl000229,chrUn_gl000230,chrUn_gl000231,chrUn_gl000232,chrUn_gl000233,chrUn_gl000234,chrUn_gl000235,chrUn_gl000236,chrUn_gl000237,chrUn_gl000238,chrUn_gl000239,chrUn_gl000240,chrUn_gl000241,chrUn_gl000242,chrUn_gl000243,chrUn_gl000244,chrUn_gl000245,chrUn_gl000246,chrUn_gl000247,chrUn_gl000248,chrUn_gl000249,chrX,chrY, http://gnomad.broadinstitute.org/variant/$s-$-$-$?dataset=exac&ignore=$$ varRep 1 bigDataUrl /gbdb/hg19/ExAC/ExAC.r0.3.sites.vep.hg19.vcf.gz\ chromosomes chr1,chr10,chr11,chr11_gl000202_random,chr12,chr13,chr14,chr15,chr16,chr17,chr17_gl000203_random,chr17_gl000204_random,chr17_gl000205_random,chr17_gl000206_random,chr18,chr18_gl000207_random,chr19,chr19_gl000208_random,chr19_gl000209_random,chr1_gl000191_random,chr1_gl000192_random,chr2,chr20,chr21,chr21_gl000210_random,chr22,chr3,chr4,chr4_gl000193_random,chr4_gl000194_random,chr5,chr6,chr7,chr7_gl000195_random,chr8,chr8_gl000196_random,chr8_gl000197_random,chr9,chr9_gl000198_random,chr9_gl000199_random,chr9_gl000200_random,chr9_gl000201_random,chrUn_gl000211,chrUn_gl000212,chrUn_gl000213,chrUn_gl000214,chrUn_gl000215,chrUn_gl000216,chrUn_gl000217,chrUn_gl000218,chrUn_gl000219,chrUn_gl000220,chrUn_gl000221,chrUn_gl000222,chrUn_gl000223,chrUn_gl000224,chrUn_gl000225,chrUn_gl000226,chrUn_gl000227,chrUn_gl000228,chrUn_gl000229,chrUn_gl000230,chrUn_gl000231,chrUn_gl000232,chrUn_gl000233,chrUn_gl000234,chrUn_gl000235,chrUn_gl000236,chrUn_gl000237,chrUn_gl000238,chrUn_gl000239,chrUn_gl000240,chrUn_gl000241,chrUn_gl000242,chrUn_gl000243,chrUn_gl000244,chrUn_gl000245,chrUn_gl000246,chrUn_gl000247,chrUn_gl000248,chrUn_gl000249,chrX,chrY\ configureByPopup off\ group varRep\ longLabel Exome Aggregation Consortium (ExAC) - Variants from 60,706 Exomes\ maxWindowToDraw 5000000\ parent exac\ shortLabel ExAC Variants\ showHardyWeinberg on\ track exacVariants\ type vcfTabix\ url http://gnomad.broadinstitute.org/variant/$s-$-$-$?dataset=exac&ignore=$$\ urlLabel ExAC:\ visibility hide\ dhcHumDerDenAncAllFixedDbSnp FxS bigBed 4 + Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: All 3 2 0 0 0 127 127 127 0 0 0 denisova 1 color 0,0,0\ longLabel Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: All\ parent dhcHumDerDenAncAll\ shortLabel FxS\ subGroups view=All subset=All freq=FixedDbSnp\ track dhcHumDerDenAncAllFixedDbSnp\ geneHancerGenesDoubleElite GH genes TSS (DE) bigBed 9 GeneCards genes TSS (Double Elite) 3 2 0 0 0 127 127 127 0 0 0 http://www.genecards.org/cgi-bin/carddisp.pl?gene=$$ regulation 1 bigDataUrl /gbdb/hg19/geneHancer/geneHancerGenesTssDoubleElite.hg19.bb\ longLabel GeneCards genes TSS (Double Elite)\ parent ghGeneTss on\ shortLabel GH genes TSS (DE)\ subGroups set=a_ELITE view=b_TSS\ track geneHancerGenesDoubleElite\ type bigBed 9\ wgEncodeGisRnaSeqGm12878CytosolPapMinusRawRep1 GM12 cyto pA+ - 1 bigWig 1.000000 13939.000000 GM12878 cytosol polyA+ RNA-seq Minus raw signal rep 1 from ENCODE/GIS 2 2 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 cytosol polyA+ RNA-seq Minus raw signal rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaSeqViewMinusRawSignal on\ shortLabel GM12 cyto pA+ - 1\ subGroups view=MinusRawSignal cellType=t1GM12878 rnaExtract=longPolyA rep=rep1 localization=cytosol\ track wgEncodeGisRnaSeqGm12878CytosolPapMinusRawRep1\ type bigWig 1.000000 13939.000000\ wgEncodeGisRnaPetGm12878CytosolPapMinusRawRep1V2 GM12 cyto pA+ - b bigWig 1.000000 1740170.000000 GM12878 cytosol polyA+ clone-based RNA PET Minus signal Rep 1 from ENCODE/GIS 2 2 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 cytosol polyA+ clone-based RNA PET Minus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel GM12 cyto pA+ - b\ subGroups view=v2MinusRawSignal cellType=aGM12878 cloned=Based localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetGm12878CytosolPapMinusRawRep1V2\ type bigWig 1.000000 1740170.000000\ wgEncodeDukeAffyExonGm12878SimpleSignalRep2V2 GM12878 2 bigBed 6 + GM12878 Exon array Signal Rep 2 from ENCODE/Duke 0 2 153 38 0 204 146 127 1 0 0 expression 1 color 153,38,0\ longLabel GM12878 Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon\ shortLabel GM12878 2\ subGroups cellType=t1GM12878 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonGm12878SimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeHaibGenotypeGm12878RegionsRep2 GM12878 2 bed 9 + GM12878 Copy number variants Replicate 2 from ENCODE/HAIB 0 2 0 0 0 127 127 127 0 0 0 varRep 1 longLabel GM12878 Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel GM12878 2\ subGroups cellType=t1GM12878 obtainedBy=HudsonAlpha treatment=None rep=rep2\ track wgEncodeHaibGenotypeGm12878RegionsRep2\ type bed 9 +\ wgEncodeHaibMethylRrbsGm12878HaibSitesRep2 GM12878 2 bed 9 + GM12878 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 2 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel GM12878 2\ subGroups cellType=t1GM12878 obtainedBy=HAIB treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsGm12878HaibSitesRep2\ type bed 9 +\ wgEncodeGisDnaPetGm12878F5kAln GM12878 5k bam ENCODE GIS DNA PET Alignments (5k frags in GM12878 cells) 1 2 153 38 0 204 146 127 0 0 0 varRep 1 color 153,38,0\ longLabel ENCODE GIS DNA PET Alignments (5k frags in GM12878 cells)\ parent wgEncodeGisDnaPetViewAlignments off\ shortLabel GM12878 5k\ subGroups cellType=t1GM12878 fragSize=b5K\ track wgEncodeGisDnaPetGm12878F5kAln\ wgEncodeAwgTfbsHaibGm12878Atf3Pcr1xUniPk GM12878 ATF3 narrowPeak GM12878 TFBS Uniform Peaks of ATF3 from ENCODE/HudsonAlpha/Analysis 1 2 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of ATF3 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 ATF3\ subGroups tier=a10 cellType=a10GM12878 factor=ATF3 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Atf3Pcr1xUniPk\ wgEncodeUncBsuProtGencGm12878CellIngelmPepMapGcFt GM12878 Ce PTM bigBed 12 GM12878 In-gel ProtG GENCODE11 Hg19 PTM Mapping from ENCODE/UNC/BSU 2 2 153 38 0 204 146 127 1 0 0 expression 1 color 153,38,0\ longLabel GM12878 In-gel ProtG GENCODE11 Hg19 PTM Mapping from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtGencViewmPepMapGcFt\ shortLabel GM12878 Ce PTM\ subGroups view=mPepMapGcFt cellType=GM12878 localization=CELL protocol=INGEL\ track wgEncodeUncBsuProtGencGm12878CellIngelmPepMapGcFt\ type bigBed 12\ wgEncodeOpenChromChipGm12878CmycSig GM12878 cMyc DS bigWig 0.000000 0.750000 GM12878 cMyc TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 2 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 cMyc TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal\ shortLabel GM12878 cMyc DS\ subGroups treatment=AANONE view=SIG factor=CMYC cellType=t1GM12878\ track wgEncodeOpenChromChipGm12878CmycSig\ type bigWig 0.000000 0.750000\ wgEncodeAwgSegmentationCombinedGm12878 GM12878 Combined bed 9 . GM12878 Genome Segmentation by Combined Segway+ChromHMM from ENCODE/Analysis 0 2 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12878 Genome Segmentation by Combined Segway+ChromHMM from ENCODE/Analysis\ parent wgEncodeAwgSegmentation on\ shortLabel GM12878 Combined\ subGroups tier=t1 cellType=t1GM12878 method=Combined\ track wgEncodeAwgSegmentationCombinedGm12878\ type bed 9 .\ wgEncodeBroadHistoneGm12878CtcfStdSig GM12878 CTCF bigWig 0.040000 16386.560547 GM12878 CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 2 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel GM12878 CTCF\ subGroups view=Signal factor=CTCF cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878CtcfStdSig\ type bigWig 0.040000 16386.560547\ wgEncodeAffyRnaChipFiltTransfragsGm12878CytosolLongnonpolya GM12878 cyto pA- broadPeak GM12878 cytosol polyA- Microarray Transfrags from ENCODE Affy/CSHL 3 2 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA- Microarray Transfrags from ENCODE Affy/CSHL\ parent wgEncodeAffyRnaChipViewFiltTransfrags\ shortLabel GM12878 cyto pA-\ subGroups view=FiltTransfrags cellType=t1GM12878 localization=bCYTOSOL rnaExtract=longNonPolyA\ track wgEncodeAffyRnaChipFiltTransfragsGm12878CytosolLongnonpolya\ type broadPeak\ wgEncodeOpenChromDnaseGm12878Sig GM12878 DS bigWig 0.000000 1.097700 GM12878 DNaseI HS Density Signal from ENCODE/Duke 2 2 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal\ shortLabel GM12878 DS\ subGroups view=SIG cellType=t1GM12878 treatment=zNONE\ track wgEncodeOpenChromDnaseGm12878Sig\ type bigWig 0.000000 1.097700\ wgEncodeSunyAlbanyGeneStGm12878Elavl1RbpAssocRnaV2 GM12878 ELAVL1 broadPeak GM12878 ELAVL1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 2 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ELAVL1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt\ shortLabel GM12878 ELAVL1\ subGroups cellType=t1GM12878 factor=ELAVL1\ track wgEncodeSunyAlbanyGeneStGm12878Elavl1RbpAssocRnaV2\ type broadPeak\ wgEncodeSunyRipSeqGm12878Elavl1AlnRep2 GM12878 ELAVL1 2 bam GM12878 ELAVL1 RIP-seq Alignments Rep 2 from ENCODE/SUNY 0 2 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ELAVL1 RIP-seq Alignments Rep 2 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewAlignments off\ shortLabel GM12878 ELAVL1 2\ subGroups view=Alignments factor=ELAVL1 cellType=t1GM12878 rep=rep2\ track wgEncodeSunyRipSeqGm12878Elavl1AlnRep2\ type bam\ wgEncodeOpenChromFaireGm12878Sig GM12878 FAIRE DS bigWig 0.000000 0.559800 GM12878 FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 2 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal\ shortLabel GM12878 FAIRE DS\ subGroups view=SIG cellType=t1GM12878 treatment=AANONE\ track wgEncodeOpenChromFaireGm12878Sig\ type bigWig 0.000000 0.559800\ wgEncodeUncBsuProtGm12878MitoSig GM12878 mito peptideMapping GM12878 Mitochondria Proteogenomic Hg19 Mapping Hits from ENCODE/UNC/BSU 2 2 153 38 0 204 146 127 1 0 0 expression 1 color 153,38,0\ longLabel GM12878 Mitochondria Proteogenomic Hg19 Mapping Hits from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtViewSignal\ shortLabel GM12878 mito\ subGroups view=Signal cellType=t1GM12878 localization=mito protocol=INGEL\ track wgEncodeUncBsuProtGm12878MitoSig\ type peptideMapping\ visibility full\ wgEncodeSunyAlbanyTilingGm12878Pabpc1RbpAssocRna GM12878 PABPC1 broadPeak GM12878 PABPC1 RBP Associated RNA by Tiling Array from ENCODE/SUNY 3 2 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 PABPC1 RBP Associated RNA by Tiling Array from ENCODE/SUNY\ parent wgEncodeSunyAlbanyTilingView\ shortLabel GM12878 PABPC1\ subGroups view=RbpAssocRna cellType=t1GM12878 antibody=PABPC1\ track wgEncodeSunyAlbanyTilingGm12878Pabpc1RbpAssocRna\ type broadPeak\ wgEncodeUwDnaseGm12878PkRep1 GM12878 Pk 1 narrowPeak GM12878 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 2 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks\ shortLabel GM12878 Pk 1\ subGroups view=Peaks cellType=t1GM12878 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm12878PkRep1\ type narrowPeak\ wgEncodeUwRepliSeqGm12878S1PctSignalRep1 GM12878 S1 1 bigWig 1.000000 100.000000 GM12878 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 2 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel GM12878 S1 1\ subGroups view=v1PctSignal cellType=t1GM12878 phase=p2S1 rep=rep1\ track wgEncodeUwRepliSeqGm12878S1PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeCaltechRnaSeqGm12878R2x75Il200AlignsRep2V2 GM78 2x75 A 2 bam GM12878 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 2 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel GM78 2x75 A 2\ subGroups view=Aligns cellType=t1GM12878 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12878R2x75Il200AlignsRep2V2\ type bam\ wgEncodeHaibTfbsGm12878Atf2sc81188V0422111RawRep1 GM78 ATF2 V11 1 bigWig 0.161893 158.330994 GM12878 ATF2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 2 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ATF2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 ATF2 V11 1\ subGroups view=RawSignal factor=ATF2SC81188 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Atf2sc81188V0422111RawRep1\ type bigWig 0.161893 158.330994\ wgEncodeSydhTfbsGm12878Bhlhe40cIggmusSig GM78 BHL4 IgM bigWig 1.000000 8856.000000 GM12878 BHLHE40 NB100 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 2 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 BHLHE40 NB100 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 BHL4 IgM\ subGroups view=Signal factor=BHLHE40NB100 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Bhlhe40cIggmusSig\ type bigWig 1.000000 8856.000000\ wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaAlnRep2 GM78 cel pA- A 2 bam GM12878 whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 2 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel GM78 cel pA- A 2\ subGroups view=Alignments cellType=t1GM12878 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaAlnRep2\ type bam\ wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapMinusRawRep1 GM78 cell TAP - 1 bigWig 1.000000 3646991.000000 GM12878 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 2 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal on\ shortLabel GM78 cell TAP - 1\ subGroups view=MinusSignal cellType=t1GM12878 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapMinusRawRep1\ type bigWig 1.000000 3646991.000000\ wgEncodeUwTfbsGm12878CtcfStdPkRep1 GM78 CTCF Pk 1 narrowPeak GM12878 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 2 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks on\ shortLabel GM78 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t1GM12878 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12878CtcfStdPkRep1\ type narrowPeak\ wgEncodeRikenCageGm12878CytosolPamPlusSignal GM78 cyto pA- + 1 bigWig 0.040000 4464.319824 GM12878 cytosol polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 2 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 cytosol polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel GM78 cyto pA- + 1\ subGroups view=PlusRawSignal cellType=t1GM12878 localization=cytosol rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageGm12878CytosolPamPlusSignal\ type bigWig 0.040000 4464.319824\ wgEncodeUwHistoneGm12878H3k4me3StdPkRep1 GM78 H3K4M3 Pk 1 narrowPeak GM12878 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 2 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks on\ shortLabel GM78 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t1GM12878 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12878H3k4me3StdPkRep1\ type narrowPeak\ gnomadSvControls gnomAD Control Only SV's bigBed 9 + gnomAD Structural Variants Controls Only 1 2 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/variant/$$?dataset=gnomad_sv_r2_1 varRep 1 bigDataUrl /gbdb/hg19/gnomAD/structuralVariants/gnomad_v2.1_sv.controls_only.sites.bb\ filter.svlen 50:199840172\ filterByRange.svlen on\ filterLabel.svlen Filter by Variant Size\ filterLabel.svtype Type of Variation\ filterValues.svtype BND|Breakend,CPX|Complex,CTX|Translocation,DEL|Deletion,DUP|Duplication,INS|Insertion,INV|Inversion,MCNV|Multi-allele CNV\ itemRgb on\ longLabel gnomAD Structural Variants Controls Only\ mouseOverField _mouseOver\ parent gnomadStructuralVariants off\ searchIndex name\ shortLabel gnomAD Control Only SV's\ track gnomadSvControls\ type bigBed 9 +\ url https://gnomad.broadinstitute.org/variant/$$?dataset=gnomad_sv_r2_1\ urlLabel gnomAD Structural Variant Browser\ missenseByGene gnomAD Gene Missense Constraint bigBed 12 + gnomAD Predicted Missense Constraint Metrics By Gene (Z-scores) v2.1.1 3 2 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/gene/$$?dataset=gnomad_r2_1 varRep 1 bigDataUrl /gbdb/hg19/gnomAD/missense/missenseByGene.bb\ filter._zscore -10:10\ filterByRange._zscore on\ filterLabel._zscore Show only items between this Z-score range\ itemRgb on\ labelFields name,geneName\ longLabel gnomAD Predicted Missense Constraint Metrics By Gene (Z-scores) v2.1.1\ mouseOverField _mouseOver\ parent gnomadPLI off\ priority 2\ searchIndex name,geneName\ shortLabel gnomAD Gene Missense Constraint\ track missenseByGene\ type bigBed 12 +\ url https://gnomad.broadinstitute.org/gene/$$?dataset=gnomad_r2_1\ urlLabel View this Gene on the gnomAD browser\ pliByTranscript gnomAD Transcript LoF Constraint bigBed 12 + gnomAD Predicted Loss of Function Constraint Metrics By Transcript (pLI) v2.1.1 3 2 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r2_1 varRep 1 bigDataUrl /gbdb/hg19/gnomAD/pLI/pliByTranscript.bb\ filter._pli 0:1\ filterByRange._pli on\ filterLabel._pli Show only items between this pLI range\ itemRgb on\ labelFields name,geneName\ longLabel gnomAD Predicted Loss of Function Constraint Metrics By Transcript (pLI) v2.1.1\ mouseOverField _mouseOver\ parent gnomadPLI off\ priority 2\ searchIndex name,geneName\ shortLabel gnomAD Transcript LoF Constraint\ track pliByTranscript\ type bigBed 12 +\ url https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r2_1\ urlLabel View this Transcript on the gnomAD browser\ missenseByTranscript gnomAD Transcript Missense Constraint bigBed 12 + gnomAD Predicted Missense Constraint Metrics By Transcript (Z-scores) v2.1.1 3 2 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r2_1 varRep 1 bigDataUrl /gbdb/hg19/gnomAD/missense/missenseByTranscript.bb\ filter._zscore -10:10\ filterByRange._zscore on\ filterLabel._zscore Show only items between this Z-score range\ itemRgb on\ labelFields name,geneName\ longLabel gnomAD Predicted Missense Constraint Metrics By Transcript (Z-scores) v2.1.1\ mouseOverField _mouseOver\ parent gnomadPLI off\ priority 2\ searchIndex name,geneName\ shortLabel gnomAD Transcript Missense Constraint\ track missenseByTranscript\ type bigBed 12 +\ url https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r2_1\ urlLabel View this Transcript on the gnomAD browser\ hinv70NonCoding H-Inv non-coding bed 12 H-Inv v7.0 Non-coding Gene Predictions 0 2 15 100 180 135 177 217 0 0 0 http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$$ genes 1 color 15,100,180\ longLabel H-Inv v7.0 Non-coding Gene Predictions\ parent hinv70Composite\ priority 2\ shortLabel H-Inv non-coding\ track hinv70NonCoding\ wgEncodeRegMarkH3k4me1H1hesc H1-hESC bigWig 0 8355 H3K4Me1 Mark (Often Found Near Regulatory Elements) on H1-hESC Cells from ENCODE 0 2 255 212 128 255 233 191 0 0 0 regulation 1 color 255,212,128\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on H1-hESC Cells from ENCODE\ parent wgEncodeRegMarkH3k4me1\ shortLabel H1-hESC\ table wgEncodeBroadHistoneH1hescH3k4me1StdSig\ track wgEncodeRegMarkH3k4me1H1hesc\ type bigWig 0 8355\ wgEncodeRegMarkH3k4me3H1hesc H1-hESC bigWig 0 6957 H3K4Me3 Mark (Often Found Near Promoters) on H1-hESC Cells from ENCODE 0 2 255 212 128 255 233 191 0 0 0 regulation 1 color 255,212,128\ longLabel H3K4Me3 Mark (Often Found Near Promoters) on H1-hESC Cells from ENCODE\ parent wgEncodeRegMarkH3k4me3\ shortLabel H1-hESC\ table wgEncodeBroadHistoneH1hescH3k4me3StdSig\ track wgEncodeRegMarkH3k4me3H1hesc\ type bigWig 0 6957\ wgEncodeRegTxnCaltechRnaSeqH1hescR2x75Il200SigPooled H1-hESC bigWig 0 65535 Transcription of H1-hESC cells from ENCODE 0 2 255 212 128 255 233 191 0 0 0 regulation 1 color 255,212,128\ longLabel Transcription of H1-hESC cells from ENCODE\ parent wgEncodeRegTxn\ priority 2\ shortLabel H1-hESC\ track wgEncodeRegTxnCaltechRnaSeqH1hescR2x75Il200SigPooled\ type bigWig 0 65535\ wgEncodeRegMarkH3k27acH1hesc H1-hESC bigWig 0 14898 H3K27Ac Mark (Often Found Near Regulatory Elements) on H1-hESC Cells from ENCODE 2 2 255 212 128 255 233 191 0 0 0 regulation 1 color 255,212,128\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on H1-hESC Cells from ENCODE\ parent wgEncodeRegMarkH3k27ac\ shortLabel H1-hESC\ table wgEncodeBroadHistoneH1hescH3k27acStdSig\ track wgEncodeRegMarkH3k27acH1hesc\ type bigWig 0 14898\ wgEncodeHaibMethyl450H1hescSitesRep1 H1-hESC bed 9 H1-hESC Methylation 450K Bead Array from ENCODE/HAIB 1 2 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H1-hESC Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 on\ shortLabel H1-hESC\ subGroups cellType=t1H1HESC obtainedBy=HAIB treatment=zNONE\ track wgEncodeHaibMethyl450H1hescSitesRep1\ type bed 9\ wgEncodeFsuRepliChipH1hescWaveSignalRep2 H1-hESC 2 bigWig -2.136414 2.603866 H1-hESC Repli-chip Wavelet-smoothed Signal Rep 2 from ENCODE/FSU 0 2 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Repli-chip Wavelet-smoothed Signal Rep 2 from ENCODE/FSU\ parent wgEncodeFsuRepliChip\ shortLabel H1-hESC 2\ subGroups view=WaveSignal cellType=t1H1HESC rep=rep2\ track wgEncodeFsuRepliChipH1hescWaveSignalRep2\ type bigWig -2.136414 2.603866\ wgEncodeBroadHmmH1hescHMM H1-hESC ChromHMM bed 9 . H1-hESC Chromatin State Segmentation by HMM from ENCODE/Broad 0 2 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H1-hESC Chromatin State Segmentation by HMM from ENCODE/Broad\ origAssembly hg18\ parent wgEncodeBroadHmm\ shortLabel H1-hESC ChromHMM\ subGroups cellType=t1H1HESC\ track wgEncodeBroadHmmH1hescHMM\ type bed 9 .\ wgEncodeAwgDnaseUwdukeH1hescUniPk H1-hESC DNase narrowPeak H1-hESC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 2 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform on\ shortLabel H1-hESC DNase\ subGroups tier=a10 cellType=a10H1-hESC\ track wgEncodeAwgDnaseUwdukeH1hescUniPk\ wgEncodeUmassDekker5CH1hescPkV2 H1-hESC Pk bed 12 H1-hESC 5C Peaks from ENCODE/UMass-Dekker 0 2 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC 5C Peaks from ENCODE/UMass-Dekker\ parent wgEncodeUmassDekker5C\ shortLabel H1-hESC Pk\ subGroups cellType=t1H1HESC region=NONE\ track wgEncodeUmassDekker5CH1hescPkV2\ type bed 12\ wgEncodeOpenChromSynthH1hescPk H1-hESC Syn Pk bed 9 + H1-hESC DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom 0 2 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H1-hESC DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom\ parent wgEncodeOpenChromSynth\ shortLabel H1-hESC Syn Pk\ subGroups cellType=t1H1HESC treatment=aNone\ track wgEncodeOpenChromSynthH1hescPk\ type bed 9 +\ hapmapSnpsCEU HapMap SNPs CEU bed 6 + HapMap SNPs from the CEU Population (Northern and Western European Ancestry in Utah, US - CEPH) 0 2 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HapMap SNPs from the CEU Population (Northern and Western European Ancestry in Utah, US - CEPH)\ parent hapmapSnps\ priority 2\ shortLabel HapMap SNPs CEU\ track hapmapSnpsCEU\ hmc HMC bigWig HMC - Homologous Missense Constraint Score on PFAM domains 2 2 0 130 0 127 192 127 0 0 0

Description

\ \

\ The "Constraint scores" container track includes several subtracks showing the results of\ constraint prediction algorithms. These try to find regions of negative\ selection, where variations likely have functional impact. The algorithms do\ not use multi-species alignments to derive evolutionary constraint, but use\ primarily human variation, usually from variants collected by gnomAD (see the\ gnomAD V2 or V3 tracks on hg19 and hg38) or TOPMED (contained in our dbSNP\ tracks and available as a filter). One of the subtracks is based on UK Biobank\ variants, which are not available publicly, so we have no track with the raw data.\ The number of human genomes that are used as the input for these scores are\ 76k, 53k and 110k for gnomAD, TOPMED and UK Biobank, respectively.\

\ \

Note that another important constraint score, gnomAD\ constraint, is not part of this container track but can be found in the hg38 gnomAD\ track.\

\ \ The algorithms included in this track are:\
    \
  1. \ JARVIS - "Junk" Annotation genome-wide Residual Variation Intolerance Score: \ JARVIS scores were created by first scanning the entire genome with a\ sliding-window approach (using a 1-nucleotide step), recording the number of\ all TOPMED variants and common variants, irrespective of their predicted effect,\ within each window, to eventually calculate a single-nucleotide resolution\ genome-wide residual variation intolerance score (gwRVIS). That score, gwRVIS\ was then combined with primary genomic sequence context, and additional genomic\ annotations with a multi-module deep learning framework to infer\ pathogenicity of noncoding regions that still remains naive to existing\ phylogenetic conservation metrics. The higher the score, the more deleterious\ the prediction. This score covers the entire genome, except the gaps.\ \
  2. \ HMC - Homologous Missense Constraint:\ Homologous Missense Constraint (HMC) is a amino acid level measure\ of genetic intolerance of missense variants within human populations.\ For all assessable amino-acid positions in Pfam domains, the number of\ missense substitutions directly observed in gnomAD (Observed) was counted\ and compared to the expected value under a neutral evolution\ model (Expected). The upper limit of a 95% confidence interval for the\ Observed/Expected ratio is defined as the HMC score. Missense variants\ disrupting the amino-acid positions with HMC<0.8 are predicted to be\ likely deleterious. This score only covers PFAM domains within coding regions.\ \
  3. \ MetaDome - Tolerance Landscape Score (hg19 only):\ MetaDome Tolerance Landscape scores are computed as a missense over synonymous \ variant count ratio, which is calculated in a sliding window (with a size of 21 \ codons/residues) to provide \ a per-position indication of regional tolerance to missense variation. The \ variant database was gnomAD and the score corrected for codon composition. Scores \ <0.7 are considered intolerant. This score covers only coding regions.\ \
  4. \ MTR - Missense Tolerance Ratio (hg19 only):\ Missense Tolerance Ratio (MTR) scores aim to quantify the amount of purifying \ selection acting specifically on missense variants in a given window of \ protein-coding sequence. It is estimated across sliding windows of 31 codons \ (default) and uses observed standing variation data from the WES component of \ gnomAD / the Exome Aggregation Consortium Database (ExAC), version 2.0. Scores\ were computed using Ensembl v95 release. The number of gnomAD 2 exomes used here\ is higher than the number of gnomAD 3 samples (125 exoms versus 76k full genomes), \ but this score only covers coding regions.\ \
  5. \ UK Biobank depletion rank score (hg38 only):\ Halldorsson et al. tabulated the number of UK Biobank variants in each\ 500bp window of the genome and compared this number to an expected number\ given the heptamer nucleotide composition of the window and the fraction of\ heptamers with a sequence variant across the genome and their mutational\ classes. A variant depletion score was computed for every overlapping set\ of 500-bp windows in the genome with a 50-bp step size. They then assigned\ a rank (depletion rank (DR)) from 0 (most depletion) to 100 (least\ depletion) for each 500-bp window. Since the windows are overlapping, we\ plot the value only in the central 50bp of the 500bp window, following\ advice from the author of the score,\ Hakon Jonsson, deCODE Genetics. He suggested that the value of the central\ window, rather than the worst possible score of all overlapping windows, is\ the most informative for a position. This score covers almost the entire genome,\ only very few regions were excluded, where the genome sequence had too many gap characters.
\ \

Display Conventions and Configuration

\ \

JARVIS

\

\ JARVIS scores are shown as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The scores were downloaded and converted to a single bigWig file.\ Move the mouse over the bars to display the exact values. A horizontal line is shown at the 0.733\ value which signifies the 90th percentile.

\ See hg19 makeDoc and\ hg38 makeDoc.

\

\ Interpretation: The authors offer a suggested guideline of > 0.9998 for identifying\ higher confidence calls and minimizing false positives. In addition to that strict threshold, the \ following two more relaxed cutoffs can be used to explore additional hits. Note that these\ thresholds are offered as guidelines and are not necessarily representative of pathogenicity.

\ \

\ \ \ \ \ \ \ \ \ \
PercentileJARVIS score threshold
99th0.9998
95th0.9826
90th0.7338
\

\ \

HMC

\

\ HMC scores are displayed as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The highly-constrained cutoff\ of 0.8 is indicated with a line.

\

\ Interpretation: \ A protein residue with HMC score <1 indicates that missense variants affecting\ the homologous residues are significantly under negative selection (P-value <\ 0.05) and likely to be deleterious. A more stringent score threshold of HMC<0.8\ is recommended to prioritize predicted disease-associated variants.\

\ \

MetaDome

\

\ MetaDome data can be found on two tracks, MetaDome and MetaDome All Data.\ The MetaDome track should be used by default for data exploration. In this track\ the raw data containing the MetaDome tolerance scores were converted into a signal ("wiggle")\ track. Since this data was computed on the proteome, there was a small amount of coordinate\ overlap, roughly 0.42%. In these regions the lowest possible score was chosen for display\ in the track to maintain sensitivity. For this reason, if a protein variant is being evaluated,\ the MetaDome All Data track can be used to validate the score. More information\ on this data can be found in the MetaDome FAQ.

\

\ Interpretation: The authors suggest the following guidelines for evaluating\ intolerance. By default, the MetaDome track displays a horizontal line at 0.7 which \ signifies the first intolerant bin. For more information see the MetaDome publication.

\ \

\ \ \ \ \ \ \ \ \ \
ClassificationMetaDome Tolerance Score
Highly intolerant≤ 0.175
Intolerant≤ 0.525
Slightly intolerant≤ 0.7
\

\ \

MTR

\

\ MTR data can be found on two tracks, MTR All data and MTR Scores. In the\ MTR Scores track the data has been converted into 4 separate signal tracks\ representing each base pair mutation, with the lowest possible score shown when\ multiple transcripts overlap at a position. Overlaps can happen since this score\ is derived from transcripts and multiple transcripts can overlap. \ A horizontal line is drawn on the 0.8 score line\ to roughly represent the 25th percentile, meaning the items below may be of particular\ interest. It is recommended that the data be explored using\ this version of the track, as it condenses the information substantially while\ retaining the magnitude of the data.

\ \

Any specific point mutations of interest can then be researched in the \ MTR All data track. This track contains all of the information from\ \ MTRV2 including more than 3 possible scores per base when transcripts overlap.\ A mouse-over on this track shows the ref and alt allele, as well as the MTR score\ and the MTR score percentile. Filters are available for MTR score, False Discovery Rate\ (FDR), MTR percentile, and variant consequence. By default, only items in the bottom\ 25 percentile are shown. Items in the track are colored according\ to their MTR percentile:

\
    \
  • Green items MTR percentiles over 75\
  • Black items MTR percentiles between 25 and 75\
  • Red items MTR percentiles below 25\
  • Blue items No MTR score\
\

\ Interpretation: Regions with low MTR scores were seen to be enriched with\ pathogenic variants. For example, ClinVar pathogenic variants were seen to\ have an average score of 0.77 whereas ClinVar benign variants had an average score\ of 0.92. Further validation using the FATHMM cancer-associated training dataset saw\ that scores less than 0.5 contained 8.6% of the pathogenic variants while only containing\ 0.9% of neutral variants. In summary, lower scores are more likely to represent\ pathogenic variants whereas higher scores could be pathogenic, but have a higher chance\ to be a false positive. For more information see the MTR-Viewer publication.

\ \

Methods

\ \

JARVIS

\

\ Scores were downloaded and converted to a single bigWig file. See the\ hg19 makeDoc and the\ hg38 makeDoc for more info.\

\ \

HMC

\

\ Scores were downloaded and converted to .bedGraph files with a custom Python \ script. The bedGraph files were then converted to bigWig files, as documented in our \ makeDoc hg19 build log.

\ \

MetaDome

\

\ The authors provided a bed file containing codon coordinates along with the scores. \ This file was parsed with a python script to create the two tracks. For the first track\ the scores were aggregated for each coordinate, then the lowest score chosen for any\ overlaps and the result written out to bedGraph format. The file was then converted\ to bigWig with the bedGraphToBigWig utility. For the second track the file\ was reorganized into a bed 4+3 and conveted to bigBed with the bedToBigBed\ utility.

\

\ See the hg19 makeDoc for details including the build script.

\

\ The raw MetaDome data can also be accessed via their Zenodo handle.

\ \

MTR

\

\ V2\ file was downloaded and columns were reshuffled as well as itemRgb added for the\ MTR All data track. For the MTR Scores track the file was parsed with a python\ script to pull out the highest possible MTR score for each of the 3 possible mutations\ at each base pair and 4 tracks built out of these values representing each mutation.

\

\ See the hg19 makeDoc entry on MTR for more info.

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

\ \

\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

\ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/hmc/hmc.bw stdout\
\

\ \

\ Please refer to our\ Data Access FAQ\ for more information.\

\ \ \

Credits

\ \

\ Thanks to Jean-Madeleine Desainteagathe (APHP Paris, France) for suggesting the JARVIS, MTR, HMC tracks. Thanks to Xialei Zhang for providing the HMC data file and to Dimitrios Vitsios and Slave Petrovski for helping clean up the hg38 JARVIS files for providing guidance on interpretation. Additional\ thanks to Laurens van de Wiel for providing the MetaDome data as well as guidance on the track development and interpretation. \

\ \

References

\ \

\ Vitsios D, Dhindsa RS, Middleton L, Gussow AB, Petrovski S.\ \ Prioritizing non-coding regions based on human genomic constraint and sequence context with deep\ learning.\ Nat Commun. 2021 Mar 8;12(1):1504.\ PMID: 33686085; PMC: PMC7940646\

\ \

\ Xiaolei Zhang, Pantazis I. Theotokis, Nicholas Li, the SHaRe Investigators, Caroline F. Wright, Kaitlin E. Samocha, Nicola Whiffin, James S. Ware\ \ Genetic constraint at single amino acid resolution improves missense variant prioritisation and gene discovery.\ Medrxiv 2022.02.16.22271023\

\ \

\ Wiel L, Baakman C, Gilissen D, Veltman JA, Vriend G, Gilissen C.\ \ MetaDome: Pathogenicity analysis of genetic variants through aggregation of homologous human protein\ domains.\ Hum Mutat. 2019 Aug;40(8):1030-1038.\ PMID: 31116477; PMC: PMC6772141\

\ \

\ Silk M, Petrovski S, Ascher DB.\ \ MTR-Viewer: identifying regions within genes under purifying selection.\ Nucleic Acids Res. 2019 Jul 2;47(W1):W121-W126.\ PMID: 31170280; PMC: PMC6602522\

\ \

\ Halldorsson BV, Eggertsson HP, Moore KHS, Hauswedell H, Eiriksson O, Ulfarsson MO, Palsson G,\ Hardarson MT, Oddsson A, Jensson BO et al.\ \ The sequences of 150,119 genomes in the UK Biobank.\ Nature. 2022 Jul;607(7920):732-740.\ PMID: 35859178; PMC: PMC9329122\

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0 regulation 1 longLabel HT-1080 IGF2BP1 RBP Associated RNA by Switchgear from ENCODE/SUNY\ parent wgEncodeSunySwitchgear on\ shortLabel HT-1080 IGF2BP1\ subGroups factor=IGF2BP1 cellType=HT1080\ track wgEncodeSunySwitchgearHt1080Igf2bp1RbpAssocRna\ type broadPeak\ phastBiasPosteriors3 human posterior bigWig 0 1 phastBias gBGC posterior probability on human branch 0 2 0 0 0 127 127 127 0 0 0 compGeno 0 longLabel phastBias gBGC posterior probability on human branch\ parent phastBiasPosteriors\ priority 2\ shortLabel human posterior\ subGroups view=POST\ track phastBiasPosteriors3\ xGen_Research_Probes IDT xGen v1.0 P bigBed IDT - xGen Exome Research Panel V1.0 Probes 1 2 255 176 0 255 215 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/xgen-exome-research-panel-probes-hg19.bb\ color 255,176,0\ longLabel IDT - xGen Exome Research Panel V1.0 Probes\ parent exomeProbesets off\ shortLabel IDT xGen v1.0 P\ track xGen_Research_Probes\ type bigBed\ visibility dense\ jaspar2022 JASPAR 2022 TFBS bigBed 6 + JASPAR CORE 2022 - Predicted Transcription Factor Binding Sites 0 2 0 0 0 127 127 127 1 0 0 http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all regulation 1 bigDataUrl /gbdb/hg19/jaspar/JASPAR2022.bb\ filterValues.TFName Ahr::Arnt,Alx1,ALX3,Alx4,Ar,ARGFX,Arid3a,Arid3b,Arid5a,Arnt,ARNT2,ARNT::HIF1A,Arntl,Arx,ASCL1,Ascl2,Atf1,ATF2,Atf3,ATF3,ATF4,ATF6,ATF7,Atoh1,ATOH7,BACH1,Bach1::Mafk,BACH2,BARHL1,BARHL2,BARX1,BARX2,BATF,BATF3,BATF::JUN,Bcl11B,BCL6,BCL6B,Bhlha15,BHLHA15,BHLHE22,BHLHE23,BHLHE40,BHLHE41,BNC2,BSX,CDX1,CDX2,CDX4,CEBPA,CEBPB,CEBPD,CEBPE,CEBPG,CLOCK,CREB1,CREB3,CREB3L1,Creb3l2,CREB3L4,Creb5,CREM,Crx,CTCF,CTCFL,CUX1,CUX2,DBP,Ddit3::Cebpa,DLX1,Dlx2,Dlx3,Dlx4,Dlx5,DLX6,Dmbx1,Dmrt1,DMRT3,DMRTA1,DMRTA2,DMRTC2,DPRX,DRGX,Dux,DUX4,DUXA,E2F1,E2F2,E2F3,E2F4,E2F6,E2F7,E2F8,EBF1,Ebf2,EBF3,EGR1,EGR2,EGR3,EGR4,EHF,ELF1,ELF2,ELF3,ELF4,Elf5,ELK1,ELK1::HOXA1,ELK1::HOXB13,ELK1::SREBF2,ELK3,ELK4,EMX1,EMX2,EN1,EN2,EOMES,ERF,ERF::FIGLA,ERF::FOXI1,ERF::FOXO1,ERF::HOXB13,ERF::NHLH1,ERF::SREBF2,Erg,ESR1,ESR2,ESRRA,ESRRB,Esrrg,ESX1,ETS1,ETS2,ETV1,ETV2,ETV2::DRGX,ETV2::FIGLA,ETV2::FOXI1,ETV2::HOXB13,ETV3,ETV4,ETV5,ETV5::DRGX,ETV5::FIGLA,ETV5::FOXI1,ETV5::FOXO1,ETV5::HOXA2,ETV6,ETV7,EVX1,EVX2,EWSR1-FLI1,FERD3L,FEV,FIGLA,FLI1,FLI1::DRGX,FLI1::FOXI1,FOS,FOSB::JUN,FOSB::JUNB,FOS::JUN,FOS::JUNB,FOS::JUND,FOSL1,FOSL1::JUN,FOSL1::JUNB,FOSL1::JUND,FOSL2,FOSL2::JUN,FOSL2::JUNB,FOSL2::JUND,FOXA1,FOXA2,FOXA3,FOXB1,FOXC1,FOXC2,FOXD1,FOXD2,FOXD3,FOXE1,Foxf1,FOXF2,FOXG1,FOXH1,FOXI1,Foxj2,FOXJ2::ELF1,Foxj3,FOXK1,FOXK2,FOXL1,Foxl2,Foxn1,FOXN3,Foxo1,FOXO1::ELF1,FOXO1::ELK1,FOXO1::ELK3,FOXO1::FLI1,Foxo3,FOXO4,FOXO6,FOXP1,FOXP2,FOXP3,Foxq1,GABPA,GATA1,GATA1::TAL1,GATA2,Gata3,GATA4,GATA5,GATA6,GBX1,GBX2,GCM1,GCM2,GFI1,Gfi1B,Gli1,Gli2,GLI3,GLIS1,GLIS2,GLIS3,Gmeb1,GMEB2,GRHL1,GRHL2,GSC,GSC2,GSX1,GSX2,Hand1::Tcf3,HAND2,HES1,HES2,HES5,HES6,HES7,HESX1,HEY1,HEY2,Hic1,HIC2,HIF1A,HINFP,HLF,HMBOX1,Hmx1,Hmx2,Hmx3,Hnf1A,HNF1A,HNF1B,HNF4A,HNF4G,HOXA1,HOXA10,Hoxa11,Hoxa13,HOXA2,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,HOXB13,HOXB2,HOXB2::ELK1,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC8,HOXC9,HOXD10,HOXD11,HOXD12,HOXD12::ELK1,Hoxd13,HOXD3,HOXD4,HOXD8,HOXD9,HSF1,HSF2,HSF4,IKZF1,Ikzf3,INSM1,Irf1,IRF2,IRF3,IRF4,IRF5,IRF6,IRF7,IRF8,IRF9,Isl1,ISL2,ISX,JDP2,Jun,JUN,JUNB,JUND,JUN::JUNB,KLF1,KLF10,KLF11,KLF12,KLF13,KLF14,KLF15,KLF16,KLF17,KLF2,KLF3,KLF4,KLF5,KLF6,KLF7,KLF9,LBX1,LBX2,Lef1,Lhx1,LHX2,Lhx3,Lhx4,LHX5,LHX6,Lhx8,LHX9,LIN54,LMX1A,LMX1B,MAF,MAFA,Mafb,MAFF,Mafg,MAFG::NFE2L1,MAFK,MAF::NFE2,MAX,MAX::MYC,MAZ,Mecom,MEF2A,MEF2B,MEF2C,MEF2D,MEIS1,MEIS2,MEIS3,MEOX1,MEOX2,MGA,MGA::EVX1,MITF,mix-a,MIXL1,MLX,Mlxip,MLXIPL,MNT,MNX1,MSANTD3,MSC,Msgn1,MSX1,MSX2,Msx3,MTF1,MXI1,MYB,MYBL1,MYBL2,MYC,MYCN,MYF5,MYF6,MYOD1,MYOG,MZF1,NEUROD1,Neurod2,NEUROG1,NEUROG2,Nfat5,Nfatc1,Nfatc2,NFATC3,NFATC4,NFE2,Nfe2l2,NFIA,NFIB,NFIC,NFIC::TLX1,NFIL3,NFIX,NFKB1,NFKB2,NFYA,NFYB,NFYC,NHLH1,NHLH2,Nkx2-1,NKX2-2,NKX2-3,NKX2-4,NKX2-5,NKX2-8,Nkx3-1,Nkx3-2,NKX6-1,NKX6-2,NKX6-3,Nobox,NOTO,Npas2,Npas4,NR1D1,NR1D2,Nr1H2,NR1H2::RXRA,Nr1h3::Rxra,Nr1H4,NR1H4::RXRA,NR1I2,NR1I3,NR2C1,NR2C2,Nr2e1,Nr2e3,NR2F1,NR2F2,Nr2f6,Nr2F6,NR2F6,NR3C1,NR3C2,NR4A1,NR4A2,NR4A2::RXRA,NR5A1,Nr5A2,NR6A1,Nrf1,NRL,OLIG1,Olig2,OLIG2,OLIG3,ONECUT1,ONECUT2,ONECUT3,OSR1,OSR2,OTX1,OTX2,OVOL1,OVOL2,PATZ1,PAX1,PAX2,PAX3,PAX4,PAX5,PAX6,Pax7,PAX9,PBX1,PBX2,PBX3,PDX1,PHOX2A,PHOX2B,PITX1,PITX2,PITX3,PKNOX1,PKNOX2,PLAG1,Plagl1,PLAGL2,POU1F1,POU2F1,POU2F1::SOX2,POU2F2,POU2F3,POU3F1,POU3F2,POU3F3,POU3F4,POU4F1,POU4F2,POU4F3,POU5F1,POU5F1B,Pou5f1::Sox2,POU6F1,POU6F2,PPARA::RXRA,PPARD,PPARG,Pparg::Rxra,PRDM1,Prdm14,Prdm15,Prdm4,Prdm5,PRDM9,PROP1,PROX1,PRRX1,PRRX2,Ptf1a,Ptf1A,RARA,RARA::RXRA,RARA::RXRG,Rarb,RARB,Rarg,RARG,RAX,RAX2,RBPJ,Rbpjl,REL,RELA,RELB,REST,RFX1,RFX2,RFX3,RFX4,RFX5,Rfx6,RFX7,Rhox11,RHOXF1,RORA,RORB,RORC,RREB1,Runx1,RUNX2,RUNX3,Rxra,RXRA::VDR,RXRB,RXRG,SATB1,SCRT1,SCRT2,Sf1,SHOX,Shox2,SIX1,SIX2,Six3,Six4,SMAD2,Smad2::Smad3,SMAD2::SMAD3::SMAD4,SMAD3,Smad4,SMAD5,SNAI1,SNAI2,SNAI3,SOHLH2,Sox1,SOX10,Sox11,SOX12,SOX13,SOX14,SOX15,Sox17,SOX18,SOX2,SOX21,Sox3,SOX4,Sox5,Sox6,SOX8,SOX9,SP1,SP2,SP3,SP4,SP5,SP8,SP9,SPDEF,Spi1,SPIB,SPIC,Spz1,SREBF1,SREBF2,SRF,SRY,STAT1,STAT1::STAT2,Stat2,STAT3,Stat4,Stat5a,Stat5a::Stat5b,Stat5b,Stat6,TAL1::TCF3,TBP,TBR1,TBX1,TBX15,TBX18,TBX19,TBX2,TBX20,TBX21,TBX3,TBX4,TBX5,Tbx6,TBXT,Tcf12,TCF12,Tcf21,TCF21,TCF3,TCF4,TCF7,TCF7L1,TCF7L2,TCFL5,TEAD1,TEAD2,TEAD3,TEAD4,TEF,TFAP2A,TFAP2B,TFAP2C,TFAP2E,TFAP4,TFAP4::ETV1,TFAP4::FLI1,TFCP2,Tfcp2l1,TFDP1,TFE3,TFEB,TFEC,TGIF1,TGIF2,TGIF2LX,TGIF2LY,THAP1,Thap11,THRA,THRB,TLX2,TP53,TP63,TP73,TRPS1,TWIST1,Twist2,UNCX,USF1,USF2,VAX1,VAX2,Vdr,VENTX,VEZF1,VSX1,VSX2,Wt1,XBP1,Yy1,YY2,ZBED1,ZBED2,ZBTB12,ZBTB14,ZBTB18,ZBTB26,ZBTB32,ZBTB33,ZBTB6,ZBTB7A,ZBTB7B,ZBTB7C,ZEB1,ZFP14,Zfp335,ZFP42,ZFP57,Zfx,ZIC1,Zic1::Zic2,Zic2,Zic3,ZIC4,ZIC5,ZIM3,ZKSCAN1,ZKSCAN3,ZKSCAN5,ZNF135,ZNF136,ZNF140,ZNF143,ZNF148,ZNF16,ZNF189,ZNF211,ZNF214,ZNF24,ZNF257,ZNF263,ZNF274,ZNF281,ZNF282,ZNF317,ZNF320,ZNF324,ZNF331,ZNF341,ZNF343,ZNF354A,ZNF354C,ZNF382,ZNF384,ZNF410,ZNF416,ZNF417,ZNF418,Znf423,ZNF449,ZNF454,ZNF460,ZNF528,ZNF530,ZNF549,ZNF574,ZNF582,ZNF610,ZNF652,ZNF667,ZNF669,ZNF675,ZNF680,ZNF682,ZNF684,ZNF692,ZNF701,ZNF707,ZNF708,ZNF740,ZNF75D,ZNF76,ZNF768,ZNF784,ZNF8,ZNF816,ZNF85,ZNF93,ZSCAN29,ZSCAN31,ZSCAN4\ labelFields TFName\ longLabel JASPAR CORE 2022 - Predicted Transcription Factor Binding Sites\ motifPwmTable hgFixed.jasparCore2022\ parent jaspar off\ priority 2\ shortLabel JASPAR 2022 TFBS\ track jaspar2022\ type bigBed 6 +\ visibility hide\ wgEncodeUwAffyExonArrayK562SimpleSignalRep1 K562 1 broadPeak K562 Exon array Signal Rep 1 from ENCODE/UW 0 2 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray on\ shortLabel K562 1\ subGroups cellType=t1K562 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayK562SimpleSignalRep1\ type broadPeak\ wgEncodeGisChiaPetK562CtcfSigRep1 K562 CTCF Sig 1 bigWig 1.000000 1007.000000 K562 CTCF ChIA-PET Signal Rep 1 from ENCODE/GIS-Ruan 2 2 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CTCF ChIA-PET Signal Rep 1 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetSignal on\ shortLabel K562 CTCF Sig 1\ subGroups view=Signal factor=CTCF cellType=t1K562 rep=rep1\ track wgEncodeGisChiaPetK562CtcfSigRep1\ type bigWig 1.000000 1007.000000\ wgEncodeUchicagoTfbsK562EfosControlSig K562 FOS/GFP Sg bigWig -19284.970703 7497.709473 K562 FOS GFP-tag TFBS Signal from ENCODE/UChicago 2 2 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 FOS GFP-tag TFBS Signal from ENCODE/UChicago\ parent wgEncodeUchicagoTfbsViewSignal\ shortLabel K562 FOS/GFP Sg\ subGroups view=Signal factor=FOS cellType=K562 control=ControlFOS rep=repPOOLED\ track wgEncodeUchicagoTfbsK562EfosControlSig\ type bigWig -19284.970703 7497.709473\ wgEncodeSydhHistoneK562H3k4me1UcdSig K562 H3K4me1 bigWig 1.000000 3999.000000 K562 H3K4me1 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 2 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K4me1 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal on\ shortLabel K562 H3K4me1\ subGroups view=Signal factor=H3K04ME1 cellType=aK562 control=UCD treatment=NONE\ track wgEncodeSydhHistoneK562H3k4me1UcdSig\ type bigWig 1.000000 3999.000000\ wgEncodeSydhRnaSeqK562Ifna30PolyaRaw K562 pA+ Na30 bigWig 0.000000 165257.000000 K562 polyA+ IFNa30 RNA-seq Raw Signal from ENCODE/SYDH 2 2 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 polyA+ IFNa30 RNA-seq Raw Signal from ENCODE/SYDH\ parent wgEncodeSydhRnaSeqViewSignal on\ shortLabel K562 pA+ Na30\ subGroups view=RawSignal cellType=t1K562 rnaExtract=polyA treatment=IFNa30\ track wgEncodeSydhRnaSeqK562Ifna30PolyaRaw\ type bigWig 0.000000 165257.000000\ wgEncodeUwDgfK562Pk K562 Pk narrowPeak K562 DNaseI DGF Peaks from ENCODE/UW 0 2 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks on\ shortLabel K562 Pk\ subGroups view=Peaks cellType=t1K562 treatment=aNONE rep=rep1\ track wgEncodeUwDgfK562Pk\ type narrowPeak\ wgEncodeSydhNsomeK562Sig K562 Sig bigWig 0.000000 31303.900391 K562 Nucleosome Signal from ENCODE/Stanford/BYU 2 2 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Nucleosome Signal from ENCODE/Stanford/BYU\ origAssembly hg19\ parent wgEncodeSydhNsomeViewSignal\ shortLabel K562 Sig\ subGroups view=Signal cellType=t1K562\ track wgEncodeSydhNsomeK562Sig\ type bigWig 0.000000 31303.900391\ pgKb1454 KB1 454 pgSnp KB1 Genome Variants, 454 3 2 0 0 0 127 127 127 0 0 0 varRep 1 longLabel KB1 Genome Variants, 454\ origAssembly hg18\ parent pgSnpPSU\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel KB1 454\ subGroups view=A_PSU id=AA_KB1 type=SNP\ track pgKb1454\ lovdLong LOVD Variants >= 50 bp bigBed 9 + LOVD: Leiden Open Variation Database Public Variants, long >= 50 bp variants 0 2 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg19/lovd/lovd.hg19.long.bb\ group phenDis\ longLabel LOVD: Leiden Open Variation Database Public Variants, long >= 50 bp variants\ mergeSpannedItems on\ noScoreFilter on\ parent lovdComp\ shortLabel LOVD Variants >= 50 bp\ track lovdLong\ type bigBed 9 +\ urls id="https://varcache.lovd.nl/redirect/$$"\ visibility hide\ MaxCounts_Rev Max counts of CAGE reads (rev) bigWig Max counts of CAGE reads reverse 2 2 0 0 255 127 127 255 0 0 0 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ctssMaxCounts.rev.bw\ color 0,0,255\ dataVersion FANTOM5 phase2.5\ longLabel Max counts of CAGE reads reverse\ parent Max_counts_multiwig\ shortLabel Max counts of CAGE reads (rev)\ subGroups category=max strand=reverse\ track MaxCounts_Rev\ type bigWig\ MaxAFmutC MaxAF Mutation: C bigWig -1.29334 0.75731 BayesDel v1 Score (MaxAF): Mutation is C 2 2 120 193 194 187 224 224 0 0 0

Description

\ \

\ The "Prediction Scores" container track includes subtracks showing the results of prediction\ scores.

\ \

BayesDel

\

BayesDel is a deleteriousness meta-score for coding and non-coding variants, single nucleotide\ variants, and small insertion/deletions. The range of the score is from -1.29334 to 0.75731.\ The higher the score, the more likely the variant is pathogenic.

\ \

\ For gene discovery research, a universal cutoff value (0.0692655 with MaxAF, -0.0570105 without\ MaxAF) was obtained by maximizing sensitivity and specificity in classifying ClinVar variants;\ Version 1 (build date 2017-08-24).

\

\ For clinical variant classification, Bayesdel thresholds have been calculated for a variant to\ reach various levels of evidence; please refer to Pejaver et al. 2022 for general application\ of these scores in clinical applications.\

\ \

Display Conventions and Configuration

\ \

BayesDel

\

There are eight subtracks for the BayesDel track: four include pre-computed MaxAF-integrated BayesDel\ scores for missense variants, one for each base. The other four are of the same format, but scores\ are not MaxAF-integrated.

\ \

For SNVs, at each genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing the reference allele,\ (e.g. A to A) is always set to zero.

\ \

Note: There are cases in which a genomic position will have one value missing.\

\ \

When using this track, zoom in until you can see every base pair at the top of the display.\ Otherwise, there are several nucleotides per pixel under your mouse cursor and instead of an actual\ score, the tooltip text will show the average score of all nucleotides under the cursor. This is\ indicated by the prefix "~" in the mouseover.\

\ \

Data Access

\

BayesDel scores are available at the\ BayesDel website.\ \

Methods

\

BayesDel data was converted from the files provided on the\ BayesDel_170824 Database.\ The number 170824 is the date (2017-08-24) the scores were created. Both sets of BayesDel scores are\ available in this database, one integrated MaxAF (named BayesDel_170824_addAF) and one without\ (named BayesDel_170824_noAF). Data conversion was performed using\ \ custom Python scripts.\

\ \

Credits

\

Thanks to the BayesDel team for providing precomputed data, and to Tiana Pereira, Christopher\ Lee, Gerardo Perez, and Anna Benet-Pages of the Genome Browser team.

\ \

References

\

\ Feng BJ.\ \ PERCH: A Unified Framework for Disease Gene Prioritization.\ Hum Mutat. 2017 Mar;38(3):243-251.\ PMID: 27995669; PMC: PMC5299048\

\ \

\ Pejaver V, Byrne AB, Feng BJ, Pagel KA, Mooney SD, Karchin R, O'Donnell-Luria A, Harrison SM,\ Tavtigian SV, Greenblatt MS et al.\ \ Calibration of computational tools for missense variant pathogenicity classification and ClinGen\ recommendations for PP3/BP4 criteria.\ Am J Hum Genet. 2022 Dec 1;109(12):2163-2177.\ PMID: 36413997; PMC: PMC9748256\

\ \

\ Tian Y, Pesaran T, Chamberlin A, Fenwick RB, Li S, Gau CL, Chao EC, Lu HM, Black MH, Qian D.\ \ REVEL and BayesDel outperform other in silico meta-predictors for clinical variant\ classification.\ Sci Rep. 2019 Sep 4;9(1):12752.\ PMID: 31484976; PMC: PMC6726608\

\ phenDis 0 bigDataUrl /gbdb/hg19/bayesDel/MaxAFBayesDelMutC.bw\ color 120, 193, 194\ html predictionScoresSuper\ longLabel BayesDel v1 Score (MaxAF): Mutation is C\ maxHeightPixels 128:20:8\ parent bayesDel on\ shortLabel MaxAF Mutation: C\ track MaxAFmutC\ type bigWig -1.29334 0.75731\ visibility full\ windowingFunction mean+whiskers\ dhcVcfHGDP00456 Mbuti Variants vcfTabix Mbuti Individual (HGDP00456) Variant Calls 0 2 0 0 0 127 127 127 0 0 0 denisova 1 longLabel Mbuti Individual (HGDP00456) Variant Calls\ parent dhcVcfModern\ priority 2\ shortLabel Mbuti Variants\ track dhcVcfHGDP00456\ vcfDoMaf off\ bamSLMez1 Mez1 Sequence bam Mez1 Sequence Reads 0 2 0 0 0 127 127 127 0 0 0 neandertal 1 longLabel Mez1 Sequence Reads\ parent ntSeqReads\ shortLabel Mez1 Sequence\ subGroups sample=Mez1\ track bamSLMez1\ jaxQtlPadded MGI Mouse QTL Padded bed 4 . MGI Mouse QTL Peak-Score Markers Padded to 100k and Coarsely Mapped to Human 0 2 200 100 0 227 177 127 0 0 0 http://www.informatics.jax.org/marker/$$ phenDis 1 color 200,100,0\ longLabel MGI Mouse QTL Peak-Score Markers Padded to 100k and Coarsely Mapped to Human\ parent jaxQtlMapped\ priority 2\ shortLabel MGI Mouse QTL Padded\ track jaxQtlPadded\ ucsfMreSeqBrainCpG MRE CpG bigWig 0.09 878.8 MRE-seq CpG Score 2 2 0 100 0 200 100 0 0 0 0 regulation 0 altColor 200,100,0\ autoScale on\ color 0,100,0\ configurable on\ longLabel MRE-seq CpG Score\ maxHeightPixels 128:32:16\ noInherit on\ parent ucsfBrainMethylViewCG\ priority 10\ shortLabel MRE CpG\ subGroups view=CG sampleType=Brain assayType=MRE3\ track ucsfMreSeqBrainCpG\ type bigWig 0.09 878.8\ yLineOnOff on\ cons46wayViewalign Multiz Alignments bed 4 Vertebrate Multiz Alignment & Conservation (46 Species) 3 2 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Vertebrate Multiz Alignment & Conservation (46 Species)\ parent cons46way\ shortLabel Multiz Alignments\ track cons46wayViewalign\ view align\ viewUi on\ visibility pack\ mtrC Mutation: C bigWig MTR Score: Mutation is C 2 2 124 39 175 189 147 215 0 0 0 phenDis 0 bigDataUrl /gbdb/hg19/mtr/c.bw\ longLabel MTR Score: Mutation is C\ maxHeightPixels 128:40:8\ parent mtrScores on\ shortLabel Mutation: C\ track mtrC\ type bigWig\ visibility full\ revelC Mutation: C bigWig REVEL: Mutation is C 1 2 150 80 200 202 167 227 0 0 0 phenDis 0 bigDataUrl /gbdb/hg19/revel/c.bw\ longLabel REVEL: Mutation is C\ maxHeightPixels 128:20:8\ maxWindowToDraw 10000000\ maxWindowToQuery 500000\ mouseOverFunction noAverage\ parent revel on\ shortLabel Mutation: C\ track revelC\ type bigWig\ viewLimits 0:1.0\ viewLimitsMax 0:1.0\ visibility dense\ caddC Mutation: C bigWig CADD 1.6 Score: Mutation is C 1 2 100 130 160 177 192 207 0 0 0 phenDis 0 bigDataUrl /gbdb/hg19/cadd/c.bw\ longLabel CADD 1.6 Score: Mutation is C\ maxHeightPixels 128:20:8\ parent cadd on\ shortLabel Mutation: C\ track caddC\ type bigWig\ viewLimits 10:50\ viewLimitsMax 0:100\ visibility dense\ platinumNA12877 NA12877 vcfTabix Platinum genome variant NA12877 3 2 0 0 0 127 127 127 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 1 bigDataUrl /gbdb/hg19/platinumGenomes/NA12877.vcf.gz\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX\ configureByPopup off\ group varRep\ longLabel Platinum genome variant NA12877\ maxWindowToDraw 200000\ parent platinumGenomes\ shortLabel NA12877\ showHardyWeinberg on\ track platinumNA12877\ type vcfTabix\ vcfDoFilter off\ vcfDoMaf off\ visibility pack\ refSeqComposite NCBI RefSeq genePred RefSeq genes from NCBI 1 2 0 0 0 127 127 127 0 0 0

Description

\

\ The NCBI RefSeq Genes composite track shows human protein-coding and non-protein-coding\ genes taken from the NCBI RNA reference sequences collection (RefSeq). All subtracks use\ coordinates provided by RefSeq, except for the UCSC RefSeq track, which UCSC produces by\ realigning the RefSeq RNAs to the genome. This realignment may result in occasional differences\ between the annotation coordinates provided by UCSC and NCBI. See the \ Methods section for more details about how the different tracks were \ created.

\

\ Please visit NCBI's Feedback for Gene and Reference Sequences (RefSeq) page to make suggestions, \ submit additions and corrections, or ask for help concerning RefSeq records.

\ \

\ For more information on the different gene tracks, see our Genes FAQ.

\ \

Display Conventions and Configuration

\

\ This track is a composite track that contains differing data sets.\ To show only a selected set of subtracks, uncheck the boxes next to the tracks that you wish to \ hide. Note: Not all subtracts are available on all assemblies.

\ \ The possible subtracks include:\
\
RefSeq aligned annotations and UCSC alignment of RefSeq annotations\
\
    \
  • \ RefSeq All – all curated and predicted annotations provided by \ RefSeq.
    • \
  • \ RefSeq Curated – subset of RefSeq All that includes only those \ transcripts whose accessions begin with NM, NR, NP or YP. (NP and YP are used only for\ protein-coding genes on the mitochondrion; YP is used for human only.)
    • \ These were manually curated by the NCBI RefSeq group, based on publications\ describing transcripts and manual reviews of evidence which includes EST\ and full-length cDNA alignments, protein sequences, splice sites and any\ other evidence available in databases or the scientific literature. The\ resulting sequences can differ from the genome, they exist independently \ from a particular human genome build, and so must be aligned to the genome to create a track.\ The "RefSeq Curated" track is NCBI's mapping of curated transcripts to the genome.\ For transcripts where researchers are interested in an alternative\ alignment, the "UCSC RefSeq" track can be used, it shows a BLAT alignment of curated\ RefSeq transcripts (see "UCSC RefSeq" below and also the \ FAQ).\
  • \ RefSeq Predicted – subset of RefSeq All that includes those annotations whose \ accessions begin with XM or XR. They were predicted based on protein, cDNA, EST\ and RNA-seq alignments to the genome assembly by the NCBI Gnomon prediction software.
    • \
  • \ RefSeq Other – all other annotations produced by the RefSeq group that \ do not fit the requirements for inclusion in the RefSeq Curated or the \ RefSeq Predicted tracks. Examples are untranscribed pseudogenes or gene clusters, such as HOX or protocadherin alpha. They were manually curated from \ publications or databases but are not typical transcribed genes.
    • \
  • \ RefSeq Alignments – alignments of RefSeq RNAs to the human genome provided\ by the RefSeq group, following the display conventions for\ PSL tracks.
    • \
  • \ RefSeq Diffs – alignment differences between the human reference genome(s) \ and RefSeq transcripts. (Track not currently available for every assembly.)\
    • \
  • \ UCSC RefSeq – annotations generated from UCSC's realignment of RNAs with NM \ and NR accessions to the human genome. This track was previously known as the "RefSeq \ Genes" track. Because this track shows all possible top-scoring\ alignments, it can contain duplicated transcripts. See our FAQ for details.
    • \
  • \ RefSeq Select – Subset of RefSeq Curated, transcripts marked as \ part of the RefSeq Select dataset. \ A single Select transcript is chosen as representative for each protein-coding gene. \ See NCBI RefSeq Select. \
    • \
  • \ RefSeq HGMD (subset) – Subset of RefSeq Curated, transcripts annotated by the Human\ Gene Mutation Database. This track is only available on the human genomes hg19 and hg38.\ It is the most restricted RefSeq subset, targeting clinical diagnostics.\
    • \
\
\ \

\ The RefSeq All, RefSeq Curated, RefSeq Predicted, RefSeq HGMD,\ RefSeq Select and UCSC RefSeq tracks follow the display conventions for\ gene prediction tracks.\ The color shading indicates the level of review the RefSeq record has undergone:\ predicted (light), provisional (medium), or reviewed (dark), as defined by RefSeq.

\ \

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
ColorLevel of review
Reviewed: the RefSeq record has been reviewed by NCBI staff or by a collaborator. The NCBI review process includes assessing available sequence data and the literature. Some RefSeq records may incorporate expanded sequence and annotation information.
Provisional: the RefSeq record has not yet been subject to individual review. The initial sequence-to-gene association has been established by outside collaborators or NCBI staff.
Predicted: the RefSeq record has not yet been subject to individual review, and some aspect of the RefSeq record is predicted.
\

\ \

\ The item labels and codon display properties for features within this track can be configured \ through the check-box controls at the top of the track description page. To adjust the settings \ for an individual subtrack, click the wrench icon next to the track name in the subtrack list .

\
    \
  • \ Label: By default, items are labeled by gene name. Click the appropriate Label \ option to display the accession name or OMIM identifier instead of the gene name, show all or a \ subset of these labels including the gene name, OMIM identifier and accession names, or turn off \ the label completely.
    • \
  • \ Codon coloring: This track has an optional codon coloring feature that \ allows users to quickly validate and compare gene predictions. To display codon colors, select the\ genomic codons option from the Color track by codons pull-down menu. For more \ information about this feature, go to the Coloring Gene Predictions and Annotations by Codon page.
    • \
\ \

The RefSeq Diffs track contains five different types of inconsistency between the\ reference genome sequence and the RefSeq transcript sequences. The five types of differences are\ as follows:\

    \
  • \ mismatch – aligned but mismatching bases, plus HGVS g. \ to show the genomic change required to match the transcript and HGVS c./n. \ to show the transcript change required to match the genome.
    • \
  • \ short gap – genomic gaps that are too small to be introns (arbitrary cutoff of\ \ < 45 bp), most likely insertions/deletion variants or errors, with HGVS g. and c./n. \ \ showing differences.
    • \
  • \ shift gap – shortGap items whose placement could be shifted left and/or right on\ \ the genome due to repetitive sequence, with HGVS c./n. position range of ambiguous region \ \ in transcript. Here, thin and thick lines are used -- the thin line shows the span of the\ \ repetitive sequence, and the thick line shows the rightmost shifted gap.\
    • \
  • \ double gap – genomic gaps that are long enough to be introns but that skip over \ \ transcript sequence (invisible in default setting), with HGVS c./n. deletion.
    • \
  • \ skipped – sequence at the beginning or end of a transcript that is not aligned to\ the genome\ (invisible in default setting), with HGVS c./n. deletion
    • \ \
\ \ HGVS Terminology (Human Genome Variation Society):\ \ g. = genomic sequence ; c. = coding DNA sequence ; n. = non-coding RNA reference sequence.\

\ \

\ When reporting HGVS with RefSeq sequences, to make sure that results from\ research articles can be mapped to the genome unambiguously, \ please specify the RefSeq annotation release displayed on the transcript's\ Genome Browser details page and also the RefSeq transcript ID with version\ (e.g. NM_012309.4 not NM_012309). \

\ \ \ \

Methods

\

\ Tracks contained in the RefSeq annotation and RefSeq RNA alignment tracks were created at UCSC using \ data from the NCBI RefSeq project. Data files were downloaded from RefSeq in GFF file format and \ converted to the genePred and PSL table formats for display in the Genome Browser. Information about\ the NCBI annotation pipeline can be found \ here.

\ \

The RefSeq Diffs track is generated by UCSC using NCBI's RefSeq RNA alignments.

\

\ The UCSC RefSeq Genes track is constructed using the same methods as previous RefSeq Genes tracks.\ RefSeq RNAs were aligned against the human genome using BLAT. Those with an alignment of\ less than 15% were discarded. When a single RNA aligned in multiple places, the alignment\ having the highest base identity was identified. Only alignments having a base identity\ level within 0.1% of the best and at least 96% base identity with the genomic sequence were\ kept.

\ \

Data Access

\

\ The raw data for these tracks can be accessed in multiple ways. It can be explored interactively \ using the REST API,\ Table Browser or\ using the Table Browser or \ Data Integrator. The tables can also be accessed programmatically through our\ public MySQL server or downloaded from our\ downloads server for local processing. The previous track versions are available\ in the archives of our downloads server. You can also access any RefSeq table\ entries in JSON format through our \ JSON API.

\

\ The data in the RefSeq Other and RefSeq Diffs tracks are organized in \ bigBed file format; more\ information about accessing the information in this bigBed file can be found\ below. The other subtracks are associated with database tables as follows:

\
\
genePred format:
\
    \
  • RefSeq All - ncbiRefSeq
    • \
  • RefSeq Curated - ncbiRefSeqCurated
    • \
  • RefSeq Predicted - ncbiRefSeqPredicted
    • \
  • RefSeq HGMD - ncbiRefSeqHgmd
    • \
  • RefSeq Select - ncbiRefSeqSelect
    • \
  • UCSC RefSeq - refGene
    • \
\
PSL format:
\
    \ \
  • RefSeq Alignments - ncbiRefSeqPsl
    • \
\
\

\ The first column of each of these tables is "bin". This column is designed\ to speed up access for display in the Genome Browser, but can be safely ignored in downstream\ analysis. You can read more about the bin indexing system\ here.

\

\ The annotations in the RefSeqOther and RefSeqDiffs tracks are stored in bigBed \ files, which can be obtained from our downloads server here,\ ncbiRefSeqOther.bb and \ ncbiRefSeqDiffs.bb.\ Individual regions or the whole set of genome-wide annotations can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system from the utilities directory linked below. For example, to extract only\ annotations in a given region, you could use the following command:

\

\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/ncbiRefSeq/ncbiRefSeqOther.bb\ -chrom=chr16 -start=34990190 -end=36727467 stdout

\

\ You can download a GTF format version of the RefSeq All table from the \ GTF downloads directory.\ The genePred format tracks can also be converted to GTF format using the\ genePredToGtf utility, available from the\ utilities directory on the UCSC downloads \ server. The utility can be run from the command line like so:

\ genePredToGtf hg19 ncbiRefSeqPredicted ncbiRefSeqPredicted.gtf\

\ Note that using genePredToGtf in this manner accesses our public MySQL server, and you therefore \ must set up your hg.conf as described on the MySQL page linked near the beginning of the Data Access\ section.

\

\ A file containing the RNA sequences in FASTA format for all items in the RefSeq All, RefSeq Curated, \ and RefSeq Predicted tracks can be found on our downloads server\ here.

\

\ Please refer to our mailing list archives for questions.

\ \

Credits

\

\ This track was produced at UCSC from data generated by scientists worldwide and curated by the\ NCBI RefSeq project.

\ \

References

\

\ Kent WJ.\ BLAT - the BLAST-like \ alignment tool. Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518

\

\ Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J,\ Landrum MJ, McGarvey KM et al.\ RefSeq: an update on mammalian reference sequences.\ Nucleic Acids Res. 2014 Jan;42(Database issue):D756-63.\ PMID: 24259432; PMC: \ PMC3965018

\

\ Pruitt KD, Tatusova T, Maglott DR.\ \ NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts \ and proteins.\ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.\ PMID: 15608248; PMC: PMC539979

\ genes 1 allButtonPair on\ compositeTrack on\ dataVersion /gbdb/$D/ncbiRefSeq/ncbiRefSeqVersion.txt\ dbPrefixLabels hg="HGNC" dm="FlyBase" ce="WormBase" rn="RGD" sacCer="SGD" danRer="ZFIN" mm="MGI" xenTro="XenBase"\ dbPrefixUrls hg="http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" dm="http://flybase.org/reports/$$" ce="http://www.wormbase.org/db/gene/gene?name=$$" rn="https://rgd.mcw.edu/rgdweb/search/search.html?term=$$" sacCer="https://www.yeastgenome.org/locus/$$" danRer="https://zfin.org/$$" mm="http://www.informatics.jax.org/marker/$$" xenTro="https://www.xenbase.org/gene/showgene.do?method=display&geneId=$$"\ dragAndDrop subTracks\ group genes\ longLabel RefSeq genes from NCBI\ noInherit on\ priority 2\ shortLabel NCBI RefSeq\ track refSeqComposite\ type genePred\ visibility dense\ chainHg38ReMap NCBI ReMap hg38 chain hg38 Lifting: NCBI ReMap alignments to hg38/GRCh38 0 2 0 0 0 127 127 127 0 0 0 map 1 chainLinearGap medium\ chainMinScore 3000\ longLabel Lifting: NCBI ReMap alignments to hg38/GRCh38\ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91\ matrixHeader A, C, G, T\ otherDb hg38\ parent liftHg38\ priority 2\ shortLabel NCBI ReMap hg38\ track chainHg38ReMap\ type chain hg38\ uMassBrainHistonePeaksNeuron Neuron-specific bed5FloatScore Neuron-specific Brain Histone H3K4me3 from UMMS 3 2 0 0 117 127 127 186 1 0 0 regulation 1 color 0,0,117\ longLabel Neuron-specific Brain Histone H3K4me3 from UMMS\ parent uMassBrainHistoneViewPeaks\ shortLabel Neuron-specific\ subGroups view=Peaks cellType=norm donor=a_pooled sex=mixed age=d_all\ track uMassBrainHistonePeaksNeuron\ type bed5FloatScore\ numtSAssembled NumtS assembled bed 12 . Human NumtS Assembled 0 2 0 60 120 127 157 187 1 0 0

Description and display conventions

\

\ NumtS (Nuclear mitochondrial sequences) are mitochondrial fragments inserted in nuclear genomic sequences. The most credited hypothesis concerning their generation suggests that in presence of mutagenic agents or under stress conditions fragments of mtDNA escape from mitochondria, reach the nucleus and insert into chromosomes during break repair, although NumtS can derive from duplication of genomic fragments. NumtS may be cause of contamination during human mtDNA sequencing and hence frequent false low heteroplasmic evidences have been reported.\ The Bioinformatics group chaired by M.Attimonelli (Bari, Italy) has produced the RHNumtS compilation annotating more than 500 Human NumtS. To allow the scientific community to access to the compilation and to perform genomics comparative analyses inclusive of the NumtS data, the group has designed the Human NumtS tracks below described.\

\ \

\ The NumtS tracks show the High Score Pairs (HSPs) obtained by aligning the mitochondrial reference genome (NC_012920) with the hg18 release of the human genome.\

\
    \
  1. "NumtS (Nuclear mitochondrial Sequences)" Track\

    \ The "NumtS mitochondrial sequences" track shows the mapping of the HSPs returned by BlastN on the nuclear genome. The shading of the items reflects the similarity returned by BlastN, and the direction of the arrows is concordant with the strand of the alignment. For every item, a link pointing to the mitochondrial mapping is provided, thus allowing a fast cross among the NumtS genomic contexts.\

    \
    2. \ \
  2. "NumtS assembled" Track\

    \ The "NumtS assembled" track shows items obtained by assembling HSPs annotated in the "NumtS" track fulfilling the following conditions:\

      \
    • the orientation of their alignments must be concordant.
      • \
    • the distance between them must be less than 2 kb, on the mitochondrial genome as well as on the nuclear genome.
      • \

    \

    \ Exceptions for the second condition arise when a long repetitive element is present between two HSPs.\

    \
    3. \ \
  3. "NumtS on mitochondrion" Track\

    \ The "NumtS on mitochondrion" track shows the mapping of the HSPs on the mitochondrial genome. The shading of the items reflects the similarity returned by BlastN, and the direction of the arrows is concordant with the strand of the alignment. For every item, a link pointing to the nuclear mapping is provided.\

    \ \
  4. "NumtS on mitochondrion with chromosome placement" Track\

    \ The "NumtS on mitochondrion with chromosome placement" shows the mapping of the HSPs on the mitochondrial genome, but the items are coloured according to the colours assigned to each human chromosome on the UCSC genome browser. No shading is here provided. For every item, a link pointing to the nuclear mapping is provided.\

    \
\ \

Methods

\

\ NumtS mappings were obtained by running Blast2seq (program: BlastN) between each chromosome of of the Human Genome hg18 build and the human mitochondrial reference sequence (rCRS, AC: NC_012920), fixing the e-value threshold to 1e-03. The assembling of the HSPs was performed with spreadsheet interpolation and manual inspection.\

\ \

Verification

\

\ NumtS predicted in silico were validated by carrying out PCR amplification and sequencing on blood-extracted DNA of a healthy individual of European origin. PCR amplification was successful for 275 NumtS and provided amplicons of the expected length. All PCR fragments were sequenced on both strands, and submitted to the EMBL databank.\

\

\ Furthermore, 541 NumtS were validated by merging NumtS nuclear coordinates with HapMap annotations. Our analysis has been carried on eight HapMap individuals (NA18517, NA18507, NA18956, NA19240, NA18555, NA12878, NA19129, NA12156). For each sample, clones with a single best concordant placement (according to the fosmid end-sequence-pair analysis described in Kidd et al., 2008), have been considered. The analysis showed that 541 NumtS (at least 30bp for each one) had been sequenced in such samples.\

\ \

Credits

\

\ These data were provided by Domenico Simone and Marcella Attimonelli at Department of Biochemistry and Molecular Biology "Ernesto Quagliariello" (University of Bari, Italy). Primer designing was carried out by Francesco Calabrese and Giuseppe Mineccia. PCR validation was carried out by Martin Lang, Domenico Simone and Giuseppe Gasparre. Merging with HapMap annotations has been performed by Domenico Simone.\

\ \

References

\ \

\ Kidd JM, Cooper GM, Donahue WF, Hayden HS, Sampas N, Graves T, Hansen N, Teague B, Alkan C,\ Antonacci F et al.\ \ Mapping and sequencing of structural variation from eight human genomes.\ Nature. 2008 May 1;453(7191):56-64.\ PMID: 18451855; PMC: PMC2424287\

\ \

\ Lascaro D, Castellana S, Gasparre G, Romeo G, Saccone C, Attimonelli M.\ \ The RHNumtS compilation: features and bioinformatics approaches to locate and quantify Human\ NumtS.\ BMC Genomics. 2008 Jun 3;9:267.\ PMID: 18522722; PMC: PMC2447851\

\ \

\ Simone D, Calabrese FM, Lang M, Gasparre G, Attimonelli M.\ \ The reference human nuclear mitochondrial sequences compilation validated and implemented on the\ UCSC genome browser.\ BMC Genomics. 2011 Oct 20;12:517.\ PMID: 22013967; PMC: PMC3228558\

\ \ rep 1 color 0,60,120\ html numtSeq\ longLabel Human NumtS Assembled\ parent numtSeq\ priority 2\ shortLabel NumtS assembled\ track numtSAssembled\ type bed 12 .\ useScore 1\ wgEncodeBuOrchidV2 ORChID V2 bigWig -0.666250 1.584000 OH Radical Cleavage Intensity Database (ORChID) V2 from ENCODE/Boston Univ 2 2 0 0 0 127 127 127 0 0 0 map 0 longLabel OH Radical Cleavage Intensity Database (ORChID) V2 from ENCODE/Boston Univ\ parent wgEncodeBuOrchidSignalView\ shortLabel ORChID V2\ subGroups view=Signal\ track wgEncodeBuOrchidV2\ type bigWig -0.666250 1.584000\ panelAppTandRep PanelApp STRs bigBed 9 + Genomics England PanelApp Short Tandem Repeats 3 2 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg19/panelApp/tandRep.bb\ filterValues.confidenceLevel 3,2,1,0\ itemRgb on\ labelFields hgncSymbol\ longLabel Genomics England PanelApp Short Tandem Repeats\ mouseOverField mouseOverField\ parent panelApp on\ shortLabel PanelApp STRs\ skipEmptyFields on\ skipFields chrom,chromStart,blockStarts,blockSizes,mouseOverField\ track panelAppTandRep\ type bigBed 9 +\ urls omimGene="https://www.omim.org/entry/$$" ensemblID="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$"\ visibility pack\ polyaPredict Poly(A) bed 8 . Predicted Poly(A) Sites Using an SVM 0 2 102 0 153 178 127 204 0 0 0 rna 1 color 102,0,153\ exonNumbers off\ longLabel Predicted Poly(A) Sites Using an SVM\ origAssembly hg18\ parent polyA\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ priority 2\ shortLabel Poly(A)\ track polyaPredict\ type bed 8 .\ polyASeqSitesBrainRev PolyA-Seq Brain bigWig 0.340000 21771.560547 Poly(A)-tail sequencing of Brain from Merck (Rev strand) 2 2 0 0 0 127 127 127 0 0 0 rna 0 color 0,0,0\ longLabel Poly(A)-tail sequencing of Brain from Merck (Rev strand)\ parent polyASeqSitesSignalView\ shortLabel PolyA-Seq Brain\ subGroups view=Signal tissType=Brain strand=rev\ track polyASeqSitesBrainRev\ type bigWig 0.340000 21771.560547\ prsAtrialFib PRS-E Atrial Fib bigBed 8 + Polygenic Risk Scores eMERGE: Atrial Fibrillation 1 2 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg19/prsEmerge/atrial_fibrilation.bb\ longLabel Polygenic Risk Scores eMERGE: Atrial Fibrillation\ parent prsEmerge pack\ shortLabel PRS-E Atrial Fib\ track prsAtrialFib\ type bigBed 8 +\ pTriplo pTriplosensitivity bigBed 9 + 2 Probability of triplosensitivity 3 2 0 0 0 127 127 127 0 0 0 https://www.deciphergenomics.org/search?q=$$ phenDis 1 bigDataUrl /gbdb/hg19/bbi/dosageSensitivityCollins2022/pTriploDosageSensitivity.bb\ filter.pTriplo 0\ filterByRange.pTriplo on\ filterLimits.pTriplo 0:1\ itemRgb on\ longLabel Probability of triplosensitivity\ mouseOver $name, $ensGene, pTriplo:$pTriplo\ parent dosageSensitivity on\ shortLabel pTriplosensitivity\ showCfg on\ track pTriplo\ type bigBed 9 + 2\ url https://www.deciphergenomics.org/search?q=$$\ urlLabel Link to DECIPHER\ visibility pack\ ncbiRefSeqCurated RefSeq Curated genePred NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*) 1 2 12 12 120 133 133 187 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 12,12,120\ idXref ncbiRefSeqLink mrnaAcc name\ longLabel NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)\ parent refSeqComposite on\ priority 2\ shortLabel RefSeq Curated\ track ncbiRefSeqCurated\ ReMapTFs ReMap ChIP-seq bigBed 9 + ReMap Atlas of Regulatory Regions 4 2 0 0 0 127 127 127 0 0 0

Description

\

\ This track represents the ReMap Atlas of regulatory regions, which consists of a\ large-scale integrative analysis of all Public ChIP-seq data for transcriptional\ regulators from GEO, ArrayExpress, and ENCODE. \

\ \

\ Below is a schematic diagram of the types of regulatory regions: \

    \
  • ReMap 2022 Atlas (all peaks for each analyzed data set)
    • \
  • ReMap 2022 Non-redundant peaks (merged similar target)
    • \
  • ReMap 2022 Cis Regulatory Modules
    • \
\

\ \ \ \

Display Conventions and Configuration

\
    \
  • \ Each transcription factor follows a specific RGB color.\
    • \
  • \ ChIP-seq peak summits are represented by vertical bars.\
    • \
  • \ Hsap: A data set is defined as a ChIP/Exo-seq experiment in a given\ GEO/ArrayExpress/ENCODE series (e.g. GSE41561), for a given TF (e.g. ESR1), in\ a particular biological condition (e.g. MCF-7).\
    Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE41561.ESR1.MCF-7).\
    • \
  • \ Atha: The data set is defined as a ChIP-seq experiment in a given series\ (e.g. GSE94486), for a given target (e.g. ARR1), in a particular biological\ condition (i.e. ecotype, tissue type, experimental conditions; e.g.\ Col-0_seedling_3d-6BA-4h).\
    Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE94486.ARR1.Col-0_seedling_3d-6BA-4h).\
    • \
\ \

Methods

\

\ This 4th release of ReMap (2022) presents the analysis of a total of 8,103 \ quality controlled ChIP-seq (n=7,895) and ChIP-exo (n=208) data sets from public\ sources (GEO, ArrayExpress, ENCODE). The ChIP-seq/exo data sets have been mapped\ to the GRCh38/hg38 human assembly. The data set is defined as a ChIP-seq \ experiment in a given series (e.g. GSE46237), for a given TF (e.g. NR2C2), in a\ particular biological condition (i.e. cell line, tissue type, disease state, or\ experimental conditions; e.g. HELA). Data sets were labeled by concatenating\ these three pieces of information, such as GSE46237.NR2C2.HELA. \ \

\

Those merged analyses cover a total of 1,211 DNA-binding proteins\ (transcriptional regulators) such as a variety of transcription factors (TFs),\ transcription co-activators (TCFs), and chromatin-remodeling factors (CRFs) for\ 182 million peaks. \

\ \ \ \

GEO & ArrayExpress

\

\ Public ChIP-seq data sets were extracted from Gene Expression Omnibus (GEO) and\ ArrayExpress (AE) databases. For GEO, the query\ \ '('chip seq' OR 'chipseq' OR\ 'chip sequencing') AND 'Genome binding/occupancy profiling by high throughput\ sequencing' AND 'homo sapiens'[organism] AND NOT 'ENCODE'[project]'\ \ was used to return a list of all potential data sets to analyze, which were then manually \ assessed for further analyses. Data sets involving polymerases (i.e. Pol2 and\ Pol3), and some mutated or fused TFs (e.g. KAP1 N/C terminal mutation, GSE27929)\ were excluded.\

\ \

ENCODE

\

\ Available ENCODE ChIP-seq data sets for transcriptional regulators from the\ ENCODE portal were processed with the\ standardized ReMap pipeline. The list of ENCODE data was retrieved as FASTQ files from the\ ENCODE portal\ using the following filters:\

    \
  • Assay: "ChIP-seq"
    • \
  • Organism: "Homo sapiens"
    • \
  • Target of assay: "transcription factor"
    • \
  • Available data: "fastq" on 2016 June 21st
    • \
\ Metadata information in JSON format and FASTQ files\ were retrieved using the Python requests module.\

\ \

ChIP-seq processing

\

\ Both Public and ENCODE data were processed similarly. Bowtie 2 (PMC3322381) (version 2.2.9) with options -end-to-end -sensitive was used to align all\ reads on the genome. Biological and technical\ replicates for each unique combination of GSE/TF/Cell type or Biological condition\ were used for peak calling. TFBS were identified using MACS2 peak-calling tool\ (PMC3120977) (version 2.1.1.2) in order to follow ENCODE ChIP-seq guidelines,\ with stringent thresholds (MACS2 default thresholds, p-value: 1e-5). An input data\ set was used when available.\

\ \ \

Quality assessment

\

\ To assess the quality of public data sets, a score was computed based on the\ cross-correlation and the FRiP (fraction of reads in peaks) metrics developed by\ the ENCODE Consortium (https://genome.ucsc.edu/ENCODE/qualityMetrics.html). Two\ thresholds were defined for each of the two cross-correlation ratios (NSC,\ normalized strand coefficient: 1.05 and 1.10; RSC, relative strand coefficient:\ 0.8 and 1.0). Detailed descriptions of the ENCODE quality coefficients can be\ found at https://genome.ucsc.edu/ENCODE/qualityMetrics.html. The\ phantompeak tools suite was used\ (https://code.google.com/p/phantompeakqualtools/) to compute\ RSC and NSC.\

\

\ Please refer to the ReMap 2022, 2020, and 2018 publications for more details\ (citation below).\

\ \ \ \

Data Access

\

\ ReMap Atlas of regulatory regions data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ Individual BED files for specific TFs, cells/biotypes, or data sets can be\ found and downloaded on the ReMap website.\

\ \

References

\ \

\ Chèneby J, Gheorghe M, Artufel M, Mathelier A, Ballester B.\ \ ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-\ seq experiments.\ Nucleic Acids Res. 2018 Jan 4;46(D1):D267-D275.\ PMID: 29126285; PMC: PMC5753247\

\

\ Chèneby J, Ménétrier Z, Mestdagh M, Rosnet T, Douida A, Rhalloussi W, Bergon A, Lopez\ F, Ballester B.\ \ ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis\ DNA-binding sequencing experiments.\ Nucleic Acids Res. 2020 Jan 8;48(D1):D180-D188.\ PMID: 31665499; PMC: PMC7145625\

\

\ Griffon A, Barbier Q, Dalino J, van Helden J, Spicuglia S, Ballester B.\ \ Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory\ landscape.\ Nucleic Acids Res. 2015 Feb 27;43(4):e27.\ PMID: 25477382; PMC: PMC4344487\

\

\ Hammal F, de Langen P, Bergon A, Lopez F, Ballester B.\ \ ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an\ integrative analysis of DNA-binding sequencing experiments.\ Nucleic Acids Res. 2022 Jan 7;50(D1):D316-D325.\ PMID: 34751401; PMC: PMC8728178\

\ \ regulation 1 bigDataUrl /gbdb/hg19/reMap/reMap2022.bb\ denseCoverage 100\ filterLabel.Biotypes Biotypes (cell lines, tissues...)\ filterLabel.TF Transcriptional regulators\ filterText.Biotypes *\ filterText.TF *\ filterType.Biotypes multipleListOnlyOr\ filterType.TF multipleListOnlyOr\ filterValues.Biotypes 12Z,143B,226LDM,22Rv1,402-91,501-mel,697,786-M1A,786-O,81-3,A-137,A139,A-1847,A1A3,A2780,A2780cis,A-375,A-498,A-549,A-673,A-673-clone-Asp114,AB32,AB-LCL,AC16,adipocyte,adrenal-gland,adult-duodenal-cell,AF22,aggregated-lymphoid-nodules,AGS,ALL,ALL-SIL,AMIPS6,AMIPS8,AML,AMLPZ12,anterior-temporal-cortex,aorta,aortic-endothelial-cell,aortic-smooth-muscle-cell,arterial-endothelial-cells,artery,ASC,ascending-aorta,Aska-SS,AsPC-1,astrocyte,BA10,BA40,BC-3,BCBL-1,B-cell,BCP-ALL,BCR-ABL1,BDMC,BE2C,BEAS-2B,BG01V,BG03,BH-LCLs,BICR,BIN-67,BJ,BJ1-hTERT,BJAB,BL41,BLM,blood,BLUE1,bonchial,BPE,BPLER,brain-prefrontal-cortex,breast,breast-cancer,breast-organoid,BT-16,BT-20,BT-474,BT-549,BxPC-3,CA46,Caco-2,CAL-1,Calu-1,Calu-3,cardiac,cardiac-muscle,cardiomyocyte,cartilage,CaSki,CC-LP-1,CCLP1,ccRCC,CCRF-CEM,CD14,CD34,CD34-pos,CD4,CD4-pos,CD8,CFPAC-1,CHL-1,chondrosarcoma,choroid-plexus,CHP-134,CHRF28811,CLB-Ga,CLL,COG-N-415,COLO-205,COLO-320,COLO-741,COLO-800,COLO-829,colon,colorectal-cancer,coronary-artery,cortical-interneuron,CRL-7250,CTV-1,CUTLL1,D283-Med,D341-Med,D54,DAOY,DC,delta-47,dendrite,dermal,dermal-fibroblast,Detroit-562,DKO,DLBCL,DLD-1,DND41,DOHH2,dopaminergic-neuron,DU145,DU528,DUCAP,EDOMIPS2,EM-3,embryonic-kidney,EndoC-betaH2,endoderm,endometrial-epithelial-cells,endometrial-stromal-cell,endometrioid-adenocarcinoma,endometrium,endothelial,EP156T,epididymis,epithelial,erythroblast,erythroid,erythroid-progenitor,ESF,ESO-26,esophagus,esophagus-muscularis-mucosa,esophagus-squamous-epithelium,FaDu,fetal,fibroblast,FLP143HA,FLP76,foregut,foreskin,FT282,G296S,G-401,G523NS,gastric-epithelial-cell,gastrocnemius-medialis,gastroesophageal-sphincter,GBM1A,GEN2-2,GIC,GIST,GIST48,GIST882,GIST-T1,glioblastoma,glioma,GM00011,GM01310,GM04025,GM04604,GM04648,GM06077,GM06170,GM06990,GM08714,GM09236,GM09237,GM10248,GM10266,GM10847,GM12801,GM12864,GM12865,GM12866,GM12867,GM12868,GM12869,GM12870,GM12871,GM12872,GM12873,GM12874,GM12875,GM12878,GM12891,GM12892,GM13976,GM13977,GM15510,GM15850,GM17942,GM18505,GM18526,GM18951,GM19099,GM19193,GM20000,GM23248,GM23338,GP5D,GRANT-A519,GSC,GSC23,GSC8-11,H-1,H69,H9,HaCaT,HAEC,HAP1,HASMC,HBE,HBTEC,HCAEC,HCASMC,HCC1143,HCC1187,HCC1395,HCC1428,HCC1599,HCC1806,HCC1937,HCC1954,HCC2157,HCC2814,HCC70,HCC95,HCCLM3,HCT-116,HCT-15,HDF,heart,HEC-1-A,HEC-1-B,HEE,HEK,HEK293,HEK293-FT,HEK293T,HEL,HeLa,HeLa-B2,HeLa-Kyoto,HeLa-S3,HeLa-Tet-On,HEP,HEP10-01008-LCLs,HEP14-00120-LCLs,HEP14-0079-LCLs,HEP14-0080-LCLs,Hep-3B2-1-7,HepaRG,hepatocellular-carcinoma-cell,hepatocyte,Hep-G2,hESC,hESC-1,HEY-A8,HFF,HFOB,HGrC1,HIES,hiF-T,hippocampus,hiPSC,HKC,HL-60,hMADS,HMEC-1,HMELBRAF,HMLE,HMLER,HMLE-Twist-ER,HMS001,hMSC,hMSC-TERT,hMSC-TERT4,HNPC,HNSC,HPBALL,Hs-352-Sk,HS578T,HSPC,HSPC-CD34,HSPC-CD34pos,HS-SY-2,HT-1080,HT29,hTERT-HME1,HUCCT1,HUDEP-2,HUES-64,HUES-8,HUG1N,Huh-7,HUVEC-C,ID00014,ID00015,ID00016,IM95,IMEC,IMR-5,IMR-90,IMS-M2,induced-endothelial-cell,intestinal-cell,Ishikawa,islet,JD-LCLs,JHU-029,J-Lat,JL-LCLs,JMSU-1,Jurkat,K-562,Karpas-299,Karpas-422,KARPAS422,Karpas-45,Kasumi-1,KATO-III,KB,Kelly,keratinocyte,KerCT,KG-1,KGN,kidney,kidney-cortex,KK-1,KMS-11,KNS-62,KOPN-8,KOPT-K1,KYSE-150,KYSE-70,L1236,L826,LA-N-5,LA-N-6,LAPC-4,LBCL,LCL,LCLGM10861,leiomyoma,leukemia,LHSAR,liver,LK2,LNAR,LNCaP,LNCaP-95,LNCaP-abl,LNCaP-C4-2,LNCaP-C4-2B,LNCaP-clone-FGC,LNCaP-FGC,Loucy,LoVo,LOX-IMVI,LP1,LPS141,LREX,LS174T,LS180,LTAD,Lu-130,lung,LX2,lymphoblast,lymphocyte,macrophage,MALME-3,mammary-epithelial-cell,MCF-10A,MCF10A-Er-Src,MCF-10AT1,MCF-10CA1a,MCF-7,MCF-7L,MCF-7-Luc,MCF-7-Luc-Y537S,MCF-7-TAMR-1,MCF7-Tet-On,MCF-7-WS8,MDA-BoM-1833,MDA-MB-134-VI,MDA-MB-157,MDA-MB-231,MDA-MB-361,MDA-MB-435,MDA-MB-436,MDA-MB-453,MDA-MB-468,MDA-Pca-2b,MDM,ME-1,medulloblastoma,Mel270,melanocyte,mesenchymal,metastatic-neuroblastoma,MG-63-3,MIA-PaCa-2,MKN28,MKN74,ML-2,MM1-S,MNNG-HOS,MO91,MOLM-13,MOLM-14,MOLT-3,MOLT-4,monocyte,MPNST,MRC-5,MSTO,Mutu-1,MUTUL,MV4-11,MV4-11-B,MYCN-3,myoblast,myofibroblast,myometrium,myotube,NALM-6,Namalwa,NB-1643,NB4,NB69,NCCIT,NCI-H1048,NCI-H128,NCI-H1299,NCI-H1703,NCI-H1819,NCI-H1963,NCI-H1975,NCI-H2087,NCI-H2107,NCI-H2171,NCI-H23,NCI-H295R,NCI-H3122,NCI-H3396,NCI-H358,NCI-H441,NCI-H460,NCI-H520,NCI-H524,NCI-H526,NCI-H82,NCI-H838,NCI-H889,NCI-H929,nerve,neural,neural-progenitor,neuroblastoma,neuroepithelilal-cells,neuron,neuron-progenitor,neutrophil,NGP,NHEK,NMC24335,NOMO1,NPC,NSC,NT2-D1,NTERA2,NUT,NY15,OACP4-C,OCI-AML-3,OCI-AML3,OCI-Ly1,OCI-Ly10,OCI-Ly19,OCI-Ly3,OCI-Ly7,ocular-melanoma-cell,OE33,omental-fat-pad,OSK,OSKM,osteoblast,OSvK,OSvKM,ovary,OVCA429,OVCAR-3,OVCAR-5,OVCAR-8,OVSAHO,P12,P493-6,PANC-1,pancreas,pancreatic-progenitor,PATU8988,PAVE,PBMC,PC-3,PC-9,PDAC,PEO1,PER-117,peripheral-blood-mononuclear-cell,peripheral-blood-neutrophil,Peyers-patch,PF-382,Pfeiffer,PFSK1,PK-LCLs,placenta,plasmablast,pleural-effusion,pre-B-cell,PrEC,PRIMA2,PRIMA5,primary-B-cell,primary-breast-cancer,primary-bronchial-epithelial,primary-chondrocyte,primary-dermal-fibroblasts,primary-endometrial-stromal-cell,primary-endometrium-cancer,primary-epidermal-keratinocyte,primary-glioblastoma,primary-keratinocyte,primary-lung-fibroblast,primary-monocyte,primary-neutrophil,primary-prostate-cancer,primary-prostate-epithelial-cell,primordial-germ-cell-like-cell,ProEs,proliferating-human-fibroblast,prostate,prostate-cancer,pulmonary-artery,Raji,Ramos,RCC10,RCC4,RCH-ACV,RD,REC-1,Reh,RENVM,retina,Rh18,RH3,RH30,RH4,Rh41,RH5,rhabdomyosarcoma,RKO,RL,RMG-I,RPE,RPMI8402,RS4-11,RWPE-1,RWPE-2,SaOS-2,SCC,SCC-25,SCC-9,SCCOHT-1,SCLC,SCMC,SEM,SET-2,SF8628,SGBS,SH-EP,SHEP-21N,SHI-1,SH-SY5Y,sigmoid-colon,SiHa,SJSA-1,SK-BR-3,SKH1,skin,SKM-1,SK-MEL-147,SK-MEL-239,SK-MEL-28,SK-MEL-5,SK-N-AS,SK-N-BE2,SK-N-BE2-C,SK-N-MC,SKNO-1,SK-N-SH,SK-UT-1,SLK,SMMC-7721,smooth-muscle-cell,SMS-CTR,SMS-KCN,SMS-KCNR,SNU-216,SNU-398,SP-49,spleen,ST-1,stomach,subcutaneous-adipose-tissue,SU-DHL-10,SU-DHL-2,SU-DHL-4,SU-DHL-5,SU-DHL-6,SUIT-2,SUM1315,SUM149,SUM149PT,SUM159,SUM159PT,SUM185,SUM229PE,SUM44PE,SUP-B15,SVOG-3e,SW1353,SW1783,SW1990,SW480,SW620,SYO-1,T-47D,T-47D-A,T47D-A1-2,T-47D-B,T-47D-MTVL,T778,T98G,TALL-1,TC-32,TC-71,T-cell,TE-5,testis,TF1,Th1,Th17,T-HESCs,thoracic-aorta,THP-1,THP-6,thymocyte,thymus,thyroid-cancer,thyroid-gland,tibial-artery,tibial-nerve,TMD8,tonsil,TOV-21G,T-REx-293,TSU-1621MT,TT,TTC-1240,TTC-549,U266,U266B1,U2932,U2OS,U-87MG,U-937,UACC-257,UACC-62,UAE,UCLA1-hESCs,UCSD-AML1,UM-RC-6,UO-31,UPCI-SCC-090,UTEIPS11,UTEIPS4,UTEIPS6,UTEIPS7,uterus,vagina,VCaP,VCaP-LTAD,VU-SCC-147,WA01,WA09,WERI-Rb-1,WHIM12,WI-38,WI-38VA13,WIBR3,WN8532,WPMY-1,WSU-DLCL2,YCC-3,ZR-75-1,ZR751\ filterValues.TF AATF,ADNP,AEBP2,AFF1,AFF4,AGO1,AHR,AHRR,APC,AR,ARHGAP35,ARID1A,ARID1B,ARID2,ARID3A,ARID3B,ARID4A,ARID4B,ARID5B,ARNT,ARNTL,ARRB1,ASCL1,ASH1L,ASH2L,ASXL1,ASXL3,ATF1,ATF2,ATF3,ATF4,ATF7,ATM,ATOH8,ATRX,ATXN7L3,BACH1,BACH2,BAF155,BAHD1,BAP1,BATF,BATF3,BCL11A,BCL11B,BCL3,BCL6,BCL6B,BCLAF1,BCOR,BDP1,BHLHE22,BHLHE40,BICRA,BMI1,BMPR1A,BNC2,BPTF,BRCA1,BRD1,BRD2,BRD3,BRD4,BRD7,BRD9,BRF1,BRF2,C17orf49,CARM1,CASZ1,CBFA2T2,CBFA2T3,CBFB,CBX1,CBX2,CBX3,CBX4,CBX5,CBX7,CBX8,CC2D1A,CCAR2,CCNT2,CD74,CDC5L,CDK2,CDK6,CDK7,CDK8,CDK9,CDK9-HEXIM1,CDKN1B,CDX2,CEBPA,CEBPB,CEBPD,CEBPG,CEBPZ,CERS6,CHAF1B,CHAMP1,CHD1,CHD2,CHD4,CHD7,CHD8,CIITA,CLOCK,COBLL1,CREB1,CREB3,CREB3L1,CREB5,CREBBP,CREM,CRX,CRY1,CRY2,CSDC2,CSNK2A1,CTBP1,CTBP2,CTCF,CTCFL,CTNNB1,CUX1,CXXC4,CXXC5,DACH1,DAXX,DDX20,DDX21,DDX5,DEAF1,DEK,DIDO1,DLX4,DLX6,DMAP1,DNMT1,DNMT3B,DPF1,DPF2,DR1,DRAP1,DUX4,E2F1,E2F3,E2F4,E2F5,E2F6,E2F7,E2F8,E4F1,EBF1,EBF3,EED,EGR1,EHF,EHMT2,ELF1,ELF2,ELF3,ELF4,ELF5,ELK1,ELK4,ELL,ELL2,EOMES,EP300,EP400,EPAS1,ERF,ERG,ESR1,ESR2,ESRRA,ESRRB,ESRRG,ETS1,ETS2,ETV1,ETV2,ETV4,ETV6,EVI1,EWSR1,EZH1,EZH2,FANCD2,FANCL,FEZF1,FIP1L1,FLI1,FOS,FOSB,FOSL1,FOSL2,FOXA1,FOXA2,FOXF1,FOXF2,FOXJ2,FOXJ3,FOXK1,FOXK2,FOXL2,FOXM1,FOXO1,FOXO1-PAX3,FOXO3,FOXP1,FOXP2,FOXP4,FOXS1,FUS,GABPA,GABPB1,GATA1,GATA2,GATA3,GATA4,GATA6,GATAD1,GATAD2A,GATAD2B,GFI1,GFI1B,GLI1,GLI2,GLI4,GLIS1,GLIS2,GLIS3,GLYR1,GMEB1,GMEB2,GPS2,GR,GRHL1,GRHL2,GSPT2,GTF2A2,GTF2B,GTF2F1,GTF3A,GTF3C2,GTF3C5,HAND2,HBP1,HCFC1,HCFC1R1,HDAC1,HDAC2,HDAC3,HDAC6,HDAC8,HDGF,HES1,HEXIM1,HEXIM1-CDK9,HEY1,HEY2,HHEX,HIC1,HIF1A,HIF3A,HINFP,HIVEP1,HKR1,HLF,HMBOX1,HMGA1,HMGB1,HMGB2,HMGN3,HMGXB4,HNF1A,HNF1B,HNF4A,HNF4G,HNRNPC,HNRNPH1,HNRNPK,HNRNPL,HNRNPLL,HNRNPUL1,HOMEZ,HOXA3,HOXA7,HOXA9,HOXB13,HOXB5,HOXB7,HOXB8,HOXC5,HOXC6,HSF1,HSF2,ICE1,ICE2,ID3,IFNA1,IKZF1,IKZF2,IKZF3,ILF3,ILK,INO80,INSM2,INTS11,INTS13,IRF1,IRF2,IRF2BP2,IRF3,IRF4,IRF5,IRF8,IRF9,ISL1,ISL2,JARID2,JDP2,JMJD1C,JMJD6,JUN,JUNB,JUND,KAT2A,KAT2B,KAT7,KAT8,KDM1A,KDM3A,KDM4A,KDM4B,KDM4C,KDM5A,KDM5B,KDM6B,KLF1,KLF10,KLF12,KLF13,KLF14,KLF15,KLF16,KLF17,KLF3,KLF4,KLF5,KLF6,KLF7,KLF8,KLF9,KMT2A,KMT2B,KMT2C,KMT2D,L3MBTL2,L3MBTL4,LCORL,LDB1,LEF1,LHX2,LIN54,LIN9,LMO1,LMO2,LYL1,MAF,MAF1,MAFB,MAFF,MAFG,MAFK,MAML1,MAML3,MAX,MAZ,MBD1,MBD2,MBD3,MBD4,MCM2,MCM3,MCM5,MCM7,MCRS1,MECOM,MECP2,MED,MED1,MED12,MED25,MED26,MEF2A,MEF2B,MEF2C,MEF2D,MEIS1,MEIS2,MEN1,MGA,MIER1,MITF,MLL4,MLLT1,MLLT3,MLX,MLXIP,MNT,MNX1,MORC2,MPHOSPH8,MRTFA,MRTFB,MSX2,MTA1,MTA2,MTA3,MTF2,MXD4,MXI1,MYB,MYBL2,MYC,MYC-DAXX,MYCN,MYF5,MYNN,MYOCD,MYOD1,MYOG,MZF1,NAB2,NANOG,NBN,NCAPH2,NCBP1,NCOA1,NCOA2,NCOA3,NCOA4,NCOA6,NCOR1,NCOR2,NELFA,NELFCD,NELFE,NEUROD1,NEUROG2,NFAT5,NFATC1,NFATC2,NFATC3,NFE2,NFE2L1,NFE2L2,NFIA,NFIB,NFIC,NFIL3,NFIX,NFKB1,NFKB2,NFKBIA,NFKBIZ,NFRKB,NFXL1,NFYA,NFYB,NFYC,NIPBL,NKX2-1,NKX2-5,NKX3-1,NME2,NONO,NOTCH1,NOTCH3,NR0B1,NR1H2,NR1H3,NR2C1,NR2C2,NR2F1,NR2F2,NR2F6,NR3C1,NR4A1,NR5A1,NR5A2,NRF1,NRIP1,NRL,NSD2,NUFIP1,NUP98-HOXA9,NUTM1,OGG1,OGT,OLIG2,ONECUT1,ONECUT2,OSR2,OTX2,OVOL1,OVOL3,PAF1,PALB2,PARP1,PATZ1,PAX3-FOXO1,PAX5,PAX6,PAX7,PAX8,PAXIP1,PBX1,PBX1-2-3,PBX2,PBX3,PCBP1,PCBP2,PCGF1,PCGF2,PDX1,PGR,PHB2,PHC1,PHF19,PHF20,PHF21A,PHF5A,PHF8,PHIP,PHOX2B,PITX3,PKNOX1,PLAG1,PLRG1,PML,POU2AF1,POU2F1,POU2F2,POU2F3,POU3F1,POU3F2,POU4F2,POU5F1,PPARA,PPARG,PPARGC1A,PRDM1,PRDM10,PRDM12,PRDM14,PRDM15,PRDM2,PRDM4,PRDM6,PREB,PRKDC,PRMT5,PROX1,PRPF4,PSIP1,PTBP1,PTRF,PTTG1,PYGO2,RAD21,RAD51,RARA,RB1,RBAK,RBBP4,RBBP5,RBFOX2,RBM14,RBM15,RBM22,RBM25,RBM34,RBM39,RBP2,RBPJ,RCOR1,REL,RELA,RELB,REPIN1,REST,RFX1,RFX2,RFX3,RFX5,RFXAP,RING1,RLF,RNF2,RORB,RORC,RPA2,RREB1,RUNX1,RUNX1-3,RUNX1-RUNX1T1,RUNX1T1,RUNX2,RUVBL1,RUVBL2,RXR,RXRA,RYBP,SAFB,SAFB2,SALL1,SALL2,SALL3,SALL4,SAP30,SATB1,SCRT1,SETDB1,SETX,SFMBT1,SFPQ,SGF29,SHOX2,SIN3A,SIN3B,SIRT3,SIRT6,SIX1,SIX2,SIX4,SIX5,SKI,SKIL,SMAD1,SMAD1-5,SMAD1-5-8,SMAD2,SMAD2-3,SMAD3,SMAD3-EPAS1,SMAD3-HIF1A,SMAD4,SMAD5,SMARCA2,SMARCA4,SMARCA5,SMARCB1,SMARCC1,SMARCC2,SMARCD3,SMARCE1,SMC1,SMC1A,SMC1A-B,SMC3,SMC4,SNAI1,SNAI2,SNAPC1,SNAPC4,SND1,SNIP1,SNRNP70,SOX10,SOX11,SOX13,SOX2,SOX21,SOX3,SOX4,SOX6,SOX8,SOX9,SP1,SP140L,SP2,SP3,SP4,SP5,SP7,SPDEF,SPI1,SPIB,SPIN1,SRC,SREBF1,SREBF2,SREBP2,SRF,SRSF1,SRSF3,SRSF4,SRSF7,SRSF9,SS18,SS18-SSX,SSRP1,STAG1,STAG2,STAT1,STAT2,STAT3,STAT5A,STAT5B,SUPT16H,SUPT5H,SUPT6H,SUZ12,SVIL,T,TAF1,TAF15,TAF2,TAF3,TAF7,TAF9B,TAL1,TARDBP,TASOR,TBL1X,TBL1XR1,TBP,TBX18,TBX2,TBX21,TBX3,TBX5,TCF12,TCF21,TCF25,TCF3,TCF3-PBX1,TCF4,TCF7,TCF7L2,TCFL5,TCOF1,TEAD1,TEAD2,TEAD4,TERF1,TERF2,TERT,TET2,TFAP2A,TFAP2C,TFAP4,TFCP2,TFDP1,TFDP2,TFE3,TFEB,TFIIIC,TGIF2,THAP1,THAP11,THRA,THRAP3,THRB,TLE3,TOP1,TOP2A,TOX2,TP53,TP63,TP73,TRIM22,TRIM24,TRIM25,TRIM28,TRIP13,TRPS1,TRRAP,TSC22D4,TSHZ1,TSHZ2,TWIST1,U2AF1,U2AF2,UBN1,UBTF,USF1,USF2,USP7,UTX,VDR,VEZF1,WDHD1,WDR5,WRNIP1,WT1,XBP1,XRCC3,XRCC5,XRN2,YAP1,YBX1,YBX3,YY1,YY1AP1,YY2,ZBED1,ZBED2,ZBED4,ZBTB1,ZBTB10,ZBTB11,ZBTB12,ZBTB14,ZBTB16,ZBTB18,ZBTB2,ZBTB20,ZBTB21,ZBTB24,ZBTB26,ZBTB33,ZBTB40,ZBTB42,ZBTB44,ZBTB48,ZBTB49,ZBTB5,ZBTB6,ZBTB7A,ZBTB7B,ZBTB8A,ZC3H11A,ZC3H8,ZEB1,ZEB2,ZFP14,ZFP28,ZFP3,ZFP36,ZFP37,ZFP41,ZFP42,ZFP57,ZFP64,ZFP69,ZFP69B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activity - read counts bigWig FANTOM5: TSS activity per sample read counts 0 2 0 0 0 127 127 127 0 0 0

Description

\

\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\

\ \

Display Conventions and Configuration

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\ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

\ \

Methods

\

Protocol

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\ Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE\ (Kanamori-Katyama et al. 2011).\

    \
  • hCAGE
    • \
  • LQhCAGE
    • \
\

\

Samples

\

\ Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\

    \
  • Primary cell
    • \
  • Tissue
    • \
  • Cell Line
    • \
  • Time course
    • \
  • Fractionation
    • \
\

\

TSS peaks and enhancers

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\ TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They \ are named as "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or\ "p@CHROM:START..END,STRAND" otherwise. The CAGE data is also used to produce an atlas of active, in\ vivo-transcribed enhancers (Andersson et al. 2014). The summary tracks consist of the TSS (CAGE)\ peaks, and summary profiles of TSS activities (total and maximum values). The summary track consists of the\ following tracks.\

    \
  • TSS (CAGE) peaks\
      \
    • the robust peaks
      • \
    \
  • Enhancers
    • \ \
  • TSS summary profiles\
      \
    • Total counts and TPM (tags per million) in all the samples
      • \
    • Maximum counts and TPM among the samples
      • \
    \
    • \
\ \

TSS activity

\

\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag\ starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read\ counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as\ TPM (tags per million).\

\ \
\
Categories of individual samples
\
- Cell Line hCAGE
\
- Cell Line LQhCAGE
\
- fractionation hCAGE
\
- Primary cell hCAGE
\
- Primary cell LQhCAGE
\
- Time course hCAGE
\
- Tissue hCAGE
\
\ \

FANTOM-NET enhancers

\

\ A set of enhancers consist of the ones identified by Andersson et al. 2014 and the ones by Hirabayashi\ et al. 2019

\ \

FANTOM CAT

\

\ FANTOM CAGE associated transcriptome (FANTOM CAT) is a meta-assembly where FANTOM5 CAGE datasets\ were integrated with transcript models from diverse sources. Transcription Initiation Evidence Score\ (TIEScore) is a custom metric that evaluates the properties of a pair of CAGE cluster and transcript\ model to quantify the likelihood that the corresponding CAGE transcription start site (TSS) is\ genuine. TIEScore was first applied to each of the five transcript model collections separately\ and then merged into a non-redundant transcript set. Specifically, the transcript models from\ GENCODEv19 were used as the initial reference to sequentially overlay onto them the transcripts\ from the other four collections, in sequence of Human BodyMap 2.0, miTranscriptome, ENCODE, and\ FANTOM5 RNA-seq assembly. For more details, please refer to Hon et al. 2017.\

\ \

Data Access

\

\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.

\ \

Credits

\

\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.

\ \

References

\

\ Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C,\ Suzuki T et al.\ \ An atlas of active enhancers across human cell types and tissues.\ Nature. 2014 Mar 27;507(7493):455-461.\ PMID: 24670763; PMC: PMC5215096\

\ \

\ FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\ Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\ \ A promoter-level mammalian expression atlas.\ Nature. 2014 Mar 27;507(7493):462-70.\ PMID: 24670764; PMC: PMC4529748\

\ \

\ Hirabayashi S, Bhagat S, Matsuki Y, Takegami Y, Uehata T, Kanemaru A, Itoh M, Shirakawa K, Takaori-\ Kondo A, Takeuchi O et al.\ \ NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements.\ Nat Genet. 2019 Sep;51(9):1369-1379.\ PMID: 31477927\

\ \

\ Hon CC, Ramilowski JA, Harshbarger J, Bertin N, Rackham OJ, Gough J, Denisenko E, Schmeier S,\ Poulsen TM, Severin J et al.\ \ An atlas of human long non-coding RNAs with accurate 5' ends.\ Nature. 2017 Mar 9;543(7644):199-204.\ PMID: 28241135; PMC: PMC6857182\

\ \ \

\ Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\ N, Daub CO et al.\ \ Unamplified cap analysis of gene expression on a single-molecule sequencer.\ Genome Res. 2011 Jul;21(7):1150-9.\ PMID: 21596820; PMC: PMC3129257\

\ \

\ Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\ Ishikawa-Kato S et al.\ \ Gateways to the FANTOM5 promoter level mammalian expression atlas.\ Genome Biol. 2015 Jan 5;16(1):22.\ PMID: 25723102; PMC: PMC4310165\

\ regulation 0 boxedCfg on\ compositeTrack on\ dataVersion FANTOM5 phase2.5\ dimensions dimX=sequenceTech dimY=category dimA=strand\ html fantom5.html\ longLabel FANTOM5: TSS activity per sample read counts\ priority 2\ shortLabel TSS activity - read counts\ showSubtrackColorOnUi off\ sortOrder category=+ sequenceTech=+\ subGroup1 sequenceTech Sequence_Tech hCAGE=hCAGE LQhCAGE=LQhCAGE\ subGroup2 category Category cellLine=cellLine fractionation=fractionation primaryCell=primaryCell tissue=tissue AoSMC_response_to_FGF2=AoSMC_response_to_FGF2_timecourse AoSMC_response_to_IL1b=AoSMC_response_to_IL1b_timecourse ES_to_cardiomyocyte=ES_to_cardiomyocyte_timecourse Embryoid_body_to_melanocyte=Embryoid_body_to_melanocyte_timecourse Epithelial_to_mesenchymal=Epithelial_to_mesenchymal_timecourse Human_iPS_to_neuron_Downs_syndrome_1=Human_iPS_to_neuron_Downs_syndrome_1_timecourse Human_iPS_to_neuron_Downs_syndrome_2=Human_iPS_to_neuron_Downs_syndrome_2_timecourse Human_iPS_to_neuron_wt_1=Human_iPS_to_neuron_wt_1_timecourse Human_iPS_to_neuron_wt_2=Human_iPS_to_neuron_wt_2_timecourse Lymphatic_EC_response_to_VEGFC=Lymphatic_EC_response_to_VEGFC_timecourse MCF7_response_to_EGF=MCF7_response_to_EGF_timecourse MCF7_response_to_HRG=MCF7_response_to_HRG_timecourse MSC_to_adipocyte_human=MSC_to_adipocyte_human_timecourse Macrophage_influenza_infection=Macrophage_influenza_infection_timecourse Macrophage_response_to_LPS=Macrophage_response_to_LPS_timecourse Myoblast_to_myotube_wt_and_DMD=Myoblast_to_myotube_wt_and_DMD_timecourse Preadipocyte_to_adipocyte=Preadipocyte_to_adipocyte_timecourse Rinderpest_infection_series=Rinderpest_infection_series_timecourse Saos_calcification=Saos_calcification_timecourse timecourse=other_samples_in_timecourse\ subGroup3 strand Strand forward=forward reverse=reverse\ superTrack fantom5\ track TSS_activity_read_counts\ type bigWig\ visibility hide\ cpgIslandExtUnmasked Unmasked CpG bed 4 + CpG Islands on All Sequence (Islands < 300 Bases are Light Green) 0 2 0 100 0 128 228 128 0 0 0

Description

\ \

CpG islands are associated with genes, particularly housekeeping\ genes, in vertebrates. CpG islands are typically common near\ transcription start sites and may be associated with promoter\ regions. Normally a C (cytosine) base followed immediately by a \ G (guanine) base (a CpG) is rare in\ vertebrate DNA because the Cs in such an arrangement tend to be\ methylated. This methylation helps distinguish the newly synthesized\ DNA strand from the parent strand, which aids in the final stages of\ DNA proofreading after duplication. However, over evolutionary time,\ methylated Cs tend to turn into Ts because of spontaneous\ deamination. The result is that CpGs are relatively rare unless\ there is selective pressure to keep them or a region is not methylated\ for some other reason, perhaps having to do with the regulation of gene\ expression. CpG islands are regions where CpGs are present at\ significantly higher levels than is typical for the genome as a whole.

\ \

\ The unmasked version of the track displays potential CpG islands\ that exist in repeat regions and would otherwise not be visible\ in the repeat masked version.\

\ \

\ By default, only the masked version of the track is displayed. To view the\ unmasked version, change the visibility settings in the track controls at\ the top of this page.\

\ \

Methods

\ \

CpG islands were predicted by searching the sequence one base at a\ time, scoring each dinucleotide (+17 for CG and -1 for others) and\ identifying maximally scoring segments. Each segment was then\ evaluated for the following criteria:\ \

    \ \
  • GC content of 50% or greater
    • \ \
  • length greater than 200 bp
    • \ \
  • ratio greater than 0.6 of observed number of CG dinucleotides to the expected number on the \ \ basis of the number of Gs and Cs in the segment
    • \
\

\

\ The entire genome sequence, masking areas included, was\ used for the construction of the track Unmasked CpG.\ The track CpG Islands is constructed on the sequence after\ all masked sequence is removed.\

\ \

The CpG count is the number of CG dinucleotides in the island. \ The Percentage CpG is the ratio of CpG nucleotide bases\ (twice the CpG count) to the length. The ratio of observed to expected \ CpG is calculated according to the formula (cited in \ Gardiner-Garden et al. (1987)):\ \ 

    Obs/Exp CpG = Number of CpG * N / (Number of C * Number of G)
\ \ where N = length of sequence.

\

\ The calculation of the track data is performed by the following command sequence:\ 

\
twoBitToFa assembly.2bit stdout | maskOutFa stdin hard stdout \\\
  | cpg_lh /dev/stdin 2> cpg_lh.err \\\
    |  awk '{$2 = $2 - 1; width = $3 - $2;  printf("%s\\t%d\\t%s\\t%s %s\\t%s\\t%s\\t%0.0f\\t%0.1f\\t%s\\t%s\\n", $1, $2, $3, $5, $6, width, $6, width*$7*0.01, 100.0*2*$6/width, $7, $9);}' \\\
     | sort -k1,1 -k2,2n > cpgIsland.bed\
\ The unmasked track data is constructed from\ twoBitToFa -noMask output for the twoBitToFa command.\

\ \

Data access

\

\ CpG islands and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator.\ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.

\

\ The source for the cpg_lh program can be obtained from\ src/utils/cpgIslandExt/.\ The cpg_lh program binary can be obtained from: http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/cpg_lh (choose "save file")\

\ \

Credits

\ \

This track was generated using a modification of a program developed by G. Miklem and L. Hillier \ (unpublished).

\ \

References

\ \

\ Gardiner-Garden M, Frommer M.\ \ CpG islands in vertebrate genomes.\ J Mol Biol. 1987 Jul 20;196(2):261-82.\ PMID: 3656447\

\ regulation 1 html cpgIslandSuper\ longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green)\ parent cpgIslandSuper hide\ priority 2\ shortLabel Unmasked CpG\ track cpgIslandExtUnmasked\ vegaPseudoGene Vega Pseudogenes genePred vegaPep Vega Annotated Pseudogenes and Immunoglobulin Segments 0 2 30 130 210 142 192 232 0 0 31 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY,chr6_apd_hap1,chr6_cox_hap2,chr6_dbb_hap3,chr6_mann_hap4,chr6_mcf_hap5,chr6_qbl_hap6,chr6_ssto_hap7, http://vega.sanger.ac.uk/Homo_sapiens/transview?transcript=$$

Description and Methods

\

\ This track shows gene annotations from the Vertebrate Genome Annotation (Vega)\ database. Annotations are divided into two subtracks from the \ Vega Human Genome Annotation project: \

    \
  • Vega Protein-Coding and Non-Coding Gene Annotations\
  • Vega Annotated Pseudogenes and Immunoglobulin Segments\
\ \

\ The following information is an excerpt from the\ \ Vertebrate Genome Annotation home page:

\

\ "The Vega database\ is designed to be a central repository for high-quality, frequently updated\ manual annotation of different vertebrate finished genome sequence.\ Vega attempts to present consistent high-quality curation of the published\ chromosome sequences. Finished genomic sequence is analysed on a\ clone-by-clone basis using\ a combination of similarity searches against DNA and protein databases\ as well as a series of ab initio gene predictions (GENSCAN, Fgenes).\ The annotation is based on supporting evidence only."

\

\ "In addition, comparative analysis using vertebrate datasets such as\ the Riken mouse cDNAs and Genoscope Tetraodon nigroviridis Ecores\ (Evolutionary Conserved Regions) are used for novel gene discovery."

\

\ \

Display Conventions and Configuration

\

\ This track follows the display conventions for\ gene prediction\ tracks. Transcript\ type (and other details) may be found by clicking on the transcript\ identifier which forms the outside link to the Vega transcript details page.\ Further information on the gene and transcript classification may be found\ here.\

\ \

Credits

\

\ Thanks to Steve Trevanion at the\ \ Wellcome Trust Sanger Institute \ for providing the GTF and FASTA files for the Vega annotations. Vega \ acknowledgements and publications are listed \ here.\ genes 1 color 30,130,210\ html vegaGeneComposite\ longLabel Vega Annotated Pseudogenes and Immunoglobulin Segments\ parent vegaGeneComposite\ priority 2\ shortLabel Vega Pseudogenes\ track vegaPseudoGene\ covidHgiGwas COVID GWAS v3 bigLolly 9 + GWAS meta-analyses from the COVID-19 Host Genetics Initiative 0 2.1 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,

Description

\

\ This track set shows GWAS meta-analyses from the \ \ COVID-19 Host Genetics Initiative (HGI): \ a collaborative effort to facilitate \ the generation, analysis and sharing of COVID-19 host genetics research.\ The COVID-19 HGI organizes meta-analyses across multiple studies contributed by \ partners world-wide\ to identify the genetic determinants of SARS-CoV-2 infection susceptibility and disease severity \ and outcomes. Moreover, the COVID-19 HGI also aims to provide a platform for study partners to \ share analytical results in the form of summary statistics and/or individual level data where \ possible.\

\ \

\ The specific phenotypes studied by the COVID-19 HGI are those that benefit from maximal sample \ size: primary analysis on disease severity. Two meta-analyses are represented in this track:\

\ \
    \
  • ANA_C2_V2: covid vs. population (6696 cases from 18 studies)
    • \
  • ANA_B2_V2: hospitalized covid vs. population (3199 cases from 8 studies)
    • \
\ \

Display Conventions

\

\ Displayed items are colored by GWAS effect: red for positive, blue for negative. \ The height of the item reflects the effect size. The effect size, defined as the \ contribution of a SNP to the genetic variance of the trait, was measured as beta coefficient \ (beta). The higher the absolute value of the beta coefficient, the stronger the effect.\ The color saturation indicates statistical significance: p-values smaller than 1e-5\ are brightly colored (bright red\   \ , bright blue\   \ ),\ those with less significance (p >= 1e-5) are paler (light red\   \ , light blue\   \ ). For better visualization of the data, only SNPs with p-values smaller than 1e-3 are \ displayed by default. \

\ \

\ Each track has separate display controls and data can be filtered according to the\ number of studies, minimum -log10 p-value, and the\ effect size (beta coefficient), using the track Configure options.\

\ \

\ Mouseover on items shows the rs ID (or chrom:pos if none assigned), both the non-effect \ and effect alleles, the effect size (beta coefficient), the p-value, and the number of \ studies.\ Additional information on each variant can be found on the details page by clicking on the item.\

\ \

Methods

\

\ COVID-19 Host Genetics Initiative (HGI) GWAS meta-analysis round 3 (July 2020) results were used \ in this study. Each participating study partner submitted GWAS summary statistics for up to four \ of the COVID-19 phenotype definitions.\

\

\ Data were generated from genome-wide SNP array and whole exome and genome\ sequencing, leveraging the impact of both common and rare variants. The statistical analysis\ performed takes into account differences between sex, ancestry, and date of sample collection. \ Alleles were harmonized across studies and reported allele frequencies are based on gnomAD \ version 3.0 reference data. Most study partners used the SAIGE GWAS pipeline in order \ to generate summary statistics used for the COVID-19 HGI meta-analysis. The summary statistics \ of individual studies were manually examined for inflation, \ deflation, and excessive number of false positives. Qualifying summary statistics were filtered for \ INFO > 0.6 and MAF > 0.0001 prior to meta-analyzing the entirety of the data. \ The meta-analysis was done using inverse variance weighting of effects method, accounting for \ strand differences and allele flips in the individual studies. \

\

\ The meta-analysis results of variants appearing in at least three studies (analysis C2) or two \ studies (all other analyses) were made publicly available.\ The meta-analysis software and workflow are available here. More information about the \ prospective studies, processing pipeline, results and data sharing can be found \ here.\

\ \ \

Data Access

\

\ The data underlying these tracks and summary statistics results are publicly available in \ COVID19-hg Release 3 (June 2020).\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. \ Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.\

\ \

Credits

\

\ Thanks to the COVID-19 Host Genetics Initiative contributors and project leads for making these \ data available, and in particular to Rachel Liao, Juha Karjalainen, and Kumar Veerapen at the \ Broad Institute for their review and input during browser track development.\

\ \

References

\ \

\ COVID-19 Host Genetics Initiative.\ \ The COVID-19 Host Genetics Initiative, a global initiative to elucidate the role of host genetic\ factors in susceptibility and severity of the SARS-CoV-2 virus pandemic.\ Eur J Hum Genet. 2020 Jun;28(6):715-718.\ PMID: 32404885; PMC: PMC7220587\

\ \ \ \ varRep 1 autoScale on\ bedNameLabel SNP\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22\ compositeTrack on\ filter._effectSizeAbs 0\ filter.effectSize -13:21\ filter.pValueLog 3\ filter.sourceCount 1\ filterByRange.effectSize on\ filterLabel._effectSizeAbs Minimum effect size +-\ filterLabel.effectSize Effect size range\ filterLabel.sourceCount Minimum number of studies\ filterLimits.effectSize -13:21\ group varRep\ lollyField 21\ longLabel GWAS meta-analyses from the COVID-19 Host Genetics Initiative\ maxHeightPixels 48:75:128\ maxItems 500000\ mouseOver $name $ref/$alt effect $effectSize pval $pValue studies $sourceCount\ noScoreFilter on\ priority 2.1\ shortLabel COVID GWAS v3\ track covidHgiGwas\ type bigLolly 9 +\ viewLimits -13:21\ visibility hide\ covidMuts COVID Rare Harmful Var bigBed 12 + Rare variants underlying COVID-19 severity and susceptibility from the COVID Human Genetics Effort 0 2.2 179 0 0 217 127 127 0 0 0

Description

\

\ This track shows rare variants associated with monogenic congenital defects of immunity to \ the SARS-CoV-2 virus identified by the \ COVID Human Genetic Effort. \ This international consortium aims to discover truly causative variations: those underlying \ severe forms of COVID-19 in previously healthy individuals, and those that make certain \ individuals resistant to infection by the SARS-CoV2 virus despite repeated exposure.\

\

\ The major feature of the small set of variants in this track is that they are functionally tested\ to be deleterious and genetically tested to be disease-causing. \ Specifically, rare variants were predicted to be loss-of-function at human loci known to govern\ interferon (IFN) immunity to influenza virus in patients with life-threatening COVID-19 pneumonia, \ relative to subjects with asymptomatic or benign infection.\ These genetic defects display incomplete penetrance for influenza respiratory distress and only\ appear clinically upon infection with the more virulent SARS-CoV-2.\

\ \

Display Conventions

\

\ Only eight genes with 23 variants are contained in this track. \ Use the links below to navigate to the gene of interest or view \ all eight genes together using the following sessions for \ hg38 or\ hg19.\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Gene NameHuman GRCh37/hg19 AssemblyHuman GRCh38/hg38 Assembly
TLR3\ chr4:186990309-187006252\ chr4:186069152-186088069
IRF7\ chr11:612555-615999\ chr11:612591-615970
UNC93B1\ chr11:67758575-67771593\ chr11:67991100-68004097
TBK1\ chr12:64845840-64895899\ chr12:64452120-64502114
TICAM1\ chr19:4815936-4831754\ chr19:4815932-4831704
IRF3\ chr19:50162826-50169132\ chr19:49659570-49665875
IFNAR1\ chr21:34697214-34732128\ chr21:33324970-33359864
IFNAR2\ chr21:34602231-34636820\ chr21:33229974-33264525
\ \

Methods

\

\ This track uses variant calls in autosomal IFN-related genes from whole exome and genome data \ with a MAF lower than 0.001 (gnomAD v2.1.1) and experimental demonstration of loss-of-function.\ The patient population studied consisted of 659 patients with life-threatening COVID-19 pneumonia \ relative to 534 subjects with asymptomatic or benign infection of varying ethnicities. \ Variants underlying autosomal-recessive or autosomal-dominant deficiencies were identified in \ 23 patients (3.5%) 17 to 77 years of age.\ The proportion of individuals carrying at least one variant was compared between severe cases \ and control cases by means of logistic regression with the likelihood ratio test.\ Principal Component Analysis (PCA) was conducted with Plink v1.9 software on whole exome and \ genome sequencing data with the 1000 Genomes (1kG) Project phase 3 public database as reference.\ Analysis of enrichment in rare synonymous variants of the genes was performed to check the \ calibration of the burden test. \ The odds ratio was also estimated by logistic regression and adjusted for ethnic heterogeneity.\

\ \

Data Access

\

\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator.\ Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.\

\ \

Credits

\

\ Thanks to the COVID Human Genetic Effort contributors for making these data available, and in\ particular to Qian Zhang at the Rockefeller University for review and input during browser track\ development.\

\ \

References

\

\ Zhang Q, Bastard P, Liu Z, Le Pen J, Moncada-Velez M, Chen J, Ogishi M, Sabli IKD, Hodeib S, Korol C\ et al.\ \ Inborn errors of type I IFN immunity in patients with life-threatening COVID-19.\ Science. 2020 Sep 24;.\ PMID: 32972995\

\ \ phenDis 1 bigDataUrl /gbdb/hg19/covidMuts/covidMuts.bb\ color 179,0,0\ defaultLabelFields gene, name\ group phenDis\ labelFields gene, name\ longLabel Rare variants underlying COVID-19 severity and susceptibility from the COVID Human Genetics Effort\ mouseOver $gene $name $rsId Genotype: $genotype; Zygosity: $zygo ; Inheritance: $inhMode\ multiRegionsBedUrl /gbdb/hg19/covidMuts/covidMuts.regions.bed\ noScoreFilter on\ priority 2.2\ shortLabel COVID Rare Harmful Var\ track covidMuts\ type bigBed 12 +\ visibility hide\ metaDome MetaDome bigWig MetaDome - Tolerance Landscape score 2 2.5 0 105 145 127 180 200 0 0 0

Description

\ \

\ The "Constraint scores" container track includes several subtracks showing the results of\ constraint prediction algorithms. These try to find regions of negative\ selection, where variations likely have functional impact. The algorithms do\ not use multi-species alignments to derive evolutionary constraint, but use\ primarily human variation, usually from variants collected by gnomAD (see the\ gnomAD V2 or V3 tracks on hg19 and hg38) or TOPMED (contained in our dbSNP\ tracks and available as a filter). One of the subtracks is based on UK Biobank\ variants, which are not available publicly, so we have no track with the raw data.\ The number of human genomes that are used as the input for these scores are\ 76k, 53k and 110k for gnomAD, TOPMED and UK Biobank, respectively.\

\ \

Note that another important constraint score, gnomAD\ constraint, is not part of this container track but can be found in the hg38 gnomAD\ track.\

\ \ The algorithms included in this track are:\
    \
  1. \ JARVIS - "Junk" Annotation genome-wide Residual Variation Intolerance Score: \ JARVIS scores were created by first scanning the entire genome with a\ sliding-window approach (using a 1-nucleotide step), recording the number of\ all TOPMED variants and common variants, irrespective of their predicted effect,\ within each window, to eventually calculate a single-nucleotide resolution\ genome-wide residual variation intolerance score (gwRVIS). That score, gwRVIS\ was then combined with primary genomic sequence context, and additional genomic\ annotations with a multi-module deep learning framework to infer\ pathogenicity of noncoding regions that still remains naive to existing\ phylogenetic conservation metrics. The higher the score, the more deleterious\ the prediction. This score covers the entire genome, except the gaps.\ \
  2. \ HMC - Homologous Missense Constraint:\ Homologous Missense Constraint (HMC) is a amino acid level measure\ of genetic intolerance of missense variants within human populations.\ For all assessable amino-acid positions in Pfam domains, the number of\ missense substitutions directly observed in gnomAD (Observed) was counted\ and compared to the expected value under a neutral evolution\ model (Expected). The upper limit of a 95% confidence interval for the\ Observed/Expected ratio is defined as the HMC score. Missense variants\ disrupting the amino-acid positions with HMC<0.8 are predicted to be\ likely deleterious. This score only covers PFAM domains within coding regions.\ \
  3. \ MetaDome - Tolerance Landscape Score (hg19 only):\ MetaDome Tolerance Landscape scores are computed as a missense over synonymous \ variant count ratio, which is calculated in a sliding window (with a size of 21 \ codons/residues) to provide \ a per-position indication of regional tolerance to missense variation. The \ variant database was gnomAD and the score corrected for codon composition. Scores \ <0.7 are considered intolerant. This score covers only coding regions.\ \
  4. \ MTR - Missense Tolerance Ratio (hg19 only):\ Missense Tolerance Ratio (MTR) scores aim to quantify the amount of purifying \ selection acting specifically on missense variants in a given window of \ protein-coding sequence. It is estimated across sliding windows of 31 codons \ (default) and uses observed standing variation data from the WES component of \ gnomAD / the Exome Aggregation Consortium Database (ExAC), version 2.0. Scores\ were computed using Ensembl v95 release. The number of gnomAD 2 exomes used here\ is higher than the number of gnomAD 3 samples (125 exoms versus 76k full genomes), \ but this score only covers coding regions.\ \
  5. \ UK Biobank depletion rank score (hg38 only):\ Halldorsson et al. tabulated the number of UK Biobank variants in each\ 500bp window of the genome and compared this number to an expected number\ given the heptamer nucleotide composition of the window and the fraction of\ heptamers with a sequence variant across the genome and their mutational\ classes. A variant depletion score was computed for every overlapping set\ of 500-bp windows in the genome with a 50-bp step size. They then assigned\ a rank (depletion rank (DR)) from 0 (most depletion) to 100 (least\ depletion) for each 500-bp window. Since the windows are overlapping, we\ plot the value only in the central 50bp of the 500bp window, following\ advice from the author of the score,\ Hakon Jonsson, deCODE Genetics. He suggested that the value of the central\ window, rather than the worst possible score of all overlapping windows, is\ the most informative for a position. This score covers almost the entire genome,\ only very few regions were excluded, where the genome sequence had too many gap characters.
\ \

Display Conventions and Configuration

\ \

JARVIS

\

\ JARVIS scores are shown as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The scores were downloaded and converted to a single bigWig file.\ Move the mouse over the bars to display the exact values. A horizontal line is shown at the 0.733\ value which signifies the 90th percentile.

\ See hg19 makeDoc and\ hg38 makeDoc.

\

\ Interpretation: The authors offer a suggested guideline of > 0.9998 for identifying\ higher confidence calls and minimizing false positives. In addition to that strict threshold, the \ following two more relaxed cutoffs can be used to explore additional hits. Note that these\ thresholds are offered as guidelines and are not necessarily representative of pathogenicity.

\ \

\ \ \ \ \ \ \ \ \ \
PercentileJARVIS score threshold
99th0.9998
95th0.9826
90th0.7338
\

\ \

HMC

\

\ HMC scores are displayed as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The highly-constrained cutoff\ of 0.8 is indicated with a line.

\

\ Interpretation: \ A protein residue with HMC score <1 indicates that missense variants affecting\ the homologous residues are significantly under negative selection (P-value <\ 0.05) and likely to be deleterious. A more stringent score threshold of HMC<0.8\ is recommended to prioritize predicted disease-associated variants.\

\ \

MetaDome

\

\ MetaDome data can be found on two tracks, MetaDome and MetaDome All Data.\ The MetaDome track should be used by default for data exploration. In this track\ the raw data containing the MetaDome tolerance scores were converted into a signal ("wiggle")\ track. Since this data was computed on the proteome, there was a small amount of coordinate\ overlap, roughly 0.42%. In these regions the lowest possible score was chosen for display\ in the track to maintain sensitivity. For this reason, if a protein variant is being evaluated,\ the MetaDome All Data track can be used to validate the score. More information\ on this data can be found in the MetaDome FAQ.

\

\ Interpretation: The authors suggest the following guidelines for evaluating\ intolerance. By default, the MetaDome track displays a horizontal line at 0.7 which \ signifies the first intolerant bin. For more information see the MetaDome publication.

\ \

\ \ \ \ \ \ \ \ \ \
ClassificationMetaDome Tolerance Score
Highly intolerant≤ 0.175
Intolerant≤ 0.525
Slightly intolerant≤ 0.7
\

\ \

MTR

\

\ MTR data can be found on two tracks, MTR All data and MTR Scores. In the\ MTR Scores track the data has been converted into 4 separate signal tracks\ representing each base pair mutation, with the lowest possible score shown when\ multiple transcripts overlap at a position. Overlaps can happen since this score\ is derived from transcripts and multiple transcripts can overlap. \ A horizontal line is drawn on the 0.8 score line\ to roughly represent the 25th percentile, meaning the items below may be of particular\ interest. It is recommended that the data be explored using\ this version of the track, as it condenses the information substantially while\ retaining the magnitude of the data.

\ \

Any specific point mutations of interest can then be researched in the \ MTR All data track. This track contains all of the information from\ \ MTRV2 including more than 3 possible scores per base when transcripts overlap.\ A mouse-over on this track shows the ref and alt allele, as well as the MTR score\ and the MTR score percentile. Filters are available for MTR score, False Discovery Rate\ (FDR), MTR percentile, and variant consequence. By default, only items in the bottom\ 25 percentile are shown. Items in the track are colored according\ to their MTR percentile:

\
    \
  • Green items MTR percentiles over 75\
  • Black items MTR percentiles between 25 and 75\
  • Red items MTR percentiles below 25\
  • Blue items No MTR score\
\

\ Interpretation: Regions with low MTR scores were seen to be enriched with\ pathogenic variants. For example, ClinVar pathogenic variants were seen to\ have an average score of 0.77 whereas ClinVar benign variants had an average score\ of 0.92. Further validation using the FATHMM cancer-associated training dataset saw\ that scores less than 0.5 contained 8.6% of the pathogenic variants while only containing\ 0.9% of neutral variants. In summary, lower scores are more likely to represent\ pathogenic variants whereas higher scores could be pathogenic, but have a higher chance\ to be a false positive. For more information see the MTR-Viewer publication.

\ \

Methods

\ \

JARVIS

\

\ Scores were downloaded and converted to a single bigWig file. See the\ hg19 makeDoc and the\ hg38 makeDoc for more info.\

\ \

HMC

\

\ Scores were downloaded and converted to .bedGraph files with a custom Python \ script. The bedGraph files were then converted to bigWig files, as documented in our \ makeDoc hg19 build log.

\ \

MetaDome

\

\ The authors provided a bed file containing codon coordinates along with the scores. \ This file was parsed with a python script to create the two tracks. For the first track\ the scores were aggregated for each coordinate, then the lowest score chosen for any\ overlaps and the result written out to bedGraph format. The file was then converted\ to bigWig with the bedGraphToBigWig utility. For the second track the file\ was reorganized into a bed 4+3 and conveted to bigBed with the bedToBigBed\ utility.

\

\ See the hg19 makeDoc for details including the build script.

\

\ The raw MetaDome data can also be accessed via their Zenodo handle.

\ \

MTR

\

\ V2\ file was downloaded and columns were reshuffled as well as itemRgb added for the\ MTR All data track. For the MTR Scores track the file was parsed with a python\ script to pull out the highest possible MTR score for each of the 3 possible mutations\ at each base pair and 4 tracks built out of these values representing each mutation.

\

\ See the hg19 makeDoc entry on MTR for more info.

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

\ \

\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

\ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/hmc/hmc.bw stdout\
\

\ \

\ Please refer to our\ Data Access FAQ\ for more information.\

\ \ \

Credits

\ \

\ Thanks to Jean-Madeleine Desainteagathe (APHP Paris, France) for suggesting the JARVIS, MTR, HMC tracks. Thanks to Xialei Zhang for providing the HMC data file and to Dimitrios Vitsios and Slave Petrovski for helping clean up the hg38 JARVIS files for providing guidance on interpretation. Additional\ thanks to Laurens van de Wiel for providing the MetaDome data as well as guidance on the track development and interpretation. \

\ \

References

\ \

\ Vitsios D, Dhindsa RS, Middleton L, Gussow AB, Petrovski S.\ \ Prioritizing non-coding regions based on human genomic constraint and sequence context with deep\ learning.\ Nat Commun. 2021 Mar 8;12(1):1504.\ PMID: 33686085; PMC: PMC7940646\

\ \

\ Xiaolei Zhang, Pantazis I. Theotokis, Nicholas Li, the SHaRe Investigators, Caroline F. Wright, Kaitlin E. Samocha, Nicola Whiffin, James S. Ware\ \ Genetic constraint at single amino acid resolution improves missense variant prioritisation and gene discovery.\ Medrxiv 2022.02.16.22271023\

\ \

\ Wiel L, Baakman C, Gilissen D, Veltman JA, Vriend G, Gilissen C.\ \ MetaDome: Pathogenicity analysis of genetic variants through aggregation of homologous human protein\ domains.\ Hum Mutat. 2019 Aug;40(8):1030-1038.\ PMID: 31116477; PMC: PMC6772141\

\ \

\ Silk M, Petrovski S, Ascher DB.\ \ MTR-Viewer: identifying regions within genes under purifying selection.\ Nucleic Acids Res. 2019 Jul 2;47(W1):W121-W126.\ PMID: 31170280; PMC: PMC6602522\

\ \

\ Halldorsson BV, Eggertsson HP, Moore KHS, Hauswedell H, Eiriksson O, Ulfarsson MO, Palsson G,\ Hardarson MT, Oddsson A, Jensson BO et al.\ \ The sequences of 150,119 genomes in the UK Biobank.\ Nature. 2022 Jul;607(7920):732-740.\ PMID: 35859178; PMC: PMC9329122\

\ \ phenDis 0 bigDataUrl /gbdb/hg19/metaDome/metaDome.bw\ color 0,105,145\ html constraintSuper\ longLabel MetaDome - Tolerance Landscape score\ maxHeightPixels 128:40:8\ maxWindowToDraw 10000000\ mouseOverFunction noAverage\ parent constraintSuper\ priority 2.5\ shortLabel MetaDome\ track metaDome\ type bigWig\ viewLimits 0:1\ viewLimitsMax 0:9\ visibility full\ yLineMark 0.7\ yLineOnOff on\ wgEncodeAwgDnaseMasterSites Master DNaseI HS bed 5 + DNaseI Hypersensitive Site Master List (125 cell types) from ENCODE/Analysis 1 2.6 0 0 0 127 127 127 1 0 0

Description

\

\ DNaseI hypersensitive sites (DHSs) are markers of regulatory DNA and have underpinned the\ discovery of all classes of cis-regulatory elements including enhancers, promoters, insulators, \ silencers and locus control regions. \ This track displays an extensive map of human DHSs (~2.9 million) identified through \ genome-wide profiling in \ 125 diverse cell and tissue types \ by the ENCODE Consortium between September 2007 and January 2011, with follow-on analysis \ and results reported in September 2012.

\

\ This master list track represents a summary of the 125 separate cell type DHSs.\ Each master list element consists of a DHS from at least one of the 125 cell types, \ and every DHS from a given cell type overlaps at least one master list DHS.\ For further details see the final paragraph of the Methods section below.

\

\ The data underlying this track was produced by two ENCODE production groups\ (University of Washington and Duke University).\ Uniform processing of the individual experiments was performed by the ENCODE Analysis Working \ Group, and is displayed in the \ ENCODE Uniform DNaseI HS\ browser track. \ The DNaseI HS Clusters\ track provides another view of this data.

\ \

Display Conventions and Configuration

\

\ The display for this track shows DHS locations and score as grayscale-colored items where\ higher scores correspond to darker-colored blocks. The label displayed to the left of \ each item indicates the number of cell types with DnaseI sensitivity detected at the site. \ Clicking on a displayed block shows a details page that lists the cell types.

\ \

Methods

\

\ DNaseI hypersensitivity mapping was performed using protocols developed by Duke University \ or University of Washington.\ Data sets were sequenced on Illumina instruments to an average depth of 30 million \ uniquely mapping sequence tags (27bp for University of Washington and 20bp for Duke University) \ per replicate. \ For uniformity of analysis, some cell-type data sets that exceeded 40M tag depth were \ randomly subsampled to a depth of 30 million tags. \ Sequence reads were mapped using the Bowtie aligner, allowing a maximum of two mismatches. \ Only reads mapping uniquely to the genome were used in the analyses. \ Mappings were to male or female versions of hg19/GRCh37, depending on cell type, \ with random regions omitted. \ Data were analysed jointly using a single algorithm to identify sites.

\

\ The hotspot algorithm (John et. al 2011) was applied uniformly to datasets from\ both protocols.\ Briefly, hotspot is a scan statistic that uses the binomial distribution to \ gauge enrichment of tags based on a local background model estimated around every tag. \ General-sized regions of enrichment are identified as hotspots, and then 150-bp peaks \ within hotspots are called by looking for local maxima in the tag density \ profile (sliding window tag count in 150-bp windows, stepping every 20 bp). \ Further stringencies are applied to the local maxima detection to prevent over calling \ of spurious peaks. \ The hotspot program also includes an FDR (false discovery rate) estimation procedure for thresholding \ hotspots and peaks, based on a simulation approach. \ Random reads are generated at the same sequencing depth as the target sample, hotspots\ are called on the simulated data, and the random and observed hotspots are compared \ via their z-scores (based on the binomial model) to estimate the FDR. \ Using this procedure, DHSs were identified at an FDR of 1%.

\

\ The DHSs called on individual cell-types were consolidated into a master list of 2,890,742 unique, \ non-overlapping DHS positions by first merging the FDR 1% peaks across all cell-types. \ Then, for each resulting interval of merged sites, the DHS with the highest z-score was \ selected for the master list. \ Any DHSs overlapping the peaks selected for the master list were then discarded. \ The remaining DHSs were then merged and the process repeated until each original DHS \ was either in the master list, or discarded. \ Of these DHSs, 970,100 were specific to a single cell type, 1,920,642 were active in 2 \ or more cell types, and 3,692 (a small minority) were detected in all cell types.\ Each master list DHS is annotated with the number of cell-types whose original DHSs \ overlap the master list DHS.

\ \

Credits

\

\ The master list was generated by the University of Washington ENCODE group on behalf of the ENCODE Analysis Working Group, based on uniformly processed DNaseI peaks (ENCODE Uniform DNaseI HS). Credits for the primary data underlying this track and the uniform peak calls are included in track description pages listed in the Description section of the Uniform DNaseI HS track.

\

\ Contact: Robert Thurman (University of Washington)

\ \

References

\ \

\ Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang\ H, Vernot B et al.\ \ The accessible chromatin landscape of the human genome.\ Nature. 2012 Sep 6;489(7414):75-82.\ PMID: 22955617; PMC: PMC3721348\

\ \

\ John S, Sabo PJ, Thurman RE, Sung MH, Biddie SC, Johnson TA, Hager GL, Stamatoyannopoulos JA.\ \ Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.\ Nat Genet. 2011 Mar;43(3):264-8.\ PMID: 21258342\

\ \ See also the references and credit sections in the related\ ENCODE Uniform DnaseI HS,\ ENCODE UW DnaseI HS\ and\ ENCODE Duke DnaseI HS\ tracks.\ \ regulation 1 bedNameLabel Number of cell types\ group regulation\ longLabel DNaseI Hypersensitive Site Master List (125 cell types) from ENCODE/Analysis\ minGrayLevel 3\ priority 2.6\ scoreMax 1000\ scoreMin 100\ shortLabel Master DNaseI HS\ sourceCountFilter 1:125\ sourceCountFilterByRange on\ sourceCountFilterLimits 1:125\ sourceTable wgEncodeAwgDnaseMasterSources\ spectrum on\ superTrack wgEncodeDNAseSuper dense\ track wgEncodeAwgDnaseMasterSites\ type bed 5 +\ urls sourceIds="http://genome.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&deprecated=true&term=$$"\ visibility dense\ metaDomeAllScores MetaDome All Data bigBed 4 + 3 MetaDome - Tolerance Landscape score all annotations 0 2.6 0 0 0 127 127 127 0 0 0

Description

\ \

\ The "Constraint scores" container track includes several subtracks showing the results of\ constraint prediction algorithms. These try to find regions of negative\ selection, where variations likely have functional impact. The algorithms do\ not use multi-species alignments to derive evolutionary constraint, but use\ primarily human variation, usually from variants collected by gnomAD (see the\ gnomAD V2 or V3 tracks on hg19 and hg38) or TOPMED (contained in our dbSNP\ tracks and available as a filter). One of the subtracks is based on UK Biobank\ variants, which are not available publicly, so we have no track with the raw data.\ The number of human genomes that are used as the input for these scores are\ 76k, 53k and 110k for gnomAD, TOPMED and UK Biobank, respectively.\

\ \

Note that another important constraint score, gnomAD\ constraint, is not part of this container track but can be found in the hg38 gnomAD\ track.\

\ \ The algorithms included in this track are:\
    \
  1. \ JARVIS - "Junk" Annotation genome-wide Residual Variation Intolerance Score: \ JARVIS scores were created by first scanning the entire genome with a\ sliding-window approach (using a 1-nucleotide step), recording the number of\ all TOPMED variants and common variants, irrespective of their predicted effect,\ within each window, to eventually calculate a single-nucleotide resolution\ genome-wide residual variation intolerance score (gwRVIS). That score, gwRVIS\ was then combined with primary genomic sequence context, and additional genomic\ annotations with a multi-module deep learning framework to infer\ pathogenicity of noncoding regions that still remains naive to existing\ phylogenetic conservation metrics. The higher the score, the more deleterious\ the prediction. This score covers the entire genome, except the gaps.\ \
  2. \ HMC - Homologous Missense Constraint:\ Homologous Missense Constraint (HMC) is a amino acid level measure\ of genetic intolerance of missense variants within human populations.\ For all assessable amino-acid positions in Pfam domains, the number of\ missense substitutions directly observed in gnomAD (Observed) was counted\ and compared to the expected value under a neutral evolution\ model (Expected). The upper limit of a 95% confidence interval for the\ Observed/Expected ratio is defined as the HMC score. Missense variants\ disrupting the amino-acid positions with HMC<0.8 are predicted to be\ likely deleterious. This score only covers PFAM domains within coding regions.\ \
  3. \ MetaDome - Tolerance Landscape Score (hg19 only):\ MetaDome Tolerance Landscape scores are computed as a missense over synonymous \ variant count ratio, which is calculated in a sliding window (with a size of 21 \ codons/residues) to provide \ a per-position indication of regional tolerance to missense variation. The \ variant database was gnomAD and the score corrected for codon composition. Scores \ <0.7 are considered intolerant. This score covers only coding regions.\ \
  4. \ MTR - Missense Tolerance Ratio (hg19 only):\ Missense Tolerance Ratio (MTR) scores aim to quantify the amount of purifying \ selection acting specifically on missense variants in a given window of \ protein-coding sequence. It is estimated across sliding windows of 31 codons \ (default) and uses observed standing variation data from the WES component of \ gnomAD / the Exome Aggregation Consortium Database (ExAC), version 2.0. Scores\ were computed using Ensembl v95 release. The number of gnomAD 2 exomes used here\ is higher than the number of gnomAD 3 samples (125 exoms versus 76k full genomes), \ but this score only covers coding regions.\ \
  5. \ UK Biobank depletion rank score (hg38 only):\ Halldorsson et al. tabulated the number of UK Biobank variants in each\ 500bp window of the genome and compared this number to an expected number\ given the heptamer nucleotide composition of the window and the fraction of\ heptamers with a sequence variant across the genome and their mutational\ classes. A variant depletion score was computed for every overlapping set\ of 500-bp windows in the genome with a 50-bp step size. They then assigned\ a rank (depletion rank (DR)) from 0 (most depletion) to 100 (least\ depletion) for each 500-bp window. Since the windows are overlapping, we\ plot the value only in the central 50bp of the 500bp window, following\ advice from the author of the score,\ Hakon Jonsson, deCODE Genetics. He suggested that the value of the central\ window, rather than the worst possible score of all overlapping windows, is\ the most informative for a position. This score covers almost the entire genome,\ only very few regions were excluded, where the genome sequence had too many gap characters.
\ \

Display Conventions and Configuration

\ \

JARVIS

\

\ JARVIS scores are shown as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The scores were downloaded and converted to a single bigWig file.\ Move the mouse over the bars to display the exact values. A horizontal line is shown at the 0.733\ value which signifies the 90th percentile.

\ See hg19 makeDoc and\ hg38 makeDoc.

\

\ Interpretation: The authors offer a suggested guideline of > 0.9998 for identifying\ higher confidence calls and minimizing false positives. In addition to that strict threshold, the \ following two more relaxed cutoffs can be used to explore additional hits. Note that these\ thresholds are offered as guidelines and are not necessarily representative of pathogenicity.

\ \

\ \ \ \ \ \ \ \ \ \
PercentileJARVIS score threshold
99th0.9998
95th0.9826
90th0.7338
\

\ \

HMC

\

\ HMC scores are displayed as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The highly-constrained cutoff\ of 0.8 is indicated with a line.

\

\ Interpretation: \ A protein residue with HMC score <1 indicates that missense variants affecting\ the homologous residues are significantly under negative selection (P-value <\ 0.05) and likely to be deleterious. A more stringent score threshold of HMC<0.8\ is recommended to prioritize predicted disease-associated variants.\

\ \

MetaDome

\

\ MetaDome data can be found on two tracks, MetaDome and MetaDome All Data.\ The MetaDome track should be used by default for data exploration. In this track\ the raw data containing the MetaDome tolerance scores were converted into a signal ("wiggle")\ track. Since this data was computed on the proteome, there was a small amount of coordinate\ overlap, roughly 0.42%. In these regions the lowest possible score was chosen for display\ in the track to maintain sensitivity. For this reason, if a protein variant is being evaluated,\ the MetaDome All Data track can be used to validate the score. More information\ on this data can be found in the MetaDome FAQ.

\

\ Interpretation: The authors suggest the following guidelines for evaluating\ intolerance. By default, the MetaDome track displays a horizontal line at 0.7 which \ signifies the first intolerant bin. For more information see the MetaDome publication.

\ \

\ \ \ \ \ \ \ \ \ \
ClassificationMetaDome Tolerance Score
Highly intolerant≤ 0.175
Intolerant≤ 0.525
Slightly intolerant≤ 0.7
\

\ \

MTR

\

\ MTR data can be found on two tracks, MTR All data and MTR Scores. In the\ MTR Scores track the data has been converted into 4 separate signal tracks\ representing each base pair mutation, with the lowest possible score shown when\ multiple transcripts overlap at a position. Overlaps can happen since this score\ is derived from transcripts and multiple transcripts can overlap. \ A horizontal line is drawn on the 0.8 score line\ to roughly represent the 25th percentile, meaning the items below may be of particular\ interest. It is recommended that the data be explored using\ this version of the track, as it condenses the information substantially while\ retaining the magnitude of the data.

\ \

Any specific point mutations of interest can then be researched in the \ MTR All data track. This track contains all of the information from\ \ MTRV2 including more than 3 possible scores per base when transcripts overlap.\ A mouse-over on this track shows the ref and alt allele, as well as the MTR score\ and the MTR score percentile. Filters are available for MTR score, False Discovery Rate\ (FDR), MTR percentile, and variant consequence. By default, only items in the bottom\ 25 percentile are shown. Items in the track are colored according\ to their MTR percentile:

\
    \
  • Green items MTR percentiles over 75\
  • Black items MTR percentiles between 25 and 75\
  • Red items MTR percentiles below 25\
  • Blue items No MTR score\
\

\ Interpretation: Regions with low MTR scores were seen to be enriched with\ pathogenic variants. For example, ClinVar pathogenic variants were seen to\ have an average score of 0.77 whereas ClinVar benign variants had an average score\ of 0.92. Further validation using the FATHMM cancer-associated training dataset saw\ that scores less than 0.5 contained 8.6% of the pathogenic variants while only containing\ 0.9% of neutral variants. In summary, lower scores are more likely to represent\ pathogenic variants whereas higher scores could be pathogenic, but have a higher chance\ to be a false positive. For more information see the MTR-Viewer publication.

\ \

Methods

\ \

JARVIS

\

\ Scores were downloaded and converted to a single bigWig file. See the\ hg19 makeDoc and the\ hg38 makeDoc for more info.\

\ \

HMC

\

\ Scores were downloaded and converted to .bedGraph files with a custom Python \ script. The bedGraph files were then converted to bigWig files, as documented in our \ makeDoc hg19 build log.

\ \

MetaDome

\

\ The authors provided a bed file containing codon coordinates along with the scores. \ This file was parsed with a python script to create the two tracks. For the first track\ the scores were aggregated for each coordinate, then the lowest score chosen for any\ overlaps and the result written out to bedGraph format. The file was then converted\ to bigWig with the bedGraphToBigWig utility. For the second track the file\ was reorganized into a bed 4+3 and conveted to bigBed with the bedToBigBed\ utility.

\

\ See the hg19 makeDoc for details including the build script.

\

\ The raw MetaDome data can also be accessed via their Zenodo handle.

\ \

MTR

\

\ V2\ file was downloaded and columns were reshuffled as well as itemRgb added for the\ MTR All data track. For the MTR Scores track the file was parsed with a python\ script to pull out the highest possible MTR score for each of the 3 possible mutations\ at each base pair and 4 tracks built out of these values representing each mutation.

\

\ See the hg19 makeDoc entry on MTR for more info.

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

\ \

\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

\ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/hmc/hmc.bw stdout\
\

\ \

\ Please refer to our\ Data Access FAQ\ for more information.\

\ \ \

Credits

\ \

\ Thanks to Jean-Madeleine Desainteagathe (APHP Paris, France) for suggesting the JARVIS, MTR, HMC tracks. Thanks to Xialei Zhang for providing the HMC data file and to Dimitrios Vitsios and Slave Petrovski for helping clean up the hg38 JARVIS files for providing guidance on interpretation. Additional\ thanks to Laurens van de Wiel for providing the MetaDome data as well as guidance on the track development and interpretation. \

\ \

References

\ \

\ Vitsios D, Dhindsa RS, Middleton L, Gussow AB, Petrovski S.\ \ Prioritizing non-coding regions based on human genomic constraint and sequence context with deep\ learning.\ Nat Commun. 2021 Mar 8;12(1):1504.\ PMID: 33686085; PMC: PMC7940646\

\ \

\ Xiaolei Zhang, Pantazis I. Theotokis, Nicholas Li, the SHaRe Investigators, Caroline F. Wright, Kaitlin E. Samocha, Nicola Whiffin, James S. Ware\ \ Genetic constraint at single amino acid resolution improves missense variant prioritisation and gene discovery.\ Medrxiv 2022.02.16.22271023\

\ \

\ Wiel L, Baakman C, Gilissen D, Veltman JA, Vriend G, Gilissen C.\ \ MetaDome: Pathogenicity analysis of genetic variants through aggregation of homologous human protein\ domains.\ Hum Mutat. 2019 Aug;40(8):1030-1038.\ PMID: 31116477; PMC: PMC6772141\

\ \

\ Silk M, Petrovski S, Ascher DB.\ \ MTR-Viewer: identifying regions within genes under purifying selection.\ Nucleic Acids Res. 2019 Jul 2;47(W1):W121-W126.\ PMID: 31170280; PMC: PMC6602522\

\ \

\ Halldorsson BV, Eggertsson HP, Moore KHS, Hauswedell H, Eiriksson O, Ulfarsson MO, Palsson G,\ Hardarson MT, Oddsson A, Jensson BO et al.\ \ The sequences of 150,119 genomes in the UK Biobank.\ Nature. 2022 Jul;607(7920):732-740.\ PMID: 35859178; PMC: PMC9329122\

\ \ phenDis 1 bigDataUrl /gbdb/hg19/metaDome/metaDome.bb\ html constraintSuper\ longLabel MetaDome - Tolerance Landscape score all annotations\ parent constraintSuper\ priority 2.6\ shortLabel MetaDome All Data\ track metaDomeAllScores\ type bigBed 4 + 3\ visibility hide\ wgEncodeAwgDnaseUniform Uniform DNaseI HS narrowPeak DNaseI Hypersensitivity Uniform Peaks from ENCODE/Analysis 1 2.6 0 0 0 127 127 127 1 0 0

Description

\

\ The ENCODE Analysis Working Group (AWG) has performed uniform processing on datasets produced by\ multiple data production groups in the ENCODE Consortium. This track represents a uniform set of\ open chromatin elements (DNaseI hypersensitive sites) in 125\ ENCODE cell types,\ based on DNase-seq data produced by the "Open Chromatin" (Duke/UNC/UT-A) and University of\ Washington (UW) ENCODE groups from the project inception in 2007 through the ENCODE January\ 2011 data freeze. The AWG uniform datasets are used in downstream analysis pipelines by members of\ the ENCODE Consortium and are one of the primary sources of data referenced in the 2012 ENCODE\ integrative analysis paper (ENCODE Project Consortium 2012). More information about the ENCODE\ integrative analysis is here.

\

\ The primary and lab-processed data (along with methods descriptions, credits and references) on\ which this track is based are available in the following ENCODE tracks:\

\

\ \

Display Conventions and Configuration

\

\ The display for this track shows site location and signal value as grayscale-colored items where\ higher signal values correspond to darker-colored blocks. The display can be filtered to higher\ valued items, using the 'Minimum signal' configuration item.

\

\ This track is a composite annotation track containing multiple subtracks, one for each cell type.\ The display mode and filtering of each subtrack can be individually controlled. \ For more information about track configuration, see\ Configuring Multi-View Tracks.

\

\ Metadata for a particular subtrack can be found by clicking the down arrow in\ the list of subtracks. The UCSC Accession listed in the metadata can be used with the File Search tool to\ retrieve primary data files underlying datasets of interest. \

\

\ In the subtrack selection list, the ENCODE tier (priority) is listed for each cell type. \ Tier 1 and Tier 2 represent categories with cell types designated for intensive study by \ the ENCODE investigators.\ After the January 2011 data freeze, an additional set of cell types were promoted from \ Tier 3 to Tier 2 to broaden the list of intensively studied cell types.\ These cell types are listed as Tier 2* in the subtrack list here (and are \ described as 'newly promoted to tier 2: not in 2011 analysis' on the\ ENCODE Common Cell Types page).

\ \

Methods

\

\ The DNase-seq aligned sequence reads (BAM files) from the primary data tracks listed above were\ processed using the UW HotSpot pipeline (as described in the UW DnaseI HS track description above).\ First, "hotspots" (i.e. broad, variable-sized regions of generalized chromatin accessibility) were\ identified using a relaxed threshold. Then more stringent "narrowPeaks" (False Discovery Rate 1% peaks)\ were generated by first thresholding hotspots (using random simulation) at FDR 1%, and then (essentially)\ locating local maxima of the tag density (150 bp window, sliding every 20 bp) within the hotspots.\ FDR 1% peaks were set to a fixed width of 150 bp.

\

\ The Duke DNase primary data were pre-processed to reduce variability by combining all replicates for\ a given cell-type and subsampling at a level of 30 million tags. For the UW data, the replicate 1\ calls from the primary UW DNaseI HS data track were used. For the 14 cell types where both groups\ have data, a collapsed set of FDR 1% peaks were generated by taking a non-overlapping selection of\ the calls from both centers and giving preference to the peak with the higher z-score when calls\ overlapped. A collapsed set of hotspots on these cell types was generated by merging the calls from\ both centers (taking the union interval of overlapping intervals).\

\ \

Credits

\

\ The processed data for this track were generated by the University of Washington ENCODE group on\ behalf of the ENCODE Analysis Working Group. Credits for the primary data underlying this track are\ included in track description pages listed in the Description section above. \

\

\ Contact: \ \ Robert Thurman (University of Washington)\ \

\ \

References

\

\ ENCODE Project Consortium, Dunham I, Kundaje A, Aldred SF, Collins PJ, Davis CA, Doyle F, Epstein\ CB, Frietze S, Harrow J et al.\ \ An integrated encyclopedia of DNA elements in the human genome.\ Nature. 2012 Sep 6;489(7414):57-74.\

\

\ Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang\ H, Vernot B et al.\ \ The accessible chromatin landscape of the human genome.\ Nature. 2012 Sep 6;489(7414):75-82.\

\

\ See also the references in the related\ ENCODE Duke DNaseI HS\ and\ ENCODE UW DnaseI HS\ tracks.\

\ \

Data Release Policy

\

While primary ENCODE data is subject to a restriction period as described in the \ \ ENCODE data release policy, \ this restriction does not apply to the integrative analysis results. \ The data in this track are freely available.\

\ regulation 1 allButtonPair on\ canPack on\ compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell\ dataVersion ENCODE Jan 2011 Freeze (Sept 2012 Analysis Pubs)\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line dccAccession=UCSC_Accession fileSize=Size\ group regulation\ longLabel DNaseI Hypersensitivity Uniform Peaks from ENCODE/Analysis\ priority 2.6\ scoreMax 150\ scoreMin 50\ shortLabel Uniform DNaseI HS\ signalFilter 0.0:20000.0\ signalFilterLimits 0.0:20000.0\ sortOrder tier=+ cellType=+\ spectrum on\ subGroup1 tier Tier a10=1 a20=2 a25=2* a30=3\ subGroup2 cellType Cell_Line a10GM12878=GM12878 a10H1-hESC=H1-hESC a10K562=K562 a20HeLa-S3=HeLa-S3 a20HepG2=HepG2 a20HUVEC=HUVEC a25MCF-7=MCF-7 a25Monocytes-CD14=Monocytes_CD14+ a25A549=A549 a25CD20=B_cells_CD20+ HeLa-S3-IFNa=HeLa-S3(IFNa) a8988T=8988T AG04449=AG04449 AG04450=AG04450 AG09309=AG09309 AG09319=AG09319 AG10803=AG10803 AoAF=AoAF AoSMC=AoSMC BE2_C=BE2_C BJ=BJ Caco-2=Caco-2 CD34_Mobilized=CD34+_Mobilized Chorion=Chorion CLL=CLL CMK=CMK Fibrobl=Fibrobl FibroP=FibroP Gliobla=Gliobla GM06990=GM06990 GM12864=GM12864 GM12865=GM12865 GM12891=GM12891 GM12892=GM12892 GM18507=GM18507 GM19238=GM19238 GM19239=GM19239 GM19240=GM19240 H7-hESC=H7-hESC H9ES=H9ES HAc=HAc HAEpiC=HAEpiC HA-h=HA-h HA-sp=HA-sp HBMEC=HBMEC HCF=HCF HCFaa=HCFaa HCM=HCM HConF=HConF HCPEpiC=HCPEpiC HCT-116=HCT-116 HEEpiC=HEEpiC Hepatocytes=Hepatocytes HFF=HFF HFF-Myc=HFF-Myc HGF=HGF HIPEpiC=HIPEpiC HL-60=HL-60 HMEC=HMEC HMF=HMF HMVEC-dAd=HMVEC-dAd HMVEC-dBl-Ad=HMVEC-dBl-Ad HMVEC-dBl-Neo=HMVEC-dBl-Neo HMVEC-dLy-Ad=HMVEC-dLy-Ad HMVEC-dLy-Neo=HMVEC-dLy-Neo HMVEC-dNeo=HMVEC-dNeo HMVEC-LBl=HMVEC-LBl HMVEC-LLy=HMVEC-LLy HNPCEpiC=HNPCEpiC HPAEC=HPAEC HPAF=HPAF HPDE6-E6E7=HPDE6-E6E7 HPdLF=HPdLF HPF=HPF HRCEpiC=HRCEpiC HRE=HRE HRGEC=HRGEC HRPEpiC=HRPEpiC HSMM=HSMM HSMM_emb=HSMM_emb HSMMtube=HSMMtube HTR8svn=HTR8svn Huh-7=Huh-7 Huh-75=Huh-7.5 HVMF=HVMF IPS=iPS Ishikawa=Ishikawa Ishikawa-Estr=Ishikawa(Estr) Ishikawa-Tamox=Ishikawa(Tamox) Jurkat=Jurkat LNCaP=LNCaP LNCaP-Andr=LNCaP(Andr) MCF-7-Hypox=MCF-7(Hypox) Medullo=Medullo Melano=Melano Myometr=Myometr NB4=NB4 NH-A=NH-A NHDF-Ad=NHDF-Ad NHDF-neo=NHDF-neo NHEK=NHEK NHLF=NHLF NT2-D1=NT2-D1 Osteobl=Osteobl PANC-1=PANC-1 PanIsletD=PanIsletD PanIslets=PanIslets PHTE=pHTE PrEC=PrEC ProgFib=ProgFib RPTEC=RPTEC RWPE1=RWPE1 SAEC=SAEC SKMC=SKMC SK-N-MC=SK-N-MC SK-N-SH_RA=SK-N-SH_RA Stellate=Stellate T-47D=T-47D Th0=Th0 Th1=Th1 Th2=Th2 Urothelia=Urothelia Urothelia-UT189=Urothelia(UT189) WERI-Rb-1=WERI-Rb-1 WI-38=WI-38 WI-38-Tamox=WI-38(Tamox)\ superTrack wgEncodeDNAseSuper dense\ track wgEncodeAwgDnaseUniform\ type narrowPeak\ visibility dense\ encTfChipPk ENCODE 3 TFBS narrowPeak Transcription Factor ChIP-seq Peaks (338 factors in 130 cell types) from ENCODE 3 1 2.7 0 0 0 127 127 127 0 0 0

Description

\

\ This track represents a comprehensive set of human transcription factor binding sites based on \ ChIP-seq experiments generated by production groups in the ENCODE Consortium between \ February 2011 and November 2018.

\

\ Transcription factors (TFs) are proteins that bind to DNA and interact with RNA polymerases to\ regulate gene expression. Some TFs contain a DNA binding domain and can bind directly to \ specific short DNA sequences ('motifs');\ others bind to DNA indirectly through interactions with TFs containing a DNA binding domain.\ High-throughput antibody capture and sequencing methods (e.g. chromatin immunoprecipitation\ followed by sequencing, or 'ChIP-seq') can be used to identify regions of\ TF binding genome-wide. These regions are commonly called ChIP-seq peaks.

\ \ The related\ Transcription Factor ChIP-seq Clusters tracks \ (hg19,\ hg38)\ provide summary views of this data.\

\

\ \

Display and File Conventions and Configuration

\

\ The display for this track shows site location with the point-source of the peak marked with a \ colored vertical bar and the level of enrichment at the site indicated by the darkness of the item.\ The subtracks are colored by UCSC ENCODE 2 cell type color conventions on the hg19 assembly, \ and by similarity of cell types in DNaseI hypersensitivity assays (as in the\ DNase Signal)\ track in the hg38 assembly.

\ \ The display can be filtered to higher valued items, using the \ Score range: configuration item.\ The score values were computed at UCSC based on signal values assigned by the ENCODE\ pipeline.\ The input signal values were multiplied by a normalization factor calculated as the ratio\ of the maximum score value (1000) to the signal value at 1 standard deviation from the mean,\ with values exceeding 1000 capped at 1000. This has the effect of distributing scores up to \ mean + 1std across the score range, but assigning all above to the maximum score.\ \

Methods

\

\ The ChIP-seq peaks in this track were\ generated by the\ the ENCODE Transcription Factor ChIP-seq Processing Pipeline.\ Methods documentation and full metadata for each track can be found at the \ ENCODE project portal, using\ The ENCODE file accession (ENCFF*) listed in the track label.\

\ \

Credits

\

\ Thanks to the ENCODE Consortium, the ENCODE ChIP-seq production laboratories, and the\ ENCODE Data Coordination Center for generating and processing the datasets used here.\ Special thanks to Henry Pratt, Jill Moore, Michael Purcaro, and Zhiping Weng, PI, at the \ ENCODE Data Analysis Center\ (ZLab at UMass Medical Center) for providing the peak datasets, metadata,\ and guidance developing this track. Please check the\ ZLab ENCODE Public Hubs\ for the most updated data.\

\ \

References

\ \

ENCODE Project Consortium.\ \ A user's guide to the encyclopedia of DNA elements (ENCODE).\ PLoS Biol. 2011 Apr;9(4):e1001046. PMID: 21526222; PMCID: PMC3079585\

\ \

ENCODE Project Consortium.\ \ An integrated encyclopedia of DNA elements in the human genome.\ Nature. 2012 Sep 6;489(7414):57-74. PMID: 22955616; PMCID: PMC3439153\

\

\ Sloan CA, Chan ET, Davidson JM, Malladi VS, Strattan JS, Hitz BC, Gabdank I, Narayanan AK, Ho M, Lee\ BT et al.\ \ ENCODE data at the ENCODE portal.\ Nucleic Acids Res. 2016 Jan 4;44(D1):D726-32.\ PMID: 26527727; PMC: PMC4702836\

\

\ Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J,\ Alexander R et al.\ \ Architecture of the human regulatory network derived from ENCODE data.\ Nature. 2012 Sep 6;489(7414):91-100.\ PMID: 22955619\

\

\ Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y\ et al.\ \ Sequence features and chromatin structure around the genomic regions bound by 119 human\ transcription factors.\ Genome Res. 2012 Sep;22(9):1798-812.\ PMID: 22955990; PMC: PMC3431495\

\

\ Wang J, Zhuang J, Iyer S, Lin XY, Greven MC, Kim BH, Moore J, Pierce BG, Dong X, Virgil D et\ al.\ \ Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE\ consortium.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D171-6.\ PMID: 23203885; PMC: PMC3531197\

\ \

Data Use Policy

\

Users may freely download, analyze and publish results based on any ENCODE data without \ restrictions.\ Researchers using unpublished ENCODE data are encouraged to contact the data producers to discuss possible coordinated publications; however, this is optional.

\

\ Users of ENCODE datasets are requested to cite the ENCODE Consortium and ENCODE \ production laboratory(s) that generated the datasets used, as described in\ Citing ENCODE.

\ \ regulation 1 compositeTrack on\ dataVersion ENCODE 3 Nov 2018\ dimensions dimX=cellType dimY=factor\ dragAndDrop subTracks\ group regulation\ longLabel Transcription Factor ChIP-seq Peaks (338 factors in 130 cell types) from ENCODE 3\ parent wgEncodeTfBindingSuper\ priority 2.7\ scoreFilter 0\ scoreFilterLimits 0:1000\ shortLabel ENCODE 3 TFBS\ sortOrder cellType=+ factor=+\ subGroup1 cellType Cell_Type X22Rv1=22Rv1 A549=A549 A673=A673 AG04449=AG04449 AG04450=AG04450 AG09309=AG09309 AG09319=AG09319 AG10803=AG10803 BE2C=BE2C BJ=BJ B_cell=B_cell C4-2B=C4-2B CD14-positive_monocyte=CD14-positive_monocyte Caco-2=Caco-2 DOHH2=DOHH2 GM06990=GM06990 GM08714=GM08714 GM10266=GM10266 GM12864=GM12864 GM12865=GM12865 GM12873=GM12873 GM12874=GM12874 GM12875=GM12875 GM12878=GM12878 GM12891=GM12891 GM12892=GM12892 GM13977=GM13977 GM20000=GM20000 GM23248=GM23248 GM23338=GM23338 H1-hESC=H1-hESC H54=H54 HCT116=HCT116 HEK293=HEK293 HEK293T=HEK293T HFF-Myc=HFF-Myc HL-60=HL-60 HeLa-S3=HeLa-S3 HepG2=HepG2 IMR-90=IMR-90 Ishikawa=Ishikawa K562=K562 KMS-11=KMS-11 LNCAP=LNCAP LNCaP_clone_FGC=LNCaP_clone_FGC MCF-7=MCF-7 MCF_10A=MCF_10A MM_1S=MM.1S NB4=NB4 NCI-H929=NCI-H929 NT2_D1=NT2/D1 OCI-LY1=OCI-LY1 OCI-LY3=OCI-LY3 OCI-LY7=OCI-LY7 PC-3=PC-3 PC-9=PC-9 PFSK-1=PFSK-1 Panc1=Panc1 Parathyroid_adenoma=Parathyroid_adenoma Peyers_patch=Peyer's_patch RWPE1=RWPE1 RWPE2=RWPE2 Raji=Raji SH-SY5Y=SH-SY5Y SK-N-MC=SK-N-MC SK-N-SH=SK-N-SH SU-DHL-6=SU-DHL-6 T47D=T47D VCaP=VCaP WERI-Rb-1=WERI-Rb-1 WI38=WI38 adrenal_gland=adrenal_gland ascending_aorta=ascending_aorta astrocyte=astrocyte astrocyte_of_the_cerebellum=astrocyte_of_the_cerebellum astrocyte_of_the_spinal_cord=astrocyte_of_the_spinal_cord bipolar_neuron=bipolar_neuron body_of_pancreas=body_of_pancreas brain_microvascular_endothelial_cell=brain_microvascular_endothelial_cell breast_epithelium=breast_epithelium cardiac_fibroblast=cardiac_fibroblast cardiac_muscle_cell=cardiac_muscle_cell choroid_plexus_epithelial_cell=choroid_plexus_epithelial_cell endothelial_cell_of_umbilical_vein=endothelial_cell_of_umbilical_vein epithelial_cell_of_esophagus=epithelial_cell_of_esophagus epithelial_cell_of_prostate=epithelial_cell_of_prostate epithelial_cell_of_proximal_tubule=epithelial_cell_of_proximal_tubule erythroblast=erythroblast esophagus_muscularis_mucosa=esophagus_muscularis_mucosa esophagus_squamous_epithelium=esophagus_squamous_epithelium fibroblast_of_lung=fibroblast_of_lung fibroblast_of_mammary_gland=fibroblast_of_mammary_gland fibroblast_of_pulmonary_artery=fibroblast_of_pulmonary_artery fibroblast_of_the_aortic_adventitia=fibroblast_of_the_aortic_adventitia fibroblast_of_villous_mesenchyme=fibroblast_of_villous_mesenchyme foreskin_fibroblast=foreskin_fibroblast foreskin_keratinocyte=foreskin_keratinocyte gastrocnemius_medialis=gastrocnemius_medialis gastroesophageal_sphincter=gastroesophageal_sphincter heart_left_ventricle=heart_left_ventricle hepatocyte=hepatocyte keratinocyte=keratinocyte kidney_epithelial_cell=kidney_epithelial_cell liver=liver lower_leg_skin=lower_leg_skin mammary_epithelial_cell=mammary_epithelial_cell medulloblastoma=medulloblastoma myotube=myotube neural_cell=neural_cell neural_progenitor_cell=neural_progenitor_cell neutrophil=neutrophil omental_fat_pad=omental_fat_pad ovary=ovary prostate_gland=prostate_gland retinal_pigment_epithelial_cell=retinal_pigment_epithelial_cell right_lobe_of_liver=right_lobe_of_liver sigmoid_colon=sigmoid_colon smooth_muscle_cell=smooth_muscle_cell spleen=spleen stomach=stomach subcutaneous_adipose_tissue=subcutaneous_adipose_tissue suprapubic_skin=suprapubic_skin testis=testis thyroid_gland=thyroid_gland tibial_artery=tibial_artery tibial_nerve=tibial_nerve transverse_colon=transverse_colon upper_lobe_of_left_lung=upper_lobe_of_left_lung uterus=uterus vagina=vagina\ subGroup2 factor Factor AFF1=AFF1 AGO1=AGO1 AGO2=AGO2 ARHGAP35=ARHGAP35 ARID1B=ARID1B ARID2=ARID2 ARID3A=ARID3A ARNT=ARNT ASH1L=ASH1L ASH2L=ASH2L ATF2=ATF2 ATF3=ATF3 ATF4=ATF4 ATF7=ATF7 ATM=ATM BACH1=BACH1 BATF=BATF BCL11A=BCL11A BCL3=BCL3 BCOR=BCOR BHLHE40=BHLHE40 BMI1=BMI1 BRCA1=BRCA1 BRD4=BRD4 BRD9=BRD9 C11orf30=C11orf30 CBFA2T2=CBFA2T2 CBFA2T3=CBFA2T3 CBFB=CBFB CBX1=CBX1 CBX2=CBX2 CBX3=CBX3 CBX5=CBX5 CBX8=CBX8 CC2D1A=CC2D1A CCAR2=CCAR2 CDC5L=CDC5L CEBPB=CEBPB CHAMP1=CHAMP1 CHD1=CHD1 CHD4=CHD4 CHD7=CHD7 CLOCK=CLOCK COPS2=COPS2 CREB1=CREB1 CREB3L1=CREB3L1 CREBBP=CREBBP CREM=CREM CTBP1=CTBP1 CTCF=CTCF CUX1=CUX1 DACH1=DACH1 DEAF1=DEAF1 DNMT1=DNMT1 DPF2=DPF2 E2F1=E2F1 E2F4=E2F4 E2F6=E2F6 E2F7=E2F7 E2F8=E2F8 E4F1=E4F1 EBF1=EBF1 EED=EED EGR1=EGR1 EHMT2=EHMT2 ELF1=ELF1 ELF4=ELF4 ELK1=ELK1 EP300=EP300 EP400=EP400 ESR1=ESR1 ESRRA=ESRRA ETS1=ETS1 ETV4=ETV4 ETV6=ETV6 EWSR1=EWSR1 EZH2=EZH2 FIP1L1=FIP1L1 FOS=FOS FOSL1=FOSL1 FOSL2=FOSL2 FOXA1=FOXA1 FOXA2=FOXA2 FOXK2=FOXK2 FOXM1=FOXM1 FOXP1=FOXP1 FUS=FUS GABPA=GABPA GABPB1=GABPB1 GATA1=GATA1 GATA2=GATA2 GATA3=GATA3 GATA4=GATA4 GATAD2A=GATAD2A GATAD2B=GATAD2B GMEB1=GMEB1 HCFC1=HCFC1 HDAC1=HDAC1 HDAC2=HDAC2 HDAC3=HDAC3 HDAC6=HDAC6 HES1=HES1 HMBOX1=HMBOX1 HNF1A=HNF1A HNF4A=HNF4A HNF4G=HNF4G HNRNPH1=HNRNPH1 HNRNPK=HNRNPK HNRNPL=HNRNPL HNRNPLL=HNRNPLL HNRNPUL1=HNRNPUL1 HSF1=HSF1 IKZF1=IKZF1 IKZF2=IKZF2 IRF1=IRF1 IRF2=IRF2 IRF3=IRF3 IRF4=IRF4 IRF5=IRF5 JUN=JUN JUNB=JUNB JUND=JUND KAT2B=KAT2B KAT8=KAT8 KDM1A=KDM1A KDM4A=KDM4A KDM4B=KDM4B KDM5A=KDM5A KDM5B=KDM5B KLF16=KLF16 KLF5=KLF5 L3MBTL2=L3MBTL2 LCORL=LCORL LEF1=LEF1 MAFF=MAFF MAFK=MAFK MAX=MAX MBD2=MBD2 MCM2=MCM2 MCM3=MCM3 MCM5=MCM5 MCM7=MCM7 MEF2A=MEF2A MEF2B=MEF2B MEF2C=MEF2C MEIS2=MEIS2 MGA=MGA MIER1=MIER1 MITF=MITF MLLT1=MLLT1 MNT=MNT MTA1=MTA1 MTA2=MTA2 MTA3=MTA3 MXI1=MXI1 MYB=MYB MYBL2=MYBL2 MYC=MYC MYNN=MYNN NANOG=NANOG NBN=NBN NCOA1=NCOA1 NCOA2=NCOA2 NCOA3=NCOA3 NCOA4=NCOA4 NCOA6=NCOA6 NCOR1=NCOR1 NEUROD1=NEUROD1 NFATC1=NFATC1 NFATC3=NFATC3 NFE2=NFE2 NFE2L2=NFE2L2 NFIB=NFIB NFIC=NFIC NFRKB=NFRKB NFXL1=NFXL1 NFYA=NFYA NFYB=NFYB NR0B1=NR0B1 NR2C1=NR2C1 NR2C2=NR2C2 NR2F1=NR2F1 NR2F2=NR2F2 NR2F6=NR2F6 NR3C1=NR3C1 NRF1=NRF1 NUFIP1=NUFIP1 PAX5=PAX5 PAX8=PAX8 PBX3=PBX3 PCBP1=PCBP1 PCBP2=PCBP2 PHB2=PHB2 PHF20=PHF20 PHF21A=PHF21A PHF8=PHF8 PKNOX1=PKNOX1 PLRG1=PLRG1 PML=PML POLR2A=POLR2A POLR2G=POLR2G POU2F2=POU2F2 PRDM10=PRDM10 PRPF4=PRPF4 PTBP1=PTBP1 PYGO2=PYGO2 RAD21=RAD21 RAD51=RAD51 RB1=RB1 RBBP5=RBBP5 RBFOX2=RBFOX2 RBM14=RBM14 RBM15=RBM15 RBM17=RBM17 RBM22=RBM22 RBM25=RBM25 RBM34=RBM34 RBM39=RBM39 RCOR1=RCOR1 RELB=RELB REST=REST RFX1=RFX1 RFX5=RFX5 RLF=RLF RNF2=RNF2 RUNX1=RUNX1 RUNX3=RUNX3 RXRA=RXRA SAFB=SAFB SAFB2=SAFB2 SAP30=SAP30 SETDB1=SETDB1 SIN3A=SIN3A SIN3B=SIN3B SIRT6=SIRT6 SIX4=SIX4 SIX5=SIX5 SKI=SKI SKIL=SKIL SMAD1=SMAD1 SMAD2=SMAD2 SMAD5=SMAD5 SMARCA4=SMARCA4 SMARCA5=SMARCA5 SMARCB1=SMARCB1 SMARCC2=SMARCC2 SMARCE1=SMARCE1 SMC3=SMC3 SNRNP70=SNRNP70 SOX13=SOX13 SOX6=SOX6 SP1=SP1 SPI1=SPI1 SREBF1=SREBF1 SREBF2=SREBF2 SRF=SRF SRSF4=SRSF4 SRSF7=SRSF7 SRSF9=SRSF9 STAT1=STAT1 STAT2=STAT2 STAT3=STAT3 STAT5A=STAT5A SUPT20H=SUPT20H SUZ12=SUZ12 TAF1=TAF1 TAF15=TAF15 TAF7=TAF7 TAF9B=TAF9B TAL1=TAL1 TBL1XR1=TBL1XR1 TBP=TBP TBX21=TBX21 TBX3=TBX3 TCF12=TCF12 TCF7=TCF7 TCF7L2=TCF7L2 TEAD4=TEAD4 TFAP4=TFAP4 THAP1=THAP1 THRA=THRA TRIM22=TRIM22 TRIM24=TRIM24 TRIM28=TRIM28 TRIP13=TRIP13 U2AF1=U2AF1 U2AF2=U2AF2 UBTF=UBTF USF1=USF1 USF2=USF2 WHSC1=WHSC1 WRNIP1=WRNIP1 XRCC3=XRCC3 XRCC5=XRCC5 YY1=YY1 ZBED1=ZBED1 ZBTB1=ZBTB1 ZBTB11=ZBTB11 ZBTB2=ZBTB2 ZBTB33=ZBTB33 ZBTB40=ZBTB40 ZBTB5=ZBTB5 ZBTB7A=ZBTB7A ZBTB7B=ZBTB7B ZBTB8A=ZBTB8A ZEB1=ZEB1 ZEB2=ZEB2 ZFP91=ZFP91 ZFX=ZFX ZHX1=ZHX1 ZHX2=ZHX2 ZKSCAN1=ZKSCAN1 ZMIZ1=ZMIZ1 ZMYM3=ZMYM3 ZNF143=ZNF143 ZNF184=ZNF184 ZNF207=ZNF207 ZNF217=ZNF217 ZNF24=ZNF24 ZNF274=ZNF274 ZNF280A=ZNF280A ZNF282=ZNF282 ZNF316=ZNF316 ZNF318=ZNF318 ZNF384=ZNF384 ZNF407=ZNF407 ZNF444=ZNF444 ZNF507=ZNF507 ZNF512B=ZNF512B ZNF574=ZNF574 ZNF579=ZNF579 ZNF592=ZNF592 ZNF639=ZNF639 ZNF687=ZNF687 ZNF8=ZNF8 ZNF830=ZNF830 ZSCAN29=ZSCAN29 ZZZ3=ZZZ3\ track encTfChipPk\ type narrowPeak\ visibility dense\ wgEncodeAwgTfbsUniform Uniform TFBS narrowPeak Transcription Factor ChIP-seq Uniform Peaks from ENCODE/Analysis 1 2.7 0 0 0 127 127 127 0 0 0

Description

\

\ This track represents a comprehensive set of human transcription factor binding sites based on \ ChIP-seq experiments generated by production groups in the ENCODE Consortium from the inception \ of the project in September 2007, through the March 2012 internal data freeze. \ The track represents peak calls (regions of enrichment) that were generated by the ENCODE\ Analysis Working Group (AWG) based on a uniform processing pipeline developed for the ENCODE\ Integrative Analysis effort and published in a set of coordinated papers in September 2012. \ Peak calls from that effort, based on datasets from the January 2011 ENCODE data freeze) are \ available at the ENCODE Analysis Data Hub. \ This track is an update that includes newer data, and slightly modified methods for the \ peak calling.

\

\ This track contains 690 ChIP-seq datasets representing 161 unique regulatory factors (generic\ and sequence-specific factors). \ The datasets span 91 human cell types and some are in various treatment conditions. \ These datasets were generated by the five ENCODE TFBS ChIP-seq production groups: Broad, \ Stanford/Yale/UC-Davis/Harvard, HudsonAlpha Institute, University of Texas-Austin and University\ of Washington, and University of Chicago. The University of Chicago ChIP-seq were performed \ with an alternative epitope-tagged ChIP-seq methodology. The primary and lab-processed data \ (along with methods descriptions, credits and references) on which this track is based are\ available in the following ENCODE tracks: HAIB TFBS, SYDH TFBS, UChicago TFBS, UTA TFBS,\ UW CTCF Binding. These tracks are accessible from the ENC TF Binding Super-track. \

\ \

Display and File Conventions and Configuration

\

\ The display for this track shows site location with the point-source of the peak marked with a \ colored vertical bar and the level of enrichment at the site indicated by the darkness of the item.\ The display can be filtered to higher valued items, using the \ Score range: configuration item.\ The score values were computed at UCSC based on signal values assigned by the ENCODE\ uniform analysis pipeline.\ The input signal values were multiplied by a normalization factor calculated as the ratio\ of the maximum score value (1000) to the signal value at 1 standard deviation from the mean,\ with values exceeding 1000 capped at 1000. This has the effect of distributing scores up to \ mean + 1std across the score range, but assigning all above to the maximum score.\

\ This track is a composite annotation track containing multiple subtracks, one for each cell type.\ The display mode and filtering of each subtrack can be individually controlled.\ For more information about track configuration, see\ \ Configuring Multi-View Tracks.\ Metadata for a particular subtrack can be found by clicking the down arrow in\ the list of subtracks. The UCSC Accession listed in the metadata can be used with the\ File Search tool to\ retrieve primary data files underlying datasets of interest, by selecting \ UCSC Accession from the "ENCODE terms" drop down menu option.

\

\ In the subtrack selection list, the ENCODE tier (priority) is listed for each cell type.\ Tier 1 and Tier 2 represent categories with cell types designated for intensive study by\ the ENCODE investigators.\ After the January 2011 data freeze, an additional set of cell types were promoted from\ Tier 3 to Tier 2 to broaden the list of intensively studied cell types.\ These cell types are listed as Tier 2* in the subtrack list here (and are\ described as 'newly promoted to tier 2: not in 2011 analysis' on the\ ENCODE Common Cell Types page).

\

\ Download files \ for this track are in \ ENCODE NarrowPeak format.

\ \

Methods

\

\ All ChIP-seq experiments were performed at least in duplicate, and were scored against\ an appropriate control designated by the production groups (either input DNA or DNA obtained\ from a control immunoprecipitation).

\ \

Short Read Mapping

\

\ For each dataset, mapped reads in the form of BAM files were downloaded from the\ ENCODE UCSC DCC. \ These BAM files were generated by the ENCODE data production labs (using different mappers \ and mapping parameters), but all used a standardized version of the GRCh37 (hg19) reference \ human genome sequence with the following modifications:\

    \
  • Mitochondrial sequence was included.
    • \
  • Alternate sequences were excluded.
    • \
  • Random contigs were excluded.
    • \
  • The female version of the genome was represented by the autosomes and chrX, whereas the \ male genome was represented by the autosomes, chrX, and chrY with the PAR regions masked.
    • \
\

\ In order to standardize the mapping protocol, custom unique-mappability tracks were used to \ only retain unique mapping reads, i.e. reads that map to exactly one location in the genome. \ Positional and PCR duplicates were also filtered out.

\ \

Quality Control

\

A number of quality metrics for individual replicates listed on the\ ENCODE portal Quality Metrics page, including measures of library complexity\ and signal enrichment, were calculated and are available for\ review (Landt et al., 2012; Kundaje et al., 2013a). \ The Integrated Quality Flag from this quality assessment was used to assign the\ quality metadata term \ for each dataset (e.g., Good vs. Caution). \ Datasets that did not pass the minimum quality control thresholds are not included in this track.

\

\ \

Peak Calling

\

Since every ENCODE dataset is represented by at least two biological replicate experiments, \ a novel measure of consistency and reproducibility of peak calling results between replicates, \ known as the Irreproducible Discovery Rate (IDR), was used to determine an optimal number\ of reproducible peaks (Li et al., 2011; Kundaje et al., 2013b). Code and detailed step-by-step\ instructions to call peaks using the IDR method are\ available. \ In brief, the SPP peak caller (Kharchenko et al., 2008) was used with a relaxed peak calling\ threshold (FDR = 0.9) to obtain a large number of peaks (maximum of 300K) that span true signal \ as well as noise (false identifications). The IDR method analyzes a pair of replicates, and \ considers peaks that are present in both replicates to belong to one of two populations : a \ reproducible signal group or an irreproducible noise group. Peaks from the reproducible group \ are expected to show relatively higher ranks (ranked based on signal scores) and stronger \ rank-consistency across the replicates, relative to peaks in the irreproducible groups. \ Based on these assumptions, a two-component probabilistic copula-mixture model is used to fit\ the bivariate peak rank distributions from the pairs of replicates. The method adaptively learns\ the degree of peak-rank consistency in the signal component and the proportion of peaks belonging\ to each component. The model can then be used to infer an IDR score for every peak that is found\ in both replicates. The IDR score of a peak represents the expected probability that the peak\ belongs to the noise component, and is based on its ranks in the two replicates. \ Hence, low IDR scores represent high-confidence peaks. An IDR score threshold of 0.02 (2%) was\ used to obtain an optimal peak rank threshold on the replicate peak sets (cross-replicate \ threshold). \ If a dataset had more than two replicates, all pairs of replicates were analyzed using the IDR\ method. The maximum peak rank threshold across all pairwise analyses was used as the final\ cross-replicate peak rank threshold. Reads from replicate datasets were then pooled and SPP\ was once again used to call peaks on the pooled data with a relaxed FDR of 0.9. \ Pooled-data peaks were once again ranked by signal-score. The cross-replicate rank threshold\ learned from the replicates was used to threshold the ranked set of pooled-data peaks.

\

\ Any thresholds based on reproducibility of peak calling between biological replicates are bounded\ by the quality and enrichment of the worst replicate. Valuable signal is lost in cases for which\ a dataset has one replicate that is significantly worse in data quality than another replicate. \ A rescue pipeline was used for such cases in order to balance data quality between a set of\ replicates. Mapped reads were pooled across all replicates of a dataset, and then randomly \ sampled (without replacement) to generate two pseudo-replicates with equal numbers of reads.\ This sampling strategy tends to transfer signal from stronger replicates to the weaker \ replicates, thereby balancing cross-replicate data quality and sequencing depth. \ These pseudo-replicates were then processed using the IDR method in order to learn a rescue\ threshold. \ For datasets with comparable replicates (based on independent measures of data quality), the \ rescue threshold and cross-replicate thresholds were found to be very similar. \ However, for datasets with replicates of differing data quality, the rescue thresholds were\ often higher than the cross-replicate thresholds, and were able to capture true peaks that \ showed statistically significant and visually compelling ChIP-seq signal in one replicate \ but not in the other. \ Ultimately, for each dataset, the best of the cross-replicate and rescue thresholds were used\ to obtain a final consolidated optimal set of peaks.

\

\ All peak sets were then screened against a specially curated empirical blacklist\ of regions in the human genome (wgEncodeDacMapabilityConsensusExcludable.bed.gz)\ and peaks overlapping the blacklisted regions were discarded (Kundaje et al., 2013b). \ Briefly, these artifact regions typically show the following characteristics:\

    \ \
  • Unstructured and extreme artifactual high signal in sequenced input-DNA and control datasets,\ as well as open chromatin datasets irrespective of cell type identity.
    • \ \
  • An extreme ratio of multi-mapping to unique mapping reads from sequencing experiments.
    • \ \
  • Overlap with pathological repeat regions such as centromeric, telomeric and satellite \ repeats that often have few unique mappable locations interspersed in repeats.
    • \ \
\

\ \

Differences from the January 2011 freeze pipeline

\

\ The January 2011 uniform processing was performed as part of the\ \ ENCODE Integrative Analysis \ reported in coordinated publications in September 2012. \ The results from this effort are available from the ENCODE Analysis Hub at the EBI.\

    \
  • For the March 2012 freeze, only the SPP peak caller was used. \ SPP and PeakSeq were used for the January 2011 freeze.
    • \ \
  • For March 2012, In the read mapping phase, an extra step was performed to remove all \ positional duplicates. This was done to avoid low library complexity issues. \ In January 2011, remove positional duplicates were retained.
    • \ \
  • For March 2012, an IDR threshold of 2% was used for comparing and thresholding the true\ replicates and the pooled pseudo-replicates. \ In January 2011, the IDR threshold was set to 1% for the true replicates and 0.25% for the \ pooled pseudo-replicates. These thresholds were determined to be too stringent.
    • \ \
\

\ \

Credits

\

\ The processed data for this track were generated by Anshul Kundaje on\ behalf of the ENCODE Analysis Working Group. Credits for the primary data underlying this \ track are included in track description pages listed in the Description section above.\

\

\ Contact:\ \ Anshul Kundaje \ \

\ \

References

\

\

ENCODE Project Consortium.\ \ A user's guide to the encyclopedia of DNA elements (ENCODE).\ PLoS Biol. 2011 Apr;9(4):e1001046. PMID: 21526222; PMCID: PMC3079585\

\ \

ENCODE Project Consortium.\ \ An integrated encyclopedia of DNA elements in the human genome.\ Nature. 2012 Sep 6;489(7414):57-74. PMID: 22955616; PMCID: PMC3439153\

\ \

Kharchenko PV, Tolstorukov MY, Park PJ.\ \ Design and analysis of ChIP-seq experiments for DNA-binding proteins.\ Nat Biotechnol. 2008 Dec;26(12):1351-9. PMID: 19029915; PMCID: PMC2597701 \

\ \

Kundaje A, Jung L, Kharchenko PV, Sidow A, Batzoglou S, Park PJ.\ Assessment of ChIP-seq data quality using strand cross-correlation analysis. (submitted), 2012a.\

\ \

Kundaje A, Li Q, Brown JB, Rozowsky J, Harmanci A, Wilder SP, Batzoglou S, Dunham I, Gerstein M, Birney E, et al.\ Reproducibility measures for automatic threshold selection and quality control in ChIP-seq datasets. (submitted), 2012b.

\ \

Li QH, Brown JB, Huang HY, Bickel PJ.\ \ Measuring reproducibility of high-throughput experiments.\ Ann. Appl. Stat. 2011; 5(3):1752-1779.

\ \

Data Release Policy

\

While primary ENCODE data is subject to a restriction period as described in the\ \ ENCODE data release policy,\ this restriction does not apply to the integrative analysis results.\ The data in this track are freely available.

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superTrack wgEncodeTfBindingSuper dense\ track wgEncodeAwgTfbsUniform\ type narrowPeak\ visibility dense\ chainMonDom5 Opossum Chain chain monDom5 Opossum (Oct. 2006 (Broad/monDom5)) Chained Alignments 3 3 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Opossum (Oct. 2006 (Broad/monDom5)) Chained Alignments\ otherDb monDom5\ parent vertebrateChainNetViewchain off\ shortLabel Opossum Chain\ subGroups view=chain species=s003 clade=c00\ track chainMonDom5\ type chain monDom5\ chainGorGor3 Gorilla Chain chain gorGor3 Gorilla (May 2011 (gorGor3.1/gorGor3)) Chained Alignments 3 3 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Gorilla (May 2011 (gorGor3.1/gorGor3)) Chained Alignments\ otherDb gorGor3\ parent primateChainNetViewchain off\ shortLabel Gorilla Chain\ subGroups view=chain species=s011 clade=c00\ track chainGorGor3\ type chain gorGor3\ chainCriGri1 Chinese hamster Chain chain criGri1 Chinese hamster (Jul. 2013 (C_griseus_v1.0/criGri1)) Chained Alignments 3 3 0 0 0 255 255 0 1 0 0 compGeno 1 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Description

\ \

This track is produced as part of the ENCODE Transcriptome Project. \ Transcription of different \ \ RNA extracts from different \ \ sub-cellular localizations in different \ cell lines\ is compared in companion experiments using three different technologies: \ tiling arrays, RNA-seq using Solexa, and RNA-seq using SOLiD. The\ tiling array data are shown in this track. \ \ \ The Transfrags data are lifted over from the hg18 assembly. The Raw Transfrags are available for download only. Other views are available on the hg18 assembly.\

\ \

Display Conventions and Configuration

\ \

To show only selected subtracks, uncheck the boxes next to the tracks that \ you wish to hide.

\ \
\
Transfrags\
The filtered transfrags view excludes repeats and other known annotations \ including: \ tRNAs and rRNAs, mi/snoRNAs, things mapping to the mitochondrial or Y \ chromosomes, and many predicted snoRNAs and miRNAs.\
\ \

Methods

\ \

\ Cells were grown according to the approved \ ENCODE cell culture protocols.\ RNA molecules longer than 200 nt \ and present in RNA population isolated from different subcellular compartments \ (such as cytosol, nucleus, polysomes and others) were fractionated into polyA+ \ and polyA- fractions as described in\ these\ protocols.\ Each RNA fraction was converted into double-stranded cDNA using \ random hexamers, \ labeled and hybridized to a tiling 91-array set containing probes against the \ non-repetitive \ portion of the human genome tiled on average every 5 bp (center-to-center of \ each consecutive 25-mers).

\ \

All arrays were scaled to a median array intensity of 330. Within a sliding \ 61 bp window \ centered on each probe, an estimate of RNA abundance \ was found by calculating the median of all pairwise average PM-MM values, \ where PM is a \ perfect match and MM is a mismatch. Kapranov et al. (2002), Cheng \ et al. (2005) , Kapranov et al. (2007), and Cawley \ et al. (2004) \ are good references for the experimental methods. Cawley et al. \ also describes the analytical methods.\ \

Verification

\ \

The reproducibility of the labeling method was assessed separately. Three \ independent \ technical replicates were generated from the same RNA pool for each RNA \ preparation and \ hybridized to duplicate arrays (two technical replicates) that contain the \ ENCODE regions. \ Labeled RNA samples were then pooled and hybridized to the tiling 91-array \ set spanning \ the whole genome. Transcribed regions (transfrags; see the Raw Transfrags \ view) were \ generated from the Raw Signal by merging genomic positions to which \ probes \ are mapped. This merging was based on a 5% false positive rate cutoff in \ negative \ bacterial controls, a maximum gap (MaxGap) of 40 base-pairs and minimum run \ (MinRun) \ of 40 base-pairs.

\ \

Release Notes

\ The track data were originally computed on the Human March 2006 assembly (hg18);\ the coordinates of the Transfrags were transformed to this assembly using UCSC's liftOver\ program.

\

Credits

\ \

These data were generated and analyzed by the transcriptome group at \ Affymetrix\ and Cold Spring Harbor Laboratories: \ P. Kapranov, I. Bell, E. Dumais, \ J. Drenkow, J. Dumais, N. Garg, M. Lubinsky,\ Carrie A. Davis, Huaien Wang, Kimberly Bell, Jorg Drenkow, Chris Zaleski,\ and Thomas R. Gingeras.\
\ \

Contact: \ \ Tom Gingeras

\ \ \

References

\ \

\ Cawley S, Bekiranov S, Ng HH, Kapranov P, Sekinger EA, Kampa D, Piccolboni A, Sementchenko V, Cheng J, Williams AJ et al.\ \ Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs.\ Cell. 2004 Feb 20;116(4):499-509.\

\ \

\ Cheng J, Kapranov P, Drenkow J, Dike S, Brubaker S, Patel S, Long J, Stern D, Tammana H, Helt G et al.\ \ Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution.\ Science. 2005 May 20;308(5725):1149-54.\

\ \

\ Kapranov P, Cawley SE, Drenkow J, Bekiranov S, Strausberg RL, Fodor SP, Gingeras TR.\ \ Large-scale transcriptional activity in chromosomes 21 and 22.\ Science. 2002 May 3;296(5569):916-9.\

\ \

\ Kapranov P, Cheng J, Dike S, Nix DA, Duttagupta R, Willingham AT, Stadler PF, Hertel J, Hackermüller J, Hofacker IL et al.\ \ RNA maps reveal new RNA classes and a possible function for pervasive transcription.\ Science. 2007 Jun 8;316(5830):1484-8.\

\ \

Publications

\ \

\ Djebali S, Lagarde J, Kapranov P, Lacroix V, Borel C, Mudge JM, Howald C, Foissac S, Ucla C, Chrast J et al.\ \ Evidence for transcript networks composed of chimeric RNAs in human cells.\ PLoS One. 2012;7(1):e28213.\

\ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior \ consent, submit publications that use an unpublished ENCODE dataset until \ nine months following the release of the dataset. This date is listed in \ the Restricted Until column, above. The full data release policy \ for ENCODE is available \ here.

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url http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4\ urlLabel FANTOM5 Details:\ pubsMarkerBand Bands bed 5 Cytogenetic Bands in Publications 0 3 0 0 0 127 127 127 0 0 0 phenDis 1 longLabel Cytogenetic Bands in Publications\ parent pubs off\ priority 3\ shortLabel Bands\ track pubsMarkerBand\ type bed 5\ visibility hide\ iscaBenignGainCum Benign Gain bedGraph 4 ClinGen CNVs: Benign Gain Coverage 2 3 0 0 200 127 127 227 0 0 0 phenDis 0 color 0,0,200\ longLabel ClinGen CNVs: Benign Gain Coverage\ parent iscaViewTotal\ shortLabel Benign Gain\ subGroups view=cov class=ben level=sub\ track iscaBenignGainCum\ lincRNAsCTBrain Brain bed 5 + lincRNAs from brain 1 3 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from brain\ parent lincRNAsAllCellType on\ shortLabel Brain\ subGroups view=lincRNAsRefseqExp tissueType=brain\ track lincRNAsCTBrain\ clinGenGeneDisease ClinGen Validity bigBed 9 + ClinGen Gene-Disease Validity Classification 3 3 0 0 0 127 127 127 0 0 0 phenDis 1 bedNameLabel Associated Disease\ bigDataUrl /gbdb/hg19/bbi/clinGen/clinGenGeneDisease.bb\ filterLabel.Classification ClinGen Gene-Disease Validity Classification\ filterLabel.Inheritance Inheritance Pattern\ filterLabel.SOPversion ClinGen SOP Version Number\ filterValues.Classification Definitive,Strong,Moderate,Limited,Animal Model Only,No Reported Evidence,Disputed,Refuted\ filterValues.Inheritance Autosomal Dominant,Autosomal Recessive,Semidominant,X-Linked,X-linked recessive,Other\ filterValues.SOPversion SOP4,SOP5,SOP6,SOP7\ itemRgb on\ longLabel ClinGen Gene-Disease Validity Classification\ mouseOverField Mouseover\ noScoreFilter on\ parent clinGenComp on\ priority 3\ searchIndex name,geneSymbol,HGNCid,MONDOid,Classification\ sepFields MONDOid,SOPversion\ shortLabel ClinGen Validity\ skipFields Mouseover\ track clinGenGeneDisease\ type bigBed 9 +\ urls geneSymbol="https://search.clinicalgenome.org/kb/genes/$$" ClinGenURL="https://search.clinicalgenome.org/kb/gene-validity/$$" HGNCid="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$$" MONDOid="https://monarchinitiative.org/disease/$$"\ visibility pack\ consIndelsHgMmCanFam Cons Indels MmCf bed 5 . Indel-based Conservation for Human hg19, Mouse mm8 and Dog canFam2 0 3 0 60 120 127 157 187 1 0 0

Description

\

\ This track displays regions showing evidence for conservation with respect \ to mutations involving sequence insertions and deletions (indels).\ These “indel-purified sequences” (IPSs) were obtained by comparing the \ predictions of a neutral model of indel evolution with data obtained from \ human (hg19), mouse (mm8) and dog (camFam2) alignments (Lunter et al., 2006)\ The evidence for conservation is statistical, and each region is annotated \ with a posterior probability. It may be interpreted as the probability that \ the segment shows the paucity of indels by selection, rather than by random \ chance.\ Apart from the underlying alignment, these data are independent of the \ conservation of the nucleotide sequence itself. Any inferred conservation \ of the sequence, e.g. as shown by phastCons, is therefore independent evidence \ for selection. It may happen that sequence is conserved with respect to \ indel mutations without concomitant evidence of conservation of the \ nucleotide sequence. The opposite may also happen.\

\ \

Display Conventions

\ The score (based on the false discovery rate, FDR) is reflected in the \ bluescale density gradient coloring the track items. Lighter colours reflect a \ higher FDR.\ \

Methods

\

\ In the absence of selection, indels have a certain predicted distribution \ over the genome. The actual distribution shows an over-abundance of ungapped \ regions, due to selection purifying functional sequence from the deleterious \ effects of indels. Neutrally evolving sequence, such as (by and large) \ ancestral repeats, show an exceedingly good fit to the neutral predictions. \ This accurate fit allows the identification of a good proportion of conserved \ sequence at a relatively low false discovery rate (FDR). For example, at \ an FDR of 10%, the predicted sensitivity is 75%.\ Each identified indel-purified sequence (IPS) is annotated by two numbers: a \ false discovery rate (FDR), and a posterior probability (p). \ The FDR refers to a set of segments, not a given segment by itself. In this \ case, it refers to the minimum FDR of all sets that include the segment of \ interest. For example, a segment annotated with a 10% FDR also belongs to a \ set with a 15% FDR, but not a set with a 5% FDR.\ The posterior probability does refer to the single segment by itself. It has \ a frequentist interpretation, namely, as the proportion of regions, annotated \ with the same posterior probability, that have been under purifying selection, \ rather than showing the observed lack of indels by random chance.\ The data include segments for a false-discovery rate of up to 50%. The \ score directly reflects the FDR, through the following formula:\

\ score = 90 / (FDR + 0.08)
\ \ This maps FDR 1% (the most restrictive category) to 999, and FDR 10% to 500.\ For further details of the Methods, see Lunter et al., 2006.\

\ \

Verification

\

\ The neutral indel model was calibrated using ancestral repeats, against which \ it showed an excellent fit. Among the identified IPSs at 10% FDR and \ predicted sensitivity of 75%, we found 75% of annotated protein-coding \ exons (weighted by length), and 75% of the 222 microRNAs that were \ annotated at the time. Ancestral repeats were heavily depleted among the \ identified segments.

\ \

Credits

\

\ These data were generated by Gerton Lunter and Chris Ponting, MRC Functional \ Genetics Unit, University of Oxford, United Kingdom and Jotun Hein,\ Department of Statistics, University of Oxford, United Kingdom.

\ \

References

\

\ Lunter G, Ponting CP, Hein J.\ Genome-wide identification of human functional DNA using a neutral indel model.\ PLoS Comput Biol. 2006 Jan;2(1):e5.\ PMID: 16410828; PMC: PMC1326222\

\ \

\ The data may also be browsed here.\

\ compGeno 1 color 0, 60, 120\ group compGeno\ longLabel Indel-based Conservation for Human hg19, Mouse mm8 and Dog canFam2\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ priority 3\ shortLabel Cons Indels MmCf\ track consIndelsHgMmCanFam\ type bed 5 .\ useScore 1\ visibility hide\ wgEncodeCrgMapabilityAlign40mer CRG Align 40 bigWig 0.00 1.00 Alignability of 40mers by GEM from ENCODE/CRG(Guigo) 0 3 0 100 0 127 177 127 0 0 0 map 1 color 0,100,0\ longLabel Alignability of 40mers by GEM from ENCODE/CRG(Guigo)\ origAssembly hg19\ parent wgEncodeMapabilityViewCRGMAP off\ shortLabel CRG Align 40\ subGroups view=CRGMAP win=w040 lab=CRG\ track wgEncodeCrgMapabilityAlign40mer\ type bigWig 0.00 1.00\ dbSnp153Mult dbSNP(153) Mult. bigDbSnp Short Genetic Variants from dbSNP Release 153 that Map to Multiple Genomic Loci 1 3 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg19/snp/dbSnp153Mult.bb\ defaultGeneTracks knownGene\ longLabel Short Genetic Variants from dbSNP Release 153 that Map to Multiple Genomic Loci\ parent dbSnp153ViewVariants off\ priority 3\ shortLabel dbSNP(153) Mult.\ subGroups view=variants\ track dbSnp153Mult\ dbVar_common_global dbVar Curated All Populations bigBed 9 + . NCBI dbVar Curated Common SVs: all populations 3 3 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg19/bbi/dbVar/common_global.bb\ longLabel NCBI dbVar Curated Common SVs: all populations\ parent dbVar_common on\ shortLabel dbVar Curated All Populations\ track dbVar_common_global\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ affyExonProbesetExtended Extended PS bed 12 Affymetrix Human Exon Array Extended Probesets 1 3 139 69 19 197 162 137 0 0 0 expression 1 color 139,69,19\ longLabel Affymetrix Human Exon Array Extended Probesets\ parent affyExonProbeset\ shortLabel Extended PS\ subGroups view=v1Probeset level=L2Extended\ track affyExonProbesetExtended\ dhcVcfHGDP00521 French Variants vcfTabix French Individual (HGDP00521) Variant Calls 0 3 0 0 0 127 127 127 0 0 0 denisova 1 longLabel French Individual (HGDP00521) Variant Calls\ parent dhcVcfModern\ priority 3\ shortLabel French Variants\ track dhcVcfHGDP00521\ vcfDoMaf off\ rnaCluster Gene Bounds bed 12 . Gene Boundaries as Defined by RNA and Spliced EST Clusters 0 3 200 0 50 227 127 152 0 0 0

Description

\

\ This track shows the boundaries of genes and the direction of\ transcription as deduced from clustering spliced ESTs and mRNAs\ against the genome. When many spliced variants of the same gene exist, \ this track shows the variant that spans the greatest distance in the \ genome.

\ \

Method

\

\ ESTs and mRNAs from \ GenBank were aligned against the genome using BLAT.\ Alignments with less than 97.5% base identity within the aligning blocks \ were filtered out. When multiple alignments occurred, only those\ alignments with a percentage identity within 0.2% of the\ best alignment were kept. The following alignments were also discarded: \ ESTs that aligned without any introns, blocks smaller than 10 bases, and \ blocks smaller than 130 bases that were not located next to an intron. \ The orientations of the ESTs and mRNAs were deduced from the GT/AG splice \ sites at the introns; ESTs and mRNAs with overlapping blocks\ on the same strand were merged into clusters. Only the\ extent and orientation of the clusters are shown in this track.

\

\ Scores for individual gene boundaries were assigned based on the number of \ cDNA alignments used:\

    \
  • 300 — based on a single cDNA alignment
    \
  • 600 — based on two alignments
    \
  • 900 — based on three alignments
    \
  • 1000 — based on four or more alignments
    \

\ \

Credits

\

\ This track, which was originally developed by Jim Kent,\ was generated at UCSC and uses data submitted to GenBank by \ scientists worldwide.

\ \

References

\

\ Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. \ GenBank: update. Nucleic Acids Res. \ 2004 Jan 1;32:D23-6.

\

\ Kent WJ.\ BLAT - the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.

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wgEncodeGisRnaSeqViewPlusRawSignal on\ shortLabel GM12 cyto pA+ + 1\ subGroups view=PlusRawSignal cellType=t1GM12878 rnaExtract=longPolyA rep=rep1 localization=cytosol\ track wgEncodeGisRnaSeqGm12878CytosolPapPlusRawRep1\ type bigWig 1.000000 25062.000000\ wgEncodeGisDnaPetGm12878F10kAln GM12878 10k bam ENCODE GIS DNA PET Alignments (10k frags in GM12878 cells) 1 3 153 38 0 204 146 127 0 0 0 varRep 1 color 153,38,0\ longLabel ENCODE GIS DNA PET Alignments (10k frags in GM12878 cells)\ parent wgEncodeGisDnaPetViewAlignments on\ shortLabel GM12878 10k\ subGroups cellType=t1GM12878 fragSize=c10K\ track wgEncodeGisDnaPetGm12878F10kAln\ wgEncodeDukeAffyExonGm12878SimpleSignalRep3V2 GM12878 3 bigBed 6 + GM12878 Exon array Signal Rep 3 from ENCODE/Duke 0 3 153 38 0 204 146 127 1 0 0 expression 1 color 153,38,0\ longLabel GM12878 Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel GM12878 3\ subGroups cellType=t1GM12878 treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonGm12878SimpleSignalRep3V2\ type bigBed 6 +\ wgEncodeAwgTfbsHaibGm12878BatfPcr1xUniPk GM12878 BATF narrowPeak GM12878 TFBS Uniform Peaks of BATF from ENCODE/HudsonAlpha/Analysis 1 3 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of BATF from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 BATF\ subGroups tier=a10 cellType=a10GM12878 factor=BATF lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878BatfPcr1xUniPk\ wgEncodeOpenChromChipGm12878CmycBaseOverlapSignal GM12878 cMyc OS bigWig 0.000000 599.000000 GM12878 cMyc TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 3 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 cMyc TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo\ shortLabel GM12878 cMyc OS\ subGroups treatment=AANONE view=SIGBO factor=CMYC cellType=t1GM12878\ track wgEncodeOpenChromChipGm12878CmycBaseOverlapSignal\ type bigWig 0.000000 599.000000\ wgEncodeUncBsuProtGencGm12878CytosolIngelpepMapGcFt GM12878 Cyt bigBed 12 GM12878 Cytosol InGel ProtG GENCODE11 Hg19 Mapping from ENCODE/UNC/BSU 2 3 153 38 0 204 146 127 1 0 0 expression 1 color 153,38,0\ longLabel GM12878 Cytosol InGel ProtG GENCODE11 Hg19 Mapping from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtGencViewpepMapGcFt\ shortLabel GM12878 Cyt\ subGroups view=pepMapGcFt cellType=GM12878 localization=CYTOSOL protocol=INGEL\ track wgEncodeUncBsuProtGencGm12878CytosolIngelpepMapGcFt\ type bigBed 12\ wgEncodeAffyRnaChipFiltTransfragsGm12878CytosolLongpolya GM12878 cyto pA+ broadPeak GM12878 cytosol polyA+ Microarray Transfrags from ENCODE Affy/CSHL 3 3 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA+ Microarray Transfrags from ENCODE Affy/CSHL\ parent wgEncodeAffyRnaChipViewFiltTransfrags\ shortLabel GM12878 cyto pA+\ subGroups view=FiltTransfrags cellType=t1GM12878 localization=bCYTOSOL rnaExtract=longPolyA\ track wgEncodeAffyRnaChipFiltTransfragsGm12878CytosolLongpolya\ type broadPeak\ wgEncodeSunyRipSeqGm12878Elavl1Pk GM12878 ELAVL1 Pk broadPeak GM12878 ELAVL1 RIP-seq Analysis from ENCODE/SUNY 2 3 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ELAVL1 RIP-seq Analysis from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewPeaks on\ shortLabel GM12878 ELAVL1 Pk\ subGroups view=Peaks factor=ELAVL1 cellType=t1GM12878 rep=Pooled\ track wgEncodeSunyRipSeqGm12878Elavl1Pk\ type broadPeak\ wgEncodeBroadHistoneGm12878Ezh239875Pk GM12878 EZH2 broadPeak GM12878 EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 3 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel GM12878 EZH2\ subGroups view=Peaks factor=EZH239875 cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878Ezh239875Pk\ type broadPeak\ wgEncodeOpenChromFaireGm12878BaseOverlapSignal GM12878 FAIRE OS bigWig 0.000000 2739.000000 GM12878 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 3 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo\ shortLabel GM12878 FAIRE OS\ subGroups view=SIGBO cellType=t1GM12878 treatment=AANONE\ track wgEncodeOpenChromFaireGm12878BaseOverlapSignal\ type bigWig 0.000000 2739.000000\ wgEncodeSunyAlbanyGeneStGm12878Igf2bp1RbpAssocRnaV2 GM12878 IGF2BP1 broadPeak GM12878 IGF2BP1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 3 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 IGF2BP1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt\ shortLabel GM12878 IGF2BP1\ subGroups cellType=t1GM12878 factor=IGF2BP1\ track wgEncodeSunyAlbanyGeneStGm12878Igf2bp1RbpAssocRnaV2\ type broadPeak\ wgEncodeUncBsuProtGm12878NucleusSig GM12878 nucleus peptideMapping GM12878 Nucleus Proteogenomic Hg19 Mapping Hits from ENCODE/UNC/BSU 2 3 153 38 0 204 146 127 1 0 0 expression 1 color 153,38,0\ longLabel GM12878 Nucleus Proteogenomic Hg19 Mapping Hits from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtViewSignal\ shortLabel GM12878 nucleus\ subGroups view=Signal cellType=t1GM12878 localization=nucleus protocol=INGEL\ track wgEncodeUncBsuProtGm12878NucleusSig\ type peptideMapping\ visibility full\ wgEncodeOpenChromDnaseGm12878BaseOverlapSignal GM12878 OS bigWig 0.000000 627.000000 GM12878 DNaseI HS Overlap Signal from ENCODE/Duke 2 3 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo\ shortLabel GM12878 OS\ subGroups view=SIGBO cellType=t1GM12878 treatment=zNONE\ track wgEncodeOpenChromDnaseGm12878BaseOverlapSignal\ type bigWig 0.000000 627.000000\ wgEncodeUwRepliSeqGm12878S2PctSignalRep1 GM12878 S2 1 bigWig 1.000000 100.000000 GM12878 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 3 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel GM12878 S2 1\ subGroups view=v1PctSignal cellType=t1GM12878 phase=p3S2 rep=rep1\ track wgEncodeUwRepliSeqGm12878S2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeAwgSegmentationSegwayGm12878 GM12878 Segway bed 9 . GM12878 Genome Segmentation by Segway from ENCODE/Analysis 0 3 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12878 Genome Segmentation by Segway from ENCODE/Analysis\ parent wgEncodeAwgSegmentation off\ shortLabel GM12878 Segway\ subGroups tier=t1 cellType=t1GM12878 method=Segway\ track wgEncodeAwgSegmentationSegwayGm12878\ type bed 9 .\ wgEncodeUwDnaseGm12878RawRep1 GM12878 Sg 1 bigWig 1.000000 19102.000000 GM12878 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 3 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw\ shortLabel GM12878 Sg 1\ subGroups view=zRSig cellType=t1GM12878 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm12878RawRep1\ type bigWig 1.000000 19102.000000\ wgEncodeSunyAlbanyTilingGm12878T7tagRbpAssocRna GM12878 T7Tag broadPeak GM12878 T7Tag RBP Associated RNA by Tiling Array from ENCODE/SUNY 3 3 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 T7Tag RBP Associated RNA by Tiling Array from ENCODE/SUNY\ parent wgEncodeSunyAlbanyTilingView\ shortLabel GM12878 T7Tag\ subGroups view=RbpAssocRna cellType=t1GM12878 antibody=T7Tag\ track wgEncodeSunyAlbanyTilingGm12878T7tagRbpAssocRna\ type broadPeak\ wgEncodeCaltechRnaSeqGm12878R2x75Th1014Il200SigRep1V4 GM78 2x75 Sg 1 bigWig 0.025000 168603.000000 GM12878 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech 2 3 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal\ shortLabel GM78 2x75 Sg 1\ subGroups view=Signal cellType=t1GM12878 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12878R2x75Th1014Il200SigRep1V4\ type bigWig 0.025000 168603.000000\ wgEncodeHaibTfbsGm12878Atf2sc81188V0422111PkRep2 GM78 ATF2 V11 2 broadPeak GM12878 ATF2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 3 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ATF2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 ATF2 V11 2\ subGroups view=Peaks factor=ATF2SC81188 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Atf2sc81188V0422111PkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12878Brca1a300IggmusPk GM78 BRC1 IgM narrowPeak GM12878 BRCA1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 3 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 BRCA1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 BRC1 IgM\ subGroups view=Peaks factor=BRCA1A300 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Brca1a300IggmusPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqGm12878CellPamContigs GM78 cel pA- C bed 6 + GM12878 whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 3 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs on\ shortLabel GM78 cel pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1GM12878 localization=CELL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqGm12878CellPamContigs\ type bed 6 +\ wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapMinusRawRep2 GM78 cell TAP - 2 bigWig 1.000000 4146497.000000 GM12878 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 3 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel GM78 cell TAP - 2\ subGroups view=MinusSignal cellType=t1GM12878 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapMinusRawRep2\ type bigWig 1.000000 4146497.000000\ wgEncodeUwTfbsGm12878CtcfStdRawRep1 GM78 CTCF Sg 1 bigWig 1.000000 2723.000000 GM12878 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 3 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig on\ shortLabel GM78 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t1GM12878 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12878CtcfStdRawRep1\ type bigWig 1.000000 2723.000000\ wgEncodeRikenCageGm12878CytosolPamMinusSignal GM78 cyto pA- - 1 bigWig 0.040000 4464.319824 GM12878 cytosol polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 3 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 cytosol polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel GM78 cyto pA- - 1\ subGroups view=MinusRawSignal cellType=t1GM12878 localization=cytosol rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageGm12878CytosolPamMinusSignal\ type bigWig 0.040000 4464.319824\ wgEncodeUwHistoneGm12878H3k4me3StdRawRep1 GM78 H3K4M3 Sg 1 bigWig 1.000000 2525.000000 GM12878 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 3 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig on\ shortLabel GM78 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t1GM12878 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12878H3k4me3StdRawRep1\ type bigWig 1.000000 2525.000000\ gnomadSvNonneuro gnomAD Non-Neuro SV's bigBed 9 + gnomAD Structural Variants Non-neuro Only 1 3 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/variant/$$?dataset=gnomad_sv_r2_1 varRep 1 bigDataUrl /gbdb/hg19/gnomAD/structuralVariants/gnomad_v2.1_sv.nonneuro.sites.bb\ filter.svlen 50:199840172\ filterByRange.svlen on\ filterLabel.svlen Filter by Variant Size\ filterLabel.svtype Type of Variation\ filterValues.svtype BND|Breakend,CPX|Complex,CTX|Translocation,DEL|Deletion,DUP|Duplication,INS|Insertion,INV|Inversion,MCNV|Multi-allele CNV\ itemRgb on\ longLabel gnomAD Structural Variants Non-neuro Only\ mouseOverField _mouseOver\ parent gnomadStructuralVariants off\ searchIndex name\ shortLabel gnomAD Non-Neuro SV's\ track gnomadSvNonneuro\ type bigBed 9 +\ url https://gnomad.broadinstitute.org/variant/$$?dataset=gnomad_sv_r2_1\ urlLabel gnomAD Structural Variant Browser\ gnomadMissense gnomAD Regional Missense Constraint (ExAc Dataset, as on DECIPHER Browser) bigBed 12 + gnomAD Predicted Regional Missense Constraint Metrics (O/E scores from ExAc Dataset) v2.1.1 3 3 0 0 0 127 127 127 0 0 0 varRep 1 bigDataUrl /gbdb/hg19/gnomAD/missense/missenseConstrained.bb\ defaultLabelFields geneName\ filter.obs_exp 0:5\ filterByRange.obs_exp on\ filterLabel.obs_exp Show only items between this O/E range\ group varRep\ itemRgb on\ labelFields name,geneName\ longLabel gnomAD Predicted Regional Missense Constraint Metrics (O/E scores from ExAc Dataset) v2.1.1\ mouseOverField _mouseOver\ parent gnomadPLI off\ priority 3\ shortLabel gnomAD Regional Missense Constraint (ExAc Dataset, as on DECIPHER Browser)\ track gnomadMissense\ type bigBed 12 +\ hinv70PseudoGene H-Inv pseudo-genes bed 12 H-Inv v7.0 Pseudogene Predictions 0 3 30 130 210 142 192 232 0 0 0 http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$$ genes 1 color 30,130,210\ longLabel H-Inv v7.0 Pseudogene Predictions\ parent hinv70Composite\ priority 3\ shortLabel H-Inv pseudo-genes\ track hinv70PseudoGene\ wgEncodeHaibGenotypeH1hescRegionsRep2 H1-hESC 1 bed 9 + H1-hESC Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB 0 3 0 0 0 127 127 127 0 0 0 varRep 1 longLabel H1-hESC Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB\ parent wgEncodeHaibGenotype on\ shortLabel H1-hESC 1\ subGroups cellType=t1H1HESC obtainedBy=HudsonAlpha treatment=None rep=rep1\ track wgEncodeHaibGenotypeH1hescRegionsRep2\ type bed 9 +\ wgEncodeHaibMethylRrbsH1hescHaibSitesRep1 H1-hESC 1 bed 9 + H1-hESC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 3 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs on\ shortLabel H1-hESC 1\ subGroups cellType=t1H1HESC obtainedBy=HAIB treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsH1hescHaibSitesRep1\ type bed 9 +\ wgEncodeFsuRepliChipH1hescWaveSignalRep3 H1-hESC 3 bigWig -1.977997 1.958099 H1-hESC Repli-chip Wavelet-smoothed Signal Rep 3 from ENCODE/FSU 0 3 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Repli-chip Wavelet-smoothed Signal Rep 3 from ENCODE/FSU\ parent wgEncodeFsuRepliChip off\ shortLabel H1-hESC 3\ subGroups view=WaveSignal cellType=t1H1HESC rep=rep3\ track wgEncodeFsuRepliChipH1hescWaveSignalRep3\ type bigWig -1.977997 1.958099\ hapmapSnpsCHB HapMap SNPs CHB bed 6 + HapMap SNPs from the CHB Population (Han Chinese in Beijing, China) 0 3 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HapMap SNPs from the CHB Population (Han Chinese in Beijing, China)\ parent hapmapSnps\ priority 3\ shortLabel HapMap SNPs CHB\ track hapmapSnpsCHB\ wgEncodeRegTxnCaltechRnaSeqHelas3R2x75Il200SigPooled HeLa-S3 bigWig 0 65535 Transcription of HeLa-S3 cells from ENCODE 0 3 227 255 128 241 255 191 0 0 0 regulation 1 color 227,255,128\ longLabel Transcription of HeLa-S3 cells from ENCODE\ parent wgEncodeRegTxn\ priority 3\ shortLabel HeLa-S3\ track wgEncodeRegTxnCaltechRnaSeqHelas3R2x75Il200SigPooled\ type bigWig 0 65535\ dhcHumDerDenAncAllHighFreq HiF bigBed 4 + Modern Human Derived (HighFreq), Denisova Ancestral: All 3 3 0 0 0 127 127 127 0 0 0 denisova 1 color 0,0,0\ longLabel Modern Human Derived (HighFreq), Denisova Ancestral: All\ parent dhcHumDerDenAncAll\ shortLabel HiF\ subGroups view=All subset=All freq=HighFreq\ track dhcHumDerDenAncAllHighFreq\ wgEncodeRegMarkH3k4me1Hsmm HSMM bigWig 0 6265 H3K4Me1 Mark (Often Found Near Regulatory Elements) on HSMM Cells from ENCODE 0 3 120 235 204 187 245 229 0 0 0 regulation 1 color 120,235,204\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on HSMM Cells from ENCODE\ parent wgEncodeRegMarkH3k4me1\ shortLabel HSMM\ table wgEncodeBroadHistoneHsmmH3k4me1StdSig\ track wgEncodeRegMarkH3k4me1Hsmm\ type bigWig 0 6265\ wgEncodeRegMarkH3k4me3Hsmm HSMM bigWig 0 25995 H3K4Me3 Mark (Often Found Near Promoters) on HSMM Cells from ENCODE 0 3 120 235 204 187 245 229 0 0 0 regulation 1 color 120,235,204\ longLabel H3K4Me3 Mark (Often Found Near Promoters) on HSMM Cells from ENCODE\ parent wgEncodeRegMarkH3k4me3\ shortLabel HSMM\ table wgEncodeBroadHistoneHsmmH3k4me3StdSig\ track wgEncodeRegMarkH3k4me3Hsmm\ type bigWig 0 25995\ wgEncodeRegMarkH3k27acHsmm HSMM bigWig 0 5448 H3K27Ac Mark (Often Found Near Regulatory Elements) on HSMM Cells from ENCODE 2 3 120 235 204 187 245 229 0 0 0 regulation 1 color 120,235,204\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on HSMM Cells from ENCODE\ parent wgEncodeRegMarkH3k27ac\ shortLabel HSMM\ table wgEncodeBroadHistoneHsmmH3k27acStdSig\ track wgEncodeRegMarkH3k27acHsmm\ type bigWig 0 5448\ huvecInsitu HUVEC Hi-C hic In situ Hi-C Chromatin Structure on HUVEC 0 3 0 0 0 127 127 127 0 0 0 regulation 1 bigDataUrl /gbdb/hg19/bbi/hic/GSE63525_HUVEC_combined.hic\ longLabel In situ Hi-C Chromatin Structure on HUVEC\ parent rao2014Hic off\ shortLabel HUVEC Hi-C\ track huvecInsitu\ type hic\ xGen_Research_Targets IDT xGen V1.0 T bigBed IDT - xGen Exome Research Panel V1.0 Target Regions 1 3 255 176 0 255 215 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/xgen-exome-research-panel-targets-hg19.bb\ color 255,176,0\ longLabel IDT - xGen Exome Research Panel V1.0 Target Regions\ parent exomeProbesets off\ shortLabel IDT xGen V1.0 T\ track xGen_Research_Targets\ type bigBed\ visibility dense\ jaspar2020 JASPAR 2020 TFBS bigBed 6 + JASPAR CORE 2020 - Predicted Transcription Factor Binding Sites 0 3 0 0 0 127 127 127 1 0 0 http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all regulation 1 bigDataUrl /gbdb/hg19/jaspar/JASPAR2020.bb\ filterValues.name Ahr::Arnt,Alx1,ALX3,Alx4,Ar,ARGFX,Arid3a,Arid3b,Arid5a,Arnt,ARNT2,ARNT::HIF1A,Arntl,Arx,ASCL1,ASCL1(var.2),Ascl2,Atf1,ATF2,ATF3,ATF4,ATF6,ATF7,Atoh1,ATOH1(var.2),ATOH7,BACH1,Bach1::Mafk,BACH2,BACH2(var.2),BARHL1,BARHL2,BARX1,BARX2,BATF,BATF3,BATF::JUN,BCL6,BCL6B,Bhlha15,BHLHA15(var.2),BHLHE22,BHLHE22(var.2),BHLHE23,BHLHE40,BHLHE41,BSX,CDX1,CDX2,CDX4,CEBPA,CEBPB,CEBPD,CEBPE,CEBPG,CEBPG(var.2),CENPB,CLOCK,CREB1,CREB3,CREB3L1,Creb3l2,CREB3L4,CREB3L4(var.2),Creb5,CREM,Crx,CTCF,CTCFL,CUX1,CUX2,DBP,Ddit3::Cebpa,Dlx1,Dlx2,Dlx3,Dlx4,DLX5,DLX6,Dmbx1,Dmrt1,DMRT3,DMRTA2,DMRTC2,DPRX,DRGX,Dux,DUX4,DUXA,E2F1,E2F2,E2F3,E2F4,E2F6,E2F7,E2F8,EBF1,Ebf2,EBF3,EGR1,EGR2,EGR3,EGR4,EHF,ELF1,ELF2,ELF3,ELF4,ELF5,ELK1,ELK3,ELK4,EMX1,EMX2,EN1,EN2,EOMES,ERF,ERG,ESR1,ESR2,ESRRA,ESRRB,Esrrg,ESX1,ETS1,ETS2,ETV1,ETV2,ETV3,ETV4,ETV5,ETV6,EVX1,EVX2,EWSR1-FLI1,FERD3L,FEV,FIGLA,FLI1,FOS,FOSB::JUN,FOSB::JUNB,FOSB::JUNB(var.2),FOS::JUN,FOS::JUNB,FOS::JUND,FOS::JUN(var.2),FOSL1,FOSL1::JUN,FOSL1::JUNB,FOSL1::JUND,FOSL1::JUND(var.2),FOSL1::JUN(var.2),FOSL2,FOSL2::JUN,FOSL2::JUNB,FOSL2::JUNB(var.2),FOSL2::JUND,FOSL2::JUND(var.2),FOSL2::JUN(var.2),FOXA1,FOXA2,FOXA3,FOXB1,FOXC1,FOXC2,FOXD1,FOXD2,Foxd3,FOXE1,Foxf1,FOXF2,FOXG1,FOXH1,FOXI1,Foxj2,Foxj3,FOXK1,FOXK2,FOXL1,Foxl2,FOXN3,Foxo1,FOXO3,FOXO4,FOXO6,FOXP1,FOXP2,FOXP3,Foxq1,GABPA,GATA1,GATA1::TAL1,GATA2,GATA3,GATA4,GATA5,GATA6,GBX1,GBX2,GCM1,GCM2,GFI1,Gfi1b,GLI2,GLI3,GLIS1,GLIS2,GLIS3,Gmeb1,GMEB2,GRHL1,GRHL2,GSC,GSC2,GSX1,GSX2,Hand1::Tcf3,HAND2,HES1,HES2,HES5,HES6,HES7,HESX1,HEY1,HEY2,Hic1,HIC2,HIF1A,HINFP,HLF,HLTF,HMBOX1,Hmx1,Hmx2,Hmx3,HNF1A,HNF1B,HNF4A,HNF4A(var.2),HNF4G,HOXA1,HOXA10,Hoxa11,HOXA13,HOXA2,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC8,HOXC9,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,HSF1,HSF2,HSF4,IKZF1,INSM1,IRF1,IRF2,IRF3,IRF4,IRF5,IRF6,IRF7,IRF8,IRF9,Isl1,ISL2,ISX,JDP2,JDP2(var.2),JUN,JUNB,JUNB(var.2),JUND,JUND(var.2),JUN::JUNB,JUN::JUNB(var.2),JUN(var.2),Klf1,KLF10,KLF11,Klf12,KLF13,KLF14,KLF15,KLF16,KLF17,KLF2,KLF3,KLF4,KLF5,KLF6,KLF9,LBX1,LBX2,LEF1,LHX1,LHX2,Lhx3,Lhx4,LHX5,LHX6,Lhx8,LHX9,LIN54,LMX1A,LMX1B,MAF,MAFA,Mafb,MAFF,MAFG,MAFK,MAF::NFE2,MAX,MAX::MYC,MAZ,Mecom,MEF2A,MEF2B,MEF2C,MEF2D,MEIS1,MEIS1(var.2),MEIS2,MEIS2(var.2),MEIS3,MEOX1,MEOX2,MGA,MITF,mix-a,MIXL1,MLX,Mlxip,MLXIPL,MNT,MNX1,MSANTD3,MSC,MSGN1,MSX1,MSX2,Msx3,MTF1,MXI1,MYB,MYBL1,MYBL2,MYC,MYCN,MYF5,MYF6,MYOD1,MYOG,MZF1,MZF1(var.2),NEUROD1,NEUROD2,NEUROG1,NEUROG2,NEUROG2(var.2),NFAT5,NFATC1,NFATC2,NFATC3,NFATC4,NFE2,NFE2L1,Nfe2l2,NFIA,NFIB,NFIC,NFIC::TLX1,NFIC(var.2),NFIL3,NFIX,NFIX(var.2),NFKB1,NFKB2,NFYA,NFYB,NFYC,NHLH1,NHLH2,NKX2-2,NKX2-3,NKX2-5,Nkx2-5(var.2),NKX2-8,Nkx3-1,Nkx3-2,NKX6-1,NKX6-2,NKX6-3,Nobox,NOTO,Npas2,NR1D1,NR1D2,NR1H2::RXRA,Nr1h3::Rxra,NR1H4,NR1H4::RXRA,NR1I2,NR1I3,NR2C1,NR2C2,NR2C2(var.2),Nr2e1,Nr2e3,NR2F1,NR2F1(var.2),NR2F1(var.3),NR2F2,Nr2f6,Nr2f6(var.2),NR2F6(var.3),NR3C1,NR3C2,NR4A1,NR4A2,NR4A2::RXRA,NR5A1,Nr5a2,NR6A1,NRF1,NRL,OLIG1,OLIG2,OLIG3,ONECUT1,ONECUT2,ONECUT3,OSR1,OSR2,OTX1,OTX2,OVOL1,OVOL2,PAX1,Pax2,PAX3,PAX3(var.2),PAX4,PAX5,PAX6,PAX7,PAX9,PBX1,PBX2,PBX3,PDX1,PHOX2A,PHOX2B,PITX1,PITX2,PITX3,PKNOX1,PKNOX2,PLAG1,Plagl1,PLAGL2,POU1F1,POU2F1,POU2F2,POU2F3,POU3F1,POU3F2,POU3F3,POU3F4,POU4F1,POU4F2,POU4F3,POU5F1,POU5F1B,Pou5f1::Sox2,POU6F1,POU6F1(var.2),POU6F2,PPARA::RXRA,PPARD,PPARG,Pparg::Rxra,PRDM1,Prdm15,PRDM4,PROP1,PROX1,PRRX1,PRRX2,Ptf1a,Ptf1a(var.2),Ptf1a(var.3),RARA,RARA::RXRA,RARA::RXRG,RARA(var.2),Rarb,Rarb(var.2),RARB(var.3),Rarg,Rarg(var.2),RARG(var.3),RAX,RAX2,RBPJ,Rbpjl,REL,RELA,RELB,REST,RFX1,RFX2,RFX3,RFX4,RFX5,RFX7,Rhox11,RHOXF1,RORA,RORA(var.2),RORB,RORC,RREB1,RUNX1,RUNX2,RUNX3,Rxra,RXRA::VDR,RXRB,RXRB(var.2),RXRG,RXRG(var.2),SCRT1,SCRT2,SHOX,Shox2,SIX1,SIX2,Six3,Smad2::Smad3,SMAD2::SMAD3::SMAD4,SMAD3,Smad4,SMAD5,SNAI1,SNAI2,SNAI3,SOHLH2,Sox1,SOX10,Sox11,SOX12,SOX13,SOX14,SOX15,Sox17,SOX18,SOX2,SOX21,Sox3,SOX4,Sox5,Sox6,SOX8,SOX9,SP1,SP2,SP3,SP4,SP8,SP9,SPDEF,SPI1,SPIB,SPIC,Spz1,SREBF1,SREBF1(var.2),SREBF2,SREBF2(var.2),SRF,SRY,STAT1,STAT1::STAT2,Stat2,STAT3,Stat4,Stat5a,Stat5a::Stat5b,Stat5b,Stat6,TAL1::TCF3,TBP,TBR1,TBX1,TBX15,TBX18,TBX19,TBX2,TBX20,TBX21,TBX3,TBX4,TBX5,TBX6,TBXT,Tcf12,TCF12(var.2),Tcf21,TCF21(var.2),TCF3,TCF4,TCF7,TCF7L1,TCF7L2,TCFL5,TEAD1,TEAD2,TEAD3,TEAD4,TEF,TFAP2A,TFAP2A(var.2),TFAP2A(var.3),TFAP2B,TFAP2B(var.2),TFAP2B(var.3),TFAP2C,TFAP2C(var.2),TFAP2C(var.3),TFAP2E,TFAP4,TFAP4(var.2),TFCP2,TFDP1,TFE3,TFEB,TFEC,TGIF1,TGIF2,TGIF2LX,TGIF2LY,THAP1,THAP11,THRB,THRB(var.2),THRB(var.3),TLX2,TP53,TP63,TP73,TWIST1,Twist2,UNCX,USF1,USF2,VAX1,VAX2,VDR,VENTX,VEZF1,VSX1,VSX2,Wt1,XBP1,YY1,YY2,ZBED1,ZBTB12,ZBTB14,ZBTB18,ZBTB26,ZBTB32,ZBTB33,ZBTB6,ZBTB7A,ZBTB7B,ZBTB7C,ZEB1,ZFP42,ZFP57,Zfx,ZIC1,Zic1::Zic2,Zic2,ZIC3,ZIC4,ZIC5,ZKSCAN1,ZKSCAN5,ZNF135,ZNF136,ZNF140,ZNF143,ZNF148,ZNF16,ZNF24,ZNF263,ZNF274,Znf281,ZNF282,ZNF317,ZNF341,ZNF354C,ZNF382,ZNF384,ZNF410,Znf423,ZNF449,ZNF460,ZNF528,ZNF652,ZNF682,ZNF684,ZNF740,ZNF75D,ZSCAN29,ZSCAN4\ longLabel JASPAR CORE 2020 - Predicted Transcription Factor Binding Sites\ motifPwmTable hgFixed.jasparVertebrates2020\ parent jaspar off\ priority 3\ shortLabel JASPAR 2020 TFBS\ track jaspar2020\ type bigBed 6 +\ visibility hide\ wgEncodeHaibMethyl450K562SitesRep1 K562 bed 9 K562 Methylation 450K Bead Array from ENCODE/HAIB 1 3 0 0 0 127 127 127 0 0 0 regulation 1 longLabel K562 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 on\ shortLabel K562\ subGroups cellType=t1K562 obtainedBy=HAIB treatment=zNONE\ track wgEncodeHaibMethyl450K562SitesRep1\ type bed 9\ wgEncodeUwAffyExonArrayK562SimpleSignalRep2 K562 2 broadPeak K562 Exon array Signal Rep 2 from ENCODE/UW 0 3 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray on\ shortLabel K562 2\ subGroups cellType=t1K562 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayK562SimpleSignalRep2\ type broadPeak\ wgEncodeBroadHmmK562HMM K562 ChromHMM bed 9 . K562 Chromatin State Segmentation by HMM from ENCODE/Broad 0 3 0 0 0 127 127 127 0 0 0 regulation 1 longLabel K562 Chromatin State Segmentation by HMM from ENCODE/Broad\ origAssembly hg18\ parent wgEncodeBroadHmm\ shortLabel K562 ChromHMM\ subGroups cellType=t1K562\ track wgEncodeBroadHmmK562HMM\ type bed 9 .\ wgEncodeAwgDnaseUwdukeK562UniPk K562 DNase narrowPeak K562 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 3 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform on\ shortLabel K562 DNase\ subGroups tier=a10 cellType=a10K562\ track wgEncodeAwgDnaseUwdukeK562UniPk\ wgEncodeUchicagoTfbsK562Egata2ControlPk K562 GATA2/GFP Pk narrowPeak K562 GATA2 GFP-tag TFBS Peaks from ENCODE/UChicago 3 3 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 GATA2 GFP-tag TFBS Peaks from ENCODE/UChicago\ parent wgEncodeUchicagoTfbsPeaks\ shortLabel K562 GATA2/GFP Pk\ subGroups view=Peaks factor=GATA2 cellType=K562 control=ControlGATA2 rep=repPOOLED\ track wgEncodeUchicagoTfbsK562Egata2ControlPk\ type narrowPeak\ wgEncodeSydhHistoneK562H3k4me3bUcdPk K562 H3K4me3 narrowPeak K562 H3K4me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 3 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K4me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks on\ shortLabel K562 H3K4me3\ subGroups view=Peaks factor=H3K04ME3B cellType=aK562 control=UCD treatment=NONE\ track wgEncodeSydhHistoneK562H3k4me3bUcdPk\ type narrowPeak\ wgEncodeSydhRnaSeqK562Ifna6hPolyaAln K562 pA+ Na6h bam K562 polyA+ IFNa6h RNA-seq Alignments from ENCODE/SYDH 0 3 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 polyA+ IFNa6h RNA-seq Alignments from ENCODE/SYDH\ parent wgEncodeSydhRnaSeqViewAlignments off\ shortLabel K562 pA+ Na6h\ subGroups view=Alignments cellType=t1K562 rnaExtract=polyA treatment=IFNa6h\ track wgEncodeSydhRnaSeqK562Ifna6hPolyaAln\ type bam\ wgEncodeUmassDekker5CK562PkV2 K562 Pk bed 12 K562 5C Peaks from ENCODE/UMass-Dekker 0 3 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 5C Peaks from ENCODE/UMass-Dekker\ parent wgEncodeUmassDekker5C\ shortLabel K562 Pk\ subGroups cellType=t1K562 region=NONE\ track wgEncodeUmassDekker5CK562PkV2\ type bed 12\ wgEncodeGisChiaPetK562Pol2InteractionsRep1 K562 Pol2 Int 1 bed 12 K562 Pol2 ChIA-PET Interactions Rep 1 from ENCODE/GIS-Ruan 2 3 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 Pol2 ChIA-PET Interactions Rep 1 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetInteractions on\ shortLabel K562 Pol2 Int 1\ subGroups view=Interactions factor=POL2 cellType=t1K562 rep=rep1\ track wgEncodeGisChiaPetK562Pol2InteractionsRep1\ type bed 12\ wgEncodeUwDgfK562Sig K562 Sig bigWig 1.000000 70530.000000 K562 DNaseI DGF Per-base Signal from ENCODE/UW 2 3 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal on\ shortLabel K562 Sig\ subGroups view=Signal cellType=t1K562 treatment=aNONE rep=rep1\ track wgEncodeUwDgfK562Sig\ type bigWig 1.000000 70530.000000\ wgEncodeOpenChromSynthK562Pk K562 Syn Pk bed 9 + K562 DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom 0 3 0 0 0 127 127 127 0 0 0 regulation 1 longLabel K562 DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom\ parent wgEncodeOpenChromSynth\ shortLabel K562 Syn Pk\ subGroups cellType=t1K562 treatment=aNone\ track wgEncodeOpenChromSynthK562Pk\ type bed 9 +\ pgKb1Illum KB1 Illumina pgSnp KB1 Genome Variants, Illumina 23.2X 3 3 0 0 0 127 127 127 0 0 0 varRep 1 longLabel KB1 Genome Variants, Illumina 23.2X\ origAssembly hg18\ parent pgSnpPSU\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel KB1 Illumina\ subGroups view=A_PSU id=AA_KB1 type=SNP\ track pgKb1Illum\ phyloP46wayPlacental Mammal Cons wig -13.80 2.94 Placental Mammal Basewise Conservation by PhyloP 2 3 25 25 95 95 25 25 0 0 0 compGeno 0 altColor 95,25,25\ autoScale off\ color 25,25,95\ configurable on\ logoMaf multiz46way\ longLabel Placental Mammal Basewise Conservation by PhyloP\ maxHeightPixels 100:50:11\ noInherit on\ parent cons46wayViewphyloP on\ priority 3\ shortLabel Mammal Cons\ spanList 1\ subGroups view=phyloP clade=mammal\ track phyloP46wayPlacental\ type wig -13.80 2.94\ viewLimits -4:4\ windowingFunction mean\ MaxAFmutG MaxAF Mutation: G bigWig -1.29334 0.75731 BayesDel v1 Score (MaxAF): Mutation is G 2 3 96 182 183 175 218 219 0 0 0

Description

\ \

\ The "Prediction Scores" container track includes subtracks showing the results of prediction\ scores.

\ \

BayesDel

\

BayesDel is a deleteriousness meta-score for coding and non-coding variants, single nucleotide\ variants, and small insertion/deletions. The range of the score is from -1.29334 to 0.75731.\ The higher the score, the more likely the variant is pathogenic.

\ \

\ For gene discovery research, a universal cutoff value (0.0692655 with MaxAF, -0.0570105 without\ MaxAF) was obtained by maximizing sensitivity and specificity in classifying ClinVar variants;\ Version 1 (build date 2017-08-24).

\

\ For clinical variant classification, Bayesdel thresholds have been calculated for a variant to\ reach various levels of evidence; please refer to Pejaver et al. 2022 for general application\ of these scores in clinical applications.\

\ \

Display Conventions and Configuration

\ \

BayesDel

\

There are eight subtracks for the BayesDel track: four include pre-computed MaxAF-integrated BayesDel\ scores for missense variants, one for each base. The other four are of the same format, but scores\ are not MaxAF-integrated.

\ \

For SNVs, at each genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing the reference allele,\ (e.g. A to A) is always set to zero.

\ \

Note: There are cases in which a genomic position will have one value missing.\

\ \

When using this track, zoom in until you can see every base pair at the top of the display.\ Otherwise, there are several nucleotides per pixel under your mouse cursor and instead of an actual\ score, the tooltip text will show the average score of all nucleotides under the cursor. This is\ indicated by the prefix "~" in the mouseover.\

\ \

Data Access

\

BayesDel scores are available at the\ BayesDel website.\ \

Methods

\

BayesDel data was converted from the files provided on the\ BayesDel_170824 Database.\ The number 170824 is the date (2017-08-24) the scores were created. Both sets of BayesDel scores are\ available in this database, one integrated MaxAF (named BayesDel_170824_addAF) and one without\ (named BayesDel_170824_noAF). Data conversion was performed using\ \ custom Python scripts.\

\ \

Credits

\

Thanks to the BayesDel team for providing precomputed data, and to Tiana Pereira, Christopher\ Lee, Gerardo Perez, and Anna Benet-Pages of the Genome Browser team.

\ \

References

\

\ Feng BJ.\ \ PERCH: A Unified Framework for Disease Gene Prioritization.\ Hum Mutat. 2017 Mar;38(3):243-251.\ PMID: 27995669; PMC: PMC5299048\

\ \

\ Pejaver V, Byrne AB, Feng BJ, Pagel KA, Mooney SD, Karchin R, O'Donnell-Luria A, Harrison SM,\ Tavtigian SV, Greenblatt MS et al.\ \ Calibration of computational tools for missense variant pathogenicity classification and ClinGen\ recommendations for PP3/BP4 criteria.\ Am J Hum Genet. 2022 Dec 1;109(12):2163-2177.\ PMID: 36413997; PMC: PMC9748256\

\ \

\ Tian Y, Pesaran T, Chamberlin A, Fenwick RB, Li S, Gau CL, Chao EC, Lu HM, Black MH, Qian D.\ \ REVEL and BayesDel outperform other in silico meta-predictors for clinical variant\ classification.\ Sci Rep. 2019 Sep 4;9(1):12752.\ PMID: 31484976; PMC: PMC6726608\

\ phenDis 0 bigDataUrl /gbdb/hg19/bayesDel/MaxAFBayesDelMutG.bw\ color 96, 182, 183\ html predictionScoresSuper\ longLabel BayesDel v1 Score (MaxAF): Mutation is G\ maxHeightPixels 128:20:8\ parent bayesDel on\ shortLabel MaxAF Mutation: G\ track MaxAFmutG\ type bigWig -1.29334 0.75731\ visibility full\ windowingFunction mean+whiskers\ ucsfMedipSeqBrainCpG MeDIP CpG bigWig 1 298 MeDIP-seq CpG Score 2 3 100 0 0 200 100 0 0 0 0 regulation 0 altColor 200,100,0\ autoScale on\ color 100,0,0\ configurable on\ longLabel MeDIP-seq CpG Score\ maxHeightPixels 128:32:16\ noInherit on\ parent ucsfBrainMethylViewCG\ priority 9\ shortLabel MeDIP CpG\ subGroups view=CG sampleType=Brain assayType=MeDIP2\ track ucsfMedipSeqBrainCpG\ type bigWig 1 298\ yLineOnOff on\ dbSnp155Mult Mult. dbSNP(155) bigDbSnp Short Genetic Variants from dbSNP Release 155 that Map to Multiple Genomic Loci 1 3 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg19/snp/dbSnp155Mult.bb\ defaultGeneTracks knownGene\ longLabel Short Genetic Variants from dbSNP Release 155 that Map to Multiple Genomic Loci\ parent dbSnp155ViewVariants off\ priority 3\ shortLabel Mult. dbSNP(155)\ subGroups view=variants\ track dbSnp155Mult\ mtrG Mutation: G bigWig MTR Score: Mutation is G 2 3 124 39 175 189 147 215 0 0 0 phenDis 0 bigDataUrl /gbdb/hg19/mtr/g.bw\ longLabel MTR Score: Mutation is G\ maxHeightPixels 128:40:8\ parent mtrScores on\ shortLabel Mutation: G\ track mtrG\ type bigWig\ visibility full\ revelG Mutation: G bigWig REVEL: Mutation is G 1 3 150 80 200 202 167 227 0 0 0 phenDis 0 bigDataUrl /gbdb/hg19/revel/g.bw\ longLabel REVEL: Mutation is G\ maxHeightPixels 128:20:8\ maxWindowToDraw 10000000\ maxWindowToQuery 500000\ mouseOverFunction noAverage\ parent revel on\ shortLabel Mutation: G\ track revelG\ type bigWig\ viewLimits 0:1.0\ viewLimitsMax 0:1.0\ visibility dense\ caddG Mutation: G bigWig CADD 1.6 Score: Mutation is G 1 3 100 130 160 177 192 207 0 0 0 phenDis 0 bigDataUrl /gbdb/hg19/cadd/g.bw\ longLabel CADD 1.6 Score: Mutation is G\ maxHeightPixels 128:20:8\ parent cadd on\ shortLabel Mutation: G\ track caddG\ type bigWig\ viewLimits 10:50\ viewLimitsMax 0:100\ visibility dense\ platinumNA12878 NA12878 vcfTabix Platinum genome variant NA12878 3 3 0 0 0 127 127 127 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 1 bigDataUrl /gbdb/hg19/platinumGenomes/NA12878.vcf.gz\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX\ configureByPopup off\ group varRep\ longLabel Platinum genome variant NA12878\ maxWindowToDraw 200000\ parent platinumGenomes\ shortLabel NA12878\ showHardyWeinberg on\ track platinumNA12878\ type vcfTabix\ vcfDoFilter off\ vcfDoMaf off\ visibility pack\ getRmNgsDeadZone NCBI NGS Dead Zone bigBed 3 + NCBI GeT-RM NGS Dead Zone 1 3 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/bbi/problematic/deadZone.bb\ longLabel NCBI GeT-RM NGS Dead Zone\ parent problematic\ priority 3\ shortLabel NCBI NGS Dead Zone\ track getRmNgsDeadZone\ type bigBed 3 +\ visibility dense\ numtSMitochondrion NumtS on mitochon bed 6 . Human NumtS on Mitochondrion 0 3 0 60 120 127 157 187 1 0 0

Description and display conventions

\

\ NumtS (Nuclear mitochondrial sequences) are mitochondrial fragments inserted in nuclear genomic sequences. The most credited hypothesis concerning their generation suggests that in presence of mutagenic agents or under stress conditions fragments of mtDNA escape from mitochondria, reach the nucleus and insert into chromosomes during break repair, although NumtS can derive from duplication of genomic fragments. NumtS may be cause of contamination during human mtDNA sequencing and hence frequent false low heteroplasmic evidences have been reported.\ The Bioinformatics group chaired by M.Attimonelli (Bari, Italy) has produced the RHNumtS compilation annotating more than 500 Human NumtS. To allow the scientific community to access to the compilation and to perform genomics comparative analyses inclusive of the NumtS data, the group has designed the Human NumtS tracks below described.\

\ \

\ The NumtS tracks show the High Score Pairs (HSPs) obtained by aligning the mitochondrial reference genome (NC_012920) with the hg18 release of the human genome.\

\
    \
  1. "NumtS (Nuclear mitochondrial Sequences)" Track\

    \ The "NumtS mitochondrial sequences" track shows the mapping of the HSPs returned by BlastN on the nuclear genome. The shading of the items reflects the similarity returned by BlastN, and the direction of the arrows is concordant with the strand of the alignment. For every item, a link pointing to the mitochondrial mapping is provided, thus allowing a fast cross among the NumtS genomic contexts.\

    \
    2. \ \
  2. "NumtS assembled" Track\

    \ The "NumtS assembled" track shows items obtained by assembling HSPs annotated in the "NumtS" track fulfilling the following conditions:\

      \
    • the orientation of their alignments must be concordant.
      • \
    • the distance between them must be less than 2 kb, on the mitochondrial genome as well as on the nuclear genome.
      • \

    \

    \ Exceptions for the second condition arise when a long repetitive element is present between two HSPs.\

    \
    3. \ \
  3. "NumtS on mitochondrion" Track\

    \ The "NumtS on mitochondrion" track shows the mapping of the HSPs on the mitochondrial genome. The shading of the items reflects the similarity returned by BlastN, and the direction of the arrows is concordant with the strand of the alignment. For every item, a link pointing to the nuclear mapping is provided.\

    \ \
  4. "NumtS on mitochondrion with chromosome placement" Track\

    \ The "NumtS on mitochondrion with chromosome placement" shows the mapping of the HSPs on the mitochondrial genome, but the items are coloured according to the colours assigned to each human chromosome on the UCSC genome browser. No shading is here provided. For every item, a link pointing to the nuclear mapping is provided.\

    \
\ \

Methods

\

\ NumtS mappings were obtained by running Blast2seq (program: BlastN) between each chromosome of of the Human Genome hg18 build and the human mitochondrial reference sequence (rCRS, AC: NC_012920), fixing the e-value threshold to 1e-03. The assembling of the HSPs was performed with spreadsheet interpolation and manual inspection.\

\ \

Verification

\

\ NumtS predicted in silico were validated by carrying out PCR amplification and sequencing on blood-extracted DNA of a healthy individual of European origin. PCR amplification was successful for 275 NumtS and provided amplicons of the expected length. All PCR fragments were sequenced on both strands, and submitted to the EMBL databank.\

\

\ Furthermore, 541 NumtS were validated by merging NumtS nuclear coordinates with HapMap annotations. Our analysis has been carried on eight HapMap individuals (NA18517, NA18507, NA18956, NA19240, NA18555, NA12878, NA19129, NA12156). For each sample, clones with a single best concordant placement (according to the fosmid end-sequence-pair analysis described in Kidd et al., 2008), have been considered. The analysis showed that 541 NumtS (at least 30bp for each one) had been sequenced in such samples.\

\ \

Credits

\

\ These data were provided by Domenico Simone and Marcella Attimonelli at Department of Biochemistry and Molecular Biology "Ernesto Quagliariello" (University of Bari, Italy). Primer designing was carried out by Francesco Calabrese and Giuseppe Mineccia. PCR validation was carried out by Martin Lang, Domenico Simone and Giuseppe Gasparre. Merging with HapMap annotations has been performed by Domenico Simone.\

\ \

References

\ \

\ Kidd JM, Cooper GM, Donahue WF, Hayden HS, Sampas N, Graves T, Hansen N, Teague B, Alkan C,\ Antonacci F et al.\ \ Mapping and sequencing of structural variation from eight human genomes.\ Nature. 2008 May 1;453(7191):56-64.\ PMID: 18451855; PMC: PMC2424287\

\ \

\ Lascaro D, Castellana S, Gasparre G, Romeo G, Saccone C, Attimonelli M.\ \ The RHNumtS compilation: features and bioinformatics approaches to locate and quantify Human\ NumtS.\ BMC Genomics. 2008 Jun 3;9:267.\ PMID: 18522722; PMC: PMC2447851\

\ \

\ Simone D, Calabrese FM, Lang M, Gasparre G, Attimonelli M.\ \ The reference human nuclear mitochondrial sequences compilation validated and implemented on the\ UCSC genome browser.\ BMC Genomics. 2011 Oct 20;12:517.\ PMID: 22013967; PMC: PMC3228558\

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wgEncodeGencodePseudoGeneV19\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV33lift37 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 33lift37 (Ensembl 99) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)\ parent wgEncodeGencodeV33lift37ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV33lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV38lift37 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 38lift37 (Ensembl 104) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 38lift37 (Ensembl 104)\ parent wgEncodeGencodeV38lift37ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV38lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV28lift37 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 28lift37 (Ensembl 92) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)\ parent wgEncodeGencodeV28lift37ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV28lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV44lift37 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 44lift37 (Ensembl 110) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 44lift37 (Ensembl 110)\ parent wgEncodeGencodeV44lift37ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV44lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV34lift37 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 34lift37 (Ensembl 100) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 34lift37 (Ensembl 100)\ parent wgEncodeGencodeV34lift37ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV34lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV24lift37 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 24lift37 (Ensembl 83) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)\ parent wgEncodeGencodeV24lift37ViewGenes off\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV24lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV40lift37 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 40lift37 (Ensembl 106) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 40lift37 (Ensembl 106)\ parent wgEncodeGencodeV40lift37ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV40lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV39lift37 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 39lift37 (Ensembl 105) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 39lift37 (Ensembl 105)\ parent wgEncodeGencodeV39lift37ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV39lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV45lift37 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 45lift37 (Ensembl 111) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 45lift37 (Ensembl 111)\ parent wgEncodeGencodeV45lift37ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV45lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV35lift37 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 35lift37 (Ensembl 101) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 35lift37 (Ensembl 101)\ parent wgEncodeGencodeV35lift37ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV35lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV41lift37 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 41lift37 (Ensembl 107) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 41lift37 (Ensembl 107)\ parent wgEncodeGencodeV41lift37ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV41lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV31lift37 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 31lift37 (Ensembl 97) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)\ parent wgEncodeGencodeV31lift37ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV31lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV46lift37 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 46lift37 (Ensembl 112) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 46lift37 (Ensembl 112)\ parent wgEncodeGencodeV46lift37ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV46lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV36lift37 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 36lift37 (Ensembl 102) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 36lift37 (Ensembl 102)\ parent wgEncodeGencodeV36lift37ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV36lift37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV42lift37 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 42lift37 (Ensembl 108) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 42lift37 (Ensembl 108)\ parent wgEncodeGencodeV42lift37ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV42lift37\ trackHandler wgEncodeGencode\ type genePred\ chainHg38ReMapAxtChain ReMap + axtChain hg38 chain hg38 Lifting: NCBI ReMap alignments to hg38/GRCh38, joined by axtChain 0 3 0 0 0 127 127 127 0 0 0 map 1 chainLinearGap medium\ chainMinScore 3000\ longLabel Lifting: NCBI ReMap alignments to hg38/GRCh38, joined by axtChain\ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91\ matrixHeader A, C, G, T\ otherDb hg38\ parent liftHg38\ priority 3\ shortLabel ReMap + axtChain hg38\ track chainHg38ReMapAxtChain\ type chain hg38\ burgeRnaSeqGemMapperAlignMB435 RNA-seq MB435 bed 12 Burge Lab RNA-seq 32mer Reads from MB-435 Cell Line 1 3 12 12 120 133 133 187 0 0 0 expression 1 longLabel Burge Lab RNA-seq 32mer Reads from MB-435 Cell Line\ parent burgeRnaSeqGemMapperAlignViewAlignments off\ shortLabel RNA-seq MB435\ subGroups view=Alignments tissueType=MB435\ track burgeRnaSeqGemMapperAlignMB435\ gnomadGenomes10XPercentage Sample % > 10X bigWig 0 1 gnomAD Percentage of Genome Samples with at least 10X Coverage 0 3 195 0 60 225 127 157 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.genomes.coverage.depth10.bw\ color 195,0,60\ longLabel gnomAD Percentage of Genome Samples with at least 10X Coverage\ parent gnomadGenomesReadDepthPct on\ priority 3\ shortLabel Sample % > 10X\ subGroups view=gRDepth\ track gnomadGenomes10XPercentage\ gnomadExomes10XPercentage Sample % > 10X bigWig 0 1 gnomAD Percentage of Exome Samples with at least 10X Coverage 0 3 195 0 60 225 127 157 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.exomes.coverage.depth10.bw\ color 195,0,60\ longLabel gnomAD Percentage of Exome Samples with at least 10X Coverage\ parent gnomadExomesReadDepthPct on\ priority 3\ shortLabel Sample % > 10X\ subGroups view=eRDepth\ track gnomadExomes10XPercentage\ uMassBrainHistonePeaksSample Sample-specific bed5FloatScore Sample-specific Brain Histone H3K4me3 from UMMS 3 3 120 12 120 187 133 187 1 0 0 regulation 1 color 120,12,120\ longLabel Sample-specific Brain Histone H3K4me3 from UMMS\ parent uMassBrainHistoneViewPeaks\ shortLabel Sample-specific\ subGroups view=Peaks cellType=norm donor=a_pooled sex=mixed age=d_all\ track uMassBrainHistonePeaksSample\ type bed5FloatScore\ decodeSexAveragedNonCarrier Sex Avg Non-carry bigWig 0.0 113.023 deCODE recombination map, sex-average non-carrier 2 3 252 79 89 253 167 172 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 0 color 252,79,89\ configurable on\ longLabel deCODE recombination map, sex-average non-carrier\ parent avgView off\ priority 3\ shortLabel Sex Avg Non-carry\ subGroups view=avg\ track decodeSexAveragedNonCarrier\ type bigWig 0.0 113.023\ bamSLSid1253 Sid1253 Sequence bam Sid1253 Sequence Reads 0 3 0 0 0 127 127 127 0 0 0 neandertal 1 longLabel Sid1253 Sequence Reads\ parent ntSeqReads\ shortLabel Sid1253 Sequence\ subGroups sample=Sid1253\ track bamSLSid1253\ unipLocSignal Signal Peptide bigBed 12 + UniProt Signal Peptides 1 3 255 0 150 255 127 202 0 0 0 genes 1 bigDataUrl /gbdb/hg19/uniprot/unipLocSignal.bb\ color 255,0,150\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ itemRgb off\ longLabel UniProt Signal Peptides\ parent uniprot\ priority 3\ shortLabel Signal Peptide\ track unipLocSignal\ type bigBed 12 +\ visibility dense\ pubsMarkerSnp SNPs bed 5 SNPs in Publications 1 3 0 0 0 127 127 127 0 0 0 phenDis 1 longLabel SNPs in Publications\ parent pubs on\ priority 3\ shortLabel SNPs\ track pubsMarkerSnp\ type bed 5\ visibility dense\ giabSv Structural Variants bigBed 9 + Genome in a Bottle Structural Variants (dbVar nstd175) 3 3 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/#VariantDetails varRep 1 bigDataUrl /gbdb/hg19/giab/structuralVariants/giabSv.bb\ itemRgb on\ longLabel Genome in a Bottle Structural Variants (dbVar nstd175)\ mouseOverField _mouseOver\ parent svView\ shortLabel Structural Variants\ subGroups view=sv\ track giabSv\ type bigBed 9 +\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/#VariantDetails\ urlLabel dbVar Variant Details:\ urls dbVarUrl="$$"\ covidHgiGwasR4PvalC1 Tested COVID vars bigLolly 9 + Tested COVID risk variants from the COVID-19 HGI GWAS Analyis C1 (11085 cases, 20 studies, Rel 4: Oct 2020) 0 3 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22, varRep 1 bigDataUrl /gbdb/hg19/covidHgiGwas/covidHgiGwasR4.C1.hg19.bb\ longLabel Tested COVID risk variants from the COVID-19 HGI GWAS Analyis C1 (11085 cases, 20 studies, Rel 4: Oct 2020)\ parent covidHgiGwasR4Pval on\ priority 3\ shortLabel Tested COVID vars\ track covidHgiGwasR4PvalC1\ hiSeqDepthTop1Pct Top 0.01 Depth bed 3 Top 0.01 of Read Depth Distribution 0 3 139 69 19 197 162 137 0 0 0 map 1 longLabel Top 0.01 of Read Depth Distribution\ parent hiSeqDepth\ priority 3\ shortLabel Top 0.01 Depth\ track hiSeqDepthTop1Pct\ wgEncodeAffyRnaChipViewFiltTransfrags Transfrags bed 3 RNA Subcellular Localization by Tiling Microarray from ENCODE Affymetrix/CSHL 3 3 0 0 0 127 127 127 0 0 0 expression 1 longLabel RNA Subcellular Localization by Tiling Microarray from ENCODE Affymetrix/CSHL\ minGrayLevel 4\ parent wgEncodeAffyRnaChip\ scoreFilter 0\ scoreFilterLimits 100:1000\ scoreMin 100\ shortLabel Transfrags\ track wgEncodeAffyRnaChipViewFiltTransfrags\ view FiltTransfrags\ visibility pack\ TSS_activity_TPM TSS activity (TPM) bigWig FANTOM5: TSS activity per sample (TPM) 1 3 0 0 0 127 127 127 0 0 0

Description

\

\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\

\ \

Display Conventions and Configuration

\

\ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

\ \

Methods

\

Protocol

\

\ Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE\ (Kanamori-Katyama et al. 2011).\

    \
  • hCAGE
    • \
  • LQhCAGE
    • \
\

\

Samples

\

\ Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\

    \
  • Primary cell
    • \
  • Tissue
    • \
  • Cell Line
    • \
  • Time course
    • \
  • Fractionation
    • \
\

\

TSS peaks and enhancers

\

\ TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They \ are named as "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or\ "p@CHROM:START..END,STRAND" otherwise. The CAGE data is also used to produce an atlas of active, in\ vivo-transcribed enhancers (Andersson et al. 2014). The summary tracks consist of the TSS (CAGE)\ peaks, and summary profiles of TSS activities (total and maximum values). The summary track consists of the\ following tracks.\

    \
  • TSS (CAGE) peaks\
      \
    • the robust peaks
      • \
    \
  • Enhancers
    • \ \
  • TSS summary profiles\
      \
    • Total counts and TPM (tags per million) in all the samples
      • \
    • Maximum counts and TPM among the samples
      • \
    \
    • \
\ \

TSS activity

\

\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag\ starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read\ counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as\ TPM (tags per million).\

\ \
\
Categories of individual samples
\
- Cell Line hCAGE
\
- Cell Line LQhCAGE
\
- fractionation hCAGE
\
- Primary cell hCAGE
\
- Primary cell LQhCAGE
\
- Time course hCAGE
\
- Tissue hCAGE
\
\ \

FANTOM-NET enhancers

\

\ A set of enhancers consist of the ones identified by Andersson et al. 2014 and the ones by Hirabayashi\ et al. 2019

\ \

FANTOM CAT

\

\ FANTOM CAGE associated transcriptome (FANTOM CAT) is a meta-assembly where FANTOM5 CAGE datasets\ were integrated with transcript models from diverse sources. Transcription Initiation Evidence Score\ (TIEScore) is a custom metric that evaluates the properties of a pair of CAGE cluster and transcript\ model to quantify the likelihood that the corresponding CAGE transcription start site (TSS) is\ genuine. TIEScore was first applied to each of the five transcript model collections separately\ and then merged into a non-redundant transcript set. Specifically, the transcript models from\ GENCODEv19 were used as the initial reference to sequentially overlay onto them the transcripts\ from the other four collections, in sequence of Human BodyMap 2.0, miTranscriptome, ENCODE, and\ FANTOM5 RNA-seq assembly. For more details, please refer to Hon et al. 2017.\

\ \

Data Access

\

\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.

\ \

Credits

\

\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.

\ \

References

\

\ Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C,\ Suzuki T et al.\ \ An atlas of active enhancers across human cell types and tissues.\ Nature. 2014 Mar 27;507(7493):455-461.\ PMID: 24670763; PMC: PMC5215096\

\ \

\ FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\ Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\ \ A promoter-level mammalian expression atlas.\ Nature. 2014 Mar 27;507(7493):462-70.\ PMID: 24670764; PMC: PMC4529748\

\ \

\ Hirabayashi S, Bhagat S, Matsuki Y, Takegami Y, Uehata T, Kanemaru A, Itoh M, Shirakawa K, Takaori-\ Kondo A, Takeuchi O et al.\ \ NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements.\ Nat Genet. 2019 Sep;51(9):1369-1379.\ PMID: 31477927\

\ \

\ Hon CC, Ramilowski JA, Harshbarger J, Bertin N, Rackham OJ, Gough J, Denisenko E, Schmeier S,\ Poulsen TM, Severin J et al.\ \ An atlas of human long non-coding RNAs with accurate 5' ends.\ Nature. 2017 Mar 9;543(7644):199-204.\ PMID: 28241135; PMC: PMC6857182\

\ \ \

\ Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\ N, Daub CO et al.\ \ Unamplified cap analysis of gene expression on a single-molecule sequencer.\ Genome Res. 2011 Jul;21(7):1150-9.\ PMID: 21596820; PMC: PMC3129257\

\ \

\ Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\ Ishikawa-Kato S et al.\ \ Gateways to the FANTOM5 promoter level mammalian expression atlas.\ Genome Biol. 2015 Jan 5;16(1):22.\ PMID: 25723102; PMC: PMC4310165\

\ regulation 0 boxedCfg on\ compositeTrack on\ dataVersion FANTOM5 phase2.5\ dimensions dimX=sequenceTech dimY=category dimA=strand\ html fantom5.html\ longLabel FANTOM5: TSS activity per sample (TPM)\ priority 3\ shortLabel TSS activity (TPM)\ showSubtrackColorOnUi off\ sortOrder category=+ sequenceTech=+\ subGroup1 sequenceTech Sequence_Tech hCAGE=hCAGE LQhCAGE=LQhCAGE\ subGroup2 category Category cellLine=cellLine fractionation=fractionation primaryCell=primaryCell tissue=tissue AoSMC_response_to_FGF2=AoSMC_response_to_FGF2_timecourse AoSMC_response_to_IL1b=AoSMC_response_to_IL1b_timecourse ES_to_cardiomyocyte=ES_to_cardiomyocyte_timecourse Embryoid_body_to_melanocyte=Embryoid_body_to_melanocyte_timecourse Epithelial_to_mesenchymal=Epithelial_to_mesenchymal_timecourse Human_iPS_to_neuron_Downs_syndrome_1=Human_iPS_to_neuron_Downs_syndrome_1_timecourse Human_iPS_to_neuron_Downs_syndrome_2=Human_iPS_to_neuron_Downs_syndrome_2_timecourse Human_iPS_to_neuron_wt_1=Human_iPS_to_neuron_wt_1_timecourse Human_iPS_to_neuron_wt_2=Human_iPS_to_neuron_wt_2_timecourse Lymphatic_EC_response_to_VEGFC=Lymphatic_EC_response_to_VEGFC_timecourse MCF7_response_to_EGF=MCF7_response_to_EGF_timecourse MCF7_response_to_HRG=MCF7_response_to_HRG_timecourse MSC_to_adipocyte_human=MSC_to_adipocyte_human_timecourse Macrophage_influenza_infection=Macrophage_influenza_infection_timecourse Macrophage_response_to_LPS=Macrophage_response_to_LPS_timecourse Myoblast_to_myotube_wt_and_DMD=Myoblast_to_myotube_wt_and_DMD_timecourse Preadipocyte_to_adipocyte=Preadipocyte_to_adipocyte_timecourse Rinderpest_infection_series=Rinderpest_infection_series_timecourse Saos_calcification=Saos_calcification_timecourse timecourse=other_samples_in_timecourse\ subGroup3 strand Strand forward=forward reverse=reverse\ superTrack fantom5\ track TSS_activity_TPM\ type bigWig\ visibility dense\ wgEncodeOpenChromSynth Open Chrom Synth bed 9 + DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom(Duke/UNC/UTA) 1 3.6 0 0 0 127 127 127 0 0 0 \ \

Description

\

These tracks display a synthesis of evidence from different assays\ as part of the four Open Chromatin track sets.\ This track displays open chromatin regions and/or transcription factor binding\ sites identified in\ multiple cell types\ by one or more complementary methodologies: DNaseI hypersensitivity (HS)\ (Duke DNaseI HS),\ Formaldehyde-Assisted Isolation of Regulatory Elements (FAIRE)\ (UNC FAIRE),\ and chromatin immunoprecipitation (ChIP) for select regulatory factors\ (UTA TFBS).\ Each methodology was performed on the same cell type using identical growth\ conditions. (Note: Data for some or all ChIP experiments may not be available\ for all cell types). Regions that overlap between methodologies identify\ regulatory elements that are cross-validated indicating high confidence\ regions. In addition, multiple lines of evidence suggest that regions detected\ by a single assay (e.g., DNase-only or FAIRE-only) are also biologically\ relevant (Song et al., submitted).\

DNaseI HS data:\ DNaseI is an enzyme that has long been used to map general\ chromatin accessibility, and DNaseI "hypersensitivity" is a feature of active\ cis-regulatory sequences. The use of this method has led to the discovery of\ functional regulatory elements that include promoters, enhancers, silencers,\ insulators, locus control regions, and novel elements. DNaseI hypersensitivity\ signifies chromatin accessibility following binding of trans-acting factors in\ place of a canonical nucleosome.\

\

FAIRE data:\ FAIRE (Formaldehyde Assisted Isolation of Regulatory\ Elements) is a method to isolate and identify nucleosome-depleted regions of\ the genome. FAIRE was initially discovered in yeast and subsequently shown to\ identify active regulatory elements in human cells (Giresi et al.,\ 2007). Similar to DNaseI HS, FAIRE appears to identify functional regulatory\ elements that include promoters, enhancers, silencers, insulators, locus\ control regions and novel elements.\

\

ChIP data:\ ChIP (Chromatin Immunoprecipitation) is a method to\ identify the specific location of proteins that are directly or indirectly\ bound to genomic DNA. By identifying the binding location of sequence-specific\ transcription factors, general transcription machinery components, and\ chromatin factors, ChIP can help in the functional annotation of the open\ chromatin regions identified by DNaseI HS mapping and FAIRE.\

\

Input data:\ As a background control experiment, the input genomic DNA sample \ that was used for ChIP was sequenced. Crosslinked chromatin\ is sheared and the crosslinks are reversed without carrying out the\ immunoprecipitation step. This sample is otherwise processed in a manner\ identical to the ChIP sample as described below. The input track is\ useful in revealing potential artifacts arising from the sequence\ alignment process such as copy number differences between the\ reference genome and the sequenced samples, as well as regions of\ poor sequence alignability.

\ \

Display Conventions and Configuration

\

This track contains multiple subtracks representing different cell types\ that display individually on the browser. Instructions for configuring tracks\ with multiple subtracks are\ here.\

To facilitate analyses, each region has been assigned an Open Chromatin Code (OC Code),\ based on the assay(s) by which it was detected, and a color, based on its level of validation\ (which was determined by the combination of its OC Code and its statistical significance):\

\
Validated, OC Code = 1:
\
    \
  • Black:\ Regions identified as peaks by both the DNaseI HS assay and FAIRE assay. Peaks\ for DNaseI HS have DNase peak calling p-values < 0.05\ (-log10(p-value) > 1.3) and peaks for FAIRE have FAIRE\ peak calling p-values < 0.1 (-log10(p-value) > 1.0).\
\ \
\
Open Chromatin, OC Code = 2 or 3:
\
    \
  • Blue (high significance):\ Regions not identified as peaks in both DNaseI HS and FAIRE, but for which the\ combination of peak calling p-values from these assays using Fisher's combined\ probability test results in a p-value < 0.01\ (-log10(p-value) > 2).
\ \
\
DNase, OC Code = 2:
\
    \
  • Green (low significance):\ Regions identified by DNaseI HS as peaks (DNase peak calling p-value < 0.05\ (-log10(p-value) > 1.3))\ and not identified by FAIRE as peaks (FAIRE peak calling p-value < 0.1\ (-log10(p-value) > 1.0)),\ and with a Fisher's combined DNaseI HS and FAIRE p-value >= 0.01\ (-log10(p-value) <= 2).
    • \
  • Blue (high significance):\ see Open Chromatin above.
\ \
\
FAIRE, OC Code = 3:
\
    \
  • Dark Red (low significance):\ Regions identified by FAIRE as peaks (FAIRE peak calling p-value < 0.1\ (-log10(p-value) > 1.0))\ and not identified by DNaseI HS as peaks (DNase peak calling p-value < 0.05\ (-log10(p-value) > 1.3)), and with a\ Fisher's combined DNaseI HS and FAIRE p-value >= 0.01\ (-log10(p-value) <= 2).
    • \
  • Blue (high significance):\ see Open Chromatin above.
\ \
\
ChIP-seq, OC Code = 4:
\
    \
  • Pink:\ Regions identified by ChIP-seq as peaks (at least one of the peak calling p-values for\ the three ChIP experiments are < 0.05 (-log10(p-value) > 1.3))\ indicating binding sites for one\ or more of RNA Pol II, CTCF, and c-Myc described here and not identified by DNaseI HS\ or FAIRE as peaks. Peaks for ChIP-seq have p-values < 0.05\ (-log10(p-value) > 1.3). For RNA Pol II, only sites that\ overlap annotated transcription start sites by the UCSC Genes track are considered.\
\ \
\

\

All signal values, -log10(p-values), and the OC Code are\ displayed on the detail page for each element and are available in the\ corresponding bed file.\

\

Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

\ \ \

Methods

\

For each site, the maximum F-Seq Density Signal value has been calculated\ for each assay that was performed in that cell type. F-Seq employs Parzen\ kernel density estimation to create base pair scores (Boyle et al., 2008b).\ Significant regions, or peaks, were determined by fitting the data to a gamma\ distribution to calculate p-values. Contiguous regions where p-values were\ below a 0.05 (DNaseI HS, ChIP) or 0.1 (FAIRE) threshold were considered\ significant. See assay specific description pages \ (Duke DNaseI HS,\ UNC FAIRE and\ UTA TFBS)\ for more details.\ \

A Fisher's Combined P-value for DNaseI HS and FAIRE was calculated using\ Fisher's combined probability test. First, a test statistic is calculated\ using the formula:

\

\ 

    X2 = -2∑loge(pi)
\

\ where pi are the p-values calculated for DNaseI HS\ and FAIRE. X2 follows a chi-squared distribution,\ thus a combined p-value can be assigned to this test statistic.\

\ Enhancer and Insulator Functional assays: A subset of DNaseI and FAIRE\ regions were cloned into functional tissue culture reporter assays to test for\ enhancer and insulator activity. Coordinates and results from these\ experiments can be found\ here.\

\ \

Release Notes

\

\ This is release 2 (Feb 2012) of this track and is based upon these three \ Open Chromatin tracks:\ Duke DNaseI HS,\ UNC FAIRE,\ and\ UTA TFBS.\
\ Release 2 brings in synthesis analysis for 10 samples:
\ Gliobla, GM12891, GM12892, GM18507, GM19239, HeLa-S3/IFNa4h, HTR8svn, Medullo, PanIslets, Urothelia. \

\ \

Credits

\

\ These data and annotations were created by a collaboration of multiple\ institutions (contact:\ \ Terry Furey):\ \

\

\

\ \

References

\ \

\ Bhinge AA, Kim J, Euskirchen GM, Snyder M, Iyer VR.\ \ Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE).\ Genome Res. 2007 Jun;17(6):910-6.\

\ \

\ Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE et al.\ \ Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.\ Nature. 2007 Jun 14;447(7146):799-816.\

\ \

\ Boyle AP, Davis S, Shulha HP, Meltzer P, Margulies EH, Weng Z, Furey TS, Crawford GE.\ \ High-resolution mapping and characterization of open chromatin across the genome.\ Cell. 2008 Jan 25;132(2):311-22.\

\ \

\ Boyle AP, Guinney J, Crawford GE, Furey TS.\ \ F-Seq: a feature density estimator for high-throughput sequence tags.\ Bioinformatics. 2008 Nov 1;24(21):2537-8.\

\ \

\ Buck MJ, Nobel AB, Lieb JD.\ \ ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data.\ Genome Biol. 2005;6(11):R97.\

\ \

\ Crawford GE, Davis S, Scacheri PC, Renaud G, Halawi MJ, Erdos MR, Green R, Meltzer PS, Wolfsberg TG, Collins FS.\ \ DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays.\ Nat Methods. 2006 Jul;3(7):503-9.\

\ \

\ Crawford GE, Holt IE, Whittle J, Webb BD, Tai D, Davis S, Margulies EH, Chen Y, Bernat JA, Ginsburg D et al.\ \ Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS).\ Genome Res. 2006 Jan;16(1):123-31.\

\ \

\ Giresi PG, Kim J, McDaniell RM, Iyer VR, Lieb JD.\ \ FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin.\ Genome Res. 2007 Jun;17(6):877-885.\

\ \

\ Giresi PG, Lieb JD.\ \ Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements).\ Methods. 2009 Jul;48(3):233-9.\

\ \

\ Li H, Ruan J, Durbin R.\ \ Mapping short DNA sequencing reads and calling variants using mapping quality scores.\ Genome Res. 2008 Nov;18(11):1851-8.\

\ \

\ Song L, Crawford GE.\ \ DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells.\ Cold Spring Harb Protoc. 2010 Feb;2010(2):pdb.prot5384.\

\ \

Data Release Policy

\ Data users may freely use ENCODE data, but may not, without prior consent,\ submit publications that use an unpublished ENCODE dataset until nine months\ following the release of the dataset. This date is listed in the Restricted\ Until column on the track configuration page and the download page. The\ full data release policy for ENCODE is available here.\ regulation 1 boxedCfg on\ compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell treatment=treatment\ dataVersion ENCODE Mar 2012 Freeze\ dimensions dimensionX=cellType dimensionY=treatment\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line treatment=Treatment dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ filterBy color:Validation_Level=0|Validated_(OC_1){#000000},255|Open_Chromatin_(OC_2-3){#0000FF},39168|DNase_low_(OC_2){#009900},10027008|FAIRE_low_(OC_3){#990000},16711935|ChIP-seq_(OC_4){#FF00FF} ocCode:OC_Code=+1:_Validated_(all),2:_DNase_(all),3:_FAIRE_(all),4:_ChIP_(all)\ group regulation\ html wgEncodeOpenChromSynth.release2\ itemRgb on\ longLabel DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom(Duke/UNC/UTA)\ noScoreFilter .\ pValueFilter 0.0\ pValueFilterLimits 0:16\ priority 3.6\ shortLabel Open Chrom Synth\ sortOrder cellType=+ treatment=+\ subGroup1 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t3GLIOBLA=Gliobla t3GM12891=GM12891 t3GM12892=GM12892 t3GM18507=GM18507 t3GM19239=GM19239 t3HTR8SVN=HTR8svn t3MEDULLO=Medullo t3NHEK=NHEK t3PANISLETS=PanIslets\ subGroup2 treatment Treatment aNone=None IFNA4H=IFNa4h UT189=UT189\ superTrack wgEncodeDNAseSuper dense\ track wgEncodeOpenChromSynth\ type bed 9 +\ netMonDom5 Opossum Net netAlign monDom5 chainMonDom5 Opossum (Oct. 2006 (Broad/monDom5)) Alignment Net 1 4 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Opossum (Oct. 2006 (Broad/monDom5)) Alignment Net\ otherDb monDom5\ parent vertebrateChainNetViewnet on\ shortLabel Opossum Net\ subGroups view=net species=s003 clade=c00\ track netMonDom5\ type netAlign monDom5 chainMonDom5\ netGorGor3 Gorilla Net netAlign gorGor3 chainGorGor3 Gorilla (May 2011 (gorGor3.1/gorGor3)) Alignment Net 1 4 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Gorilla (May 2011 (gorGor3.1/gorGor3)) Alignment Net\ otherDb gorGor3\ parent primateChainNetViewnet off\ shortLabel Gorilla Net\ subGroups view=net species=s011 clade=c00\ track netGorGor3\ type netAlign gorGor3 chainGorGor3\ netCriGri1 Chinese hamster Net netAlign criGri1 chainCriGri1 Chinese hamster (Jul. 2013 (C_griseus_v1.0/criGri1)) Alignment Net 1 4 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Chinese hamster (Jul. 2013 (C_griseus_v1.0/criGri1)) Alignment Net\ otherDb criGri1\ parent placentalChainNetViewnet off\ shortLabel Chinese hamster Net\ subGroups view=net species=s003 clade=c00\ track netCriGri1\ type netAlign criGri1 chainCriGri1\ phyloP100wayAll 100 Vert. Cons wig -20 7.532 100 vertebrates Basewise Conservation by PhyloP 2 4 60 60 140 140 60 60 0 0 0 compGeno 0 altColor 140,60,60\ autoScale off\ color 60,60,140\ configurable on\ logoMaf multiz100way\ longLabel 100 vertebrates Basewise Conservation by PhyloP\ maxHeightPixels 100:50:11\ noInherit on\ parent cons100wayViewphyloP on\ priority 4\ shortLabel 100 Vert. Cons\ spanList 1\ subGroups view=phyloP clade=all\ track phyloP100wayAll\ type wig -20 7.532\ viewLimits -4.5:4.88\ windowingFunction mean\ wgEncodeGencode2wayConsPseudoV7 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from ENCODE/GENCODE Version 7 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from ENCODE/GENCODE Version 7\ parent wgEncodeGencodeV7View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV7\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV14 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from ENCODE/GENCODE Version 14 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from ENCODE/GENCODE Version 14\ parent wgEncodeGencodeV14View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV14\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV17 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from ENCODE/GENCODE Version 17 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from ENCODE/GENCODE Version 17\ parent wgEncodeGencodeV17View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV17\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV19 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 19 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 19\ parent wgEncodeGencodeV19View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV19\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeUwAffyExonArrayA549SimpleSignalRep1 A549 1 broadPeak A549 Exon array Signal Rep 1 from ENCODE/UW 0 4 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel A549 1\ subGroups cellType=t2A549 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayA549SimpleSignalRep1\ type broadPeak\ encTfChipPkENCFF744DTQ A549 CBX8 narrowPeak Transcription Factor ChIP-seq Peaks of CBX8 in A549 from ENCODE 3 (ENCFF744DTQ) 1 4 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CBX8 in A549 from ENCODE 3 (ENCFF744DTQ)\ parent encTfChipPk off\ shortLabel A549 CBX8\ subGroups cellType=A549 factor=CBX8\ track encTfChipPkENCFF744DTQ\ wgEncodeHaibRnaSeqA549Dex100nmAlnRep2 A549 DEX100nM 2 bam A549 DEX 1 hr 100 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 4 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 DEX 1 hr 100 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel A549 DEX100nM 2\ subGroups view=Alignments cellType=t2A549 treatment=DEX100NM rep=rep2\ track wgEncodeHaibRnaSeqA549Dex100nmAlnRep2\ type bam\ wgEncodeHaibMethyl450A549Etoh02SitesRep1 A549 ETOH bed 9 A549 EtOH Methylation 450K Bead Array from ENCODE/HAIB 1 4 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 EtOH Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel A549 ETOH\ subGroups cellType=t2A549 obtainedBy=HAIB treatment=ETOH02\ track wgEncodeHaibMethyl450A549Etoh02SitesRep1\ type bed 9\ snpArrayAffy250Nsp Affy 250KNsp bed 6 + Affymetrix GeneChip Human Mapping 250K Nsp 0 4 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Affymetrix GeneChip Human Mapping 250K Nsp\ parent genotypeArrays off\ priority 4\ shortLabel Affy 250KNsp\ track snpArrayAffy250Nsp\ type bed 6 +\ affyU95 Affy U95 psl . Alignments of Affymetrix Consensus/Exemplars from HG-U95 0 4 0 0 0 127 127 127 0 0 0

Description

\

\ This track shows the location of the consensus and exemplar sequences used \ for the selection of probes on the Affymetrix HG-U95Av2 chip. For this chip, \ probes are predominantly designed from consensus sequences.

\ \

Methods

\

\ Consensus and exemplar sequences were downloaded from the\ Affymetrix Product Support\ and mapped to the genome using blat followed by pslReps with the \ parameters: 

   -minCover=0.3 -minAli=0.95 -nearTop=0.005\

\ \

Credits

\

\ Thanks to Affymetrix for the data underlying this track.

\ expression 1 group expression\ html ../affyU95\ longLabel Alignments of Affymetrix Consensus/Exemplars from HG-U95\ parent affyArchive\ priority 4\ shortLabel Affy U95\ track affyU95\ type psl .\ visibility hide\ covidHgiGwasR4PvalC2 All COVID vars bigLolly 9 + COVID risk variants from the COVID-19 HGI GWAS Analysis C2 (17965 cases, 33 studies, Rel 4: Oct 2020) 0 4 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22, varRep 1 bigDataUrl /gbdb/hg19/covidHgiGwas/covidHgiGwasR4.C2.hg19.bb\ longLabel COVID risk variants from the COVID-19 HGI GWAS Analysis C2 (17965 cases, 33 studies, Rel 4: Oct 2020)\ parent covidHgiGwasR4Pval on\ priority 4\ shortLabel All COVID vars\ track covidHgiGwasR4PvalC2\ dbSnp153 All dbSNP(153) bigDbSnp All Short Genetic Variants from dbSNP Release 153 1 4 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg19/snp/dbSnp153.bb\ defaultGeneTracks knownGene\ longLabel All Short Genetic Variants from dbSNP Release 153\ maxWindowToDraw 1000000\ parent dbSnp153ViewVariants off\ priority 4\ shortLabel All dbSNP(153)\ subGroups view=variants\ track dbSnp153\ dbSnp155 All dbSNP(155) bigDbSnp All Short Genetic Variants from dbSNP Release 155 1 4 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg19/snp/dbSnp155.bb\ defaultGeneTracks knownGene\ longLabel All Short Genetic Variants from dbSNP Release 155\ maxWindowToDraw 1000000\ parent dbSnp155ViewVariants off\ priority 4\ shortLabel All dbSNP(155)\ subGroups view=variants\ track dbSnp155\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_ctss_rev AorticSmsToFgf2_00hr00minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_reverse 0 4 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep2%20%28LK2%29.CNhs13358.12740-135I4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12740-135I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_tpm_rev AorticSmsToFgf2_00hr00minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_reverse 1 4 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep2%20%28LK2%29.CNhs13358.12740-135I4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12740-135I4 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToFgf2_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4\ urlLabel FANTOM5 Details:\ gtexEqtlTissueArteryAorta arteryAorta bed 9 + Expression QTL in Artery_Aorta from GTEx V6 0 4 139 28 98 197 141 176 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 139,28,98\ idInUrlSql select gene from gtexEqtlTissueArteryAorta where name='%s'\ longLabel Expression QTL in Artery_Aorta from GTEx V6\ parent gtexEqtlTissue on\ shortLabel arteryAorta\ track gtexEqtlTissueArteryAorta\ iscaBenignLossCum Benign Loss bedGraph 4 ClinGen CNVs: Benign Loss Coverage 2 4 200 0 0 227 127 127 0 0 0 phenDis 0 color 200,0,0\ longLabel ClinGen CNVs: Benign Loss Coverage\ parent iscaViewTotal\ shortLabel Benign Loss\ subGroups view=cov class=ben level=sub\ track iscaBenignLossCum\ lincRNAsCTBrain_R Brain_R bed 5 + lincRNAs from brain_r 1 4 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from brain_r\ parent lincRNAsAllCellType on\ shortLabel Brain_R\ subGroups view=lincRNAsRefseqExp tissueType=brain_r\ track lincRNAsCTBrain_R\ dhcHumDerDenAncCcdsFrameshiftCodingFixed CC FrShft Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: CCDS Frameshift Coding 3 4 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: CCDS Frameshift Coding\ parent dhcHumDerDenAncCcds\ shortLabel CC FrShft Fxd\ subGroups view=Ccds subset=CcdsFrameshiftCoding freq=Fixed\ track dhcHumDerDenAncCcdsFrameshiftCodingFixed\ wgEncodeCrgMapabilityAlign50mer CRG Align 50 bigWig 0.00 1.00 Alignability of 50mers by GEM from ENCODE/CRG(Guigo) 0 4 0 100 0 127 177 127 0 0 0 map 1 color 0,100,0\ longLabel Alignability of 50mers by GEM from ENCODE/CRG(Guigo)\ origAssembly hg19\ parent wgEncodeMapabilityViewCRGMAP off\ shortLabel CRG Align 50\ subGroups view=CRGMAP win=w050 lab=CRG\ track wgEncodeCrgMapabilityAlign50mer\ type bigWig 0.00 1.00\ dbVar_common_decipher dbVar Curated DECIPHER SVs bigBed 9 + . NCBI dbVar Curated Common SVs: all populations from DECIPHER 3 4 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg19/bbi/dbVar/common_decipher.bb\ longLabel NCBI dbVar Curated Common SVs: all populations from DECIPHER\ parent dbVar_common on\ shortLabel dbVar Curated DECIPHER SVs\ track dbVar_common_decipher\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ evoCpg Evo Cpg bed 9 . Weizmann Evolutionary CpG Islands 0 4 0 0 0 127 127 127 0 0 0

Description

\

\ Evolutionary analysis of CpG-rich regions reveals that several distinct processes generate and maintain CpG islands. One central evolutionary regime resulting in enriched CpG content is driven by low levels of DNA methylation and consequentially low rates of deamination (C → T). Another major force forming CpG islands is biased gene conversion, which stabilizes constitutively methylated CpG islands by balancing rapid deamination with G/C fixation, indirectly increasing the CpG frequency. This track classifies contiguous CpG rich regions according to their inferred evolutionary dynamics. Analysis of different epigenetic marks (DNA methylation and others) should usually be performed separately for the different evolutionary classes. \

Display Conventions

\ The track shows contiguous (100bp or more) genomic elements with CpG content greater than 3%, color-coded according to their classification of evolutionary dynamics. Green elements represent CpG islands that have low rates of C→T deamination and are typically unmethylated. Red elements represent CpG rich regions that gain G/C quickly and are in many cases constitutively methylated. Blue elements represent CpG rich loci that overlap exons (where stabilization of CpGs can be explained by indirect selective pressure on coding sequence). A probabilistic score for each CpG island indicates the specificity of the evolutionary behavior; positive values indicate hypo-deamination and negative values indicate high rates of G/C gain.The intensity of the CpG island classification score is also represented in the shade of the CpG island element (shades of green for hypodeaminated elements, and shades of red for constitutively methylated islands).\

Note: CpG islands in chromosomes X and Y and islands that cannot be aligned to other primate genomes are currently ignored.\

Methods

\ A parameter-rich evolutionary model was used to infer substitution dynamics over genomic bins of 50bp and clustering analysis identified two major types of genomic behaviors (as described in Mendelson Cohen, Kenigsberg and Tanay, Cell 2011). The distributions of evolutionary parameters in each cluster (Figure 3 in the paper) were used to compute a log-odds score for each 50bp genomic bin. Bins with CpG content higher than 3% (smoothed over 500bp) were then assembled into contiguous segments as follows:\
    \
  1. Adjacent bins from the same cluster were merged.\
  2. Ambiguously classified bins were merged with any adjacent non-ambiguous bins. \
  3. Bins of the same class with gaps of up to 50bp were merged. Short intervals (<200bp) at a distance less than 100bp were also merged.\
  4. Intervals shorter than 100bp were discarded.\
  5. All merged intervals were reclassified according to the mean log-odds score spanning the entire interval.\
\ \ The Evo CpG data of hg18 was lifted to hg19 by Weizmann Institute of Science.\

\ The raw inferred evolutionary statistics and cluster distributions are available upon request (amos.tanay@weizmann.ac.il)\

Credits

\ Thanks to \ \ Amos Tanay's lab\ at the Weizmann Institute of Science for the evolutionary model and classification scheme.\

References

\

\ Cohen NM, Kenigsberg E, Tanay A.\ \ Primate CpG islands are maintained by heterogeneous evolutionary regimes involving minimal\ selection.\ Cell. 2011 May 27;145(5):773-86.\ PMID: 21620139\

\ compGeno 1 color 0,0,0\ group compGeno\ itemRgb on\ longLabel Weizmann Evolutionary CpG Islands\ noScoreFilter .\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ priority 4\ shortLabel Evo Cpg\ track evoCpg\ type bed 9 .\ visibility hide\ affyExonProbeExtended Extended Probes bed 10 Affymetrix Human Exon Array Extended Probes 1 4 139 69 19 197 162 137 0 0 0 expression 1 color 139,69,19\ longLabel Affymetrix Human Exon Array Extended Probes\ parent affyExonProbe off\ shortLabel Extended Probes\ subGroups view=v2Probe level=L2Extended\ track affyExonProbeExtended\ type bed 10\ unipLocExtra Extracellular bigBed 12 + UniProt Extracellular Domain 1 4 0 150 255 127 202 255 0 0 0 genes 1 bigDataUrl /gbdb/hg19/uniprot/unipLocExtra.bb\ color 0,150,255\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ itemRgb off\ longLabel UniProt Extracellular Domain\ parent uniprot\ priority 4\ shortLabel Extracellular\ track unipLocExtra\ type bigBed 12 +\ visibility dense\ decodeFemale Female bigWig 0.0 90.808 deCODE recombination map, female 0 4 200 60 200 227 157 227 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 0 color 200,60,200\ configurable on\ longLabel deCODE recombination map, female\ parent femaleView\ priority 4\ shortLabel Female\ subGroups view=female\ track decodeFemale\ type bigWig 0.0 90.808\ geneHancerClusteredInteractionsDoubleElite GH Clusters (DE) bigInteract Clustered interactions of GeneHancer regulatory elements and genes (Double Elite) 3 4 0 0 0 127 127 127 0 0 0 https://www.genecards.org/cgi-bin/carddisp.pl?gene=$&keywords=$&prefilter=enhancers#enhancers regulation 1 bigDataUrl /gbdb/hg19/geneHancer/geneHancerInteractionsDoubleElite.v2.hg19.bb\ longLabel Clustered interactions of GeneHancer regulatory elements and genes (Double Elite)\ parent ghClusteredInteraction on\ shortLabel GH Clusters (DE)\ subGroups set=a_ELITE view=d_I\ track geneHancerClusteredInteractionsDoubleElite\ urlLabel Interaction in GeneCards\ wgEncodeGisRnaPetGm12878CytosolPapAlnRep1V2 GM12 cyto pA+ A 1 bam GM12878 cytosol polyA+ clone-based RNA PET Alignments Rep 1 from ENCODE/GIS 0 4 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA+ clone-based RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel GM12 cyto pA+ A 1\ subGroups view=v3Alignments cellType=aGM12878 cloned=Based localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetGm12878CytosolPapAlnRep1V2\ type bam\ wgEncodeAwgTfbsHaibGm12878Bcl11aPcr1xUniPk GM12878 BCL11A narrowPeak GM12878 TFBS Uniform Peaks of BCL11A from ENCODE/HudsonAlpha/Analysis 1 4 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of BCL11A from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 BCL11A\ subGroups tier=a10 cellType=a10GM12878 factor=BCL11A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Bcl11aPcr1xUniPk\ wgEncodeOpenChromChipGm12878CtcfPkRep1 GM12878 CTCF Pk narrowPeak GM12878 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 4 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks\ shortLabel GM12878 CTCF Pk\ subGroups treatment=AANONE view=Peaks factor=CTCF cellType=t1GM12878\ track wgEncodeOpenChromChipGm12878CtcfPkRep1\ type narrowPeak\ wgEncodeUncBsuProtGencGm12878CytosolIngelmPepMapGcFt GM12878 Cyt PTM bigBed 12 GM12878 Cytosol InGel ProtG GENCODE11 Hg19 PTM Mapping from ENCODE/UNC/BSU 2 4 153 38 0 204 146 127 1 0 0 expression 1 color 153,38,0\ longLabel GM12878 Cytosol InGel ProtG GENCODE11 Hg19 PTM Mapping from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtGencViewmPepMapGcFt\ shortLabel GM12878 Cyt PTM\ subGroups view=mPepMapGcFt cellType=GM12878 localization=CYTOSOL protocol=INGEL\ track wgEncodeUncBsuProtGencGm12878CytosolIngelmPepMapGcFt\ type bigBed 12\ wgEncodeSunyRipSeqGm12878Elavl1SigRep1 GM12878 ELAVL1 1 bigWig 0.000000 53896.902344 GM12878 ELAVL1 RIP-seq Signal Rep 1 from ENCODE/SUNY 2 4 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ELAVL1 RIP-seq Signal Rep 1 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewSignal off\ shortLabel GM12878 ELAVL1 1\ subGroups view=Signal factor=ELAVL1 cellType=t1GM12878 rep=rep1\ track wgEncodeSunyRipSeqGm12878Elavl1SigRep1\ type bigWig 0.000000 53896.902344\ wgEncodeBroadHistoneGm12878Ezh239875Sig GM12878 EZH2 bigWig 0.040000 20211.199219 GM12878 EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 4 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel GM12878 EZH2\ subGroups view=Signal factor=EZH239875 cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878Ezh239875Sig\ type bigWig 0.040000 20211.199219\ wgEncodeUwDnaseGm12878HotspotsRep2 GM12878 Ht 2 broadPeak GM12878 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 4 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot\ shortLabel GM12878 Ht 2\ subGroups view=Hot cellType=t1GM12878 rep=rep2 treatment=None\ track wgEncodeUwDnaseGm12878HotspotsRep2\ type broadPeak\ wgEncodeSunyAlbanyTilingGm12878RipinputRbpAssocRna GM12878 Input broadPeak GM12878 Input RBP Associated RNA by Tiling Array from ENCODE/SUNY 3 4 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Input RBP Associated RNA by Tiling Array from ENCODE/SUNY\ parent wgEncodeSunyAlbanyTilingView\ shortLabel GM12878 Input\ subGroups view=RbpAssocRna cellType=t1GM12878 antibody=ripInput\ track wgEncodeSunyAlbanyTilingGm12878RipinputRbpAssocRna\ type broadPeak\ wgEncodeAffyRnaChipFiltTransfragsGm12878NucleusLongnonpolya GM12878 nucl pA- broadPeak GM12878 nucleus polyA- Microarray Transfrags from ENCODE Affy/CSHL 3 4 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleus polyA- Microarray Transfrags from ENCODE Affy/CSHL\ parent wgEncodeAffyRnaChipViewFiltTransfrags\ shortLabel GM12878 nucl pA-\ subGroups view=FiltTransfrags cellType=t1GM12878 localization=dNUCLEUS rnaExtract=longNonPolyA\ track wgEncodeAffyRnaChipFiltTransfragsGm12878NucleusLongnonpolya\ type broadPeak\ wgEncodeSunyAlbanyGeneStGm12878Pabpc1RbpAssocRnaV2 GM12878 PABPC1 broadPeak GM12878 PABPC1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 4 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 PABPC1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt\ shortLabel GM12878 PABPC1\ subGroups cellType=t1GM12878 factor=PABPC1\ track wgEncodeSunyAlbanyGeneStGm12878Pabpc1RbpAssocRnaV2\ type broadPeak\ wgEncodeUwRepliSeqGm12878S3PctSignalRep1 GM12878 S3 1 bigWig 1.000000 100.000000 GM12878 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 4 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel GM12878 S3 1\ subGroups view=v1PctSignal cellType=t1GM12878 phase=p4S3 rep=rep1\ track wgEncodeUwRepliSeqGm12878S3PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeCaltechRnaSeqGm12878R2x75Th1014Il200SigRep2V4 GM78 2x75 Sg 2 bigWig 0.020000 440994.250000 GM12878 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech 2 4 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal\ shortLabel GM78 2x75 Sg 2\ subGroups view=Signal cellType=t1GM12878 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12878R2x75Th1014Il200SigRep2V4\ type bigWig 0.020000 440994.250000\ wgEncodeHaibTfbsGm12878Atf2sc81188V0422111RawRep2 GM78 ATF2 V11 2 bigWig 0.142408 126.814003 GM12878 ATF2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 4 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ATF2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 ATF2 V11 2\ subGroups view=RawSignal factor=ATF2SC81188 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Atf2sc81188V0422111RawRep2\ type bigWig 0.142408 126.814003\ wgEncodeSydhTfbsGm12878Brca1a300IggmusSig GM78 BRC1 IgM bigWig 1.000000 12366.000000 GM12878 BRCA1 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 4 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 BRCA1 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 BRC1 IgM\ subGroups view=Signal factor=BRCA1A300 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Brca1a300IggmusSig\ type bigWig 1.000000 12366.000000\ wgEncodeCshlLongRnaSeqGm12878CellPamJunctions GM78 cel pA- J bed 6 + GM12878 whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 4 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel GM78 cel pA- J\ subGroups view=Junctions cellType=t1GM12878 localization=CELL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqGm12878CellPamJunctions\ type bed 6 +\ wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapPlusRawRep1 GM78 cell TAP + 1 bigWig 1.000000 1639543.000000 GM12878 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 4 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal on\ shortLabel GM78 cell TAP + 1\ subGroups view=PlusSignal cellType=t1GM12878 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapPlusRawRep1\ type bigWig 1.000000 1639543.000000\ wgEncodeUwTfbsGm12878CtcfStdHotspotsRep2 GM78 CTCF Ht 2 broadPeak GM12878 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 4 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot on\ shortLabel GM78 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t1GM12878 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12878CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeRikenCageGm12878CytosolPamAln GM78 cyto pA- A 1 bam GM12878 cytosol polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN 0 4 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel GM78 cyto pA- A 1\ subGroups view=Alignments cellType=t1GM12878 localization=cytosol rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageGm12878CytosolPamAln\ type bam\ wgEncodeUwHistoneGm12878H3k4me3StdHotspotsRep2 GM78 H3K4M3 Ht 2 broadPeak GM12878 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 4 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot on\ shortLabel GM78 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t1GM12878 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm12878H3k4me3StdHotspotsRep2\ type broadPeak\ HInvGeneMrna H-Inv psl . H-Invitational Genes mRNA Alignments 0 4 0 100 100 127 177 177 0 0 0

Description

\

\ This track shows alignments of full-length cDNAs that were used as the basis \ of the H-Invitational Gene Database (HInv-DB). \ The HInv-DB is a human gene database containing human-curated annotation of \ 41,118 full-length cDNA clones representing 21,037 cDNA clusters.\ The project was initiated in 2002 and the database became publicly\ available in April 2004.

\

\ HInv-DB entries describe the following entities:\

    \
  • gene structures\
  • functions\
  • novel alternative splicing isoforms\
  • non-coding functional RNAs\
  • functional domains\
  • sub-cellular localizations\
  • metabolic pathways\
  • predictions of protein 3D structure\
  • mapping of SNPs and microsatellite repeat motifs in relation with orphan \ diseases\
  • gene expression profiling\
  • comparative results with mouse full-length cDNAs gene structures\

\ \

Methods

\

\ To cluster redundant cDNAs and alternative splicing variants within the H-Inv \ cDNAs, a total of 41,118 H-Inv cDNAs were mapped to the human genome using \ the mapping pipeline developed by the Japan Biological Information Research\ Center (JBIRC). The mapping yielded 40,140 cDNAs that \ were aligned against the genome using the stringent criteria of at least 95% \ identity and 90% length coverage. These 40,140 cDNAs were clustered to 20,190 \ loci, resulting in an average of 2.0 cDNAs per locus. For the remaining 978 \ unmapped cDNAs, cDNA-based clustering was applied, yielding 847 clusters. \ In total, 21,037 clusters (20,190 mapped and 847 unmapped) were identified \ and integrated into H-InvDB. H-Inv cluster IDs (e.g. HIX0000001) were\ assigned to these clusters. A representative sequence was selected from each \ cluster and used for further analyses and annotation.

\

\ A full description of the construction of the HInv-DB is contained in the \ report by the H-Inv Consortium (see References section).

\ \

Credits

\

\ The H-InvDB is hosted at the JBIRC.\ The human-curated annotations were produced during invitational annotation\ meetings held in Japan during the summer of 2002, with a follow-up\ meeting in November 2004. Participants included 158 scientists \ representing 67 institutions from 12 countries.

\

\ The full-length cDNA clones and sequences were produced by the\ Chinese National Human Genome Center (CHGC), \ the Deutsches Krebsforschungszentrum (DKFZ/MIPS), \ Helix Research Institute, Inc. (HRI), \ the Institute of Medical Science in the University of Tokyo (IMSUT), \ the Kazusa DNA Research Institute (KDRI), \ the Mammalian Gene Collection (MGC/NIH) and the\ Full-Length Long Japan (FLJ) project.

\ \

References

\

\ Imanishi T, Itoh T, Suzuki Y, O'Donovan C, Fukuchi S, Koyanagi KO, Barrero RA, Tamura T, Yamaguchi-\ Kabata Y, Tanino M et al.\ Integrative annotation of 21,037 human genes validated by full-length cDNA\ clones. PLoS Biol. 2004 Jun;2(6):e162.\ PMID: 15103394; PMC: PMC393292\

\ rna 1 color 0,100,100\ group rna\ longLabel H-Invitational Genes mRNA Alignments\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ priority 4\ shortLabel H-Inv\ track HInvGeneMrna\ type psl .\ visibility hide\ wgEncodeDukeAffyExonH1hescSimpleSignalRep1V2 H1-hESC 1 bigBed 6 + H1-hESC Exon array Signal Rep 1 from ENCODE/Duke 0 4 0 107 27 127 181 141 1 0 0 expression 1 color 0,107,27\ longLabel H1-hESC Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon\ shortLabel H1-hESC 1\ subGroups cellType=t1H1HESC treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonH1hescSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeHaibMethylRrbsH1hescHaibSitesRep2 H1-hESC 2 bed 9 + H1-hESC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 4 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel H1-hESC 2\ subGroups cellType=t1H1HESC obtainedBy=HAIB treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsH1hescHaibSitesRep2\ type bed 9 +\ wgEncodeAwgSegmentationChromhmmH1hesc H1-hESC ChromHMM bed 9 . H1-hESC Genome Segmentation by ChromHMM from ENCODE/Analysis 0 4 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H1-hESC Genome Segmentation by ChromHMM from ENCODE/Analysis\ parent wgEncodeAwgSegmentation off\ shortLabel H1-hESC ChromHMM\ subGroups tier=t1 cellType=t1H1HESC method=ChromHMM\ track wgEncodeAwgSegmentationChromhmmH1hesc\ type bed 9 .\ wgEncodeOpenChromFaireH1hescPk H1-hESC FAIRE Pk narrowPeak H1-hESC FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 4 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks\ shortLabel H1-hESC FAIRE Pk\ subGroups view=Peaks cellType=t1H1HESC treatment=AANONE\ track wgEncodeOpenChromFaireH1hescPk\ type narrowPeak\ wgEncodeGisRnaSeqH1hescCellPapAlnRep1 H1ES cell pA+ 1 bam H1-hESC polyA+ RNA-seq Alignments rep 1 from ENCODE/GIS 1 4 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC polyA+ RNA-seq Alignments rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaSeqViewAlignments on\ shortLabel H1ES cell pA+ 1\ subGroups view=Alignments cellType=t1H1HESC rnaExtract=longPolyA rep=rep1 localization=cell\ track wgEncodeGisRnaSeqH1hescCellPapAlnRep1\ type bam\ wgEncodeOpenChromDnaseH1hescPk H1hESC Pk narrowPeak H1-hESC DNaseI HS Peaks from ENCODE/Duke 3 4 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks\ shortLabel H1hESC Pk\ subGroups view=Peaks cellType=t1H1HESC treatment=zNONE\ track wgEncodeOpenChromDnaseH1hescPk\ type narrowPeak\ hapmapSnpsCHD HapMap SNPs CHD bed 6 + HapMap SNPs from the CHD Population (Chinese Ancestry in Metropolitan Denver, CO, US) 0 4 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HapMap SNPs from the CHD Population (Chinese Ancestry in Metropolitan Denver, CO, US)\ parent hapmapSnps\ priority 4\ shortLabel HapMap SNPs CHD\ track hapmapSnpsCHD\ wgEncodeFsuRepliChipHelas3WaveSignalRep1 HeLa-S3 1 bigWig -6.303239 1.678583 HeLa-S3 Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU 0 4 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU\ parent wgEncodeFsuRepliChip\ shortLabel HeLa-S3 1\ subGroups view=WaveSignal cellType=t2HELAS3 rep=rep1\ track wgEncodeFsuRepliChipHelas3WaveSignalRep1\ type bigWig -6.303239 1.678583\ wgEncodeUmassDekker5CHelas3PkV2 HeLa-S3 Pk bed 12 HeLa-S3 5C Peaks from ENCODE/UMass-Dekker 0 4 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 5C Peaks from ENCODE/UMass-Dekker\ parent wgEncodeUmassDekker5C\ shortLabel HeLa-S3 Pk\ subGroups cellType=t2HELAS3 region=NONE\ track wgEncodeUmassDekker5CHelas3PkV2\ type bed 12\ wgEncodeOpenChromSynthHelas3Ifna4hPk HeLa-S3 Syn Pk bed 9 + HeLa-S3 IFNa4h DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom 0 4 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 IFNa4h DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom\ origAssembly hg19\ parent wgEncodeOpenChromSynth off\ shortLabel HeLa-S3 Syn Pk\ subGroups cellType=t2HELAS3 treatment=IFNA4H\ track wgEncodeOpenChromSynthHelas3Ifna4hPk\ type bed 9 +\ wgEncodeRegTxnCaltechRnaSeqHepg2R2x75Il200SigPooled HepG2 bigWig 0 65535 Transcription of HepG2 cells from ENCODE 0 4 128 255 149 191 255 202 0 0 0 regulation 1 color 128,255,149\ longLabel Transcription of HepG2 cells from ENCODE\ parent wgEncodeRegTxn\ priority 4\ shortLabel HepG2\ track wgEncodeRegTxnCaltechRnaSeqHepg2R2x75Il200SigPooled\ type bigWig 0 65535\ wgEncodeBroadHmmHepg2HMM HepG2 ChromHMM bed 9 . HepG2 Chromatin State Segmentation by HMM from ENCODE/Broad 0 4 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HepG2 Chromatin State Segmentation by HMM from ENCODE/Broad\ origAssembly hg18\ parent wgEncodeBroadHmm\ shortLabel HepG2 ChromHMM\ subGroups cellType=t2HEPG2\ track wgEncodeBroadHmmHepg2HMM\ type bed 9 .\ wgEncodeRegMarkH3k4me1Huvec HUVEC bigWig 0 4666 H3K4Me1 Mark (Often Found Near Regulatory Elements) on HUVEC Cells from ENCODE 0 4 128 212 255 191 233 255 0 0 0 regulation 1 color 128,212,255\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on HUVEC Cells from ENCODE\ parent wgEncodeRegMarkH3k4me1\ shortLabel HUVEC\ table wgEncodeBroadHistoneHuvecH3k4me1StdSig\ track wgEncodeRegMarkH3k4me1Huvec\ type bigWig 0 4666\ wgEncodeRegMarkH3k4me3Huvec HUVEC bigWig 0 7852 H3K4Me3 Mark (Often Found Near Promoters) on HUVEC Cells from ENCODE 0 4 128 212 255 191 233 255 0 0 0 regulation 1 color 128,212,255\ longLabel H3K4Me3 Mark (Often Found Near Promoters) on HUVEC Cells from ENCODE\ parent wgEncodeRegMarkH3k4me3\ shortLabel HUVEC\ table wgEncodeBroadHistoneHuvecH3k4me3StdSig\ track wgEncodeRegMarkH3k4me3Huvec\ type bigWig 0 7852\ wgEncodeRegMarkH3k27acHuvec HUVEC bigWig 0 3721 H3K27Ac Mark (Often Found Near Regulatory Elements) on HUVEC Cells from ENCODE 2 4 128 212 255 191 233 255 0 0 0 regulation 1 color 128,212,255\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on HUVEC Cells from ENCODE\ parent wgEncodeRegMarkH3k27ac\ shortLabel HUVEC\ table wgEncodeBroadHistoneHuvecH3k27acStdSig\ track wgEncodeRegMarkH3k27acHuvec\ type bigWig 0 3721\ wgEncodeAwgDnaseUwdukeHuvecUniPk HUVEC DNase narrowPeak HUVEC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 4 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform on\ shortLabel HUVEC DNase\ subGroups tier=a20 cellType=a20HUVEC\ track wgEncodeAwgDnaseUwdukeHuvecUniPk\ xGen_Research_Probes_V2 IDT xGen V2.0 P bigBed IDT - xGen Exome Research Panel V2.0 Probes 1 4 255 176 0 255 215 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/xgen-exome-research-panel-v2-probes-hg19.bb\ color 255,176,0\ longLabel IDT - xGen Exome Research Panel V2.0 Probes\ parent exomeProbesets on\ shortLabel IDT xGen V2.0 P\ track xGen_Research_Probes_V2\ type bigBed\ visibility dense\ imr90Insitu IMR90 Hi-C hic In situ Hi-C Chromatin Structure on IMR90 0 4 0 0 0 127 127 127 0 0 0 regulation 1 bigDataUrl /gbdb/hg19/bbi/hic/GSE63525_IMR90_combined.hic\ longLabel In situ Hi-C Chromatin Structure on IMR90\ parent rao2014Hic off\ shortLabel IMR90 Hi-C\ track imr90Insitu\ type hic\ unipInterest Interest bigBed 12 + UniProt Regions of Interest 1 4 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg19/uniprot/unipInterest.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ itemRgb off\ longLabel UniProt Regions of Interest\ parent uniprot\ priority 4\ shortLabel Interest\ track unipInterest\ type bigBed 12 +\ visibility dense\ jaspar2018 JASPAR 2018 TFBS bigBed 6 + JASPAR CORE 2018 - Predicted Transcription Factor Binding Sites 3 4 0 0 0 127 127 127 1 0 0 http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all regulation 1 bigDataUrl /gbdb/hg19/jaspar/JASPAR2018.bb\ filterValues.name Ahr::Arnt,Alx1,ALX3,Alx4,Ar,Arid3a,Arid3b,Arid5a,Arnt,ARNT::HIF1A,Arntl,Arx,ASCL1,Ascl2,Atf1,Atf3,ATF4,ATF7,Atoh1,Bach1::Mafk,BACH2,Barhl1,BARHL2,BARX1,BATF3,BATF::JUN,Bcl6,BCL6B,Bhlha15,BHLHE22,BHLHE23,BHLHE40,BHLHE41,BSX,CDX1,CDX2,CEBPA,CEBPB,CEBPD,CEBPE,CEBPG,CENPB,CLOCK,CREB1,CREB3,CREB3L1,Creb3l2,Creb5,Crem,Crx,CTCF,CTCFL,CUX1,CUX2,DBP,Ddit3::Cebpa,Dlx1,Dlx2,Dlx3,Dlx4,DLX6,Dmbx1,DMRT3,Dux,DUX4,DUXA,E2F1,E2F2,E2F3,E2F4,E2F6,E2F7,E2F8,EBF1,EGR1,EGR2,EGR3,EGR4,EHF,ELF1,ELF3,ELF4,ELF5,ELK1,ELK3,ELK4,EMX1,EMX2,EN1,EN2,EOMES,ERF,ERG,ESR1,ESR2,Esrra,ESRRB,Esrrg,ESX1,ETS1,ETV1,ETV2,ETV3,ETV4,ETV5,ETV6,EVX1,EVX2,EWSR1-FLI1,FEV,FIGLA,FLI1,FOS,FOSB::JUN,FOSB::JUNB,FOSB::JUNB(var.2),FOS::JUN,FOS::JUNB,FOS::JUND,FOS::JUN(var.2),FOSL1,FOSL1::JUN,FOSL1::JUNB,FOSL1::JUND,FOSL1::JUND(var.2),FOSL1::JUN(var.2),FOSL2,FOSL2::JUN,FOSL2::JUNB,FOSL2::JUNB(var.2),FOSL2::JUND,FOSL2::JUND(var.2),FOSL2::JUN(var.2),FOXA1,Foxa2,FOXB1,FOXC1,FOXC2,FOXD1,FOXD2,Foxd3,FOXF2,FOXG1,FOXH1,FOXI1,Foxj2,Foxj3,FOXK1,FOXK2,FOXL1,Foxo1,FOXO3,FOXO4,FOXO6,FOXP1,FOXP2,FOXP3,Foxq1,Gabpa,Gata1,GATA1::TAL1,GATA2,GATA3,Gata4,GATA5,GATA6,GBX1,GBX2,GCM1,GCM2,Gfi1,Gfi1b,GLI2,GLIS1,GLIS2,GLIS3,Gmeb1,GMEB2,GRHL1,GRHL2,GSC,GSC2,GSX1,GSX2,Hand1::Tcf3,Hes1,Hes2,HES5,HES7,HESX1,HEY1,HEY2,Hic1,HIC2,HIF1A,HINFP,HLF,HLTF,HMBOX1,Hmx1,Hmx2,Hmx3,HNF1A,HNF1B,Hnf4a,HNF4G,HOXA10,Hoxa11,HOXA13,HOXA2,HOXA5,Hoxa9,HOXB13,HOXB2,HOXB3,Hoxb5,HOXC10,HOXC11,HOXC12,HOXC13,Hoxc9,HOXD11,HOXD12,HOXD13,Hoxd3,Hoxd8,Hoxd9,HSF1,HSF2,HSF4,Id2,ID4,INSM1,IRF1,IRF2,IRF3,IRF4,IRF5,IRF7,IRF8,IRF9,ISL2,ISX,JDP2,JDP2(var.2),JUN,JUNB,JUNB(var.2),JUND,JUND(var.2),JUN::JUNB,JUN::JUNB(var.2),JUN(var.2),Klf1,Klf12,KLF13,KLF14,KLF16,KLF4,KLF5,KLF9,LBX1,LBX2,LEF1,LHX2,Lhx3,Lhx4,LHX6,Lhx8,LHX9,LIN54,LMX1A,LMX1B,Mafb,MAFF,MAFG,MAFG::NFE2L1,MAFK,MAF::NFE2,MAX,MAX::MYC,Mecom,MEF2A,MEF2B,MEF2C,MEF2D,MEIS1,MEIS2,MEIS3,MEOX1,MEOX2,MGA,MITF,mix-a,MIXL1,MLX,Mlxip,MLXIPL,MNT,MNX1,MSC,MSX1,MSX2,Msx3,MTF1,MXI1,MYB,MYBL1,MYBL2,MYC,MYCN,MYF6,Myod1,Myog,MZF1,MZF1(var.2),NEUROD1,NEUROD2,Neurog1,NEUROG2,NFAT5,NFATC1,NFATC2,NFATC3,NFE2,Nfe2l2,NFIA,NFIC,NFIC::TLX1,NFIL3,NFIX,NFKB1,NFKB2,NFYA,NFYB,NHLH1,NKX2-3,Nkx2-5,Nkx2-5(var.2),NKX2-8,Nkx3-1,NKX3-2,NKX6-1,NKX6-2,Nobox,NOTO,Npas2,NR1A4::RXRA,NR1H2::RXRA,Nr1h3::Rxra,NR1H4,NR2C2,Nr2e1,Nr2e3,NR2F1,NR2F2,Nr2f6,Nr2f6(var.2),NR3C1,NR3C2,NR4A1,NR4A2,NR4A2::RXRA,Nr5a2,NRF1,NRL,OLIG1,OLIG2,OLIG3,ONECUT1,ONECUT2,ONECUT3,OTX1,OTX2,PAX1,Pax2,PAX3,PAX4,PAX5,Pax6,PAX7,PAX9,PBX1,PBX2,PBX3,PDX1,PHOX2A,Phox2b,Pitx1,PITX3,PKNOX1,PKNOX2,PLAG1,POU1F1,POU2F1,POU2F2,Pou2f3,POU3F1,POU3F2,POU3F3,POU3F4,POU4F1,POU4F2,POU4F3,POU5F1,POU5F1B,Pou5f1::Sox2,POU6F1,POU6F2,PPARA::RXRA,PPARG,Pparg::Rxra,PRDM1,PROP1,PROX1,PRRX1,Prrx2,RARA,RARA::RXRA,RARA::RXRG,RARA(var.2),Rarb,Rarb(var.2),Rarg,Rarg(var.2),RAX,RAX2,RBPJ,REL,RELA,RELB,REST,Rfx1,RFX2,RFX3,RFX4,RFX5,Rhox11,RHOXF1,RORA,RORA(var.2),RORB,RORC,RREB1,RUNX1,RUNX2,RUNX3,Rxra,RXRA::VDR,RXRB,RXRG,SCRT1,SCRT2,SHOX,Shox2,SIX1,SIX2,Six3,SMAD2::SMAD3::SMAD4,SMAD3,Smad4,SNAI2,Sox1,SOX10,Sox11,SOX13,SOX15,Sox17,Sox2,SOX21,Sox3,SOX4,Sox5,Sox6,SOX8,SOX9,SP1,SP2,SP3,SP4,SP8,SPDEF,SPI1,SPIB,SPIC,Spz1,SREBF1,Srebf1(var.2),SREBF2,SREBF2(var.2),SRF,SRY,STAT1,STAT1::STAT2,STAT3,Stat4,Stat5a::Stat5b,Stat6,T,TAL1::TCF3,TBP,TBR1,TBX1,TBX15,TBX19,TBX2,TBX20,TBX21,TBX4,TBX5,Tcf12,Tcf21,TCF3,TCF4,Tcf7,TCF7L1,TCF7L2,Tcfl5,TEAD1,TEAD2,TEAD3,TEAD4,TEF,TFAP2A,TFAP2A(var.2),TFAP2A(var.3),TFAP2B,TFAP2B(var.2),TFAP2B(var.3),TFAP2C,TFAP2C(var.2),TFAP2C(var.3),TFAP4,TFCP2,TFDP1,TFE3,TFEB,TFEC,TGIF1,TGIF2,THAP1,TP53,TP63,TP73,TWIST1,Twist2,UNCX,USF1,USF2,VAX1,VAX2,VDR,VENTX,VSX1,VSX2,XBP1,YY1,YY2,ZBED1,ZBTB18,ZBTB33,ZBTB7A,ZBTB7B,ZBTB7C,ZEB1,Zfx,ZIC1,ZIC3,ZIC4,ZNF143,ZNF24,ZNF263,ZNF282,ZNF354C,ZNF384,ZNF410,Znf423,ZNF740,ZSCAN4\ longLabel JASPAR CORE 2018 - Predicted Transcription Factor Binding Sites\ parent jaspar off\ priority 4\ shortLabel JASPAR 2018 TFBS\ track jaspar2018\ type bigBed 6 +\ visibility pack\ wgEncodeHaibGenotypeK562RegionsRep1 K562 1 bed 9 + K562 Copy number variants Replicate 1 from ENCODE/HAIB 0 4 0 0 0 127 127 127 0 0 0 varRep 1 longLabel K562 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype on\ shortLabel K562 1\ subGroups cellType=t1K562 obtainedBy=HudsonAlpha treatment=None rep=rep1\ track wgEncodeHaibGenotypeK562RegionsRep1\ type bed 9 +\ wgEncodeGisDnaPetK562F1kAln K562 1k bam ENCODE GIS DNA PET Alignments (1k frags in K562 cells) 1 4 46 0 184 150 127 219 0 0 0 varRep 1 color 46,0,184\ longLabel ENCODE GIS DNA PET Alignments (1k frags in K562 cells)\ parent wgEncodeGisDnaPetViewAlignments off\ shortLabel K562 1k\ subGroups cellType=t1K562 fragSize=a1K\ track wgEncodeGisDnaPetK562F1kAln\ wgEncodeUncBsuProtK562CytosolSig K562 cytosol peptideMapping K562 Cytosol Proteogenomic Hg19 Mapping Hits from ENCODE/UNC/BSU 2 4 46 0 184 150 127 219 1 0 0 expression 1 color 46,0,184\ longLabel K562 Cytosol Proteogenomic Hg19 Mapping Hits from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtViewSignal\ shortLabel K562 cytosol\ subGroups view=Signal cellType=t1K562 localization=CYTOSOL protocol=INGEL\ track wgEncodeUncBsuProtK562CytosolSig\ type peptideMapping\ visibility full\ wgEncodeUchicagoTfbsK562Egata2ControlSig K562 GATA2/GFP Sg bigWig -3732.796387 6083.967285 K562 GATA2 GFP-tag TFBS Signal from ENCODE/UChicago 2 4 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 GATA2 GFP-tag TFBS Signal from ENCODE/UChicago\ parent wgEncodeUchicagoTfbsViewSignal\ shortLabel K562 GATA2/GFP Sg\ subGroups view=Signal factor=GATA2 cellType=K562 control=ControlGATA2 rep=repPOOLED\ track wgEncodeUchicagoTfbsK562Egata2ControlSig\ type bigWig -3732.796387 6083.967285\ wgEncodeSydhHistoneK562H3k4me3bUcdSig K562 H3K4me3 bigWig 1.000000 8204.000000 K562 H3K4me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 4 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K4me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal on\ shortLabel K562 H3K4me3\ subGroups view=Signal factor=H3K04ME3B cellType=aK562 control=UCD treatment=NONE\ track wgEncodeSydhHistoneK562H3k4me3bUcdSig\ type bigWig 1.000000 8204.000000\ wgEncodeSydhRnaSeqK562Ifna6hPolyaRaw K562 pA+ Na6h bigWig 0.000000 134219.000000 K562 polyA+ IFNa6h RNA-seq Raw Signal from ENCODE/SYDH 2 4 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 polyA+ IFNa6h RNA-seq Raw Signal from ENCODE/SYDH\ parent wgEncodeSydhRnaSeqViewSignal on\ shortLabel K562 pA+ Na6h\ subGroups view=RawSignal cellType=t1K562 rnaExtract=polyA treatment=IFNa6h\ track wgEncodeSydhRnaSeqK562Ifna6hPolyaRaw\ type bigWig 0.000000 134219.000000\ wgEncodeGisChiaPetK562Pol2SigRep1 K562 Pol2 Sig 1 bigWig 1.000000 1903.000000 K562 Pol2 ChIA-PET Signal Rep 1 from ENCODE/GIS-Ruan 2 4 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Pol2 ChIA-PET Signal Rep 1 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetSignal on\ shortLabel K562 Pol2 Sig 1\ subGroups view=Signal factor=POL2 cellType=t1K562 rep=rep1\ track wgEncodeGisChiaPetK562Pol2SigRep1\ type bigWig 1.000000 1903.000000\ wgEncodeUwDgfK562Raw K562 Raw bigWig 1.000000 218367.000000 K562 DNaseI DGF Raw Signal from ENCODE/UW 0 4 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw on\ shortLabel K562 Raw\ subGroups view=zRaw cellType=t1K562 treatment=aNONE rep=rep1\ track wgEncodeUwDgfK562Raw\ type bigWig 1.000000 218367.000000\ pgKb1Indel KB1 indels pgSnp KB1 indels from 454 and Illumina 3 4 0 0 0 127 127 127 0 0 0 varRep 1 longLabel KB1 indels from 454 and Illumina\ origAssembly hg18\ parent pgSnpPSU\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel KB1 indels\ subGroups view=A_PSU id=AA_KB1 type=Indel\ track pgKb1Indel\ MaxAFmutT MaxAF Mutation: T bigWig -1.29334 0.75731 BayesDel v1 Score (MaxAF): Mutation is T 2 4 68 169 170 161 212 212 0 0 0

Description

\ \

\ The "Prediction Scores" container track includes subtracks showing the results of prediction\ scores.

\ \

BayesDel

\

BayesDel is a deleteriousness meta-score for coding and non-coding variants, single nucleotide\ variants, and small insertion/deletions. The range of the score is from -1.29334 to 0.75731.\ The higher the score, the more likely the variant is pathogenic.

\ \

\ For gene discovery research, a universal cutoff value (0.0692655 with MaxAF, -0.0570105 without\ MaxAF) was obtained by maximizing sensitivity and specificity in classifying ClinVar variants;\ Version 1 (build date 2017-08-24).

\

\ For clinical variant classification, Bayesdel thresholds have been calculated for a variant to\ reach various levels of evidence; please refer to Pejaver et al. 2022 for general application\ of these scores in clinical applications.\

\ \

Display Conventions and Configuration

\ \

BayesDel

\

There are eight subtracks for the BayesDel track: four include pre-computed MaxAF-integrated BayesDel\ scores for missense variants, one for each base. The other four are of the same format, but scores\ are not MaxAF-integrated.

\ \

For SNVs, at each genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing the reference allele,\ (e.g. A to A) is always set to zero.

\ \

Note: There are cases in which a genomic position will have one value missing.\

\ \

When using this track, zoom in until you can see every base pair at the top of the display.\ Otherwise, there are several nucleotides per pixel under your mouse cursor and instead of an actual\ score, the tooltip text will show the average score of all nucleotides under the cursor. This is\ indicated by the prefix "~" in the mouseover.\

\ \

Data Access

\

BayesDel scores are available at the\ BayesDel website.\ \

Methods

\

BayesDel data was converted from the files provided on the\ BayesDel_170824 Database.\ The number 170824 is the date (2017-08-24) the scores were created. Both sets of BayesDel scores are\ available in this database, one integrated MaxAF (named BayesDel_170824_addAF) and one without\ (named BayesDel_170824_noAF). Data conversion was performed using\ \ custom Python scripts.\

\ \

Credits

\

Thanks to the BayesDel team for providing precomputed data, and to Tiana Pereira, Christopher\ Lee, Gerardo Perez, and Anna Benet-Pages of the Genome Browser team.

\ \

References

\

\ Feng BJ.\ \ PERCH: A Unified Framework for Disease Gene Prioritization.\ Hum Mutat. 2017 Mar;38(3):243-251.\ PMID: 27995669; PMC: PMC5299048\

\ \

\ Pejaver V, Byrne AB, Feng BJ, Pagel KA, Mooney SD, Karchin R, O'Donnell-Luria A, Harrison SM,\ Tavtigian SV, Greenblatt MS et al.\ \ Calibration of computational tools for missense variant pathogenicity classification and ClinGen\ recommendations for PP3/BP4 criteria.\ Am J Hum Genet. 2022 Dec 1;109(12):2163-2177.\ PMID: 36413997; PMC: PMC9748256\

\ \

\ Tian Y, Pesaran T, Chamberlin A, Fenwick RB, Li S, Gau CL, Chao EC, Lu HM, Black MH, Qian D.\ \ REVEL and BayesDel outperform other in silico meta-predictors for clinical variant\ classification.\ Sci Rep. 2019 Sep 4;9(1):12752.\ PMID: 31484976; PMC: PMC6726608\

\ phenDis 0 bigDataUrl /gbdb/hg19/bayesDel/MaxAFBayesDelMutT.bw\ color 68, 169, 170\ html predictionScoresSuper\ longLabel BayesDel v1 Score (MaxAF): Mutation is T\ maxHeightPixels 128:20:8\ parent bayesDel on\ shortLabel MaxAF Mutation: T\ track MaxAFmutT\ type bigWig -1.29334 0.75731\ visibility full\ windowingFunction mean+whiskers\ ucsfMedipSeqBrainCoverage MeDIP RawSignal bigWig 1 300 MeDIP-seq Raw Signal 2 4 100 0 0 200 100 0 0 0 0 regulation 0 altColor 200,100,0\ autoScale on\ color 100,0,0\ configurable on\ longLabel MeDIP-seq Raw Signal\ maxHeightPixels 128:32:16\ noInherit on\ parent ucsfBrainMethylViewCOV\ priority 6\ shortLabel MeDIP RawSignal\ subGroups view=COV sampleType=Brain assayType=MeDIP2\ track ucsfMedipSeqBrainCoverage\ type bigWig 1 300\ yLineOnOff on\ mtrT Mutation: T bigWig MTR Score: Mutation is T 2 4 124 39 175 189 147 215 0 0 0 phenDis 0 bigDataUrl /gbdb/hg19/mtr/t.bw\ longLabel MTR Score: Mutation is T\ maxHeightPixels 128:40:8\ parent mtrScores on\ shortLabel Mutation: T\ track mtrT\ type bigWig\ visibility full\ revelT Mutation: T bigWig REVEL: Mutation is T 1 4 150 80 200 202 167 227 0 0 0 phenDis 0 bigDataUrl /gbdb/hg19/revel/t.bw\ longLabel REVEL: Mutation is T\ maxHeightPixels 128:20:8\ maxWindowToDraw 10000000\ maxWindowToQuery 500000\ mouseOverFunction noAverage\ parent revel on\ shortLabel Mutation: T\ track revelT\ type bigWig\ viewLimits 0:1.0\ viewLimitsMax 0:1.0\ visibility dense\ caddT Mutation: T bigWig CADD 1.6 Score: Mutation is T 1 4 100 130 160 177 192 207 0 0 0 phenDis 0 bigDataUrl /gbdb/hg19/cadd/t.bw\ longLabel CADD 1.6 Score: Mutation is T\ maxHeightPixels 128:20:8\ parent cadd on\ shortLabel Mutation: T\ track caddT\ type bigWig\ viewLimits 10:50\ viewLimitsMax 0:100\ visibility dense\ getRmSangerDeadZone NCBI Sanger Dead Zone bigBed 3 + NCBI GeT-RM Sanger Dead Zone 1 4 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/bbi/problematic/sangerDeadZone.bb\ longLabel NCBI GeT-RM Sanger Dead Zone\ parent problematic\ priority 4\ shortLabel NCBI Sanger Dead Zone\ track getRmSangerDeadZone\ type bigBed 3 +\ visibility dense\ uMassBrainHistoneSignalS1NeuP0pt5yrsM NeuN+ 0.50yrs M bigWig UMMS Brain Histone H3K4me3 (NeuN+ D1) Gender-male Age-0.5 2 4 0 255 0 127 255 127 0 0 0 regulation 0 color 0,255,0\ longLabel UMMS Brain Histone H3K4me3 (NeuN+ D1) Gender-male Age-0.5\ parent uMassBrainHistoneViewSignal\ shortLabel NeuN+ 0.50yrs M\ subGroups view=Signal donor=b_1 cellType=norm sex=male age=a_infant\ track uMassBrainHistoneSignalS1NeuP0pt5yrsM\ type bigWig\ dhcVcfHGDP00542 Papuan Variants vcfTabix Papuan Individual (HGDP00542) Variant Calls 0 4 0 0 0 127 127 127 0 0 0 denisova 1 longLabel Papuan Individual (HGDP00542) Variant Calls\ parent dhcVcfModern\ priority 4\ shortLabel Papuan Variants\ track dhcVcfHGDP00542\ vcfDoMaf off\ polyASeqSitesKidneyRev PolyA-Seq Kidney bigWig 0.220000 12818.589844 Poly(A)-tail sequencing of Kidney from Merck (Rev strand) 2 4 0 0 0 127 127 127 0 0 0 rna 0 color 0,0,0\ longLabel Poly(A)-tail sequencing of Kidney from Merck (Rev strand)\ parent polyASeqSitesSignalView\ shortLabel PolyA-Seq Kidney\ subGroups view=Signal tissType=Kidney strand=rev\ track polyASeqSitesKidneyRev\ type bigWig 0.220000 12818.589844\ prsChKidneyDis PRS-E Ch Kidney Dis bigBed 8 + Polygenic Risk Scores eMERGE: Chronic Kidney Disease 1 4 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg19/prsEmerge/ckd.bb\ longLabel Polygenic Risk Scores eMERGE: Chronic Kidney Disease\ parent prsEmerge pack\ shortLabel PRS-E Ch Kidney Dis\ track prsChKidneyDis\ type bigBed 8 +\ ncbiRefSeqOther RefSeq Other bigBed 12 + NCBI RefSeq Other Annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*) 1 4 32 32 32 143 143 143 0 0 0 genes 1 bigDataUrl /gbdb/hg19/ncbiRefSeq/ncbiRefSeqOther.bb\ color 32,32,32\ labelFields gene\ longLabel NCBI RefSeq Other Annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*)\ parent refSeqComposite off\ priority 4\ searchIndex name\ searchTrix /gbdb/hg19/ncbiRefSeq/ncbiRefSeqOther.ix\ shortLabel RefSeq Other\ skipEmptyFields on\ track ncbiRefSeqOther\ type bigBed 12 +\ urls GeneID="https://www.ncbi.nlm.nih.gov/gene/$$" MIM="https://www.ncbi.nlm.nih.gov/omim/612091" HGNC="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$$" FlyBase="http://flybase.org/reports/$$" WormBase="http://www.wormbase.org/db/gene/gene?name=$$" RGD="https://rgd.mcw.edu/rgdweb/search/search.html?term=$$" SGD="https://www.yeastgenome.org/locus/$$" miRBase="http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$$" ZFIN="https://zfin.org/$$" MGI="http://www.informatics.jax.org/marker/$$"\ burgeRnaSeqGemMapperAlignMCF7 RNA-seq MCF7 bed 12 Burge Lab RNA-seq 32mer Reads from MCF-7 Breast Adenocarcinoma Cell Line 1 4 12 12 120 133 133 187 0 0 0 expression 1 longLabel Burge Lab RNA-seq 32mer Reads from MCF-7 Breast Adenocarcinoma Cell Line\ parent burgeRnaSeqGemMapperAlignViewAlignments off\ shortLabel RNA-seq MCF7\ subGroups view=Alignments tissueType=MCF7\ track burgeRnaSeqGemMapperAlignMCF7\ gnomadGenomes15XPercentage Sample % > 15X bigWig 0 1 gnomAD Percentage of Genome Samples with at least 15X Coverage 0 4 165 0 90 210 127 172 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.genomes.coverage.depth15.bw\ color 165,0,90\ longLabel gnomAD Percentage of Genome Samples with at least 15X Coverage\ parent gnomadGenomesReadDepthPct off\ priority 4\ shortLabel Sample % > 15X\ subGroups view=gRDepth\ track gnomadGenomes15XPercentage\ gnomadExomes15XPercentage Sample % > 15X bigWig 0 1 gnomAD Percentage of Exome Samples with at least 15X Coverage 0 4 165 0 90 210 127 172 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.exomes.coverage.depth15.bw\ color 165,0,90\ longLabel gnomAD Percentage of Exome Samples with at least 15X Coverage\ parent gnomadExomesReadDepthPct off\ priority 4\ shortLabel Sample % > 15X\ subGroups view=eRDepth\ track gnomadExomes15XPercentage\ hiSeqDepthTop5Pct Top 0.05 Depth bed 3 Top 0.05 of Read Depth Distribution 0 4 139 69 19 197 162 137 0 0 0 map 1 longLabel Top 0.05 of Read Depth Distribution\ parent hiSeqDepth\ priority 4\ shortLabel Top 0.05 Depth\ track hiSeqDepthTop5Pct\ phyloP46wayAll Vertebrate Cons wig -14.08 6.42 Vertebrate Basewise Conservation by PhyloP 2 4 40 40 120 120 40 40 0 0 0 compGeno 0 altColor 120,40,40\ autoScale off\ color 40,40,120\ configurable on\ logoMaf multiz46way\ longLabel Vertebrate Basewise Conservation by PhyloP\ maxHeightPixels 100:50:11\ noInherit on\ parent cons46wayViewphyloP off\ priority 4\ shortLabel Vertebrate Cons\ spanList 1\ subGroups view=phyloP clade=vert\ track phyloP46wayAll\ type wig -14.08 6.42\ viewLimits -4:4\ windowingFunction mean\ bamSLVi33dot16 Vi33.16 Sequence bam Vi33.16 Sequence Reads 0 4 0 0 0 127 127 127 0 0 0 neandertal 1 longLabel Vi33.16 Sequence Reads\ parent ntSeqReads\ shortLabel Vi33.16 Sequence\ subGroups sample=Vi33dot16\ track bamSLVi33dot16\ chainOrnAna1 Platypus Chain chain ornAna1 Platypus (Mar. 2007 (WUGSC 5.0.1/ornAna1)) Chained Alignments 3 5 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Platypus (Mar. 2007 (WUGSC 5.0.1/ornAna1)) Chained Alignments\ otherDb ornAna1\ parent vertebrateChainNetViewchain off\ shortLabel Platypus Chain\ subGroups view=chain species=s005 clade=c00\ track chainOrnAna1\ type chain ornAna1\ chainPonAbe2 Orangutan Chain chain ponAbe2 Orangutan (July 2007 (WUGSC 2.0.2/ponAbe2)) Chained Alignments 3 5 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Orangutan (July 2007 (WUGSC 2.0.2/ponAbe2)) Chained Alignments\ otherDb ponAbe2\ parent primateChainNetViewchain off\ shortLabel Orangutan Chain\ subGroups view=chain species=s013b clade=c00\ track chainPonAbe2\ type chain ponAbe2\ chainMm10 Mouse Chain chain mm10 Mouse (Dec. 2011 (GRCm38/mm10)) Chained Alignments 3 5 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Mouse (Dec. 2011 (GRCm38/mm10)) Chained Alignments\ otherDb mm10\ parent placentalChainNetViewchain off\ shortLabel Mouse Chain\ subGroups view=chain species=s012a clade=c00\ track chainMm10\ type chain mm10\ est Human ESTs psl est Human ESTs Including Unspliced 0 5 0 0 0 127 127 127 1 0 0

Description

\

\ This track shows alignments between human expressed sequence tags \ (ESTs) in GenBank and the genome. ESTs are single-read sequences, \ typically about 500 bases in length, that usually represent fragments of \ transcribed genes.

\

\ NOTE: As of April, 2007, we no longer include GenBank sequences \ that contain the following URL as part of the record:\

\ http://fulllength.invitrogen.com\
\ Some of these entries are the result of alignment to pseudogenes,\ followed by "correction" of the EST to match the genomic sequence. \ It is therefore not the sequence of the actual EST and makes it appear that \ the EST is transcribed. Invitrogen no longer sells the clones.\

\ \

Display Conventions and Configuration

\

\ This track follows the display conventions for \ PSL alignment tracks. In dense display mode, the items that\ are more darkly shaded indicate matches of better quality.

\

\ The strand information (+/-) indicates the\ direction of the match between the EST and the matching\ genomic sequence. It bears no relationship to the direction\ of transcription of the RNA with which it might be associated.

\

\ The description page for this track has a filter that can be used to change \ the display mode, alter the color, and include/exclude a subset of items \ within the track. This may be helpful when many items are shown in the track \ display, especially when only some are relevant to the current task.

\

\ To use the filter:\

    \
  1. Type a term in one or more of the text boxes to filter the EST\ display. For example, to apply the filter to all ESTs expressed in a specific\ organ, type the name of the organ in the tissue box. To view the list of \ valid terms for each text box, consult the table in the Table Browser that \ corresponds to the factor on which you wish to filter. For example, the \ "tissue" table contains all the types of tissues that can be \ entered into the tissue text box. Multiple terms may be entered at once, \ separated by a space. Wildcards may also be used in the\ filter.\
  2. If filtering on more than one value, choose the desired combination\ logic. If "and" is selected, only ESTs that match all filter \ criteria will be highlighted. If "or" is selected, ESTs that \ match any one of the filter criteria will be highlighted.\
  3. Choose the color or display characteristic that should be used to \ highlight or include/exclude the filtered items. If "exclude" is \ chosen, the browser will not display ESTs that match the filter criteria. \ If "include" is selected, the browser will display only those \ ESTs that match the filter criteria.\

\

\ This track may also be configured to display base labeling, a feature that\ allows the user to display all bases in the aligning sequence or only those \ that differ from the genomic sequence. For more information about this option,\ click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\

\ \

Methods

\

\ To make an EST, RNA is isolated from cells and reverse\ transcribed into cDNA. Typically, the cDNA is cloned\ into a plasmid vector and a read is taken from the 5'\ and/or 3' primer. For most — but not all — ESTs, the\ reverse transcription is primed by an oligo-dT, which\ hybridizes with the poly-A tail of mature mRNA. The\ reverse transcriptase may or may not make it to the 5'\ end of the mRNA, which may or may not be degraded.

\

\ In general, the 3' ESTs mark the end of transcription\ reasonably well, but the 5' ESTs may end at any point\ within the transcript. Some of the newer cap-selected\ libraries cover transcription start reasonably well. Before the \ cap-selection techniques\ emerged, some projects used random rather than poly-A\ priming in an attempt to retrieve sequence distant from the\ 3' end. These projects were successful at this, but as\ a side effect also deposited sequences from unprocessed\ mRNA and perhaps even genomic sequences into the EST databases.\ Even outside of the random-primed projects, there is a\ degree of non-mRNA contamination. Because of this, a\ single unspliced EST should be viewed with considerable\ skepticism.

\

\ To generate this track, human ESTs from GenBank were aligned \ against the genome using blat. Note that the maximum intron length\ allowed by blat is 750,000 bases, which may eliminate some ESTs with very \ long introns that might otherwise align. When a single \ EST aligned in multiple places, the alignment having the \ highest base identity was identified. Only alignments having\ a base identity level within 0.5% of the best and at least 96% base identity \ with the genomic sequence were kept.

\ \

Credits

\

\ This track was produced at UCSC from EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide.

\ \

References

\

\ Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\ GenBank: update. Nucleic Acids Res.\ 2004 Jan 1;32(Database issue):D23-6.

\

\ Kent WJ.\ BLAT - The BLAST-Like Alignment Tool.\ Genome Res. 2002 Apr;12(4):656-64.

\ rna 1 baseColorUseSequence genbank\ group rna\ indelDoubleInsert on\ indelQueryInsert on\ intronGap 30\ longLabel Human ESTs Including Unspliced\ maxItems 300\ priority 5\ shortLabel Human ESTs\ spectrum on\ table all_est\ track est\ type psl est\ visibility hide\ wgEncodeHaibGenotypeA549RegionsRep1 A549 1 bed 9 + A549 Copy number variants Replicate 1 from ENCODE/HAIB 0 5 0 0 0 127 127 127 0 0 0 varRep 1 longLabel A549 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel A549 1\ subGroups cellType=t2A549 obtainedBy=HudsonAlpha treatment=None rep=rep1\ track wgEncodeHaibGenotypeA549RegionsRep1\ type bed 9 +\ wgEncodeUwAffyExonArrayA549SimpleSignalRep2 A549 2 broadPeak A549 Exon array Signal Rep 2 from ENCODE/UW 0 5 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel A549 2\ subGroups cellType=t2A549 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayA549SimpleSignalRep2\ type broadPeak\ encTfChipPkENCFF243NQJ A549 CEBPB narrowPeak Transcription Factor ChIP-seq Peaks of CEBPB in A549 from ENCODE 3 (ENCFF243NQJ) 1 5 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CEBPB in A549 from ENCODE 3 (ENCFF243NQJ)\ parent encTfChipPk off\ shortLabel A549 CEBPB\ subGroups cellType=A549 factor=CEBPB\ track encTfChipPkENCFF243NQJ\ wgEncodeHaibRnaSeqA549Dex100pmRawRep1 A549 DEX100pM 1 bigWig 0.122735 1558.979980 A549 DEX 1 hr 100 pM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 5 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 DEX 1 hr 100 pM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal on\ shortLabel A549 DEX100pM 1\ subGroups view=RawSignal cellType=t2A549 treatment=DEX100PM rep=rep1\ track wgEncodeHaibRnaSeqA549Dex100pmRawRep1\ type bigWig 0.122735 1558.979980\ wgEncodeUwDgfA549Hotspots A549 Hot broadPeak A549 DNaseI DGF Hotspots from ENCODE/UW 0 5 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel A549 Hot\ subGroups view=Hotspots cellType=t2A549 treatment=aNONE rep=rep1\ track wgEncodeUwDgfA549Hotspots\ type broadPeak\ snpArrayAffy250Sty Affy 250KSty bed 6 + Affymetrix GeneChip Human Mapping 250K Sty 0 5 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Affymetrix GeneChip Human Mapping 250K Sty\ parent genotypeArrays off\ priority 5\ shortLabel Affy 250KSty\ track snpArrayAffy250Sty\ type bed 6 +\ affyU133 Affy U133 psl . Alignments of Affymetrix Consensus/Exemplars from HG-U133 0 5 0 0 0 127 127 127 0 0 0

Description

\

\ This track shows the location of the consensus and exemplar sequences used \ for the selection of probes on the Affymetrix HG-U133A and HG-U133B chips.

\ \

Methods

\

\ Consensus and exemplar sequences were downloaded from the\ Affymetrix Product Support\ and mapped to the genome using blat followed by pslReps with the \ parameters: 

   -minCover=0.5 -minAli=0.97 -nearTop=0.005\

\ \

Credits

\

\ Thanks to Affymetrix for the data underlying this track.

\ expression 1 group expression\ html ../affyU133\ longLabel Alignments of Affymetrix Consensus/Exemplars from HG-U133\ parent affyArchive\ priority 5\ shortLabel Affy U133\ track affyU133\ type psl .\ visibility hide\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep1LK4_CNhs13340_ctss_fwd AorticSmsToFgf2_00hr15minBr1+ bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep1 (LK4)_CNhs13340_12643-134G6_forward 0 5 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12643-134G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep1%20%28LK4%29.CNhs13340.12643-134G6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep1 (LK4)_CNhs13340_12643-134G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12643-134G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep1LK4_CNhs13340_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12643-134G6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep1LK4_CNhs13340_tpm_fwd AorticSmsToFgf2_00hr15minBr1+ bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep1 (LK4)_CNhs13340_12643-134G6_forward 1 5 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12643-134G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep1%20%28LK4%29.CNhs13340.12643-134G6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep1 (LK4)_CNhs13340_12643-134G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12643-134G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep1LK4_CNhs13340_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12643-134G6\ urlLabel FANTOM5 Details:\ gtexEqtlTissueArteryCoronary arteryCoronary bed 9 + Expression QTL in Artery_Coronary from GTEx V6 0 5 238 106 80 246 180 167 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 238,106,80\ idInUrlSql select gene from gtexEqtlTissueArteryCoronary where name='%s'\ longLabel Expression QTL in Artery_Coronary from GTEx V6\ parent gtexEqtlTissue on\ shortLabel arteryCoronary\ track gtexEqtlTissueArteryCoronary\ lincRNAsCTBreast Breast bed 5 + lincRNAs from breast 1 5 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from breast\ parent lincRNAsAllCellType on\ shortLabel Breast\ subGroups view=lincRNAsRefseqExp tissueType=breast\ track lincRNAsCTBreast\ dhcHumDerDenAncCcdsFrameshiftCodingFixedDbSnp CC FrShft FxS bigBed 4 + Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: CCDS Frameshift Coding 3 5 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: CCDS Frameshift Coding\ parent dhcHumDerDenAncCcds\ shortLabel CC FrShft FxS\ subGroups view=Ccds subset=CcdsFrameshiftCoding freq=FixedDbSnp\ track dhcHumDerDenAncCcdsFrameshiftCodingFixedDbSnp\ wgEncodeCrgMapabilityAlign75mer CRG Align 75 bigWig 0.00 1.00 Alignability of 75mers by GEM from ENCODE/CRG(Guigo) 0 5 0 100 0 127 177 127 0 0 0 map 1 color 0,100,0\ longLabel Alignability of 75mers by GEM from ENCODE/CRG(Guigo)\ origAssembly hg19\ parent wgEncodeMapabilityViewCRGMAP off\ shortLabel CRG Align 75\ subGroups view=CRGMAP win=w075 lab=CRG\ track wgEncodeCrgMapabilityAlign75mer\ type bigWig 0.00 1.00\ dbVar_common_european dbVar Curated European SVs bigBed 9 + . NCBI dbVar Curated Common SVs: European 3 5 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg19/bbi/dbVar/common_european.bb\ longLabel NCBI dbVar Curated Common SVs: European\ parent dbVar_common on\ shortLabel dbVar Curated European SVs\ track dbVar_common_european\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ decodeFemaleCarrier Female Carry bigWig 0.0 77.704 deCODE recombination map, female carrier 0 5 187 102 255 221 178 255 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 0 color 187,102,255\ configurable on\ longLabel deCODE recombination map, female carrier\ parent femaleView\ priority 5\ shortLabel Female Carry\ subGroups view=female\ track decodeFemaleCarrier\ type bigWig 0.0 77.704\ affyExonProbesetFull Full PS bed 12 Affymetrix Human Exon Array Full Probesets 1 5 205 96 144 230 175 199 0 0 0 expression 1 color 205,96,144\ longLabel Affymetrix Human Exon Array Full Probesets\ parent affyExonProbeset off\ shortLabel Full PS\ subGroups view=v1Probeset level=L3Full\ track affyExonProbesetFull\ allHg19RS_BW GERP bigWig -15 7 GERP Scores for Mammalian Alignments 0 5 0 0 0 127 127 127 0 0 0

Description

\ \

Genomic Evolutionary Rate Profiling (GERP) is a method for producing\ position-specific estimates of evolutionary constraint using maximum likelihood evolutionary rate\ estimation. It also discovers "constrained elements" where multiple positions combine to give a\ signal that is indicative of a putative functional element; this track shows the position-specific\ scores only, not the element predictions.

\ \

Constraint intensity at each individual alignment\ position is quantified in terms of a "rejected substitutions" (RS) score, defined as the number of\ substitutions expected under neutrality minus the number of substitutions "observed" at the\ position. This concept was described, and a first implementation of GERP was presented, in Cooper et\ al (2005). GERP++ as described in Davydov et al (2010) uses a more rigorous set of algorithms to\ calculate site-specific RS scores and to discover evolutionarily constrained elements.

\ \

Sites are scored independently. Positive scores represent a substitution deficit (i.e., fewer\ substitutions than the average neutral site) and thus indicate that a site may be under evolutionary\ constraint. Negative scores indicate that a site is probably evolving neutrally; negative scores\ should not be interpreted as evidence of accelerated rates of evolution because of too many strong\ confounders, such as alignment uncertainty or rate variance. Positive scores scale with the level of\ constraint, such that the greater the score, the greater the level of evolutionary constraint\ inferred to be acting on that site.

\ \

We applied GERP, as implemented in the GERP++ software\ package, to quantify the level of evolutionary constraint acting on each site in hg19, based on an\ alignment of 35 mammals to hg19 with a maximum phylogenetic scope of 6.18 substitutions per neutral\ site. Gaps in the alignment are treated as missing data, which means that the number of\ substitutions per neutral site will be less than 6.18 in sites where one or more species has a gap. \ Thus, RS scores range from a maximum of 6.18 down to a below-zero minimum, which we cap at -12.36.\ RS scores will vary with alignment depth and level of sequence conservation. A score of 0 indicates\ that the alignment was too shallow at that position to get a meaningful estimate of constraint.\ Should classification into "constrained" and "unconstrained" sites be desired, a threshold may be\ chosen above which sites are considered "constrained". In practice, we find that a RS score\ threshold of 2 provides high sensitivity while still strongly enriching for truly constrained sites.\

\ \

Methods

\ \

Given a multiple sequence alignment and a phylogenetic tree with branch\ lengths representing the neutral rate between the species within that alignment, GERP++ quantifies\ constraint intensity at each individual position in terms of rejected substitutions, the difference\ between the neutral rate and the estimated evolutionary rate at the position. GERP++ begins with a\ pre-defined neutral tree relating the genomes present within the alignment that supplies both the\ total neutral rate across the entire tree and the relative length of each individual branch. For\ each alignment column, we estimate a scaling factor, applied uniformly to all branches of the tree,\ that maximizes the probability of the observed nucleotides in the alignment column. The product of\ the scaling factor and the neutral rate defines the 'observed' rate of evolution at each position.\ GERP++ uses the HKY85 model of evolution with the transition/transversion ratio set to 2.0 and\ nucleotide frequencies estimated from the multiple alignment.

\ \

To generate RS scores for\ each position in the human genome, we used GERP++ to analyze the TBA alignment of hg19 to 35 other\ mammalian species (listed here: \ http://hgdownload.soe.ucsc.edu/goldenPath/hg19/multiz46way/), spanning over 3 billion\ positions (see the description for the 'Conservation' track for details of this alignment). The\ alignment was compressed to remove gaps in the human sequence, and GERP++ scores were computed for\ every position with at least 3 ungapped species present. Importantly, the human sequence was\ removed from the alignment and not included in either the neutral rate estimation or the\ site-specific "observed" estimates, and therefore is not included in the RS score. This is\ consistent with the published work on GERP, and is done to eliminate the confounding influence of\ deleterious derived alleles segregating in the human population that are present in the reference\ sequence. The phylogenetic tree used was the generally accepted topology. Neutral branch lengths\ were estimated from 4-fold degenerate sites in the alignment.

\ \

Credits

\ \

The RS\ scores were generated by David Goode, Dept. of Genetics, Stanford University. GERP++ was developed\ by Eugene Davydov and Serafim Batzoglou, Dept. of Computer Science, Stanford University; Arend\ Sidow, Depts. of Pathology and Genetics, Stanford University; and Gregory Cooper, HudsonAlpha\ Institute for Biotechnology, Huntsville, AL.

\ \

References

\ \

Davydov EV, Goode DL,\ Sirota M, Cooper GM, Sidow A, Batzoglou S. Identifying a high fraction of the human genome to be under selective constraint\ using GERP++ . PLoS Comput Biol. 2010 Dec 2;6(12):e1001025.

\ \

Cooper GM, Stone\ EA, Asimenos G; NISC Comparative Sequencing Program, Green ED, Batzoglou S, Sidow A. Distribution and intensity of\ constraint in mammalian genomic sequence . Genome Res. 2005 Jul;15(7):901-13.

\ \

For more information on using GERP to detect putatively functional genetic variation:

Cooper\ GM, Goode DL, Ng SB, Sidow A, Bamshad MJ, Shendure J, Nickerson DA. \ Single-nucleotide evolutionary constraint scores highlight disease-causing mutations . \ Nature Methods. 2010 Apr;7(4):250-1.

\ \

Goode DL, Cooper GM, Schmutz J, Dickson M,\ Gonzales E, Tsai M, Karra K, Davydov E, Batzoglou S, Myers RM, Sidow A. Evolutionary constraint\ facilitates interpretation of genetic variation in resequenced human genomes . Genome Res.\ 2010 Mar;20(3):301-10.

\ compGeno 0 autoScale on\ group compGeno\ longLabel GERP Scores for Mammalian Alignments\ maxHeightPixels 128:64:20\ priority 5\ shortLabel GERP\ track allHg19RS_BW\ type bigWig -15 7\ visibility hide\ geneHancerRegElements GH Reg Elems bigBed 9 + Enhancers and promoters from GeneHancer 1 5 0 0 0 127 127 127 0 0 0 http://www.genecards.org/Search/Keyword?queryString=$$ regulation 1 bigDataUrl /gbdb/hg19/geneHancer/geneHancerRegElementsAll.hg19.bb\ longLabel Enhancers and promoters from GeneHancer\ parent ghGeneHancer off\ shortLabel GH Reg Elems\ subGroups set=b_ALL view=a_GH\ track geneHancerRegElements\ wgEncodeGisRnaPetGm12878NucleusPapClustersRep1 GM12 nucl pA+ 1 bed 6 + GM12878 nucleus polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS 2 5 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleus polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel GM12 nucl pA+ 1\ subGroups view=v1Clusters cellType=aGM12878 cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetGm12878NucleusPapClustersRep1\ type bed 6 +\ wgEncodeAwgTfbsHaibGm12878Bcl3V0416101UniPk GM12878 BCL3 narrowPeak GM12878 TFBS Uniform Peaks of BCL3 from ENCODE/HudsonAlpha/Analysis 1 5 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of BCL3 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 BCL3\ subGroups tier=a10 cellType=a10GM12878 factor=BCL3 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Bcl3V0416101UniPk\ wgEncodeOpenChromChipGm12878CtcfSig GM12878 CTCF DS bigWig 0.000000 7.630200 GM12878 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 5 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal\ shortLabel GM12878 CTCF DS\ subGroups treatment=AANONE view=SIG factor=CTCF cellType=t1GM12878\ track wgEncodeOpenChromChipGm12878CtcfSig\ type bigWig 0.000000 7.630200\ wgEncodeSunyRipSeqGm12878Elavl1SigRep2 GM12878 ELAVL1 2 bigWig 0.000000 55258.855469 GM12878 ELAVL1 RIP-seq Signal Rep 2 from ENCODE/SUNY 2 5 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ELAVL1 RIP-seq Signal Rep 2 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewSignal off\ shortLabel GM12878 ELAVL1 2\ subGroups view=Signal factor=ELAVL1 cellType=t1GM12878 rep=rep2\ track wgEncodeSunyRipSeqGm12878Elavl1SigRep2\ type bigWig 0.000000 55258.855469\ wgEncodeBroadHistoneGm12878H2azStdPk GM12878 H2A.Z broadPeak GM12878 H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 5 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel GM12878 H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H2azStdPk\ type broadPeak\ wgEncodeAffyRnaChipFiltTransfragsGm12878NucleusLongpolya GM12878 nucl pA+ broadPeak GM12878 nucleus polyA+ Microarray Transfrags from ENCODE Affy/CSHL 3 5 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleus polyA+ Microarray Transfrags from ENCODE Affy/CSHL\ noInherit on\ parent wgEncodeAffyRnaChipViewFiltTransfrags\ shortLabel GM12878 nucl pA+\ subGroups view=FiltTransfrags cellType=t1GM12878 localization=dNUCLEUS rnaExtract=longPolyA\ track wgEncodeAffyRnaChipFiltTransfragsGm12878NucleusLongpolya\ type broadPeak\ wgEncodeUwDnaseGm12878PkRep2 GM12878 Pk 2 narrowPeak GM12878 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 5 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks\ shortLabel GM12878 Pk 2\ subGroups view=Peaks cellType=t1GM12878 rep=rep2 treatment=None\ track wgEncodeUwDnaseGm12878PkRep2\ type narrowPeak\ wgEncodeUwRepliSeqGm12878S4PctSignalRep1 GM12878 S4 1 bigWig 1.000000 100.000000 GM12878 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 5 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel GM12878 S4 1\ subGroups view=v1PctSignal cellType=t1GM12878 phase=p5S4 rep=rep1\ track wgEncodeUwRepliSeqGm12878S4PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeSunyAlbanyGeneStGm12878SlbpRbpAssocRnaV2 GM12878 SLBP broadPeak GM12878 SLBP RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 5 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 SLBP RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt\ shortLabel GM12878 SLBP\ subGroups cellType=t1GM12878 factor=SLBP\ track wgEncodeSunyAlbanyGeneStGm12878SlbpRbpAssocRnaV2\ type broadPeak\ wgEncodeCaltechRnaSeqGm12878R2x75Il200SplicesRep1V2 GM78 2x75 Sp 1 bam GM12878 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 5 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel GM78 2x75 Sp 1\ subGroups view=Splices cellType=t1GM12878 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12878R2x75Il200SplicesRep1V2\ type bam\ wgEncodeHaibTfbsGm12878Atf3Pcr1xPkRep1 GM78 ATF3 PCR1 1 broadPeak GM12878 ATF3 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 5 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ATF3 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 ATF3 PCR1 1\ subGroups view=Peaks factor=ATF3 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Atf3Pcr1xPkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878Cdpsc6327IggmusPk GM78 CDP IgM narrowPeak GM12878 CDP (SC-6327) IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 5 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 CDP (SC-6327) IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 CDP IgM\ subGroups view=Peaks factor=CDPSC6327 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Cdpsc6327IggmusPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaMinusRawSigRep1 GM78 cel pA- - 1 bigWig 1.000000 993820.000000 GM12878 whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 5 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig on\ shortLabel GM78 cel pA- - 1\ subGroups view=MinusSignal cellType=t1GM12878 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 993820.000000\ wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapPlusRawRep2 GM78 cell TAP + 2 bigWig 1.000000 1645247.000000 GM12878 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 5 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel GM78 cell TAP + 2\ subGroups view=PlusSignal cellType=t1GM12878 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapPlusRawRep2\ type bigWig 1.000000 1645247.000000\ wgEncodeUwTfbsGm12878CtcfStdPkRep2 GM78 CTCF Pk 2 narrowPeak GM12878 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 5 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks on\ shortLabel GM78 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t1GM12878 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12878CtcfStdPkRep2\ type narrowPeak\ wgEncodeRikenCageGm12878CytosolPapTssHmm GM78 cyto pA+ bed 6 GM12878 cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 5 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel GM78 cyto pA+\ subGroups view=TssHmm cellType=t1GM12878 localization=cytosol rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageGm12878CytosolPapTssHmm\ type bed 6\ wgEncodeUwHistoneGm12878H3k4me3StdPkRep2 GM78 H3K4M3 Pk 2 narrowPeak GM12878 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 5 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks on\ shortLabel GM78 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t1GM12878 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm12878H3k4me3StdPkRep2\ type narrowPeak\ wgEncodeDukeAffyExonH1hescSimpleSignalRep2V2 H1-hESC 2 bigBed 6 + H1-hESC Exon array Signal Rep 2 from ENCODE/Duke 0 5 0 107 27 127 181 141 1 0 0 expression 1 color 0,107,27\ longLabel H1-hESC Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon\ shortLabel H1-hESC 2\ subGroups cellType=t1H1HESC treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonH1hescSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeUncBsuProtGencH1hescCellFasppepMapGcFt H1-hESC Ce F bigBed 12 H1-hESC FASP ProtG GENCODE11 Hg19 Mapping from ENCODE/UNC/BSU 2 5 0 107 27 127 181 141 1 0 0 expression 1 color 0,107,27\ longLabel H1-hESC FASP ProtG GENCODE11 Hg19 Mapping from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtGencViewpepMapGcFt\ shortLabel H1-hESC Ce F\ subGroups view=pepMapGcFt cellType=H1HESC localization=CELL protocol=FASP\ track wgEncodeUncBsuProtGencH1hescCellFasppepMapGcFt\ type bigBed 12\ wgEncodeAwgSegmentationCombinedH1hesc H1-hESC Combined bed 9 . H1-hESC Genome Segmentation by Combined Segway+ChromHMM from ENCODE/Analysis 0 5 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H1-hESC Genome Segmentation by Combined Segway+ChromHMM from ENCODE/Analysis\ parent wgEncodeAwgSegmentation on\ shortLabel H1-hESC Combined\ subGroups tier=t1 cellType=t1H1HESC method=Combined\ track wgEncodeAwgSegmentationCombinedH1hesc\ type bed 9 .\ wgEncodeOpenChromFaireH1hescSig H1-hESC FAIRE DS bigWig 0.000000 0.304500 H1-hESC FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 5 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal\ shortLabel H1-hESC FAIRE DS\ subGroups view=SIG cellType=t1H1HESC treatment=AANONE\ track wgEncodeOpenChromFaireH1hescSig\ type bigWig 0.000000 0.304500\ wgEncodeGisRnaSeqH1hescCellPapMinusRawRep1 H1ES cell pA+ - 1 bigWig 1.000000 52413.000000 H1-hESC whole cell polyA+ RNA-seq Minus raw signal rep 1 from ENCODE/GIS 2 5 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA+ RNA-seq Minus raw signal rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaSeqViewMinusRawSignal on\ shortLabel H1ES cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t1H1HESC rnaExtract=longPolyA rep=rep1 localization=cell\ track wgEncodeGisRnaSeqH1hescCellPapMinusRawRep1\ type bigWig 1.000000 52413.000000\ wgEncodeOpenChromDnaseH1hescSig H1hESC DS bigWig 0.000000 2.243700 H1-hESC DNaseI HS Density Signal from ENCODE/Duke 2 5 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal\ shortLabel H1hESC DS\ subGroups view=SIG cellType=t1H1HESC treatment=zNONE\ track wgEncodeOpenChromDnaseH1hescSig\ type bigWig 0.000000 2.243700\ hapmapSnpsGIH HapMap SNPs GIH bed 6 + HapMap SNPs from the GIH Population (Gujarati Indians in Houston, TX, US) 0 5 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HapMap SNPs from the GIH Population (Gujarati Indians in Houston, TX, US)\ parent hapmapSnps\ priority 5\ shortLabel HapMap SNPs GIH\ track hapmapSnpsGIH\ wgEncodeHaibMethyl450Helas3SitesRep1 HeLa-S3 bed 9 HeLa-S3 Methylation 450K Bead Array from ENCODE/HAIB 1 5 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HeLa-S3 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 on\ shortLabel HeLa-S3\ subGroups cellType=t2HELAS3 obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450Helas3SitesRep1\ type bed 9\ wgEncodeAwgDnaseUwdukeHelas3UniPk HeLa-S3 DNase narrowPeak HeLa-S3 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 5 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform on\ shortLabel HeLa-S3 DNase\ subGroups tier=a20 cellType=a20HeLa-S3\ track wgEncodeAwgDnaseUwdukeHelas3UniPk\ wgEncodeOpenChromSynthHelas3Pk HeLa-S3 Syn Pk bed 9 + HeLa-S3 DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom 0 5 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HeLa-S3 DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom\ parent wgEncodeOpenChromSynth off\ shortLabel HeLa-S3 Syn Pk\ subGroups cellType=t2HELAS3 treatment=aNone\ track wgEncodeOpenChromSynthHelas3Pk\ type bed 9 +\ wgEncodeRegTxnCaltechRnaSeqHsmmR2x75Il200SigPooled HSMM bigWig 0 65535 Transcription of HSMM cells from ENCODE 0 5 128 255 242 191 255 248 0 0 0 regulation 1 color 128,255,242\ longLabel Transcription of HSMM cells from ENCODE\ parent wgEncodeRegTxn\ priority 5\ shortLabel HSMM\ track wgEncodeRegTxnCaltechRnaSeqHsmmR2x75Il200SigPooled\ type bigWig 0 65535\ wgEncodeBroadHmmHuvecHMM HUVEC ChromHMM bed 9 . HUVEC Chromatin State Segmentation by HMM from ENCODE/Broad 0 5 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HUVEC Chromatin State Segmentation by HMM from ENCODE/Broad\ origAssembly hg18\ parent wgEncodeBroadHmm\ shortLabel HUVEC ChromHMM\ subGroups cellType=t2HUVEC\ track wgEncodeBroadHmmHuvecHMM\ type bed 9 .\ xGen_research_Targets_V2 IDT xGen V2.0 T bigBed IDT - xGen Exome Research Panel V2.0 Target Regions 1 5 255 176 0 255 215 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/xgen-exome-research-panel-v2-targets-hg19.bb\ color 255,176,0\ longLabel IDT - xGen Exome Research Panel V2.0 Target Regions\ parent exomeProbesets on\ shortLabel IDT xGen V2.0 T\ track xGen_research_Targets_V2\ type bigBed\ visibility dense\ wgEncodeFsuRepliChipImr90WaveSignalRep1 IMR90 1 bigWig -1.871862 1.569896 IMR90 Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU 0 5 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU\ parent wgEncodeFsuRepliChip\ shortLabel IMR90 1\ subGroups view=WaveSignal cellType=t2IMR90 rep=rep1\ track wgEncodeFsuRepliChipImr90WaveSignalRep1\ type bigWig -1.871862 1.569896\ wgEncodeRegMarkH3k4me1K562 K562 bigWig 0 5716 H3K4Me1 Mark (Often Found Near Regulatory Elements) on K562 Cells from ENCODE 0 5 128 128 255 191 191 255 0 0 0 regulation 1 color 128,128,255\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on K562 Cells from ENCODE\ parent wgEncodeRegMarkH3k4me1\ shortLabel K562\ table wgEncodeBroadHistoneK562H3k4me1StdSig\ track wgEncodeRegMarkH3k4me1K562\ type bigWig 0 5716\ wgEncodeRegMarkH3k4me3K562 K562 bigWig 0 9918 H3K4Me3 Mark (Often Found Near Promoters) on K562 Cells from ENCODE 0 5 128 128 255 191 191 255 0 0 0 regulation 1 color 128,128,255\ longLabel H3K4Me3 Mark (Often Found Near Promoters) on K562 Cells from ENCODE\ parent wgEncodeRegMarkH3k4me3\ shortLabel K562\ table wgEncodeBroadHistoneK562H3k4me3StdSig\ track wgEncodeRegMarkH3k4me3K562\ type bigWig 0 9918\ wgEncodeRegMarkH3k27acK562 K562 bigWig 0 6249 H3K27Ac Mark (Often Found Near Regulatory Elements) on K562 Cells from ENCODE 2 5 128 128 255 191 191 255 0 0 0 regulation 1 color 128,128,255\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on K562 Cells from ENCODE\ parent wgEncodeRegMarkH3k27ac\ shortLabel K562\ table wgEncodeBroadHistoneK562H3k27acStdSig\ track wgEncodeRegMarkH3k27acK562\ type bigWig 0 6249\ wgEncodeHaibMethylRrbsK562HaibSitesRep1 K562 1 bed 9 + K562 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 5 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs on\ shortLabel K562 1\ subGroups cellType=t1K562 obtainedBy=HAIB treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsK562HaibSitesRep1\ type bed 9 +\ wgEncodeGisDnaPetK562F10kAln K562 10k bam ENCODE GIS DNA PET Alignments (10k frags in K562 cells) 1 5 46 0 184 150 127 219 0 0 0 varRep 1 color 46,0,184\ longLabel ENCODE GIS DNA PET Alignments (10k frags in K562 cells)\ parent wgEncodeGisDnaPetViewAlignments on\ shortLabel K562 10k\ subGroups cellType=t1K562 fragSize=c10K\ track wgEncodeGisDnaPetK562F10kAln\ wgEncodeSunyAlbanyTilingK562Elavl1RbpAssocRna K562 ELAVL1 broadPeak K562 ELAVL1 RBP Associated RNA by Tiling Array from ENCODE/SUNY 3 5 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ELAVL1 RBP Associated RNA by Tiling Array from ENCODE/SUNY\ parent wgEncodeSunyAlbanyTilingView\ shortLabel K562 ELAVL1\ subGroups view=RbpAssocRna cellType=t1K562 antibody=ELAVL1\ track wgEncodeSunyAlbanyTilingK562Elavl1RbpAssocRna\ type broadPeak\ wgEncodeSydhHistoneK562H3k9acbUcdPk K562 H3K9ac narrowPeak K562 H3K9ac Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 5 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K9ac Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks on\ shortLabel K562 H3K9ac\ subGroups view=Peaks factor=H3K09acB cellType=aK562 control=UCD treatment=NONE\ track wgEncodeSydhHistoneK562H3k9acbUcdPk\ type narrowPeak\ wgEncodeUchicagoTfbsK562Ehdac8ControlPk K562 HDAC8/GFP Pk narrowPeak K562 HDAC8 GFP-tag TFBS Peaks from ENCODE/UChicago 3 5 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 HDAC8 GFP-tag TFBS Peaks from ENCODE/UChicago\ parent wgEncodeUchicagoTfbsPeaks\ shortLabel K562 HDAC8/GFP Pk\ subGroups view=Peaks factor=HDAC8 cellType=K562 control=ControlHDAC8 rep=repPOOLED\ track wgEncodeUchicagoTfbsK562Ehdac8ControlPk\ type narrowPeak\ k562Insitu K562 Hi-C hic In situ Hi-C Chromatin Structure on K562 0 5 0 0 0 127 127 127 0 0 0 regulation 1 bigDataUrl /gbdb/hg19/bbi/hic/GSE63525_K562_combined.hic\ longLabel In situ Hi-C Chromatin Structure on K562\ parent rao2014Hic off\ shortLabel K562 Hi-C\ track k562Insitu\ type hic\ wgEncodeUncBsuProtK562MembranefractionSig K562 membrane peptideMapping K562 Membrane Proteogenomic Hg19 Mapping Hits from ENCODE/UNC/BSU 2 5 46 0 184 150 127 219 1 0 0 expression 1 color 46,0,184\ longLabel K562 Membrane Proteogenomic Hg19 Mapping Hits from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtViewSignal\ shortLabel K562 membrane\ subGroups view=Signal cellType=t1K562 localization=membraneFraction protocol=INGEL\ track wgEncodeUncBsuProtK562MembranefractionSig\ type peptideMapping\ visibility full\ wgEncodeSydhRnaSeqK562Ifng30PolyaAln K562 pA+ Ng30 bam K562 polyA+ IFNg30 RNA-seq Alignments from ENCODE/SYDH 0 5 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 polyA+ IFNg30 RNA-seq Alignments from ENCODE/SYDH\ parent wgEncodeSydhRnaSeqViewAlignments off\ shortLabel K562 pA+ Ng30\ subGroups view=Alignments cellType=t1K562 rnaExtract=polyA treatment=IFNg30\ track wgEncodeSydhRnaSeqK562Ifng30PolyaAln\ type bam\ wgEncodeGisChiaPetK562Pol2InteractionsRep2 K562 Pol2 Int 2 bed 12 K562 Pol2 ChIA-PET Interactions Rep 2 from ENCODE/GIS-Ruan 2 5 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 Pol2 ChIA-PET Interactions Rep 2 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetInteractions off\ shortLabel K562 Pol2 Int 2\ subGroups view=Interactions factor=POL2 cellType=t1K562 rep=rep2\ track wgEncodeGisChiaPetK562Pol2InteractionsRep2\ type bed 12\ dbSnp153BadCoords Map Err dbSnp(153) bigBed 4 Mappings with Inconsistent Coordinates from dbSNP 153 1 5 100 100 100 177 177 177 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg19/snp/dbSnp153BadCoords.bb\ color 100,100,100\ longLabel Mappings with Inconsistent Coordinates from dbSNP 153\ parent dbSnp153ViewErrs off\ priority 5\ shortLabel Map Err dbSnp(153)\ subGroups view=errs\ track dbSnp153BadCoords\ type bigBed 4\ dbSnp155BadCoords Map Err dbSnp(155) bigBed 4 Mappings with Inconsistent Coordinates from dbSNP 155 1 5 100 100 100 177 177 177 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg19/snp/dbSnp155BadCoords.bb\ color 100,100,100\ longLabel Mappings with Inconsistent Coordinates from dbSNP 155\ parent dbSnp155ViewErrs off\ priority 5\ shortLabel Map Err dbSnp(155)\ subGroups view=errs\ track dbSnp155BadCoords\ type bigBed 4\ pgNb1 NB1 pgSnp NB1 Genome Variants (all SNPs, 2X genome plus 16x exome) 3 5 0 0 0 127 127 127 0 0 0 varRep 1 longLabel NB1 Genome Variants (all SNPs, 2X genome plus 16x exome)\ origAssembly hg18\ parent pgSnpPSU\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel NB1\ subGroups view=A_PSU id=AB_NB1 type=SNP\ track pgNb1\ getRmNgsProblemLow NCBI NGS Low Stringency bigBed 3 + NCBI GeT-RM NGS Problem List, Low Stringency 1 5 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/bbi/problematic/ngsProblemLow.bb\ longLabel NCBI GeT-RM NGS Problem List, Low Stringency\ parent problematic\ priority 5\ shortLabel NCBI NGS Low Stringency\ track getRmNgsProblemLow\ type bigBed 3 +\ visibility dense\ uMassBrainHistoneSignalS2NeuP0pt58yrsM NeuN+ 0.58yrs M bigWig UMMS Brain Histone H3K4me3 (NeuN+ D2) Gender-male Age-0.58 2 5 0 255 0 127 255 127 0 0 0 regulation 0 color 0,255,0\ longLabel UMMS Brain Histone H3K4me3 (NeuN+ D2) Gender-male Age-0.58\ parent uMassBrainHistoneViewSignal\ shortLabel NeuN+ 0.58yrs M\ subGroups view=Signal donor=c_2 cellType=norm sex=male age=a_infant\ track uMassBrainHistoneSignalS2NeuP0pt58yrsM\ type bigWig\ noAFmutA No MaxAF Mutation: A bigWig -1.29334 0.75731 BayesDel v1 Score (without MaxAF): Mutation is A 0 5 240 191 112 247 223 183 0 0 0

Description

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\ The "Prediction Scores" container track includes subtracks showing the results of prediction\ scores.

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BayesDel

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BayesDel is a deleteriousness meta-score for coding and non-coding variants, single nucleotide\ variants, and small insertion/deletions. The range of the score is from -1.29334 to 0.75731.\ The higher the score, the more likely the variant is pathogenic.

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\ For gene discovery research, a universal cutoff value (0.0692655 with MaxAF, -0.0570105 without\ MaxAF) was obtained by maximizing sensitivity and specificity in classifying ClinVar variants;\ Version 1 (build date 2017-08-24).

\

\ For clinical variant classification, Bayesdel thresholds have been calculated for a variant to\ reach various levels of evidence; please refer to Pejaver et al. 2022 for general application\ of these scores in clinical applications.\

\ \

Display Conventions and Configuration

\ \

BayesDel

\

There are eight subtracks for the BayesDel track: four include pre-computed MaxAF-integrated BayesDel\ scores for missense variants, one for each base. The other four are of the same format, but scores\ are not MaxAF-integrated.

\ \

For SNVs, at each genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing the reference allele,\ (e.g. A to A) is always set to zero.

\ \

Note: There are cases in which a genomic position will have one value missing.\

\ \

When using this track, zoom in until you can see every base pair at the top of the display.\ Otherwise, there are several nucleotides per pixel under your mouse cursor and instead of an actual\ score, the tooltip text will show the average score of all nucleotides under the cursor. This is\ indicated by the prefix "~" in the mouseover.\

\ \

Data Access

\

BayesDel scores are available at the\ BayesDel website.\ \

Methods

\

BayesDel data was converted from the files provided on the\ BayesDel_170824 Database.\ The number 170824 is the date (2017-08-24) the scores were created. Both sets of BayesDel scores are\ available in this database, one integrated MaxAF (named BayesDel_170824_addAF) and one without\ (named BayesDel_170824_noAF). Data conversion was performed using\ \ custom Python scripts.\

\ \

Credits

\

Thanks to the BayesDel team for providing precomputed data, and to Tiana Pereira, Christopher\ Lee, Gerardo Perez, and Anna Benet-Pages of the Genome Browser team.

\ \

References

\

\ Feng BJ.\ \ PERCH: A Unified Framework for Disease Gene Prioritization.\ Hum Mutat. 2017 Mar;38(3):243-251.\ PMID: 27995669; PMC: PMC5299048\

\ \

\ Pejaver V, Byrne AB, Feng BJ, Pagel KA, Mooney SD, Karchin R, O'Donnell-Luria A, Harrison SM,\ Tavtigian SV, Greenblatt MS et al.\ \ Calibration of computational tools for missense variant pathogenicity classification and ClinGen\ recommendations for PP3/BP4 criteria.\ Am J Hum Genet. 2022 Dec 1;109(12):2163-2177.\ PMID: 36413997; PMC: PMC9748256\

\ \

\ Tian Y, Pesaran T, Chamberlin A, Fenwick RB, Li S, Gau CL, Chao EC, Lu HM, Black MH, Qian D.\ \ REVEL and BayesDel outperform other in silico meta-predictors for clinical variant\ classification.\ Sci Rep. 2019 Sep 4;9(1):12752.\ PMID: 31484976; PMC: PMC6726608\

\ phenDis 0 bigDataUrl /gbdb/hg19/bayesDel/NoAFBayesDelMutA.bw\ color 240, 191, 112\ html predictionScoresSuper\ longLabel BayesDel v1 Score (without MaxAF): Mutation is A\ maxHeightPixels 128:20:8\ parent bayesDel on\ shortLabel No MaxAF Mutation: A\ track noAFmutA\ type bigWig -1.29334 0.75731\ visibility hide\ windowingFunction mean+whiskers\ bamAllNumtSSorted NumtS SNPs bam Human NumtS on Mitochondrion SNPs 3 5 0 0 0 127 127 127 0 0 1 chrM, rep 1 aliQualRange 0:255\ bamColorMode strand\ bamGrayMode aliQual\ bamSkipPrintQualScore .\ baseColorDefault diffBases\ baseColorUseSequence lfExtra\ chromosomes chrM\ configurable on\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Human NumtS on Mitochondrion SNPs\ maxWindowToDraw 1000000\ noColorTag .\ pairEndsByName on\ parent numtSeq\ priority 5\ shortLabel NumtS SNPs\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 100\ showNames on\ track bamAllNumtSSorted\ type bam\ visibility pack\ wgEncodeGencodePolyaV7 PolyA genePred PolyA Transcript Annotation Set from ENCODE/GENCODE Version 7 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from ENCODE/GENCODE Version 7\ parent wgEncodeGencodeV7ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV7\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV14 PolyA genePred PolyA Transcript Annotation Set from ENCODE/GENCODE Version 14 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from ENCODE/GENCODE Version 14\ parent wgEncodeGencodeV14ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV14\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV17 PolyA genePred PolyA Transcript Annotation Set from ENCODE/GENCODE Version 17 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from ENCODE/GENCODE Version 17\ parent wgEncodeGencodeV17ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV17\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV19 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 19 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 19\ parent wgEncodeGencodeV19ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV19\ trackHandler wgEncodeGencode\ type genePred\ polyASeqSitesLiverFwd PolyA-Seq Liver bigWig 0.180000 63606.449219 Poly(A)-tail sequencing of Liver from Merck (Fwd strand) 2 5 153 51 51 204 153 153 0 0 0 rna 0 color 153,51,51\ longLabel Poly(A)-tail sequencing of Liver from Merck (Fwd strand)\ parent polyASeqSitesSignalView\ shortLabel PolyA-Seq Liver\ subGroups view=Signal tissType=Liver strand=fwd\ track polyASeqSitesLiverFwd\ type bigWig 0.180000 63606.449219\ prsCorHeartDis PRS-E Cor Heart Dis bigBed 8 + Polygenic Risk Scores eMERGE: Coronary Heart Disease 1 5 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg19/prsEmerge/coronary_heart_disease.bb\ longLabel Polygenic Risk Scores eMERGE: Coronary Heart Disease\ parent prsEmerge pack\ shortLabel PRS-E Cor Heart Dis\ track prsCorHeartDis\ type bigBed 8 +\ ncbiRefSeqPsl RefSeq Alignments psl RefSeq Alignments of RNAs 1 5 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault diffCodons\ baseColorUseCds table ncbiRefSeqCds\ baseColorUseSequence extFile seqNcbiRefSeq extNcbiRefSeq\ color 0,0,0\ idXref ncbiRefSeqLink mrnaAcc name\ indelDoubleInsert on\ indelQueryInsert on\ longLabel RefSeq Alignments of RNAs\ parent refSeqComposite off\ pepTable ncbiRefSeqPepTable\ priority 5\ pslSequence no\ shortLabel RefSeq Alignments\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ track ncbiRefSeqPsl\ type psl\ revelOverlaps REVEL overlaps bigBed 9 + REVEL: Positions with >1 score due to overlapping transcripts (mouseover for details) 1 5 150 80 200 202 167 227 0 0 0 https://www.ensembl.org/homo_sapiens/Transcript/Summary?t=$&db=core phenDis 1 bigDataUrl /gbdb/hg19/revel/overlap.bb\ extraTableFields _jsonTable|Title\ longLabel REVEL: Positions with >1 score due to overlapping transcripts (mouseover for details)\ mouseOver REVEL score=${revelScore} for transcript(s): ${transcriptId}\ mouseOverField mouseOver\ parent revel on\ shortLabel REVEL overlaps\ track revelOverlaps\ type bigBed 9 +\ url https://www.ensembl.org/homo_sapiens/Transcript/Summary?t=$&db=core\ urlLabel Link to Ensembl Transcript View\ visibility dense\ ucsfRnaSeqBrainAllCoverage RNA-seq RawSignal bigWig 1 24184 RNA-seq Raw Signal 2 5 0 0 200 100 0 0 0 0 0 regulation 0 altColor 100,0,0\ autoScale on\ color 0,0,200\ configurable on\ longLabel RNA-seq Raw Signal\ maxHeightPixels 128:32:16\ noInherit on\ parent ucsfBrainMethylViewCOV\ priority 8\ shortLabel RNA-seq RawSignal\ subGroups view=COV sampleType=Brain assayType=RNA1\ track ucsfRnaSeqBrainAllCoverage\ type bigWig 1 24184\ yLineOnOff on\ burgeRnaSeqGemMapperAlignT47D RNA-seq T47D bed 12 Burge Lab RNA-seq 32mer Reads from T-47D Breast Ductal Carcinoma Cell Line 1 5 12 12 120 133 133 187 0 0 0 expression 1 longLabel Burge Lab RNA-seq 32mer Reads from T-47D Breast Ductal Carcinoma Cell Line\ parent burgeRnaSeqGemMapperAlignViewAlignments off\ shortLabel RNA-seq T47D\ subGroups view=Alignments tissueType=T47D\ track burgeRnaSeqGemMapperAlignT47D\ gnomadGenomes20XPercentage Sample % > 20X bigWig 0 1 gnomAD Percentage of Genome Samples with at least 20X Coverage 0 5 135 0 120 195 127 187 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.genomes.coverage.depth20.bw\ color 135,0,120\ longLabel gnomAD Percentage of Genome Samples with at least 20X Coverage\ parent gnomadGenomesReadDepthPct on\ priority 5\ shortLabel Sample % > 20X\ subGroups view=gRDepth\ track gnomadGenomes20XPercentage\ gnomadExomes20XPercentage Sample % > 20X bigWig 0 1 gnomAD Percentage of Exome Samples with at least 20X Coverage 0 5 135 0 120 195 127 187 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.exomes.coverage.depth20.bw\ color 135,0,120\ longLabel gnomAD Percentage of Exome Samples with at least 20X Coverage\ parent gnomadExomesReadDepthPct on\ priority 5\ shortLabel Sample % > 20X\ subGroups view=eRDepth\ track gnomadExomes20XPercentage\ dhcVcfHGDP00665 Sardin. Variants vcfTabix Sardinian Individual (HGDP00665) Variant Calls 0 5 0 0 0 127 127 127 0 0 0 denisova 1 longLabel Sardinian Individual (HGDP00665) Variant Calls\ parent dhcVcfModern\ priority 5\ shortLabel Sardin. Variants\ track dhcVcfHGDP00665\ vcfDoMaf off\ hiSeqDepthTop10Pct Top 0.10 Depth bed 3 Top 0.10 of Read Depth Distribution 0 5 139 69 19 197 162 137 0 0 0 map 1 longLabel Top 0.10 of Read Depth Distribution\ parent hiSeqDepth\ priority 5\ shortLabel Top 0.10 Depth\ track hiSeqDepthTop10Pct\ unipLocTransMemb Transmembrane bigBed 12 + UniProt Transmembrane Domains 1 5 0 150 0 127 202 127 0 0 0 genes 1 bigDataUrl /gbdb/hg19/uniprot/unipLocTransMemb.bb\ color 0,150,0\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ itemRgb off\ longLabel UniProt Transmembrane Domains\ parent uniprot\ priority 5\ shortLabel Transmembrane\ track unipLocTransMemb\ type bigBed 12 +\ visibility dense\ iscaLikelyBenign Uncert Ben gvf ClinGen CNVs: Uncertain: Likely Benign 3 5 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/?term=$$ phenDis 1 longLabel ClinGen CNVs: Uncertain: Likely Benign\ parent iscaViewDetail off\ shortLabel Uncert Ben\ subGroups view=cnv class=likB level=sub\ track iscaLikelyBenign\ bamSLVi33dot25 Vi33.25 Sequence bam Vi33.25 Sequence Reads 0 5 0 0 0 127 127 127 0 0 0 neandertal 1 longLabel Vi33.25 Sequence Reads\ parent ntSeqReads\ shortLabel Vi33.25 Sequence\ subGroups sample=Vi33dot25\ track bamSLVi33dot25\ mrna Human mRNAs psl . Human mRNAs from GenBank 0 5.1 0 0 0 127 127 127 1 0 0

Description

\ \

\ The mRNA track shows alignments between human mRNAs\ in \ GenBank and the genome.

\ \

Display Conventions and Configuration

\ \

\ This track follows the display conventions for\ \ PSL alignment tracks. In dense display mode, the items that\ are more darkly shaded indicate matches of better quality.\

\ \

\ The description page for this track has a filter that can be used to change\ the display mode, alter the color, and include/exclude a subset of items\ within the track. This may be helpful when many items are shown in the track\ display, especially when only some are relevant to the current task.\

\ \

\ To use the filter:\

    \
  1. Type a term in one or more of the text boxes to filter the mRNA\ display. For example, to apply the filter to all mRNAs expressed in a specific\ organ, type the name of the organ in the tissue box. To view the list of\ valid terms for each text box, consult the table in the Table Browser that\ corresponds to the factor on which you wish to filter. For example, the\ "tissue" table contains all the types of tissues that can be\ entered into the tissue text box. Multiple terms may be entered at once,\ separated by a space. Wildcards may also be used in the filter.
    2. \
  2. If filtering on more than one value, choose the desired combination\ logic. If "and" is selected, only mRNAs that match all filter\ criteria will be highlighted. If "or" is selected, mRNAs that\ match any one of the filter criteria will be highlighted.
    3. \
  3. Choose the color or display characteristic that should be used to\ highlight or include/exclude the filtered items. If "exclude" is\ chosen, the browser will not display mRNAs that match the filter criteria.\ If "include" is selected, the browser will display only those\ mRNAs that match the filter criteria.
    4. \
\

\ \

\ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare mRNAs against the genomic sequence. For more\ information about this option, go to the\ \ Codon and Base Coloring for Alignment Tracks page.\ Several types of alignment gap may also be colored;\ for more information, go to the\ \ Alignment Insertion/Deletion Display Options page.\

\ \

Methods

\ \

\ GenBank human mRNAs were aligned against the genome using the\ blat program. When a single mRNA aligned in multiple places,\ the alignment having the highest base identity was found.\ Only alignments having a base identity level within 0.5% of\ the best and at least 96% base identity with the genomic sequence were kept.\

\ \

Credits

\ \

\ The mRNA track was produced at UCSC from mRNA sequence data\ submitted to the international public sequence databases by\ scientists worldwide.\

\ \

References

\

\ Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW.\ \ GenBank.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42.\ PMID: 23193287; PMC: PMC3531190\

\ \

\ Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\ GenBank: update.\ Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6.\ PMID: 14681350; PMC: PMC308779\

\ \

\ Kent WJ.\ BLAT - the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

\ rna 1 baseColorDefault diffCodons\ baseColorUseCds genbank\ baseColorUseSequence genbank\ group rna\ indelDoubleInsert on\ indelPolyA on\ indelQueryInsert on\ longLabel Human mRNAs from GenBank\ priority 5.1\ shortLabel Human mRNAs\ showDiffBasesAllScales .\ spectrum on\ table all_mrna\ track mrna\ type psl .\ visibility hide\ netOrnAna1 Platypus Net netAlign ornAna1 chainOrnAna1 Platypus (Mar. 2007 (WUGSC 5.0.1/ornAna1)) Alignment Net 1 6 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Platypus (Mar. 2007 (WUGSC 5.0.1/ornAna1)) Alignment Net\ otherDb ornAna1\ parent vertebrateChainNetViewnet off\ shortLabel Platypus Net\ subGroups view=net species=s005 clade=c00\ track netOrnAna1\ type netAlign ornAna1 chainOrnAna1\ netPonAbe2 Orangutan Net netAlign ponAbe2 chainPonAbe2 Orangutan (July 2007 (WUGSC 2.0.2/ponAbe2)) Alignment Net 1 6 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Orangutan (July 2007 (WUGSC 2.0.2/ponAbe2)) Alignment Net\ otherDb ponAbe2\ parent primateChainNetViewnet off\ shortLabel Orangutan Net\ subGroups view=net species=s013b clade=c00\ track netPonAbe2\ type netAlign ponAbe2 chainPonAbe2\ netMm10 Mouse Net netAlign mm10 chainMm10 Mouse (Dec. 2011 (GRCm38/mm10)) Alignment Net 1 6 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Mouse (Dec. 2011 (GRCm38/mm10)) Alignment Net\ otherDb mm10\ parent placentalChainNetViewnet on\ shortLabel Mouse Net\ subGroups view=net species=s012a clade=c00\ track netMm10\ type netAlign mm10 chainMm10\ encTfChipPkENCFF231RXA A549 CHD4 narrowPeak Transcription Factor ChIP-seq Peaks of CHD4 in A549 from ENCODE 3 (ENCFF231RXA) 1 6 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CHD4 in A549 from ENCODE 3 (ENCFF231RXA)\ parent encTfChipPk off\ shortLabel A549 CHD4\ subGroups cellType=A549 factor=CHD4\ track encTfChipPkENCFF231RXA\ wgEncodeHaibRnaSeqA549Dex100pmAlnRep1 A549 DEX100pM 1 bam A549 DEX 1 hr 100 pM RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 6 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 DEX 1 hr 100 pM RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel A549 DEX100pM 1\ subGroups view=Alignments cellType=t2A549 treatment=DEX100PM rep=rep1\ track wgEncodeHaibRnaSeqA549Dex100pmAlnRep1\ type bam\ wgEncodeUwDgfA549Pk A549 Pk narrowPeak A549 DNaseI DGF Peaks from ENCODE/UW 0 6 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel A549 Pk\ subGroups view=Peaks cellType=t2A549 treatment=aNONE rep=rep1\ track wgEncodeUwDgfA549Pk\ type narrowPeak\ affyCytoScan Affy CytoScan bed 9 . Affymetrix Cytoscan CNV and SNP Array Probeset 0 6 0 0 0 127 127 127 0 0 0 varRep 1 itemRgb on\ longLabel Affymetrix Cytoscan CNV and SNP Array Probeset\ parent genotypeArrays\ priority 6\ shortLabel Affy CytoScan\ track affyCytoScan\ type bed 9 .\ affyU133Plus2 Affy U133Plus2 psl . Alignments of Affymetrix Consensus/Exemplars from HG-U133 Plus 2.0 0 6 0 0 0 127 127 127 0 0 0

Description

\

\ This track shows the location of the consensus and exemplar sequences used \ for the selection of probes on the Affymetrix HG-U133 Plus 2.0 chip.

\ \

Methods

\

\ Consensus and exemplar sequences were downloaded from the\ Affymetrix Product Support\ and mapped to the genome using blat followed by pslReps with the \ parameters: 

   -minCover=0.3 -minAli=0.95 -nearTop=0.005\

\ \

Credits

\ Thanks to \ Affymetrix for the data underlying this track.

\ expression 1 group expression\ html ../affyU133Plus2\ longLabel Alignments of Affymetrix Consensus/Exemplars from HG-U133 Plus 2.0\ parent affyArchive\ priority 6\ shortLabel Affy U133Plus2\ track affyU133Plus2\ type psl .\ visibility hide\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep1LK4_CNhs13340_ctss_rev AorticSmsToFgf2_00hr15minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep1 (LK4)_CNhs13340_12643-134G6_reverse 0 6 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12643-134G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep1%20%28LK4%29.CNhs13340.12643-134G6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep1 (LK4)_CNhs13340_12643-134G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12643-134G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep1LK4_CNhs13340_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12643-134G6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep1LK4_CNhs13340_tpm_rev AorticSmsToFgf2_00hr15minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep1 (LK4)_CNhs13340_12643-134G6_reverse 1 6 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12643-134G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep1%20%28LK4%29.CNhs13340.12643-134G6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep1 (LK4)_CNhs13340_12643-134G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12643-134G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep1LK4_CNhs13340_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12643-134G6\ urlLabel FANTOM5 Details:\ gtexEqtlTissueArteryTibial arteryTibial bed 9 + Expression QTL in Artery_Tibial from GTEx V6 0 6 255 0 0 255 127 127 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 255,0,0\ idInUrlSql select gene from gtexEqtlTissueArteryTibial where name='%s'\ longLabel Expression QTL in Artery_Tibial from GTEx V6\ parent gtexEqtlTissue on\ shortLabel arteryTibial\ track gtexEqtlTissueArteryTibial\ wgEncodeFsuRepliChipBg02esWaveSignalRep1 BG02ES 1 bigWig -1.779521 1.617028 BG02ES Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU 0 6 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BG02ES Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU\ parent wgEncodeFsuRepliChip off\ shortLabel BG02ES 1\ subGroups view=WaveSignal cellType=t3BG02ES rep=rep1\ track wgEncodeFsuRepliChipBg02esWaveSignalRep1\ type bigWig -1.779521 1.617028\ dhcHumDerDenAncCcdsFrameshiftCodingHighFreq CC FrShft HiF bigBed 4 + Modern Human Derived (HighFreq), Denisova Ancestral: CCDS Frameshift Coding 3 6 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (HighFreq), Denisova Ancestral: CCDS Frameshift Coding\ parent dhcHumDerDenAncCcds\ shortLabel CC FrShft HiF\ subGroups view=Ccds subset=CcdsFrameshiftCoding freq=HighFreq\ track dhcHumDerDenAncCcdsFrameshiftCodingHighFreq\ lincRNAsCTColon Colon bed 5 + lincRNAs from colon 1 6 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from colon\ parent lincRNAsAllCellType on\ shortLabel Colon\ subGroups view=lincRNAsRefseqExp tissueType=colon\ track lincRNAsCTColon\ wgEncodeCrgMapabilityAlign100mer CRG Align 100 bigWig 0.00 1.00 Alignability of 100mers by GEM from ENCODE/CRG(Guigo) 0 6 0 100 0 127 177 127 0 0 0 map 1 color 0,100,0\ longLabel Alignability of 100mers by GEM from ENCODE/CRG(Guigo)\ origAssembly hg19\ parent wgEncodeMapabilityViewCRGMAP off\ shortLabel CRG Align 100\ subGroups view=CRGMAP win=w100 lab=CRG\ track wgEncodeCrgMapabilityAlign100mer\ type bigWig 0.00 1.00\ unipLocCytopl Cytoplasmic bigBed 12 + UniProt Cytoplasmic Domains 1 6 255 150 0 255 202 127 0 0 0 genes 1 bigDataUrl /gbdb/hg19/uniprot/unipLocCytopl.bb\ color 255,150,0\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ itemRgb off\ longLabel UniProt Cytoplasmic Domains\ parent uniprot\ priority 6\ shortLabel Cytoplasmic\ track unipLocCytopl\ type bigBed 12 +\ visibility dense\ dbVar_common_gnomad dbVar Curated gnomAD SVs bigBed 9 + . NCBI dbVar Curated Common SVs: all populations from gnomAD 3 6 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg19/bbi/dbVar/common_gnomad.bb\ longLabel NCBI dbVar Curated Common SVs: all populations from gnomAD\ parent dbVar_common on\ shortLabel dbVar Curated gnomAD SVs\ track dbVar_common_gnomad\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ decodeFemaleNonCarrier Female Non-carry bigWig 0.0 93.929 deCODE recombination map, female non-carrier 0 6 148 128 200 201 191 227 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 0 color 148,128,200\ configurable on\ longLabel deCODE recombination map, female non-carrier\ parent femaleView\ priority 6\ shortLabel Female Non-carry\ subGroups view=female\ track decodeFemaleNonCarrier\ type bigWig 0.0 93.929\ affyExonProbeFull Full Probes bed 10 Affymetrix Human Exon Array Full Probes 1 6 205 96 144 230 175 199 0 0 0 expression 1 color 205,96,144\ longLabel Affymetrix Human Exon Array Full Probes\ parent affyExonProbe off\ shortLabel Full Probes\ subGroups view=v2Probe level=L3Full\ track affyExonProbeFull\ type bed 10\ geneHancerGenes GH genes TSS bigBed 9 GH genes TSS 3 6 0 0 0 127 127 127 0 0 0 http://www.genecards.org/cgi-bin/carddisp.pl?gene=$$ regulation 1 bigDataUrl /gbdb/hg19/geneHancer/geneHancerGenesTssAll.hg19.bb\ longLabel GH genes TSS\ parent ghGeneTss off\ shortLabel GH genes TSS\ subGroups set=b_ALL view=b_TSS\ track geneHancerGenes\ type bigBed 9\ urlLabel In GeneCards:\ wgEncodeGisRnaPetGm12878NucleusPapMinusRawSigRep1 GM12 nucl pA+ - 1 bigWig 1.000000 618340.000000 GM12878 nucleus polyA+ clone-free RNA PET Minus signal Rep 1 from ENCODE/GIS 2 6 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleus polyA+ clone-free RNA PET Minus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel GM12 nucl pA+ - 1\ subGroups view=v2MinusRawSignal cellType=aGM12878 cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetGm12878NucleusPapMinusRawSigRep1\ type bigWig 1.000000 618340.000000\ wgEncodeAwgTfbsHaibGm12878Bclaf101388V0416101UniPk GM12878 BCLAF1 narrowPeak GM12878 TFBS Uniform Peaks of BCLAF1_(SC-101388) ENCODE/HudsonAlpha/Analysis 1 6 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of BCLAF1_(SC-101388) ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 BCLAF1\ subGroups tier=a10 cellType=a10GM12878 factor=BCLAF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Bclaf101388V0416101UniPk\ wgEncodeOpenChromChipGm12878CtcfBaseOverlapSignal GM12878 CTCF OS bigWig 0.000000 1544.000000 GM12878 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 6 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo\ shortLabel GM12878 CTCF OS\ subGroups treatment=AANONE view=SIGBO factor=CTCF cellType=t1GM12878\ track wgEncodeOpenChromChipGm12878CtcfBaseOverlapSignal\ type bigWig 0.000000 1544.000000\ wgEncodeUwRepliSeqGm12878G2PctSignalRep1 GM12878 G2 1 bigWig 1.000000 100.000000 GM12878 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 6 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel GM12878 G2 1\ subGroups view=v1PctSignal cellType=t1GM12878 phase=p6G2 rep=rep1\ track wgEncodeUwRepliSeqGm12878G2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeBroadHistoneGm12878H2azStdSig GM12878 H2A.Z bigWig 0.040000 5573.080078 GM12878 H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 6 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel GM12878 H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H2azStdSig\ type bigWig 0.040000 5573.080078\ wgEncodeAffyRnaChipFiltTransfragsGm12878NucleolusTotal GM12878 nlus tot broadPeak GM12878 nucleolus total Microarray Transfrags from ENCODE Affy/CSHL 3 6 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleolus total Microarray Transfrags from ENCODE Affy/CSHL\ parent wgEncodeAffyRnaChipViewFiltTransfrags on\ shortLabel GM12878 nlus tot\ subGroups view=FiltTransfrags cellType=t1GM12878 localization=gNUCLEOLUS rnaExtract=total\ track wgEncodeAffyRnaChipFiltTransfragsGm12878NucleolusTotal\ type broadPeak\ wgEncodeSunyRipSeqGm12878Pabpc1AlnRep1 GM12878 PABPC1 1 bam GM12878 PABPC1 RIP-seq Alignments Rep 1 from ENCODE/SUNY 0 6 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 PABPC1 RIP-seq Alignments Rep 1 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewAlignments off\ shortLabel GM12878 PABPC1 1\ subGroups view=Alignments factor=PABPC1 cellType=t1GM12878 rep=rep1\ track wgEncodeSunyRipSeqGm12878Pabpc1AlnRep1\ type bam\ wgEncodeUwDnaseGm12878RawRep2 GM12878 Sg 2 bigWig 1.000000 18952.000000 GM12878 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 6 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw\ shortLabel GM12878 Sg 2\ subGroups view=zRSig cellType=t1GM12878 rep=rep2 treatment=None\ track wgEncodeUwDnaseGm12878RawRep2\ type bigWig 1.000000 18952.000000\ wgEncodeSunyAlbanyGeneStGm12878T7tagRbpAssocRnaV2 GM12878 T7Tag broadPeak GM12878 T7Tag RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 6 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 T7Tag RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt off\ shortLabel GM12878 T7Tag\ subGroups cellType=t1GM12878 factor=T7Tag\ track wgEncodeSunyAlbanyGeneStGm12878T7tagRbpAssocRnaV2\ type broadPeak\ wgEncodeCaltechRnaSeqGm12878R2x75Il200SplicesRep2V2 GM78 2x75 Sp 2 bam GM12878 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 6 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel GM78 2x75 Sp 2\ subGroups view=Splices cellType=t1GM12878 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12878R2x75Il200SplicesRep2V2\ type bam\ wgEncodeHaibTfbsGm12878Atf3Pcr1xRawRep1 GM78 ATF3 PCR1 1 bigWig 0.265103 427.545990 GM12878 ATF3 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 6 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ATF3 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 ATF3 PCR1 1\ subGroups view=RawSignal factor=ATF3 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Atf3Pcr1xRawRep1\ type bigWig 0.265103 427.545990\ wgEncodeSydhTfbsGm12878Cdpsc6327IggmusSig GM78 CDP IgM bigWig 1.000000 12658.000000 GM12878 CDP (SC-6327) IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 6 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 CDP (SC-6327) IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 CDP IgM\ subGroups view=Signal factor=CDPSC6327 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Cdpsc6327IggmusSig\ type bigWig 1.000000 12658.000000\ wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaMinusRawSigRep2 GM78 cel pA- - 2 bigWig 1.000000 2788978.000000 GM12878 whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 6 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig on\ shortLabel GM78 cel pA- - 2\ subGroups view=MinusSignal cellType=t1GM12878 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 2788978.000000\ wgEncodeCshlShortRnaSeqGm12878ChromatinTapContigs GM78 chrm TAP C bed 6 GM12878 TAP-only chromatin small RNA-seq Contigs from ENCODE/CSHL 2 6 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 TAP-only chromatin small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel GM78 chrm TAP C\ subGroups view=Contigs rep=Pooled cellType=t1GM12878 localization=CHROMATIN protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqGm12878ChromatinTapContigs\ type bed 6\ wgEncodeUwTfbsGm12878CtcfStdRawRep2 GM78 CTCF Sg 2 bigWig 1.000000 7099.000000 GM12878 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 6 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig on\ shortLabel GM78 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t1GM12878 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12878CtcfStdRawRep2\ type bigWig 1.000000 7099.000000\ wgEncodeRikenCageGm12878CytosolPapPlusSignalRep1 GM78 cyto pA+ + 1 bigWig 1.000000 178047.000000 GM12878 cytosol polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 6 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 cytosol polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel GM78 cyto pA+ + 1\ subGroups view=PlusRawSignal cellType=t1GM12878 localization=cytosol rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageGm12878CytosolPapPlusSignalRep1\ type bigWig 1.000000 178047.000000\ wgEncodeUwHistoneGm12878H3k4me3StdRawRep2 GM78 H3K4M3 Sg 2 bigWig 1.000000 2040.000000 GM12878 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 6 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig f on\ shortLabel GM78 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t1GM12878 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm12878H3k4me3StdRawRep2\ type bigWig 1.000000 2040.000000\ wgEncodeDukeAffyExonH1hescSimpleSignalRep3V2 H1-hESC 3 bigBed 6 + H1-hESC Exon array Signal Rep 3 from ENCODE/Duke 0 6 0 107 27 127 181 141 1 0 0 expression 1 color 0,107,27\ longLabel H1-hESC Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel H1-hESC 3\ subGroups cellType=t1H1HESC treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonH1hescSimpleSignalRep3V2\ type bigBed 6 +\ wgEncodeUncBsuProtGencH1hescCellFaspmPepMapGcFt H1-hESC Ce PTM bigBed 12 H1-hESC FASP ProtG GENCODE11 Hg19 PTM Mapping from ENCODE/UNC/BSU 2 6 0 107 27 127 181 141 1 0 0 expression 1 color 0,107,27\ longLabel H1-hESC FASP ProtG GENCODE11 Hg19 PTM Mapping from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtGencViewmPepMapGcFt\ shortLabel H1-hESC Ce PTM\ subGroups view=mPepMapGcFt cellType=H1HESC localization=CELL protocol=FASP\ track wgEncodeUncBsuProtGencH1hescCellFaspmPepMapGcFt\ type bigBed 12\ wgEncodeOpenChromFaireH1hescBaseOverlapSignal H1-hESC FAIRE OS bigWig 0.000000 1584.000000 H1-hESC FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 6 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo\ shortLabel H1-hESC FAIRE OS\ subGroups view=SIGBO cellType=t1H1HESC treatment=AANONE\ track wgEncodeOpenChromFaireH1hescBaseOverlapSignal\ type bigWig 0.000000 1584.000000\ wgEncodeAwgSegmentationSegwayH1hesc H1-hESC Segway bed 9 . H1-hESC Genome Segmentation by Segway from ENCODE/Analysis 0 6 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H1-hESC Genome Segmentation by Segway from ENCODE/Analysis\ parent wgEncodeAwgSegmentation off\ shortLabel H1-hESC Segway\ subGroups tier=t1 cellType=t1H1HESC method=Segway\ track wgEncodeAwgSegmentationSegwayH1hesc\ type bed 9 .\ wgEncodeGisRnaSeqH1hescCellPapPlusRawRep1 H1ES cell pA+ + 1 bigWig 1.000000 46751.000000 H1-hESC whole cell polyA+ RNA-seq Plus raw signal rep 1 from ENCODE/GIS 2 6 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA+ RNA-seq Plus raw signal rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaSeqViewPlusRawSignal on\ shortLabel H1ES cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t1H1HESC rnaExtract=longPolyA rep=rep1 localization=cell\ track wgEncodeGisRnaSeqH1hescCellPapPlusRawRep1\ type bigWig 1.000000 46751.000000\ wgEncodeOpenChromDnaseH1hescBaseOverlapSignal H1hESC OS bigWig 0.000000 264.000000 H1-hESC DNaseI HS Overlap Signal from ENCODE/Duke 2 6 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo\ shortLabel H1hESC OS\ subGroups view=SIGBO cellType=t1H1HESC treatment=zNONE\ track wgEncodeOpenChromDnaseH1hescBaseOverlapSignal\ type bigWig 0.000000 264.000000\ dhcVcfHGDP00778 Han Variants vcfTabix Han Individual (HGDP00778) Variant Calls 0 6 0 0 0 127 127 127 0 0 0 denisova 1 longLabel Han Individual (HGDP00778) Variant Calls\ parent dhcVcfModern\ priority 6\ shortLabel Han Variants\ track dhcVcfHGDP00778\ vcfDoMaf off\ hapmapSnpsJPT HapMap SNPs JPT bed 6 + HapMap SNPs from the JPT Population (Japanese in Tokyo, Japan) 0 6 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HapMap SNPs from the JPT Population (Japanese in Tokyo, Japan)\ parent hapmapSnps\ priority 6\ shortLabel HapMap SNPs JPT\ track hapmapSnpsJPT\ wgEncodeHaibGenotypeHelas3RegionsRep2 HeLa-S3 1 bed 9 + HeLa-S3 Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB 0 6 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HeLa-S3 Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB\ parent wgEncodeHaibGenotype on\ shortLabel HeLa-S3 1\ subGroups cellType=t2HELAS3 obtainedBy=HudsonAlpha treatment=None rep=rep1\ track wgEncodeHaibGenotypeHelas3RegionsRep2\ type bed 9 +\ wgEncodeUwAffyExonArrayHelas3SimpleSignalRep1 HeLa-S3 1 broadPeak HeLa-S3 Exon array Signal Rep 1 from ENCODE/UW 0 6 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HeLa-S3 1\ subGroups cellType=t2HELAS3 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHelas3SimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethyl450Hepg2SitesRep1 HepG2 bed 9 HepG2 Methylation 450K Bead Array from ENCODE/HAIB 1 6 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HepG2 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 on\ shortLabel HepG2\ subGroups cellType=t2HEPG2 obtainedBy=HAIB treatment=zNONE\ track wgEncodeHaibMethyl450Hepg2SitesRep1\ type bed 9\ wgEncodeAwgDnaseUwdukeHepg2UniPk HepG2 DNase narrowPeak HepG2 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 6 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform on\ shortLabel HepG2 DNase\ subGroups tier=a20 cellType=a20HepG2\ track wgEncodeAwgDnaseUwdukeHepg2UniPk\ wgEncodeOpenChromSynthHepg2Pk HepG2 Syn Pk bed 9 + HepG2 DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom 0 6 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HepG2 DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom\ parent wgEncodeOpenChromSynth off\ shortLabel HepG2 Syn Pk\ subGroups cellType=t2HEPG2 treatment=aNone\ track wgEncodeOpenChromSynthHepg2Pk\ type bed 9 +\ wgEncodeBroadHmmHmecHMM HMEC ChromHMM bed 9 . HMEC Chromatin State Segmentation by HMM from ENCODE/Broad 0 6 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC Chromatin State Segmentation by HMM from ENCODE/Broad\ origAssembly hg18\ parent wgEncodeBroadHmm\ shortLabel HMEC ChromHMM\ subGroups cellType=t3HMEC\ track wgEncodeBroadHmmHmecHMM\ type bed 9 .\ darned Human RNA Editing bed 9 Human RNA Editing from the DAtabase of RNa EDiting 0 6 0 0 0 127 127 127 0 0 0

Description

\

\ This track provides information on RNA nucleotides that are edited after transcription and their \ corresponding genomic coordinates. Only post-transcriptional editing that results in small changes \ to the identity of a nucleic acid are included in this track; it does not include other RNA \ processing such as splicing or methylation. The track contains information on A-to-I \ (adenosine-to-inosine) and C-to-U (cytidine-to-uridine) editing that occur due to deamination by \ ADAR and APOBEC enzymes, respectively. Most of the data in this track are on A-to-I editing, which \ is known to be highly abundant in humans.\

\ \

Display

\

\ Track items are colored depending on their occurrence within RNA transcripts:\

\
    \
  • Dark Green: 5' UTR
    • \
  • Blue: CDS
    • \
  • Red: Intron
    • \
  • Deep Pink: 3' UTR
    • \
  • Black: Other (exon/intron status is unclear or unknown)
    • \
\ \

Methods

\

\ The data were obtained from several research papers on RNA editing and were mapped to the \ reference genome. More information can be obtained from DARNED database.

\ \

References:

\

\ Kiran A, Baranov PV.\ \ DARNED: a DAtabase of RNa EDiting in humans.\ Bioinformatics. 2010 Jul 15;26(14):1772-6.\ PMID: 20547637\

\ rna 1 group rna\ itemRgb on\ longLabel Human RNA Editing from the DAtabase of RNa EDiting\ noScoreFilter .\ priority 6\ shortLabel Human RNA Editing\ track darned\ type bed 9\ visibility hide\ wgEncodeRegTxnCaltechRnaSeqHuvecR2x75Il200SigPooled HUVEC bigWig 0 65535 Transcription of HUVEC cells from ENCODE 0 6 128 199 255 191 227 255 0 0 0 regulation 1 color 128,199,255\ longLabel Transcription of HUVEC cells from ENCODE\ parent wgEncodeRegTxn\ priority 6\ shortLabel HUVEC\ track wgEncodeRegTxnCaltechRnaSeqHuvecR2x75Il200SigPooled\ type bigWig 0 65535\ wgEncodeHaibMethylRrbsK562HaibSitesRep2 K562 2 bed 9 + K562 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 6 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel K562 2\ subGroups cellType=t1K562 obtainedBy=HAIB treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsK562HaibSitesRep2\ type bed 9 +\ wgEncodeGisDnaPetK562F20kAln K562 20k bam ENCODE GIS DNA PET Alignments (20k frags in K562 cells) 1 6 46 0 184 150 127 219 0 0 0 varRep 1 color 46,0,184\ longLabel ENCODE GIS DNA PET Alignments (20k frags in K562 cells)\ parent wgEncodeGisDnaPetViewAlignments off\ shortLabel K562 20k\ subGroups cellType=t1K562 fragSize=d20K\ track wgEncodeGisDnaPetK562F20kAln\ wgEncodeSydhHistoneK562H3k9acbUcdSig K562 H3K9ac bigWig 1.000000 2288.000000 K562 H3K9ac Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 6 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K9ac Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal on\ shortLabel K562 H3K9ac\ subGroups view=Signal factor=H3K09acB cellType=aK562 control=UCD treatment=NONE\ track wgEncodeSydhHistoneK562H3k9acbUcdSig\ type bigWig 1.000000 2288.000000\ wgEncodeUchicagoTfbsK562Ehdac8ControlSig K562 HDAC8/GFP Sg bigWig -3635.416016 7391.409180 K562 HDAC8 GFP-tag TFBS Signal from ENCODE/UChicago 2 6 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 HDAC8 GFP-tag TFBS Signal from ENCODE/UChicago\ parent wgEncodeUchicagoTfbsViewSignal\ shortLabel K562 HDAC8/GFP Sg\ subGroups view=Signal factor=HDAC8 cellType=K562 control=ControlHDAC8 rep=repPOOLED\ track wgEncodeUchicagoTfbsK562Ehdac8ControlSig\ type bigWig -3635.416016 7391.409180\ wgEncodeUncBsuProtK562MitoSig K562 mitochondria peptideMapping K562 Mitochondria Proteogenomic Hg19 Mapping Hits from ENCODE/UNC/BSU 2 6 46 0 184 150 127 219 1 0 0 expression 1 color 46,0,184\ longLabel K562 Mitochondria Proteogenomic Hg19 Mapping Hits from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtViewSignal\ shortLabel K562 mitochondria\ subGroups view=Signal cellType=t1K562 localization=mito protocol=INGEL\ track wgEncodeUncBsuProtK562MitoSig\ type peptideMapping\ visibility full\ wgEncodeSydhRnaSeqK562Ifng30PolyaRaw K562 pA+ Ng30 bigWig 0.000000 172495.000000 K562 polyA+ IFNg30 RNA-seq Raw Signal from ENCODE/SYDH 2 6 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 polyA+ IFNg30 RNA-seq Raw Signal from ENCODE/SYDH\ parent wgEncodeSydhRnaSeqViewSignal on\ shortLabel K562 pA+ Ng30\ subGroups view=RawSignal cellType=t1K562 rnaExtract=polyA treatment=IFNg30\ track wgEncodeSydhRnaSeqK562Ifng30PolyaRaw\ type bigWig 0.000000 172495.000000\ wgEncodeSunyAlbanyTilingK562Pabpc1RbpAssocRna K562 PABPC1 broadPeak K562 PABPC1 RBP Associated RNA by Tiling Array from ENCODE/SUNY 3 6 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 PABPC1 RBP Associated RNA by Tiling Array from ENCODE/SUNY\ parent wgEncodeSunyAlbanyTilingView\ shortLabel K562 PABPC1\ subGroups view=RbpAssocRna cellType=t1K562 antibody=PABPC1\ track wgEncodeSunyAlbanyTilingK562Pabpc1RbpAssocRna\ type broadPeak\ wgEncodeGisChiaPetK562Pol2SigRep2 K562 Pol2 Sig 2 bigWig 1.000000 1781.000000 K562 Pol2 ChIA-PET Signal Rep 2 from ENCODE/GIS-Ruan 2 6 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Pol2 ChIA-PET Signal Rep 2 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetSignal off\ shortLabel K562 Pol2 Sig 2\ subGroups view=Signal factor=POL2 cellType=t1K562 rep=rep2\ track wgEncodeGisChiaPetK562Pol2SigRep2\ type bigWig 1.000000 1781.000000\ KAPA_HyperExome_hg19_capture_targets KAPA Hyper P bigBed 4 Roche - KAPA HyperExome Capture Probe Footprint 0 6 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/KAPA_HyperExome_hg19_capture_targets.bb\ color 100,143,255\ longLabel Roche - KAPA HyperExome Capture Probe Footprint\ parent exomeProbesets on\ shortLabel KAPA Hyper P\ track KAPA_HyperExome_hg19_capture_targets\ type bigBed 4\ kbm7Insitu KBM7 Hi-C hic In situ Hi-C Chromatin Structure on KBM7 0 6 0 0 0 127 127 127 0 0 0 regulation 1 bigDataUrl /gbdb/hg19/bbi/hic/GSE63525_KBM7_combined.hic\ longLabel In situ Hi-C Chromatin Structure on KBM7\ parent rao2014Hic off\ shortLabel KBM7 Hi-C\ track kbm7Insitu\ type hic\ pgNb1Indel NB1 indels pgSnp NB1 Genome Variants indels 3 6 0 0 0 127 127 127 0 0 0 varRep 1 longLabel NB1 Genome Variants indels\ origAssembly hg18\ parent pgSnpPSU\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel NB1 indels\ subGroups view=A_PSU id=AB_NB1 type=Indel\ track pgNb1Indel\ getRmNgsProblemHigh NCBI NGS High Stringency bigBed 3 + NCBI GeT-RM NGS Problem List, High Stringency 1 6 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/bbi/problematic/ngsProblemHigh.bb\ longLabel NCBI GeT-RM NGS Problem List, High Stringency\ parent problematic\ priority 6\ shortLabel NCBI NGS High Stringency\ track getRmNgsProblemHigh\ type bigBed 3 +\ visibility dense\ uMassBrainHistoneSignalS3NeuP0pt75yrsF NeuN+ 0.75yrs F bigWig UMMS Brain Histone H3K4me3 (NeuN+ D3) Gender-female Age-0.75 2 6 0 255 0 127 255 127 0 0 0 regulation 0 color 0,255,0\ longLabel UMMS Brain Histone H3K4me3 (NeuN+ D3) Gender-female Age-0.75\ parent uMassBrainHistoneViewSignal\ shortLabel NeuN+ 0.75yrs F\ subGroups view=Signal donor=d_3 cellType=norm sex=female age=a_infant\ track uMassBrainHistoneSignalS3NeuP0pt75yrsF\ type bigWig\ wgEncodeRegMarkH3k4me1Nhek NHEK bigWig 0 2669 H3K4Me1 Mark (Often Found Near Regulatory Elements) on NHEK Cells from ENCODE 0 6 212 128 255 233 191 255 0 0 0 regulation 1 color 212,128,255\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on NHEK Cells from ENCODE\ parent wgEncodeRegMarkH3k4me1\ shortLabel NHEK\ table wgEncodeBroadHistoneNhekH3k4me1StdSig\ track wgEncodeRegMarkH3k4me1Nhek\ type bigWig 0 2669\ wgEncodeRegMarkH3k4me3Nhek NHEK bigWig 0 8230 H3K4Me3 Mark (Often Found Near Promoters) on NHEK Cells from ENCODE 0 6 212 128 255 233 191 255 0 0 0 regulation 1 color 212,128,255\ longLabel H3K4Me3 Mark (Often Found Near Promoters) on NHEK Cells from ENCODE\ parent wgEncodeRegMarkH3k4me3\ shortLabel NHEK\ table wgEncodeBroadHistoneNhekH3k4me3StdSig\ track wgEncodeRegMarkH3k4me3Nhek\ type bigWig 0 8230\ wgEncodeRegMarkH3k27acNhek NHEK bigWig 0 23439 H3K27Ac Mark (Often Found Near Regulatory Elements) on NHEK Cells from ENCODE 2 6 212 128 255 233 191 255 0 0 0 regulation 1 color 212,128,255\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on NHEK Cells from ENCODE\ parent wgEncodeRegMarkH3k27ac\ shortLabel NHEK\ table wgEncodeBroadHistoneNhekH3k27acStdSig\ track wgEncodeRegMarkH3k27acNhek\ type bigWig 0 23439\ noAFmutC No MaxAF Mutation: C bigWig -1.29334 0.75731 BayesDel v1 Score (without MaxAF): Mutation is C 0 6 237 180 87 246 217 171 0 0 0

Description

\ \

\ The "Prediction Scores" container track includes subtracks showing the results of prediction\ scores.

\ \

BayesDel

\

BayesDel is a deleteriousness meta-score for coding and non-coding variants, single nucleotide\ variants, and small insertion/deletions. The range of the score is from -1.29334 to 0.75731.\ The higher the score, the more likely the variant is pathogenic.

\ \

\ For gene discovery research, a universal cutoff value (0.0692655 with MaxAF, -0.0570105 without\ MaxAF) was obtained by maximizing sensitivity and specificity in classifying ClinVar variants;\ Version 1 (build date 2017-08-24).

\

\ For clinical variant classification, Bayesdel thresholds have been calculated for a variant to\ reach various levels of evidence; please refer to Pejaver et al. 2022 for general application\ of these scores in clinical applications.\

\ \

Display Conventions and Configuration

\ \

BayesDel

\

There are eight subtracks for the BayesDel track: four include pre-computed MaxAF-integrated BayesDel\ scores for missense variants, one for each base. The other four are of the same format, but scores\ are not MaxAF-integrated.

\ \

For SNVs, at each genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing the reference allele,\ (e.g. A to A) is always set to zero.

\ \

Note: There are cases in which a genomic position will have one value missing.\

\ \

When using this track, zoom in until you can see every base pair at the top of the display.\ Otherwise, there are several nucleotides per pixel under your mouse cursor and instead of an actual\ score, the tooltip text will show the average score of all nucleotides under the cursor. This is\ indicated by the prefix "~" in the mouseover.\

\ \

Data Access

\

BayesDel scores are available at the\ BayesDel website.\ \

Methods

\

BayesDel data was converted from the files provided on the\ BayesDel_170824 Database.\ The number 170824 is the date (2017-08-24) the scores were created. Both sets of BayesDel scores are\ available in this database, one integrated MaxAF (named BayesDel_170824_addAF) and one without\ (named BayesDel_170824_noAF). Data conversion was performed using\ \ custom Python scripts.\

\ \

Credits

\

Thanks to the BayesDel team for providing precomputed data, and to Tiana Pereira, Christopher\ Lee, Gerardo Perez, and Anna Benet-Pages of the Genome Browser team.

\ \

References

\

\ Feng BJ.\ \ PERCH: A Unified Framework for Disease Gene Prioritization.\ Hum Mutat. 2017 Mar;38(3):243-251.\ PMID: 27995669; PMC: PMC5299048\

\ \

\ Pejaver V, Byrne AB, Feng BJ, Pagel KA, Mooney SD, Karchin R, O'Donnell-Luria A, Harrison SM,\ Tavtigian SV, Greenblatt MS et al.\ \ Calibration of computational tools for missense variant pathogenicity classification and ClinGen\ recommendations for PP3/BP4 criteria.\ Am J Hum Genet. 2022 Dec 1;109(12):2163-2177.\ PMID: 36413997; PMC: PMC9748256\

\ \

\ Tian Y, Pesaran T, Chamberlin A, Fenwick RB, Li S, Gau CL, Chao EC, Lu HM, Black MH, Qian D.\ \ REVEL and BayesDel outperform other in silico meta-predictors for clinical variant\ classification.\ Sci Rep. 2019 Sep 4;9(1):12752.\ PMID: 31484976; PMC: PMC6726608\

\ phenDis 0 bigDataUrl /gbdb/hg19/bayesDel/NoAFBayesDelMutC.bw\ color 237, 180, 87\ html predictionScoresSuper\ longLabel BayesDel v1 Score (without MaxAF): Mutation is C\ maxHeightPixels 128:20:8\ parent bayesDel on\ shortLabel No MaxAF Mutation: C\ track noAFmutC\ type bigWig -1.29334 0.75731\ visibility hide\ windowingFunction mean+whiskers\ phastBias phastBias gBGC bed 3 . phastBias gBGC predictions 0 6 0 0 0 127 127 127 0 0 0

Description

\

\ The phastBias gBGC tracks show regions predicted to be influenced by GC-biased gene conversion\ (gBGC). gBGC is a process in which GC/AT (strong/weak) heterozygotes are preferentially resolved\ to the strong allele during gene conversion. This confers an advantage to G and C alleles that\ mimics positive selection, without conferring any known functional advantage. Therefore, some\ regions of the genome identified to be under positive selection may be better explained by gBGC.\ gBGC has also been hypothesized to be an important contributor to variation in GC content and the\ fixation of deleterious mutations.\

\ \

\ PhastBias is a prediction method that captures gBGC's signature in multiple-genome alignments:\ clusters of weak-to-strong substitutions amidst a deficit of strong-to-weak substitutions. Due\ to the short life of recombination hotspots, phastBias searches for gBGC tracts on a single\ foreground branch. PhastBias is designed to pick up gBGC tracts of arbitrary length and to be\ robust to variations in local mutation rate and GC content. It uses a hidden Markov model (HMM)\ that can be thought of as an extension to the phastCons model. Whereas phastCons predicts\ conserved elements using an HMM with two states (conserved and neutral), phastBias predicts gBGC\ tracts using a four-state HMM (conserved, neutral, conserved with gBGC, neutral with gBGC).\

\ \

\ One of the main parameters of the phastBias model is B, which represents the strength of\ gBGC and the degree to which weak-to-strong and strong-to-weak substitution rates are skewed on\ the foreground branch. The tracks presented here were created with B=3, which was chosen\ for being sensitive while still having a low false positive rate. Simulation experiments suggest\ that phastBias has reasonable power to pick up tracts with length > 1000bp, and very good\ power for tracts > 2000bp. Nonetheless, other lines of evidence suggest that phastBias only\ identifies approximately 25-50% of bases influenced by gBGC, so the tract predictions should not\ be considered exhaustive.\

\ \

Display Conventions

\

\ The phastBias tracks display separate predictions for both human and chimp lineages of the\ phylogenetic tree (from the human-chimp ancestor). For each lineage, two tracks are available: a\ wiggle showing raw posterior probabilities, and a BED track showing regions predicted to be\ affected by gBGC.\

\ \

\ The posterior probability track shows the probability that each base is assigned to either of the\ gBGC states under the phastBias HMM. \

\ \

\ The phastBias tracts show regions predicted to be affected by gBGC on a particular lineage. These\ are simply defined as all regions with posterior probability > 0.5.\

\ \

Methods

\

\ The phastBias tracks were predicted using the phastBias program, available as part of the\ PHAST software package. \ The phastBias tracks represent two separate result sets; one predicting gBGC on the branch\ leading from the human-chimp ancestor to human, and the other on the opposite branch leading\ to chimp. The software was run on human-referenced alignments of hg18, panTro2, ponAbe2, and\ rheMac2, which were extracted from the hg18 44-way multiple alignment. Details are available in\ Capra et al., 2013 (cited below). Briefly, the gBGC bias parameter B was\ set to 3, the mean expected tract length was set to 1/1000, and the transition rate into gBGC\ states was estimated by expectation-maximization. Most other parameter settings were set to the\ same values used for UCSC's mammalian conservation tracts. Relative branch lengths came from this\ placental mammal tree model,\ the conservation scale factor was set to 0.31, expected length of conserved elements to 45, and\ expected coverage of conserved elements to 0.3. The alignment was split into 10 Mb chunks; for\ each chunk, a scaling factor for the neutral tree, the transition/transversion rate ratio, and\ the background base frequencies were re-estimated using the PHAST program phyloFit. The final\ tracts were filtered to remove elements with length ≥ 5000bp, as these are likely due to\ artifacts unrelated to gBGC (repeats, alignment error).\

\ \

\ The method was re-run on hg19 data, extracting hg19, panTro2, rheMac2, and ponAbe2 from the\ 46-way alignments. The chimp tracks were not re-created for hg19, since interest in them is lower.\

\ \

References

\

\ Capra JA, Hubisz MJ, Kostka D, Pollard KS, Siepel A.\ A model-based analysis of GC-biased gene conversion in the human and chimpanzee\ genomes. PLoS Genet. 2013 Aug;9(8):e1003684.\ PMID: 23966869; PMC: PMC3744432\

\ \

\ Hubisz MJ, Pollard KS, Siepel A.\ \ PHAST and RPHAST: phylogenetic analysis with space/time models.\ Brief Bioinform. 2011 Jan;12(1):41-51.\ PMID: 21278375; PMC: PMC3030812\

\ \

\ Duret L, Galtier N.\ \ Biased gene conversion and the evolution of mammalian genomic landscapes.\ Annu Rev Genomics Hum Genet. 2009;10:285-311.\ PMID: 19630562\

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/gbdb/hg19/gnomAD/coverage/gnomad.exomes.coverage.depth25.bw\ color 105,0,150\ longLabel gnomAD Percentage of Exome Samples with at least 25X Coverage\ parent gnomadExomesReadDepthPct off\ priority 6\ shortLabel Sample % > 25X\ subGroups view=eRDepth\ track gnomadExomes25XPercentage\ ucsfRnaSeqBrainSmartCoverage Smart RawSignal bigWig 1 141 RNA-seq Smart-Tagged Raw Signal 2 6 0 0 200 100 0 0 0 0 0 regulation 0 altColor 100,0,0\ autoScale on\ color 0,0,200\ configurable on\ longLabel RNA-seq Smart-Tagged Raw Signal\ maxHeightPixels 128:32:16\ noInherit on\ parent ucsfBrainMethylViewCOV\ priority 7\ shortLabel Smart RawSignal\ subGroups view=COV sampleType=Brain assayType=RNA2\ track ucsfRnaSeqBrainSmartCoverage\ type bigWig 1 141\ yLineOnOff on\ phastBiasTracts Tracts bed 3 . phastBias gBGC predictions 1 6 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel phastBias gBGC predictions\ parent phastBias\ shortLabel Tracts\ track phastBiasTracts\ view TRACTS\ visibility dense\ 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(Oct. 2012 (GGSC Nleu3.0/nomLeu3)) Chained Alignments 3 7 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Gibbon (Oct. 2012 (GGSC Nleu3.0/nomLeu3)) Chained Alignments\ otherDb nomLeu3\ parent primateChainNetViewchain off\ shortLabel Gibbon Chain\ subGroups view=chain species=s014 clade=c00\ track chainNomLeu3\ type chain nomLeu3\ chainOchPri3 Pika Chain chain ochPri3 Pika (May 2012 (OchPri3.0/ochPri3)) Chained Alignments 3 7 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Pika (May 2012 (OchPri3.0/ochPri3)) Chained Alignments\ otherDb ochPri3\ parent placentalChainNetViewchain off\ shortLabel Pika Chain\ subGroups view=chain species=s018 clade=c00\ track chainOchPri3\ type chain ochPri3\ wgEncodeHaibMethylRrbsA549Dm002p7dHaibSitesRep1 A549 1 bed 9 + A549 DMSO 0.02% 7 d Methyl RRBS Rep 1 from ENCODE/HudsonAlpha 1 7 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 DMSO 0.02% 7 d Methyl RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel A549 1\ subGroups 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Description

\

\ This track provides a link into the \ Allen Brain Atlas (ABA)\ images for this probe. The ABA is an extensive\ database of high resolution in-situ hybridization images of adult\ male mouse brains covering the majority of genes.

\ \

Methods

\

\ The ABA created a platform for high-throughput in situ hybridization \ (ISH) that allows a highly systematic approach to analyzing gene expression in \ the brain. ISH is a technique that allows the cellular localization of mRNA \ transcripts for specific genes. Labeled antisense probes, specific to a \ particular gene, are hybridized to cellular (sense) transcripts and subsequent \ detection of the bound probe produces specific labeling in those cells \ expressing the particular gene. This method involves tagged nucleotides \ detected by colorimetric methods.

\ \

The platform used for the ABA utilizes this non-isotopic approach, with \ digoxigenin-labeled nucleotides incorporated into a riboprobe produced by in\ vitro transcription. This method produces a label that fills the cell body,\ in contrast to autoradiography that produces scattered silver grains surrounding\ each labeled cell. To enhance the ability to detect low level expression, the \ ABA has incorporated a tyramide signal amplification step into the protocol that\ greatly increases sensitivity. The specific methodology is described in detail \ within the ABA Data Production Processes document.

\ \

Credits

\

\ Thanks to the Allen \ Institute for Brain Science in general, and Susan \ Sunkin in particular, for coordinating with UCSC on this annotation.

\ \ expression 1 color 50,0,100\ group expression\ longLabel Allen Brain Atlas Probes\ priority 7\ shortLabel Allen Brain\ track allenBrainAli\ type psl .\ visibility hide\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_ctss_fwd AorticSmsToFgf2_00hr15minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_forward 0 7 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep2%20%28LK5%29.CNhs13359.12741-135I5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12741-135I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_tpm_fwd AorticSmsToFgf2_00hr15minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_forward 1 7 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep2%20%28LK5%29.CNhs13359.12741-135I5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12741-135I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5\ urlLabel FANTOM5 Details:\ wgEncodeFsuRepliChipBg02esWaveSignalRep2 BG02ES 2 bigWig -2.019916 2.087141 BG02ES Repli-chip Wavelet-smoothed Signal Rep 2 from ENCODE/FSU 0 7 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BG02ES Repli-chip Wavelet-smoothed Signal Rep 2 from ENCODE/FSU\ parent wgEncodeFsuRepliChip off\ shortLabel BG02ES 2\ subGroups view=WaveSignal cellType=t3BG02ES rep=rep2\ track wgEncodeFsuRepliChipBg02esWaveSignalRep2\ type bigWig -2.019916 2.087141\ gtexEqtlTissueBrainAnCinCortex brainAnCinCortex bed 9 + Expression QTL in Brain_Anterior_cingulate_cortex_BA24 from GTEx V6 0 7 238 238 0 246 246 127 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 238,238,0\ idInUrlSql select gene from gtexEqtlTissueBrainAnCinCortex where name='%s'\ longLabel Expression QTL in Brain_Anterior_cingulate_cortex_BA24 from GTEx V6\ parent gtexEqtlTissue on\ shortLabel brainAnCinCortex\ track gtexEqtlTissueBrainAnCinCortex\ dhcHumDerDenAncCcdsInFrameNonsynFixed CC InFrNS Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: CCDS In-frame Non-synonymous 3 7 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: CCDS In-frame Non-synonymous\ parent dhcHumDerDenAncCcds\ shortLabel CC InFrNS Fxd\ subGroups view=Ccds subset=CcdsInFrameNonsyn freq=Fixed\ track dhcHumDerDenAncCcdsInFrameNonsynFixed\ primateChainNetViewchain Chains bed 3 Primate Genomes, Chain and Net Alignments 3 7 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Primate Genomes, Chain and Net Alignments\ parent primateChainNet\ shortLabel Chains\ spectrum on\ track primateChainNetViewchain\ view chain\ visibility pack\ unipChain Chains bigBed 12 + UniProt Mature Protein Products (Polypeptide Chains) 1 7 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg19/uniprot/unipChain.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ longLabel UniProt Mature Protein Products (Polypeptide Chains)\ parent uniprot\ priority 7\ shortLabel Chains\ track unipChain\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#ptm_processing" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility dense\ iscaCuratedPathogenic Curated Path gvf ClinGen CNVs: Curated Pathogenic 3 7 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/?term=$$ phenDis 1 longLabel ClinGen CNVs: Curated Pathogenic\ parent iscaViewDetail off\ shortLabel Curated Path\ subGroups view=cnv class=path level=cur\ track iscaCuratedPathogenic\ wgEncodeDukeMapabilityUniqueness20bp Duke Uniq 20 bigWig 0.000000 1.000000 Uniqueness of 20bp Windows from ENCODE/OpenChrom(Duke) 2 7 0 0 0 127 127 127 0 0 0 map 0 longLabel Uniqueness of 20bp Windows from ENCODE/OpenChrom(Duke)\ parent wgEncodeMapabilityViewDuniq off\ shortLabel Duke Uniq 20\ subGroups view=DUNIQ win=w020 lab=DUKE\ track wgEncodeDukeMapabilityUniqueness20bp\ type bigWig 0.000000 1.000000\ lincRNAsCTForeskin_R Foreskin_R bed 5 + lincRNAs from foreskin_r 1 7 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from foreskin_r\ parent lincRNAsAllCellType on\ shortLabel Foreskin_R\ subGroups view=lincRNAsRefseqExp tissueType=foreskin_r\ track lincRNAsCTForeskin_R\ affyExonProbesetFree Free PS bed 12 Affymetrix Human Exon Array Free Probesets 1 7 0 100 0 127 177 127 0 0 0 expression 1 color 0,100,0\ longLabel Affymetrix Human Exon Array Free Probesets\ parent affyExonProbeset off\ shortLabel Free PS\ subGroups view=v1Probeset level=L4Free\ track affyExonProbesetFree\ geneHancerInteractions GH Interactions bigInteract Interactions between GeneHancer regulatory elements and genes 2 7 0 0 0 127 127 127 0 0 0 https://www.genecards.org/cgi-bin/carddisp.pl?gene=$&keywords=$&prefilter=enhancers#enhancers regulation 1 bigDataUrl /gbdb/hg19/geneHancer/geneHancerInteractionsAll.v2.hg19.bb\ longLabel Interactions between GeneHancer regulatory elements and genes\ parent ghInteraction off\ shortLabel GH Interactions\ subGroups set=b_ALL view=c_I\ track geneHancerInteractions\ urlLabel Interaction in GeneCards\ filterSSE GIAB filter SSE bigBed 3 NIST Genome-in-a-bottle: calls with evidence of systematic sequencing errors 1 7 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/bbi/problematic/filterSSE.bb\ longLabel NIST Genome-in-a-bottle: calls with evidence of systematic sequencing errors\ parent problematic\ priority 7\ shortLabel GIAB filter SSE\ track filterSSE\ type bigBed 3\ visibility dense\ wgEncodeGisRnaPetGm12878NucleusPapPlusRawSigRep1 GM12 nucl pA+ + 1 bigWig 1.000000 190066.000000 GM12878 nucleus polyA+ clone-free RNA PET Plus signal Rep 1 from ENCODE/GIS 2 7 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleus polyA+ clone-free RNA PET Plus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel GM12 nucl pA+ + 1\ subGroups view=v2PlusRawSignal cellType=aGM12878 cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetGm12878NucleusPapPlusRawSigRep1\ type bigWig 1.000000 190066.000000\ wgEncodeAwgTfbsSydhGm12878Bhlhe40cIggmusUniPk GM12878 BHLHE40 narrowPeak GM12878 TFBS Uniform Peaks of BHLHE40_(NB100-1800) from ENCODE/Stanford/Analysis 1 7 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of BHLHE40_(NB100-1800) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 BHLHE40\ subGroups tier=a10 cellType=a10GM12878 factor=BHLHE40 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Bhlhe40cIggmusUniPk\ wgEncodeBroadHistoneGm12878H3k04me1StdPkV2 GM12878 H3K4m1 broadPeak GM12878 H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 7 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg18\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel GM12878 H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H3k04me1StdPkV2\ type broadPeak\ wgEncodeSunyRipSeqGm12878Pabpc1AlnRep2 GM12878 PABPC1 2 bam GM12878 PABPC1 RIP-seq Alignments Rep 2 from ENCODE/SUNY 0 7 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 PABPC1 RIP-seq Alignments Rep 2 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewAlignments off\ shortLabel GM12878 PABPC1 2\ subGroups view=Alignments factor=PABPC1 cellType=t1GM12878 rep=rep2\ track wgEncodeSunyRipSeqGm12878Pabpc1AlnRep2\ type bam\ wgEncodeUwRepliSeqGm12878PkRep1 GM12878 Pk 1 bed 9 GM12878 Repli-seq Peaks Rep 1 from ENCODE/UW 0 7 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Repli-seq Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPeaks off\ shortLabel GM12878 Pk 1\ subGroups view=v2Peaks cellType=t1GM12878 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm12878PkRep1\ type bed 9\ wgEncodeOpenChromChipGm12878Pol2Pk GM12878 Pol2 Pk narrowPeak GM12878 Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 7 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks\ shortLabel GM12878 Pol2 Pk\ subGroups treatment=AANONE view=Peaks factor=POL2 cellType=t1GM12878\ track wgEncodeOpenChromChipGm12878Pol2Pk\ type narrowPeak\ wgEncodeSunyAlbanyGeneStGm12878RipinputRbpAssocRnaV2 GM12878 RIP-Input broadPeak GM12878 RIP-Input RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 7 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 RIP-Input RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt off\ shortLabel GM12878 RIP-Input\ subGroups cellType=t1GM12878 factor=ripInput\ track wgEncodeSunyAlbanyGeneStGm12878RipinputRbpAssocRnaV2\ type broadPeak\ wgEncodeCaltechRnaSeqGm12878R2x75Il400AlignsRep2V2 GM78 400 A 2 bam GM12878 400 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 7 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 400 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel GM78 400 A 2\ subGroups view=Aligns cellType=t1GM12878 insertLength=il400 readType=a1R2x75400 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12878R2x75Il400AlignsRep2V2\ type bam\ wgEncodeHaibTfbsGm12878Atf3Pcr1xPkRep2 GM78 ATF3 PCR1 2 broadPeak GM12878 ATF3 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 7 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ATF3 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 ATF3 PCR1 2\ subGroups view=Peaks factor=ATF3 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Atf3Pcr1xPkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaPlusRawSigRep1 GM78 cel pA- + 1 bigWig 1.000000 1565992.000000 GM12878 whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 7 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig on\ shortLabel GM78 cel pA- + 1\ subGroups view=PlusSignal cellType=t1GM12878 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 1565992.000000\ wgEncodeSydhTfbsGm12878CfosStdPk GM78 cFOS Std narrowPeak GM12878 c-FOS Standard ChIP-seq Peaks from ENCODE/SYDH 3 7 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 c-FOS Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 cFOS Std\ subGroups view=Peaks factor=CFOS cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878CfosStdPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqGm12878ChromatinTapMinusRep3 GM78 chrm TAP - 1 bigWig 1.000000 7691881.000000 GM12878 TAP-only chromatin small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 7 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only chromatin small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel GM78 chrm TAP - 1\ subGroups view=MinusSignal cellType=t1GM12878 localization=CHROMATIN protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqGm12878ChromatinTapMinusRep3\ type bigWig 1.000000 7691881.000000\ wgEncodeRikenCageGm12878CytosolPapPlusSignalRep2 GM78 cyto pA+ + 2 bigWig 1.000000 277633.000000 GM12878 cytosol polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 7 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 cytosol polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel GM78 cyto pA+ + 2\ subGroups view=PlusRawSignal cellType=t1GM12878 localization=cytosol rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageGm12878CytosolPapPlusSignalRep2\ type bigWig 1.000000 277633.000000\ wgEncodeUwHistoneGm12878H3k27me3StdHotspotsRep1 GM78 H3K27M3 Ht 1 broadPeak GM12878 H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 7 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot on\ shortLabel GM78 H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t1GM12878 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12878H3k27me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwTfbsGm12878InputStdRawRep1 GM78 In Sg 1 bigWig 1.000000 8963.000000 GM12878 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 7 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig on\ shortLabel GM78 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t1GM12878 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12878InputStdRawRep1\ type bigWig 1.000000 8963.000000\ wgEncodeDukeAffyExonH1hescSimpleSignalRep4V2 H1-hESC 4 bigBed 6 + H1-hESC Exon array Signal Rep 4 from ENCODE/Duke 0 7 0 107 27 127 181 141 1 0 0 expression 1 color 0,107,27\ longLabel H1-hESC Exon array Signal Rep 4 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel H1-hESC 4\ subGroups cellType=t1H1HESC treatment=zNONE rep=rep4\ track wgEncodeDukeAffyExonH1hescSimpleSignalRep4V2\ type bigBed 6 +\ wgEncodeUncBsuProtGencH1hescCellMudpitpepMapGcFt H1-hESC Ce M bigBed 12 H1-hESC MudPIT ProtG GENCODE10 Hg19 Mapping from ENCODE/UNC/BSU 2 7 0 107 27 127 181 141 1 0 0 expression 1 color 0,107,27\ longLabel H1-hESC MudPIT ProtG GENCODE10 Hg19 Mapping from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtGencViewpepMapGcFt\ shortLabel H1-hESC Ce M\ subGroups view=pepMapGcFt cellType=H1HESC localization=CELL protocol=MUDPIT\ track wgEncodeUncBsuProtGencH1hescCellMudpitpepMapGcFt\ type bigBed 12\ wgEncodeUwDnaseH1hescHotspotsRep1 H1hESC Ht 1 broadPeak H1-hESC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 7 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot\ shortLabel H1hESC Ht 1\ subGroups view=Hot cellType=t1H1HESC rep=rep1 treatment=None\ track wgEncodeUwDnaseH1hescHotspotsRep1\ type broadPeak\ hapmapSnpsLWK HapMap SNPs LWK bed 6 + HapMap SNPs from the LWK Population (Luhya in Webuye, Kenya) 0 7 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HapMap SNPs from the LWK Population (Luhya in Webuye, Kenya)\ parent hapmapSnps\ priority 7\ shortLabel HapMap SNPs LWK\ track hapmapSnpsLWK\ wgEncodeUwAffyExonArrayHelas3SimpleSignalRep2 HeLa-S3 2 broadPeak HeLa-S3 Exon array Signal Rep 2 from ENCODE/UW 0 7 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HeLa-S3 2\ subGroups cellType=t2HELAS3 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHelas3SimpleSignalRep2\ type broadPeak\ wgEncodeGisChiaPetHelas3Pol2InteractionsRep1 HeLaS3 Pol2 Int 1 bed 12 HeLa-S3 Pol2 ChIA-PET Interactions Rep 1 from ENCODE/GIS-Ruan 2 7 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 Pol2 ChIA-PET Interactions Rep 1 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetInteractions on\ shortLabel HeLaS3 Pol2 Int 1\ subGroups view=Interactions factor=POL2 cellType=t2HELAS3 rep=rep1\ track wgEncodeGisChiaPetHelas3Pol2InteractionsRep1\ type bed 12\ wgEncodeHaibGenotypeHepg2RegionsRep1 HepG2 1 bed 9 + HepG2 Copy number variants Replicate 1 from ENCODE/HAIB 0 7 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HepG2 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype on\ shortLabel HepG2 1\ subGroups cellType=t2HEPG2 obtainedBy=HudsonAlpha treatment=None rep=rep1\ track wgEncodeHaibGenotypeHepg2RegionsRep1\ type bed 9 +\ wgEncodeBroadHmmHsmmHMM HSMM ChromHMM bed 9 . HSMM Chromatin State Segmentation by HMM from ENCODE/Broad 0 7 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMM Chromatin State Segmentation by HMM from ENCODE/Broad\ origAssembly hg18\ parent wgEncodeBroadHmm\ shortLabel HSMM ChromHMM\ subGroups cellType=t3HSMM\ track wgEncodeBroadHmmHsmmHMM\ type bed 9 .\ wgEncodeHaibMethyl450HuvecSitesRep1 HUVEC bed 9 HUVEC Methylation 450K Bead Array from ENCODE/HAIB 1 7 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HUVEC Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 on\ shortLabel HUVEC\ subGroups cellType=t2HUVEC obtainedBy=HAIB treatment=zNONE\ track wgEncodeHaibMethyl450HuvecSitesRep1\ type bed 9\ wgEncodeOpenChromSynthHuvecPk HUVEC Syn Pk bed 9 + HUVEC DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom 0 7 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HUVEC DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom\ parent wgEncodeOpenChromSynth off\ shortLabel HUVEC Syn Pk\ subGroups cellType=t2HUVEC treatment=aNone\ track wgEncodeOpenChromSynthHuvecPk\ type bed 9 +\ wgEncodeRegTxnCaltechRnaSeqK562R2x75Il200SigPooled K562 bigWig 0 65535 Transcription of K562 cells from ENCODE 0 7 149 128 255 202 191 255 0 0 0 regulation 1 color 149,128,255\ longLabel Transcription of K562 cells from ENCODE\ parent wgEncodeRegTxn\ priority 7\ shortLabel K562\ track wgEncodeRegTxnCaltechRnaSeqK562R2x75Il200SigPooled\ type bigWig 0 65535\ wgEncodeAffyRnaChipFiltTransfragsK562CellTotal K562 cell tot broadPeak K562 whole cell total Microarray Transfrags from ENCODE Affy/CSHL 3 7 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 whole cell total Microarray Transfrags from ENCODE Affy/CSHL\ parent wgEncodeAffyRnaChipViewFiltTransfrags\ shortLabel K562 cell tot\ subGroups view=FiltTransfrags cellType=t1K562 localization=aCELL rnaExtract=total\ track wgEncodeAffyRnaChipFiltTransfragsK562CellTotal\ type broadPeak\ wgEncodeAwgSegmentationChromhmmK562 K562 ChromHMM bed 9 . K562 Genome Segmentation by ChromHMM from ENCODE/Analysis 0 7 0 0 0 127 127 127 0 0 0 regulation 1 longLabel K562 Genome Segmentation by ChromHMM from ENCODE/Analysis\ parent wgEncodeAwgSegmentation off\ shortLabel K562 ChromHMM\ subGroups tier=t1 cellType=t1K562 method=ChromHMM\ track wgEncodeAwgSegmentationChromhmmK562\ type bed 9 .\ wgEncodeGisRnaSeqK562CytosolPapAlnRep1 K562 cyto pA+ 1 bam K562 cytosol polyA+ RNA-seq Alignments rep 1 from ENCODE/GIS 1 7 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA+ RNA-seq Alignments rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaSeqViewAlignments on\ shortLabel K562 cyto pA+ 1\ subGroups view=Alignments cellType=t1K562 rnaExtract=longPolyA rep=rep1 localization=cytosol\ track wgEncodeGisRnaSeqK562CytosolPapAlnRep1\ type bam\ wgEncodeOpenChromFaireK562Pk K562 FAIRE Pk narrowPeak K562 FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 7 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks\ shortLabel K562 FAIRE Pk\ subGroups view=Peaks cellType=t1K562 treatment=AANONE\ track wgEncodeOpenChromFaireK562Pk\ type narrowPeak\ wgEncodeOpenChromDnaseK562G1phasePk K562 G1 Pk narrowPeak K562 G1 phase DNaseI HS Peaks from ENCODE/Duke 3 7 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 G1 phase DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel K562 G1 Pk\ subGroups view=Peaks cellType=t1K562 treatment=G1PHASE\ track wgEncodeOpenChromDnaseK562G1phasePk\ type narrowPeak\ wgEncodeSydhHistoneK562H3k27me3bUcdPk K562 H3K27me3 narrowPeak K562 H3K27me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 7 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K27me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks on\ shortLabel K562 H3K27me3\ subGroups view=Peaks factor=H3K27me3B cellType=aK562 control=UCD treatment=NONE\ track wgEncodeSydhHistoneK562H3k27me3bUcdPk\ type narrowPeak\ wgEncodeUchicagoTfbsK562EjunbControlPk K562 JunB/GFP Pk narrowPeak K562 JunB GFP-tag TFBS Peaks from ENCODE/UChicago 3 7 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 JunB GFP-tag TFBS Peaks from ENCODE/UChicago\ parent wgEncodeUchicagoTfbsPeaks\ shortLabel K562 JunB/GFP Pk\ subGroups view=Peaks factor=JunB cellType=K562 control=ControlJunB rep=repPOOLED\ track wgEncodeUchicagoTfbsK562EjunbControlPk\ type narrowPeak\ wgEncodeUncBsuProtK562NucleusSig K562 nucleus peptideMapping K562 Nucleus Proteogenomic Hg19 Mapping Hits from ENCODE/UNC/BSU 2 7 46 0 184 150 127 219 1 0 0 expression 1 color 46,0,184\ longLabel K562 Nucleus Proteogenomic Hg19 Mapping Hits from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtViewSignal\ shortLabel K562 nucleus\ subGroups view=Signal cellType=t1K562 localization=nucleus protocol=INGEL\ track wgEncodeUncBsuProtK562NucleusSig\ type peptideMapping\ visibility full\ wgEncodeSydhRnaSeqK562Ifng6hPolyaAln K562 pA+ Ng6h bam K562 polyA+ IFNg6h RNA-seq Alignments from ENCODE/SYDH 0 7 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 polyA+ IFNg6h RNA-seq Alignments from ENCODE/SYDH\ parent wgEncodeSydhRnaSeqViewAlignments off\ shortLabel K562 pA+ Ng6h\ subGroups view=Alignments cellType=t1K562 rnaExtract=polyA treatment=IFNg6h\ track wgEncodeSydhRnaSeqK562Ifng6hPolyaAln\ type bam\ wgEncodeSunyAlbanyTilingK562T7tagRbpAssocRna K562 T7Tag broadPeak K562 T7Tag RBP Associated RNA by Tiling Array from ENCODE/SUNY 3 7 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 T7Tag RBP Associated RNA by Tiling Array from ENCODE/SUNY\ parent wgEncodeSunyAlbanyTilingView\ shortLabel K562 T7Tag\ subGroups view=RbpAssocRna cellType=t1K562 antibody=T7Tag\ track wgEncodeSunyAlbanyTilingK562T7tagRbpAssocRna\ type broadPeak\ KAPA_HyperExome_hg19_primary_targets KAPA Hyper T bigBed 4 Roche - KAPA HyperExome Primary Target Regions 0 7 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/sorted-KAPA_HyperExome_hg19_primary_targets.bb\ color 100,143,255\ longLabel Roche - KAPA HyperExome Primary Target Regions\ parent exomeProbesets on\ shortLabel KAPA Hyper T\ track KAPA_HyperExome_hg19_primary_targets\ type bigBed 4\ decodeMale Male bigWig 0.0 144.958 deCODE recombination map, male 0 7 0 81 200 127 168 227 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 0 color 0,81,200\ configurable on\ longLabel deCODE recombination map, male\ parent maleView\ priority 7\ shortLabel Male\ subGroups view=male\ track decodeMale\ type bigWig 0.0 144.958\ pgMd8 MD8 pgSnp MD8 Genome Variants (all SNPs, 16x exome) 3 7 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MD8 Genome Variants (all SNPs, 16x exome)\ origAssembly hg18\ parent pgSnpPSU\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel MD8\ subGroups view=A_PSU id=AC_MD8 type=SNP\ track pgMd8\ primateChainNetViewnet Nets bed 3 Primate Genomes, Chain and Net Alignments 1 7 0 0 0 255 255 0 0 0 0 compGeno 1 longLabel Primate Genomes, Chain and Net Alignments\ parent primateChainNet\ shortLabel Nets\ track primateChainNetViewnet\ view net\ visibility dense\ uMassBrainHistoneSignalS4NeuP1pt3yrsM NeuN+ 1.3yrs M bigWig UMMS Brain Histone H3K4me3 (NeuN+ D4) Gender-male Age-1.3 2 7 41 158 41 148 206 148 0 0 0 regulation 0 color 41,158,41\ longLabel UMMS Brain Histone H3K4me3 (NeuN+ D4) Gender-male Age-1.3\ parent uMassBrainHistoneViewSignal\ shortLabel NeuN+ 1.3yrs M\ subGroups view=Signal donor=e_4 cellType=norm sex=male age=b_young\ track uMassBrainHistoneSignalS4NeuP1pt3yrsM\ type bigWig\ nhekInsitu NHEK Hi-C hic In situ Hi-C Chromatin Structure on NHEK 0 7 0 0 0 127 127 127 0 0 0 regulation 1 bigDataUrl /gbdb/hg19/bbi/hic/GSE63525_NHEK_combined.hic\ longLabel In situ Hi-C Chromatin Structure on NHEK\ parent rao2014Hic off\ shortLabel NHEK Hi-C\ track nhekInsitu\ type hic\ wgEncodeRegMarkH3k4me1Nhlf NHLF bigWig 0 6866 H3K4Me1 Mark (Often Found Near Regulatory Elements) on NHLF Cells from ENCODE 0 7 255 128 212 255 191 233 0 0 0 regulation 1 color 255,128,212\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on NHLF Cells from ENCODE\ parent wgEncodeRegMarkH3k4me1\ shortLabel NHLF\ table wgEncodeBroadHistoneNhlfH3k4me1StdSig\ track wgEncodeRegMarkH3k4me1Nhlf\ type bigWig 0 6866\ wgEncodeRegMarkH3k4me3Nhlf NHLF bigWig 0 19229 H3K4Me3 Mark (Often Found Near Promoters) on NHLF Cells from ENCODE 0 7 255 128 212 255 191 233 0 0 0 regulation 1 color 255,128,212\ longLabel H3K4Me3 Mark (Often Found Near Promoters) on NHLF Cells from ENCODE\ parent wgEncodeRegMarkH3k4me3\ shortLabel NHLF\ table wgEncodeBroadHistoneNhlfH3k4me3StdSig\ track wgEncodeRegMarkH3k4me3Nhlf\ type bigWig 0 19229\ wgEncodeRegMarkH3k27acNhlf NHLF bigWig 0 3851 H3K27Ac Mark (Often Found Near Regulatory Elements) on NHLF Cells from ENCODE 2 7 255 128 212 255 191 233 0 0 0 regulation 1 color 255,128,212\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on NHLF Cells from ENCODE\ parent wgEncodeRegMarkH3k27ac\ shortLabel NHLF\ table wgEncodeBroadHistoneNhlfH3k27acStdSig\ track wgEncodeRegMarkH3k27acNhlf\ type bigWig 0 3851\ noAFmutG No MaxAF Mutation: G bigWig -1.29334 0.75731 BayesDel v1 Score (without MaxAF): Mutation is G 0 7 234 167 57 244 211 156 0 0 0

Description

\ \

\ The "Prediction Scores" container track includes subtracks showing the results of prediction\ scores.

\ \

BayesDel

\

BayesDel is a deleteriousness meta-score for coding and non-coding variants, single nucleotide\ variants, and small insertion/deletions. The range of the score is from -1.29334 to 0.75731.\ The higher the score, the more likely the variant is pathogenic.

\ \

\ For gene discovery research, a universal cutoff value (0.0692655 with MaxAF, -0.0570105 without\ MaxAF) was obtained by maximizing sensitivity and specificity in classifying ClinVar variants;\ Version 1 (build date 2017-08-24).

\

\ For clinical variant classification, Bayesdel thresholds have been calculated for a variant to\ reach various levels of evidence; please refer to Pejaver et al. 2022 for general application\ of these scores in clinical applications.\

\ \

Display Conventions and Configuration

\ \

BayesDel

\

There are eight subtracks for the BayesDel track: four include pre-computed MaxAF-integrated BayesDel\ scores for missense variants, one for each base. The other four are of the same format, but scores\ are not MaxAF-integrated.

\ \

For SNVs, at each genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing the reference allele,\ (e.g. A to A) is always set to zero.

\ \

Note: There are cases in which a genomic position will have one value missing.\

\ \

When using this track, zoom in until you can see every base pair at the top of the display.\ Otherwise, there are several nucleotides per pixel under your mouse cursor and instead of an actual\ score, the tooltip text will show the average score of all nucleotides under the cursor. This is\ indicated by the prefix "~" in the mouseover.\

\ \

Data Access

\

BayesDel scores are available at the\ BayesDel website.\ \

Methods

\

BayesDel data was converted from the files provided on the\ BayesDel_170824 Database.\ The number 170824 is the date (2017-08-24) the scores were created. Both sets of BayesDel scores are\ available in this database, one integrated MaxAF (named BayesDel_170824_addAF) and one without\ (named BayesDel_170824_noAF). Data conversion was performed using\ \ custom Python scripts.\

\ \

Credits

\

Thanks to the BayesDel team for providing precomputed data, and to Tiana Pereira, Christopher\ Lee, Gerardo Perez, and Anna Benet-Pages of the Genome Browser team.

\ \

References

\

\ Feng BJ.\ \ PERCH: A Unified Framework for Disease Gene Prioritization.\ Hum Mutat. 2017 Mar;38(3):243-251.\ PMID: 27995669; PMC: PMC5299048\

\ \

\ Pejaver V, Byrne AB, Feng BJ, Pagel KA, Mooney SD, Karchin R, O'Donnell-Luria A, Harrison SM,\ Tavtigian SV, Greenblatt MS et al.\ \ Calibration of computational tools for missense variant pathogenicity classification and ClinGen\ recommendations for PP3/BP4 criteria.\ Am J Hum Genet. 2022 Dec 1;109(12):2163-2177.\ PMID: 36413997; PMC: PMC9748256\

\ \

\ Tian Y, Pesaran T, Chamberlin A, Fenwick RB, Li S, Gau CL, Chao EC, Lu HM, Black MH, Qian D.\ \ REVEL and BayesDel outperform other in silico meta-predictors for clinical variant\ classification.\ Sci Rep. 2019 Sep 4;9(1):12752.\ PMID: 31484976; PMC: PMC6726608\

\ phenDis 0 bigDataUrl /gbdb/hg19/bayesDel/NoAFBayesDelMutG.bw\ color 234, 167, 57\ html predictionScoresSuper\ longLabel BayesDel v1 Score (without MaxAF): Mutation is G\ maxHeightPixels 128:20:8\ parent bayesDel on\ shortLabel No MaxAF Mutation: G\ track noAFmutG\ type bigWig -1.29334 0.75731\ visibility hide\ windowingFunction mean+whiskers\ xenoEst Other ESTs psl xeno Non-Human ESTs from GenBank 0 7 0 0 0 127 127 127 1 0 0 https://www.ncbi.nlm.nih.gov/htbin-post/Entrez/query?form=4&db=n&term=$$

Description

\

\ This track displays translated blat alignments of expressed sequence tags \ (ESTs) in GenBank from organisms other than human.\ ESTs are single-read sequences, typically about 500 bases in length, that \ usually represent fragments of transcribed genes.

\ \

Display Conventions and Configuration

\

\ This track follows the display conventions for \ PSL alignment tracks. In dense display mode, the items that\ are more darkly shaded indicate matches of better quality.

\

\ The strand information (+/-) for this track is in two parts. The\ first + or - indicates the orientation of the query sequence whose\ translated protein produced the match. The second + or - indicates the\ orientation of the matching translated genomic sequence. Because the two\ orientations of a DNA sequence give different predicted protein sequences,\ there are four combinations. ++ is not the same as --, nor is +- the same\ as -+.

\

\ The description page for this track has a filter that can be used to change \ the display mode, alter the color, and include/exclude a subset of items \ within the track. This may be helpful when many items are shown in the track \ display, especially when only some are relevant to the current task.

\

\ To use the filter:\

    \
  1. Type a term in one or more of the text boxes to filter the EST\ display. For example, to apply the filter to all ESTs expressed in a specific\ organ, type the name of the organ in the tissue box. To view the list of \ valid terms for each text box, consult the table in the Table Browser that \ corresponds to the factor on which you wish to filter. For example, the \ "tissue" table contains all the types of tissues that can be \ entered into the tissue text box. Multiple terms may be entered at once, \ separated by a space. Wildcards may also be used in the\ filter.\
  2. If filtering on more than one value, choose the desired combination\ logic. If "and" is selected, only ESTs that match all filter \ criteria will be highlighted. If "or" is selected, ESTs that \ match any one of the filter criteria will be highlighted.\
  3. Choose the color or display characteristic that should be used to \ highlight or include/exclude the filtered items. If "exclude" is \ chosen, the browser will not display ESTs that match the filter criteria. \ If "include" is selected, the browser will display only those \ ESTs that match the filter criteria.\

\ \

\ This track may also be configured to display base labeling, a feature that\ allows the user to display all bases in the aligning sequence or only those\ that differ from the genomic sequence. For more information about this option,\ go to the\ \ Base Coloring for Alignment Tracks page.\ Several types of alignment gap may also be colored;\ for more information, go to the\ \ Alignment Insertion/Deletion Display Options page.\

\ \

Methods

\

\ To generate this track, the ESTs were aligned against the genome using \ blat. When a single EST aligned in multiple places, the \ alignment having the highest base identity was found. Only alignments \ having a base identity level within 0.5% of the best and at least 96% base \ identity with the genomic sequence were kept.

\ \

Credits

\

\ This track was produced at UCSC from EST sequence data submitted to the \ international public sequence databases by scientists worldwide.

\ \

References

\

\ Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW.\ \ GenBank.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42.\ PMID: 23193287; PMC: PMC3531190\

\ \

\ Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\ GenBank: update.\ Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6.\ PMID: 14681350; PMC: PMC308779\

\ \

\ Kent WJ.\ BLAT - the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

\ rna 1 baseColorUseSequence genbank\ group rna\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Non-Human ESTs from GenBank\ priority 7\ shortLabel Other ESTs\ spectrum on\ track xenoEst\ type psl xeno\ url https://www.ncbi.nlm.nih.gov/htbin-post/Entrez/query?form=4&db=n&term=$$\ visibility hide\ polyASeqSitesMaqcBrain1Fwd PolyA-Seq MaqcBrain1 bigWig 0.250000 62850.468750 Poly(A)-tail sequencing of MAQC Brain (replicate 1) from Merck (Fwd strand) 2 7 153 51 51 204 153 153 0 0 0 rna 0 color 153,51,51\ longLabel Poly(A)-tail sequencing of MAQC Brain (replicate 1) from Merck (Fwd strand)\ parent polyASeqSitesSignalView\ shortLabel PolyA-Seq MaqcBrain1\ subGroups view=Signal tissType=MaqcBrain1 strand=fwd\ track polyASeqSitesMaqcBrain1Fwd\ type bigWig 0.250000 62850.468750\ primateChainNet Primate Chain/Net bed 3 Primate Genomes, Chain and Net Alignments 0 7 0 0 0 255 255 0 0 0 0

Description

\

Chain Track

\

\ The chain track shows alignments of human (Feb. 2009 (GRCh37/hg19)) to\ other genomes using a gap scoring system that allows longer gaps \ than traditional affine gap scoring systems. It can also tolerate gaps in both\ human and the other genome simultaneously. These \ "double-sided" gaps can be caused by local inversions and \ overlapping deletions in both species. \

\ The chain track displays boxes joined together by either single or\ double lines. The boxes represent aligning regions.\ Single lines indicate gaps that are largely due to a deletion in the\ other assembly or an insertion in the human assembly.\ Double lines represent more complex gaps that involve substantial\ sequence in both species. This may result from inversions, overlapping\ deletions, an abundance of local mutation, or an unsequenced gap in one\ species. In cases where multiple chains align over a particular region of\ the other genome, the chains with single-lined gaps are often \ due to processed pseudogenes, while chains with double-lined gaps are more \ often due to paralogs and unprocessed pseudogenes.

\

\ In the "pack" and "full" display\ modes, the individual feature names indicate the chromosome, strand, and\ location (in thousands) of the match for each matching alignment.

\ \

Net Track

\

\ The net track shows the best human/other chain for \ every part of the other genome. It is useful for\ finding orthologous regions and for studying genome\ rearrangement. The human sequence used in this annotation is from\ the Feb. 2009 (GRCh37/hg19) assembly.

\ \

Display Conventions and Configuration

\

Chain Track

\

By default, the chains to chromosome-based assemblies are colored\ based on which chromosome they map to in the aligning organism. To turn\ off the coloring, check the "off" button next to: Color\ track based on chromosome.

\

\ To display only the chains of one chromosome in the aligning\ organism, enter the name of that chromosome (e.g. chr4) in box next to: \ Filter by chromosome.

\ \

Net Track

\

\ In full display mode, the top-level (level 1)\ chains are the largest, highest-scoring chains that\ span this region. In many cases gaps exist in the\ top-level chain. When possible, these are filled in by\ other chains that are displayed at level 2. The gaps in \ level 2 chains may be filled by level 3 chains and so\ forth.

\

\ In the graphical display, the boxes represent ungapped \ alignments; the lines represent gaps. Click\ on a box to view detailed information about the chain\ as a whole; click on a line to display information\ about the gap. The detailed information is useful in determining\ the cause of the gap or, for lower level chains, the genomic\ rearrangement.

\

\ Individual items in the display are categorized as one of four types\ (other than gap):

\

    \
  • Top - the best, longest match. Displayed on level 1.\
  • Syn - line-ups on the same chromosome as the gap in the level above\ it.\
  • Inv - a line-up on the same chromosome as the gap above it, but in \ the opposite orientation.\
  • NonSyn - a match to a chromosome different from the gap in the \ level above.\

\ \

Methods

\

Chain track

\

\ Transposons that have been inserted since the human/other\ split were removed from the assemblies. The abbreviated genomes were\ aligned with lastz, and the transposons were added back in.\ The resulting alignments were converted into axt format using the lavToAxt\ program. The axt alignments were fed into axtChain, which organizes all\ alignments between a single human chromosome and a single\ chromosome from the other genome into a group and creates a kd-tree out\ of the gapless subsections (blocks) of the alignments. A dynamic program\ was then run over the kd-trees to find the maximally scoring chains of these\ blocks.\ \

\
\

\

\ The following lastz matrix was used
for the alignments to: Chimp,
\ Gorilla, Orangutan, Gibbon,
Rhesus, Baboon and Marmoset\

\ \ \ \ \ \ \ \ \
 ACGT
A90-330-236-356
C-330100-318-236
G-236-318100-330
T-356-236-33090
\ \ 		 \

\

\ The following lastz matrix was used
for the alignments to: Tarsier,
\ Mouse Lemur and Bushbaby\

\ \ \ \ \ \ \ \
 ACGT
A91-114-31-123
C-114100-125-31
G-31-125100-114
T-123-31-11491
\

\ \ For the alignments to: Chimp, Gorilla, Orangutan, Gibbon, Rhesus,\ Baboon and Marmoset, chains scoring below a minimum\ score of '5000' were discarded; the remaining chains\ are displayed in this track. The linear gap matrix used with axtChain:
\ 
-linearGap=loose\
\
tablesize    11\
smallSize   111\
position  1   2   3   11  111  2111  12111  32111  72111  152111  252111\
qGap    325 360 400  450  600  1100   3600   7600  15600   31600   56600\
tGap    325 360 400  450  600  1100   3600   7600  15600   31600   56600\
bothGap 625 660 700  750  900  1400   4000   8000  16000   32000   57000\
\ \ For the alignments to: Tarsier, Mouse Lemur and Bushbaby, chains scoring\ below a minimum score of '3000' were discarded; the remaining chains\ are displayed in this track. The same linear gap matrix show above\ was used with axtChain.\

\

Chains for low-coverage assemblies for which no browser has been built \ (Gorilla, Baboon, Tarsier, Mouse Lemur and Bushbaby) are not available as\ browser tracks, but only from \ downloads.\

\ \ See also: lastz parameters and other details (e.g., update time) \ and chain minimum score and gap parameters used in these alignments.\ \

Net track

\

\ Chains were derived from lastz alignments, using the methods\ described on the chain tracks description pages, and sorted with the \ highest-scoring chains in the genome ranked first. The program\ chainNet was then used to place the chains one at a time, trimming them as \ necessary to fit into sections not already covered by a higher-scoring chain. \ During this process, a natural hierarchy emerged in which a chain that filled \ a gap in a higher-scoring chain was placed underneath that chain. The program \ netSyntenic was used to fill in information about the relationship between \ higher- and lower-level chains, such as whether a lower-level\ chain was syntenic or inverted relative to the higher-level chain. \ The program netClass was then used to fill in how much of the gaps and chains \ contained Ns (sequencing gaps) in one or both species and how much\ was filled with transposons inserted before and after the two organisms \ diverged.

\ \

Credits

\

\ Lastz (previously known as blastz) was developed at\ Pennsylvania State University by \ Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from\ Ross Hardison.

\

\ Lineage-specific repeats were identified by Arian Smit and his \ RepeatMasker\ program.

\

\ The axtChain program was developed at the University of California at \ Santa Cruz by Jim Kent with advice from Webb Miller and David Haussler.

\

\ The browser display and database storage of the chains and nets were created\ by Robert Baertsch and Jim Kent.

\

\ The chainNet, netSyntenic, and netClass programs were\ developed at the University of California\ Santa Cruz by Jim Kent.

\

\ \

References

\

\ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput. 2002:115-26.\ PMID: 11928468\

\ \

\ Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\ Evolution's cauldron:\ duplication, deletion, and rearrangement in the mouse and human genomes.\ Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\ PMID: 14500911; PMC: PMC208784\

\ \

\ Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC,\ Haussler D, Miller W.\ Human-mouse alignments with BLASTZ.\ Genome Res. 2003 Jan;13(1):103-7.\ PMID: 12529312; PMC: PMC430961\

\ compGeno 1 altColor 255,255,0\ chainLinearGap loose\ chainMinScore 5000\ color 0,0,0\ compositeTrack on\ configurable on\ dimensions dimensionX=clade dimensionY=species\ dragAndDrop subTracks\ group compGeno\ html primateChainNet\ longLabel Primate Genomes, Chain and Net Alignments\ noInherit on\ priority 7\ shortLabel Primate Chain/Net\ sortOrder species=+ view=+ clade=+\ subGroup1 view Views chain=Chains net=Nets\ subGroup2 species Species s000a=Human s000b=Hg38P2 s001=Human s002=J._Craig_Venter s002a=HG01243v3 s0025=Chimp s003=Chimp s004=Chimp s005=Chimp s006=Chimp s007a=Bonobo s007b=Bonobo s008=Bonobo s009a=Gorilla s009b=Gorilla s010=Gorilla s011=Gorilla s012=Gorilla s013a=Orangutan s013b=Orangutan s014=Gibbon s015=Gibbon s016=Proboscis_monkey s017=Black_snub-nosed_monkey s018=Golden_snub-nosed_monkey s019=Angolan_colobus s020=Crab-eating_macaque s021=Rhesus s022=Rhesus s023a=Rhesus s023b=Rhesus s024=Baboon s025=Baboon s026=Baboon s027=Pig-tailed_macaque s028=Sooty_mangabey s029=Green_monkey s030=Green_monkey s031=Drill s032=Squirrel_monkey s033=Ma's_night_monkey s034a=Marmoset s034b=Marmoset s035=Marmoset s036=White-faced_sapajou s037=Tarsier s038=Tarsier s039=Sclater's_lemur s040=Black_lemur s041=Coquerel's_sifaka s042=Mouse_lemur s043=Mouse_lemur s044=Mouse_lemur s045=Bushbaby s046=Bushbaby\ subGroup3 clade Clade c00=hominidae c01=cercopithecinae c02=haplorrhini c03=strepsirrhini\ track primateChainNet\ type bed 3\ visibility hide\ prsProstateCancer PRS-E Prost. Cancer bigBed 8 + Polygenic Risk Scores eMERGE: Prostate Cancer 1 7 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg19/prsEmerge/prostate_cancer.bb\ longLabel Polygenic Risk Scores eMERGE: Prostate Cancer\ parent prsEmerge pack\ shortLabel PRS-E Prost. Cancer\ track prsProstateCancer\ type bigBed 8 +\ burgeRnaSeqGemMapperAlignBrain RNA-seq Brain bed 12 Burge Lab RNA-seq 32mer Reads from Brain 1 7 12 12 120 133 133 187 0 0 0 expression 1 longLabel Burge Lab RNA-seq 32mer Reads from Brain\ parent burgeRnaSeqGemMapperAlignViewAlignments on\ shortLabel RNA-seq Brain\ subGroups view=Alignments tissueType=brain\ track burgeRnaSeqGemMapperAlignBrain\ gnomadGenomes30XPercentage Sample % > 30X bigWig 0 1 gnomAD Percentage of Genome Samples with at least 30X Coverage 0 7 75 0 180 165 127 217 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.genomes.coverage.depth30.bw\ color 75,0,180\ longLabel gnomAD Percentage of Genome Samples with at least 30X Coverage\ parent gnomadGenomesReadDepthPct on\ priority 7\ shortLabel Sample % > 30X\ subGroups view=gRDepth\ track gnomadGenomes30XPercentage\ gnomadExomes30XPercentage Sample % > 30X bigWig 0 1 gnomAD Percentage of Exome Samples with at least 30X Coverage 0 7 75 0 180 165 127 217 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.exomes.coverage.depth30.bw\ color 75,0,180\ longLabel gnomAD Percentage of Exome Samples with at least 30X Coverage\ parent gnomadExomesReadDepthPct on\ priority 7\ shortLabel Sample % > 30X\ subGroups view=eRDepth\ track gnomadExomes30XPercentage\ refGene UCSC RefSeq genePred refPep refMrna UCSC annotations of RefSeq RNAs (NM_* and NR_*) 1 7 12 12 120 133 133 187 0 0 0

Description

\ \

\ The RefSeq Genes track shows known human protein-coding and\ non-protein-coding genes taken from the NCBI RNA reference sequences\ collection (RefSeq). The data underlying this track are updated weekly.

\ \

\ Please visit the Feedback for Gene and Reference Sequences (RefSeq) page to\ make suggestions, submit additions and corrections, or ask for help concerning\ RefSeq records.\

\ \

\ For more information on the different gene tracks, see our Genes FAQ.

\ \

Display Conventions and Configuration

\ \

\ This track follows the display conventions for\ \ gene prediction tracks.\ The color shading indicates the level of review the RefSeq record has\ undergone: predicted (light), provisional (medium), reviewed (dark).\

\ \

\ The item labels and display colors of features within this track can be\ configured through the controls at the top of the track description page.\

    \
  • Label: By default, items are labeled by gene name. Click the\ appropriate Label option to display the accession name instead of the gene\ name, show both the gene and accession names, or turn off the label\ completely.
    • \
  • Codon coloring: This track contains an optional codon coloring\ feature that allows users to quickly validate and compare gene predictions.\ To display codon colors, select the genomic codons option from the\ Color track by codons pull-down menu. For more information about this\ feature, go to the\ \ Coloring Gene Predictions and Annotations by Codon page.
    • \
  • Hide non-coding genes: By default, both the protein-coding and\ non-protein-coding genes are displayed. If you wish to see only the coding\ genes, click this box.
    • \
\

\ \

Methods

\ \

\ RefSeq RNAs were aligned against the human genome using BLAT. Those\ with an alignment of less than 15% were discarded. When a single RNA\ aligned in multiple places, the alignment having the highest base identity\ was identified. Only alignments having a base identity level within 0.1% of\ the best and at least 96% base identity with the genomic sequence were kept.\

\ \

Credits

\ \

\ This track was produced at UCSC from RNA sequence data generated by scientists\ worldwide and curated by the NCBI\ RefSeq project.\

\ \

References

\ \

\ Kent WJ.\ \ BLAT - the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

\ \

\ Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J,\ Landrum MJ, McGarvey KM et al.\ \ RefSeq: an update on mammalian reference sequences.\ Nucleic Acids Res. 2014 Jan;42(Database issue):D756-63.\ PMID: 24259432; PMC: PMC3965018\

\ \

\ Pruitt KD, Tatusova T, Maglott DR.\ \ NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.\ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.\ PMID: 15608248; PMC: PMC539979\

\ genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 12,12,120\ dataVersion \ group genes\ idXref hgFixed.refLink mrnaAcc name\ longLabel UCSC annotations of RefSeq RNAs (NM_* and NR_*)\ parent refSeqComposite off\ priority 7\ shortLabel UCSC RefSeq\ track refGene\ type genePred refPep refMrna\ visibility dense\ dhcVcfHGDP00927 Yoruba Variants vcfTabix Yoruba Individual (HGDP00927) Variant Calls 0 7 0 0 0 127 127 127 0 0 0 denisova 1 longLabel Yoruba Individual (HGDP00927) Variant Calls\ parent dhcVcfModern\ priority 7\ shortLabel Yoruba Variants\ track dhcVcfHGDP00927\ vcfDoMaf off\ netMelGal1 Turkey Net netAlign melGal1 chainMelGal1 Turkey (Dec. 2009 (TGC Turkey_2.01/melGal1)) Alignment Net 1 8 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Turkey (Dec. 2009 (TGC Turkey_2.01/melGal1)) Alignment Net\ otherDb melGal1\ parent vertebrateChainNetViewnet off\ shortLabel Turkey Net\ subGroups view=net species=s007a clade=c01\ track netMelGal1\ type netAlign melGal1 chainMelGal1\ netNomLeu3 Gibbon Net netAlign nomLeu3 chainNomLeu3 Gibbon (Oct. 2012 (GGSC Nleu3.0/nomLeu3)) Alignment Net 1 8 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Gibbon (Oct. 2012 (GGSC Nleu3.0/nomLeu3)) Alignment Net\ otherDb nomLeu3\ parent primateChainNetViewnet off\ shortLabel Gibbon Net\ subGroups view=net species=s014 clade=c00\ track netNomLeu3\ type netAlign nomLeu3 chainNomLeu3\ netOchPri3 Pika Net netAlign ochPri3 chainOchPri3 Pika (May 2012 (OchPri3.0/ochPri3)) Alignment Net 1 8 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Pika (May 2012 (OchPri3.0/ochPri3)) Alignment Net\ otherDb ochPri3\ parent placentalChainNetViewnet off\ shortLabel Pika Net\ subGroups view=net species=s018 clade=c00\ track netOchPri3\ type netAlign ochPri3 chainOchPri3\ wgEncodeHaibMethylRrbsA549Dm002p7dHaibSitesRep2 A549 2 bed 9 + A549 DMSO 0.02% 7 d Methyl RRBS Rep 2 from ENCODE/HudsonAlpha 1 8 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 DMSO 0.02% 7 d Methyl RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel A549 2\ subGroups cellType=t2A549 obtainedBy=HAIB treatment=DM002P7D rep=rep2\ track wgEncodeHaibMethylRrbsA549Dm002p7dHaibSitesRep2\ type bed 9 +\ encTfChipPkENCFF134CPX A549 CREB1 2 narrowPeak Transcription Factor ChIP-seq Peaks of CREB1 in A549 from ENCODE 3 (ENCFF134CPX) 1 8 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CREB1 in A549 from ENCODE 3 (ENCFF134CPX)\ parent encTfChipPk off\ shortLabel A549 CREB1 2\ subGroups cellType=A549 factor=CREB1\ track encTfChipPkENCFF134CPX\ wgEncodeHaibRnaSeqA549Dex100pmAlnRep2 A549 DEX100pM 2 bam A549 DEX 1 hr 100 pM RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 8 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 DEX 1 hr 100 pM RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel A549 DEX100pM 2\ subGroups view=Alignments cellType=t2A549 treatment=DEX100PM rep=rep2\ track wgEncodeHaibRnaSeqA549Dex100pmAlnRep2\ type bam\ wgEncodeUwDgfA549Raw A549 Raw bigWig 1.000000 784854.000000 A549 DNaseI DGF Raw Signal from ENCODE/UW 0 8 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel A549 Raw\ subGroups view=zRaw cellType=t2A549 treatment=aNONE rep=rep1\ track wgEncodeUwDgfA549Raw\ type bigWig 1.000000 784854.000000\ agilentHrd1x1m Ag HRD 1x1m bed 4 . Agilent SurePrint G3 Human High-Resolution Microarray 1x1M AMADID 023642 0 8 255 128 0 255 191 127 0 0 0 varRep 1 color 255,128,0\ longLabel Agilent SurePrint G3 Human High-Resolution Microarray 1x1M AMADID 023642\ parent genotypeArrays\ priority 8\ shortLabel Ag HRD 1x1m\ track agilentHrd1x1m\ type bed 4 .\ burgeRnaSeqGemMapperAlignViewAlignments Alignments bed 12 Burge Lab RNA-seq Aligned by GEM Mapper 1 8 12 12 120 133 133 187 0 0 0 expression 1 color 12,12,120\ longLabel Burge Lab RNA-seq Aligned by GEM Mapper\ maxWindowToDraw 50000000\ parent burgeRnaSeqGemMapperAlign\ shortLabel Alignments\ track burgeRnaSeqGemMapperAlignViewAlignments\ type bed 12\ view Alignments\ visibility dense\ burgeRnaSeqGemMapperAlignViewRawSignal All Raw Signal bedGraph 4 Burge Lab RNA-seq Aligned by GEM Mapper 2 8 46 0 184 150 127 219 0 0 0 expression 0 autoScale on\ color 46,0,184\ longLabel Burge Lab RNA-seq Aligned by GEM Mapper\ maxHeightPixels 100:24:16\ parent burgeRnaSeqGemMapperAlign\ shortLabel All Raw Signal\ track burgeRnaSeqGemMapperAlignViewRawSignal\ transformFunc NONE\ type bedGraph 4\ view RawSignal\ viewLimits 0:1000\ visibility full\ windowingFunction maximum\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_ctss_rev AorticSmsToFgf2_00hr15minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_reverse 0 8 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep2%20%28LK5%29.CNhs13359.12741-135I5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12741-135I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_tpm_rev AorticSmsToFgf2_00hr15minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_reverse 1 8 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep2%20%28LK5%29.CNhs13359.12741-135I5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12741-135I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5\ urlLabel FANTOM5 Details:\ gtexEqtlTissueBrainCaudate brainCaudate bed 9 + Expression QTL in Brain_Caudate_basal_ganglia from GTEx V6 0 8 238 238 0 246 246 127 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 238,238,0\ idInUrlSql select gene from gtexEqtlTissueBrainCaudate where name='%s'\ longLabel Expression QTL in Brain_Caudate_basal_ganglia from GTEx V6\ parent gtexEqtlTissue on\ shortLabel brainCaudate\ track gtexEqtlTissueBrainCaudate\ burgeRnaSeqGemMapperAlign Burge RNA-seq bed 12 Burge Lab RNA-seq Aligned by GEM Mapper 0 8 0 0 0 127 127 127 0 0 0

Description

\

\ RNA-Seq is a method for mapping and quantifying the transcriptome of any\ organism that has a genomic DNA sequence assembly. RNA-Seq was performed \ by reverse-transcribing an RNA sample into cDNA, followed by high \ throughput DNA sequencing on an Illumina Genome Analyser.\ This track shows the RNA-seq data published by\ Chris Burge's lab\ (Wang et al.,2008) mapped to the genome using GEM Mapper \ by the \ Guigó lab at the Center for Genomic Regulation\ (CRG). The subtracks display \ RNA-seq data from various tissues/cell lines:\

    \
  1. Brain
    2. \
  2. Liver
    3. \
  3. Heart
    4. \
  4. Muscle
    5. \
  5. Colon
    6. \
  6. Adipose
    7. \
  7. Testes
    8. \
  8. Lymph Node
    9. \
  9. Breast
    10. \
  10. BT474 - Breast Tumour Cell Line
    11. \
  11. HME - Human Mammary Epithelial Cell Line
    12. \
  12. MCF7 - Breast Adenocarcinoma Cell Line
    13. \
  13. MB-435 - Breast Ductal Adenocarcinoma Cell Line*
    14. \
  14. T-47D - Breast Ductal Carcinoma Cell Line
    15. \
\

\ Tissues were obtained from unrelated anonymous donors. HME is a mammary \ epithelial cell line immortalized with telomerase reverse transcriptase (TERT). The other cell lines are breast cancer cell lines produced from invasive \ ductal carcinomas (ATCC). \

\ *NOTE: studies have shown that the MDA-MB-435 cell line appears to have been\ contaminated with the M14 melanoma cell line. See this \ entry on\ the American Type Culture Collection (ATCC) website for more details.\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains multiple data types\ (views). For each view, there are multiple subtracks that\ display individually on the browser. Instructions for configuring multi-view\ tracks are here.\ The following views are in this track:\

\
Raw Signal\
Density graph (bedGraph) of signal enrichment based on a normalized aligned \ read density (counts per million mapped reads for each subtrack). This \ normalized measure assists in visualizing the relative amount of a given \ transcript across multiple samples. \
Alignments\
The Alignments view shows reads mapped to the genome. \
\ \

Methods

\

\ The group at CRG obtained RNA-seq reads, generated by Wang et al. \ (2008), from the Short Read Archive section of GEO at NCBI under accession \ number GSE12946. Using their GEM mapper program, CRG mapped the \ RNA-seq reads to the genome and transcriptome (GENCODE Release 3, October \ 2009 Freeze). GEM mapper was run using default parameters and allowing up \ to two mismatches in the read alignments. Since mapping to the transcriptome \ depends on length of the reads mapped, reads were only mapped for the \ 14 tissues or cell lines where reads were of length 32 bp. This excluded\ reads from MAQC human cell lines (mixed human brain) and MAQC UHR (mixed \ human cell lines). \ \

Credits

\

\ These data were generated by Chris Burge's lab at the Massachusetts Institute\ of Technology and by Roderic Guigó's lab at the Center for Genomic\ Regulation (CRG) in Barcelona, Spain. GTF files of the mapped data were\ provided by Thomas Derrien and Paolo Ribeca from CRG. GEM mapper software \ can be obtained\ here.\ \

References

\

\ Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB.\ \ Alternative isoform regulation in human tissue transcriptomes.\ Nature. 2008 Nov 27;456(7221):470-6.\ PMID: 18978772; PMC: PMC2593745\

\ expression 1 compositeTrack on\ configurable on\ dimensions dimensionY=tissueType\ dragAndDrop subTracks\ group expression\ longLabel Burge Lab RNA-seq Aligned by GEM Mapper\ noInherit on\ priority 8\ shortLabel Burge RNA-seq\ sortOrder view=+ tissueType=+\ subGroup1 view Views RawSignal=Raw_Signal Alignments=Alignments\ subGroup2 tissueType Tissue_Type BT474=BT474 HME=HME MB435=MB435 MCF7=MCF7 T47D=T47D adipose=Adipose brain=Brain breast=Breast colon=Colon heart=Heart liver=Liver lymphNode=LymphNode skelMuscle=SkelMuscle testes=Testes\ track burgeRnaSeqGemMapperAlign\ type bed 12\ visibility hide\ dhcHumDerDenAncCcdsNonsynFixed CC Nonsyn Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: CCDS Non-synonymous 3 8 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: CCDS Non-synonymous\ parent dhcHumDerDenAncCcds\ shortLabel CC Nonsyn Fxd\ subGroups view=Ccds subset=CcdsNonsyn freq=Fixed\ track dhcHumDerDenAncCcdsNonsynFixed\ wgEncodeAwgDnaseUwCd20UniPk CD20+ DNase narrowPeak CD20+ B cell DNaseI HS Uniform Peaks from ENCODE/Analysis 1 8 80 80 80 167 167 167 1 0 0 regulation 1 color 80,80,80\ longLabel CD20+ B cell DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform on\ shortLabel CD20+ DNase\ subGroups tier=a25 cellType=a25CD20\ track wgEncodeAwgDnaseUwCd20UniPk\ placentalChainNetViewchain Chains bed 3 Non-primate Placental Mammal Genomes, Chain and Net Alignments 3 8 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Non-primate Placental Mammal Genomes, Chain and Net Alignments\ parent placentalChainNet\ shortLabel Chains\ spectrum on\ track placentalChainNetViewchain\ view chain\ visibility pack\ unipDisulfBond Disulf. Bonds bigBed 12 + UniProt Disulfide Bonds 1 8 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg19/uniprot/unipDisulfBond.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ longLabel UniProt Disulfide Bonds\ parent uniprot\ priority 8\ shortLabel Disulf. Bonds\ track unipDisulfBond\ type bigBed 12 +\ visibility dense\ unipDomain Domains bigBed 12 + UniProt Domains 1 8 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg19/uniprot/unipDomain.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ longLabel UniProt Domains\ parent uniprot\ priority 8\ shortLabel Domains\ track unipDomain\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#family_and_domains" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility dense\ wgEncodeDukeMapabilityUniqueness35bp Duke Uniq 35 bigWig 0.000000 1.000000 Uniqueness of 35bp Windows from ENCODE/OpenChrom(Duke) 2 8 0 0 0 127 127 127 0 0 0 map 0 longLabel Uniqueness of 35bp Windows from ENCODE/OpenChrom(Duke)\ parent wgEncodeMapabilityViewDuniq\ shortLabel Duke Uniq 35\ subGroups view=DUNIQ win=w035 lab=DUKE\ track wgEncodeDukeMapabilityUniqueness35bp\ type bigWig 0.000000 1.000000\ affyExonProbeFree Free Probes bed 10 Affymetrix Human Exon Array Free Probes 1 8 0 100 0 127 177 127 0 0 0 expression 1 color 0,100,0\ longLabel Affymetrix Human Exon Array Free Probes\ parent affyExonProbe off\ shortLabel Free Probes\ subGroups view=v2Probe level=L4Free\ track affyExonProbeFree\ type bed 10\ geneHancerClusteredInteractions GH Clusters bigInteract Clustered interactions of GeneHancer regulatory elements and genes 3 8 0 0 0 127 127 127 0 0 0 https://www.genecards.org/cgi-bin/carddisp.pl?gene=$&keywords=$&prefilter=enhancers#enhancers regulation 1 bigDataUrl /gbdb/hg19/geneHancer/geneHancerInteractionsAll.v2.hg19.bb\ longLabel Clustered interactions of GeneHancer regulatory elements and genes\ parent ghClusteredInteraction off\ shortLabel GH Clusters\ subGroups set=b_ALL view=d_I\ track geneHancerClusteredInteractions\ urlLabel Interaction in GeneCards\ wgEncodeOpenChromSynthGlioblaPk Gliobla Syn Pk bed 9 + Gliobla DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom 0 8 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Gliobla DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom\ origAssembly hg19\ parent wgEncodeOpenChromSynth off\ shortLabel Gliobla Syn Pk\ subGroups cellType=t3GLIOBLA treatment=aNone\ track wgEncodeOpenChromSynthGlioblaPk\ type bed 9 +\ wgEncodeFsuRepliChipGm06990WaveSignalRep1 GM06990 1 bigWig -4.089016 1.564421 GM06990 Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU 0 8 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU\ parent wgEncodeFsuRepliChip off\ shortLabel GM06990 1\ subGroups view=WaveSignal cellType=t3GM06990 rep=rep1\ track wgEncodeFsuRepliChipGm06990WaveSignalRep1\ type bigWig -4.089016 1.564421\ wgEncodeGisRnaPetGm12878NucleusPapAlnRep1 GM12 nucl pA+ A 1 bam GM12878 nucleus polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS 0 8 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleus polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel GM12 nucl pA+ A 1\ subGroups view=v3Alignments cellType=aGM12878 cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetGm12878NucleusPapAlnRep1\ type bam\ wgEncodeAwgTfbsSydhGm12878Brca1a300IggmusUniPk GM12878 BRCA1 narrowPeak GM12878 TFBS Uniform Peaks of BRCA1_(A300-000A) from ENCODE/Stanford/Analysis 1 8 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of BRCA1_(A300-000A) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 BRCA1\ subGroups tier=a10 cellType=a10GM12878 factor=BRCA1 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Brca1a300IggmusUniPk\ wgEncodeBroadHistoneGm12878H3k04me1StdSigV2 GM12878 H3K4m1 bigWig 0.040000 11792.000000 GM12878 H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 8 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg18\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel GM12878 H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H3k04me1StdSigV2\ type bigWig 0.040000 11792.000000\ wgEncodeSunyRipSeqGm12878Pabpc1Pk GM12878 PABPC1 Pk broadPeak GM12878 PABPC1 RIP-seq Analysis from ENCODE/SUNY 2 8 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 PABPC1 RIP-seq Analysis from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewPeaks on\ shortLabel GM12878 PABPC1 Pk\ subGroups view=Peaks factor=PABPC1 cellType=t1GM12878 rep=Pooled\ track wgEncodeSunyRipSeqGm12878Pabpc1Pk\ type broadPeak\ wgEncodeOpenChromChipGm12878Pol2Sig GM12878 Pol2 DS bigWig 0.000000 3.535200 GM12878 Pol2 TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 8 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Pol2 TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal\ shortLabel GM12878 Pol2 DS\ subGroups treatment=AANONE view=SIG factor=POL2 cellType=t1GM12878\ track wgEncodeOpenChromChipGm12878Pol2Sig\ type bigWig 0.000000 3.535200\ wgEncodeUwRepliSeqGm12878ValleysRep1 GM12878 Vly 1 bed 9 GM12878 Repli-seq Valleys Rep 1 from ENCODE/UW 0 8 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Repli-seq Valleys Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewValleys off\ shortLabel GM12878 Vly 1\ subGroups view=v3Valleys cellType=t1GM12878 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm12878ValleysRep1\ type bed 9\ wgEncodeCaltechRnaSeqGm12878R2x75Th1014Il400USigRep2V4 GM78 400 Sg 2 bigWig 0.017500 93589.914062 GM12878 400 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech 2 8 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 400 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel GM78 400 Sg 2\ subGroups view=Signal cellType=t1GM12878 insertLength=il400 readType=a1R2x75400 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12878R2x75Th1014Il400USigRep2V4\ type bigWig 0.017500 93589.914062\ wgEncodeHaibTfbsGm12878Atf3Pcr1xRawRep2 GM78 ATF3 PCR1 2 bigWig 0.219721 145.399994 GM12878 ATF3 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 8 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ATF3 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 ATF3 PCR1 2\ subGroups view=RawSignal factor=ATF3 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Atf3Pcr1xRawRep2\ type bigWig 0.219721 145.399994\ wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaPlusRawSigRep2 GM78 cel pA- + 2 bigWig 1.000000 2689835.000000 GM12878 whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 8 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig on\ shortLabel GM78 cel pA- + 2\ subGroups view=PlusSignal cellType=t1GM12878 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 2689835.000000\ wgEncodeSydhTfbsGm12878CfosStdSig GM78 cFOS Std bigWig 0.000000 9471.500000 GM12878 c-FOS Standard ChIP-seq Signal from ENCODE/SYDH 2 8 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 c-FOS Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 cFOS Std\ subGroups view=Signal factor=CFOS cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878CfosStdSig\ type bigWig 0.000000 9471.500000\ wgEncodeCshlShortRnaSeqGm12878ChromatinTapMinusRep4 GM78 chrm TAP - 2 bigWig 1.000000 9070952.000000 GM12878 TAP-only chromatin small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 8 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only chromatin small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel GM78 chrm TAP - 2\ subGroups view=MinusSignal cellType=t1GM12878 localization=CHROMATIN protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqGm12878ChromatinTapMinusRep4\ type bigWig 1.000000 9070952.000000\ wgEncodeRikenCageGm12878CytosolPapMinusSignalRep1 GM78 cyto pA+ - 1 bigWig 1.000000 461584.000000 GM12878 cytosol polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 8 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 cytosol polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel GM78 cyto pA+ - 1\ subGroups view=MinusRawSignal cellType=t1GM12878 localization=cytosol rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageGm12878CytosolPapMinusSignalRep1\ type bigWig 1.000000 461584.000000\ wgEncodeUwHistoneGm12878H3k27me3StdPkRep1 GM78 H3K27M3 Pk 1 narrowPeak GM12878 H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 8 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks on\ shortLabel GM78 H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t1GM12878 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12878H3k27me3StdPkRep1\ type narrowPeak\ wgEncodeUncBsuProtGencH1hescCellMudpitmPepMapGcFt H1-hESC Ce M PTM bigBed 12 H1-hESC MudPIT ProtG GENCODE10 Hg19 PTM Mapping from ENCODE/UNC/BSU 2 8 0 107 27 127 181 141 1 0 0 expression 1 color 0,107,27\ longLabel H1-hESC MudPIT ProtG GENCODE10 Hg19 PTM Mapping from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtGencViewmPepMapGcFt\ shortLabel H1-hESC Ce M PTM\ subGroups view=mPepMapGcFt cellType=H1HESC localization=CELL protocol=MUDPIT\ track wgEncodeUncBsuProtGencH1hescCellMudpitmPepMapGcFt\ type bigBed 12\ wgEncodeSunyAlbanyGeneStH1hescElavl1RbpAssocRnaV2 H1hESC ELAVL1 broadPeak H1-hESC ELAV1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 8 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC ELAV1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt on\ shortLabel H1hESC ELAVL1\ subGroups factor=ELAVL1 cellType=t1H1HESC\ track wgEncodeSunyAlbanyGeneStH1hescElavl1RbpAssocRnaV2\ type broadPeak\ wgEncodeUwDnaseH1hescPkRep1 H1hESC Pk 1 narrowPeak H1-hESC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 8 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks\ shortLabel H1hESC Pk 1\ subGroups view=Peaks cellType=t1H1HESC rep=rep1 treatment=None\ track wgEncodeUwDnaseH1hescPkRep1\ type narrowPeak\ hapmapSnpsMEX HapMap SNPs MEX bed 6 + HapMap SNPs from the MEX Population (Mexican Ancestry in Los Angeles, CA, US) 0 8 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HapMap SNPs from the MEX Population (Mexican Ancestry in Los Angeles, CA, US)\ parent hapmapSnps\ priority 8\ shortLabel HapMap SNPs MEX\ track hapmapSnpsMEX\ lincRNAsCTHeart Heart bed 5 + lincRNAs from heart 1 8 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from heart\ parent lincRNAsAllCellType on\ shortLabel Heart\ subGroups view=lincRNAsRefseqExp tissueType=heart\ track lincRNAsCTHeart\ wgEncodeGisChiaPetHelas3Pol2SigRep1 HeLaS3 Pol2 Sig 1 bigWig 1.000000 8395.000000 HeLa-S3 Pol2 ChIA-PET Signal Rep 1 from ENCODE/GIS-Ruan 2 8 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Pol2 ChIA-PET Signal Rep 1 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetSignal on\ shortLabel HeLaS3 Pol2 Sig 1\ subGroups view=Signal factor=POL2 cellType=t2HELAS3 rep=rep1\ track wgEncodeGisChiaPetHelas3Pol2SigRep1\ type bigWig 1.000000 8395.000000\ wgEncodeUwAffyExonArrayHepg2SimpleSignalRep1 HepG2 1 broadPeak HepG2 Exon array Signal Rep 1 from ENCODE/UW 0 8 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HepG2 1\ subGroups cellType=t2HEPG2 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHepg2SimpleSignalRep1\ type broadPeak\ wgEncodeHaibGenotypeHuvecRegionsRep2 HUVEC 1 bed 9 + HUVEC Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB 0 8 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HUVEC Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HUVEC 1\ subGroups cellType=t2HUVEC obtainedBy=HudsonAlpha treatment=None rep=rep1\ track wgEncodeHaibGenotypeHuvecRegionsRep2\ type bed 9 +\ wgEncodeHaibMethyl450Imr90SitesRep1 IMR90 bed 9 IMR90 Methylation 450K Bead Array from ENCODE/HAIB 1 8 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel IMR90\ subGroups cellType=t2IMR90 obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450Imr90SitesRep1\ type bed 9\ wgEncodeAwgSegmentationCombinedK562 K562 Combined bed 9 . K562 Genome Segmentation by Combined Segway+ChromHMM from ENCODE/Analysis 0 8 0 0 0 127 127 127 0 0 0 regulation 1 longLabel K562 Genome Segmentation by Combined Segway+ChromHMM from ENCODE/Analysis\ parent wgEncodeAwgSegmentation on\ shortLabel K562 Combined\ subGroups tier=t1 cellType=t1K562 method=Combined\ track wgEncodeAwgSegmentationCombinedK562\ type bed 9 .\ wgEncodeUwTfbsK562CtcfStdHotspotsRep1 K562 CTCF Ht 1 broadPeak K562 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 8 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot on\ shortLabel K562 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t1K562 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsK562CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeGisRnaSeqK562CytosolPapAlnRep2 K562 cyto pA+ 2 bam K562 cytosol polyA+ RNA-seq Alignments rep 2 from ENCODE/GIS 1 8 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA+ RNA-seq Alignments rep 2 from ENCODE/GIS\ parent wgEncodeGisRnaSeqViewAlignments on\ shortLabel K562 cyto pA+ 2\ subGroups view=Alignments cellType=t1K562 rnaExtract=longPolyA rep=rep2 localization=cytosol\ track wgEncodeGisRnaSeqK562CytosolPapAlnRep2\ type bam\ wgEncodeAffyRnaChipFiltTransfragsK562CytosolLongnonpolya K562 cyto pA- broadPeak K562 cytosol polyA- Microarray Transfrags from ENCODE Affy/CSHL 3 8 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA- Microarray Transfrags from ENCODE Affy/CSHL\ parent wgEncodeAffyRnaChipViewFiltTransfrags\ shortLabel K562 cyto pA-\ subGroups view=FiltTransfrags cellType=t1K562 localization=bCYTOSOL rnaExtract=longNonPolyA\ track wgEncodeAffyRnaChipFiltTransfragsK562CytosolLongnonpolya\ type broadPeak\ wgEncodeOpenChromFaireK562Sig K562 FAIRE DS bigWig 0.000000 0.392200 K562 FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 8 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal\ shortLabel K562 FAIRE DS\ subGroups view=SIG cellType=t1K562 treatment=AANONE\ track wgEncodeOpenChromFaireK562Sig\ type bigWig 0.000000 0.392200\ wgEncodeOpenChromDnaseK562G1phaseSig K562 G1 DS bigWig 0.000000 0.855200 K562 G1 phase DNaseI HS Density Signal from ENCODE/Duke 2 8 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 G1 phase DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel K562 G1 DS\ subGroups view=SIG cellType=t1K562 treatment=G1PHASE\ track wgEncodeOpenChromDnaseK562G1phaseSig\ type bigWig 0.000000 0.855200\ wgEncodeSydhHistoneK562H3k27me3bUcdSig K562 H3K27me3 bigWig 1.000000 4955.000000 K562 H3K27me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 8 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K27me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal on\ shortLabel K562 H3K27me3\ subGroups view=Signal factor=H3K27me3B cellType=aK562 control=UCD treatment=NONE\ track wgEncodeSydhHistoneK562H3k27me3bUcdSig\ type bigWig 1.000000 4955.000000\ wgEncodeSunyAlbanyTilingK562RipinputRbpAssocRna K562 Input broadPeak K562 Input RBP Associated RNA by Tiling Array from ENCODE/SUNY 3 8 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Input RBP Associated RNA by Tiling Array from ENCODE/SUNY\ parent wgEncodeSunyAlbanyTilingView\ shortLabel K562 Input\ subGroups view=RbpAssocRna cellType=t1K562 antibody=ripInput\ track wgEncodeSunyAlbanyTilingK562RipinputRbpAssocRna\ type broadPeak\ wgEncodeUchicagoTfbsK562EjunbControlSig K562 JunB/GFP Sg bigWig -11520.261719 17224.816406 K562 JunB GFP-tag TFBS Signal from ENCODE/UChicago 2 8 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 JunB GFP-tag TFBS Signal from ENCODE/UChicago\ parent wgEncodeUchicagoTfbsViewSignal\ shortLabel K562 JunB/GFP Sg\ subGroups view=Signal factor=JunB cellType=K562 control=ControlJunB rep=repPOOLED\ track wgEncodeUchicagoTfbsK562EjunbControlSig\ type bigWig -11520.261719 17224.816406\ wgEncodeDukeAffyExonK562NabutSimpleSignalRep1 K562 NaBut 1 bigBed 6 + K562 NaBut Exon array Signal Rep 1 from ENCODE/Duke 0 8 46 0 184 150 127 219 1 0 0 expression 1 color 46,0,184\ longLabel K562 NaBut Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel K562 NaBut 1\ subGroups cellType=t1K562 treatment=NABUT rep=rep1\ track wgEncodeDukeAffyExonK562NabutSimpleSignalRep1\ type bigBed 6 +\ wgEncodeSydhRnaSeqK562Ifng6hPolyaRaw K562 pA+ Ng6h bigWig 0.000000 184050.000000 K562 polyA+ IFNg6h RNA-seq Raw Signal from ENCODE/SYDH 2 8 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 polyA+ IFNg6h RNA-seq Raw Signal from ENCODE/SYDH\ parent wgEncodeSydhRnaSeqViewSignal on\ shortLabel K562 pA+ Ng6h\ subGroups view=RawSignal cellType=t1K562 rnaExtract=polyA treatment=IFNg6h\ track wgEncodeSydhRnaSeqK562Ifng6hPolyaRaw\ type bigWig 0.000000 184050.000000\ dhcVcfHGDP00998 Karit. Variants vcfTabix Karitiana Individual (HGDP00998) Variant Calls 0 8 0 0 0 127 127 127 0 0 0 denisova 1 longLabel Karitiana Individual (HGDP00998) Variant Calls\ parent dhcVcfModern\ priority 8\ shortLabel Karit. Variants\ track dhcVcfHGDP00998\ vcfDoMaf off\ decodeMaleCarrier Male Carry bigWig 0.0 204.214 deCODE recombination map, male carrier 0 8 0 100 180 127 177 217 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 0 color 0,100,180\ configurable on\ longLabel deCODE recombination map, male carrier\ parent maleView\ priority 8\ shortLabel Male Carry\ subGroups view=male\ track decodeMaleCarrier\ type bigWig 0.0 204.214\ pgMd8Indel MD8 indels pgSnp MD8 Genome Variants indels 3 8 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MD8 Genome Variants indels\ origAssembly hg18\ parent pgSnpPSU\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel MD8 indels\ subGroups view=A_PSU id=AC_MD8 type=Indel\ track pgMd8Indel\ MGI_Exome_Capture_V4 MGI Easy V4 T bigBed MGI - Easy Exome Capture V4 Target Regions 1 8 220 38 127 237 146 191 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/MGI_Exome_Capture_V4.bb\ color 220,38,127\ longLabel MGI - Easy Exome Capture V4 Target Regions\ parent exomeProbesets off\ shortLabel MGI Easy V4 T\ track MGI_Exome_Capture_V4\ type bigBed\ visibility dense\ placentalChainNetViewnet Nets bed 3 Non-primate Placental Mammal Genomes, Chain and Net Alignments 1 8 0 0 0 255 255 0 0 0 0 compGeno 1 longLabel Non-primate Placental Mammal Genomes, Chain and Net Alignments\ parent placentalChainNet\ shortLabel Nets\ track placentalChainNetViewnet\ view net\ visibility dense\ uMassBrainHistoneSignalS5NeuP2pt8yrsF NeuN+ 2.8yrs F bigWig UMMS Brain Histone H3K4me3 (NeuN+ D5) Gender-female Age-2.8 2 8 41 158 41 148 206 148 0 0 0 regulation 0 color 41,158,41\ longLabel UMMS Brain Histone H3K4me3 (NeuN+ D5) Gender-female Age-2.8\ parent uMassBrainHistoneViewSignal\ shortLabel NeuN+ 2.8yrs F\ subGroups view=Signal donor=f_5 cellType=norm sex=female age=b_young\ track uMassBrainHistoneSignalS5NeuP2pt8yrsF\ type bigWig\ wgEncodeRegTxnCaltechRnaSeqNhekR2x75Il200SigPooled NHEK bigWig 0 65535 Transcription of NHEK cells from ENCODE 0 8 227 128 255 241 191 255 0 0 0 regulation 1 color 227,128,255\ longLabel Transcription of NHEK cells from ENCODE\ parent wgEncodeRegTxn\ priority 8\ shortLabel NHEK\ track wgEncodeRegTxnCaltechRnaSeqNhekR2x75Il200SigPooled\ type bigWig 0 65535\ wgEncodeBroadHmmNhekHMM NHEK ChromHMM bed 9 . NHEK Chromatin State Segmentation by HMM from ENCODE/Broad 0 8 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHEK Chromatin State Segmentation by HMM from ENCODE/Broad\ origAssembly hg18\ parent wgEncodeBroadHmm\ shortLabel NHEK ChromHMM\ subGroups cellType=t3NHEK\ track wgEncodeBroadHmmNhekHMM\ type bed 9 .\ noAFmutT No MaxAF Mutation: T bigWig -1.29334 0.75731 BayesDel v1 Score (without MaxAF): Mutation is T 0 8 230 152 22 242 203 138 0 0 0

Description

\ \

\ The "Prediction Scores" container track includes subtracks showing the results of prediction\ scores.

\ \

BayesDel

\

BayesDel is a deleteriousness meta-score for coding and non-coding variants, single nucleotide\ variants, and small insertion/deletions. The range of the score is from -1.29334 to 0.75731.\ The higher the score, the more likely the variant is pathogenic.

\ \

\ For gene discovery research, a universal cutoff value (0.0692655 with MaxAF, -0.0570105 without\ MaxAF) was obtained by maximizing sensitivity and specificity in classifying ClinVar variants;\ Version 1 (build date 2017-08-24).

\

\ For clinical variant classification, Bayesdel thresholds have been calculated for a variant to\ reach various levels of evidence; please refer to Pejaver et al. 2022 for general application\ of these scores in clinical applications.\

\ \

Display Conventions and Configuration

\ \

BayesDel

\

There are eight subtracks for the BayesDel track: four include pre-computed MaxAF-integrated BayesDel\ scores for missense variants, one for each base. The other four are of the same format, but scores\ are not MaxAF-integrated.

\ \

For SNVs, at each genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing the reference allele,\ (e.g. A to A) is always set to zero.

\ \

Note: There are cases in which a genomic position will have one value missing.\

\ \

When using this track, zoom in until you can see every base pair at the top of the display.\ Otherwise, there are several nucleotides per pixel under your mouse cursor and instead of an actual\ score, the tooltip text will show the average score of all nucleotides under the cursor. This is\ indicated by the prefix "~" in the mouseover.\

\ \

Data Access

\

BayesDel scores are available at the\ BayesDel website.\ \

Methods

\

BayesDel data was converted from the files provided on the\ BayesDel_170824 Database.\ The number 170824 is the date (2017-08-24) the scores were created. Both sets of BayesDel scores are\ available in this database, one integrated MaxAF (named BayesDel_170824_addAF) and one without\ (named BayesDel_170824_noAF). Data conversion was performed using\ \ custom Python scripts.\

\ \

Credits

\

Thanks to the BayesDel team for providing precomputed data, and to Tiana Pereira, Christopher\ Lee, Gerardo Perez, and Anna Benet-Pages of the Genome Browser team.

\ \

References

\

\ Feng BJ.\ \ PERCH: A Unified Framework for Disease Gene Prioritization.\ Hum Mutat. 2017 Mar;38(3):243-251.\ PMID: 27995669; PMC: PMC5299048\

\ \

\ Pejaver V, Byrne AB, Feng BJ, Pagel KA, Mooney SD, Karchin R, O'Donnell-Luria A, Harrison SM,\ Tavtigian SV, Greenblatt MS et al.\ \ Calibration of computational tools for missense variant pathogenicity classification and ClinGen\ recommendations for PP3/BP4 criteria.\ Am J Hum Genet. 2022 Dec 1;109(12):2163-2177.\ PMID: 36413997; PMC: PMC9748256\

\ \

\ Tian Y, Pesaran T, Chamberlin A, Fenwick RB, Li S, Gau CL, Chao EC, Lu HM, Black MH, Qian D.\ \ REVEL and BayesDel outperform other in silico meta-predictors for clinical variant\ classification.\ Sci Rep. 2019 Sep 4;9(1):12752.\ PMID: 31484976; PMC: PMC6726608\

\ phenDis 0 bigDataUrl /gbdb/hg19/bayesDel/NoAFBayesDelMutT.bw\ color 230, 152, 22\ html predictionScoresSuper\ longLabel BayesDel v1 Score (without MaxAF): Mutation is T\ maxHeightPixels 128:20:8\ parent bayesDel on\ shortLabel No MaxAF Mutation: T\ track noAFmutT\ type bigWig -1.29334 0.75731\ visibility hide\ windowingFunction mean+whiskers\ xenoMrna Other mRNAs psl xeno Non-Human mRNAs from GenBank 0 8 0 0 0 127 127 127 1 0 0

Description

\ \

\ This track displays translated blat alignments of vertebrate and\ invertebrate mRNA in\ \ GenBank from organisms other than human.\

\ \

Display Conventions and Configuration

\ \

\ This track follows the display conventions for\ \ PSL alignment tracks. In dense display mode, the items that\ are more darkly shaded indicate matches of better quality.\

\ \

\ The strand information (+/-) for this track is in two parts. The\ first + indicates the orientation of the query sequence whose\ translated protein produced the match (here always 5' to 3', hence +).\ The second + or - indicates the orientation of the matching\ translated genomic sequence. Because the two orientations of a DNA\ sequence give different predicted protein sequences, there are four\ combinations. ++ is not the same as --, nor is +- the same as -+.\

\ \

\ The description page for this track has a filter that can be used to change\ the display mode, alter the color, and include/exclude a subset of items\ within the track. This may be helpful when many items are shown in the track\ display, especially when only some are relevant to the current task.\

\ \

\ To use the filter:\

    \
  1. Type a term in one or more of the text boxes to filter the mRNA\ display. For example, to apply the filter to all mRNAs expressed in a specific\ organ, type the name of the organ in the tissue box. To view the list of\ valid terms for each text box, consult the table in the Table Browser that\ corresponds to the factor on which you wish to filter. For example, the\ "tissue" table contains all the types of tissues that can be\ entered into the tissue text box. Multiple terms may be entered at once,\ separated by a space. Wildcards may also be used in the filter.
    2. \
  2. If filtering on more than one value, choose the desired combination\ logic. If "and" is selected, only mRNAs that match all filter\ criteria will be highlighted. If "or" is selected, mRNAs that\ match any one of the filter criteria will be highlighted.
    3. \
  3. Choose the color or display characteristic that should be used to\ highlight or include/exclude the filtered items. If "exclude" is\ chosen, the browser will not display mRNAs that match the filter criteria.\ If "include" is selected, the browser will display only those\ mRNAs that match the filter criteria.
    4. \
\

\ \

\ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare mRNAs against the genomic sequence. For more\ information about this option, go to the\ \ Codon and Base Coloring for Alignment Tracks page.\ Several types of alignment gap may also be colored;\ for more information, go to the\ \ Alignment Insertion/Deletion Display Options page.\

\ \

Methods

\ \

\ The mRNAs were aligned against the human genome using translated blat.\ When a single mRNA aligned in multiple places, the alignment having the\ highest base identity was found. Only those alignments having a base\ identity level within 1% of the best and at least 25% base identity with the\ genomic sequence were kept.\

\ \

Credits

\ \

\ The mRNA track was produced at UCSC from mRNA sequence data\ submitted to the international public sequence databases by\ scientists worldwide.\

\ \

References

\

\ Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW.\ \ GenBank.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42.\ PMID: 23193287; PMC: PMC3531190\

\ \

\ Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\ GenBank: update.\ Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6.\ PMID: 14681350; PMC: PMC308779\

\ \

\ Kent WJ.\ BLAT - the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

\ rna 1 baseColorUseCds genbank\ baseColorUseSequence genbank\ group rna\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Non-Human mRNAs from GenBank\ priority 8\ shortLabel Other mRNAs\ showDiffBasesAllScales .\ spectrum on\ track xenoMrna\ type psl xeno\ visibility hide\ iscaPathogenic Pathogenic gvf ClinGen CNVs: Pathogenic 3 8 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/?term=$$ phenDis 1 longLabel ClinGen CNVs: Pathogenic\ parent iscaViewDetail\ shortLabel Pathogenic\ subGroups view=cnv class=path level=sub\ track iscaPathogenic\ placentalChainNet Placental Chain/Net bed 3 Non-primate Placental Mammal Genomes, Chain and Net Alignments 0 8 0 0 0 255 255 0 0 0 0

Description

\

Chain Track

\

\ The chain track shows alignments of human (Feb. 2009 (GRCh37/hg19)) to\ other genomes using a gap scoring system that allows longer gaps \ than traditional affine gap scoring systems. It can also tolerate gaps in both\ human and the other genome simultaneously. These \ "double-sided" gaps can be caused by local inversions and \ overlapping deletions in both species. \

\ The chain track displays boxes joined together by either single or\ double lines. The boxes represent aligning regions.\ Single lines indicate gaps that are largely due to a deletion in the\ other assembly or an insertion in the human assembly.\ Double lines represent more complex gaps that involve substantial\ sequence in both species. This may result from inversions, overlapping\ deletions, an abundance of local mutation, or an unsequenced gap in one\ species. In cases where multiple chains align over a particular region of\ the other genome, the chains with single-lined gaps are often \ due to processed pseudogenes, while chains with double-lined gaps are more \ often due to paralogs and unprocessed pseudogenes.

\

\ In the "pack" and "full" display\ modes, the individual feature names indicate the chromosome, strand, and\ location (in thousands) of the match for each matching alignment.

\ \

Net Track

\

\ The net track shows the best human/other chain for \ every part of the other genome. It is useful for\ finding orthologous regions and for studying genome\ rearrangement. The human sequence used in this annotation is from\ the Feb. 2009 (GRCh37/hg19) assembly.

\ \

Display Conventions and Configuration

\

Chain Track

\

By default, the chains to chromosome-based assemblies are colored\ based on which chromosome they map to in the aligning organism. To turn\ off the coloring, check the "off" button next to: Color\ track based on chromosome.

\

\ To display only the chains of one chromosome in the aligning\ organism, enter the name of that chromosome (e.g. chr4) in box next to: \ Filter by chromosome.

\ \

Net Track

\

\ In full display mode, the top-level (level 1)\ chains are the largest, highest-scoring chains that\ span this region. In many cases gaps exist in the\ top-level chain. When possible, these are filled in by\ other chains that are displayed at level 2. The gaps in \ level 2 chains may be filled by level 3 chains and so\ forth.

\

\ In the graphical display, the boxes represent ungapped \ alignments; the lines represent gaps. Click\ on a box to view detailed information about the chain\ as a whole; click on a line to display information\ about the gap. The detailed information is useful in determining\ the cause of the gap or, for lower level chains, the genomic\ rearrangement.

\

\ Individual items in the display are categorized as one of four types\ (other than gap):

\

    \
  • Top - the best, longest match. Displayed on level 1.\
  • Syn - line-ups on the same chromosome as the gap in the level above\ it.\
  • Inv - a line-up on the same chromosome as the gap above it, but in \ the opposite orientation.\
  • NonSyn - a match to a chromosome different from the gap in the \ level above.\

\ \

Methods

\

Chain track

\

\ Transposons that have been inserted since the human/other\ split were removed from the assemblies. The abbreviated genomes were\ aligned with lastz, and the transposons were added back in.\ The resulting alignments were converted into axt format using the lavToAxt\ program. The axt alignments were fed into axtChain, which organizes all\ alignments between a single human chromosome and a single\ chromosome from the other genome into a group and creates a kd-tree out\ of the gapless subsections (blocks) of the alignments. A dynamic program\ was then run over the kd-trees to find the maximally scoring chains of these\ blocks.\ \ \ \ Chains scoring below a minimum score of '5000' were discarded;\ the remaining chains are displayed in this track. The linear gap\ matrix used with axtChain:
\ 

-linearGap=loose\
\
tablesize    11\
smallSize   111\
position  1   2   3   11  111  2111  12111  32111  72111  152111  252111\
qGap    325 360 400  450  600  1100   3600   7600  15600   31600   56600\
tGap    325 360 400  450  600  1100   3600   7600  15600   31600   56600\
bothGap 625 660 700  750  900  1400   4000   8000  16000   32000   57000\
\ \ See also: lastz parameters used in these alignments,\ and chain minimum score and gap parameters used in these alignments.\

\ \

Net track

\

\ Chains were derived from lastz alignments, using the methods\ described on the chain tracks description pages, and sorted with the \ highest-scoring chains in the genome ranked first. The program\ chainNet was then used to place the chains one at a time, trimming them as \ necessary to fit into sections not already covered by a higher-scoring chain. \ During this process, a natural hierarchy emerged in which a chain that filled \ a gap in a higher-scoring chain was placed underneath that chain. The program \ netSyntenic was used to fill in information about the relationship between \ higher- and lower-level chains, such as whether a lower-level\ chain was syntenic or inverted relative to the higher-level chain. \ The program netClass was then used to fill in how much of the gaps and chains \ contained Ns (sequencing gaps) in one or both species and how much\ was filled with transposons inserted before and after the two organisms \ diverged.

\ \

Credits

\

\ Lastz (previously known as blastz) was developed at\ Pennsylvania State University by \ Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from\ Ross Hardison.

\

\ Lineage-specific repeats were identified by Arian Smit and his \ RepeatMasker\ program.

\

\ The axtChain program was developed at the University of California at \ Santa Cruz by Jim Kent with advice from Webb Miller and David Haussler.

\

\ The browser display and database storage of the chains and nets were created\ by Robert Baertsch and Jim Kent.

\

\ The chainNet, netSyntenic, and netClass programs were\ developed at the University of California\ Santa Cruz by Jim Kent.

\

\ \

References

\

\ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput. 2002:115-26.\ PMID: 11928468\

\ \

\ Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\ Evolution's cauldron:\ duplication, deletion, and rearrangement in the mouse and human genomes.\ Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\ PMID: 14500911; PMC: PMC208784\

\ \

\ Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC,\ Haussler D, Miller W.\ Human-mouse alignments with BLASTZ.\ Genome Res. 2003 Jan;13(1):103-7.\ PMID: 12529312; PMC: PMC430961\

\ compGeno 1 altColor 255,255,0\ chainLinearGap loose\ chainMinScore 5000\ color 0,0,0\ compositeTrack on\ configurable on\ dimensions dimensionX=clade dimensionY=species\ dragAndDrop subTracks\ group compGeno\ html placentalChainNet\ longLabel Non-primate Placental Mammal Genomes, Chain and Net Alignments\ noInherit on\ priority 8\ shortLabel Placental Chain/Net\ sortOrder species=+ view=+ clade=+\ subGroup1 view Views chain=Chains net=Nets\ subGroup2 species Species s000=Guinea_pig s001=Guinea_pig s002=Chinchilla s003=Chinese_hamster s004a=Chinese_hamster_CHOv1 s004b=Chinese_hamster_CHOv2 s004c=RegenCHO1 s005a=Kangaroo_rat s005b=Beaver s006=Malayan_flying_lemur s007=Naked_mole-rat s008=Naked_mole-rat s0081=Damara_mole-rat s009=Lesser_Egyptian_jerboa s010=Golden_hamster s011=Prairie_vole s012a=Mouse s012b=Mouse38B s012c=Mouse s013=Mouse s014=Mouse s015=Mouse s016=Mouse s017=Upper_Galilee_mountains_blind_mole_rat s018=Pika s019=Pika s020=Brush-tailed_rat s021=Rabbit s022=Rabbit s023=Prairie_deer_mouse s024a=Rat s024b=RegenRn1 s024c=RegenRn0 s024d=Rat s025=Rat s026=Rat s027=Rat s028=Rat s029=Squirrel s030=Squirrel s031=Tree_shrew s032=Chinese_tree_shrew s033=Panda s034a=Dog s034b=Dog s034c=Dog s034d=Dog s035=Dog s036=Dog s037a=Dog s037b=Domestic_cat s037c=Cat s038=Cat s039=Cat s040=Cat s041=Cat s042=Weddell_seal s043=Ferret s043a=Southern_sea_otter s044=Hawaiian_monk_seal s045=Pacific_walrus s046=Amur_tiger s047=Polar_bear s048=Minke_whale s049=Bison s050=Wild_yak s051a=Cow s051b=Cow s052=Cow s053=Cow s054=Cow s055=Cow s056=Cow s057=Cow s058=Cow s059=Cow s060=Water_buffalo s061=Bactrian_camel s062=Domestic_goat s063=Yangtze_river_dolphin s064=Killer_whale s065a=Sheep s065b=Sheep s065c=Sheep s065d=Sheep s067=Tibetan_antelope s068=Sperm_whale s069=Pig s070=Pig s071=Pig s072=Pig s073=Dolphin s074=Dolphin s075=Alpaca s076=Alpaca s077=Straw_colored_fruit_bat s078=Big_brown_bat s079=Indian_false_vampire s080=Brandt's_myotis_(bat) s081=David's_myotis_(bat) s082=Microbat s083=Microbat s084=Black_flying-fox s085=Parnell's_mustached_bat s086=Megabat s087=Greater_horseshoe_bat s088=Egyptian_rousette s089=Star-nosed_mole s090=Hedgehog s091=Hedgehog s092=Chinese_pangolin s093=Shrew s094=Shrew s095=White_rhinoceros s096a=Horse s096b=Horse s096c=Horse s098=Przewalski_horse s099=Sloth s100=Armadillo s101=Armadillo s102=Armadillo s103=Cape_golden_mole s104=Tenrec s105=Tenrec s106=Cape_elephant_shrew s107=Elephant s108=Elephant s109a=Asiatic_elephant s109b=Elephant s110=Aardvark s111=Rock_hyrax s112=Manatee\ subGroup3 clade Clade c00=Euarchontoglires c01=Carnivora c02=Cetartiodactyla c03=Chiroptera c04=Laurasiatheria c05=Perissodactyla c06=Xenarthra c07=Afrotheria\ track placentalChainNet\ type bed 3\ visibility hide\ polyASeqSitesMaqcBrain1Rev PolyA-Seq MaqcBrain1 bigWig 0.250000 15009.809570 Poly(A)-tail sequencing of MAQC Brain (replicate 1) from Merck (Rev strand) 2 8 0 0 0 127 127 127 0 0 0 rna 0 color 0,0,0\ longLabel Poly(A)-tail sequencing of MAQC Brain (replicate 1) from Merck (Rev strand)\ parent polyASeqSitesSignalView\ shortLabel PolyA-Seq MaqcBrain1\ subGroups view=Signal tissType=MaqcBrain1 strand=rev\ track polyASeqSitesMaqcBrain1Rev\ type bigWig 0.250000 15009.809570\ prsT1Diabetes PRS-E T1 Diabetes bigBed 8 + Polygenic Risk Scores eMERGE: T1 Diabetes 1 8 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg19/prsEmerge/t1d.bb\ longLabel Polygenic Risk Scores eMERGE: T1 Diabetes\ parent prsEmerge pack\ shortLabel PRS-E T1 Diabetes\ track prsT1Diabetes\ type bigBed 8 +\ ncbiRefSeqSelect RefSeq Select and MANE genePred NCBI RefSeq Select and MANE subset: A single representative transcript 1 8 20 20 160 137 137 207 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 20,20,160\ idXref ncbiRefSeqLink mrnaAcc name\ longLabel NCBI RefSeq Select and MANE subset: A single representative transcript\ parent refSeqComposite off\ priority 8\ shortLabel RefSeq Select and MANE\ track ncbiRefSeqSelect\ trackHandler ncbiRefSeq\ type genePred\ burgeRnaSeqGemMapperAlignBreast RNA-seq Breast bed 12 Burge Lab RNA-seq 32mer Reads from Breast 1 8 12 12 120 133 133 187 0 0 0 expression 1 longLabel Burge Lab RNA-seq 32mer Reads from Breast\ parent burgeRnaSeqGemMapperAlignViewAlignments on\ shortLabel RNA-seq Breast\ subGroups view=Alignments tissueType=breast\ track burgeRnaSeqGemMapperAlignBreast\ gnomadGenomes50XPercentage Sample % > 50X bigWig 0 1 gnomAD Percentage of Genome Samples with at least 50X Coverage 0 8 45 0 210 150 127 232 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.genomes.coverage.depth50.bw\ color 45,0,210\ longLabel gnomAD Percentage of Genome Samples with at least 50X Coverage\ parent gnomadGenomesReadDepthPct off\ priority 8\ shortLabel Sample % > 50X\ subGroups view=gRDepth\ track gnomadGenomes50XPercentage\ gnomadExomes50XPercentage Sample % > 50X bigWig 0 1 gnomAD Percentage of Exome Samples with at least 50X Coverage 0 8 45 0 210 150 127 232 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.exomes.coverage.depth50.bw\ color 45,0,210\ longLabel gnomAD Percentage of Exome Samples with at least 50X Coverage\ parent gnomadExomesReadDepthPct off\ priority 8\ shortLabel Sample % > 50X\ subGroups view=eRDepth\ track gnomadExomes50XPercentage\ chainGalGal3 Chicken Chain chain galGal3 Chicken (May 2006 (WUGSC 2.1/galGal3)) Chained Alignments 3 9 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Chicken (May 2006 (WUGSC 2.1/galGal3)) Chained Alignments\ otherDb galGal3\ parent vertebrateChainNetViewchain off\ shortLabel Chicken Chain\ subGroups view=chain species=s010 clade=c01\ track chainGalGal3\ type chain galGal3\ chainMacFas5 Crab-eating macaque Chain chain macFas5 Crab-eating macaque (Jun. 2013 (Macaca_fascicularis_5.0/macFas5)) Chained Alignments 3 9 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Crab-eating macaque (Jun. 2013 (Macaca_fascicularis_5.0/macFas5)) Chained Alignments\ otherDb macFas5\ parent primateChainNetViewchain off\ shortLabel Crab-eating macaque Chain\ subGroups view=chain species=s020 clade=c01\ track chainMacFas5\ type chain macFas5\ chainOryCun2 Rabbit Chain chain oryCun2 Rabbit (Apr. 2009 (Broad/oryCun2)) Chained Alignments 3 9 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Rabbit (Apr. 2009 (Broad/oryCun2)) Chained Alignments\ otherDb oryCun2\ parent placentalChainNetViewchain off\ shortLabel Rabbit Chain\ subGroups view=chain species=s021 clade=c00\ track chainOryCun2\ type chain oryCun2\ encTfChipPkENCFF335GSE A549 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in A549 from ENCODE 3 (ENCFF335GSE) 1 9 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in A549 from ENCODE 3 (ENCFF335GSE)\ parent encTfChipPk off\ shortLabel A549 CTCF 1\ subGroups cellType=A549 factor=CTCF\ track encTfChipPkENCFF335GSE\ wgEncodeHaibRnaSeqA549Dex1nmRawRep1 A549 DEX1nM 1 bigWig 0.120431 1351.449951 A549 DEX 1 hr 1 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 9 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 DEX 1 hr 1 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal on\ shortLabel A549 DEX1nM 1\ subGroups view=RawSignal cellType=t2A549 treatment=DEX1NM rep=rep1\ track wgEncodeHaibRnaSeqA549Dex1nmRawRep1\ type bigWig 0.120431 1351.449951\ unipModif AA Modifications bigBed 12 + UniProt Amino Acid Modifications 1 9 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg19/uniprot/unipModif.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ longLabel UniProt Amino Acid Modifications\ parent uniprot\ priority 9\ shortLabel AA Modifications\ track unipModif\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#aaMod_section" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility dense\ agilentCghSnp2x400k Ag SNP 2x400k bed 9 . Agilent SurePrint G3 Human CGH+SNP Microarray 2x400K AMADID 028081 0 9 0 0 128 127 127 191 0 0 0 varRep 1 color 0,0,128\ itemRgb on\ longLabel Agilent SurePrint G3 Human CGH+SNP Microarray 2x400K AMADID 028081\ parent genotypeArrays\ priority 9\ shortLabel Ag SNP 2x400k\ track agilentCghSnp2x400k\ type bed 9 .\ affyExonProbesetAmbiguous Ambiguous PS bed 12 Affymetrix Human Exon Array Ambiguous Probesets 1 9 218 112 214 236 183 234 0 0 0 expression 1 color 218,112,214\ longLabel Affymetrix Human Exon Array Ambiguous Probesets\ parent affyExonProbeset off\ shortLabel Ambiguous PS\ subGroups view=v1Probeset level=L5Ambiguous\ track affyExonProbesetAmbiguous\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_ctss_fwd AorticSmsToFgf2_00hr15minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_forward 0 9 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep3%20%28LK6%29.CNhs13568.12839-137B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12839-137B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_tpm_fwd AorticSmsToFgf2_00hr15minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_forward 1 9 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep3%20%28LK6%29.CNhs13568.12839-137B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12839-137B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4\ urlLabel FANTOM5 Details:\ gtexEqtlTissueBrainCerebelHemi brainCerebelHemi bed 9 + Expression QTL in Brain_Cerebellar_Hemisphere from GTEx V6 0 9 238 238 0 246 246 127 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 238,238,0\ idInUrlSql select gene from gtexEqtlTissueBrainCerebelHemi where name='%s'\ longLabel Expression QTL in Brain_Cerebellar_Hemisphere from GTEx V6\ parent gtexEqtlTissue on\ shortLabel brainCerebelHemi\ track gtexEqtlTissueBrainCerebelHemi\ dhcHumDerDenAncCcdsNonsynFixedDbSnp CC Nonsyn FxS bigBed 4 + Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: CCDS Non-synonymous 3 9 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: CCDS Non-synonymous\ parent dhcHumDerDenAncCcds\ shortLabel CC Nonsyn FxS\ subGroups view=Ccds subset=CcdsNonsyn freq=FixedDbSnp\ track dhcHumDerDenAncCcdsNonsynFixedDbSnp\ wgEncodeUwDgfCd20ro01778Hotspots CD20+ Hot broadPeak B cells CD20+ RO01778 DNaseI DGF Hotspots from ENCODE/UW 0 9 0 0 0 127 127 127 0 0 0 regulation 1 longLabel B cells CD20+ RO01778 DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel CD20+ Hot\ subGroups view=Hotspots cellType=t2BCELLSCD20RO01778 treatment=aNONE rep=rep1\ track wgEncodeUwDgfCd20ro01778Hotspots\ type broadPeak\ vertebrateChainNetViewchain Chains bed 3 Non-placental Vertebrate Genomes, Chain and Net Alignments 3 9 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Non-placental Vertebrate Genomes, Chain and Net Alignments\ parent vertebrateChainNet\ shortLabel Chains\ spectrum on\ track vertebrateChainNetViewchain\ view chain\ visibility pack\ wgEncodeCshlShortRnaSeqViewContigs Contigs bed 6 Small RNA-seq from ENCODE/Cold Spring Harbor Lab 2 9 0 0 0 127 127 127 0 0 0 expression 1 longLabel Small RNA-seq from ENCODE/Cold Spring Harbor Lab\ parent wgEncodeCshlShortRnaSeq\ shortLabel Contigs\ track wgEncodeCshlShortRnaSeqViewContigs\ type bed 6\ view Contigs\ visibility full\ wgEncodeCshlShortRnaSeq CSHL Small RNA-seq bed 3 Small RNA-seq from ENCODE/Cold Spring Harbor Lab 0 9 0 0 0 127 127 127 0 0 0
\

Description

\

\ The Cold Spring Harbor Lab (CSHL) small RNA track depicts short total RNA sequencing data from ENCODE tissues or sub-cellular compartments of ENCODE cell lines. The protocol used to generate these data produced directional reads from the 5' end of short RNAs, RNAs shorter than 200 nucleotides in length. Libraries were sequenced using an Illumina GAIIx. These data were generated by Cold Spring Harbor Laboratories as a part of the ENCODE Consortium. The ENCODE project seeks to identify and characterize all functional elements in the human genome. In many cases there are datasets of Cap Analysis of Gene Expression (CAGE, see the RIKEN CAGE Loc track), Long RNA-seq (RNAs longer than 200 nucleotides, see the CSHL Long RNA-seq track) and Pair-End di-TAG-RNA (PET-RNA, see the GIS RNA PET track) available from the same biological replicates.

\ \ \

Display Conventions and Configuration

\ \

\ This track is a multi-view composite track that contains multiple data types\ (views). For each view, there are multiple subtracks that\ display individually on the browser. Instructions for configuring multi-view\ tracks are here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide. Color differences among the views provide a visual cue for\ distinguishing between the different cell types and compartments.

\ \

This track contains the following views:\ \

\
Contigs
\
The Contigs are BED format files representing blocks of overlapping mapped reads from pooled biological replicates. The corresponding number of mapped reads, the RPKM (Reads Per kb per Million reads) value, and the non-parametric Irreproducible Discovery Rate (np-IDR) are reported for each contig.
\
Plus and Minus Signal
\
The Signal view shows the density of mapped reads on the plus and minus strands (wiggle format).
\
\ \

Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

\ More views may be found on the Downloads Page.\ \ \

Methods

\

Experimental Procedures

\

Cells were grown according to the approved ENCODE cell culture protocols. Short RNAs between 20 and 200 nucleotides were isolated from total RNA using a Qiagen RNeasy kit (Qiagen #74204) according to the manufacturer's protocol. Purified small RNAs were depleted of ribosomal RNA. To clone different populations the RNA was either left untreated (5' monophosphate RNAs), treated with Tobacco Alkaline Pyrophosphatase (both 5' monophosphate and capped RNAs), or treated with Calf Intestinal Alkaline Phosphatase followed by Tobacco Alkaline Pyrophosphatase (capped RNAs) prior to ligation of a 5' linker.\ The 3' ends were polyadenylated in vitro (or polycytidylated in the case of Generation 0 data) using Poly-A Polymerase.\ Anchored oligo-dT was used to prime the reverse transcriptase reaction and sequencing compatible ends were added in a subsequent PCR step. The libraries were sequenced on the Illumina GAIIx of Hi-Seq from the 5' ends for a total of either 36 or 101 cycles.\

\

\ Complete protocols are available in the Downloads Page.\

\ \ \ \

Data Processing and Analysis

\

Data from the Gingeras and Guigo labs were preprocessed to remove experimentally derived poly-A tails and Illumina 3' linkers from raw reads. The best alignment to the Illumina 3' linker for each read was determined. If the number of mismatches in the alignment was less than 20% of the aligned length, the read was clipped from the first aligned base. Pre-processed reads were mapped using the STAR algorithm. For a description of STAR, the source code and mapping parameters used, see the STAR project website. Reads mapping 10 times or less are reported in the Signal and Alignment files.

\ \

Mapped reads were discarded if they fell into one of the following categories: 1) it contained five or more consecutive A's, 2) it was less than 16 nucleotides in length, 3) it mapped to more than one genomic position (multiply-mapped reads), 4) it mapped upstream of genomically encoded poly-A sequences. The remaining reads were used both to call contigs and to produce expression values over GENCODE V7 exons. Contigs were generated from overlapping reads in pooled biological replicates.

\ \ \ Generation 0 data: \ Reads were trimmed to discard any bases following a quality score less than or equal to 20 and converted into FASTA format, thereby discarding quality information for the rest of the pipeline. As a result, the sequence quality scores in the BAM output are all displayed as "40" to indicate no quality information. The read lengths may exceed the insert sizes and consequently introduce 3' adapter sequence into the 3' end of the reads. The 3' sequencing adapter was removed from the reads using a custom clipper program (available at http://hannonlab.cshl.edu/fastx_toolkit/), which aligned the adapter sequence to the short-reads using up to two mismatches and no indels (insertions or deletions).. Regions that aligned were clipped off from the read. Terminal C nucleotides introduced at the 3' end of the RNA via the cloning procedure were also trimmed. Reads were aligned to the human genome (version hg19, using the gender build appropriate to the sample in question - female/male) using Bowtie (Langmead B et al., 2009). Reads that mapped 20 or fewer times with two or less mismatches were reported. See Release Notes for more information on Generation 0 datasets.\ \ \

Verification

\ \

The mapped data were visually inspected to verify the majority of the reads were mapping the 5' ends of annotated small RNA classes.\

\ \

Release Notes

\

\ This is Release 3 (July 2012) of CSHL Small RNA-seq with new data from the Gingeras lab. It includes twenty-two new cell lines:\ CD20+, CD34+_Mobilized, HAoAF, HAoEC, HCH, HFDPC, HMEpC, hMSC-AT, hMSC-UC, HOB, HPC-PL, HPIEpC, HSaVEC, HVMF, HWP, IMR90, Monocytes-CD14+, NHDF, NHEM.f_M2, NHEM_M2, SkMC, SK-N-SH.\ \ There are 53 new experiments in total. Release 3 data includes two new variations in protocol (CIP-TAP and untreated) to create different RNA populations.\

\

\ Many of the datasets produced by the Hannon lab (Generation 0 datasets) in Release 1 have been replaced by newly generated data from the Gingeras lab in Release 2. Of all Generation 0 datasets, only data from K562 and Prostate tissue are still displayed. All Generation 0 datasets are still available for download.

\ \

\ Discrepancies between hg18 and hg19 versions of Generation 0 CSHL small RNA data: The alignment pipeline for the CSHL small RNA data was updated upon the release of the human genome version hg19, resulting in a few noteworthy discrepancies with the hg18 dataset. First, mapping was conducted with the open-source Bowtie algorithm (http://bowtie-bio.sourceforge.net/index.shtml) rather than the custom NexAlign software. As each algorithm uses different strategies to perform alignments, the mapping results may vary even in genomic regions that do not differ between builds. The read processing pipeline also varies slightly in that we no longer retain information regarding whether a read was clipped off an adapter sequence. \

\ \ \

Credits

\ Hannon lab members: Katalin Fejes-Toth, Vihra Sotirova, Gordon Assaf, Jon Preall

\

Gingeras and Guigo laboratories: Carrie A. Davis, Lei-Hoon See, Wei Lin

\ \ Contacts:\
\
Jonathan Preall (Generation 0 Data from Hannon Lab) \ \
\
\ Carrie Davis (experimental)\ \
\
\ Alex Dobin (computational)\ \
\
\ Wei Lin (computational)\ \
\
\ Tom Gingeras (primary investigator)\ \

\
\
\ \

References

\ \

\ Fejes-Toth K, Sotirova V, Sachidanandam R, Assaf G, Hannon GJ, Kapranov P, Foissac S, Willingham AT, Duttagupta R, Dumais E, Gingeras TR. Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs. Nature. 2009;457(7232):1028-32.\

\ \ \

\ Langmead B, Trapnell C, Pop M, Salzberg SL.\ \ Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.\ Genome Biol. 2009;10(3):R25.\

\ \ \ \

Data Release Policy

\

Data users may freely use ENCODE data, but may not, without prior \ consent, submit publications that use an unpublished ENCODE dataset until \ nine months following the release of the dataset. This date is listed in \ the Restricted Until column in the track configuration page and the \ download page. The full data release policy \ for ENCODE is available \ here.

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Replicate bioRep=Cross_Lab
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Exp_ID dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
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bigWig 0.000000 3174.000000\ wgEncodeOpenChromDnaseK562G1phaseBaseOverlapSignal K562 G1 OS bigWig 0.000000 319.000000 K562 G1 phase DNaseI HS Overlap Signal from ENCODE/Duke 2 9 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 G1 phase DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel K562 G1 OS\ subGroups view=SIGBO cellType=t1K562 treatment=G1PHASE\ track wgEncodeOpenChromDnaseK562G1phaseBaseOverlapSignal\ type bigWig 0.000000 319.000000\ wgEncodeSydhHistoneK562InputUcdSig K562 Input bigWig 0.000000 12876.099609 K562 Input Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 9 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Input Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ origAssembly hg18\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel K562 Input\ subGroups view=Signal factor=INPUT cellType=aK562 control=UCD treatment=NONE\ track wgEncodeSydhHistoneK562InputUcdSig\ type bigWig 0.000000 12876.099609\ wgEncodeUchicagoTfbsK562EjundControlPk K562 JunD/GFP Pk narrowPeak K562 JunD GFP-tag TFBS Peaks from ENCODE/UChicago 3 9 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 JunD GFP-tag TFBS Peaks from ENCODE/UChicago\ parent wgEncodeUchicagoTfbsPeaks\ shortLabel K562 JunD/GFP Pk\ subGroups view=Peaks factor=JunD cellType=K562 control=ControlJunD rep=repPOOLED\ track wgEncodeUchicagoTfbsK562EjundControlPk\ type narrowPeak\ wgEncodeDukeAffyExonK562NabutSimpleSignalRep2 K562 Nabut 2 bigBed 6 + K562 NaBut Exon array Signal Rep 2 from ENCODE/Duke 0 9 46 0 184 150 127 219 1 0 0 expression 1 color 46,0,184\ longLabel K562 NaBut Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel K562 Nabut 2\ subGroups cellType=t1K562 treatment=NABUT rep=rep2\ track wgEncodeDukeAffyExonK562NabutSimpleSignalRep2\ type bigBed 6 +\ wgEncodeAwgSegmentationSegwayK562 K562 Segway bed 9 . K562 Genome Segmentation by Segway from ENCODE/Analysis 0 9 0 0 0 127 127 127 0 0 0 regulation 1 longLabel K562 Genome Segmentation by Segway from ENCODE/Analysis\ parent wgEncodeAwgSegmentation off\ shortLabel K562 Segway\ subGroups tier=t1 cellType=t1K562 method=Segway\ track wgEncodeAwgSegmentationSegwayK562\ type bed 9 .\ decodeMaleNonCarrier Male Non-carry bigWig 0.0 151.353 deCODE recombination map, male non-carrier 0 9 0 128 140 127 191 197 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 0 color 0,128,140\ configurable on\ longLabel deCODE recombination map, male non-carrier\ parent maleView\ priority 9\ shortLabel Male Non-carry\ subGroups view=male\ track decodeMaleNonCarrier\ type bigWig 0.0 151.353\ wgEncodeHaibMethyl450Mcf7SitesRep1 MCF-7 bed 9 MCF-7 Methylation 450K Bead Array from ENCODE/HAIB 1 9 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel MCF-7\ subGroups cellType=t2MCF7 obtainedBy=DUKE treatment=zNONE\ track wgEncodeHaibMethyl450Mcf7SitesRep1\ type bed 9\ wgEncodeAwgDnaseUwdukeMcf7UniPk MCF-7 DNase narrowPeak MCF-7 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 9 80 80 80 167 167 167 1 0 0 regulation 1 color 80,80,80\ longLabel MCF-7 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform on\ shortLabel MCF-7 DNase\ subGroups tier=a25 cellType=a25MCF-7\ track wgEncodeAwgDnaseUwdukeMcf7UniPk\ wgEncodeGisChiaPetMcf7CtcfInteractionsRep1 MCF7 CTCF Int 1 bed 12 MCF-7 CTCF ChIA-PET Interactions Rep 1 from ENCODE/GIS-Ruan 2 9 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 CTCF ChIA-PET Interactions Rep 1 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetInteractions off\ shortLabel MCF7 CTCF Int 1\ subGroups view=Interactions factor=CTCF cellType=t2MCF7 rep=rep1\ track wgEncodeGisChiaPetMcf7CtcfInteractionsRep1\ type bed 12\ MGI_Exome_Capture_V5 MGI Easy V5 T bigBed MGI - Easy Exome Capture V5 Target Regions 1 9 220 38 127 237 146 191 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/MGI_Exome_Capture_V5.bb\ color 220,38,127\ longLabel MGI - Easy Exome Capture V5 Target Regions\ parent exomeProbesets off\ shortLabel MGI Easy V5 T\ track MGI_Exome_Capture_V5\ type bigBed\ visibility dense\ wgEncodeCshlShortRnaSeqViewMinusSignal Minus Signal bed 3 Small RNA-seq from ENCODE/Cold Spring Harbor Lab 2 9 0 0 0 127 127 127 0 0 0 expression 1 autoScale off\ longLabel Small RNA-seq from ENCODE/Cold Spring Harbor Lab\ maxHeightPixels 100:24:16\ parent wgEncodeCshlShortRnaSeq\ shortLabel Minus Signal\ track wgEncodeCshlShortRnaSeqViewMinusSignal\ transformFunc NONE\ view MinusSignal\ viewLimits 0:30\ visibility full\ windowingFunction mean+whiskers\ vertebrateChainNetViewnet Nets bed 3 Non-placental Vertebrate Genomes, Chain and Net Alignments 1 9 0 0 0 255 255 0 0 0 0 compGeno 1 longLabel Non-placental Vertebrate Genomes, Chain and Net Alignments\ parent vertebrateChainNet\ shortLabel Nets\ track vertebrateChainNetViewnet\ view net\ visibility dense\ uMassBrainHistoneSignalS6NeuP4pt7yrsM NeuN+ 4.7yrs M bigWig UMMS Brain Histone H3K4me3 (NeuN+ D6) Gender-male Age-4.7 2 9 41 158 41 148 206 148 0 0 0 regulation 0 color 41,158,41\ longLabel UMMS Brain Histone H3K4me3 (NeuN+ D6) Gender-male Age-4.7\ parent uMassBrainHistoneViewSignal\ shortLabel NeuN+ 4.7yrs M\ subGroups view=Signal donor=g_6 cellType=norm sex=male age=b_young\ track uMassBrainHistoneSignalS6NeuP4pt7yrsM\ type bigWig\ wgEncodeRegTxnCaltechRnaSeqNhlfR2x75Il200SigPooled NHLF bigWig 0 65535 Transcription of NHLF cells from ENCODE 0 9 255 128 212 255 191 233 0 0 0 regulation 1 color 255,128,212\ longLabel Transcription of NHLF cells from ENCODE\ parent wgEncodeRegTxn\ priority 9\ shortLabel NHLF\ track wgEncodeRegTxnCaltechRnaSeqNhlfR2x75Il200SigPooled\ type bigWig 0 65535\ wgEncodeBroadHmmNhlfHMM NHLF ChromHMM bed 9 . NHLF Chromatin State Segmentation by HMM from ENCODE/Broad 0 9 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHLF Chromatin State Segmentation by HMM from ENCODE/Broad\ origAssembly hg18\ parent wgEncodeBroadHmm\ shortLabel NHLF ChromHMM\ subGroups cellType=t3NHLF\ track wgEncodeBroadHmmNhlfHMM\ type bed 9 .\ iscaPathGainCum Path Gain bedGraph 4 ClinGen CNVs: Pathogenic Gain Coverage 2 9 0 0 200 127 127 227 0 0 0 phenDis 0 color 0,0,200\ longLabel ClinGen CNVs: Pathogenic Gain Coverage\ parent iscaViewTotal\ shortLabel Path Gain\ subGroups view=cov class=path level=sub\ track iscaPathGainCum\ wgEncodeCshlShortRnaSeqViewPlusSignal Plus Signal bed 3 Small RNA-seq from ENCODE/Cold Spring Harbor Lab 2 9 0 0 0 127 127 127 0 0 0 expression 1 autoScale off\ longLabel Small RNA-seq from ENCODE/Cold Spring Harbor Lab\ maxHeightPixels 100:24:16\ parent wgEncodeCshlShortRnaSeq\ shortLabel Plus Signal\ track wgEncodeCshlShortRnaSeqViewPlusSignal\ transformFunc NONE\ view PlusSignal\ viewLimits 0:30\ visibility full\ windowingFunction mean+whiskers\ polyA Poly(A) bed 3 . Poly(A) Sites, Both Reported and Predicted 0 9 0 0 0 127 127 127 0 0 0

Description

\

\ The polyA_DB database is a set of human mRNA polyadenlyation sites based\ on EST/cDNA evidence. \ A site is a single base denoting the beginning of a poly(A) tail in a nascent\ mRNA transcript and is typically 10-30 nucleotides downstream of a \ polyadenylation signal (most commonly AAUAAA).\ The polyA_DB web server is found at \ http://exon.umdnj.edu/polya_db/.\

\

\ The Poly(A) composite track consists of two subtracks: a polyA_DB \ subtrack that displays reported poly(A) sites, and a poly(A) \ prediction subtrack that displays poly(A) sites predicted using a\ support vector machine (SVM). \

\

\ The poly(A) predictions are made using 1500-base DNA sequences centered at \ the end of each RefSeq gene. The sequences serve as input into the \ SVM described in Cheng et al., 2006. The SVM scores \ each base\ using a model derived from 15 different cis-elements and reports an E-value for\ a region of DNA between 0 (excellent) and 0.5 (worst). This E-value is then\ normalized to an integer value between 0 (worst) and 1000 (excellent). \ High-scoring \ regions are highlighted, with the highest-scoring base indicated by a thicker \ line. The median length of these regions is 48 bases.\

\ \

References

\

\ Cheng Y, Miura RM, Tian B.\ \ Prediction of mRNA polyadenylation sites by support vector machine.\ Bioinformatics. 2006 Oct 1;22(19):2320-5.\ PMID: 16870936\

\ \

\ Zhang H, Hu J, Recce M, Tian B.\ \ PolyA_DB: a database for mammalian mRNA polyadenylation.\ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D116-20.\ PMID: 15608159; PMC: PMC540009\

\ rna 1 compositeTrack on\ configureByPopup off\ group rna\ longLabel Poly(A) Sites, Both Reported and Predicted\ noInherit on\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ priority 9\ shortLabel Poly(A)\ track polyA\ type bed 3 .\ visibility hide\ polyASeqSitesMaqcBrain2Fwd PolyA-Seq MaqcBrain2 bigWig 0.260000 61466.800781 Poly(A)-tail sequencing of MAQC Brain (replicate 2) from Merck (Fwd strand) 2 9 153 51 51 204 153 153 0 0 0 rna 0 color 153,51,51\ longLabel Poly(A)-tail sequencing of MAQC Brain (replicate 2) from Merck (Fwd strand)\ parent polyASeqSitesSignalView\ shortLabel PolyA-Seq MaqcBrain2\ subGroups view=Signal tissType=MaqcBrain2 strand=fwd\ track polyASeqSitesMaqcBrain2Fwd\ type bigWig 0.260000 61466.800781\ prsT2Diabetes PRS-E T2 Diabetes bigBed 8 + Polygenic Risk Scores eMERGE: T2 Diabetes 1 9 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg19/prsEmerge/t2d.bb\ longLabel Polygenic Risk Scores eMERGE: T2 Diabetes\ parent prsEmerge pack\ shortLabel PRS-E T2 Diabetes\ track prsT2Diabetes\ type bigBed 8 +\ ncbiRefSeqHgmd RefSeq HGMD genePred NCBI RefSeq HGMD subset: transcripts with clinical variants in HGMD 1 9 20 20 160 137 137 207 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 20,20,160\ idXref ncbiRefSeqLink mrnaAcc name\ longLabel NCBI RefSeq HGMD subset: transcripts with clinical variants in HGMD\ parent refSeqComposite off\ priority 9\ shortLabel RefSeq HGMD\ track ncbiRefSeqHgmd\ trackHandler ncbiRefSeq\ type genePred\ burgeRnaSeqGemMapperAlignColon RNA-seq Colon bed 12 Burge Lab RNA-seq 32mer Reads from Colon 1 9 12 12 120 133 133 187 0 0 0 expression 1 longLabel Burge Lab RNA-seq 32mer Reads from Colon\ parent burgeRnaSeqGemMapperAlignViewAlignments off\ shortLabel RNA-seq Colon\ subGroups view=Alignments tissueType=colon\ track burgeRnaSeqGemMapperAlignColon\ gnomadGenomes100XPercentage Sample % > 100X bigWig 0 1 gnomAD Percentage of Genome Samples with at least 100X Coverage 0 9 15 0 240 135 127 247 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.genomes.coverage.depth100.bw\ color 15,0,240\ longLabel gnomAD Percentage of Genome Samples with at least 100X Coverage\ parent gnomadGenomesReadDepthPct off\ priority 9\ shortLabel Sample % > 100X\ subGroups view=gRDepth\ track gnomadGenomes100XPercentage\ gnomadExomes100XPercentage Sample % > 100X bigWig 0 1 gnomAD Percentage of Exome Samples with at least 100X Coverage 0 9 15 0 240 135 127 247 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.exomes.coverage.depth100.bw\ color 15,0,240\ longLabel gnomAD Percentage of Exome Samples with at least 100X Coverage\ parent gnomadExomesReadDepthPct off\ priority 9\ shortLabel Sample % > 100X\ subGroups view=eRDepth\ track gnomadExomes100XPercentage\ dhcVcfHGDP01029 San Variants vcfTabix San Individual (HGDP01029) Variant Calls 0 9 0 0 0 127 127 127 0 0 0 denisova 1 longLabel San Individual (HGDP01029) Variant Calls\ parent dhcVcfModern\ priority 9\ shortLabel San Variants\ track dhcVcfHGDP01029\ vcfDoMaf off\ pgTk1 TK1 pgSnp TK1 Genome Variants (all SNPs, 16x exome) 3 9 0 0 0 127 127 127 0 0 0 varRep 1 longLabel TK1 Genome Variants (all SNPs, 16x exome)\ origAssembly hg18\ parent pgSnpPSU\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel TK1\ subGroups view=A_PSU id=AD_TK1 type=SNP\ track pgTk1\ vertebrateChainNet Vertebrate Chain/Net bed 3 Non-placental Vertebrate Genomes, Chain and Net Alignments 0 9 0 0 0 255 255 0 0 0 0

Description

\

Chain Track

\

\ The chain track shows alignments of human (Feb. 2009 (GRCh37/hg19)) to\ other genomes using a gap scoring system that allows longer gaps \ than traditional affine gap scoring systems. It can also tolerate gaps in both\ human and the other genome simultaneously. These \ "double-sided" gaps can be caused by local inversions and \ overlapping deletions in both species. \

\ The chain track displays boxes joined together by either single or\ double lines. The boxes represent aligning regions.\ Single lines indicate gaps that are largely due to a deletion in the\ other assembly or an insertion in the human assembly.\ Double lines represent more complex gaps that involve substantial\ sequence in both species. This may result from inversions, overlapping\ deletions, an abundance of local mutation, or an unsequenced gap in one\ species. In cases where multiple chains align over a particular region of\ the other genome, the chains with single-lined gaps are often \ due to processed pseudogenes, while chains with double-lined gaps are more \ often due to paralogs and unprocessed pseudogenes.

\

\ In the "pack" and "full" display\ modes, the individual feature names indicate the chromosome, strand, and\ location (in thousands) of the match for each matching alignment.

\ \

Net Track

\

\ The net track shows the best human/other chain for \ every part of the other genome. It is useful for\ finding orthologous regions and for studying genome\ rearrangement. The human sequence used in this annotation is from\ the Feb. 2009 (GRCh37/hg19) assembly.

\ \

Display Conventions and Configuration

\

Chain Track

\

By default, the chains to chromosome-based assemblies are colored\ based on which chromosome they map to in the aligning organism. To turn\ off the coloring, check the "off" button next to: Color\ track based on chromosome.

\

\ To display only the chains of one chromosome in the aligning\ organism, enter the name of that chromosome (e.g. chr4) in box next to: \ Filter by chromosome.

\ \

Net Track

\

\ In full display mode, the top-level (level 1)\ chains are the largest, highest-scoring chains that\ span this region. In many cases gaps exist in the\ top-level chain. When possible, these are filled in by\ other chains that are displayed at level 2. The gaps in \ level 2 chains may be filled by level 3 chains and so\ forth.

\

\ In the graphical display, the boxes represent ungapped \ alignments; the lines represent gaps. Click\ on a box to view detailed information about the chain\ as a whole; click on a line to display information\ about the gap. The detailed information is useful in determining\ the cause of the gap or, for lower level chains, the genomic\ rearrangement.

\

\ Individual items in the display are categorized as one of four types\ (other than gap):

\

    \
  • Top - the best, longest match. Displayed on level 1.\
  • Syn - line-ups on the same chromosome as the gap in the level above\ it.\
  • Inv - a line-up on the same chromosome as the gap above it, but in \ the opposite orientation.\
  • NonSyn - a match to a chromosome different from the gap in the \ level above.\

\ \

Methods

\

Chain track

\

\ Transposons that have been inserted since the human/other\ split were removed from the assemblies. The abbreviated genomes were\ aligned with lastz, and the transposons were added back in.\ The resulting alignments were converted into axt format using the lavToAxt\ program. The axt alignments were fed into axtChain, which organizes all\ alignments between a single human chromosome and a single\ chromosome from the other genome into a group and creates a kd-tree out\ of the gapless subsections (blocks) of the alignments. A dynamic program\ was then run over the kd-trees to find the maximally scoring chains of these\ blocks.\ \

\
\

\

\ The following lastz matrix was used
for the alignments to: Wallaby, Tasmanian Devil\

\ \ \ \ \ \ \ \
 ACGT
A91-114-31-123
C-114100-125-31
G-31-125100-114
T-123-31-11491
\ \ 		 \

\

\ The following lastz matrix was used
for the alignments to: American Alligator, Medium Ground Finch,
\ Opossum, Platypus, Chicken, Zebra Finch, Lizard, X. tropicalis,
\ Stickleback, Fugu, Zebrafish, Tetraodon, Medaka, Lamprey\

\ \ \ \ \ \ \
 ACGT
A91-90-25-100
C-90100-100-25
G-25-100100-90
T-100-25-9091
\

\ \ For the Wallaby alignment, chains scoring below a minimum score\ of '3000' were discarded; the remaining chains are displayed in this track.\ The linear gap matrix used with axtChain:
\ \ 
-linearGap=medium\
\
tableSize    11\
smallSize   111\
position  1   2   3   11  111  2111  12111  32111   72111  152111  252111\
qGap    350 425 450  600  900  2900  22900  57900  117900  217900  317900\
tGap    350 425 450  600  900  2900  22900  57900  117900  217900  317900\
bothGap 750 825 850 1000 1300  3300  23300  58300  118300  218300  318300\
\ \ For the alignments to: American Alligator, Medium Ground Finch, Tasmanian Devil, Opossum, Platypus, Chicken,\ Zebra Finch, Lizard, X. tropicalis, Stickleback, Fugu, Zebrafish, Tetraodon,\ Medaka and Lamprey, chains scoring below a minimum score\ of '5000' were discarded; the remaining chains are displayed\ in this track. The linear gap matrix used with axtChain:
\ \ 
-linearGap=loose\
\
tablesize    11\
smallSize   111\
position  1   2   3   11  111  2111  12111  32111  72111  152111  252111\
qGap    325 360 400  450  600  1100   3600   7600  15600   31600   56600\
tGap    325 360 400  450  600  1100   3600   7600  15600   31600   56600\
bothGap 625 660 700  750  900  1400   4000   8000  16000   32000   57000\
\ \ See also: lastz parameters used in these alignments,\ and chain minimum score and gap parameters used in these alignments.\

\ \

Net track

\

\ Chains were derived from lastz alignments, using the methods\ described on the chain tracks description pages, and sorted with the \ highest-scoring chains in the genome ranked first. The program\ chainNet was then used to place the chains one at a time, trimming them as \ necessary to fit into sections not already covered by a higher-scoring chain. \ During this process, a natural hierarchy emerged in which a chain that filled \ a gap in a higher-scoring chain was placed underneath that chain. The program \ netSyntenic was used to fill in information about the relationship between \ higher- and lower-level chains, such as whether a lower-level\ chain was syntenic or inverted relative to the higher-level chain. \ The program netClass was then used to fill in how much of the gaps and chains \ contained Ns (sequencing gaps) in one or both species and how much\ was filled with transposons inserted before and after the two organisms \ diverged.

\ \

Credits

\

\ Lastz (previously known as blastz) was developed at\ Pennsylvania State University by \ Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from\ Ross Hardison.

\

\ Lineage-specific repeats were identified by Arian Smit and his \ RepeatMasker\ program.

\

\ The axtChain program was developed at the University of California at \ Santa Cruz by Jim Kent with advice from Webb Miller and David Haussler.

\

\ The browser display and database storage of the chains and nets were created\ by Robert Baertsch and Jim Kent.

\

\ The chainNet, netSyntenic, and netClass programs were\ developed at the University of California\ Santa Cruz by Jim Kent.

\

\ \

References

\

\ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput. 2002:115-26.\ PMID: 11928468\

\ \

\ Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\ Evolution's cauldron:\ duplication, deletion, and rearrangement in the mouse and human genomes.\ Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\ PMID: 14500911; PMC: PMC208784\

\ \

\ Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC,\ Haussler D, Miller W.\ Human-mouse alignments with BLASTZ.\ Genome Res. 2003 Jan;13(1):103-7.\ PMID: 12529312; PMC: PMC430961\

\ compGeno 1 altColor 255,255,0\ chainLinearGap loose\ chainMinScore 5000\ color 0,0,0\ compositeTrack on\ configurable on\ dimensions dimensionX=clade dimensionY=species\ dragAndDrop subTracks\ group compGeno\ html vertebrateChainNet\ longLabel Non-placental Vertebrate Genomes, Chain and Net Alignments\ noInherit on\ priority 9\ shortLabel Vertebrate Chain/Net\ sortOrder species=+ view=+ clade=+\ subGroup1 view Views chain=Chains net=Nets\ subGroup2 species Species s000=Wallaby s001=Wallaby s002=Tasmanian_devil s003=Opossum s004a=Platypus s004b=Platypus s005=Platypus s006=Turkey s007a=Turkey s007b=Japanese_quail s008a=Chicken s008b=Chicken s009=Chicken s010=Chicken s011=Mallard_duck s012=Scarlet_macaw s013=Medium_ground_finch s014=White-throated_sparrow s015=Collared_flycatcher s016=Golden_eagle s017=Peregrine_falcon s018=Saker_falcon s019=Rock_pigeon s020=Parrot s021=Budgerigar s022=Tibetan_ground_jay s023=Zebra_finch s024=Zebra_finch s025=American_alligator s026=Chinese_alligator s027=Lizard s028=Lizard s028b=Garter_snake s029a=Axolotl s029b=X._tropicalis s029c=X._tropicalis s030=X._tropicalis s031=X._tropicalis s032=X._tropicalis s033=X._tropicalis s034=African_clawed_frog s035=Spiny_softshell_turtle s036=Chinese_softshell_turtle s037=Painted_turtle s038=Painted_turtle s039=Green_seaturtle s040=Coelacanth s041=Spotted_gar s042=Mexican_tetra_(cavefish) s043=Zebrafish s044=Zebrafish s045=Zebrafish s046=Zebrafish s047=Zebrafish s048=Atlantic_cod s049=Stickleback s050=Southern_platyfish s051=Medaka s052=Pundamilia_nyererei s053=Zebra_mbuna s054=Princess_of_Burundi s055=Burton's_mouthbreeder s056=Nile_tilapia s057=Nile_tilapia s058=Nile_tilapia s059=Yellowbelly_pufferfish s060=Fugu s061=Fugu s062=Tetraodon s063=Tetraodon s064a=Lamprey s064b=Lamprey s065=Lamprey s066=Arctic_lamprey\ subGroup3 clade Clade c00=mammalia c01=dinosauria c02=lepidosauria c03=amphibia c04=cryptodira c05=coelancanthimorpha c06=neopterygii c07=hyperoartia\ track vertebrateChainNet\ type bed 3\ visibility hide\ mtrScores MTR Scores bigWig MTR - Missense Tolerance Ratio Scores by base 2 9.2 124 39 175 189 147 215 0 0 0

Description

\ \

\ The "Constraint scores" container track includes several subtracks showing the results of\ constraint prediction algorithms. These try to find regions of negative\ selection, where variations likely have functional impact. The algorithms do\ not use multi-species alignments to derive evolutionary constraint, but use\ primarily human variation, usually from variants collected by gnomAD (see the\ gnomAD V2 or V3 tracks on hg19 and hg38) or TOPMED (contained in our dbSNP\ tracks and available as a filter). One of the subtracks is based on UK Biobank\ variants, which are not available publicly, so we have no track with the raw data.\ The number of human genomes that are used as the input for these scores are\ 76k, 53k and 110k for gnomAD, TOPMED and UK Biobank, respectively.\

\ \

Note that another important constraint score, gnomAD\ constraint, is not part of this container track but can be found in the hg38 gnomAD\ track.\

\ \ The algorithms included in this track are:\
    \
  1. \ JARVIS - "Junk" Annotation genome-wide Residual Variation Intolerance Score: \ JARVIS scores were created by first scanning the entire genome with a\ sliding-window approach (using a 1-nucleotide step), recording the number of\ all TOPMED variants and common variants, irrespective of their predicted effect,\ within each window, to eventually calculate a single-nucleotide resolution\ genome-wide residual variation intolerance score (gwRVIS). That score, gwRVIS\ was then combined with primary genomic sequence context, and additional genomic\ annotations with a multi-module deep learning framework to infer\ pathogenicity of noncoding regions that still remains naive to existing\ phylogenetic conservation metrics. The higher the score, the more deleterious\ the prediction. This score covers the entire genome, except the gaps.\ \
  2. \ HMC - Homologous Missense Constraint:\ Homologous Missense Constraint (HMC) is a amino acid level measure\ of genetic intolerance of missense variants within human populations.\ For all assessable amino-acid positions in Pfam domains, the number of\ missense substitutions directly observed in gnomAD (Observed) was counted\ and compared to the expected value under a neutral evolution\ model (Expected). The upper limit of a 95% confidence interval for the\ Observed/Expected ratio is defined as the HMC score. Missense variants\ disrupting the amino-acid positions with HMC<0.8 are predicted to be\ likely deleterious. This score only covers PFAM domains within coding regions.\ \
  3. \ MetaDome - Tolerance Landscape Score (hg19 only):\ MetaDome Tolerance Landscape scores are computed as a missense over synonymous \ variant count ratio, which is calculated in a sliding window (with a size of 21 \ codons/residues) to provide \ a per-position indication of regional tolerance to missense variation. The \ variant database was gnomAD and the score corrected for codon composition. Scores \ <0.7 are considered intolerant. This score covers only coding regions.\ \
  4. \ MTR - Missense Tolerance Ratio (hg19 only):\ Missense Tolerance Ratio (MTR) scores aim to quantify the amount of purifying \ selection acting specifically on missense variants in a given window of \ protein-coding sequence. It is estimated across sliding windows of 31 codons \ (default) and uses observed standing variation data from the WES component of \ gnomAD / the Exome Aggregation Consortium Database (ExAC), version 2.0. Scores\ were computed using Ensembl v95 release. The number of gnomAD 2 exomes used here\ is higher than the number of gnomAD 3 samples (125 exoms versus 76k full genomes), \ but this score only covers coding regions.\ \
  5. \ UK Biobank depletion rank score (hg38 only):\ Halldorsson et al. tabulated the number of UK Biobank variants in each\ 500bp window of the genome and compared this number to an expected number\ given the heptamer nucleotide composition of the window and the fraction of\ heptamers with a sequence variant across the genome and their mutational\ classes. A variant depletion score was computed for every overlapping set\ of 500-bp windows in the genome with a 50-bp step size. They then assigned\ a rank (depletion rank (DR)) from 0 (most depletion) to 100 (least\ depletion) for each 500-bp window. Since the windows are overlapping, we\ plot the value only in the central 50bp of the 500bp window, following\ advice from the author of the score,\ Hakon Jonsson, deCODE Genetics. He suggested that the value of the central\ window, rather than the worst possible score of all overlapping windows, is\ the most informative for a position. This score covers almost the entire genome,\ only very few regions were excluded, where the genome sequence had too many gap characters.
\ \

Display Conventions and Configuration

\ \

JARVIS

\

\ JARVIS scores are shown as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The scores were downloaded and converted to a single bigWig file.\ Move the mouse over the bars to display the exact values. A horizontal line is shown at the 0.733\ value which signifies the 90th percentile.

\ See hg19 makeDoc and\ hg38 makeDoc.

\

\ Interpretation: The authors offer a suggested guideline of > 0.9998 for identifying\ higher confidence calls and minimizing false positives. In addition to that strict threshold, the \ following two more relaxed cutoffs can be used to explore additional hits. Note that these\ thresholds are offered as guidelines and are not necessarily representative of pathogenicity.

\ \

\ \ \ \ \ \ \ \ \ \
PercentileJARVIS score threshold
99th0.9998
95th0.9826
90th0.7338
\

\ \

HMC

\

\ HMC scores are displayed as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The highly-constrained cutoff\ of 0.8 is indicated with a line.

\

\ Interpretation: \ A protein residue with HMC score <1 indicates that missense variants affecting\ the homologous residues are significantly under negative selection (P-value <\ 0.05) and likely to be deleterious. A more stringent score threshold of HMC<0.8\ is recommended to prioritize predicted disease-associated variants.\

\ \

MetaDome

\

\ MetaDome data can be found on two tracks, MetaDome and MetaDome All Data.\ The MetaDome track should be used by default for data exploration. In this track\ the raw data containing the MetaDome tolerance scores were converted into a signal ("wiggle")\ track. Since this data was computed on the proteome, there was a small amount of coordinate\ overlap, roughly 0.42%. In these regions the lowest possible score was chosen for display\ in the track to maintain sensitivity. For this reason, if a protein variant is being evaluated,\ the MetaDome All Data track can be used to validate the score. More information\ on this data can be found in the MetaDome FAQ.

\

\ Interpretation: The authors suggest the following guidelines for evaluating\ intolerance. By default, the MetaDome track displays a horizontal line at 0.7 which \ signifies the first intolerant bin. For more information see the MetaDome publication.

\ \

\ \ \ \ \ \ \ \ \ \
ClassificationMetaDome Tolerance Score
Highly intolerant≤ 0.175
Intolerant≤ 0.525
Slightly intolerant≤ 0.7
\

\ \

MTR

\

\ MTR data can be found on two tracks, MTR All data and MTR Scores. In the\ MTR Scores track the data has been converted into 4 separate signal tracks\ representing each base pair mutation, with the lowest possible score shown when\ multiple transcripts overlap at a position. Overlaps can happen since this score\ is derived from transcripts and multiple transcripts can overlap. \ A horizontal line is drawn on the 0.8 score line\ to roughly represent the 25th percentile, meaning the items below may be of particular\ interest. It is recommended that the data be explored using\ this version of the track, as it condenses the information substantially while\ retaining the magnitude of the data.

\ \

Any specific point mutations of interest can then be researched in the \ MTR All data track. This track contains all of the information from\ \ MTRV2 including more than 3 possible scores per base when transcripts overlap.\ A mouse-over on this track shows the ref and alt allele, as well as the MTR score\ and the MTR score percentile. Filters are available for MTR score, False Discovery Rate\ (FDR), MTR percentile, and variant consequence. By default, only items in the bottom\ 25 percentile are shown. Items in the track are colored according\ to their MTR percentile:

\
    \
  • Green items MTR percentiles over 75\
  • Black items MTR percentiles between 25 and 75\
  • Red items MTR percentiles below 25\
  • Blue items No MTR score\
\

\ Interpretation: Regions with low MTR scores were seen to be enriched with\ pathogenic variants. For example, ClinVar pathogenic variants were seen to\ have an average score of 0.77 whereas ClinVar benign variants had an average score\ of 0.92. Further validation using the FATHMM cancer-associated training dataset saw\ that scores less than 0.5 contained 8.6% of the pathogenic variants while only containing\ 0.9% of neutral variants. In summary, lower scores are more likely to represent\ pathogenic variants whereas higher scores could be pathogenic, but have a higher chance\ to be a false positive. For more information see the MTR-Viewer publication.

\ \

Methods

\ \

JARVIS

\

\ Scores were downloaded and converted to a single bigWig file. See the\ hg19 makeDoc and the\ hg38 makeDoc for more info.\

\ \

HMC

\

\ Scores were downloaded and converted to .bedGraph files with a custom Python \ script. The bedGraph files were then converted to bigWig files, as documented in our \ makeDoc hg19 build log.

\ \

MetaDome

\

\ The authors provided a bed file containing codon coordinates along with the scores. \ This file was parsed with a python script to create the two tracks. For the first track\ the scores were aggregated for each coordinate, then the lowest score chosen for any\ overlaps and the result written out to bedGraph format. The file was then converted\ to bigWig with the bedGraphToBigWig utility. For the second track the file\ was reorganized into a bed 4+3 and conveted to bigBed with the bedToBigBed\ utility.

\

\ See the hg19 makeDoc for details including the build script.

\

\ The raw MetaDome data can also be accessed via their Zenodo handle.

\ \

MTR

\

\ V2\ file was downloaded and columns were reshuffled as well as itemRgb added for the\ MTR All data track. For the MTR Scores track the file was parsed with a python\ script to pull out the highest possible MTR score for each of the 3 possible mutations\ at each base pair and 4 tracks built out of these values representing each mutation.

\

\ See the hg19 makeDoc entry on MTR for more info.

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

\ \

\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

\ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/hmc/hmc.bw stdout\
\

\ \

\ Please refer to our\ Data Access FAQ\ for more information.\

\ \ \

Credits

\ \

\ Thanks to Jean-Madeleine Desainteagathe (APHP Paris, France) for suggesting the JARVIS, MTR, HMC tracks. Thanks to Xialei Zhang for providing the HMC data file and to Dimitrios Vitsios and Slave Petrovski for helping clean up the hg38 JARVIS files for providing guidance on interpretation. Additional\ thanks to Laurens van de Wiel for providing the MetaDome data as well as guidance on the track development and interpretation. \

\ \

References

\ \

\ Vitsios D, Dhindsa RS, Middleton L, Gussow AB, Petrovski S.\ \ Prioritizing non-coding regions based on human genomic constraint and sequence context with deep\ learning.\ Nat Commun. 2021 Mar 8;12(1):1504.\ PMID: 33686085; PMC: PMC7940646\

\ \

\ Xiaolei Zhang, Pantazis I. Theotokis, Nicholas Li, the SHaRe Investigators, Caroline F. Wright, Kaitlin E. Samocha, Nicola Whiffin, James S. Ware\ \ Genetic constraint at single amino acid resolution improves missense variant prioritisation and gene discovery.\ Medrxiv 2022.02.16.22271023\

\ \

\ Wiel L, Baakman C, Gilissen D, Veltman JA, Vriend G, Gilissen C.\ \ MetaDome: Pathogenicity analysis of genetic variants through aggregation of homologous human protein\ domains.\ Hum Mutat. 2019 Aug;40(8):1030-1038.\ PMID: 31116477; PMC: PMC6772141\

\ \

\ Silk M, Petrovski S, Ascher DB.\ \ MTR-Viewer: identifying regions within genes under purifying selection.\ Nucleic Acids Res. 2019 Jul 2;47(W1):W121-W126.\ PMID: 31170280; PMC: PMC6602522\

\ \

\ Halldorsson BV, Eggertsson HP, Moore KHS, Hauswedell H, Eiriksson O, Ulfarsson MO, Palsson G,\ Hardarson MT, Oddsson A, Jensson BO et al.\ \ The sequences of 150,119 genomes in the UK Biobank.\ Nature. 2022 Jul;607(7920):732-740.\ PMID: 35859178; PMC: PMC9329122\

\ \ phenDis 0 autoScale group\ color 124,39,175\ compositeTrack on\ group phenDis\ html constraintSuper\ longLabel MTR - Missense Tolerance Ratio Scores by base\ maxWindowToDraw 10000000\ maxWindowToQuery 500000\ mouseOverFunction noAverage\ parent constraintSuper\ priority 9.2\ shortLabel MTR Scores\ track mtrScores\ type bigWig\ viewLimits 0:1.1\ viewLimitsMax 0:1.56\ visibility full\ yLineMark 0.8\ yLineOnOff on\ mtrBed MTR All Data bigBed 9 + 10 MTR - Missense Tolerance Ratio Scores all annotations 0 9.5 0 0 0 127 127 127 0 0 0

Description

\ \

\ The "Constraint scores" container track includes several subtracks showing the results of\ constraint prediction algorithms. These try to find regions of negative\ selection, where variations likely have functional impact. The algorithms do\ not use multi-species alignments to derive evolutionary constraint, but use\ primarily human variation, usually from variants collected by gnomAD (see the\ gnomAD V2 or V3 tracks on hg19 and hg38) or TOPMED (contained in our dbSNP\ tracks and available as a filter). One of the subtracks is based on UK Biobank\ variants, which are not available publicly, so we have no track with the raw data.\ The number of human genomes that are used as the input for these scores are\ 76k, 53k and 110k for gnomAD, TOPMED and UK Biobank, respectively.\

\ \

Note that another important constraint score, gnomAD\ constraint, is not part of this container track but can be found in the hg38 gnomAD\ track.\

\ \ The algorithms included in this track are:\
    \
  1. \ JARVIS - "Junk" Annotation genome-wide Residual Variation Intolerance Score: \ JARVIS scores were created by first scanning the entire genome with a\ sliding-window approach (using a 1-nucleotide step), recording the number of\ all TOPMED variants and common variants, irrespective of their predicted effect,\ within each window, to eventually calculate a single-nucleotide resolution\ genome-wide residual variation intolerance score (gwRVIS). That score, gwRVIS\ was then combined with primary genomic sequence context, and additional genomic\ annotations with a multi-module deep learning framework to infer\ pathogenicity of noncoding regions that still remains naive to existing\ phylogenetic conservation metrics. The higher the score, the more deleterious\ the prediction. This score covers the entire genome, except the gaps.\ \
  2. \ HMC - Homologous Missense Constraint:\ Homologous Missense Constraint (HMC) is a amino acid level measure\ of genetic intolerance of missense variants within human populations.\ For all assessable amino-acid positions in Pfam domains, the number of\ missense substitutions directly observed in gnomAD (Observed) was counted\ and compared to the expected value under a neutral evolution\ model (Expected). The upper limit of a 95% confidence interval for the\ Observed/Expected ratio is defined as the HMC score. Missense variants\ disrupting the amino-acid positions with HMC<0.8 are predicted to be\ likely deleterious. This score only covers PFAM domains within coding regions.\ \
  3. \ MetaDome - Tolerance Landscape Score (hg19 only):\ MetaDome Tolerance Landscape scores are computed as a missense over synonymous \ variant count ratio, which is calculated in a sliding window (with a size of 21 \ codons/residues) to provide \ a per-position indication of regional tolerance to missense variation. The \ variant database was gnomAD and the score corrected for codon composition. Scores \ <0.7 are considered intolerant. This score covers only coding regions.\ \
  4. \ MTR - Missense Tolerance Ratio (hg19 only):\ Missense Tolerance Ratio (MTR) scores aim to quantify the amount of purifying \ selection acting specifically on missense variants in a given window of \ protein-coding sequence. It is estimated across sliding windows of 31 codons \ (default) and uses observed standing variation data from the WES component of \ gnomAD / the Exome Aggregation Consortium Database (ExAC), version 2.0. Scores\ were computed using Ensembl v95 release. The number of gnomAD 2 exomes used here\ is higher than the number of gnomAD 3 samples (125 exoms versus 76k full genomes), \ but this score only covers coding regions.\ \
  5. \ UK Biobank depletion rank score (hg38 only):\ Halldorsson et al. tabulated the number of UK Biobank variants in each\ 500bp window of the genome and compared this number to an expected number\ given the heptamer nucleotide composition of the window and the fraction of\ heptamers with a sequence variant across the genome and their mutational\ classes. A variant depletion score was computed for every overlapping set\ of 500-bp windows in the genome with a 50-bp step size. They then assigned\ a rank (depletion rank (DR)) from 0 (most depletion) to 100 (least\ depletion) for each 500-bp window. Since the windows are overlapping, we\ plot the value only in the central 50bp of the 500bp window, following\ advice from the author of the score,\ Hakon Jonsson, deCODE Genetics. He suggested that the value of the central\ window, rather than the worst possible score of all overlapping windows, is\ the most informative for a position. This score covers almost the entire genome,\ only very few regions were excluded, where the genome sequence had too many gap characters.
\ \

Display Conventions and Configuration

\ \

JARVIS

\

\ JARVIS scores are shown as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The scores were downloaded and converted to a single bigWig file.\ Move the mouse over the bars to display the exact values. A horizontal line is shown at the 0.733\ value which signifies the 90th percentile.

\ See hg19 makeDoc and\ hg38 makeDoc.

\

\ Interpretation: The authors offer a suggested guideline of > 0.9998 for identifying\ higher confidence calls and minimizing false positives. In addition to that strict threshold, the \ following two more relaxed cutoffs can be used to explore additional hits. Note that these\ thresholds are offered as guidelines and are not necessarily representative of pathogenicity.

\ \

\ \ \ \ \ \ \ \ \ \
PercentileJARVIS score threshold
99th0.9998
95th0.9826
90th0.7338
\

\ \

HMC

\

\ HMC scores are displayed as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The highly-constrained cutoff\ of 0.8 is indicated with a line.

\

\ Interpretation: \ A protein residue with HMC score <1 indicates that missense variants affecting\ the homologous residues are significantly under negative selection (P-value <\ 0.05) and likely to be deleterious. A more stringent score threshold of HMC<0.8\ is recommended to prioritize predicted disease-associated variants.\

\ \

MetaDome

\

\ MetaDome data can be found on two tracks, MetaDome and MetaDome All Data.\ The MetaDome track should be used by default for data exploration. In this track\ the raw data containing the MetaDome tolerance scores were converted into a signal ("wiggle")\ track. Since this data was computed on the proteome, there was a small amount of coordinate\ overlap, roughly 0.42%. In these regions the lowest possible score was chosen for display\ in the track to maintain sensitivity. For this reason, if a protein variant is being evaluated,\ the MetaDome All Data track can be used to validate the score. More information\ on this data can be found in the MetaDome FAQ.

\

\ Interpretation: The authors suggest the following guidelines for evaluating\ intolerance. By default, the MetaDome track displays a horizontal line at 0.7 which \ signifies the first intolerant bin. For more information see the MetaDome publication.

\ \

\ \ \ \ \ \ \ \ \ \
ClassificationMetaDome Tolerance Score
Highly intolerant≤ 0.175
Intolerant≤ 0.525
Slightly intolerant≤ 0.7
\

\ \

MTR

\

\ MTR data can be found on two tracks, MTR All data and MTR Scores. In the\ MTR Scores track the data has been converted into 4 separate signal tracks\ representing each base pair mutation, with the lowest possible score shown when\ multiple transcripts overlap at a position. Overlaps can happen since this score\ is derived from transcripts and multiple transcripts can overlap. \ A horizontal line is drawn on the 0.8 score line\ to roughly represent the 25th percentile, meaning the items below may be of particular\ interest. It is recommended that the data be explored using\ this version of the track, as it condenses the information substantially while\ retaining the magnitude of the data.

\ \

Any specific point mutations of interest can then be researched in the \ MTR All data track. This track contains all of the information from\ \ MTRV2 including more than 3 possible scores per base when transcripts overlap.\ A mouse-over on this track shows the ref and alt allele, as well as the MTR score\ and the MTR score percentile. Filters are available for MTR score, False Discovery Rate\ (FDR), MTR percentile, and variant consequence. By default, only items in the bottom\ 25 percentile are shown. Items in the track are colored according\ to their MTR percentile:

\
    \
  • Green items MTR percentiles over 75\
  • Black items MTR percentiles between 25 and 75\
  • Red items MTR percentiles below 25\
  • Blue items No MTR score\
\

\ Interpretation: Regions with low MTR scores were seen to be enriched with\ pathogenic variants. For example, ClinVar pathogenic variants were seen to\ have an average score of 0.77 whereas ClinVar benign variants had an average score\ of 0.92. Further validation using the FATHMM cancer-associated training dataset saw\ that scores less than 0.5 contained 8.6% of the pathogenic variants while only containing\ 0.9% of neutral variants. In summary, lower scores are more likely to represent\ pathogenic variants whereas higher scores could be pathogenic, but have a higher chance\ to be a false positive. For more information see the MTR-Viewer publication.

\ \

Methods

\ \

JARVIS

\

\ Scores were downloaded and converted to a single bigWig file. See the\ hg19 makeDoc and the\ hg38 makeDoc for more info.\

\ \

HMC

\

\ Scores were downloaded and converted to .bedGraph files with a custom Python \ script. The bedGraph files were then converted to bigWig files, as documented in our \ makeDoc hg19 build log.

\ \

MetaDome

\

\ The authors provided a bed file containing codon coordinates along with the scores. \ This file was parsed with a python script to create the two tracks. For the first track\ the scores were aggregated for each coordinate, then the lowest score chosen for any\ overlaps and the result written out to bedGraph format. The file was then converted\ to bigWig with the bedGraphToBigWig utility. For the second track the file\ was reorganized into a bed 4+3 and conveted to bigBed with the bedToBigBed\ utility.

\

\ See the hg19 makeDoc for details including the build script.

\

\ The raw MetaDome data can also be accessed via their Zenodo handle.

\ \

MTR

\

\ V2\ file was downloaded and columns were reshuffled as well as itemRgb added for the\ MTR All data track. For the MTR Scores track the file was parsed with a python\ script to pull out the highest possible MTR score for each of the 3 possible mutations\ at each base pair and 4 tracks built out of these values representing each mutation.

\

\ See the hg19 makeDoc entry on MTR for more info.

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

\ \

\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

\ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/hmc/hmc.bw stdout\
\

\ \

\ Please refer to our\ Data Access FAQ\ for more information.\

\ \ \

Credits

\ \

\ Thanks to Jean-Madeleine Desainteagathe (APHP Paris, France) for suggesting the JARVIS, MTR, HMC tracks. Thanks to Xialei Zhang for providing the HMC data file and to Dimitrios Vitsios and Slave Petrovski for helping clean up the hg38 JARVIS files for providing guidance on interpretation. Additional\ thanks to Laurens van de Wiel for providing the MetaDome data as well as guidance on the track development and interpretation. \

\ \

References

\ \

\ Vitsios D, Dhindsa RS, Middleton L, Gussow AB, Petrovski S.\ \ Prioritizing non-coding regions based on human genomic constraint and sequence context with deep\ learning.\ Nat Commun. 2021 Mar 8;12(1):1504.\ PMID: 33686085; PMC: PMC7940646\

\ \

\ Xiaolei Zhang, Pantazis I. Theotokis, Nicholas Li, the SHaRe Investigators, Caroline F. Wright, Kaitlin E. Samocha, Nicola Whiffin, James S. Ware\ \ Genetic constraint at single amino acid resolution improves missense variant prioritisation and gene discovery.\ Medrxiv 2022.02.16.22271023\

\ \

\ Wiel L, Baakman C, Gilissen D, Veltman JA, Vriend G, Gilissen C.\ \ MetaDome: Pathogenicity analysis of genetic variants through aggregation of homologous human protein\ domains.\ Hum Mutat. 2019 Aug;40(8):1030-1038.\ PMID: 31116477; PMC: PMC6772141\

\ \

\ Silk M, Petrovski S, Ascher DB.\ \ MTR-Viewer: identifying regions within genes under purifying selection.\ Nucleic Acids Res. 2019 Jul 2;47(W1):W121-W126.\ PMID: 31170280; PMC: PMC6602522\

\ \

\ Halldorsson BV, Eggertsson HP, Moore KHS, Hauswedell H, Eiriksson O, Ulfarsson MO, Palsson G,\ Hardarson MT, Oddsson A, Jensson BO et al.\ \ The sequences of 150,119 genomes in the UK Biobank.\ Nature. 2022 Jul;607(7920):732-740.\ PMID: 35859178; PMC: PMC9329122\

\ \ phenDis 1 bigDataUrl /gbdb/hg19/bbi/mtr2.bb\ filter.FDR 0\ filter.MTR 0\ filter.MTR_centile 0.001:25\ filterByRange.MTR_centile on\ filterLabel.FDR False discovery rate\ filterLabel.MTR MTR Score\ filterLabel.MTR_centile MTR Score percentile\ filterLabel.consequence Consequence\ filterLimits.MTR_centile 0:100\ filterValues.consequence missense_variant|Missense variant,synonymous_variant|Synonymous variant,stop_gained|Stop gained,NMD_transcript_variant|NMD transcript variant,splice_region_variant|Splice region variant,start_lost|Start lost,stop_retained_variant|Stop regained variant,incomplete_terminal_codon_variant|Incomplete codon variant,coding_sequence_variant|Coding sequence variant,splice_donor_variant|Splice donor variant,splice_acceptor_variant|Splice acceptor variant\ html constraintSuper\ itemRgb on\ longLabel MTR - Missense Tolerance Ratio Scores all annotations\ mouseOver $ref>$alt $MTR ${MTR_centile}\ parent constraintSuper\ priority 9.5\ shortLabel MTR All Data\ track mtrBed\ type bigBed 9 + 10\ visibility hide\ netGalGal3 Chicken Net netAlign galGal3 chainGalGal3 Chicken (May 2006 (WUGSC 2.1/galGal3)) Alignment Net 1 10 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Chicken (May 2006 (WUGSC 2.1/galGal3)) Alignment Net\ otherDb galGal3\ parent vertebrateChainNetViewnet off\ shortLabel Chicken Net\ subGroups view=net species=s010 clade=c01\ track netGalGal3\ type netAlign galGal3 chainGalGal3\ netMacFas5 Crab-eating macaque Net netAlign macFas5 chainMacFas5 Crab-eating macaque (Jun. 2013 (Macaca_fascicularis_5.0/macFas5)) Alignment Net 1 10 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Crab-eating macaque (Jun. 2013 (Macaca_fascicularis_5.0/macFas5)) Alignment Net\ otherDb macFas5\ parent primateChainNetViewnet off\ shortLabel Crab-eating macaque Net\ subGroups view=net species=s020 clade=c01\ track netMacFas5\ type netAlign macFas5 chainMacFas5\ netOryCun2 Rabbit Net netAlign oryCun2 chainOryCun2 Rabbit (Apr. 2009 (Broad/oryCun2)) Alignment Net 1 10 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Rabbit (Apr. 2009 (Broad/oryCun2)) Alignment Net\ otherDb oryCun2\ parent placentalChainNetViewnet off\ shortLabel Rabbit Net\ subGroups view=net species=s021 clade=c00\ track netOryCun2\ type netAlign oryCun2 chainOryCun2\ encTfChipPkENCFF300IYQ A549 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in A549 from ENCODE 3 (ENCFF300IYQ) 1 10 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in A549 from ENCODE 3 (ENCFF300IYQ)\ parent encTfChipPk off\ shortLabel A549 CTCF 2\ subGroups cellType=A549 factor=CTCF\ track encTfChipPkENCFF300IYQ\ wgEncodeHaibRnaSeqA549Dex1nmAlnRep1 A549 DEX1nM 1 bam A549 DEX 1 hr 1 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 10 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 DEX 1 hr 1 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel A549 DEX1nM 1\ subGroups view=Alignments cellType=t2A549 treatment=DEX1NM rep=rep1\ track wgEncodeHaibRnaSeqA549Dex1nmAlnRep1\ type bam\ agilentCgh2x400k Ag CGH 2x400k bed 4 . Agilent SurePrint G3 Human CGH Microarray 2x400K AMADID 021850 0 10 0 128 0 127 191 127 0 0 0 varRep 1 color 0,128,0\ longLabel Agilent SurePrint G3 Human CGH Microarray 2x400K AMADID 021850\ parent genotypeArrays\ priority 10\ shortLabel Ag CGH 2x400k\ track agilentCgh2x400k\ type bed 4 .\ affyExonProbeAmbiguous Ambiguous Probes bed 10 Affymetrix Human Exon Array Ambiguous Probes 1 10 218 112 214 236 183 234 0 0 0 expression 1 color 218,112,214\ longLabel Affymetrix Human Exon Array Ambiguous Probes\ parent affyExonProbe off\ shortLabel Ambiguous Probes\ subGroups view=v2Probe level=L5Ambiguous\ track affyExonProbeAmbiguous\ type bed 10\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_ctss_rev AorticSmsToFgf2_00hr15minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_reverse 0 10 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep3%20%28LK6%29.CNhs13568.12839-137B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12839-137B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_tpm_rev AorticSmsToFgf2_00hr15minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_reverse 1 10 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep3%20%28LK6%29.CNhs13568.12839-137B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12839-137B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4\ urlLabel FANTOM5 Details:\ gtexEqtlTissueBrainCerebellum brainCerebellum bed 9 + Expression QTL in Brain_Cerebellum from GTEx V6 0 10 238 238 0 246 246 127 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 238,238,0\ idInUrlSql select gene from gtexEqtlTissueBrainCerebellum where name='%s'\ longLabel Expression QTL in Brain_Cerebellum from GTEx V6\ parent gtexEqtlTissue on\ shortLabel brainCerebellum\ track gtexEqtlTissueBrainCerebellum\ dhcHumDerDenAncCcdsNonsynHighFreq CC Nonsyn HiF bigBed 4 + Modern Human Derived (HighFreq), Denisova Ancestral: CCDS Non-synonymous 3 10 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (HighFreq), Denisova Ancestral: CCDS Non-synonymous\ parent dhcHumDerDenAncCcds\ shortLabel CC Nonsyn HiF\ subGroups view=Ccds subset=CcdsNonsyn freq=HighFreq\ track dhcHumDerDenAncCcdsNonsynHighFreq\ wgEncodeUwDgfCd20ro01778Pk CD20+ Pk narrowPeak B cells CD20+ RO01778 DNaseI DGF Peaks from ENCODE/UW 0 10 0 0 0 127 127 127 0 0 0 regulation 1 longLabel B cells CD20+ RO01778 DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel CD20+ Pk\ subGroups view=Peaks cellType=t2BCELLSCD20RO01778 treatment=aNONE rep=rep1\ track wgEncodeUwDgfCd20ro01778Pk\ type narrowPeak\ wgEncodeDukeMapabilityRegionsExcludable Duke Excluded bed 6 Duke Excluded Regions from ENCODE/OpenChrom(Duke) 0 10 0 0 0 127 127 127 0 0 0 map 1 longLabel Duke Excluded Regions from ENCODE/OpenChrom(Duke)\ parent wgEncodeMapabilityViewXR off\ shortLabel Duke Excluded\ subGroups view=XR win=zNA lab=DUKE\ track wgEncodeDukeMapabilityRegionsExcludable\ type bed 6\ wgEncodeExonArraySuper ENC Exon Array ENCODE Exon Array 0 10 0 0 0 127 127 127 0 0 0

Description

\

\ These tracks display microarray data. Samples are hybridized to the\ Affymetrix Human\ Exon 1.0 GeneChip. In contrast to traditional microarrays, which are designed to measure\ overall gene expression, the Affymetrix exon arrays contain separate\ probesets for each exon. This allows large-scale measurement of\ alternative splicing, alternative polyadenylation, and alternative\ promoter usage. Additionally, analysis of the constitutive exons\ (those included in all transcripts) offer accurate measurement of\ overall gene expression levels. Further information on the\ design and content of exon arrays can be found\ here.\
\

\

Display Conventions

\

Items on these tracks pertain to Affymetrix exon array probesets.\ For\ information regarding specific microarray probesets, turn on the Affy Exon Array track, \ which can be found in the "Expression" track group. These tracks\ are multi-view composite tracks that contains multiple\ data types (views). Each view within each track\ has separate display controls, as described here.\ Most ENCODE tracks contain multiple subtracks, corresponding to\ multiple experimental conditions. If a track contains a large\ number of subtracks, only some subtracks will be displayed by default.\ The user can select which subtracks are displayed via the display controls\ on the track details pages.

\

Credits
\

\

These data were generated and analyzed as part of the ENCODE project, a\ genome-wide consortium project with the aim of cataloging all\ functional elements in the human genome. This effort includes\ collecting a variety of data across related experimental conditions, to\ facilitate integrative analysis. Consequently, additional ENCODE tracks may \ contain data that is relevant to the data in these tracks.

\

References

\

\ Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J. Gene expression and isoform variation\ analysis using Affymetrix Exon Arrays. BMC Genomics. 2008\ Nov 7;9:529.

\

Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J,\ Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y. Alternative\ splicing and differential gene expression in colon cancer detected by a\ whole genome exon array. BMC Genomics. 2006 Dec 27;7:325.

\

Data Release Policy

\

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset\ until nine months following the release of the dataset. This date is\ listed in the Restricted Until column on the track configuration page\ and the download page. The full data release policy for ENCODE is\ available here.

\ \ expression 0 group expression\ longLabel ENCODE Exon Array\ priority 10\ shortLabel ENC Exon Array\ superTrack on\ track wgEncodeExonArraySuper\ filterMap GIAB quality issue bigBed 3 NIST Genome-in-a-bottle: calls with low mapping quality or high coverage 1 10 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/bbi/problematic/filterMap.bb\ longLabel NIST Genome-in-a-bottle: calls with low mapping quality or high coverage\ parent problematic\ priority 10\ shortLabel GIAB quality issue\ track filterMap\ type bigBed 3\ visibility dense\ wgEncodeAwgTfbsSydhGm12878Chd1a301218aIggmusUniPk GM12878 CHD1 narrowPeak GM12878 TFBS Uniform Peaks of CHD1_(A301-218A) from ENCODE/Stanford/Analysis 1 10 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of CHD1_(A301-218A) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 CHD1\ subGroups tier=a10 cellType=a10GM12878 factor=CHD1 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Chd1a301218aIggmusUniPk\ wgEncodeBroadHistoneGm12878H3k4me2StdSig GM12878 H3K4m2 bigWig 0.040000 6559.600098 GM12878 H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 10 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel GM12878 H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H3k4me2StdSig\ type bigWig 0.040000 6559.600098\ wgEncodeOpenChromChipGm12878InputSig GM12878 Input DS bigWig 0.000000 3.131200 GM12878 Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 10 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal\ shortLabel GM12878 Input DS\ subGroups treatment=AANONE view=SIG factor=zCTRL cellType=t1GM12878\ track wgEncodeOpenChromChipGm12878InputSig\ type bigWig 0.000000 3.131200\ wgEncodeSunyRipSeqGm12878Pabpc1SigRep2 GM12878 PABPC1 2 bigWig 0.000000 51724.476562 GM12878 PABPC1 RIP-seq Signal Rep 2 from ENCODE/SUNY 2 10 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 PABPC1 RIP-seq Signal Rep 2 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewSignal off\ shortLabel GM12878 PABPC1 2\ subGroups view=Signal factor=PABPC1 cellType=t1GM12878 rep=rep2\ track wgEncodeSunyRipSeqGm12878Pabpc1SigRep2\ type bigWig 0.000000 51724.476562\ wgEncodeUwRepliSeqGm12878SumSignalRep1 GM12878 Sd 1 bigWig 2.000000 2332.000000 GM12878 Repli-seq Summed Densities Rep 1 from ENCODE/UW 0 10 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Repli-seq Summed Densities Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewSumSignal off\ shortLabel GM12878 Sd 1\ subGroups view=v5SumSignal cellType=t1GM12878 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm12878SumSignalRep1\ type bigWig 2.000000 2332.000000\ wgEncodeOpenChromSynthGm12892Pk GM12892 Syn Pk bed 9 + GM12892 DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom 0 10 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom\ origAssembly hg19\ parent wgEncodeOpenChromSynth off\ shortLabel GM12892 Syn Pk\ subGroups cellType=t3GM12892 treatment=aNone\ track wgEncodeOpenChromSynthGm12892Pk\ type bed 9 +\ wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep1V2 GM78 1x75D A 1 bam GM12878 single read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 10 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 single read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel GM78 1x75D A 1\ subGroups view=Aligns cellType=t1GM12878 insertLength=ilNa readType=r1x75D rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep1V2\ type bam\ wgEncodeHaibTfbsGm12878BatfPcr1xRawRep1 GM78 BATF PCR1 1 bigWig 0.181848 165.481003 GM12878 BATF PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 10 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 BATF PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 BATF PCR1 1\ subGroups view=RawSignal factor=BATF cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878BatfPcr1xRawRep1\ type bigWig 0.181848 165.481003\ wgEncodeCshlLongRnaSeqGm12878CellPapAlnRep2 GM78 cel pA+ A 2 bam GM12878 whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 10 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel GM78 cel pA+ A 2\ subGroups view=Alignments cellType=t1GM12878 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878CellPapAlnRep2\ type bam\ wgEncodeSydhTfbsGm12878Chd1a301218aIggmusSig GM78 CHD1 IgM bigWig 1.000000 12439.000000 GM12878 CHD1 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 10 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 CHD1 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 CHD1 IgM\ subGroups view=Signal factor=CHD1A301218A cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Chd1a301218aIggmusSig\ type bigWig 1.000000 12439.000000\ wgEncodeCshlShortRnaSeqGm12878ChromatinTapPlusRep4 GM78 chrm TAP + 2 bigWig 1.000000 17276008.000000 GM12878 TAP-only chromatin small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 10 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only chromatin small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel GM78 chrm TAP + 2\ subGroups view=PlusSignal cellType=t1GM12878 localization=CHROMATIN protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqGm12878ChromatinTapPlusRep4\ type bigWig 1.000000 17276008.000000\ wgEncodeRikenCageGm12878CytosolPapAlnRep1 GM78 cyto pA+ A 1 bam GM12878 cytosol polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 10 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel GM78 cyto pA+ A 1\ subGroups view=Alignments cellType=t1GM12878 localization=cytosol rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageGm12878CytosolPapAlnRep1\ type bam\ wgEncodeUwHistoneGm12878H3k27me3StdHotspotsRep2 GM78 H3K27M3 Ht 2 broadPeak GM12878 H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 10 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot on\ shortLabel GM78 H3K27M3 Ht 2\ subGroups view=Hot factor=H3K27ME3 cellType=t1GM12878 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm12878H3k27me3StdHotspotsRep2\ type broadPeak\ wgEncodeUncBsuProtGencH1neuronsCellMudpitmPepMapGcFt H1-neurons Ce PTM bigBed 12 H1-neurons MudPIT ProtG GENCODE10 Hg19 PTM Mapping from ENCODE/UNC/BSU 2 10 0 0 0 127 127 127 1 0 0 expression 1 longLabel H1-neurons MudPIT ProtG GENCODE10 Hg19 PTM Mapping from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtGencViewmPepMapGcFt\ shortLabel H1-neurons Ce PTM\ subGroups view=mPepMapGcFt cellType=H1NEURONS localization=CELL protocol=MUDPIT\ track wgEncodeUncBsuProtGencH1neuronsCellMudpitmPepMapGcFt\ type bigBed 12\ wgEncodeGisRnaPetH1hescCellPapMinusRawRep1 H1ES cell pA+ - 1 bigWig 1.000000 412298.000000 H1-hESC whole cell polyA+ clone-free RNA PET Minus Signal Rep 1 from ENCODE/GIS 2 10 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA+ clone-free RNA PET Minus Signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig on\ shortLabel H1ES cell pA+ - 1\ subGroups view=v2MinusRawSignal cellType=aH1HESC cloned=Free localization=cell rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetH1hescCellPapMinusRawRep1\ type bigWig 1.000000 412298.000000\ wgEncodeSunyAlbanyGeneStH1hescRipinputRbpAssocRnaV2 H1hESC RIP-Input broadPeak H1-hESC RIP-Input RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 10 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC RIP-Input RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt off\ shortLabel H1hESC RIP-Input\ subGroups factor=ripInput cellType=t1H1HESC\ track wgEncodeSunyAlbanyGeneStH1hescRipinputRbpAssocRnaV2\ type broadPeak\ wgEncodeFsuRepliChipH7esWaveSignalRep1 H7-hESC 1 bigWig -1.907256 1.951967 H7-hESC Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU 0 10 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU\ parent wgEncodeFsuRepliChip off\ shortLabel H7-hESC 1\ subGroups view=WaveSignal cellType=t3H7HESC rep=rep1\ track wgEncodeFsuRepliChipH7esWaveSignalRep1\ type bigWig -1.907256 1.951967\ hapmapSnpsTSI HapMap SNPs TSI bed 6 + HapMap SNPs from the TSI Population (Toscani in Italia) 0 10 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HapMap SNPs from the TSI Population (Toscani in Italia)\ parent hapmapSnps\ priority 10\ shortLabel HapMap SNPs TSI\ track hapmapSnpsTSI\ wgEncodeHaibMethylRrbsHelas3HaibSitesRep2 HeLa-S3 2 bed 9 + HeLa-S3 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 10 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HeLa-S3 2\ subGroups cellType=t2HELAS3 obtainedBy=HAIB treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHelas3HaibSitesRep2\ type bed 9 +\ wgEncodeAwgSegmentationChromhmmHelas3 HeLa-S3 ChromHMM bed 9 . HeLa-S3 Genome Segmentation by ChromHMM from ENCODE/Analysis 0 10 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HeLa-S3 Genome Segmentation by ChromHMM from ENCODE/Analysis\ parent wgEncodeAwgSegmentation off\ shortLabel HeLa-S3 ChromHMM\ subGroups tier=t2 cellType=t2HELAS3 method=ChromHMM\ track wgEncodeAwgSegmentationChromhmmHelas3\ type bed 9 .\ lincRNAsCThLF_r2 hLF_r2 bed 5 + lincRNAs from hlf_r2 1 10 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from hlf_r2\ parent lincRNAsAllCellType on\ shortLabel hLF_r2\ subGroups view=lincRNAsRefseqExp tissueType=hlf_r2\ track lincRNAsCThLF_r2\ wgEncodeUwAffyExonArrayHuvecSimpleSignalRep1 HUVEC 1 broadPeak HUVEC Exon array Signal Rep 1 from ENCODE/UW 0 10 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HUVEC 1\ subGroups cellType=t2HUVEC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHuvecSimpleSignalRep1\ type broadPeak\ wgEncodeHaibGenotypeImr90RegionsRep2 IMR90 2 bed 9 + IMR90 Copy number variants Replicate 2 from ENCODE/HAIB 0 10 0 0 0 127 127 127 0 0 0 varRep 1 longLabel IMR90 Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel IMR90 2\ subGroups cellType=t2IMR90 obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeImr90RegionsRep2\ type bed 9 +\ wgEncodeUwTfbsK562CtcfStdRawRep1 K562 CTCF Sg 1 bigWig 1.000000 8445.000000 K562 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 10 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig on\ shortLabel K562 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t1K562 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsK562CtcfStdRawRep1\ type bigWig 1.000000 8445.000000\ wgEncodeGisRnaSeqK562CytosolPapMinusRawRep2 K562 cyto pA+ - 2 bigWig 1.000000 25356.000000 K562 cytosol polyA+ RNA-seq Minus raw signal rep 2 from ENCODE/GIS 2 10 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA+ RNA-seq Minus raw signal rep 2 from ENCODE/GIS\ parent wgEncodeGisRnaSeqViewMinusRawSignal on\ shortLabel K562 cyto pA+ - 2\ subGroups view=MinusRawSignal cellType=t1K562 rnaExtract=longPolyA rep=rep2 localization=cytosol\ track wgEncodeGisRnaSeqK562CytosolPapMinusRawRep2\ type bigWig 1.000000 25356.000000\ wgEncodeOpenChromDnaseK562G2mphasePk K562 G2-M Pk narrowPeak K562 G2-M phase DNaseI HS Peaks from ENCODE/Duke 3 10 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 G2-M phase DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel K562 G2-M Pk\ subGroups view=Peaks cellType=t1K562 treatment=G2MPHASE\ track wgEncodeOpenChromDnaseK562G2mphasePk\ type narrowPeak\ wgEncodeUwDnaseK562HotspotsRep1 K562 Ht 1 broadPeak K562 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 10 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot\ shortLabel K562 Ht 1\ subGroups view=Hot cellType=t1K562 rep=rep1 treatment=None\ track wgEncodeUwDnaseK562HotspotsRep1\ type broadPeak\ wgEncodeUchicagoTfbsK562EjundControlSig K562 JunD/GFP Sg bigWig -4305.450684 19676.619141 K562 JunD GFP-tag TFBS Signal from ENCODE/UChicago 2 10 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 JunD GFP-tag TFBS Signal from ENCODE/UChicago\ parent wgEncodeUchicagoTfbsViewSignal\ shortLabel K562 JunD/GFP Sg\ subGroups view=Signal factor=JunD cellType=K562 control=ControlJunD rep=repPOOLED\ track wgEncodeUchicagoTfbsK562EjundControlSig\ type bigWig -4305.450684 19676.619141\ wgEncodeDukeAffyExonK562NabutSimpleSignalRep3 K562 Nabut 3 bigBed 6 + K562 NaBut Exon array Signal Rep 3 from ENCODE/Duke 0 10 46 0 184 150 127 219 1 0 0 expression 1 color 46,0,184\ longLabel K562 NaBut Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel K562 Nabut 3\ subGroups cellType=t1K562 treatment=NABUT rep=rep3\ track wgEncodeDukeAffyExonK562NabutSimpleSignalRep3\ type bigBed 6 +\ wgEncodeAffyRnaChipFiltTransfragsK562PolysomeLongnonpolya K562 psom pA- broadPeak K562 polysome polyA- Microarray Transfrags from ENCODE Affy/CSHL 3 10 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 polysome polyA- Microarray Transfrags from ENCODE Affy/CSHL\ parent wgEncodeAffyRnaChipViewFiltTransfrags\ shortLabel K562 psom pA-\ subGroups view=FiltTransfrags cellType=t1K562 localization=cPOLYSOME rnaExtract=longNonPolyA\ track wgEncodeAffyRnaChipFiltTransfragsK562PolysomeLongnonpolya\ type broadPeak\ wgEncodeOpenChromFaireK562OhureaPk K562 urea FAIR Pk narrowPeak K562 Hydroxyurea FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 10 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 Hydroxyurea FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel K562 urea FAIR Pk\ subGroups view=Peaks cellType=t1K562 treatment=HYDROUREA\ track wgEncodeOpenChromFaireK562OhureaPk\ type narrowPeak\ dhcVcfHGDP01284 Mandenka Variants vcfTabix Mandenka Individual (HGDP01284) Variant Calls 0 10 0 0 0 127 127 127 0 0 0 denisova 1 longLabel Mandenka Individual (HGDP01284) Variant Calls\ parent dhcVcfModern\ priority 10\ shortLabel Mandenka Variants\ track dhcVcfHGDP01284\ vcfDoMaf off\ wgEncodeSydhHistoneMcf7H3k09me3UcdPk MCF-7 H3K9me3 narrowPeak MCF-7 H3K9me3 Histone Modifications by ChIP-seq Peaks from ENCODE/SYDH 3 10 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 H3K9me3 Histone Modifications by ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks off\ shortLabel MCF-7 H3K9me3\ subGroups view=Peaks factor=H3K09ME3 cellType=bMCF7 control=UCD treatment=NONE\ track wgEncodeSydhHistoneMcf7H3k09me3UcdPk\ type narrowPeak\ wgEncodeGisChiaPetMcf7CtcfSigRep1 MCF7 CTCF Sig 1 bigWig 1.000000 3954.000000 MCF-7 CTCF ChIA-PET Signal Rep 1 from ENCODE/GIS-Ruan 2 10 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 CTCF ChIA-PET Signal Rep 1 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetSignal off\ shortLabel MCF7 CTCF Sig 1\ subGroups view=Signal factor=CTCF cellType=t2MCF7 rep=rep1\ track wgEncodeGisChiaPetMcf7CtcfSigRep1\ type bigWig 1.000000 3954.000000\ wgEncodeAwgDnaseUwMonocytescd14ro01746UniPk Mcyte-CD14+ DNase narrowPeak Monocytes-CD14+ DNaseI HS Uniform Peaks from ENCODE/Analysis 1 10 80 80 80 167 167 167 1 0 0 regulation 1 color 80,80,80\ longLabel Monocytes-CD14+ DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform on\ shortLabel Mcyte-CD14+ DNase\ subGroups tier=a25 cellType=a25Monocytes-CD14\ track wgEncodeAwgDnaseUwMonocytescd14ro01746UniPk\ unipMut Mutations bigBed 12 + UniProt Amino Acid Mutations 1 10 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg19/uniprot/unipMut.bb\ longLabel UniProt Amino Acid Mutations\ parent uniprot\ priority 10\ shortLabel Mutations\ track unipMut\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#pathology_and_biotech" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$" variationId="http://www.uniprot.org/uniprot/$$"\ visibility dense\ uMassBrainHistoneSignalS7NeuP8pt8yrsM NeuN+ 8yrs M bigWig UMMS Brain Histone H3K4me3 (NeuN+ D7) Gender-male Age-8.8 2 10 41 158 41 148 206 148 0 0 0 regulation 0 color 41,158,41\ longLabel UMMS Brain Histone H3K4me3 (NeuN+ D7) Gender-male Age-8.8\ parent uMassBrainHistoneViewSignal\ shortLabel NeuN+ 8yrs M\ subGroups view=Signal donor=h_7 cellType=norm sex=male age=b_young\ track uMassBrainHistoneSignalS7NeuP8pt8yrsM\ type bigWig\ nextera-dna-exome-targeted-regions-manifest-v1-2 Nextera DNA V1.2 T bigBed 4 Illumina - Nextera DNA Exome V1.2 Target Regions 0 10 22 62 164 138 158 209 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/nextera-dna-exome-targeted-regions-manifest-v1-2.bb\ color 22,62,164\ longLabel Illumina - Nextera DNA Exome V1.2 Target Regions\ parent exomeProbesets off\ shortLabel Nextera DNA V1.2 T\ track nextera-dna-exome-targeted-regions-manifest-v1-2\ type bigBed 4\ iscaPathLossCum Path Loss bedGraph 4 ClinGen CNVs: Pathogenic Loss Coverage 2 10 200 0 0 227 127 127 0 0 0 phenDis 0 color 200,0,0\ longLabel ClinGen CNVs: Pathogenic Loss Coverage\ parent iscaViewTotal\ shortLabel Path Loss\ subGroups view=cov class=path level=sub\ track iscaPathLossCum\ polyASeqSites PolyA-Seq bed Poly(A)-sequencing from Merck Research Laboratories 0 10 0 0 0 127 127 127 0 0 0

Description

\ \

\ This track displays the location of RNA polyadenylation (polyA) sites based\ on high-throughput RNA sequencing using the PolyA-seq protocol.\

\ \

\ PolyA-Seq data is strand-specific, therefore two tracks are provided for each tissue. PolyA\ site positions correspond to a single base, namely the ends of read alignments immediately\ upstream of the polyadenylation site. The data provided in this track consists of filtered\ polyA sites (see Methods). When multiple sites occurred within a 30-bp window on the same\ strand, the sum of the reads was attributed to the site with the most reads. Units are in\ reads per million (RPM) aligned. To obtain read counts, multiply RPM values by the total\ number of filtered reads for the corresponding experiment:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
SampleFiltered reads
MAQC Universal Human Reference 15057048
MAQC Universal Human Reference 25030985
MAQC Brain 14086039
MAQC Brain 23921040
Brain2980439
Kidney4626843
Liver5626271
Muscle4920121
Testis5098780
\ \

Display Conventions and Configuration

\ \

\ These tracks may be configured in a variety of ways to highlight different \ aspects of the displayed data. The graphical configuration options \ are shown at the top of the track description page. For more information, \ see Configuring \ graph-based tracks.\

\ \

\ In the full and pack display modes, forward-strand tracks are shown in \ red and reverse-strand tracks are shown in black.\ In the squish and dense display modes, intensity is represented in grayscale (the darker\ the shading, the higher the intensity). To show only selected subtracks, uncheck the boxes next to\ the tracks that \ you wish to hide.\

\ \

Methods

\ \

\ A detailed explanation of the experimental methods is provided at NCBI's Gene \ Expression Omnibus under accession GSE30198. Briefly, PolyA+ RNA was reverse-transcribed\ using a T(10)VN primer and strand-specific universal adapters, amplified, and sequenced\ on an Illumina GAIIx sequencer. Reads were reverse-complemented, aligned to the corresponding\ reference genome and splice junctions, and retained only if they aligned uniquely. 3' ends of\ alignments were considered polyA sites. Sites were then filtered using downstream base\ frequency matrices for true- and false-positive sites determined from a modified experiment \ based on a T(10) primer (i.e., excluding the 3' VN). When multiple filtered sites occurred\ within a 30-nt window on the same strand, read counts were summed and attributed to the most\ abundant peak. For each tissue, read counts were then divided by the total number of reads,\ in millions, from all filtered sites.\

\ \

Credits

\ \

\ These data were generated at Merck Research\ Laboratories and submitted by Adnan Derti and Tomas Babak.\

\ \

Data Release Policy

\ \

No restrictions.

\ rna 1 compositeTrack on\ dimensions dimensionY=tissType dimensionX=strand\ dragAndDrop subTracks\ group rna\ longLabel Poly(A)-sequencing from Merck Research Laboratories\ noInherit on\ priority 10\ shortLabel PolyA-Seq\ sortOrder tissType=+ strand=+ view=+\ subGroup1 view Views Signal=Signal\ subGroup2 tissType Tissue_Type Kidney=Kidney Brain=Brain Liver=Liver MaqcBrain1=MAQC_Brain_1 MaqcBrain2=MAQC_Brain_2 MaqcUhr1=MAQC_UHR_1 MaqcUhr2=MAQC_UHR_2 Muscle=Muscle Testis=Testis\ subGroup3 strand Strand fwd=Forward rev=Reverse\ track polyASeqSites\ type bed\ visibility hide\ polyASeqSitesMaqcBrain2Rev PolyA-Seq MaqcBrain2 bigWig 0.260000 17027.939453 Poly(A)-tail sequencing of MAQC Brain (replicate 2) from Merck (Rev strand) 2 10 0 0 0 127 127 127 0 0 0 rna 0 color 0,0,0\ longLabel Poly(A)-tail sequencing of MAQC Brain (replicate 2) from Merck (Rev strand)\ parent polyASeqSitesSignalView\ shortLabel PolyA-Seq MaqcBrain2\ subGroups view=Signal tissType=MaqcBrain2 strand=rev\ track polyASeqSitesMaqcBrain2Rev\ type bigWig 0.260000 17027.939453\ phastCons46wayPrimates Primate Cons wig 0 1 Primate Conservation by PhastCons 0 10 10 70 10 70 10 10 0 0 0 compGeno 0 altColor 70,10,10\ autoScale off\ color 10,70,10\ configurable on\ longLabel Primate Conservation by PhastCons\ maxHeightPixels 100:40:11\ noInherit on\ parent cons46wayViewphastcons off\ priority 10\ shortLabel Primate Cons\ spanList 1\ subGroups view=phastcons clade=primate\ track phastCons46wayPrimates\ type wig 0 1\ windowingFunction mean\ burgeRnaSeqGemMapperAlignHeart RNA-seq Heart bed 12 Burge Lab RNA-seq 32mer Reads from Heart 1 10 12 12 120 133 133 187 0 0 0 expression 1 longLabel Burge Lab RNA-seq 32mer Reads from Heart\ parent burgeRnaSeqGemMapperAlignViewAlignments off\ shortLabel RNA-seq Heart\ subGroups view=Alignments tissueType=heart\ track burgeRnaSeqGemMapperAlignHeart\ decodeMaleFemaleDifference Sex Difference bigWig -65 94 deCODE recombination map, male minus female difference 2 10 0 0 128 128 0 0 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 0 altColor 128,0,0\ color 0,0,128\ configurable on\ longLabel deCODE recombination map, male minus female difference\ parent diffView\ priority 10\ shortLabel Sex Difference\ subGroups view=diff\ track decodeMaleFemaleDifference\ type bigWig -65 94\ viewLimits -20:20\ polyASeqSitesSignalView Signal bigWig -1 2 Poly(A)-sequencing from Merck Research Laboratories 2 10 0 0 0 127 127 127 0 0 0 rna 0 autoScale on\ longLabel Poly(A)-sequencing from Merck Research Laboratories\ maxHeightPixels 50:50:5\ parent polyASeqSites\ shortLabel Signal\ track polyASeqSitesSignalView\ type bigWig -1 2\ view Signal\ visibility full\ yLineOnOff on\ wgEncodeHaibMethyl450SknshSitesRep1 SK-N-SH bed 9 SK-N-SH Methylation 450K Bead Array from ENCODE/HAIB 1 10 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel SK-N-SH\ subGroups cellType=t2SKNSH obtainedBy=HAIB treatment=zNONE\ track wgEncodeHaibMethyl450SknshSitesRep1\ type bed 9\ pgTk1Indel TK1 indels pgSnp TK1 Genome Variants indels 3 10 0 0 0 127 127 127 0 0 0 varRep 1 longLabel TK1 Genome Variants indels\ origAssembly hg18\ parent pgSnpPSU\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel TK1 indels\ subGroups view=A_PSU id=AD_TK1 type=Indel\ track pgTk1Indel\ transMapEnsemblV5 TransMap Ensembl bigPsl TransMap Ensembl and GENCODE Mappings Version 5 3 10.001 0 100 0 127 177 127 0 0 0

Description

\ \

\ This track contains GENCODE or Ensembl alignments produced by\ the TransMap cross-species alignment algorithm from other vertebrate\ species in the UCSC Genome Browser. GENCODE is Ensembl for human and mouse,\ for other Ensembl sources, only ones with full gene builds are used.\ Projection Ensembl gene annotations will not be used as sources.\ For closer evolutionary distances, the alignments are created using\ syntenically filtered BLASTZ alignment chains, resulting in a prediction of the\ orthologous genes in human.\

\ \ \

Display Conventions and Configuration

\ \

\ This track follows the display conventions for \ PSL alignment tracks.

\

\ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare cDNAs against the genomic sequence. For more \ information about this option, click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\ \

Methods

\ \

\

    \
  1. Source transcript alignments were obtained from vertebrate organisms\ in the UCSC Genome Browser Database. BLAT alignments of RefSeq Genes, GenBank \ mRNAs, and GenBank Spliced ESTs to the cognate genome, along with UCSC Genes,\ were used as available.\
  2. For all vertebrate assemblies that had BLASTZ alignment chains and\ nets to the human (hg19) genome, a subset of the alignment chains were\ selected as follows:\
      \
    • For organisms whose branch distance was no more than 0.5\ (as computed by phyloFit, see Conservation track description for details),\ syntenic filtering was used. Reciprocal best nets were used if available;\ otherwise, nets were selected with the netfilter -syn command.\ The chains corresponding to the selected nets were used for mapping.\
    • For more distant species, where the determination of synteny is difficult,\ the full set of chains was used for mapping. This allows for more genes to\ map at the expense of some mapping to paralogous regions. The\ post-alignment filtering step removes some of the duplications.\
    \
  3. The pslMap program was used to do a base-level projection of\ the source transcript alignments via the selected chains\ to the human genome, resulting in pairwise alignments of the source transcripts to\ the genome.\
  4. The resulting alignments were filtered with pslCDnaFilter\ with a global near-best criteria of 0.5% in finished genomes\ (human and mouse) and 1.0% in other genomes. Alignments\ where less than 20% of the transcript mapped were discarded.\
\

\ \

\ To ensure unique identifiers for each alignment, cDNA and gene accessions were\ made unique by appending a suffix for each location in the source genome and\ again for each mapped location in the destination genome. The format is:\ 

\
   accession.version-srcUniq.destUniq\
\ \ Where srcUniq is a number added to make each source alignment unique, and\ destUniq is added to give the subsequent TransMap alignments unique\ identifiers.\

\

\ For example, in the cow genome, there are two alignments of mRNA BC149621.1.\ These are assigned the identifiers BC149621.1-1 and BC149621.1-2.\ When these are mapped to the human genome, BC149621.1-1 maps to a single\ location and is given the identifier BC149621.1-1.1. However, BC149621.1-2\ maps to two locations, resulting in BC149621.1-2.1 and BC149621.1-2.2. Note\ that multiple TransMap mappings are usually the result of tandem duplications, where both\ chains are identified as syntenic.\

\ \

Data Access

\ \

\ The raw data for these tracks can be accessed interactively through the\ Table Browser or the\ Data Integrator.\ For automated analysis, the annotations are stored in\ bigPsl files (containing a\ number of extra columns) and can be downloaded from our\ download server, \ or queried using our API. For more \ information on accessing track data see our \ Track Data Access FAQ.\ The files are associated with these tracks in the following way:\

    \
  • TransMap Ensembl - hg19.ensembl.transMapV4.bigPsl
    • \
  • TransMap RefGene - hg19.refseq.transMapV4.bigPsl
    • \
  • TransMap RNA - hg19.rna.transMapV4.bigPsl
    • \
  • TransMap ESTs - hg19.est.transMapV4.bigPsl
    • \
\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as\ a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, for example:\

\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/transMap/V4/hg19.refseq.transMapV4.bigPsl\ -chrom=chr6 -start=0 -end=1000000 stdout\ \ \

Credits

\ \

\ This track was produced by Mark Diekhans at UCSC from cDNA and EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide and annotations produced by the RefSeq,\ Ensembl, and GENCODE annotations projects.

\ \

References

\

\ Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S,\ Lau C et al.\ \ Targeted discovery of novel human exons by comparative genomics.\ Genome Res. 2007 Dec;17(12):1763-73.\ PMID: 17989246; PMC: PMC2099585\

\ \

\ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\

\ \

\ Zhu J, Sanborn JZ, Diekhans M, Lowe CB, Pringle TH, Haussler D.\ \ Comparative genomics search for losses of long-established genes on the human lineage.\ PLoS Comput Biol. 2007 Dec;3(12):e247.\ PMID: 18085818; PMC: PMC2134963\

\ \ genes 1 baseColorDefault diffCodons\ baseColorUseCds given\ baseColorUseSequence lfExtra\ bigDataUrl /gbdb/hg19/transMap/V5/hg19.ensembl.transMapV5.bigPsl\ canPack on\ color 0,100,0\ defaultLabelFields orgAbbrev,geneName\ group genes\ html transMapEnsembl\ indelDoubleInsert on\ indelQueryInsert on\ labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName,geneId,geneType,transcriptType\ labelSeparator " "\ longLabel TransMap Ensembl and GENCODE Mappings Version 5\ priority 10.001\ searchIndex name,srcTransId,geneName,geneId\ shortLabel TransMap Ensembl\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ superTrack transMapV5 pack\ track transMapEnsemblV5\ transMapSrcSet ensembl\ type bigPsl\ visibility pack\ transMapRefSeqV5 TransMap RefGene bigPsl TransMap RefSeq Gene Mappings Version 5 3 10.003 0 100 0 127 177 127 0 0 0

Description

\ \

\ This track contains RefSeq Gene alignments produced by\ the TransMap cross-species alignment algorithm\ from other vertebrate species in the UCSC Genome Browser.\ For closer evolutionary distances, the alignments are created using\ syntenically filtered BLASTZ alignment chains, resulting in a prediction of the\ orthologous genes in human.\

\ \ \

Display Conventions and Configuration

\ \

\ This track follows the display conventions for \ PSL alignment tracks.

\

\ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare cDNAs against the genomic sequence. For more \ information about this option, click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\ \

Methods

\ \

\

    \
  1. Source transcript alignments were obtained from vertebrate organisms\ in the UCSC Genome Browser Database. BLAT alignments of RefSeq Genes, GenBank \ mRNAs, and GenBank Spliced ESTs to the cognate genome, along with UCSC Genes,\ were used as available.\
  2. For all vertebrate assemblies that had BLASTZ alignment chains and\ nets to the human (hg19) genome, a subset of the alignment chains were\ selected as follows:\
      \
    • For organisms whose branch distance was no more than 0.5\ (as computed by phyloFit, see Conservation track description for details),\ syntenic filtering was used. Reciprocal best nets were used if available;\ otherwise, nets were selected with the netfilter -syn command.\ The chains corresponding to the selected nets were used for mapping.\
    • For more distant species, where the determination of synteny is difficult,\ the full set of chains was used for mapping. This allows for more genes to\ map at the expense of some mapping to paralogous regions. The\ post-alignment filtering step removes some of the duplications.\
    \
  3. The pslMap program was used to do a base-level projection of\ the source transcript alignments via the selected chains\ to the human genome, resulting in pairwise alignments of the source transcripts to\ the genome.\
  4. The resulting alignments were filtered with pslCDnaFilter\ with a global near-best criteria of 0.5% in finished genomes\ (human and mouse) and 1.0% in other genomes. Alignments\ where less than 20% of the transcript mapped were discarded.\
\

\ \

\ To ensure unique identifiers for each alignment, cDNA and gene accessions were\ made unique by appending a suffix for each location in the source genome and\ again for each mapped location in the destination genome. The format is:\ 

\
   accession.version-srcUniq.destUniq\
\ \ Where srcUniq is a number added to make each source alignment unique, and\ destUniq is added to give the subsequent TransMap alignments unique\ identifiers.\

\

\ For example, in the cow genome, there are two alignments of mRNA BC149621.1.\ These are assigned the identifiers BC149621.1-1 and BC149621.1-2.\ When these are mapped to the human genome, BC149621.1-1 maps to a single\ location and is given the identifier BC149621.1-1.1. However, BC149621.1-2\ maps to two locations, resulting in BC149621.1-2.1 and BC149621.1-2.2. Note\ that multiple TransMap mappings are usually the result of tandem duplications, where both\ chains are identified as syntenic.\

\ \

Data Access

\ \

\ The raw data for these tracks can be accessed interactively through the\ Table Browser or the\ Data Integrator.\ For automated analysis, the annotations are stored in\ bigPsl files (containing a\ number of extra columns) and can be downloaded from our\ download server, \ or queried using our API. For more \ information on accessing track data see our \ Track Data Access FAQ.\ The files are associated with these tracks in the following way:\

    \
  • TransMap Ensembl - hg19.ensembl.transMapV4.bigPsl
    • \
  • TransMap RefGene - hg19.refseq.transMapV4.bigPsl
    • \
  • TransMap RNA - hg19.rna.transMapV4.bigPsl
    • \
  • TransMap ESTs - hg19.est.transMapV4.bigPsl
    • \
\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as\ a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, for example:\

\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/transMap/V4/hg19.refseq.transMapV4.bigPsl\ -chrom=chr6 -start=0 -end=1000000 stdout\ \ \

Credits

\ \

\ This track was produced by Mark Diekhans at UCSC from cDNA and EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide and annotations produced by the RefSeq,\ Ensembl, and GENCODE annotations projects.

\ \

References

\

\ Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S,\ Lau C et al.\ \ Targeted discovery of novel human exons by comparative genomics.\ Genome Res. 2007 Dec;17(12):1763-73.\ PMID: 17989246; PMC: PMC2099585\

\ \

\ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\

\ \

\ Zhu J, Sanborn JZ, Diekhans M, Lowe CB, Pringle TH, Haussler D.\ \ Comparative genomics search for losses of long-established genes on the human lineage.\ PLoS Comput Biol. 2007 Dec;3(12):e247.\ PMID: 18085818; PMC: PMC2134963\

\ \ genes 1 baseColorDefault diffCodons\ baseColorUseCds given\ baseColorUseSequence lfExtra\ bigDataUrl /gbdb/hg19/transMap/V5/hg19.refseq.transMapV5.bigPsl\ canPack on\ color 0,100,0\ defaultLabelFields orgAbbrev,geneName\ group genes\ html transMapRefSeq\ indelDoubleInsert on\ indelQueryInsert on\ labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName,geneId\ labelSeparator " "\ longLabel TransMap RefSeq Gene Mappings Version 5\ priority 10.003\ searchIndex name,srcTransId,geneName,geneId\ shortLabel TransMap RefGene\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ superTrack transMapV5 pack\ track transMapRefSeqV5\ transMapSrcSet refseq\ type bigPsl\ visibility pack\ transMapRnaV5 TransMap RNA bigPsl TransMap GenBank RNA Mappings Version 5 0 10.004 0 100 0 127 177 127 0 0 0

Description

\ \

\ This track contains GenBank mRNA alignments produced by\ the TransMap cross-species alignment algorithm\ from other vertebrate species in the UCSC Genome Browser.\ For closer evolutionary distances, the alignments are created using\ syntenically filtered BLASTZ alignment chains, resulting in a prediction of the\ orthologous genes in human.\

\ \ \

Display Conventions and Configuration

\ \

\ This track follows the display conventions for \ PSL alignment tracks.

\

\ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare cDNAs against the genomic sequence. For more \ information about this option, click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\ \

Methods

\ \

\

    \
  1. Source transcript alignments were obtained from vertebrate organisms\ in the UCSC Genome Browser Database. BLAT alignments of RefSeq Genes, GenBank \ mRNAs, and GenBank Spliced ESTs to the cognate genome, along with UCSC Genes,\ were used as available.\
  2. For all vertebrate assemblies that had BLASTZ alignment chains and\ nets to the human (hg19) genome, a subset of the alignment chains were\ selected as follows:\
      \
    • For organisms whose branch distance was no more than 0.5\ (as computed by phyloFit, see Conservation track description for details),\ syntenic filtering was used. Reciprocal best nets were used if available;\ otherwise, nets were selected with the netfilter -syn command.\ The chains corresponding to the selected nets were used for mapping.\
    • For more distant species, where the determination of synteny is difficult,\ the full set of chains was used for mapping. This allows for more genes to\ map at the expense of some mapping to paralogous regions. The\ post-alignment filtering step removes some of the duplications.\
    \
  3. The pslMap program was used to do a base-level projection of\ the source transcript alignments via the selected chains\ to the human genome, resulting in pairwise alignments of the source transcripts to\ the genome.\
  4. The resulting alignments were filtered with pslCDnaFilter\ with a global near-best criteria of 0.5% in finished genomes\ (human and mouse) and 1.0% in other genomes. Alignments\ where less than 20% of the transcript mapped were discarded.\
\

\ \

\ To ensure unique identifiers for each alignment, cDNA and gene accessions were\ made unique by appending a suffix for each location in the source genome and\ again for each mapped location in the destination genome. The format is:\ 

\
   accession.version-srcUniq.destUniq\
\ \ Where srcUniq is a number added to make each source alignment unique, and\ destUniq is added to give the subsequent TransMap alignments unique\ identifiers.\

\

\ For example, in the cow genome, there are two alignments of mRNA BC149621.1.\ These are assigned the identifiers BC149621.1-1 and BC149621.1-2.\ When these are mapped to the human genome, BC149621.1-1 maps to a single\ location and is given the identifier BC149621.1-1.1. However, BC149621.1-2\ maps to two locations, resulting in BC149621.1-2.1 and BC149621.1-2.2. Note\ that multiple TransMap mappings are usually the result of tandem duplications, where both\ chains are identified as syntenic.\

\ \

Data Access

\ \

\ The raw data for these tracks can be accessed interactively through the\ Table Browser or the\ Data Integrator.\ For automated analysis, the annotations are stored in\ bigPsl files (containing a\ number of extra columns) and can be downloaded from our\ download server, \ or queried using our API. For more \ information on accessing track data see our \ Track Data Access FAQ.\ The files are associated with these tracks in the following way:\

    \
  • TransMap Ensembl - hg19.ensembl.transMapV4.bigPsl
    • \
  • TransMap RefGene - hg19.refseq.transMapV4.bigPsl
    • \
  • TransMap RNA - hg19.rna.transMapV4.bigPsl
    • \
  • TransMap ESTs - hg19.est.transMapV4.bigPsl
    • \
\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as\ a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, for example:\

\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/transMap/V4/hg19.refseq.transMapV4.bigPsl\ -chrom=chr6 -start=0 -end=1000000 stdout\ \ \

Credits

\ \

\ This track was produced by Mark Diekhans at UCSC from cDNA and EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide and annotations produced by the RefSeq,\ Ensembl, and GENCODE annotations projects.

\ \

References

\

\ Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S,\ Lau C et al.\ \ Targeted discovery of novel human exons by comparative genomics.\ Genome Res. 2007 Dec;17(12):1763-73.\ PMID: 17989246; PMC: PMC2099585\

\ \

\ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\

\ \

\ Zhu J, Sanborn JZ, Diekhans M, Lowe CB, Pringle TH, Haussler D.\ \ Comparative genomics search for losses of long-established genes on the human lineage.\ PLoS Comput Biol. 2007 Dec;3(12):e247.\ PMID: 18085818; PMC: PMC2134963\

\ \ genes 1 baseColorDefault diffCodons\ baseColorUseCds given\ baseColorUseSequence lfExtra\ bigDataUrl /gbdb/hg19/transMap/V5/hg19.rna.transMapV5.bigPsl\ canPack on\ color 0,100,0\ defaultLabelFields orgAbbrev,srcTransId\ group genes\ html transMapRna\ indelDoubleInsert on\ indelQueryInsert on\ labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName\ labelSeparator " "\ longLabel TransMap GenBank RNA Mappings Version 5\ priority 10.004\ searchIndex name,srcTransId,geneName\ shortLabel TransMap RNA\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ superTrack transMapV5 hide\ track transMapRnaV5\ transMapSrcSet rna\ type bigPsl\ visibility hide\ transMapEstV5 TransMap ESTs bigPsl TransMap EST Mappings Version 5 0 10.005 0 100 0 127 177 127 0 0 0

Description

\ \

\ This track contains GenBank spliced EST alignments produced by\ the TransMap cross-species alignment algorithm\ from other vertebrate species in the UCSC Genome Browser.\ For closer evolutionary distances, the alignments are created using\ syntenically filtered BLASTZ alignment chains, resulting in a prediction of the\ orthologous genes in human.\

\ \ \

Display Conventions and Configuration

\ \

\ This track follows the display conventions for \ PSL alignment tracks.

\

\ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare cDNAs against the genomic sequence. For more \ information about this option, click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\ \

Methods

\ \

\

    \
  1. Source transcript alignments were obtained from vertebrate organisms\ in the UCSC Genome Browser Database. BLAT alignments of RefSeq Genes, GenBank \ mRNAs, and GenBank Spliced ESTs to the cognate genome, along with UCSC Genes,\ were used as available.\
  2. For all vertebrate assemblies that had BLASTZ alignment chains and\ nets to the human (hg19) genome, a subset of the alignment chains were\ selected as follows:\
      \
    • For organisms whose branch distance was no more than 0.5\ (as computed by phyloFit, see Conservation track description for details),\ syntenic filtering was used. Reciprocal best nets were used if available;\ otherwise, nets were selected with the netfilter -syn command.\ The chains corresponding to the selected nets were used for mapping.\
    • For more distant species, where the determination of synteny is difficult,\ the full set of chains was used for mapping. This allows for more genes to\ map at the expense of some mapping to paralogous regions. The\ post-alignment filtering step removes some of the duplications.\
    \
  3. The pslMap program was used to do a base-level projection of\ the source transcript alignments via the selected chains\ to the human genome, resulting in pairwise alignments of the source transcripts to\ the genome.\
  4. The resulting alignments were filtered with pslCDnaFilter\ with a global near-best criteria of 0.5% in finished genomes\ (human and mouse) and 1.0% in other genomes. Alignments\ where less than 20% of the transcript mapped were discarded.\
\

\ \

\ To ensure unique identifiers for each alignment, cDNA and gene accessions were\ made unique by appending a suffix for each location in the source genome and\ again for each mapped location in the destination genome. The format is:\ 

\
   accession.version-srcUniq.destUniq\
\ \ Where srcUniq is a number added to make each source alignment unique, and\ destUniq is added to give the subsequent TransMap alignments unique\ identifiers.\

\

\ For example, in the cow genome, there are two alignments of mRNA BC149621.1.\ These are assigned the identifiers BC149621.1-1 and BC149621.1-2.\ When these are mapped to the human genome, BC149621.1-1 maps to a single\ location and is given the identifier BC149621.1-1.1. However, BC149621.1-2\ maps to two locations, resulting in BC149621.1-2.1 and BC149621.1-2.2. Note\ that multiple TransMap mappings are usually the result of tandem duplications, where both\ chains are identified as syntenic.\

\ \

Data Access

\ \

\ The raw data for these tracks can be accessed interactively through the\ Table Browser or the\ Data Integrator.\ For automated analysis, the annotations are stored in\ bigPsl files (containing a\ number of extra columns) and can be downloaded from our\ download server, \ or queried using our API. For more \ information on accessing track data see our \ Track Data Access FAQ.\ The files are associated with these tracks in the following way:\

    \
  • TransMap Ensembl - hg19.ensembl.transMapV4.bigPsl
    • \
  • TransMap RefGene - hg19.refseq.transMapV4.bigPsl
    • \
  • TransMap RNA - hg19.rna.transMapV4.bigPsl
    • \
  • TransMap ESTs - hg19.est.transMapV4.bigPsl
    • \
\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as\ a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, for example:\

\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/transMap/V4/hg19.refseq.transMapV4.bigPsl\ -chrom=chr6 -start=0 -end=1000000 stdout\ \ \

Credits

\ \

\ This track was produced by Mark Diekhans at UCSC from cDNA and EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide and annotations produced by the RefSeq,\ Ensembl, and GENCODE annotations projects.

\ \

References

\

\ Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S,\ Lau C et al.\ \ Targeted discovery of novel human exons by comparative genomics.\ Genome Res. 2007 Dec;17(12):1763-73.\ PMID: 17989246; PMC: PMC2099585\

\ \

\ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\

\ \

\ Zhu J, Sanborn JZ, Diekhans M, Lowe CB, Pringle TH, Haussler D.\ \ Comparative genomics search for losses of long-established genes on the human lineage.\ PLoS Comput Biol. 2007 Dec;3(12):e247.\ PMID: 18085818; PMC: PMC2134963\

\ \ genes 1 baseColorDefault none\ baseColorUseSequence lfExtra\ bigDataUrl /gbdb/hg19/transMap/V5/hg19.est.transMapV5.bigPsl\ canPack on\ color 0,100,0\ defaultLabelFields orgAbbrev,srcTransId\ group genes\ html transMapEst\ indelDoubleInsert on\ indelQueryInsert on\ labelFields commonName,orgAbbrev,srcDb,srcTransId,name\ labelSeparator " "\ longLabel TransMap EST Mappings Version 5\ priority 10.005\ searchIndex name,srcTransId\ shortLabel TransMap ESTs\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ superTrack transMapV5 hide\ track transMapEstV5\ transMapSrcSet est\ type bigPsl\ visibility hide\ chainGeoFor1 Medium ground finch Chain chain geoFor1 Medium ground finch (Apr. 2012 (GeoFor_1.0/geoFor1)) Chained Alignments 3 11 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Medium ground finch (Apr. 2012 (GeoFor_1.0/geoFor1)) Chained Alignments\ otherDb geoFor1\ parent vertebrateChainNetViewchain off\ shortLabel Medium ground finch Chain\ subGroups view=chain species=s013 clade=c01\ track chainGeoFor1\ type chain geoFor1\ chainRheMac10 Rhesus Chain chain rheMac10 Rhesus (Feb. 2019 (Mmul_10/rheMac10)) Chained Alignments 3 11 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Rhesus (Feb. 2019 (Mmul_10/rheMac10)) Chained Alignments\ otherDb rheMac10\ parent primateChainNetViewchain off\ shortLabel Rhesus Chain\ subGroups view=chain species=s021 clade=c01\ track chainRheMac10\ type chain rheMac10\ chainRn4 Rat Chain chain rn4 Rat (Nov. 2004 (Baylor 3.4/rn4)) Chained Alignments 3 11 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Rat (Nov. 2004 (Baylor 3.4/rn4)) Chained Alignments\ otherDb rn4\ parent placentalChainNetViewchain off\ shortLabel Rat Chain\ subGroups view=chain species=s026 clade=c00\ track chainRn4\ type chain rn4\ encTfChipPkENCFF543VGD A549 CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in A549 from ENCODE 3 (ENCFF543VGD) 1 11 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in A549 from ENCODE 3 (ENCFF543VGD)\ parent encTfChipPk off\ shortLabel A549 CTCF 3\ subGroups cellType=A549 factor=CTCF\ track encTfChipPkENCFF543VGD\ wgEncodeHaibRnaSeqA549Dex1nmRawRep2 A549 DEX1nM 2 bigWig 0.122421 1310.829956 A549 DEX 1 hr 1 nM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 11 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 DEX 1 hr 1 nM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel A549 DEX1nM 2\ subGroups view=RawSignal cellType=t2A549 treatment=DEX1NM rep=rep2\ track wgEncodeHaibRnaSeqA549Dex1nmRawRep2\ type bigWig 0.122421 1310.829956\ pgAbtSolid ABTutu pgSnp ABTutu Genome Variants, SOLiD 3 11 0 0 0 127 127 127 0 0 0 varRep 1 longLabel ABTutu Genome Variants, SOLiD\ origAssembly hg18\ parent pgSnpPSU\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel ABTutu\ subGroups view=A_PSU id=AE_ABTutu type=SNP\ track pgAbtSolid\ agilentCghSnpCancer4x180k Ag Can 4x180k bed 9 . Agilent SurePrint G3 Human CGH+SNP Cancer Microarray 4x180K AMADID 030587 0 11 0 0 128 127 127 191 0 0 0 varRep 1 color 0,0,128\ itemRgb on\ longLabel Agilent SurePrint G3 Human CGH+SNP Cancer Microarray 4x180K AMADID 030587\ parent genotypeArrays\ priority 11\ shortLabel Ag Can 4x180k\ track agilentCghSnpCancer4x180k\ type bed 9 .\ wgEncodeHaibMethyl450Ag04449SitesRep1 AG04449 bed 9 AG04449 Methylation 450K Bead Array from ENCODE/HAIB 1 11 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04449 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel AG04449\ subGroups cellType=t3AG04449 obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450Ag04449SitesRep1\ type bed 9\ wgEncodeAwgDnaseUwAg04449UniPk AG04449 DNase narrowPeak AG04449 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 11 0 0 0 127 127 127 1 0 0 regulation 1 longLabel AG04449 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel AG04449 DNase\ subGroups tier=a30 cellType=AG04449\ track wgEncodeAwgDnaseUwAg04449UniPk\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep1LK7_CNhs13341_ctss_fwd AorticSmsToFgf2_00hr30minBr1+ bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep1 (LK7)_CNhs13341_12644-134G7_forward 0 11 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12644-134G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep1%20%28LK7%29.CNhs13341.12644-134G7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep1 (LK7)_CNhs13341_12644-134G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12644-134G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep1LK7_CNhs13341_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12644-134G7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep1LK7_CNhs13341_tpm_fwd AorticSmsToFgf2_00hr30minBr1+ bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep1 (LK7)_CNhs13341_12644-134G7_forward 1 11 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12644-134G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep1%20%28LK7%29.CNhs13341.12644-134G7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep1 (LK7)_CNhs13341_12644-134G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12644-134G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep1LK7_CNhs13341_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12644-134G7\ urlLabel FANTOM5 Details:\ gtexEqtlTissueBrainCortex brainCortex bed 9 + Expression QTL in Brain_Cortex from GTEx V6 0 11 238 238 0 246 246 127 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 238,238,0\ idInUrlSql select gene from gtexEqtlTissueBrainCortex where name='%s'\ longLabel Expression QTL in Brain_Cortex from GTEx V6\ parent gtexEqtlTissue on\ shortLabel brainCortex\ track gtexEqtlTissueBrainCortex\ dhcHumDerDenAncCcdsSpliceFixed CC Splice Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: CCDS Splice 3 11 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: CCDS Splice\ parent dhcHumDerDenAncCcds\ shortLabel CC Splice Fxd\ subGroups view=Ccds subset=CcdsSplice freq=Fixed\ track dhcHumDerDenAncCcdsSpliceFixed\ wgEncodeUwDgfCd20ro01778Sig CD20+ Sig bigWig 1.000000 28523.000000 B cells CD20+ RO01778 DNaseI DGF Per-base Signal from ENCODE/UW 2 11 0 0 0 127 127 127 0 0 0 regulation 0 longLabel B cells CD20+ RO01778 DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel CD20+ Sig\ subGroups view=Signal cellType=t2BCELLSCD20RO01778 treatment=aNONE rep=rep1\ track wgEncodeUwDgfCd20ro01778Sig\ type bigWig 1.000000 28523.000000\ dhcVcfHGDP01307 Dai Variants vcfTabix Dai Individual (HGDP01307) Variant Calls 0 11 0 0 0 127 127 127 0 0 0 denisova 1 longLabel Dai Individual (HGDP01307) Variant Calls\ parent dhcVcfModern\ priority 11\ shortLabel Dai Variants\ track dhcVcfHGDP01307\ vcfDoMaf off\ wgEncodeProtGenoSuper ENC ProtGeno ENCODE Proteogenomics 0 11 0 0 0 127 127 127 0 0 0

Description

\

This super track shows proteogenomic mappings of peptides from ENCODE cell\ types mapped to the human genome which represent fragments of translated proteins \ from the respective cell lines. Proteogenomic methods differ from conventional \ mass-spec proteomic methods. Conventional mass-spec proteomic methods identify \ peptides by comparing them to peptides produced from known proteins. In contrast, \ proteogenomic methods compare the peptides to all peptides that might theoretically \ be produced by the six possible translation frames of the genome (three on the \ forward strand plus three on the reverse strand) to identify the genomic region \ from which the peptides were produced. Study of proteogenomic data offers insights \ on numerous regulatory mechanisms, including: translation, pre-mRNA splicing and \ transcript diversity, nonsense-mediated decay, and transcription of novel protein-coding \ genes. Two tracks UNC/BSU ProtGenc and UNC/BSU ProtGeno that differ in database \ search scheme are presented here. UNC/BSU ProtGenc are the combined results from \ searching against Hg19 and GENCODE of peptides of both regular and post-translational \ modifications. UNC/BSU ProtGeno only contains the database search results of Hg19 \ of regular peptides.
\

\ \

Display Conventions and Configuration

\

\ Most ENCODE tracks contain multiple subtracks corresponding to\ multiple experimental conditions. If a track contains a large\ number of subtracks, only some subtracks will be displayed by default.\ The user can select which subtracks are displayed via the display\ controls\ on the track details pages.\

\ \

Credits

\

\ These data were generated and analyzed as part of the ENCODE project, a\ genome-wide consortium project with the aim of cataloging all\ functional elements in the human genome. This effort includes\ collecting a variety of data across related experimental conditions to\ facilitate integrative analysis. Consequently, additional ENCODE tracks\ may contain data that is relevant to the data in these tracks.\

\ \

References

\ \

\ Giddings MC, Shah AA, Gesteland R, Moore B.\ \ Genome-based peptide fingerprint scanning.\ Proc Natl Acad Sci U S A. 2003 Jan 7;100(1):20-5.\

\ \

\ Jaffe JD, Berg HC, Church GM.\ \ Proteogenomic mapping as a complementary method to perform genome annotation.\ Proteomics. 2004 Jan;4(1):59-77.\

\ \ \

Data Release Policy

\

\ Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset\ until nine months following the release of the dataset. This date is\ listed in the Restricted Until \ column on the track configuration page and the download page. The full \ data release policy for ENCODE is available \ here.\

\ expression 0 group expression\ longLabel ENCODE Proteogenomics\ priority 11\ shortLabel ENC ProtGeno\ superTrack on\ track wgEncodeProtGenoSuper\ filterABQD GIAB allele imbalance bigBed 3 NIST Genome-in-a-bottle: calls with abnormal allele balance 1 11 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/bbi/problematic/filterABQD.bb\ longLabel NIST Genome-in-a-bottle: calls with abnormal allele balance\ parent problematic\ priority 11\ shortLabel GIAB allele imbalance\ track filterABQD\ type bigBed 3\ visibility dense\ wgEncodeAwgTfbsSydhGm12878Chd2ab68301IggmusUniPk GM12878 CHD2 narrowPeak GM12878 TFBS Uniform Peaks of CHD2_(AB68301) from ENCODE/Stanford/Analysis 1 11 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of CHD2_(AB68301) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 CHD2\ subGroups tier=a10 cellType=a10GM12878 factor=CHD2 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Chd2ab68301IggmusUniPk\ wgEncodeBroadHistoneGm12878H3k04me3StdPkV2 GM12878 H3K4m3 broadPeak GM12878 H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 11 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg18\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel GM12878 H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H3k04me3StdPkV2\ type broadPeak\ wgEncodeSunyRipSeqGm12878T7tagAlnRep1 GM12878 T7Tag 1 bam GM12878 T7Tag RIP-seq Alignments Rep 1 from ENCODE/SUNY 0 11 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 T7Tag RIP-seq Alignments Rep 1 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewAlignments off\ shortLabel GM12878 T7Tag 1\ subGroups view=Alignments factor=T7Tag cellType=t1GM12878 rep=rep1\ track wgEncodeSunyRipSeqGm12878T7tagAlnRep1\ type bam\ wgEncodeOpenChromSynthGm18507Pk GM18507 Syn Pk bed 9 + GM18507 DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom 0 11 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM18507 DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom\ origAssembly hg19\ parent wgEncodeOpenChromSynth off\ shortLabel GM18507 Syn Pk\ subGroups cellType=t3GM18507 treatment=aNone\ track wgEncodeOpenChromSynthGm18507Pk\ type bed 9 +\ wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep2V2 GM78 1x75D A 2 bam GM12878 single read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 11 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 single read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel GM78 1x75D A 2\ subGroups view=Aligns cellType=t1GM12878 insertLength=ilNa readType=r1x75D rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep2V2\ type bam\ wgEncodeHaibTfbsGm12878BatfPcr1xPkRep2 GM78 BATF PCR1 2 broadPeak GM12878 BATF PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 11 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 BATF PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 BATF PCR1 2\ subGroups view=Peaks factor=BATF cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878BatfPcr1xPkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqGm12878CellPapContigs GM78 cel pA+ C bed 6 + GM12878 whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 11 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs on\ shortLabel GM78 cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1GM12878 localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqGm12878CellPapContigs\ type bed 6 +\ wgEncodeSydhTfbsGm12878Chd2ab68301IggmusPk GM78 CHD2 IgM narrowPeak GM12878 CHD2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 11 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 CHD2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks on\ shortLabel GM78 CHD2 IgM\ subGroups view=Peaks factor=CHD2 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Chd2ab68301IggmusPk\ type narrowPeak\ wgEncodeRikenCageGm12878CytosolPapAlnRep2 GM78 cyto pA+ A 2 bam GM12878 cytosol polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 11 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel GM78 cyto pA+ A 2\ subGroups view=Alignments cellType=t1GM12878 localization=cytosol rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageGm12878CytosolPapAlnRep2\ type bam\ wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapContigs GM78 cyto TAP C bed 6 GM12878 TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL 2 11 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel GM78 cyto TAP C\ subGroups view=Contigs cellType=t1GM12878 localization=CYTOSOL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapContigs\ type bed 6\ wgEncodeUwHistoneGm12878H3k27me3StdPkRep2 GM78 H3K27M3 Pk 2 narrowPeak GM12878 H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 11 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks on\ shortLabel GM78 H3K27M3 Pk 2\ subGroups view=Peaks factor=H3K27ME3 cellType=t1GM12878 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm12878H3k27me3StdPkRep2\ type narrowPeak\ wgEncodeOpenChromChipH1hescCmycPk H1-hESC cMyc Pk narrowPeak H1-hESC cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 11 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks\ shortLabel H1-hESC cMyc Pk\ subGroups treatment=AANONE view=Peaks factor=CMYC cellType=t1H1HESC\ track wgEncodeOpenChromChipH1hescCmycPk\ type narrowPeak\ wgEncodeGisRnaPetH1hescCellPapPlusRawRep1 H1ES cell pA+ + 1 bigWig 1.000000 826778.000000 H1-hESC whole cell polyA+ clone-free RNA PET Plus Signal Rep 1 from ENCODE/GIS 2 11 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA+ clone-free RNA PET Plus Signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig on\ shortLabel H1ES cell pA+ + 1\ subGroups view=v2PlusRawSignal cellType=aH1HESC cloned=Free localization=cell rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetH1hescCellPapPlusRawRep1\ type bigWig 1.000000 826778.000000\ wgEncodeFsuRepliChipH7esWaveSignalRep2 H7-hESC 2 bigWig -1.823388 1.942219 H7-hESC Repli-chip Wavelet-smoothed Signal Rep 2 from ENCODE/FSU 0 11 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC Repli-chip Wavelet-smoothed Signal Rep 2 from ENCODE/FSU\ parent wgEncodeFsuRepliChip off\ shortLabel H7-hESC 2\ subGroups view=WaveSignal cellType=t3H7HESC rep=rep2\ track wgEncodeFsuRepliChipH7esWaveSignalRep2\ type bigWig -1.823388 1.942219\ hapmapSnpsYRI HapMap SNPs YRI bed 6 + HapMap SNPs from the YRI Population (Yoruba in Ibadan, Nigeria) 0 11 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HapMap SNPs from the YRI Population (Yoruba in Ibadan, Nigeria)\ parent hapmapSnps\ priority 11\ shortLabel HapMap SNPs YRI\ track hapmapSnpsYRI\ wgEncodeAwgSegmentationCombinedHelas3 HeLa-S3 Combined bed 9 . HeLa-S3 Genome Segmentation by Combined Segway+ChromHMM from ENCODE/Analysis 0 11 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HeLa-S3 Genome Segmentation by Combined Segway+ChromHMM from ENCODE/Analysis\ parent wgEncodeAwgSegmentation off\ shortLabel HeLa-S3 Combined\ subGroups tier=t2 cellType=t2HELAS3 method=Combined\ track wgEncodeAwgSegmentationCombinedHelas3\ type bed 9 .\ wgEncodeHaibMethylRrbsHepg2DukeSitesRep1 HepG2 1 bed 9 + HepG2 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 11 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs on\ shortLabel HepG2 1\ subGroups cellType=t2HEPG2 obtainedBy=DUKE treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHepg2DukeSitesRep1\ type bed 9 +\ decodeHotSpotMale Hot Spot Male bed 4 deCODE recombination map, male >= 10.0 1 11 0 81 200 127 168 227 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 1 color 0,81,200\ configurable on\ longLabel deCODE recombination map, male >= 10.0\ parent hotView\ priority 11\ shortLabel Hot Spot Male\ subGroups view=hot\ track decodeHotSpotMale\ wgEncodeUwAffyExonArrayHuvecSimpleSignalRep2 HUVEC 2 broadPeak HUVEC Exon array Signal Rep 2 from ENCODE/UW 0 11 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HUVEC 2\ subGroups cellType=t2HUVEC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHuvecSimpleSignalRep2\ type broadPeak\ wgEncodeUncBsuProtGencK562CellIngelpepMapGcFt K562 Ce bigBed 12 K562 In-gel ProtG GENCODE11 Hg19 Mapping from ENCODE/UNC/BSU 2 11 46 0 184 150 127 219 1 0 0 expression 1 color 46,0,184\ longLabel K562 In-gel ProtG GENCODE11 Hg19 Mapping from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtGencViewpepMapGcFt\ shortLabel K562 Ce\ subGroups view=pepMapGcFt cellType=K562 localization=CELL protocol=INGEL\ track wgEncodeUncBsuProtGencK562CellIngelpepMapGcFt\ type bigBed 12\ wgEncodeSunyAlbanyGeneStK562Celf1RbpAssocRnaV2 K562 CELF1 broadPeak K562 CELF1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 11 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 CELF1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt\ shortLabel K562 CELF1\ subGroups cellType=t1K562 factor=CELF1\ track wgEncodeSunyAlbanyGeneStK562Celf1RbpAssocRnaV2\ type broadPeak\ wgEncodeUwTfbsK562CtcfStdHotspotsRep2 K562 CTCF Ht 2 broadPeak K562 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 11 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot on\ shortLabel K562 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t1K562 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsK562CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeGisRnaSeqK562CytosolPapPlusRawRep1 K562 cyto pA+ + 1 bigWig 1.000000 169047.000000 K562 cytosol polyA+ RNA-seq Plus raw signal rep 2 from ENCODE/GIS 2 11 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA+ RNA-seq Plus raw signal rep 2 from ENCODE/GIS\ parent wgEncodeGisRnaSeqViewPlusRawSignal on\ shortLabel K562 cyto pA+ + 1\ subGroups view=PlusRawSignal cellType=t1K562 rnaExtract=longPolyA rep=rep1 localization=cytosol\ track wgEncodeGisRnaSeqK562CytosolPapPlusRawRep1\ type bigWig 1.000000 169047.000000\ wgEncodeUwRepliSeqK562G1PctSignalRep1 K562 G1 1 bigWig 1.000000 100.000000 K562 G1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 11 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 G1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel K562 G1 1\ subGroups view=v1PctSignal cellType=t1K562 phase=p1G1 rep=rep1\ track wgEncodeUwRepliSeqK562G1PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseK562G2mphaseSig K562 G2-M DS bigWig 0.000000 0.880900 K562 G2-M phase DNaseI HS Density Signal from ENCODE/Duke 2 11 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 G2-M phase DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel K562 G2-M DS\ subGroups view=SIG cellType=t1K562 treatment=G2MPHASE\ track wgEncodeOpenChromDnaseK562G2mphaseSig\ type bigWig 0.000000 0.880900\ wgEncodeDukeAffyExonK562NabutSimpleSignalRep4 K562 Nabut 4 bigBed 6 + K562 NaBut Exon array Signal Rep 4 from ENCODE/Duke 0 11 46 0 184 150 127 219 1 0 0 expression 1 color 46,0,184\ longLabel K562 NaBut Exon array Signal Rep 4 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel K562 Nabut 4\ subGroups cellType=t1K562 treatment=NABUT rep=rep4\ track wgEncodeDukeAffyExonK562NabutSimpleSignalRep4\ type bigBed 6 +\ wgEncodeUchicagoTfbsK562Enr4a1ControlPk K562 NR4A1/GFP Pk narrowPeak K562 NR4A1 GFP-tag TFBS Peaks from ENCODE/UChicago 3 11 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 NR4A1 GFP-tag TFBS Peaks from ENCODE/UChicago\ parent wgEncodeUchicagoTfbsPeaks\ shortLabel K562 NR4A1/GFP Pk\ subGroups view=Peaks factor=NR4A1 cellType=K562 control=ControlNR4A1 rep=repPOOLED\ track wgEncodeUchicagoTfbsK562Enr4a1ControlPk\ type narrowPeak\ wgEncodeAffyRnaChipFiltTransfragsK562NucleusLongnonpolya K562 nucl pA- broadPeak K562 nucleus polyA- Microarray Transfrags from ENCODE Affy/CSHL 3 11 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleus polyA- Microarray Transfrags from ENCODE Affy/CSHL\ parent wgEncodeAffyRnaChipViewFiltTransfrags\ shortLabel K562 nucl pA-\ subGroups view=FiltTransfrags cellType=t1K562 localization=dNUCLEUS rnaExtract=longNonPolyA\ track wgEncodeAffyRnaChipFiltTransfragsK562NucleusLongnonpolya\ type broadPeak\ wgEncodeUwDnaseK562PkRep1 K562 Pk 1 narrowPeak K562 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 11 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks\ shortLabel K562 Pk 1\ subGroups view=Peaks cellType=t1K562 rep=rep1 treatment=None\ track wgEncodeUwDnaseK562PkRep1\ type narrowPeak\ wgEncodeOpenChromFaireK562OhureaSig K562 urea FAIR DS bigWig 0.000000 0.142500 K562 Hydroxyurea FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 11 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 Hydroxyurea FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel K562 urea FAIR DS\ subGroups view=SIG cellType=t1K562 treatment=HYDROUREA\ track wgEncodeOpenChromFaireK562OhureaSig\ type bigWig 0.000000 0.142500\ lincRNAsCTKidney Kidney bed 5 + lincRNAs from kidney 1 11 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from kidney\ parent lincRNAsAllCellType on\ shortLabel Kidney\ subGroups view=lincRNAsRefseqExp tissueType=kidney\ track lincRNAsCTKidney\ wgEncodeHaibGenotypeMcf7RegionsRep1 MCF-7 1 bed 9 + MCF-7 Copy number variants Replicate 1 from ENCODE/HAIB 0 11 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MCF-7 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel MCF-7 1\ subGroups cellType=t2MCF7 obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeMcf7RegionsRep1\ type bed 9 +\ wgEncodeSydhHistoneMcf7H3k09me3UcdSig MCF-7 H3K9me3 bigWig 1.000000 41149.000000 MCF-7 H3K9me3 Histone Modifications by ChIP-seq Signal from ENCODE/SYDH 2 11 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 H3K9me3 Histone Modifications by ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel MCF-7 H3K9me3\ subGroups view=Signal factor=H3K09ME3 cellType=bMCF7 control=UCD treatment=NONE\ track wgEncodeSydhHistoneMcf7H3k09me3UcdSig\ type bigWig 1.000000 41149.000000\ wgEncodeGisChiaPetMcf7CtcfInteractionsRep2 MCF7 CTCF Int 2 bed 12 MCF-7 CTCF ChIA-PET Interactions Rep 2 from ENCODE/GIS-Ruan 2 11 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 CTCF ChIA-PET Interactions Rep 2 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetInteractions off\ shortLabel MCF7 CTCF Int 2\ subGroups view=Interactions factor=CTCF cellType=t2MCF7 rep=rep2\ track wgEncodeGisChiaPetMcf7CtcfInteractionsRep2\ type bed 12\ uMassBrainHistoneSignalS8NeuP14yrsM NeuN+ 14yrs M bigWig UMMS Brain Histone H3K4me3 (NeuN+ D8) Gender-male Age-14 2 11 41 158 41 148 206 148 0 0 0 regulation 0 color 41,158,41\ longLabel UMMS Brain Histone H3K4me3 (NeuN+ D8) Gender-male Age-14\ parent uMassBrainHistoneViewSignal\ shortLabel NeuN+ 14yrs M\ subGroups view=Signal donor=i_8 cellType=norm sex=male age=b_young\ track uMassBrainHistoneSignalS8NeuP14yrsM\ type bigWig\ nexterarapidcapture_expandexome_targetedregions Nextera Rapid Exp. T bigBed 4 Illumina - Nextera Rapid Capture Expanded Exome Target Regions 0 11 22 62 164 138 158 209 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/nexterarapidcapture_expandedexome_targetedregions.bb\ color 22,62,164\ longLabel Illumina - Nextera Rapid Capture Expanded Exome Target Regions\ parent exomeProbesets off\ shortLabel Nextera Rapid Exp. T\ track nexterarapidcapture_expandexome_targetedregions\ type bigBed 4\ unipOther Other Annot. bigBed 12 + UniProt Other Annotations 1 11 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg19/uniprot/unipOther.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ longLabel UniProt Other Annotations\ parent uniprot\ priority 11\ shortLabel Other Annot.\ track unipOther\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#family_and_domains" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility dense\ polyASeqSitesMaqcUhr1Fwd PolyA-Seq MaqcUhr1 bigWig 0.200000 25178.449219 Poly(A)-tail sequencing of MAQC UHR (replicate 1) from Merck (Fwd strand) 2 11 153 51 51 204 153 153 0 0 0 rna 0 color 153,51,51\ longLabel Poly(A)-tail sequencing of MAQC UHR (replicate 1) from Merck (Fwd strand)\ parent polyASeqSitesSignalView\ shortLabel PolyA-Seq MaqcUhr1\ subGroups view=Signal tissType=MaqcUhr1 strand=fwd\ track polyASeqSitesMaqcUhr1Fwd\ type bigWig 0.200000 25178.449219\ burgeRnaSeqGemMapperAlignLiver RNA-seq Liver bed 12 Burge Lab RNA-seq 32mer Reads from Liver 1 11 12 12 120 133 133 187 0 0 0 expression 1 longLabel Burge Lab RNA-seq 32mer Reads from Liver\ parent burgeRnaSeqGemMapperAlignViewAlignments off\ shortLabel RNA-seq Liver\ subGroups view=Alignments tissueType=liver\ track burgeRnaSeqGemMapperAlignLiver\ sibTxGraph SIB Alt-Splicing altGraphX Alternative Splicing Graph from Swiss Institute of Bioinformatics 0 11 0 0 0 127 127 127 0 0 0 http://ccg.vital-it.ch/cgi-bin/tromer/tromergraph2draw.pl?db=hg19&species=H.+sapiens&tromer=$$

Description

\

\ This track shows the graphs constructed by analyzing experimental RNA\ transcripts and serves as basis for the predicted alternative splicing\ transcripts shown in the SIB Genes track. The blocks represent exons; lines\ indicate introns. The graphical display is drawn such that no exons\ overlap, making alternative events easier to view when the track is in full\ display mode and the resolution is set to approximately gene-level.

\

Further information on the graphs can be found on the\ Transcriptome \ Web interface.

\ \

Methods

\

\ The splicing graphs were generated using a multi-step pipeline: \

    \
  1. RefSeq and GenBank RNAs and ESTs are aligned to the genome with\ SIBsim4, keeping \ only the best alignments for each RNA.\
  2. Alignments are broken up at non-intronic gaps, with small isolated \ fragments thrown out.\
  3. A splicing graph is created for each set of overlapping alignments. This\ graph has an edge for each exon or intron, and a vertex for each splice site,\ start, and end. Each RNA that contributes to an edge is kept as evidence for\ that edge.\
  4. Graphs consisting solely of unspliced ESTs are discarded.\

\ \

Credits

\

\ The SIB Alternative Splicing Graphs track was produced on the Vital-IT high-performance \ computing platform\ using a computational pipeline developed by Christian Iseli with help from\ colleagues at the Ludwig \ Institute for Cancer\ Research and the Swiss \ Institute of Bioinformatics. It is based on data from NCBI RefSeq and GenBank/EMBL. Our\ thanks to the people running these databases and to the scientists worldwide\ who have made contributions to them.

\ rna 1 group rna\ idInUrlSql select name from sibTxGraph where id=%s\ longLabel Alternative Splicing Graph from Swiss Institute of Bioinformatics\ priority 11\ shortLabel SIB Alt-Splicing\ track sibTxGraph\ type altGraphX\ url http://ccg.vital-it.ch/cgi-bin/tromer/tromergraph2draw.pl?db=hg19&species=H.+sapiens&tromer=$$\ urlLabel SIB link:\ visibility hide\ unipStruct Structure bigBed 12 + UniProt Protein Primary/Secondary Structure Annotations 0 11 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg19/uniprot/unipStruct.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ group genes\ longLabel UniProt Protein Primary/Secondary Structure Annotations\ parent uniprot\ priority 11\ shortLabel Structure\ track unipStruct\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#structure" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility hide\ iscaUncertain Uncertain gvf ClinGen CNVs: Uncertain 3 11 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/?term=$$ phenDis 1 longLabel ClinGen CNVs: Uncertain\ parent iscaViewDetail off\ shortLabel Uncertain\ subGroups view=cnv class=unc level=sub\ track iscaUncertain\ netRn4 rn4 Net netAlign rn4 chainRn4 Rat (Nov. 2004 (Baylor 3.4/rn4)) Alignment Net 1 12 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Rat (Nov. 2004 (Baylor 3.4/rn4)) Alignment Net\ otherDb rn4\ parent placentalChainNetViewnet off\ shortLabel rn4 Net\ subGroups view=net species=s026 clade=c00\ track netRn4\ type netAlign rn4 chainRn4\ netGeoFor1 Medium ground finch Net netAlign geoFor1 chainGeoFor1 Medium ground finch (Apr. 2012 (GeoFor_1.0/geoFor1)) Alignment Net 1 12 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Medium ground finch (Apr. 2012 (GeoFor_1.0/geoFor1)) Alignment Net\ otherDb geoFor1\ parent vertebrateChainNetViewnet on\ shortLabel Medium ground finch Net\ subGroups view=net species=s013 clade=c01\ track netGeoFor1\ type netAlign geoFor1 chainGeoFor1\ netRheMac10 Rhesus Net netAlign rheMac10 chainRheMac10 Rhesus (Feb. 2019 (Mmul_10/rheMac10)) Alignment Net 1 12 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Rhesus (Feb. 2019 (Mmul_10/rheMac10)) Alignment Net\ otherDb rheMac10\ parent primateChainNetViewnet off\ shortLabel Rhesus Net\ subGroups view=net species=s021 clade=c01\ track netRheMac10\ type netAlign rheMac10 chainRheMac10\ wgEncodeHaibRnaSeqA549Dex1nmAlnRep2 A549 DEX1nM 2 bam A549 DEX 1 hr 1 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 12 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 DEX 1 hr 1 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel A549 DEX1nM 2\ subGroups view=Alignments cellType=t2A549 treatment=DEX1NM rep=rep2\ track wgEncodeHaibRnaSeqA549Dex1nmAlnRep2\ type bam\ encTfChipPkENCFF071ZMT A549 EHMT2 narrowPeak Transcription Factor ChIP-seq Peaks of EHMT2 in A549 from ENCODE 3 (ENCFF071ZMT) 1 12 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EHMT2 in A549 from ENCODE 3 (ENCFF071ZMT)\ parent encTfChipPk off\ shortLabel A549 EHMT2\ subGroups cellType=A549 factor=EHMT2\ track encTfChipPkENCFF071ZMT\ pgAbt454 ABTutu exome pgSnp ABTutu Genome Variants, 454 exome 3 12 0 0 0 127 127 127 0 0 0 varRep 1 longLabel ABTutu Genome Variants, 454 exome\ origAssembly hg18\ parent pgSnpPSU\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel ABTutu exome\ subGroups view=A_PSU id=AE_ABTutu type=SNP\ track pgAbt454\ agilentCghSnp4x180k Ag SNP 4x180k bed 9 . Agilent SurePrint G3 Human CGH+SNP Microarray 4x180K AMADID 029830 0 12 0 0 128 127 127 191 0 0 0 varRep 1 color 0,0,128\ itemRgb on\ longLabel Agilent SurePrint G3 Human CGH+SNP Microarray 4x180K AMADID 029830\ parent genotypeArrays\ priority 12\ shortLabel Ag SNP 4x180k\ track agilentCghSnp4x180k\ type bed 9 .\ wgEncodeHaibMethyl450Ag04450SitesRep1 AG04450 bed 9 AG04450 Methylation 450K Bead Array from ENCODE/HAIB 1 12 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel AG04450\ subGroups cellType=t3AG04450 obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450Ag04450SitesRep1\ type bed 9\ wgEncodeAwgDnaseUwAg04450UniPk AG04450 DNase narrowPeak AG04450 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 12 0 0 0 127 127 127 1 0 0 regulation 1 longLabel AG04450 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel AG04450 DNase\ subGroups tier=a30 cellType=AG04450\ track wgEncodeAwgDnaseUwAg04450UniPk\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep1LK7_CNhs13341_ctss_rev AorticSmsToFgf2_00hr30minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep1 (LK7)_CNhs13341_12644-134G7_reverse 0 12 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12644-134G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep1%20%28LK7%29.CNhs13341.12644-134G7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep1 (LK7)_CNhs13341_12644-134G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12644-134G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep1LK7_CNhs13341_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12644-134G7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep1LK7_CNhs13341_tpm_rev AorticSmsToFgf2_00hr30minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep1 (LK7)_CNhs13341_12644-134G7_reverse 1 12 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12644-134G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep1%20%28LK7%29.CNhs13341.12644-134G7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep1 (LK7)_CNhs13341_12644-134G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12644-134G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep1LK7_CNhs13341_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12644-134G7\ urlLabel FANTOM5 Details:\ gtexEqtlTissueBrainFrontCortex brainFrontCortex bed 9 + Expression QTL in Brain_Frontal_Cortex_BA9 from GTEx V6 0 12 238 238 0 246 246 127 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 238,238,0\ idInUrlSql select gene from gtexEqtlTissueBrainFrontCortex where name='%s'\ longLabel Expression QTL in Brain_Frontal_Cortex_BA9 from GTEx V6\ parent gtexEqtlTissue on\ shortLabel brainFrontCortex\ track gtexEqtlTissueBrainFrontCortex\ dhcHumDerDenAncCcdsSpliceFixedDbSnp CC Splice FxS bigBed 4 + Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: CCDS Splice 3 12 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: CCDS Splice\ parent dhcHumDerDenAncCcds\ shortLabel CC Splice FxS\ subGroups view=Ccds subset=CcdsSplice freq=FixedDbSnp\ track dhcHumDerDenAncCcdsSpliceFixedDbSnp\ wgEncodeUwDgfCd20ro01778Raw CD20+ Raw bigWig 1.000000 112816.000000 B cells CD20+ RO01778 DNaseI DGF Raw Signal from ENCODE/UW 0 12 0 0 0 127 127 127 0 0 0 regulation 0 longLabel B cells CD20+ RO01778 DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel CD20+ Raw\ subGroups view=zRaw cellType=t2BCELLSCD20RO01778 treatment=aNONE rep=rep1\ track wgEncodeUwDgfCd20ro01778Raw\ type bigWig 1.000000 112816.000000\ wgEncodeRnaSeqSuper ENC RNA-seq ENCODE RNA-seq 0 12 0 0 0 127 127 127 0 0 0

Description

\

\ RNA sequencing, or RNA-seq, is a method for mapping and quantifying the\ total amount of RNA transcripts in a cell at any given time, otherwise known as\ the transcriptome, for any organism that has a genomic DNA sequence\ assembly. Compared to microarrays that detect and quantify transcripts by\ hybridization against known sequences, RNA-seq directly sequences\ transcripts and is especially\ well-suited for de novo\ discovery of RNA splicing patterns and for determining unequivocally\ the presence or absence of lower abundance class RNAs.\ RNA-seq is performed by reverse-transcribing an RNA sample into\ cDNA followed by high throughput DNA sequencing. Most data is produced\ in the format of either single reads or paired-end reads.\ In the format of single reads each sequence read comes from one end\ of a randomly primed cDNA molecule (and represent one end of one cDNA\ segment), while paired-end reads are obtained as pairs\ from both ends of a randomly primed cDNA (and represent two opposite\ ends of one cDNA segment). The resulting sequence reads are then\ informatically mapped onto the genome sequence (Alignments). \ The current mappers (TopHat and STAR) have the ability to map\ reads to annotated and unannotated genomic regions.\ Reads mapped to annotated or novel RNA splice junctions are\ (Splice\ Sites). Earlier versions of this software did not map \ reads to unannotated genomic regions.\

\

\ Some RNA-seq protocols do not specify the coding strand. As a result,\ there can be ambiguity at loci where both strands are transcribed.
\

\

Display Conventions

\ These tracks are multi-view composite tracks that contain multiple\ data types (views). Each view within a track\ has separate display controls, as described here.\ Most ENCODE tracks contain multiple subtracks, corresponding to\ multiple experimental conditions. If a track contains a large\ number of subtracks, only some subtracks will be displayed by default.\ The user can select which subtracks are displayed via the display controls\ on the track details pages.\

Credits
\

\ These data were generated and analyzed as part of the ENCODE project, a\ genome-wide consortium project with the aim of cataloging all\ functional elements in the human genome. This effort includes\ collecting a variety of data across related experimental conditions to\ facilitate integrative analysis. Consequently, additional ENCODE tracks may \ contain data that is relevant to the data in these tracks. \

References

\ Morozova O, Hirst M, Marra MA. Applications of new sequencing\ technologies for transcriptome analysis. Annual Review of\ Genomics and Human Genetics. 2009;10:135-51.
\
\ Metzker ML. Sequencing\ technologies - the next generation. Nature Reviews: Genetics. 2010\ Jan;11(1):31-46
\

Data Release Policy

\ Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset\ until nine months following the release of the dataset. This date is\ listed in the Restricted Until column on the track configuration page\ and the download page. The full data release policy for ENCODE is\ available here.
\
\ expression 0 group expression\ longLabel ENCODE RNA-seq\ priority 12\ shortLabel ENC RNA-seq\ superTrack on\ track wgEncodeRnaSeqSuper\ filterAlign GIAB align problem bigBed 3 NIST Genome-in-a-bottle: calls with evidence of local alignment problems like clipped reads 1 12 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/bbi/problematic/filterAlign.bb\ longLabel NIST Genome-in-a-bottle: calls with evidence of local alignment problems like clipped reads\ parent problematic\ priority 12\ shortLabel GIAB align problem\ track filterAlign\ type bigBed 3\ visibility dense\ wgEncodeAwgTfbsBroadGm12878CtcfUniPk GM12878 CTCF b narrowPeak GM12878 TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis 1 12 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 CTCF b\ subGroups tier=a10 cellType=a10GM12878 factor=CTCF lab=Broad\ track wgEncodeAwgTfbsBroadGm12878CtcfUniPk\ wgEncodeBroadHistoneGm12878H3k04me3StdSigV2 GM12878 H3K4m3 bigWig 0.040000 44948.160156 GM12878 H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 12 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg18\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel GM12878 H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H3k04me3StdSigV2\ type bigWig 0.040000 44948.160156\ wgEncodeSunyRipSeqGm12878T7tagAlnRep2 GM12878 T7Tag 2 bam GM12878 T7Tag RIP-seq Alignments Rep 2 from ENCODE/SUNY 0 12 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 T7Tag RIP-seq Alignments Rep 2 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewAlignments off\ shortLabel GM12878 T7Tag 2\ subGroups view=Alignments factor=T7Tag cellType=t1GM12878 rep=rep2\ track wgEncodeSunyRipSeqGm12878T7tagAlnRep2\ type bam\ wgEncodeOpenChromSynthGm19239Pk GM19239 Syn Pk bed 9 + GM19239 DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom 0 12 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM19239 DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom\ origAssembly hg19\ parent wgEncodeOpenChromSynth off\ shortLabel GM19239 Syn Pk\ subGroups cellType=t3GM19239 treatment=aNone\ track wgEncodeOpenChromSynthGm19239Pk\ type bed 9 +\ wgEncodeCaltechRnaSeqGm12878R1x75dTh1014UMinusRawRep1V4 GM78 1x75D - 1 bigWig -39367.699219 -0.020000 GM12878 single read RNA-seq Minus Signal Rep 1 from ENCODE/Caltech 2 12 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 single read RNA-seq Minus Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewMinusSignal\ shortLabel GM78 1x75D - 1\ subGroups view=MinusSignal cellType=t1GM12878 readType=r1x75D insertLength=ilNa rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12878R1x75dTh1014UMinusRawRep1V4\ type bigWig -39367.699219 -0.020000\ wgEncodeHaibTfbsGm12878BatfPcr1xRawRep2 GM78 BATF PCR1 2 bigWig 0.177558 118.165001 GM12878 BATF PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 12 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 BATF PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 BATF PCR1 2\ subGroups view=RawSignal factor=BATF cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878BatfPcr1xRawRep2\ type bigWig 0.177558 118.165001\ wgEncodeCshlLongRnaSeqGm12878CellPapJunctions GM78 cel pA+ J bed 6 + GM12878 whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 12 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel GM78 cel pA+ J\ subGroups view=Junctions cellType=t1GM12878 localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqGm12878CellPapJunctions\ type bed 6 +\ wgEncodeSydhTfbsGm12878Chd2ab68301IggmusSig GM78 CHD2 IgM bigWig 1.000000 8305.000000 GM12878 CHD2 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 12 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 CHD2 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal on\ shortLabel GM78 CHD2 IgM\ subGroups view=Signal factor=CHD2 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Chd2ab68301IggmusSig\ type bigWig 1.000000 8305.000000\ wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapMinusRawRep1 GM78 cyto TAP - 1 bigWig 1.000000 5676517.000000 GM12878 TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 12 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel GM78 cyto TAP - 1\ subGroups view=MinusSignal cellType=t1GM12878 localization=CYTOSOL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapMinusRawRep1\ type bigWig 1.000000 5676517.000000\ wgEncodeUwHistoneGm12878H3k27me3StdRawRep2 GM78 H3K27M3 Sg 2 bigWig 1.000000 4386.000000 GM12878 H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 12 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig on\ shortLabel GM78 H3K27M3 Sg 2\ subGroups view=zRSig factor=H3K27ME3 cellType=t1GM12878 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm12878H3k27me3StdRawRep2\ type bigWig 1.000000 4386.000000\ wgEncodeRikenCageGm12878NucleolusTotalTssHmmV2 GM78 nlos tot bed 6 GM12878 nucleolus total CAGE TSS HMM from ENCODE/RIKEN 3 12 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleolus total CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel GM78 nlos tot\ subGroups view=TssHmm cellType=t1GM12878 localization=nucleolus rnaExtract=total rep=Pooled rank=rankP\ track wgEncodeRikenCageGm12878NucleolusTotalTssHmmV2\ type bed 6\ wgEncodeOpenChromChipH1hescCmycSig H1-hESC cMyc DS bigWig 0.000000 1.701300 H1-hESC cMyc TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 12 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC cMyc TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal\ shortLabel H1-hESC cMyc DS\ subGroups treatment=AANONE view=SIG factor=CMYC cellType=t1H1HESC\ track wgEncodeOpenChromChipH1hescCmycSig\ type bigWig 0.000000 1.701300\ wgEncodeGisRnaPetH1hescCellPapAlnRep1 H1ES cell pA+ A 1 bam H1-hESC whole cell polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS 0 12 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC whole cell polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel H1ES cell pA+ A 1\ subGroups view=v3Alignments cellType=aH1HESC cloned=Free localization=cell rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetH1hescCellPapAlnRep1\ type bam\ wgEncodeFsuRepliChipH9esWaveSignalRep1 H9ES 1 bigWig -2.235592 1.987216 H9ES Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU 0 12 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H9ES Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU\ parent wgEncodeFsuRepliChip off\ shortLabel H9ES 1\ subGroups view=WaveSignal cellType=t3H9ES rep=rep1\ track wgEncodeFsuRepliChipH9esWaveSignalRep1\ type bigWig -2.235592 1.987216\ wgEncodeAwgSegmentationSegwayHelas3 HeLa-S3 Segway bed 9 . HeLa-S3 Genome Segmentation by Segway from ENCODE/Analysis 0 12 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HeLa-S3 Genome Segmentation by Segway from ENCODE/Analysis\ parent wgEncodeAwgSegmentation off\ shortLabel HeLa-S3 Segway\ subGroups tier=t2 cellType=t2HELAS3 method=Segway\ track wgEncodeAwgSegmentationSegwayHelas3\ type bed 9 .\ wgEncodeHaibMethylRrbsHepg2DukeSitesRep2 HepG2 2 bed 9 + HepG2 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 12 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HepG2 2\ subGroups cellType=t2HEPG2 obtainedBy=DUKE treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHepg2DukeSitesRep2\ type bed 9 +\ decodeHotSpotFemale Hot Spot Female bed 4 deCODE recombination map, female >= 10.0 1 12 255 0 255 255 127 255 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 1 color 255,0,255\ configurable on\ longLabel deCODE recombination map, female >= 10.0\ parent hotView\ priority 12\ shortLabel Hot Spot Female\ subGroups view=hot\ track decodeHotSpotFemale\ wgEncodeDukeAffyExonK562SimpleSignalRep1V2 K562 1 bigBed 6 + K562 Exon array Signal Rep 1 from ENCODE/Duke 0 12 46 0 184 150 127 219 1 0 0 expression 1 color 46,0,184\ longLabel K562 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon\ shortLabel K562 1\ subGroups cellType=t1K562 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonK562SimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeUncBsuProtGencK562CellIngelmPepMapGcFt K562 Ce PTM bigBed 12 K562 In-gel ProtG GENCODE11 Hg19 PTM Mapping from ENCODE/UNC/BSU 2 12 46 0 184 150 127 219 1 0 0 expression 1 color 46,0,184\ longLabel K562 In-gel ProtG GENCODE11 Hg19 PTM Mapping from ENCODE/UNC/BSU\ parent wgEncodeUncBsuProtGencViewmPepMapGcFt\ shortLabel K562 Ce PTM\ subGroups view=mPepMapGcFt cellType=K562 localization=CELL protocol=INGEL\ track wgEncodeUncBsuProtGencK562CellIngelmPepMapGcFt\ type bigBed 12\ wgEncodeUwTfbsK562CtcfStdPkRep2 K562 CTCF Pk 2 narrowPeak K562 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 12 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks on\ shortLabel K562 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t1K562 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsK562CtcfStdPkRep2\ type narrowPeak\ wgEncodeGisRnaSeqK562CytosolPapPlusRawRep2 K562 cyto pA+ + 2 bigWig 1.000000 19180.000000 K562 cytosol polyA+ RNA-seq Plus raw signal rep 2 from ENCODE/GIS 2 12 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA+ RNA-seq Plus raw signal rep 2 from ENCODE/GIS\ parent wgEncodeGisRnaSeqViewPlusRawSignal on\ shortLabel K562 cyto pA+ + 2\ subGroups view=PlusRawSignal cellType=t1K562 rnaExtract=longPolyA rep=rep2 localization=cytosol\ track wgEncodeGisRnaSeqK562CytosolPapPlusRawRep2\ type bigWig 1.000000 19180.000000\ wgEncodeSunyAlbanyGeneStK562Elavl1RbpAssocRnaV2 K562 ELAVL1 broadPeak K562 ELAVL1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 12 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 ELAVL1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt\ shortLabel K562 ELAVL1\ subGroups cellType=t1K562 factor=ELAVL1\ track wgEncodeSunyAlbanyGeneStK562Elavl1RbpAssocRnaV2\ type broadPeak\ wgEncodeOpenChromDnaseK562G2mphaseBaseOverlapSignal K562 G2-M OS bigWig 0.000000 319.000000 K562 G2-M phase DNaseI HS Overlap Signal from ENCODE/Duke 2 12 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 G2-M phase DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel K562 G2-M OS\ subGroups view=SIGBO cellType=t1K562 treatment=G2MPHASE\ track wgEncodeOpenChromDnaseK562G2mphaseBaseOverlapSignal\ type bigWig 0.000000 319.000000\ wgEncodeUchicagoTfbsK562Enr4a1ControlSig K562 NR4A1/GFP Sg bigWig -2001.193604 1318.283081 K562 NR4A1 GFP-tag TFBS Signal from ENCODE/UChicago 2 12 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 NR4A1 GFP-tag TFBS Signal from ENCODE/UChicago\ parent wgEncodeUchicagoTfbsViewSignal\ shortLabel K562 NR4A1/GFP Sg\ subGroups view=Signal factor=NR4A1 cellType=K562 control=ControlNR4A1 rep=repPOOLED\ track wgEncodeUchicagoTfbsK562Enr4a1ControlSig\ type bigWig -2001.193604 1318.283081\ wgEncodeAffyRnaChipFiltTransfragsK562NucleusLongpolya K562 nucl pA+ broadPeak K562 nucleus polyA+ Microarray Transfrags from ENCODE Affy/CSHL 3 12 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleus polyA+ Microarray Transfrags from ENCODE Affy/CSHL\ parent wgEncodeAffyRnaChipViewFiltTransfrags\ shortLabel K562 nucl pA+\ subGroups view=FiltTransfrags cellType=t1K562 localization=dNUCLEUS rnaExtract=longPolyA\ track wgEncodeAffyRnaChipFiltTransfragsK562NucleusLongpolya\ type broadPeak\ wgEncodeUwRepliSeqK562S1PctSignalRep1 K562 S1 1 bigWig 1.000000 100.000000 K562 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 12 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel K562 S1 1\ subGroups view=v1PctSignal cellType=t1K562 phase=p2S1 rep=rep1\ track wgEncodeUwRepliSeqK562S1PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeUwDnaseK562RawRep1 K562 Sg 1 bigWig 1.000000 66237.000000 K562 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 12 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw\ shortLabel K562 Sg 1\ subGroups view=zRSig cellType=t1K562 rep=rep1 treatment=None\ track wgEncodeUwDnaseK562RawRep1\ type bigWig 1.000000 66237.000000\ wgEncodeOpenChromFaireK562OhureaBaseOverlapSignal K562 urea FAIR OS bigWig 0.000000 1562.000000 K562 Hydroxyurea FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 12 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 Hydroxyurea FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel K562 urea FAIR OS\ subGroups view=SIGBO cellType=t1K562 treatment=HYDROUREA\ track wgEncodeOpenChromFaireK562OhureaBaseOverlapSignal\ type bigWig 0.000000 1562.000000\ lincRNAsCTLiver Liver bed 5 + lincRNAs from liver 1 12 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from liver\ parent lincRNAsAllCellType on\ shortLabel Liver\ subGroups view=lincRNAsRefseqExp tissueType=liver\ track lincRNAsCTLiver\ phastCons46wayPlacental Mammal Cons wig 0 1 Placental Mammal Conservation by PhastCons 0 12 25 95 25 95 25 25 0 0 0 compGeno 0 altColor 95,25,25\ autoScale off\ color 25,95,25\ configurable on\ longLabel Placental Mammal Conservation by PhastCons\ maxHeightPixels 100:40:11\ noInherit on\ parent cons46wayViewphastcons on\ priority 12\ shortLabel Mammal Cons\ spanList 1\ subGroups view=phastcons clade=mammal\ track phastCons46wayPlacental\ type wig 0 1\ windowingFunction mean\ wgEncodeUwAffyExonArrayMcf7SimpleSignalRep1 MCF-7 1 broadPeak MCF-7 Exon array Signal Rep 1 from ENCODE/UW 0 12 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel MCF-7 1\ subGroups cellType=t2MCF7 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayMcf7SimpleSignalRep1\ type broadPeak\ wgEncodeHaibGenotypeMcf7RegionsRep2 MCF-7 2 bed 9 + MCF-7 Copy number variants Replicate 2 from ENCODE/HAIB 0 12 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MCF-7 Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel MCF-7 2\ subGroups cellType=t2MCF7 obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeMcf7RegionsRep2\ type bed 9 +\ wgEncodeSydhHistoneMcf7H3k27acUcdPk MCF-7 H3K27ac narrowPeak MCF-7 H3K27ac Histone Modifications by ChIP-seq Peaks from ENCODE/SYDH 3 12 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 H3K27ac Histone Modifications by ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks off\ shortLabel MCF-7 H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=bMCF7 control=UCD treatment=NONE\ track wgEncodeSydhHistoneMcf7H3k27acUcdPk\ type narrowPeak\ wgEncodeGisChiaPetMcf7CtcfSigRep2 MCF7 CTCF Sig 2 bigWig 1.000000 2958.000000 MCF-7 CTCF ChIA-PET Signal Rep 2 from ENCODE/GIS-Ruan 2 12 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 CTCF ChIA-PET Signal Rep 2 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetSignal off\ shortLabel MCF7 CTCF Sig 2\ subGroups view=Signal factor=CTCF cellType=t2MCF7 rep=rep2\ track wgEncodeGisChiaPetMcf7CtcfSigRep2\ type bigWig 1.000000 2958.000000\ uMassBrainHistoneSignalS9NeuP68yrsF NeuN+ 68yrs F bigWig UMMS Brain Histone H3K4me3 (NeuN+ D9) Gender-female Age-68 2 12 30 118 30 142 186 142 0 0 0 regulation 0 color 30,118,30\ longLabel UMMS Brain Histone H3K4me3 (NeuN+ D9) Gender-female Age-68\ parent uMassBrainHistoneViewSignal\ shortLabel NeuN+ 68yrs F\ subGroups view=Signal donor=j_9 cellType=norm sex=female age=c_old\ track uMassBrainHistoneSignalS9NeuP68yrsF\ type bigWig\ nexterarapidcapture_exome_targetedregions Nextera Rapid T bigBed 4 Illumina - Nextera Rapid Capture Exome Target Regions 0 12 22 62 164 138 158 209 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/nexterarapidcapture_exome_targetedregions.bb\ color 22,62,164\ longLabel Illumina - Nextera Rapid Capture Exome Target Regions\ parent exomeProbesets off\ shortLabel Nextera Rapid T\ track nexterarapidcapture_exome_targetedregions\ type bigBed 4\ polyASeqSitesMaqcUhr1Rev PolyA-Seq MaqcUhr1 bigWig 0.200000 18536.800781 Poly(A)-tail sequencing of MAQC UHR (replicate 1) from Merck (Rev strand) 2 12 0 0 0 127 127 127 0 0 0 rna 0 color 0,0,0\ longLabel Poly(A)-tail sequencing of MAQC UHR (replicate 1) from Merck (Rev strand)\ parent polyASeqSitesSignalView\ shortLabel PolyA-Seq MaqcUhr1\ subGroups view=Signal tissType=MaqcUhr1 strand=rev\ track polyASeqSitesMaqcUhr1Rev\ type bigWig 0.200000 18536.800781\ unipRepeat Repeats bigBed 12 + UniProt Repeats 1 12 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg19/uniprot/unipRepeat.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ longLabel UniProt Repeats\ parent uniprot\ priority 12\ shortLabel Repeats\ track unipRepeat\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#family_and_domains" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility dense\ burgeRnaSeqGemMapperAlignLymphNode RNA-seq Lymph Node bed 12 Burge Lab RNA-seq 32mer Reads from Lymph Node 1 12 12 12 120 133 133 187 0 0 0 expression 1 longLabel Burge Lab RNA-seq 32mer Reads from Lymph Node\ parent burgeRnaSeqGemMapperAlignViewAlignments off\ shortLabel RNA-seq Lymph Node\ subGroups view=Alignments tissueType=lymphNode\ track burgeRnaSeqGemMapperAlignLymphNode\ intronEst Spliced ESTs psl est Human ESTs That Have Been Spliced 0 12 0 0 0 127 127 127 1 0 0

Description

\ \

\ This track shows alignments between human expressed sequence tags\ (ESTs) in \ GenBank and the genome that show signs of splicing when\ aligned against the genome. ESTs are single-read sequences, typically about\ 500 bases in length, that usually represent fragments of transcribed genes.\

\ \

\ To be considered spliced, an EST must show\ evidence of at least one canonical intron (i.e., the genomic\ sequence between EST alignment blocks must be at least 32 bases in\ length and have GT/AG ends). By requiring splicing, the level\ of contamination in the EST databases is drastically reduced\ at the expense of eliminating many genuine 3' ESTs.\ For a display of all ESTs (including unspliced), see the\ human EST track.\

\ \

Display Conventions and Configuration

\ \

\ This track follows the display conventions for\ \ PSL alignment tracks. In dense display mode, darker shading\ indicates a larger number of aligned ESTs.\

\ \

\ The strand information (+/-) indicates the\ direction of the match between the EST and the matching\ genomic sequence. It bears no relationship to the direction\ of transcription of the RNA with which it might be associated.\

\ \

\ The description page for this track has a filter that can be used to change\ the display mode, alter the color, and include/exclude a subset of items\ within the track. This may be helpful when many items are shown in the track\ display, especially when only some are relevant to the current task.\

\ \

\ To use the filter:\

    \
  1. Type a term in one or more of the text boxes to filter the EST\ display. For example, to apply the filter to all ESTs expressed in a specific\ organ, type the name of the organ in the tissue box. To view the list of\ valid terms for each text box, consult the table in the Table Browser that\ corresponds to the factor on which you wish to filter. For example, the\ "tissue" table contains all the types of tissues that can be\ entered into the tissue text box. Multiple terms may be entered at once,\ separated by a space. Wildcards may also be used in the filter.
    2. \
  2. If filtering on more than one value, choose the desired combination\ logic. If "and" is selected, only ESTs that match all filter\ criteria will be highlighted. If "or" is selected, ESTs that\ match any one of the filter criteria will be highlighted.
    3. \
  3. Choose the color or display characteristic that should be used to\ highlight or include/exclude the filtered items. If "exclude" is\ chosen, the browser will not display ESTs that match the filter criteria.\ If "include" is selected, the browser will display only those\ ESTs that match the filter criteria.
    4. \
\

\ \

\ This track may also be configured to display base labeling, a feature that\ allows the user to display all bases in the aligning sequence or only those\ that differ from the genomic sequence. For more information about this option,\ go to the\ \ Base Coloring for Alignment Tracks page.\ Several types of alignment gap may also be colored;\ for more information, go to the\ \ Alignment Insertion/Deletion Display Options page.\

\ \

Methods

\ \

\ To make an EST, RNA is isolated from cells and reverse\ transcribed into cDNA. Typically, the cDNA is cloned\ into a plasmid vector and a read is taken from the 5'\ and/or 3' primer. For most — but not all — ESTs, the\ reverse transcription is primed by an oligo-dT, which\ hybridizes with the poly-A tail of mature mRNA. The\ reverse transcriptase may or may not make it to the 5'\ end of the mRNA, which may or may not be degraded.\

\ \

\ In general, the 3' ESTs mark the end of transcription\ reasonably well, but the 5' ESTs may end at any point\ within the transcript. Some of the newer cap-selected\ libraries cover transcription start reasonably well. Before the\ cap-selection techniques\ emerged, some projects used random rather than poly-A\ priming in an attempt to retrieve sequence distant from the\ 3' end. These projects were successful at this, but as\ a side effect also deposited sequences from unprocessed\ mRNA and perhaps even genomic sequences into the EST databases.\ Even outside of the random-primed projects, there is a\ degree of non-mRNA contamination. Because of this, a\ single unspliced EST should be viewed with considerable\ skepticism.\

\ \

\ To generate this track, human ESTs from GenBank were aligned\ against the genome using blat. Note that the maximum intron length\ allowed by blat is 750,000 bases, which may eliminate some ESTs with very\ long introns that might otherwise align. When a single\ EST aligned in multiple places, the alignment having the\ highest base identity was identified. Only alignments having\ a base identity level within 0.5% of the best and at least 96% base identity\ with the genomic sequence are displayed in this track.\

\ \

Credits

\ \

\ This track was produced at UCSC from EST sequence data\ submitted to the international public sequence databases by\ scientists worldwide.\

\ \

References

\

\ Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW.\ \ GenBank.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42.\ PMID: 23193287; PMC: PMC3531190\

\ \

\ Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\ GenBank: update.\ Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6.\ PMID: 14681350; PMC: PMC308779\

\ \

\ Kent WJ.\ BLAT - the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

\ rna 1 baseColorUseSequence genbank\ group rna\ indelDoubleInsert on\ indelQueryInsert on\ intronGap 30\ longLabel Human ESTs That Have Been Spliced\ maxItems 300\ priority 12\ shortLabel Spliced ESTs\ showDiffBasesAllScales .\ spectrum on\ track intronEst\ type psl est\ visibility hide\ chainTaeGut2 Zebra finch Chain chain taeGut2 Zebra finch (Feb. 2013 (WashU taeGut324/taeGut2)) Chained Alignments 3 13 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Zebra finch (Feb. 2013 (WashU taeGut324/taeGut2)) Chained Alignments\ otherDb taeGut2\ parent vertebrateChainNetViewchain off\ shortLabel Zebra finch Chain\ subGroups view=chain species=s023 clade=c01\ track chainTaeGut2\ type chain taeGut2\ chainCalJac3 Marmoset Chain chain calJac3 Marmoset (March 2009 (WUGSC 3.2/calJac3)) Chained Alignments 3 13 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Marmoset (March 2009 (WUGSC 3.2/calJac3)) Chained Alignments\ otherDb calJac3\ parent primateChainNetViewchain off\ shortLabel Marmoset Chain\ subGroups view=chain species=s034b clade=c02\ track chainCalJac3\ type chain calJac3\ chainAilMel1 Panda Chain chain ailMel1 Panda (Dec. 2009 (BGI-Shenzhen 1.0/ailMel1)) Chained Alignments 3 13 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Panda (Dec. 2009 (BGI-Shenzhen 1.0/ailMel1)) Chained Alignments\ otherDb ailMel1\ parent placentalChainNetViewchain off\ shortLabel Panda Chain\ subGroups view=chain species=s033 clade=c01\ track chainAilMel1\ type chain ailMel1\ phastCons100way 100 Vert. Cons wig 0 1 100 vertebrates conservation by PhastCons 0 13 70 130 70 130 70 70 0 0 0 compGeno 0 altColor 130,70,70\ autoScale off\ color 70,130,70\ configurable on\ longLabel 100 vertebrates conservation by PhastCons\ maxHeightPixels 100:40:11\ noInherit on\ parent cons100wayViewphastcons off\ priority 13\ shortLabel 100 Vert. Cons\ spanList 1\ subGroups view=phastcons clade=all\ track phastCons100way\ type wig 0 1\ windowingFunction mean\ wgEncodeHaibRnaSeqA549Dex500pmRawRep1 A549 DEX500pM 1 bigWig 0.117905 1144.349976 A549 DEX 1 hr 500 pM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 13 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 DEX 1 hr 500 pM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal on\ shortLabel A549 DEX500pM 1\ subGroups view=RawSignal cellType=t2A549 treatment=DEX500PM rep=rep1\ track wgEncodeHaibRnaSeqA549Dex500pmRawRep1\ type bigWig 0.117905 1144.349976\ encTfChipPkENCFF533NIV A549 ELF1 narrowPeak Transcription Factor ChIP-seq Peaks of ELF1 in A549 from ENCODE 3 (ENCFF533NIV) 1 13 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ELF1 in A549 from ENCODE 3 (ENCFF533NIV)\ parent encTfChipPk off\ shortLabel A549 ELF1\ subGroups cellType=A549 factor=ELF1\ track encTfChipPkENCFF533NIV\ pgAbtIllum ABTutu Illum pgSnp ABTutu Genome Variants, Illumina 7.2X 3 13 0 0 0 127 127 127 0 0 0 varRep 1 longLabel ABTutu Genome Variants, Illumina 7.2X\ origAssembly hg18\ parent pgSnpPSU\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel ABTutu Illum\ subGroups view=A_PSU id=AE_ABTutu type=SNP\ track pgAbtIllum\ agilentCgh4x180k Ag CGH 4x180k bed 4 . Agilent SurePrint G3 Human CGH Microarray 4x180K AMADID 022060 0 13 255 128 0 255 191 127 0 0 0 varRep 1 color 255,128,0\ longLabel Agilent SurePrint G3 Human CGH Microarray 4x180K AMADID 022060\ parent genotypeArrays\ priority 13\ shortLabel Ag CGH 4x180k\ track agilentCgh4x180k\ type bed 4 .\ wgEncodeHaibGenotypeAg04449RegionsRep1 AG04449 1 bed 9 + AG04449 Copy number variants Replicate 1 from ENCODE/HAIB 0 13 0 0 0 127 127 127 0 0 0 varRep 1 longLabel AG04449 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel AG04449 1\ subGroups cellType=t3AG04449 obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeAg04449RegionsRep1\ type bed 9 +\ wgEncodeHaibMethyl450Ag09309SitesRep1 AG09309 bed 9 AG09309 Methylation 450K Bead Array from ENCODE/HAIB 1 13 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09309 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel AG09309\ subGroups cellType=t3AG09309 obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450Ag09309SitesRep1\ type bed 9\ wgEncodeAwgDnaseUwAg09309UniPk AG09309 DNase narrowPeak AG09309 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 13 0 0 0 127 127 127 1 0 0 regulation 1 longLabel AG09309 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel AG09309 DNase\ subGroups tier=a30 cellType=AG09309\ track wgEncodeAwgDnaseUwAg09309UniPk\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_ctss_fwd AorticSmsToFgf2_00hr30minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_forward 0 13 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep2%20%28LK8%29.CNhs13360.12742-135I6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12742-135I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_tpm_fwd AorticSmsToFgf2_00hr30minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_forward 1 13 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep2%20%28LK8%29.CNhs13360.12742-135I6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12742-135I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6\ urlLabel FANTOM5 Details:\ gtexEqtlTissueBrainHippocampus brainHippocampus bed 9 + Expression QTL in Brain_Hippocampus from GTEx V6 0 13 238 238 0 246 246 127 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 238,238,0\ idInUrlSql select gene from gtexEqtlTissueBrainHippocampus where name='%s'\ longLabel Expression QTL in Brain_Hippocampus from GTEx V6\ parent gtexEqtlTissue on\ shortLabel brainHippocampus\ track gtexEqtlTissueBrainHippocampus\ dhcHumDerDenAncCcdsSpliceHighFreq CC Splice HiF bigBed 4 + Modern Human Derived (HighFreq), Denisova Ancestral: CCDS Splice 3 13 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (HighFreq), Denisova Ancestral: CCDS Splice\ parent dhcHumDerDenAncCcds\ shortLabel CC Splice HiF\ subGroups view=Ccds subset=CcdsSplice freq=HighFreq\ track dhcHumDerDenAncCcdsSpliceHighFreq\ filterConflicting GIAB genotype conflict bigBed 3 NIST Genome-in-a-bottle: calls with unresolved conflicting genotypes after arbitration 1 13 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/bbi/problematic/filterConflicting.bb\ longLabel NIST Genome-in-a-bottle: calls with unresolved conflicting genotypes after arbitration\ parent problematic\ priority 13\ shortLabel GIAB genotype conflict\ track filterConflicting\ type bigBed 3\ visibility dense\ wgEncodeAwgTfbsSydhGm12878Ctcfsc15914c20UniPk GM12878 CTCF s narrowPeak GM12878 TFBS Uniform Peaks of CTCF_(SC-15914) from ENCODE/Stanford/Analysis 1 13 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of CTCF_(SC-15914) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 CTCF s\ subGroups tier=a10 cellType=a10GM12878 factor=CTCF lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Ctcfsc15914c20UniPk\ wgEncodeBroadHistoneGm12878H3k9acStdPk GM12878 H3K9ac broadPeak GM12878 H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 13 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel GM12878 H3K9ac\ subGroups view=Peaks factor=H3K09AC cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H3k9acStdPk\ type broadPeak\ wgEncodeSunyRipSeqGm12878T7tagSigRep1 GM12878 T7Tag 1 bigWig 0.000000 67823.984375 GM12878 T7Tag RIP-seq Signal Rep 1 from ENCODE/SUNY 2 13 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 T7Tag RIP-seq Signal Rep 1 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewSignal off\ shortLabel GM12878 T7Tag 1\ subGroups view=Signal factor=T7Tag cellType=t1GM12878 rep=rep1\ track wgEncodeSunyRipSeqGm12878T7tagSigRep1\ type bigWig 0.000000 67823.984375\ wgEncodeCaltechRnaSeqGm12878R1x75dTh1014UMinusRawRep2V4 GM78 1x75D - 2 bigWig -54762.832031 -0.025000 GM12878 single read RNA-seq Minus Signal Rep 2 from ENCODE/Caltech 2 13 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 single read RNA-seq Minus Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewMinusSignal\ shortLabel GM78 1x75D - 2\ subGroups view=MinusSignal cellType=t1GM12878 readType=r1x75D insertLength=ilNa rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12878R1x75dTh1014UMinusRawRep2V4\ type bigWig -54762.832031 -0.025000\ wgEncodeHaibTfbsGm12878Bcl11aPcr1xPkRep1 GM78 BCL PCR1 1 broadPeak GM12878 BCL11A PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 13 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 BCL11A PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 BCL PCR1 1\ subGroups view=Peaks factor=BCL11A cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Bcl11aPcr1xPkRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqGm12878CellPapMinusRawSigRep1 GM78 cel pA+ - 1 bigWig 1.000000 216835.000000 GM12878 whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 13 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig on\ shortLabel GM78 cel pA+ - 1\ subGroups view=MinusSignal cellType=t1GM12878 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878CellPapMinusRawSigRep1\ type bigWig 1.000000 216835.000000\ wgEncodeSydhTfbsGm12878Corestsc30189IggmusPk GM78 COREST IgM narrowPeak GM12878 COREST SC30189 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 13 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 COREST SC30189 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 COREST IgM\ subGroups view=Peaks factor=CORESTSC30189 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Corestsc30189IggmusPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapMinusRawRep2 GM78 cyto TAP - 2 bigWig 1.000000 4319529.000000 GM12878 TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 13 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel GM78 cyto TAP - 2\ subGroups view=MinusSignal cellType=t1GM12878 localization=CYTOSOL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapMinusRawRep2\ type bigWig 1.000000 4319529.000000\ wgEncodeUwHistoneGm12878H3k36me3StdHotspotsRep1 GM78 H3K36M3 Ht 1 broadPeak GM12878 H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 13 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot on\ shortLabel GM78 H3K36M3 Ht 1\ subGroups view=Hot factor=H3K36ME3 cellType=t1GM12878 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12878H3k36me3StdHotspotsRep1\ type broadPeak\ wgEncodeRikenCageGm12878NucleolusTotalPlusSignal GM78 nlus tot + 1 bigWig 0.040000 4464.319824 GM12878 nucleolus total CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 13 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleolus total CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel GM78 nlus tot + 1\ subGroups view=PlusRawSignal cellType=t1GM12878 localization=nucleolus rnaExtract=total rep=rep0 rank=rank1\ track wgEncodeRikenCageGm12878NucleolusTotalPlusSignal\ type bigWig 0.040000 4464.319824\ wgEncodeOpenChromChipH1hescCmycBaseOverlapSignal H1-hESC cMyc OS bigWig 0.000000 626.000000 H1-hESC cMyc TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 13 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC cMyc TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo\ shortLabel H1-hESC cMyc OS\ subGroups treatment=AANONE view=SIGBO factor=CMYC cellType=t1H1HESC\ track wgEncodeOpenChromChipH1hescCmycBaseOverlapSignal\ type bigWig 0.000000 626.000000\ hapMapRelease24CombinedRecombMap HapMap bigWig -1.0 91.6 HapMap Release 24 combined recombination map 0 13 50 50 50 152 152 152 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 0 color 50,50,50\ configurable on\ longLabel HapMap Release 24 combined recombination map\ parent otherMaps\ priority 13\ shortLabel HapMap\ subGroups view=other\ track hapMapRelease24CombinedRecombMap\ type bigWig -1.0 91.6\ wgEncodeAwgSegmentationChromhmmHepg2 HepG2 ChromHMM bed 9 . HepG2 Genome Segmentation by ChromHMM from ENCODE/Analysis 0 13 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HepG2 Genome Segmentation by ChromHMM from ENCODE/Analysis\ parent wgEncodeAwgSegmentation off\ shortLabel HepG2 ChromHMM\ subGroups tier=t2 cellType=t2HEPG2 method=ChromHMM\ track wgEncodeAwgSegmentationChromhmmHepg2\ type bed 9 .\ wgEncodeUwDgfHepg2Hotspots HepG2 Hot broadPeak HepG2 DNaseI DGF Hotspots from ENCODE/UW 0 13 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots on\ shortLabel HepG2 Hot\ subGroups view=Hotspots cellType=t2HEPG2 treatment=aNONE rep=rep1\ track wgEncodeUwDgfHepg2Hotspots\ type broadPeak\ wgEncodeOpenChromSynthHtr8Pk HTR8svn Syn Pk bed 9 + HTR8svn DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom 0 13 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HTR8svn DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom\ origAssembly hg19\ parent wgEncodeOpenChromSynth off\ shortLabel HTR8svn Syn Pk\ subGroups cellType=t3HTR8SVN treatment=aNone\ track wgEncodeOpenChromSynthHtr8Pk\ type bed 9 +\ wgEncodeHaibMethylRrbsImr90UwSitesRep1 IMR90 1 bed 9 + IMR90 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 13 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel IMR90 1\ subGroups cellType=t2IMR90 obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsImr90UwSitesRep1\ type bed 9 +\ wgEncodeFsuRepliChipIpshfib2ips4WaveSignalRep1 iPS_hFib2_iPS4 1 bigWig -3.052505 2.113655 iPS hFib2 iPS4 Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU 0 13 0 0 0 127 127 127 0 0 0 regulation 0 longLabel iPS hFib2 iPS4 Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU\ parent wgEncodeFsuRepliChip off\ shortLabel iPS_hFib2_iPS4 1\ subGroups view=WaveSignal cellType=t3IPSHFIB2IPS4 rep=rep1\ track wgEncodeFsuRepliChipIpshfib2ips4WaveSignalRep1\ type bigWig -3.052505 2.113655\ wgEncodeDukeAffyExonK562SimpleSignalRep2V2 K562 2 bigBed 6 + K562 Exon array Signal Rep 2 from ENCODE/Duke 0 13 46 0 184 150 127 219 1 0 0 expression 1 color 46,0,184\ longLabel K562 Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon\ shortLabel K562 2\ subGroups cellType=t1K562 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonK562SimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeGisRnaPetK562ChromatinTotalClustersRep1 K562 chrm tot 1 bed 6 + K562 chromatin total clone-based RNA PET Clusters Rep 1 from ENCODE/GIS 2 13 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 chromatin total clone-based RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel K562 chrm tot 1\ subGroups view=v1Clusters cellType=aK562 cloned=Based localization=chromatin rnaExtract=total rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562ChromatinTotalClustersRep1\ type bed 6 +\ wgEncodeUwTfbsK562CtcfStdRawRep2 K562 CTCF Sg 2 bigWig 1.000000 8080.000000 K562 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 13 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig on\ shortLabel K562 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t1K562 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsK562CtcfStdRawRep2\ type bigWig 1.000000 8080.000000\ wgEncodeUwDnaseK562HotspotsRep2 K562 Ht 2 broadPeak K562 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 13 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot\ shortLabel K562 Ht 2\ subGroups view=Hot cellType=t1K562 rep=rep2 treatment=None\ track wgEncodeUwDnaseK562HotspotsRep2\ type broadPeak\ wgEncodeOpenChromFaireK562NabutPk K562 NaBu FAIR Pk narrowPeak K562 Sodium Butyrate FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 13 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 Sodium Butyrate FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel K562 NaBu FAIR Pk\ subGroups view=Peaks cellType=t1K562 treatment=NaBut\ track wgEncodeOpenChromFaireK562NabutPk\ type narrowPeak\ wgEncodeOpenChromDnaseK562NabutPk K562 NaBut Pk narrowPeak K562 NaBut DNaseI HS Peaks from ENCODE/Duke 3 13 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 NaBut DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel K562 NaBut Pk\ subGroups view=Peaks cellType=t1K562 treatment=NABUT\ track wgEncodeOpenChromDnaseK562NabutPk\ type narrowPeak\ wgEncodeAffyRnaChipFiltTransfragsK562NucleoplasmTotal K562 nplm tot broadPeak K562 nucleoplasm total Microarray Transfrags from ENCODE Affy/CSHL 3 13 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleoplasm total Microarray Transfrags from ENCODE Affy/CSHL\ noInherit on\ parent wgEncodeAffyRnaChipViewFiltTransfrags\ shortLabel K562 nplm tot\ subGroups view=FiltTransfrags cellType=t1K562 localization=eNUCLEOPLASM rnaExtract=total\ track wgEncodeAffyRnaChipFiltTransfragsK562NucleoplasmTotal\ type broadPeak\ wgEncodeSunyAlbanyGeneStK562Pabpc1RbpAssocRnaV2 K562 PABPC1 broadPeak K562 PABPC1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 13 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 PABPC1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt\ shortLabel K562 PABPC1\ subGroups cellType=t1K562 factor=PABPC1\ track wgEncodeSunyAlbanyGeneStK562Pabpc1RbpAssocRnaV2\ type broadPeak\ wgEncodeUwRepliSeqK562S2PctSignalRep1 K562 S2 1 bigWig 1.000000 100.000000 K562 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 13 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel K562 S2 1\ subGroups view=v1PctSignal cellType=t1K562 phase=p3S2 rep=rep1\ track wgEncodeUwRepliSeqK562S2PctSignalRep1\ type bigWig 1.000000 100.000000\ lincRNAsCTLung Lung bed 5 + lincRNAs from lung 1 13 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from lung\ parent lincRNAsAllCellType on\ shortLabel Lung\ subGroups view=lincRNAsRefseqExp tissueType=lung\ track lincRNAsCTLung\ wgEncodeUwAffyExonArrayMcf7SimpleSignalRep2 MCF-7 2 broadPeak MCF-7 Exon array Signal Rep 2 from ENCODE/UW 0 13 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel MCF-7 2\ subGroups cellType=t2MCF7 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayMcf7SimpleSignalRep2\ type broadPeak\ wgEncodeSydhHistoneMcf7H3k27acUcdSig MCF-7 H3K27ac bigWig 1.000000 9587.000000 MCF-7 H3K27ac Histone Modifications by ChIP-seq Signal from ENCODE/SYDH 2 13 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 H3K27ac Histone Modifications by ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel MCF-7 H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=bMCF7 control=UCD treatment=NONE\ track wgEncodeSydhHistoneMcf7H3k27acUcdSig\ type bigWig 1.000000 9587.000000\ wgEncodeGisChiaPetMcf7EraaInteractionsRep1 MCF7 ERa Int 1 bed 12 MCF-7 ERalpha a ChIA-PET Interactions Rep 1 from ENCODE/GIS-Ruan 2 13 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 ERalpha a ChIA-PET Interactions Rep 1 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetInteractions off\ shortLabel MCF7 ERa Int 1\ subGroups view=Interactions factor=ERAA cellType=t2MCF7 rep=rep1\ track wgEncodeGisChiaPetMcf7EraaInteractionsRep1\ type bed 12\ uMassBrainHistoneSignalS10NeuP69yrsF NeuN+ 69yrs F bigWig UMMS Brain Histone H3K4me3 (NeuN+ D10) Gender-female Age-69 2 13 30 118 30 142 186 142 0 0 0 regulation 0 color 30,118,30\ longLabel UMMS Brain Histone H3K4me3 (NeuN+ D10) Gender-female Age-69\ parent uMassBrainHistoneViewSignal\ shortLabel NeuN+ 69yrs F\ subGroups view=Signal donor=k_10 cellType=norm sex=female age=c_old\ track uMassBrainHistoneSignalS10NeuP69yrsF\ type bigWig\ nexterarapidcapture_exome_targetedregions_v1 Nextera Rapid V1.2 T bigBed 4 Illumina - Nextera Rapid Capture Exome V1.2 Target Regions 0 13 22 62 164 138 158 209 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/nexterarapidcapture_exome_targetedregions_v1.2.bb\ color 22,62,164\ longLabel Illumina - Nextera Rapid Capture Exome V1.2 Target Regions\ parent exomeProbesets off\ shortLabel Nextera Rapid V1.2 T\ track nexterarapidcapture_exome_targetedregions_v1\ type bigBed 4\ polyASeqSitesMaqcUhr2Fwd PolyA-Seq MaqcUhr2 bigWig 0.200000 25301.960938 Poly(A)-tail sequencing of MAQC UHR (replicate 2) from Merck (Fwd strand) 2 13 153 51 51 204 153 153 0 0 0 rna 0 color 153,51,51\ longLabel Poly(A)-tail sequencing of MAQC UHR (replicate 2) from Merck (Fwd strand)\ parent polyASeqSitesSignalView\ shortLabel PolyA-Seq MaqcUhr2\ subGroups view=Signal tissType=MaqcUhr2 strand=fwd\ track polyASeqSitesMaqcUhr2Fwd\ type bigWig 0.200000 25301.960938\ burgeRnaSeqGemMapperAlignSkelMuscle RNA-seq Muscle bed 12 Burge Lab RNA-seq 32mer Reads from Skeletal Muscle 1 13 12 12 120 133 133 187 0 0 0 expression 1 longLabel Burge Lab RNA-seq 32mer Reads from Skeletal Muscle\ parent burgeRnaSeqGemMapperAlignViewAlignments off\ shortLabel RNA-seq Muscle\ subGroups view=Alignments tissueType=skelMuscle\ track burgeRnaSeqGemMapperAlignSkelMuscle\ unipConflict Seq. Conflicts bigBed 12 + UniProt Sequence Conflicts 1 13 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg19/uniprot/unipConflict.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ longLabel UniProt Sequence Conflicts\ parent uniprot off\ priority 13\ shortLabel Seq. Conflicts\ track unipConflict\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#Sequence_conflict_section" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility dense\ uniGene_3 UniGene psl UniGene Alignments 0 13 0 0 0 127 127 127 1 0 0 https://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?ORG=Hs&CID=

Description

\ \

\ This track shows the UniGene genes from NCBI. Each UniGene entry is a set of transcript sequences\ that appear to come from the same transcription locus (gene or expressed pseudogene), together with\ information on protein similarities, gene expression, cDNA clone reagents, and genomic location.\

\ \

\ Coding exons are represented by blocks connected by horizontal lines representing introns. In full\ display mode, arrowheads on the connecting intron lines indicate the direction of transcription.\

\ \

Methods

\ \

\ The UniGene sequence file, Hs.seq.uniq.gz, is downloaded from NCBI. Sequences are aligned to base\ genome using BLAT to create this track.\

\ \

\ When a single UniGene gene aligned in multiple places, the alignment having the highest base\ identity was found. Only alignments having a base identity level within 0.2% of the best and\ at least 96.5% base identity with the genomic sequence were kept.\

\ \

Credits

\ \

\ Thanks to UniGene\ for providing this annotation.\

\ rna 1 group rna\ longLabel UniGene Alignments\ priority 13\ shortLabel UniGene\ spectrum on\ track uniGene_3\ type psl\ url https://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?ORG=Hs&CID=\ visibility hide\ phastCons46way Vertebrate Cons wig 0 1 Vertebrate Conservation by PhastCons 0 13 40 120 40 120 40 40 0 0 0 compGeno 0 altColor 120,40,40\ autoScale off\ color 40,120,40\ configurable on\ longLabel Vertebrate Conservation by PhastCons\ maxHeightPixels 100:40:11\ noInherit on\ parent cons46wayViewphastcons off\ priority 13\ shortLabel Vertebrate Cons\ spanList 1\ subGroups view=phastcons clade=vert\ track phastCons46way\ type wig 0 1\ windowingFunction mean\ netTaeGut2 Zebra finch Net netAlign taeGut2 chainTaeGut2 Zebra finch (Feb. 2013 (WashU taeGut324/taeGut2)) Alignment Net 1 14 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Zebra finch (Feb. 2013 (WashU taeGut324/taeGut2)) Alignment Net\ otherDb taeGut2\ parent vertebrateChainNetViewnet on\ shortLabel Zebra finch Net\ subGroups view=net species=s023 clade=c01\ track netTaeGut2\ type netAlign taeGut2 chainTaeGut2\ netCalJac3 Marmoset Net netAlign calJac3 chainCalJac3 Marmoset (March 2009 (WUGSC 3.2/calJac3)) Alignment Net 1 14 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Marmoset (March 2009 (WUGSC 3.2/calJac3)) Alignment Net\ otherDb calJac3\ parent primateChainNetViewnet on\ shortLabel Marmoset Net\ subGroups view=net species=s034b clade=c02\ track netCalJac3\ type netAlign calJac3 chainCalJac3\ netAilMel1 Panda Net netAlign ailMel1 chainAilMel1 Panda (Dec. 2009 (BGI-Shenzhen 1.0/ailMel1)) Alignment Net 1 14 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Panda (Dec. 2009 (BGI-Shenzhen 1.0/ailMel1)) Alignment Net\ otherDb ailMel1\ parent placentalChainNetViewnet off\ shortLabel Panda Net\ subGroups view=net species=s033 clade=c01\ track netAilMel1\ type netAlign ailMel1 chainAilMel1\ wgEncodeHaibRnaSeqA549Dex500pmAlnRep1 A549 DEX500pM 1 bam A549 DEX 1 hr 500 pM RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 14 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 DEX 1 hr 500 pM RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel A549 DEX500pM 1\ subGroups view=Alignments cellType=t2A549 treatment=DEX500PM rep=rep1\ track wgEncodeHaibRnaSeqA549Dex500pmAlnRep1\ type bam\ encTfChipPkENCFF282AEY A549 ELK1 narrowPeak Transcription Factor ChIP-seq Peaks of ELK1 in A549 from ENCODE 3 (ENCFF282AEY) 1 14 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ELK1 in A549 from ENCODE 3 (ENCFF282AEY)\ parent encTfChipPk off\ shortLabel A549 ELK1\ subGroups cellType=A549 factor=ELK1\ track encTfChipPkENCFF282AEY\ pgAbt454indels ABTutu exome indels pgSnp ABTutu Genome Variants, 454 exome indels 3 14 0 0 0 127 127 127 0 0 0 varRep 1 longLabel ABTutu Genome Variants, 454 exome indels\ origAssembly hg18\ parent pgSnpPSU\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel ABTutu exome indels\ subGroups view=A_PSU id=AE_ABTutu type=Indel\ track pgAbt454indels\ agilentCgh8x60k Ag CGH 8x60k bed 4 . Agilent SurePrint G3 Human CGH Microarray 8x60K AMADID 021924 0 14 0 128 0 127 191 127 0 0 0 varRep 1 color 0,128,0\ longLabel Agilent SurePrint G3 Human CGH Microarray 8x60K AMADID 021924\ parent genotypeArrays\ priority 14\ shortLabel Ag CGH 8x60k\ track agilentCgh8x60k\ type bed 4 .\ wgEncodeUwAffyExonArrayAg04449SimpleSignalRep1 AG04449 1 broadPeak AG04449 Exon array Signal Rep 1 from ENCODE/UW 0 14 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG04449 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel AG04449 1\ subGroups cellType=t3AG04449 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayAg04449SimpleSignalRep1\ type broadPeak\ wgEncodeHaibGenotypeAg04450RegionsRep2 AG04450 1 bed 9 + AG04450 Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB 0 14 0 0 0 127 127 127 0 0 0 varRep 1 longLabel AG04450 Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel AG04450 1\ subGroups cellType=t3AG04450 obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeAg04450RegionsRep2\ type bed 9 +\ wgEncodeHaibMethyl450Ag09319SitesRep1 AG09319 bed 9 AG09319 Methylation 450K Bead Array from ENCODE/HAIB 1 14 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09319 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel AG09319\ subGroups cellType=t3AG09319 obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450Ag09319SitesRep1\ type bed 9\ wgEncodeAwgDnaseUwAg09319UniPk AG09319 DNase narrowPeak AG09319 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 14 0 0 0 127 127 127 1 0 0 regulation 1 longLabel AG09319 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel AG09319 DNase\ subGroups tier=a30 cellType=AG09319\ track wgEncodeAwgDnaseUwAg09319UniPk\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_ctss_rev AorticSmsToFgf2_00hr30minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_reverse 0 14 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep2%20%28LK8%29.CNhs13360.12742-135I6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12742-135I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_tpm_rev AorticSmsToFgf2_00hr30minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_reverse 1 14 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep2%20%28LK8%29.CNhs13360.12742-135I6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12742-135I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6\ urlLabel FANTOM5 Details:\ gtexEqtlTissueBrainHypothalamus brainHypothalamus bed 9 + Expression QTL in Brain_Hypothalamus from GTEx V6 0 14 238 238 0 246 246 127 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 238,238,0\ idInUrlSql select gene from gtexEqtlTissueBrainHypothalamus where name='%s'\ longLabel Expression QTL in Brain_Hypothalamus from GTEx V6\ parent gtexEqtlTissue on\ shortLabel brainHypothalamus\ track gtexEqtlTissueBrainHypothalamus\ dhcHumDerDenAncCcdsUtr3Fixed CC Utr3 Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: CCDS 3' UTR 3 14 0 0 200 127 127 227 0 0 0 denisova 1 color 0,0,200\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: CCDS 3' UTR\ parent dhcHumDerDenAncCcds\ shortLabel CC Utr3 Fxd\ subGroups view=Ccds subset=CcdsUtr3 freq=Fixed\ track dhcHumDerDenAncCcdsUtr3Fixed\ wgEncodeAwgTfbsUtaGm12878CtcfUniPk GM12878 CTCF t narrowPeak GM12878 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 14 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel GM12878 CTCF t\ subGroups tier=a10 cellType=a10GM12878 factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaGm12878CtcfUniPk\ wgEncodeBroadHistoneGm12878H3k9acStdSig GM12878 H3K9ac bigWig 0.040000 6293.839844 GM12878 H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 14 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel GM12878 H3K9ac\ subGroups view=Signal factor=H3K09AC cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H3k9acStdSig\ type bigWig 0.040000 6293.839844\ wgEncodeSunyRipSeqGm12878T7tagSigRep2 GM12878 T7Tag 2 bigWig 0.000000 100213.273438 GM12878 T7Tag RIP-seq Signal Rep 2 from ENCODE/SUNY 2 14 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 T7Tag RIP-seq Signal Rep 2 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewSignal off\ shortLabel GM12878 T7Tag 2\ subGroups view=Signal factor=T7Tag cellType=t1GM12878 rep=rep2\ track wgEncodeSunyRipSeqGm12878T7tagSigRep2\ type bigWig 0.000000 100213.273438\ wgEncodeCaltechRnaSeqGm12878R1x75dTh1014UPlusRawRep1V4 GM78 1x75D + 1 bigWig 0.020000 69070.617188 GM12878 single read RNA-seq Plus Signal Rep 1 from ENCODE/Caltech 2 14 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 single read RNA-seq Plus Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewPlusSignal\ shortLabel GM78 1x75D + 1\ subGroups view=PlusSignal cellType=t1GM12878 readType=r1x75D insertLength=ilNa rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12878R1x75dTh1014UPlusRawRep1V4\ type bigWig 0.020000 69070.617188\ wgEncodeHaibTfbsGm12878Bcl11aPcr1xRawRep1 GM78 BCL11A 1 bigWig 0.181856 137.847000 GM12878 BCL11A PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 14 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 BCL11A PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 BCL11A 1\ subGroups view=RawSignal factor=BCL11A cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Bcl11aPcr1xRawRep1\ type bigWig 0.181856 137.847000\ wgEncodeCshlLongRnaSeqGm12878CellPapMinusRawSigRep2 GM78 cel pA+ - 2 bigWig 1.000000 309358.000000 GM12878 whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 14 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig on\ shortLabel GM78 cel pA+ - 2\ subGroups view=MinusSignal cellType=t1GM12878 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878CellPapMinusRawSigRep2\ type bigWig 1.000000 309358.000000\ wgEncodeSydhTfbsGm12878Corestsc30189IggmusSig GM78 COREST IgM bigWig 1.000000 9205.000000 GM12878 COREST SC30189 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 14 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 COREST SC30189 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 COREST IgM\ subGroups view=Signal factor=CORESTSC30189 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Corestsc30189IggmusSig\ type bigWig 1.000000 9205.000000\ wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapPlusRawRep1 GM78 cyto TAP + 1 bigWig 1.000000 1613718.000000 GM12878 TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 14 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel GM78 cyto TAP + 1\ subGroups view=PlusSignal cellType=t1GM12878 localization=CYTOSOL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapPlusRawRep1\ type bigWig 1.000000 1613718.000000\ wgEncodeUwHistoneGm12878H3k36me3StdPkRep1 GM78 H3K36M3 Pk 1 narrowPeak GM12878 H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 14 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks on\ shortLabel GM78 H3K36M3 Pk 1\ subGroups view=Peaks factor=H3K36ME3 cellType=t1GM12878 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12878H3k36me3StdPkRep1\ type narrowPeak\ wgEncodeRikenCageGm12878NucleolusTotalMinusSignal GM78 nlus tot - 1 bigWig 0.040000 4464.319824 GM12878 nucleolus total CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 14 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleolus total CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel GM78 nlus tot - 1\ subGroups view=MinusRawSignal cellType=t1GM12878 localization=nucleolus rnaExtract=total rep=rep0 rank=rank1\ track wgEncodeRikenCageGm12878NucleolusTotalMinusSignal\ type bigWig 0.040000 4464.319824\ wgEncodeOpenChromChipH1hescCtcfPk H1-hESC CTCF Pk narrowPeak H1-hESC CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 14 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks\ shortLabel H1-hESC CTCF Pk\ subGroups treatment=AANONE view=Peaks factor=CTCF cellType=t1H1HESC\ track wgEncodeOpenChromChipH1hescCtcfPk\ type narrowPeak\ hapMapRelease24CEURecombMap HapMap CEU bigWig 0.0 111.0 HapMap Release 24 CEU recombination map 0 14 80 80 80 167 167 167 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 0 color 80,80,80\ configurable on\ longLabel HapMap Release 24 CEU recombination map\ parent otherMaps\ priority 14\ shortLabel HapMap CEU\ subGroups view=other\ track hapMapRelease24CEURecombMap\ type bigWig 0.0 111.0\ wgEncodeAwgSegmentationCombinedHepg2 HepG2 Combined bed 9 . HepG2 Genome Segmentation by Combined Segway+ChromHMM from ENCODE/Analysis 0 14 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HepG2 Genome Segmentation by Combined Segway+ChromHMM from ENCODE/Analysis\ parent wgEncodeAwgSegmentation off\ shortLabel HepG2 Combined\ subGroups tier=t2 cellType=t2HEPG2 method=Combined\ track wgEncodeAwgSegmentationCombinedHepg2\ type bed 9 .\ wgEncodeUwDgfHepg2Pk HepG2 Pk narrowPeak HepG2 DNaseI DGF Peaks from ENCODE/UW 0 14 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks on\ shortLabel HepG2 Pk\ subGroups view=Peaks cellType=t2HEPG2 treatment=aNONE rep=rep1\ track wgEncodeUwDgfHepg2Pk\ type narrowPeak\ wgEncodeHaibMethylRrbsImr90UwSitesRep2 IMR90 2 bed 9 + IMR90 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 14 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel IMR90 2\ subGroups cellType=t2IMR90 obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsImr90UwSitesRep2\ type bed 9 +\ wgEncodeFsuRepliChipIpshfib2ips4WaveSignalRep2 iPS_hFib2_iPS4 2 bigWig -2.065338 2.065192 iPS hFib2 iPS4 Repli-chip Wavelet-smoothed Signal Rep 2 from ENCODE/FSU 0 14 0 0 0 127 127 127 0 0 0 regulation 0 longLabel iPS hFib2 iPS4 Repli-chip Wavelet-smoothed Signal Rep 2 from ENCODE/FSU\ parent wgEncodeFsuRepliChip off\ shortLabel iPS_hFib2_iPS4 2\ subGroups view=WaveSignal cellType=t3IPSHFIB2IPS4 rep=rep2\ track wgEncodeFsuRepliChipIpshfib2ips4WaveSignalRep2\ type bigWig -2.065338 2.065192\ wgEncodeDukeAffyExonK562SimpleSignalRep3V2 K562 3 bigBed 6 + K562 Exon array Signal Rep 3 from ENCODE/Duke 0 14 46 0 184 150 127 219 1 0 0 expression 1 color 46,0,184\ longLabel K562 Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel K562 3\ subGroups cellType=t1K562 treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonK562SimpleSignalRep3V2\ type bigBed 6 +\ wgEncodeAffyRnaChipFiltTransfragsK562ChromatinTotal K562 chrm tot broadPeak K562 chromatin total Microarray Transfrags from ENCODE Affy/CSHL 3 14 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 chromatin total Microarray Transfrags from ENCODE Affy/CSHL\ noInherit on\ parent wgEncodeAffyRnaChipViewFiltTransfrags\ shortLabel K562 chrm tot\ subGroups view=FiltTransfrags cellType=t1K562 localization=fCHROMATIN rnaExtract=total\ track wgEncodeAffyRnaChipFiltTransfragsK562ChromatinTotal\ type broadPeak\ wgEncodeGisRnaPetK562ChromatinTotalMinusRawSigRep1 K562 chrm tot - 1 bigWig 1.000000 331367.000000 K562 chromatin total clone-based RNA PET Minus signal Rep 1 from ENCODE/GIS 2 14 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 chromatin total clone-based RNA PET Minus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel K562 chrm tot - 1\ subGroups view=v2MinusRawSignal cellType=aK562 cloned=Based localization=chromatin rnaExtract=total rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562ChromatinTotalMinusRawSigRep1\ type bigWig 1.000000 331367.000000\ wgEncodeUwTfbsK562InputStdRawRep1 K562 In Sg 1 bigWig 1.000000 13124.000000 K562 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 14 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig on\ shortLabel K562 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t1K562 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsK562InputStdRawRep1\ type bigWig 1.000000 13124.000000\ wgEncodeOpenChromFaireK562NabutSig K562 NaBu FAIR DS bigWig 0.000000 0.145600 K562 Na Butyrate FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 14 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 Na Butyrate FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel K562 NaBu FAIR DS\ subGroups view=SIG cellType=t1K562 treatment=NaBut\ track wgEncodeOpenChromFaireK562NabutSig\ type bigWig 0.000000 0.145600\ wgEncodeOpenChromDnaseK562NabutSig K562 NaBut DS bigWig 0.000000 1.365700 K562 NaBut DNaseI HS Density Signal from ENCODE/Duke 2 14 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 NaBut DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel K562 NaBut DS\ subGroups view=SIG cellType=t1K562 treatment=NABUT\ track wgEncodeOpenChromDnaseK562NabutSig\ type bigWig 0.000000 1.365700\ wgEncodeUwDnaseK562PkRep2 K562 Pk 2 narrowPeak K562 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 14 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks\ shortLabel K562 Pk 2\ subGroups view=Peaks cellType=t1K562 rep=rep2 treatment=None\ track wgEncodeUwDnaseK562PkRep2\ type narrowPeak\ wgEncodeUwRepliSeqK562S3PctSignalRep1 K562 S3 1 bigWig 1.000000 100.000000 K562 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 14 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel K562 S3 1\ subGroups view=v1PctSignal cellType=t1K562 phase=p4S3 rep=rep1\ track wgEncodeUwRepliSeqK562S3PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeSunyAlbanyGeneStK562SlbpRbpAssocRnaV2 K562 SLBP broadPeak K562 SLBP RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 14 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 SLBP RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt\ shortLabel K562 SLBP\ subGroups cellType=t1K562 factor=SLBP\ track wgEncodeSunyAlbanyGeneStK562SlbpRbpAssocRnaV2\ type broadPeak\ lincRNAsCTLymphNode LymphNode bed 5 + lincRNAs from lymphnode 1 14 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from lymphnode\ parent lincRNAsAllCellType on\ shortLabel LymphNode\ subGroups view=lincRNAsRefseqExp tissueType=lymphnode\ track lincRNAsCTLymphNode\ wgEncodeSydhHistoneMcf7H3k27me3bUcdPk MCF-7 H3K27me3 narrowPeak MCF-7 H3K27me3 Histone Modifications by ChIP-seq Peaks from ENCODE/SYDH 3 14 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 H3K27me3 Histone Modifications by ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks off\ shortLabel MCF-7 H3K27me3\ subGroups view=Peaks factor=H3K27me3B cellType=bMCF7 control=UCD treatment=NONE\ track wgEncodeSydhHistoneMcf7H3k27me3bUcdPk\ type narrowPeak\ wgEncodeGisChiaPetMcf7EraaSigRep1 MCF7 ERa Sig 1 bigWig 1.000000 973.000000 MCF-7 ERalpha a ChIA-PET Signal Rep 1 from ENCODE/GIS-Ruan 2 14 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 ERalpha a ChIA-PET Signal Rep 1 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetSignal off\ shortLabel MCF7 ERa Sig 1\ subGroups view=Signal factor=ERAA cellType=t2MCF7 rep=rep1\ track wgEncodeGisChiaPetMcf7EraaSigRep1\ type bigWig 1.000000 973.000000\ wgEncodeOpenChromSynthMedulloPk Medullo Syn Pk bed 9 + Medullo DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom 0 14 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Medullo DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom\ origAssembly hg19\ parent wgEncodeOpenChromSynth off\ shortLabel Medullo Syn Pk\ subGroups cellType=t3MEDULLO treatment=aNone\ track wgEncodeOpenChromSynthMedulloPk\ type bed 9 +\ uMassBrainHistoneSignalS11NeuP69yrsF NeuN+ 69yrs F bigWig UMMS Brain Histone H3K4me3 (NeuN+ D11) Gender-female Age-69 2 14 30 118 30 142 186 142 0 0 0 regulation 0 color 30,118,30\ longLabel UMMS Brain Histone H3K4me3 (NeuN+ D11) Gender-female Age-69\ parent uMassBrainHistoneViewSignal\ shortLabel NeuN+ 69yrs F\ subGroups view=Signal donor=l_11 cellType=norm sex=female age=c_old\ track uMassBrainHistoneSignalS11NeuP69yrsF\ type bigWig\ polyASeqSitesMaqcUhr2Rev PolyA-Seq MaqcUhr2 bigWig 0.200000 16088.179688 Poly(A)-tail sequencing of MAQC UHR (replicate 2) from Merck (Rev strand) 2 14 0 0 0 127 127 127 0 0 0 rna 0 color 0,0,0\ longLabel Poly(A)-tail sequencing of MAQC UHR (replicate 2) from Merck (Rev strand)\ parent polyASeqSitesSignalView\ shortLabel PolyA-Seq MaqcUhr2\ subGroups view=Signal tissType=MaqcUhr2 strand=rev\ track polyASeqSitesMaqcUhr2Rev\ type bigWig 0.200000 16088.179688\ burgeRnaSeqGemMapperAlignTestes RNA-seq Testes bed 12 Burge Lab RNA-seq 32mer Reads from Testes 1 14 12 12 120 133 133 187 0 0 0 expression 1 longLabel Burge Lab RNA-seq 32mer Reads from Testes\ parent burgeRnaSeqGemMapperAlignViewAlignments off\ shortLabel RNA-seq Testes\ subGroups view=Alignments tissueType=testes\ track burgeRnaSeqGemMapperAlignTestes\ SeqCap-EZ_MedExome_hg19_capture_targets SeqCap EZ Med P bigBed 4 Roche - SeqCap EZ MedExome Capture Probe Footprint 0 14 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/sorted-SeqCap_EZ_MedExome_hg19_capture_targets.bb\ color 100,143,255\ longLabel Roche - SeqCap EZ MedExome Capture Probe Footprint\ parent exomeProbesets off\ shortLabel SeqCap EZ Med P\ track SeqCap-EZ_MedExome_hg19_capture_targets\ type bigBed 4\ epdNew EPDnew Promoters bigBed 8 Promoters from EPDnew human version 006 0 14.3 50 50 200 152 152 227 0 0 0 https://epd.epfl.ch/cgi-bin/get_doc?db=mmEpdNew&format=genome&entry=$$

Description

\ \

\ These tracks represent the experimentally validated promoters generated by \ the Eukaryotic Promoter Database.\

\ \

Display Conventions and Configuration

\ \

\ Each item in the track is a representation of the promoter sequence identified by EPD. The\ "thin" part of the element represents the 49 bp upstream of the annotated transcription\ start site (TSS) whereas the "thick" part represents the TSS plus 10 bp downstream. The\ relative position of the thick and thin parts define the orientation of the promoter.

\

\ Note that the EPD team has created a public track hub containing\ promoter and supporting annotations for human, mouse, and other vertebrate and model organism\ genomes.

\ \

Methods

\

\ Briefly, gene transcript coordinates were obtained from multiple sources (HGNC, GENCODE, Ensembl,\ RefSeq) and validated using data from CAGE and RAMPAGE experimental studies obtained from FANTOM 5,\ UCSC, and ENCODE. Peak calling, clustering and filtering based on relative expression were applied\ to identify the most expressed promoters and those present in the largest number of samples.

\

\ For the methodology and principles used by EPD to predict TSSs, refer to Dreos et al.\ (2013) in the References section below. A more detailed description of how this data was\ generated can be found at the following links:\ \

\

\ \

Credits

\ \

\ Data was generated by the EPD team at the \ Swiss Institute of Bioinformatics. \ For inquiries, contact the EPD team using this on-line form \ or email \ \ philipp.\ bucher@epfl.\ ch\ \ .\

\ \

References

\ \

\ Dreos R, Ambrosini G, Perier RC, Bucher P.\ \ EPD and EPDnew, high-quality promoter resources in the\ next-generation sequencing era. Nucleic Acids\ Res. 2013 Jan 1;41(D1):D157-64. PMID: 23193273.\

\ \ expression 1 bedNameLabel Promoter ID\ bigDataUrl /gbdb/hg19/bbi/epdNewHuman006.hg19.bb\ color 50,50,200\ dataVersion EPDNew Version 006 (May 2018)\ exonArrows on\ group expression\ html ../../epdNewPromoter\ longLabel Promoters from EPDnew human version 006\ priority 14.3\ shortLabel EPDnew Promoters\ track epdNew\ type bigBed 8\ url https://epd.epfl.ch/cgi-bin/get_doc?db=mmEpdNew&format=genome&entry=$$\ urlLabel EPDnew link:\ visibility hide\ chainAllMis1 American alligator Chain chain allMis1 American alligator (Aug. 2012 (allMis0.2/allMis1)) Chained Alignments 3 15 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel American alligator (Aug. 2012 (allMis0.2/allMis1)) Chained Alignments\ otherDb allMis1\ parent vertebrateChainNetViewchain off\ shortLabel American alligator Chain\ subGroups view=chain species=s025 clade=c02\ track chainAllMis1\ type chain allMis1\ chainCanFam3 Dog Chain chain canFam3 Dog (Sep. 2011 (Broad CanFam3.1/canFam3)) Chained Alignments 3 15 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Dog (Sep. 2011 (Broad CanFam3.1/canFam3)) Chained Alignments\ otherDb canFam3\ parent placentalChainNetViewchain off\ shortLabel Dog Chain\ subGroups view=chain species=s034d clade=c01\ track chainCanFam3\ type chain canFam3\ wgEncodeUwTfbsA549CtcfStdHotspotsRep1 A549 CTCF Ht 1 broadPeak A549 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 15 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel A549 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t2A549 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsA549CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeHaibRnaSeqA549Dex500pmRawRep2 A549 DEX500pM 2 bigWig 0.108844 1106.400024 A549 DEX 1 hr 500 pM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 15 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 DEX 1 hr 500 pM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel A549 DEX500pM 2\ subGroups view=RawSignal cellType=t2A549 treatment=DEX500PM rep=rep2\ track wgEncodeHaibRnaSeqA549Dex500pmRawRep2\ type bigWig 0.108844 1106.400024\ encTfChipPkENCFF266ORV A549 ESRRA narrowPeak Transcription Factor ChIP-seq Peaks of ESRRA in A549 from ENCODE 3 (ENCFF266ORV) 1 15 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESRRA in A549 from ENCODE 3 (ENCFF266ORV)\ parent encTfChipPk off\ shortLabel A549 ESRRA\ subGroups cellType=A549 factor=ESRRA\ track encTfChipPkENCFF266ORV\ agilentCgh1x244k Ag CGH 1x244k bed 4 . Agilent SurePrint HD Human CGH Microarray 1x244K AMADID 014693 0 15 255 128 0 255 191 127 0 0 0 varRep 1 color 255,128,0\ longLabel Agilent SurePrint HD Human CGH Microarray 1x244K AMADID 014693\ parent genotypeArrays\ priority 15\ shortLabel Ag CGH 1x244k\ track agilentCgh1x244k\ type bed 4 .\ wgEncodeUwAffyExonArrayAg04449SimpleSignalRep2 AG04449 2 broadPeak AG04449 Exon array Signal Rep 2 from ENCODE/UW 0 15 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG04449 Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel AG04449 2\ subGroups cellType=t3AG04449 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayAg04449SimpleSignalRep2\ type broadPeak\ wgEncodeHaibGenotypeAg09309RegionsRep1 AG09309 1 bed 9 + AG09309 Copy number variants Replicate 1 from ENCODE/HAIB 0 15 0 0 0 127 127 127 0 0 0 varRep 1 longLabel AG09309 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel AG09309 1\ subGroups cellType=t3AG09309 obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeAg09309RegionsRep1\ type bed 9 +\ wgEncodeHaibMethyl450Ag10803SitesRep1 AG10803 bed 9 AG10803 Methylation 450K Bead Array from ENCODE/HAIB 1 15 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel AG10803\ subGroups cellType=t3AG10803 obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450Ag10803SitesRep1\ type bed 9\ wgEncodeAwgDnaseUwAg10803UniPk AG10803 DNase narrowPeak AG10803 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 15 0 0 0 127 127 127 1 0 0 regulation 1 longLabel AG10803 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel AG10803 DNase\ subGroups tier=a30 cellType=AG10803\ track wgEncodeAwgDnaseUwAg10803UniPk\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_ctss_fwd AorticSmsToFgf2_00hr30minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_forward 0 15 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep3%20%28LK9%29.CNhs13569.12840-137B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12840-137B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_tpm_fwd AorticSmsToFgf2_00hr30minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_forward 1 15 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep3%20%28LK9%29.CNhs13569.12840-137B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12840-137B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5\ urlLabel FANTOM5 Details:\ gtexEqtlTissueBrainNucAccumbens brainNucAccumbens bed 9 + Expression QTL in Brain_Nucleus_accumbens_basal_ganglia from GTEx V6 0 15 238 238 0 246 246 127 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 238,238,0\ idInUrlSql select gene from gtexEqtlTissueBrainNucAccumbens where name='%s'\ longLabel Expression QTL in Brain_Nucleus_accumbens_basal_ganglia from GTEx V6\ parent gtexEqtlTissue on\ shortLabel brainNucAccumbens\ track gtexEqtlTissueBrainNucAccumbens\ dhcHumDerDenAncCcdsUtr3FixedDbSnp CC Utr3 FxS bigBed 4 + Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: CCDS 3' UTR 3 15 0 0 200 127 127 227 0 0 0 denisova 1 color 0,0,200\ longLabel Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: CCDS 3' UTR\ parent dhcHumDerDenAncCcds\ shortLabel CC Utr3 FxS\ subGroups view=Ccds subset=CcdsUtr3 freq=FixedDbSnp\ track dhcHumDerDenAncCcdsUtr3FixedDbSnp\ pgNA12878 CEU daught '2878 pgSnp CEU Trio Daughter NA12878 (1000 Genomes Project) 0 15 128 64 0 191 159 127 0 0 0 varRep 1 color 128,64,0\ longLabel CEU Trio Daughter NA12878 (1000 Genomes Project)\ origAssembly hg18\ parent pgSnp1kG\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel CEU daught '2878\ subGroups view=B_1kG id=BF_12878 type=SNP\ track pgNA12878\ wgEncodeAwgTfbsUwGm12878CtcfUniPk GM12878 CTCF w narrowPeak GM12878 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 15 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 CTCF w\ subGroups tier=a10 cellType=a10GM12878 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwGm12878CtcfUniPk\ wgEncodeBroadHistoneGm12878H3k9me3StdPk GM12878 H3K9m3 broadPeak GM12878 H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 15 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel GM12878 H3K9m3\ subGroups view=Peaks factor=H3K09ME3 cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H3k9me3StdPk\ type broadPeak\ wgEncodeSunyRipSeqGm12878RipinputAlnRep1 GM12878 Input 1 bam GM12878 RIP-Input RIP-seq Alignments Rep 1 from ENCODE/SUNY 0 15 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 RIP-Input RIP-seq Alignments Rep 1 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewAlignments off\ shortLabel GM12878 Input 1\ subGroups view=Alignments factor=ripInput cellType=t1GM12878 rep=rep1\ track wgEncodeSunyRipSeqGm12878RipinputAlnRep1\ type bam\ wgEncodeCaltechRnaSeqGm12878R1x75dTh1014UPlusRawRep2V4 GM78 1x75D + 2 bigWig 0.025000 101261.335938 GM12878 single read RNA-seq Plus Signal Rep 2 from ENCODE/Caltech 2 15 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 single read RNA-seq Plus Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewPlusSignal\ shortLabel GM78 1x75D + 2\ subGroups view=PlusSignal cellType=t1GM12878 readType=r1x75D insertLength=ilNa rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12878R1x75dTh1014UPlusRawRep2V4\ type bigWig 0.025000 101261.335938\ wgEncodeHaibTfbsGm12878Bcl11aPcr1xPkRep2 GM78 BCL PCR1 2 broadPeak GM12878 BCL11A PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 15 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 BCL11A PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 BCL PCR1 2\ subGroups view=Peaks factor=BCL11A cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Bcl11aPcr1xPkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqGm12878CellPapPlusRawSigRep1 GM78 cel pA+ + 1 bigWig 1.000000 1276217.000000 GM12878 whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 15 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig on\ shortLabel GM78 cel pA+ + 1\ subGroups view=PlusSignal cellType=t1GM12878 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878CellPapPlusRawSigRep1\ type bigWig 1.000000 1276217.000000\ wgEncodeSydhTfbsGm12878Ctcfsc15914c20StdPk GM78 CTCF Std narrowPeak GM12878 CTCF Standard ChIP-seq Peaks from ENCODE/SYDH 3 15 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 CTCF Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 CTCF Std\ subGroups view=Peaks factor=CTCFb cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Ctcfsc15914c20StdPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapPlusRawRep2 GM78 cyto TAP + 2 bigWig 1.000000 4329828.000000 GM12878 TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 15 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel GM78 cyto TAP + 2\ subGroups view=PlusSignal cellType=t1GM12878 localization=CYTOSOL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapPlusRawRep2\ type bigWig 1.000000 4329828.000000\ wgEncodeUwHistoneGm12878H3k36me3StdRawRep1 GM78 H3K36M3 Sg 1 bigWig 1.000000 4249.000000 GM12878 H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 15 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig on\ shortLabel GM78 H3K36M3 Sg 1\ subGroups view=zRSig factor=H3K36ME3 cellType=t1GM12878 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12878H3k36me3StdRawRep1\ type bigWig 1.000000 4249.000000\ wgEncodeRikenCageGm12878NucleolusTotalAln GM78 nlus tot A 1 bam GM12878 nucleolus total CAGE Alignments Rep 1 from ENCODE/RIKEN 0 15 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleolus total CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel GM78 nlus tot A 1\ subGroups view=Alignments cellType=t1GM12878 localization=nucleolus rnaExtract=total rep=rep0 rank=rank1\ track wgEncodeRikenCageGm12878NucleolusTotalAln\ type bam\ wgEncodeOpenChromChipH1hescCtcfSig H1-hESC CTCF DS bigWig 0.000000 10.491300 H1-hESC CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 15 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal\ shortLabel H1-hESC CTCF DS\ subGroups treatment=AANONE view=SIG factor=CTCF cellType=t1H1HESC\ track wgEncodeOpenChromChipH1hescCtcfSig\ type bigWig 0.000000 10.491300\ hapMapRelease24YRIRecombMap HapMap YRI bigWig 0.0 72.21 HapMap Release 24 YRI recombination map 0 15 110 110 110 182 182 182 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 0 color 110,110,110\ configurable on\ longLabel HapMap Release 24 YRI recombination map\ parent otherMaps\ priority 15\ shortLabel HapMap YRI\ subGroups view=other\ track hapMapRelease24YRIRecombMap\ type bigWig 0.0 72.21\ wgEncodeAwgSegmentationSegwayHepg2 HepG2 Segway bed 9 . HepG2 Genome Segmentation by Segway from ENCODE/Analysis 0 15 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HepG2 Genome Segmentation by Segway from ENCODE/Analysis\ parent wgEncodeAwgSegmentation off\ shortLabel HepG2 Segway\ subGroups tier=t2 cellType=t2HEPG2 method=Segway\ track wgEncodeAwgSegmentationSegwayHepg2\ type bed 9 .\ wgEncodeUwDgfHepg2Sig HepG2 Sig bigWig 1.000000 23188.000000 HepG2 DNaseI DGF Per-base Signal from ENCODE/UW 2 15 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal on\ shortLabel HepG2 Sig\ subGroups view=Signal cellType=t2HEPG2 treatment=aNONE rep=rep1\ track wgEncodeUwDgfHepg2Sig\ type bigWig 1.000000 23188.000000\ wgEncodeFsuRepliChipIpshfib2ips5WaveSignalRep1 iPS_hFib2_iPS5 1 bigWig -1.625592 1.751924 iPS hFib2 iPS5 Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU 0 15 0 0 0 127 127 127 0 0 0 regulation 0 longLabel iPS hFib2 iPS5 Repli-chip Wavelet-smoothed Signal Rep 1 from ENCODE/FSU\ parent wgEncodeFsuRepliChip off\ shortLabel iPS_hFib2_iPS5 1\ subGroups view=WaveSignal cellType=t3IPSHFIB2IPS5 rep=rep1\ track wgEncodeFsuRepliChipIpshfib2ips5WaveSignalRep1\ type bigWig -1.625592 1.751924\ wgEncodeDukeAffyExonK562SimpleSignalRep4 K562 4 bigBed 6 + K562 Exon array Signal Rep 4 from ENCODE/Duke 0 15 46 0 184 150 127 219 1 0 0 expression 1 color 46,0,184\ longLabel K562 Exon array Signal Rep 4 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel K562 4\ subGroups cellType=t1K562 treatment=zNONE rep=rep4\ track wgEncodeDukeAffyExonK562SimpleSignalRep4\ type bigBed 6 +\ wgEncodeGisRnaPetK562ChromatinTotalPlusRawSigRep1 K562 chrm tot + 1 bigWig 1.000000 9878.000000 K562 chromatin total clone-based RNA PET Plus signal Rep 1 from ENCODE/GIS 2 15 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 chromatin total clone-based RNA PET Plus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel K562 chrm tot + 1\ subGroups view=v2PlusRawSignal cellType=aK562 cloned=Based localization=chromatin rnaExtract=total rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562ChromatinTotalPlusRawSigRep1\ type bigWig 1.000000 9878.000000\ wgEncodeOpenChromFaireK562NabutBaseOverlapSignal K562 NaBu FAIR OS bigWig 0.000000 1560.000000 K562 Na Butyrate FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 15 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 Na Butyrate FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel K562 NaBu FAIR OS\ subGroups view=SIGBO cellType=t1K562 treatment=NaBut\ track wgEncodeOpenChromFaireK562NabutBaseOverlapSignal\ type bigWig 0.000000 1560.000000\ wgEncodeOpenChromDnaseK562NabutBaseOverlapSignal K562 NaBut OS bigWig 0.000000 352.000000 K562 NaBut DNaseI HS Overlap Signal from ENCODE/Duke 2 15 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 NaBut DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel K562 NaBut OS\ subGroups view=SIGBO cellType=t1K562 treatment=NABUT\ track wgEncodeOpenChromDnaseK562NabutBaseOverlapSignal\ type bigWig 0.000000 352.000000\ wgEncodeAffyRnaChipFiltTransfragsK562NucleolusTotal K562 nlus tot broadPeak K562 nucleolus total Microarray Transfrags from ENCODE Affy/CSHL 3 15 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleolus total Microarray Transfrags from ENCODE Affy/CSHL\ parent wgEncodeAffyRnaChipViewFiltTransfrags\ shortLabel K562 nlus tot\ subGroups view=FiltTransfrags cellType=t1K562 localization=gNUCLEOLUS rnaExtract=total\ track wgEncodeAffyRnaChipFiltTransfragsK562NucleolusTotal\ type broadPeak\ wgEncodeUwRepliSeqK562S4PctSignalRep1 K562 S4 1 bigWig 1.000000 100.000000 K562 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 15 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel K562 S4 1\ subGroups view=v1PctSignal cellType=t1K562 phase=p5S4 rep=rep1\ track wgEncodeUwRepliSeqK562S4PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeUwDnaseK562RawRep2 K562 Sg 2 bigWig 1.000000 47721.000000 K562 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 15 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw\ shortLabel K562 Sg 2\ subGroups view=zRSig cellType=t1K562 rep=rep2 treatment=None\ track wgEncodeUwDnaseK562RawRep2\ type bigWig 1.000000 47721.000000\ wgEncodeSunyAlbanyGeneStK562T7tagRbpAssocRnaV2 K562 T7Tag broadPeak K562 T7Tag RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 15 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 T7Tag RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt off\ shortLabel K562 T7Tag\ subGroups cellType=t1K562 factor=T7Tag\ track wgEncodeSunyAlbanyGeneStK562T7tagRbpAssocRnaV2\ type broadPeak\ wgEncodeHaibMethylRrbsMcf7DukeSitesRep1 MCF-7 1 bed 9 + MCF-7 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 15 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel MCF-7 1\ subGroups cellType=t2MCF7 obtainedBy=DUKE treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsMcf7DukeSitesRep1\ type bed 9 +\ wgEncodeSydhHistoneMcf7H3k27me3bUcdSig MCF-7 H3K27me3 bigWig 1.000000 10625.000000 MCF-7 H3K27me3 Histone Modifications by ChIP-seq Signal from ENCODE/SYDH 2 15 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 H3K27me3 Histone Modifications by ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel MCF-7 H3K27me3\ subGroups view=Signal factor=H3K27me3B cellType=bMCF7 control=UCD treatment=NONE\ track wgEncodeSydhHistoneMcf7H3k27me3bUcdSig\ type bigWig 1.000000 10625.000000\ wgEncodeGisChiaPetMcf7EraaInteractionsRep2 MCF7 ERa Int 2 bed 12 MCF-7 ERalpha a ChIA-PET Interactions Rep 2 from ENCODE/GIS-Ruan 2 15 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 ERalpha a ChIA-PET Interactions Rep 2 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetInteractions off\ shortLabel MCF7 ERa Int 2\ subGroups view=Interactions factor=ERAA cellType=t2MCF7 rep=rep2\ track wgEncodeGisChiaPetMcf7EraaInteractionsRep2\ type bed 12\ uMassBrainHistoneSignalS6NeuM4pt7yrsM NeuN- 4.7yrs M bigWig UMMS Brain Histone H3K4me3 (NeuN- D6) Gender-male Age-4.7 2 15 0 0 194 127 127 224 0 0 0 regulation 0 color 0,0,194\ longLabel UMMS Brain Histone H3K4me3 (NeuN- D6) Gender-male Age-4.7\ parent uMassBrainHistoneViewSignal\ shortLabel NeuN- 4.7yrs M\ subGroups view=Signal donor=g_6 cellType=neun sex=male age=b_young\ track uMassBrainHistoneSignalS6NeuM4pt7yrsM\ type bigWig\ wgEncodeOpenChromSynthNhekPk NHEK Syn Pk bed 9 + NHEK DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom 0 15 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHEK DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom\ parent wgEncodeOpenChromSynth off\ shortLabel NHEK Syn Pk\ subGroups cellType=t3NHEK treatment=aNone\ track wgEncodeOpenChromSynthNhekPk\ type bed 9 +\ lincRNAsCTOvary Ovary bed 5 + lincRNAs from ovary 1 15 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from ovary\ parent lincRNAsAllCellType on\ shortLabel Ovary\ subGroups view=lincRNAsRefseqExp tissueType=ovary\ track lincRNAsCTOvary\ polyASeqSitesMuscleFwd PolyA-Seq Muscle bigWig 0.210000 37201.500000 Poly(A)-tail sequencing of Muscle from Merck (Fwd strand) 2 15 153 51 51 204 153 153 0 0 0 rna 0 color 153,51,51\ longLabel Poly(A)-tail sequencing of Muscle from Merck (Fwd strand)\ parent polyASeqSitesSignalView\ shortLabel PolyA-Seq Muscle\ subGroups view=Signal tissType=Muscle strand=fwd\ track polyASeqSitesMuscleFwd\ type bigWig 0.210000 37201.500000\ burgeRnaSeqGemMapperAlignBT474AllRawSignal RNA-seq BT474 Sig bedGraph 4 Burge Lab RNA-seq 32mer Reads from BT474 Breast Tumour Cell Line, Raw Signal 2 15 46 0 184 150 127 219 0 0 0 expression 0 longLabel Burge Lab RNA-seq 32mer Reads from BT474 Breast Tumour Cell Line, Raw Signal\ parent burgeRnaSeqGemMapperAlignViewRawSignal off\ shortLabel RNA-seq BT474 Sig\ subGroups view=RawSignal tissueType=BT474\ track burgeRnaSeqGemMapperAlignBT474AllRawSignal\ SeqCap-EZ_MedExome_hg19_empirical_targets SeqCap EZ Med T bigBed 4 Roche - SeqCap EZ MedExome Empirical Target Regions 0 15 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/sorted_SeqCap_EZ_MedExome_hg19_empirical_targets.bb\ color 100,143,255\ longLabel Roche - SeqCap EZ MedExome Empirical Target Regions\ parent exomeProbesets off\ shortLabel SeqCap EZ Med T\ track SeqCap-EZ_MedExome_hg19_empirical_targets\ type bigBed 4\ netAllMis1 American alligator Net netAlign allMis1 chainAllMis1 American alligator (Aug. 2012 (allMis0.2/allMis1)) Alignment Net 1 16 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel American alligator (Aug. 2012 (allMis0.2/allMis1)) Alignment Net\ otherDb allMis1\ parent vertebrateChainNetViewnet off\ shortLabel American alligator Net\ subGroups view=net species=s025 clade=c02\ track netAllMis1\ type netAlign allMis1 chainAllMis1\ netCanFam3 Dog Net netAlign canFam3 chainCanFam3 Dog (Sep. 2011 (Broad CanFam3.1/canFam3)) Alignment Net 1 16 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Dog (Sep. 2011 (Broad CanFam3.1/canFam3)) Alignment Net\ otherDb canFam3\ parent placentalChainNetViewnet on\ shortLabel Dog Net\ subGroups view=net species=s034d clade=c01\ track netCanFam3\ type netAlign canFam3 chainCanFam3\ wgEncodeDukeAffyExonA549SimpleSignalRep1 A549 1 bigBed 6 + A549 Exon array Signal Rep 1 from ENCODE/Duke 0 16 0 0 0 127 127 127 1 0 0 expression 1 longLabel A549 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel A549 1\ subGroups cellType=t2A549 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonA549SimpleSignalRep1\ type bigBed 6 +\ wgEncodeUwTfbsA549CtcfStdPkRep1 A549 CTCF Pk 1 narrowPeak A549 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 16 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel A549 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t2A549 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsA549CtcfStdPkRep1\ type narrowPeak\ wgEncodeHaibRnaSeqA549Dex500pmAlnRep2 A549 DEX500pM 2 bam A549 DEX 1 hr 500 pM RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 16 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 DEX 1 hr 500 pM RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel A549 DEX500pM 2\ subGroups view=Alignments cellType=t2A549 treatment=DEX500PM rep=rep2\ track wgEncodeHaibRnaSeqA549Dex500pmAlnRep2\ type bam\ encTfChipPkENCFF297HAT A549 ETS1 narrowPeak Transcription Factor ChIP-seq Peaks of ETS1 in A549 from ENCODE 3 (ENCFF297HAT) 1 16 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ETS1 in A549 from ENCODE 3 (ENCFF297HAT)\ parent encTfChipPk off\ shortLabel A549 ETS1\ subGroups cellType=A549 factor=ETS1\ track encTfChipPkENCFF297HAT\ wgEncodeOpenChromFaireA549Pk A549 FAIRE Pk narrowPeak A549 FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 16 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel A549 FAIRE Pk\ subGroups view=Peaks cellType=t2A549 treatment=AANONE\ track wgEncodeOpenChromFaireA549Pk\ type narrowPeak\ wgEncodeUwDnaseA549HotspotsRep1 A549 Ht 1 broadPeak A549 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 16 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel A549 Ht 1\ subGroups view=Hot cellType=t2A549 rep=rep1 treatment=None\ track wgEncodeUwDnaseA549HotspotsRep1\ type broadPeak\ agilentCgh2x105k Ag CGH 2x105k bed 4 . Agilent SurePrint HD Human CGH Microarray 2x105K AMADID 014698 0 16 0 128 0 127 191 127 0 0 0 varRep 1 color 0,128,0\ longLabel Agilent SurePrint HD Human CGH Microarray 2x105K AMADID 014698\ parent genotypeArrays\ priority 16\ shortLabel Ag CGH 2x105k\ track agilentCgh2x105k\ type bed 4 .\ wgEncodeUwAffyExonArrayAg04450SimpleSignalRep1 AG04450 1 broadPeak AG04450 Exon array Signal Rep 1 from ENCODE/UW 0 16 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG04450 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel AG04450 1\ subGroups cellType=t3AG04450 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayAg04450SimpleSignalRep1\ type broadPeak\ wgEncodeHaibGenotypeAg09319RegionsRep2 AG09319 1 bed 9 + AG09319 Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB 0 16 0 0 0 127 127 127 0 0 0 varRep 1 longLabel AG09319 Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel AG09319 1\ subGroups cellType=t3AG09319 obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeAg09319RegionsRep2\ type bed 9 +\ wgEncodeAwgDnaseUwAoafUniPk AoAF DNase narrowPeak AoAF DNaseI HS Uniform Peaks from ENCODE/Analysis 1 16 0 0 0 127 127 127 1 0 0 regulation 1 longLabel AoAF DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel AoAF DNase\ subGroups tier=a30 cellType=AoAF\ track wgEncodeAwgDnaseUwAoafUniPk\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_ctss_rev AorticSmsToFgf2_00hr30minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_reverse 0 16 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep3%20%28LK9%29.CNhs13569.12840-137B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12840-137B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_tpm_rev AorticSmsToFgf2_00hr30minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_reverse 1 16 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep3%20%28LK9%29.CNhs13569.12840-137B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12840-137B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5\ urlLabel FANTOM5 Details:\ wgEncodeHaibMethyl450AosmcSitesRep1 AoSMC bed 9 AoSMC Methylation 450K Bead Array from ENCODE/HAIB 1 16 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoSMC Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel AoSMC\ subGroups cellType=t3AOSMC obtainedBy=DUKE treatment=zNONE\ track wgEncodeHaibMethyl450AosmcSitesRep1\ type bed 9\ gtexEqtlTissueBrainPutamen brainPutamen bed 9 + Expression QTL in Brain_Putamen_basal_ganglia from GTEx V6 0 16 238 238 0 246 246 127 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 238,238,0\ idInUrlSql select gene from gtexEqtlTissueBrainPutamen where name='%s'\ longLabel Expression QTL in Brain_Putamen_basal_ganglia from GTEx V6\ parent gtexEqtlTissue on\ shortLabel brainPutamen\ track gtexEqtlTissueBrainPutamen\ dhcHumDerDenAncCcdsUtr3HighFreq CC Utr3 HiF bigBed 4 + Modern Human Derived (HighFreq), Denisova Ancestral: CCDS 3' UTR 3 16 0 0 200 127 127 227 0 0 0 denisova 1 color 0,0,200\ longLabel Modern Human Derived (HighFreq), Denisova Ancestral: CCDS 3' UTR\ parent dhcHumDerDenAncCcds\ shortLabel CC Utr3 HiF\ subGroups view=Ccds subset=CcdsUtr3 freq=HighFreq\ track dhcHumDerDenAncCcdsUtr3HighFreq\ pgNA12891 CEU father '2891 pgSnp CEU Trio Father NA12891 (1000 Genomes Project) 0 16 128 64 0 191 159 127 0 0 0 varRep 1 color 128,64,0\ longLabel CEU Trio Father NA12891 (1000 Genomes Project)\ origAssembly hg18\ parent pgSnp1kG\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel CEU father '2891\ subGroups view=B_1kG id=BG_12891 type=SNP\ track pgNA12891\ wgEncodeAwgTfbsSydhGm12878E2f4IggmusUniPk GM12878 E2F4 narrowPeak GM12878 TFBS Uniform Peaks of E2F4 from ENCODE/Stanford/Analysis 1 16 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of E2F4 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 E2F4\ subGroups tier=a10 cellType=a10GM12878 factor=E2F4 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878E2f4IggmusUniPk\ wgEncodeBroadHistoneGm12878H3k9me3StdSig GM12878 H3K9m3 bigWig 0.040000 44431.519531 GM12878 H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 16 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel GM12878 H3K9m3\ subGroups view=Signal factor=H3K09ME3 cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H3k9me3StdSig\ type bigWig 0.040000 44431.519531\ wgEncodeSunyRipSeqGm12878RipinputAlnRep2 GM12878 Input 2 bam GM12878 RIP-Input RIP-seq Alignments Rep 2 from ENCODE/SUNY 0 16 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 RIP-Input RIP-seq Alignments Rep 2 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewAlignments off\ shortLabel GM12878 Input 2\ subGroups view=Alignments factor=ripInput cellType=t1GM12878 rep=rep2\ track wgEncodeSunyRipSeqGm12878RipinputAlnRep2\ type bam\ wgEncodeCaltechRnaSeqGm12878R1x75dSplicesRep1V2 GM78 1x75D Sp 1 bam GM12878 single read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 16 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 single read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel GM78 1x75D Sp 1\ subGroups view=Splices cellType=t1GM12878 insertLength=ilNa readType=r1x75D rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12878R1x75dSplicesRep1V2\ type bam\ wgEncodeHaibTfbsGm12878Bcl11aPcr1xRawRep2 GM78 BCL11A 2 bigWig 0.159611 359.764008 GM12878 BCL11A PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 16 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 BCL11A PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 BCL11A 2\ subGroups view=RawSignal factor=BCL11A cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Bcl11aPcr1xRawRep2\ type bigWig 0.159611 359.764008\ wgEncodeCshlLongRnaSeqGm12878CellPapPlusRawSigRep2 GM78 cel pA+ + 2 bigWig 1.000000 1512808.000000 GM12878 whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 16 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig on\ shortLabel GM78 cel pA+ + 2\ subGroups view=PlusSignal cellType=t1GM12878 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878CellPapPlusRawSigRep2\ type bigWig 1.000000 1512808.000000\ wgEncodeSydhTfbsGm12878Ctcfsc15914c20StdSig GM78 CTCF Std bigWig 1.000000 7505.000000 GM12878 CTCF Standard ChIP-seq Signal from ENCODE/SYDH 2 16 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 CTCF Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 CTCF Std\ subGroups view=Signal factor=CTCFb cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Ctcfsc15914c20StdSig\ type bigWig 1.000000 7505.000000\ wgEncodeUwHistoneGm12878H3k36me3StdHotspotsRep2 GM78 H3K36M3 Ht 2 broadPeak GM12878 H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 16 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot on\ shortLabel GM78 H3K36M3 Ht 2\ subGroups view=Hot factor=H3K36ME3 cellType=t1GM12878 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm12878H3k36me3StdHotspotsRep2\ type broadPeak\ wgEncodeCshlShortRnaSeqGm12878NucleolusTapContigs GM78 nlus TAP C bed 6 GM12878 TAP-only nucleolus small RNA-seq Contigs from ENCODE/CSHL 2 16 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 TAP-only nucleolus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel GM78 nlus TAP C\ subGroups view=Contigs cellType=t1GM12878 localization=NUCLEOLUS protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqGm12878NucleolusTapContigs\ type bed 6\ wgEncodeRikenCageGm12878NucleusPamTssHmmV2 GM78 nucl pA- bed 6 GM12878 nucleus polyA - CAGE TSS HMM from ENCODE/RIKEN 3 16 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleus polyA - CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel GM78 nucl pA-\ subGroups view=TssHmm cellType=t1GM12878 localization=nucleus rnaExtract=pAM rep=Pooled rank=rankP\ track wgEncodeRikenCageGm12878NucleusPamTssHmmV2\ type bed 6\ wgEncodeOpenChromChipH1hescCtcfBaseOverlapSignal H1-hESC CTCF OS bigWig 0.000000 1248.000000 H1-hESC CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 16 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo\ shortLabel H1-hESC CTCF OS\ subGroups treatment=AANONE view=SIGBO factor=CTCF cellType=t1H1HESC\ track wgEncodeOpenChromChipH1hescCtcfBaseOverlapSignal\ type bigWig 0.000000 1248.000000\ wgEncodeAffyRnaChipFiltTransfragsHepg2CytosolLongnonpolya HepG2 cyto pA- broadPeak HepG2 cytosol polyA- Microarray Transfrags from ENCODE Affy/CSHL 3 16 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 cytosol polyA- Microarray Transfrags from ENCODE Affy/CSHL\ noInherit on\ parent wgEncodeAffyRnaChipViewFiltTransfrags off\ shortLabel HepG2 cyto pA-\ subGroups view=FiltTransfrags cellType=t2HEPG2 localization=bCYTOSOL rnaExtract=longNonPolyA\ track wgEncodeAffyRnaChipFiltTransfragsHepg2CytosolLongnonpolya\ type broadPeak\ wgEncodeUwDgfHepg2Raw HepG2 Raw bigWig 1.000000 102081.000000 HepG2 DNaseI DGF Raw Signal from ENCODE/UW 0 16 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw on\ shortLabel HepG2 Raw\ subGroups view=zRaw cellType=t2HEPG2 treatment=aNONE rep=rep1\ track wgEncodeUwDgfHepg2Raw\ type bigWig 1.000000 102081.000000\ wgEncodeAwgSegmentationChromhmmHuvec HUVEC ChromHMM bed 9 . HUVEC Genome Segmentation by ChromHMM from ENCODE/Analysis 0 16 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HUVEC Genome Segmentation by ChromHMM from ENCODE/Analysis\ parent wgEncodeAwgSegmentation off\ shortLabel HUVEC ChromHMM\ subGroups tier=t2 cellType=t2HUVEC method=ChromHMM\ track wgEncodeAwgSegmentationChromhmmHuvec\ type bed 9 .\ wgEncodeFsuRepliChipIpshfib2ips5WaveSignalRep2 iPS_hFib2_iPS5 2 bigWig -2.466517 2.850585 iPS hFib2 iPS5 Repli-chip Wavelet-smoothed Signal Rep 2 from ENCODE/FSU 0 16 0 0 0 127 127 127 0 0 0 regulation 0 longLabel iPS hFib2 iPS5 Repli-chip Wavelet-smoothed Signal Rep 2 from ENCODE/FSU\ parent wgEncodeFsuRepliChip off\ shortLabel iPS_hFib2_iPS5 2\ subGroups view=WaveSignal cellType=t3IPSHFIB2IPS5 rep=rep2\ track wgEncodeFsuRepliChipIpshfib2ips5WaveSignalRep2\ type bigWig -2.466517 2.850585\ wgEncodeGisRnaPetK562ChromatinTotalAlnRep1 K562 chrm tot A 1 bam K562 chromatin total clone-based RNA PET Alignments Rep 1 from ENCODE/GIS 0 16 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 chromatin total clone-based RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel K562 chrm tot A 1\ subGroups view=v3Alignments cellType=aK562 cloned=Based localization=chromatin rnaExtract=total rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562ChromatinTotalAlnRep1\ type bam\ wgEncodeUwRepliSeqK562G2PctSignalRep1 K562 G2 1 bigWig 1.000000 100.000000 K562 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 16 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel K562 G2 1\ subGroups view=v1PctSignal cellType=t1K562 phase=p6G2 rep=rep1\ track wgEncodeUwRepliSeqK562G2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeSunyAlbanyGeneStK562RipinputRbpAssocRnaV2 K562 RIP-Input broadPeak K562 RIP-Input RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 16 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 RIP-Input RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt off\ shortLabel K562 RIP-Input\ subGroups cellType=t1K562 factor=ripInput\ track wgEncodeSunyAlbanyGeneStK562RipinputRbpAssocRnaV2\ type broadPeak\ wgEncodeOpenChromDnaseK562Saha1u72hrPk K562 SAHA 72h Pk narrowPeak K562 SAHA 1 uM 72 h DNaseI HS Peaks from ENCODE/Duke 3 16 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 SAHA 1 uM 72 h DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel K562 SAHA 72h Pk\ subGroups view=Peaks cellType=t1K562 treatment=SAHA1U72HR\ track wgEncodeOpenChromDnaseK562Saha1u72hrPk\ type narrowPeak\ wgEncodeHaibMethylRrbsMcf7DukeSitesRep2 MCF-7 2 bed 9 + MCF-7 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 16 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel MCF-7 2\ subGroups cellType=t2MCF7 obtainedBy=DUKE treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsMcf7DukeSitesRep2\ type bed 9 +\ wgEncodeSydhHistoneMcf7H3k36me3bUcdPk MCF-7 H3K36me3 narrowPeak MCF-7 H3K36me3 Histone Modifications by ChIP-seq Peaks from ENCODE/SYDH 3 16 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 H3K36me3 Histone Modifications by ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks off\ shortLabel MCF-7 H3K36me3\ subGroups view=Peaks factor=H3K36me3B cellType=bMCF7 control=UCD treatment=NONE\ track wgEncodeSydhHistoneMcf7H3k36me3bUcdPk\ type narrowPeak\ wgEncodeGisChiaPetMcf7EraaSigRep2 MCF7 ERa Sig 2 bigWig 1.000000 1372.000000 MCF-7 ERalpha a ChIA-PET Signal Rep 2 from ENCODE/GIS-Ruan 2 16 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 ERalpha a ChIA-PET Signal Rep 2 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetSignal off\ shortLabel MCF7 ERa Sig 2\ subGroups view=Signal factor=ERAA cellType=t2MCF7 rep=rep2\ track wgEncodeGisChiaPetMcf7EraaSigRep2\ type bigWig 1.000000 1372.000000\ uMassBrainHistoneSignalS11NeuM69yrsF NeuN- 69yrs F bigWig UMMS Brain Histone H3K4me3 (NeuN- D11) Gender-female Age-69 2 16 0 0 117 127 127 186 0 0 0 regulation 0 color 0,0,117\ longLabel UMMS Brain Histone H3K4me3 (NeuN- D11) Gender-female Age-69\ parent uMassBrainHistoneViewSignal\ shortLabel NeuN- 69yrs F\ subGroups view=Signal donor=l_11 cellType=neun sex=female age=c_old\ track uMassBrainHistoneSignalS11NeuM69yrsF\ type bigWig\ wgEncodeOpenChromSynthPanisletsPk Pan Islets Syn Pk bed 9 + PanIslets DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom 0 16 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PanIslets DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom\ origAssembly hg19\ parent wgEncodeOpenChromSynth off\ shortLabel Pan Islets Syn Pk\ subGroups cellType=t3PANISLETS treatment=aNone\ track wgEncodeOpenChromSynthPanisletsPk\ type bed 9 +\ lincRNAsCTPlacenta_R Placenta_R bed 5 + lincRNAs from placenta_r 1 16 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from placenta_r\ parent lincRNAsAllCellType on\ shortLabel Placenta_R\ subGroups view=lincRNAsRefseqExp tissueType=placenta_r\ track lincRNAsCTPlacenta_R\ polyASeqSitesMuscleRev PolyA-Seq Muscle bigWig 0.210000 124901.000000 Poly(A)-tail sequencing of Muscle from Merck (Rev strand) 2 16 0 0 0 127 127 127 0 0 0 rna 0 color 0,0,0\ longLabel Poly(A)-tail sequencing of Muscle from Merck (Rev strand)\ parent polyASeqSitesSignalView\ shortLabel PolyA-Seq Muscle\ subGroups view=Signal tissType=Muscle strand=rev\ track polyASeqSitesMuscleRev\ type bigWig 0.210000 124901.000000\ burgeRnaSeqGemMapperAlignHMEAllRawSignal RNA-seq HME Sig bedGraph 4 Burge Lab RNA-seq 32mer Reads from HME (Human Mammary Epithelial) Cell Line, Raw Signal 2 16 46 0 184 150 127 219 0 0 0 expression 0 longLabel Burge Lab RNA-seq 32mer Reads from HME (Human Mammary Epithelial) Cell Line, Raw Signal\ parent burgeRnaSeqGemMapperAlignViewRawSignal off\ shortLabel RNA-seq HME Sig\ subGroups view=RawSignal tissueType=HME\ track burgeRnaSeqGemMapperAlignHMEAllRawSignal\ SeqCap-EZ_MedExomePlusMito_hg19_capture SeqCap EZ Med+Mito P bigBed 4 Roche - SeqCap EZ MedExome + Mito Capture Probe Footprint 0 16 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/sorted-SeqCap_EZ_MedExomePlusMito_hg19_capture_targets.bb\ color 100,143,255\ longLabel Roche - SeqCap EZ MedExome + Mito Capture Probe Footprint\ parent exomeProbesets on\ shortLabel SeqCap EZ Med+Mito P\ track SeqCap-EZ_MedExomePlusMito_hg19_capture\ type bigBed 4\ chainAnoCar2 Lizard Chain chain anoCar2 Lizard (May 2010 (Broad AnoCar2.0/anoCar2)) Chained Alignments 3 17 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Lizard (May 2010 (Broad AnoCar2.0/anoCar2)) Chained Alignments\ otherDb anoCar2\ parent vertebrateChainNetViewchain off\ shortLabel Lizard Chain\ subGroups view=chain species=s027 clade=c02\ track chainAnoCar2\ type chain anoCar2\ chainFelCat5 Cat Chain chain felCat5 Cat (Sep. 2011 (ICGSC Felis_catus 6.2/felCat5)) Chained Alignments 3 17 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Cat (Sep. 2011 (ICGSC Felis_catus 6.2/felCat5)) Chained Alignments\ otherDb felCat5\ parent placentalChainNetViewchain off\ shortLabel Cat Chain\ subGroups view=chain species=s039 clade=c01\ track chainFelCat5\ type chain felCat5\ wgEncodeDukeAffyExonA549SimpleSignalRep2 A549 2 bigBed 6 + A549 Exon array Signal Rep 2 from ENCODE/Duke 0 17 0 0 0 127 127 127 1 0 0 expression 1 longLabel A549 Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel A549 2\ subGroups cellType=t2A549 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonA549SimpleSignalRep2\ type bigBed 6 +\ wgEncodeUwTfbsA549CtcfStdRawRep1 A549 CTCF Sg 1 bigWig 1.000000 6710.000000 A549 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 17 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel A549 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t2A549 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsA549CtcfStdRawRep1\ type bigWig 1.000000 6710.000000\ wgEncodeHaibRnaSeqA549Dex5nmRawRep1 A549 DEX5nM 1 bigWig 0.149512 1237.839966 A549 DEX 1 hr 5 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 17 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 DEX 1 hr 5 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal on\ shortLabel A549 DEX5nM 1\ subGroups view=RawSignal cellType=t2A549 treatment=DEX5NM rep=rep1\ track wgEncodeHaibRnaSeqA549Dex5nmRawRep1\ type bigWig 0.149512 1237.839966\ wgEncodeOpenChromFaireA549Sig A549 FAIRE DS bigWig 0.000000 0.403700 A549 FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 17 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel A549 FAIRE DS\ subGroups view=SIG cellType=t2A549 treatment=AANONE\ track wgEncodeOpenChromFaireA549Sig\ type bigWig 0.000000 0.403700\ encTfChipPkENCFF374ZCG A549 FOSL2 narrowPeak Transcription Factor ChIP-seq Peaks of FOSL2 in A549 from ENCODE 3 (ENCFF374ZCG) 1 17 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOSL2 in A549 from ENCODE 3 (ENCFF374ZCG)\ parent encTfChipPk off\ shortLabel A549 FOSL2\ subGroups cellType=A549 factor=FOSL2\ track encTfChipPkENCFF374ZCG\ wgEncodeUwDnaseA549PkRep1 A549 Pk 1 narrowPeak A549 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 17 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel A549 Pk 1\ subGroups view=Peaks cellType=t2A549 rep=rep1 treatment=None\ track wgEncodeUwDnaseA549PkRep1\ type narrowPeak\ agilentCgh4x44k Ag CGH 4x44k bed 4 . Agilent SurePrint HD Human CGH Microarray 4x44K AMADID 014950 0 17 255 128 0 255 191 127 0 0 0 varRep 1 color 255,128,0\ longLabel Agilent SurePrint HD Human CGH Microarray 4x44K AMADID 014950\ parent genotypeArrays\ priority 17\ shortLabel Ag CGH 4x44k\ track agilentCgh4x44k\ type bed 4 .\ wgEncodeUwAffyExonArrayAg04450SimpleSignalRep2 AG04450 2 broadPeak AG04450 Exon array Signal Rep 2 from ENCODE/UW 0 17 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG04450 Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel AG04450 2\ subGroups cellType=t3AG04450 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayAg04450SimpleSignalRep2\ type broadPeak\ wgEncodeHaibGenotypeAg10803RegionsRep1 AG10803 1 bed 9 + AG10803 Copy number variants Replicate 1 from ENCODE/HAIB 0 17 0 0 0 127 127 127 0 0 0 varRep 1 longLabel AG10803 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel AG10803 1\ subGroups cellType=t3AG10803 obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeAg10803RegionsRep1\ type bed 9 +\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep1LK10_CNhs13343_ctss_fwd AorticSmsToFgf2_00hr45minBr1+ bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep1 (LK10)_CNhs13343_12645-134G8_forward 0 17 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12645-134G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep1%20%28LK10%29.CNhs13343.12645-134G8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep1 (LK10)_CNhs13343_12645-134G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12645-134G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep1LK10_CNhs13343_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12645-134G8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep1LK10_CNhs13343_tpm_fwd AorticSmsToFgf2_00hr45minBr1+ bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep1 (LK10)_CNhs13343_12645-134G8_forward 1 17 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12645-134G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep1%20%28LK10%29.CNhs13343.12645-134G8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep1 (LK10)_CNhs13343_12645-134G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12645-134G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep1LK10_CNhs13343_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12645-134G8\ urlLabel FANTOM5 Details:\ wgEncodeAwgDnaseDukeAosmcUniPk AoSMC DNase narrowPeak AoSMC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 17 0 0 0 127 127 127 1 0 0 regulation 1 longLabel AoSMC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel AoSMC DNase\ subGroups tier=a30 cellType=AoSMC\ track wgEncodeAwgDnaseDukeAosmcUniPk\ wgEncodeHaibMethyl450Be2cSitesRep1 BE2_C bed 9 BE2_C Methylation 450K Bead Array from ENCODE/HAIB 1 17 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BE2_C Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel BE2_C\ subGroups cellType=t3BE2C obtainedBy=HAIB treatment=zNONE\ track wgEncodeHaibMethyl450Be2cSitesRep1\ type bed 9\ gtexEqtlTissueBreastMamTissue breastMamTissue bed 9 + Expression QTL in Breast_Mammary_Tissue from GTEx V6 0 17 0 205 205 127 230 230 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 0,205,205\ idInUrlSql select gene from gtexEqtlTissueBreastMamTissue where name='%s'\ longLabel Expression QTL in Breast_Mammary_Tissue from GTEx V6\ parent gtexEqtlTissue on\ shortLabel breastMamTissue\ track gtexEqtlTissueBreastMamTissue\ dhcHumDerDenAncCcdsUtr5Fixed CC Utr5 Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: CCDS 5' UTR 3 17 0 0 200 127 127 227 0 0 0 denisova 1 color 0,0,200\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: CCDS 5' UTR\ parent dhcHumDerDenAncCcds\ shortLabel CC Utr5 Fxd\ subGroups view=Ccds subset=CcdsUtr5 freq=Fixed\ track dhcHumDerDenAncCcdsUtr5Fixed\ pgNA12892 CEU mother '2892 pgSnp CEU Trio Mother NA12892 (1000 Genomes Project) 0 17 128 64 0 191 159 127 0 0 0 varRep 1 color 128,64,0\ longLabel CEU Trio Mother NA12892 (1000 Genomes Project)\ origAssembly hg18\ parent pgSnp1kG\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel CEU mother '2892\ subGroups view=B_1kG id=BH_12892 type=SNP\ track pgNA12892\ wgEncodeAwgTfbsHaibGm12878Ebf1sc137065Pcr1xUniPk GM12878 EBF1 h narrowPeak GM12878 TFBS Uniform Peaks of EBF1_(SC-137065) from ENCODE/HudsonAlpha/Analysis 1 17 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of EBF1_(SC-137065) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 EBF1 h\ subGroups tier=a10 cellType=a10GM12878 factor=EBF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Ebf1sc137065Pcr1xUniPk\ wgEncodeBroadHistoneGm12878H3k27acStdPk GM12878 H3K27ac broadPeak GM12878 H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 17 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel GM12878 H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H3k27acStdPk\ type broadPeak\ wgEncodeSunyRipSeqGm12878RipinputPk GM12878 Input Pk broadPeak GM12878 RIP-Input RIP-seq Analysis from ENCODE/SUNY 2 17 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 RIP-Input RIP-seq Analysis from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewPeaks off\ shortLabel GM12878 Input Pk\ subGroups view=Peaks factor=ripInput cellType=t1GM12878 rep=Pooled\ track wgEncodeSunyRipSeqGm12878RipinputPk\ type broadPeak\ wgEncodeCaltechRnaSeqGm12878R1x75dSplicesRep2V2 GM78 1x75D Sp 2 bam GM12878 single read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 17 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 single read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel GM78 1x75D Sp 2\ subGroups view=Splices cellType=t1GM12878 insertLength=ilNa readType=r1x75D rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12878R1x75dSplicesRep2V2\ type bam\ wgEncodeHaibTfbsGm12878Bcl3V0416101PkRep1 GM78 BCL3 V101 1 broadPeak GM12878 BCL3 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 17 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 BCL3 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 BCL3 V101 1\ subGroups view=Peaks factor=BCL3 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Bcl3V0416101PkRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqGm12878CytosolLongnonpolyaAlnRep1 GM78 cyt pA- A 1 bam GM12878 cytosol polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 17 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel GM78 cyt pA- A 1\ subGroups view=Alignments cellType=t1GM12878 localization=CYTOSOL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878CytosolLongnonpolyaAlnRep1\ type bam\ wgEncodeSydhTfbsGm12878E2f4IggmusPk GM78 E2F4 IgM narrowPeak GM12878 E2F4 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 17 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 E2F4 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 E2F4 IgM\ subGroups view=Peaks factor=E2F4 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878E2f4IggmusPk\ type narrowPeak\ wgEncodeUwHistoneGm12878H3k36me3StdPkRep2 GM78 H3K36M3 Pk 2 narrowPeak GM12878 H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 17 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks on\ shortLabel GM78 H3K36M3 Pk 2\ subGroups view=Peaks factor=H3K36ME3 cellType=t1GM12878 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm12878H3k36me3StdPkRep2\ type narrowPeak\ wgEncodeCshlShortRnaSeqGm12878NucleolusTapMinusRawRep3 GM78 nlus TAP - 1 bigWig 1.000000 13819072.000000 GM12878 TAP-only nucleolus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 17 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only nucleolus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel GM78 nlus TAP - 1\ subGroups view=MinusSignal cellType=t1GM12878 localization=NUCLEOLUS protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqGm12878NucleolusTapMinusRawRep3\ type bigWig 1.000000 13819072.000000\ wgEncodeRikenCageGm12878NucleusPamPlusSignalRep1 GM78 nucl pA- + 1 bigWig 0.710000 17480.259766 GM12878 nucleus polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 17 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleus polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel GM78 nucl pA- + 1\ subGroups view=PlusRawSignal cellType=t1GM12878 localization=nucleus rnaExtract=pAM rep=rep1 rank=rank1\ track wgEncodeRikenCageGm12878NucleusPamPlusSignalRep1\ type bigWig 0.710000 17480.259766\ wgEncodeOpenChromChipH1hescPol2Pk H1-hESC Pol2 Pk narrowPeak H1-hESC Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 17 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks\ shortLabel H1-hESC Pol2 Pk\ subGroups treatment=AANONE view=Peaks factor=POL2 cellType=t1H1HESC\ track wgEncodeOpenChromChipH1hescPol2Pk\ type narrowPeak\ wgEncodeSunyAlbanyGeneStHelas3Elavl1RbpAssocRnaV2 HeLa-S3 ELAV1 broadPeak HeLa-S3 ELAV1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 17 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 ELAV1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt off\ shortLabel HeLa-S3 ELAV1\ subGroups cellType=t2HELAS3 factor=ELAVL1\ track wgEncodeSunyAlbanyGeneStHelas3Elavl1RbpAssocRnaV2\ type broadPeak\ wgEncodeAffyRnaChipFiltTransfragsHepg2CytosolLongpolya HepG2 cyto pA+ broadPeak HepG2 cytosol polyA+ Microarray Transfrags from ENCODE Affy/CSHL 3 17 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 cytosol polyA+ Microarray Transfrags from ENCODE Affy/CSHL\ noInherit on\ parent wgEncodeAffyRnaChipViewFiltTransfrags off\ shortLabel HepG2 cyto pA+\ subGroups view=FiltTransfrags cellType=t2HEPG2 localization=bCYTOSOL rnaExtract=longPolyA\ track wgEncodeAffyRnaChipFiltTransfragsHepg2CytosolLongpolya\ type broadPeak\ wgEncodeAwgSegmentationCombinedHuvec HUVEC Combined bed 9 . HUVEC Genome Segmentation by Combined Segway+ChromHMM from ENCODE/Analysis 0 17 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HUVEC Genome Segmentation by Combined Segway+ChromHMM from ENCODE/Analysis\ parent wgEncodeAwgSegmentation off\ shortLabel HUVEC Combined\ subGroups tier=t2 cellType=t2HUVEC method=Combined\ track wgEncodeAwgSegmentationCombinedHuvec\ type bed 9 .\ wgEncodeUwDgfHuvecHotspots HUVEC Hot broadPeak HUVEC DNaseI DGF Hotspots from ENCODE/UW 0 17 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots on\ shortLabel HUVEC Hot\ subGroups view=Hotspots cellType=t2HUVEC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHuvecHotspots\ type broadPeak\ wgEncodeGisRnaPetK562CytosolPapClustersRep1 K562 cyto pA+ 1 bed 6 + K562 cytosol polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS 2 17 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel K562 cyto pA+ 1\ subGroups view=v1Clusters cellType=aK562 cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562CytosolPapClustersRep1\ type bed 6 +\ wgEncodeUwRepliSeqK562PkRep1 K562 Pk 1 bed 9 K562 Repli-seq Peaks Rep 1 from ENCODE/UW 0 17 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 Repli-seq Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPeaks off\ shortLabel K562 Pk 1\ subGroups view=v2Peaks cellType=t1K562 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqK562PkRep1\ type bed 9\ wgEncodeOpenChromDnaseK562Saha1u72hrSig K562 SAHA 72h DS bigWig 0.000000 1.588700 K562 SAHA 1 uM 72 h DNaseI HS Density Signal from ENCODE/Duke 2 17 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 SAHA 1 uM 72 h DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel K562 SAHA 72h DS\ subGroups view=SIG cellType=t1K562 treatment=SAHA1U72HR\ track wgEncodeOpenChromDnaseK562Saha1u72hrSig\ type bigWig 0.000000 1.588700\ wgEncodeSydhHistoneMcf7H3k36me3bUcdSig MCF-7 H3K36me3 bigWig 1.000000 9422.000000 MCF-7 H3K36me3 Histone Modifications by ChIP-seq Signal from ENCODE/SYDH 2 17 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 H3K36me3 Histone Modifications by ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel MCF-7 H3K36me3\ subGroups view=Signal factor=H3K36me3B cellType=bMCF7 control=UCD treatment=NONE\ track wgEncodeSydhHistoneMcf7H3k36me3bUcdSig\ type bigWig 1.000000 9422.000000\ wgEncodeGisChiaPetMcf7EraaInteractionsRep3 MCF7 ERa Int 3 bed 12 MCF-7 ERalpha a ChIA-PET Interactions Rep 3 from ENCODE/GIS-Ruan 2 17 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 ERalpha a ChIA-PET Interactions Rep 3 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetInteractions off\ shortLabel MCF7 ERa Int 3\ subGroups view=Interactions factor=ERAA cellType=t2MCF7 rep=rep3\ track wgEncodeGisChiaPetMcf7EraaInteractionsRep3\ type bed 12\ polyASeqSitesTestisFwd PolyA-Seq Testis bigWig 0.200000 61261.609375 Poly(A)-tail sequencing of Testis from Merck (Fwd strand) 2 17 153 51 51 204 153 153 0 0 0 rna 0 color 153,51,51\ longLabel Poly(A)-tail sequencing of Testis from Merck (Fwd strand)\ parent polyASeqSitesSignalView\ shortLabel PolyA-Seq Testis\ subGroups view=Signal tissType=Testis strand=fwd\ track polyASeqSitesTestisFwd\ type bigWig 0.200000 61261.609375\ lincRNAsCTProstate Prostate bed 5 + lincRNAs from prostate 1 17 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from prostate\ parent lincRNAsAllCellType on\ shortLabel Prostate\ subGroups view=lincRNAsRefseqExp tissueType=prostate\ track lincRNAsCTProstate\ burgeRnaSeqGemMapperAlignMB435AllRawSignal RNA-seq MB435 Sig bedGraph 4 Burge Lab RNA-seq 32mer Reads from MB-435 Cell Line, Raw Signal 2 17 46 0 184 150 127 219 0 0 0 expression 0 longLabel Burge Lab RNA-seq 32mer Reads from MB-435 Cell Line, Raw Signal\ parent burgeRnaSeqGemMapperAlignViewRawSignal off\ shortLabel RNA-seq MB435 Sig\ subGroups view=RawSignal tissueType=MB435\ track burgeRnaSeqGemMapperAlignMB435AllRawSignal\ SeqCap-EZ_MedExomePlusMito_hg19_empirical_targets SeqCap EZ Med+Mito T bigBed 3 Roche - SeqCap EZ MedExome + Mito Empirical Target Regions 0 17 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/SeqCap_EZ_MedExomePlusMito_hg19_empirical_targets.bb\ color 100,143,255\ longLabel Roche - SeqCap EZ MedExome + Mito Empirical Target Regions\ parent exomeProbesets on\ shortLabel SeqCap EZ Med+Mito T\ track SeqCap-EZ_MedExomePlusMito_hg19_empirical_targets\ type bigBed 3\ wgEncodeHaibMethylRrbsSknshHaibSitesRep1 SK-N-SH 1 bed 9 + SK-N-SH Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 17 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel SK-N-SH 1\ subGroups cellType=t2SKNSH obtainedBy=HAIB treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsSknshHaibSitesRep1\ type bed 9 +\ netFelCat5 felCat5 Net netAlign felCat5 chainFelCat5 Cat (Sep. 2011 (ICGSC Felis_catus 6.2/felCat5)) Alignment Net 1 18 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Cat (Sep. 2011 (ICGSC Felis_catus 6.2/felCat5)) Alignment Net\ otherDb felCat5\ parent placentalChainNetViewnet off\ shortLabel felCat5 Net\ subGroups view=net species=s039 clade=c01\ track netFelCat5\ type netAlign felCat5 chainFelCat5\ netAnoCar2 Lizard Net netAlign anoCar2 chainAnoCar2 Lizard (May 2010 (Broad AnoCar2.0/anoCar2)) Alignment Net 1 18 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Lizard (May 2010 (Broad AnoCar2.0/anoCar2)) Alignment Net\ otherDb anoCar2\ parent vertebrateChainNetViewnet off\ shortLabel Lizard Net\ subGroups view=net species=s027 clade=c02\ track netAnoCar2\ type netAlign anoCar2 chainAnoCar2\ wgEncodeUwTfbsA549CtcfStdHotspotsRep2 A549 CTCF Ht 2 broadPeak A549 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 18 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel A549 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t2A549 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsA549CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeHaibRnaSeqA549Dex5nmAlnRep1 A549 DEX5nM 1 bam A549 DEX 1 hr 5 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 18 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 DEX 1 hr 5 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel A549 DEX5nM 1\ subGroups view=Alignments cellType=t2A549 treatment=DEX5NM rep=rep1\ track wgEncodeHaibRnaSeqA549Dex5nmAlnRep1\ type bam\ wgEncodeOpenChromFaireA549BaseOverlapSignal A549 FAIRE OS bigWig 0.000000 1563.000000 A549 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 18 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel A549 FAIRE OS\ subGroups view=SIGBO cellType=t2A549 treatment=AANONE\ track wgEncodeOpenChromFaireA549BaseOverlapSignal\ type bigWig 0.000000 1563.000000\ encTfChipPkENCFF441MEM A549 FOXA1 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in A549 from ENCODE 3 (ENCFF441MEM) 1 18 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in A549 from ENCODE 3 (ENCFF441MEM)\ parent encTfChipPk off\ shortLabel A549 FOXA1 1\ subGroups cellType=A549 factor=FOXA1\ track encTfChipPkENCFF441MEM\ wgEncodeUwDnaseA549RawRep1 A549 Sg 1 bigWig 1.000000 85215.000000 A549 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 18 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel A549 Sg 1\ subGroups view=zRSig cellType=t2A549 rep=rep1 treatment=None\ track wgEncodeUwDnaseA549RawRep1\ type bigWig 1.000000 85215.000000\ wgEncodeUwAffyExonArrayAg09309SimpleSignalRep1 AG09309 1 broadPeak AG09309 Exon array Signal Rep 1 from ENCODE/UW 0 18 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG09309 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel AG09309 1\ subGroups cellType=t3AG09309 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayAg09309SimpleSignalRep1\ type broadPeak\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep1LK10_CNhs13343_ctss_rev AorticSmsToFgf2_00hr45minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep1 (LK10)_CNhs13343_12645-134G8_reverse 0 18 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12645-134G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep1%20%28LK10%29.CNhs13343.12645-134G8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep1 (LK10)_CNhs13343_12645-134G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12645-134G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep1LK10_CNhs13343_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12645-134G8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep1LK10_CNhs13343_tpm_rev AorticSmsToFgf2_00hr45minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep1 (LK10)_CNhs13343_12645-134G8_reverse 1 18 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12645-134G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep1%20%28LK10%29.CNhs13343.12645-134G8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep1 (LK10)_CNhs13343_12645-134G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12645-134G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep1LK10_CNhs13343_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12645-134G8\ urlLabel FANTOM5 Details:\ wgEncodeHaibGenotypeAosmcRegionsRep1 AoSMC 1 bed 9 + AoSMC Copy number variants Replicate 1 from ENCODE/HAIB 0 18 0 0 0 127 127 127 0 0 0 varRep 1 longLabel AoSMC Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel AoSMC 1\ subGroups cellType=t3AOSMC obtainedBy=Duke treatment=None rep=rep1\ track wgEncodeHaibGenotypeAosmcRegionsRep1\ type bed 9 +\ wgEncodeAwgDnaseUwBe2cUniPk BE2_C DNase narrowPeak BE2_C DNaseI HS Uniform Peaks from ENCODE/Analysis 1 18 0 0 0 127 127 127 1 0 0 regulation 1 longLabel BE2_C DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel BE2_C DNase\ subGroups tier=a30 cellType=BE2_C\ track wgEncodeAwgDnaseUwBe2cUniPk\ wgEncodeHaibMethyl450BjSitesRep1 BJ bed 9 BJ Methylation 450K Bead Array from ENCODE/HAIB 1 18 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel BJ\ subGroups cellType=t3BJ obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450BjSitesRep1\ type bed 9\ dhcHumDerDenAncCcdsUtr5FixedDbSnp CC Utr5 FxS bigBed 4 + Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: CCDS 5' UTR 3 18 0 0 200 127 127 227 0 0 0 denisova 1 color 0,0,200\ longLabel Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: CCDS 5' UTR\ parent dhcHumDerDenAncCcds\ shortLabel CC Utr5 FxS\ subGroups view=Ccds subset=CcdsUtr5 freq=FixedDbSnp\ track dhcHumDerDenAncCcdsUtr5FixedDbSnp\ gtexEqtlTissueColonSigmoid colonSigmoid bed 9 + Expression QTL in Colon_Sigmoid from GTEx V6 0 18 205 183 158 230 219 206 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 205,183,158\ idInUrlSql select gene from gtexEqtlTissueColonSigmoid where name='%s'\ longLabel Expression QTL in Colon_Sigmoid from GTEx V6\ parent gtexEqtlTissue on\ shortLabel colonSigmoid\ track gtexEqtlTissueColonSigmoid\ wgEncodeAwgTfbsSydhGm12878Ebf1sc137065UniPk GM12878 EBF1 s narrowPeak GM12878 TFBS Uniform Peaks of EBF1_(SC-137065) from ENCODE/Stanford/Analysis 1 18 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of EBF1_(SC-137065) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 EBF1 s\ subGroups tier=a10 cellType=a10GM12878 factor=EBF1 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Ebf1sc137065UniPk\ wgEncodeBroadHistoneGm12878H3k27acStdSig GM12878 H3K27ac bigWig 0.040000 355227.000000 GM12878 H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 18 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel GM12878 H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H3k27acStdSig\ type bigWig 0.040000 355227.000000\ wgEncodeSunyRipSeqGm12878RipinputSigRep1 GM12878 Input 1 bigWig 0.000000 83164.492188 GM12878 RIP-Input RIP-seq Signal Rep 1 from ENCODE/SUNY 2 18 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 RIP-Input RIP-seq Signal Rep 1 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewSignal off\ shortLabel GM12878 Input 1\ subGroups view=Signal factor=ripInput cellType=t1GM12878 rep=rep1\ track wgEncodeSunyRipSeqGm12878RipinputSigRep1\ type bigWig 0.000000 83164.492188\ wgEncodeHaibTfbsGm12878Bcl3V0416101RawRep1 GM78 BCL3 V101 1 bigWig 0.151761 82.292603 GM12878 BCL3 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 18 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 BCL3 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 BCL3 V101 1\ subGroups view=RawSignal factor=BCL3 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Bcl3V0416101RawRep1\ type bigWig 0.151761 82.292603\ wgEncodeCshlLongRnaSeqGm12878CytosolLongnonpolyaAlnRep2 GM78 cyt pA- A 2 bam GM12878 cytosol polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 18 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel GM78 cyt pA- A 2\ subGroups view=Alignments cellType=t1GM12878 localization=CYTOSOL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878CytosolLongnonpolyaAlnRep2\ type bam\ wgEncodeSydhTfbsGm12878E2f4IggmusSig GM78 E2F4 IgM bigWig 1.000000 9292.000000 GM12878 E2F4 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 18 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 E2F4 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 E2F4 IgM\ subGroups view=Signal factor=E2F4 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878E2f4IggmusSig\ type bigWig 1.000000 9292.000000\ wgEncodeUwHistoneGm12878H3k36me3StdRawRep2 GM78 H3K36M3 Sg 2 bigWig 1.000000 4313.000000 GM12878 H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 18 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig on\ shortLabel GM78 H3K36M3 Sg 2\ subGroups view=zRSig factor=H3K36ME3 cellType=t1GM12878 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm12878H3k36me3StdRawRep2\ type bigWig 1.000000 4313.000000\ wgEncodeCshlShortRnaSeqGm12878NucleolusTapMinusRawRep4 GM78 nlus TAP - 2 bigWig 1.000000 11989655.000000 GM12878 TAP-only nucleolus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 18 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only nucleolus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel GM78 nlus TAP - 2\ subGroups view=MinusSignal cellType=t1GM12878 localization=NUCLEOLUS protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqGm12878NucleolusTapMinusRawRep4\ type bigWig 1.000000 11989655.000000\ wgEncodeRikenCageGm12878NucleusPamMinusSignalRep1 GM78 nucl pA- - 1 bigWig 0.710000 8817.570312 GM12878 nucleus polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 18 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleus polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel GM78 nucl pA- - 1\ subGroups view=MinusRawSignal cellType=t1GM12878 localization=nucleus rnaExtract=pAM rep=rep1 rank=rank1\ track wgEncodeRikenCageGm12878NucleusPamMinusSignalRep1\ type bigWig 0.710000 8817.570312\ wgEncodeOpenChromChipH1hescPol2Sig H1-hESC Pol2 DS bigWig 0.000000 2.933300 H1-hESC Pol2 TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 18 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Pol2 TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal\ shortLabel H1-hESC Pol2 DS\ subGroups treatment=AANONE view=SIG factor=POL2 cellType=t1H1HESC\ track wgEncodeOpenChromChipH1hescPol2Sig\ type bigWig 0.000000 2.933300\ wgEncodeCaltechRnaSeqH1hescR2x75Il200AlignsRep1V2 H1ES 2x75 A 1 bam H1-hESC 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 18 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel H1ES 2x75 A 1\ subGroups view=Aligns cellType=t1H1HESC insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR2x75Il200AlignsRep1V2\ type bam\ wgEncodeSunyAlbanyGeneStHelas3Pabpc1RbpAssocRnaV2 HeLa-S3 PABPC1 broadPeak HeLa-S3 PABPC1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 18 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 PABPC1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt off\ shortLabel HeLa-S3 PABPC1\ subGroups cellType=t2HELAS3 factor=PABPC1\ track wgEncodeSunyAlbanyGeneStHelas3Pabpc1RbpAssocRnaV2\ type broadPeak\ wgEncodeDukeAffyExonHelas3Ifna4hSimpleSignalRep1V2 HeLa-S3 1 bigBed 6 + HeLa-S3 IFN-a 4 h Exon array Signal Rep 1 from ENCODE/Duke 0 18 0 119 158 127 187 206 1 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 IFN-a 4 h Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HeLa-S3 1\ subGroups cellType=t2HELAS3 treatment=IFNA4H rep=rep1\ track wgEncodeDukeAffyExonHelas3Ifna4hSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeAffyRnaChipFiltTransfragsHepg2NucleusLongnonpolya HepG2 nucl pA- broadPeak HepG2 nucleus polyA- Microarray Transfrags from ENCODE Affy/CSHL 3 18 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleus polyA- Microarray Transfrags from ENCODE Affy/CSHL\ parent wgEncodeAffyRnaChipViewFiltTransfrags off\ shortLabel HepG2 nucl pA-\ subGroups view=FiltTransfrags cellType=t2HEPG2 localization=dNUCLEUS rnaExtract=longNonPolyA\ track wgEncodeAffyRnaChipFiltTransfragsHepg2NucleusLongnonpolya\ type broadPeak\ wgEncodeUwDgfHuvecPk HUVEC Pk narrowPeak HUVEC DNaseI DGF Peaks from ENCODE/UW 0 18 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks on\ shortLabel HUVEC Pk\ subGroups view=Peaks cellType=t2HUVEC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHuvecPk\ type narrowPeak\ wgEncodeAwgSegmentationSegwayHuvec HUVEC Segway bed 9 . HUVEC Genome Segmentation by Segway from ENCODE/Analysis 0 18 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HUVEC Genome Segmentation by Segway from ENCODE/Analysis\ parent wgEncodeAwgSegmentation off\ shortLabel HUVEC Segway\ subGroups tier=t2 cellType=t2HUVEC method=Segway\ track wgEncodeAwgSegmentationSegwayHuvec\ type bed 9 .\ snpArrayIllumina550 Illumina 550 bed 6 + Illumina Human Hap 550v3 0 18 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Illumina Human Hap 550v3\ parent genotypeArrays off\ priority 18\ shortLabel Illumina 550\ track snpArrayIllumina550\ type bed 6 +\ snpArrayIllumina650 Illumina 650 bed 6 + Illumina Human Hap 650v3 0 18 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Illumina Human Hap 650v3\ parent genotypeArrays off\ priority 18\ shortLabel Illumina 650\ track snpArrayIllumina650\ type bed 6 +\ wgEncodeGisRnaPetK562CytosolPapMinusRawRep1 K562 cyto pA+ - 1 bigWig 1.000000 1588640.000000 K562 cytosol polyA+ clone-free RNA PET Minus Signal Rep 1 from ENCODE/GIS 2 18 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA+ clone-free RNA PET Minus Signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel K562 cyto pA+ - 1\ subGroups view=v2MinusRawSignal cellType=aK562 cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562CytosolPapMinusRawRep1\ type bigWig 1.000000 1588640.000000\ wgEncodeOpenChromDnaseK562Saha1u72hrBaseOverlapSignal K562 SAHA 72h OS bigWig 0.000000 330.000000 K562 SAHA 1 uM 72 h DNaseI HS Overlap Signal from ENCODE/Duke 2 18 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 SAHA 1 uM 72 h DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel K562 SAHA 72h OS\ subGroups view=SIGBO cellType=t1K562 treatment=SAHA1U72HR\ track wgEncodeOpenChromDnaseK562Saha1u72hrBaseOverlapSignal\ type bigWig 0.000000 330.000000\ wgEncodeUwRepliSeqK562ValleysRep1 K562 Vly 1 bed 9 K562 Repli-seq Valleys Rep 1 from ENCODE/UW 0 18 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 Repli-seq Valleys Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewValleys off\ shortLabel K562 Vly 1\ subGroups view=v3Valleys cellType=t1K562 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqK562ValleysRep1\ type bed 9\ wgEncodeGisChiaPetMcf7EraaSigRep3 MCF7 ERa Sig 3 bigWig 1.000000 1735.000000 MCF-7 ERalpha a ChIA-PET Signal Rep 3 from ENCODE/GIS-Ruan 2 18 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 ERalpha a ChIA-PET Signal Rep 3 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetSignal off\ shortLabel MCF7 ERa Sig 3\ subGroups view=Signal factor=ERAA cellType=t2MCF7 rep=rep3\ track wgEncodeGisChiaPetMcf7EraaSigRep3\ type bigWig 1.000000 1735.000000\ wgEncodeSydhHistoneMcf7InputUcdSig MCF7 Inupt bigWig 0.000000 12982.900391 MCF-7 Input Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 18 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Input Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel MCF7 Inupt\ subGroups view=Signal factor=INPUT cellType=bMCF7 control=UCD treatment=NONE\ track wgEncodeSydhHistoneMcf7InputUcdSig\ type bigWig 0.000000 12982.900391\ polyASeqSitesTestisRev PolyA-Seq Testis bigWig 0.200000 69989.523438 Poly(A)-tail sequencing of Testis from Merck (Rev strand) 2 18 0 0 0 127 127 127 0 0 0 rna 0 color 0,0,0\ longLabel Poly(A)-tail sequencing of Testis from Merck (Rev strand)\ parent polyASeqSitesSignalView\ shortLabel PolyA-Seq Testis\ subGroups view=Signal tissType=Testis strand=rev\ track polyASeqSitesTestisRev\ type bigWig 0.200000 69989.523438\ burgeRnaSeqGemMapperAlignMCF7AllRawSignal RNA-seq MCF7 Sig bedGraph 4 Burge Lab RNA-seq 32mer Reads from MCF-7 Breast Adenocarcinoma Cell Line, Raw Signal 2 18 46 0 184 150 127 219 0 0 0 expression 0 longLabel Burge Lab RNA-seq 32mer Reads from MCF-7 Breast Adenocarcinoma Cell Line, Raw Signal\ parent burgeRnaSeqGemMapperAlignViewRawSignal off\ shortLabel RNA-seq MCF7 Sig\ subGroups view=RawSignal tissueType=MCF7\ track burgeRnaSeqGemMapperAlignMCF7AllRawSignal\ SeqCap_EZ_Exome_v3_hg19_capture SeqCap EZ V3 P bigBed 4 Roche - SeqCap EZ Exome V3 Capture Probe Footprint 0 18 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/sorted_SeqCap_EZ_Exome_v3_hg19_capture_targets.bb\ color 100,143,255\ longLabel Roche - SeqCap EZ Exome V3 Capture Probe Footprint\ parent exomeProbesets off\ shortLabel SeqCap EZ V3 P\ track SeqCap_EZ_Exome_v3_hg19_capture\ type bigBed 4\ wgEncodeHaibMethylRrbsSknshHaibSitesRep2 SK-N-SH 2 bed 9 + SK-N-SH Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 18 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel SK-N-SH 2\ subGroups cellType=t2SKNSH obtainedBy=HAIB treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsSknshHaibSitesRep2\ type bed 9 +\ lincRNAsCTSkeletalMuscle SkeletalMuscle bed 5 + lincRNAs from skeletalmuscle 1 18 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from skeletalmuscle\ parent lincRNAsAllCellType on\ shortLabel SkeletalMuscle\ subGroups view=lincRNAsRefseqExp tissueType=skeletalmuscle\ track lincRNAsCTSkeletalMuscle\ pgNA19240 YRI daught '9240 pgSnp YRI Trio Daughter NA19240 (1000 Genomes Project) 0 18 128 64 0 191 159 127 0 0 0 varRep 1 color 128,64,0\ longLabel YRI Trio Daughter NA19240 (1000 Genomes Project)\ origAssembly hg18\ parent pgSnp1kG\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel YRI daught '9240\ subGroups view=B_1kG id=BI_19240 type=SNP\ track pgNA19240\ chainBosTau7 bosTau7 Chain chain bosTau7 Cow (Oct. 2011 (Baylor Btau_4.6.1/bosTau7)) Chained Alignments 3 19 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Cow (Oct. 2011 (Baylor Btau_4.6.1/bosTau7)) Chained Alignments\ otherDb bosTau7\ parent placentalChainNetViewchain off\ shortLabel bosTau7 Chain\ subGroups view=chain species=s052 clade=c02\ track chainBosTau7\ type chain bosTau7\ chainXenTro3 X. tropicalis Chain chain xenTro3 X. tropicalis (Nov. 2009 (JGI 4.2/xenTro3)) Chained Alignments 3 19 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel X. tropicalis (Nov. 2009 (JGI 4.2/xenTro3)) Chained Alignments\ otherDb xenTro3\ parent vertebrateChainNetViewchain off\ shortLabel X. tropicalis Chain\ subGroups view=chain species=s031 clade=c03\ track chainXenTro3\ type chain xenTro3\ wgEncodeUwTfbsA549CtcfStdPkRep2 A549 CTCF Pk 2 narrowPeak A549 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 19 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel A549 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t2A549 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsA549CtcfStdPkRep2\ type narrowPeak\ wgEncodeHaibRnaSeqA549Dex5nmRawRep2 A549 DEX5nM 2 bigWig 0.157130 1170.689941 A549 DEX 1 hr 5 nM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 19 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 DEX 1 hr 5 nM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel A549 DEX5nM 2\ subGroups view=RawSignal cellType=t2A549 treatment=DEX5NM rep=rep2\ track wgEncodeHaibRnaSeqA549Dex5nmRawRep2\ type bigWig 0.157130 1170.689941\ encTfChipPkENCFF755AXA A549 FOXA1 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in A549 from ENCODE 3 (ENCFF755AXA) 1 19 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in A549 from ENCODE 3 (ENCFF755AXA)\ parent encTfChipPk off\ shortLabel A549 FOXA1 2\ subGroups cellType=A549 factor=FOXA1\ track encTfChipPkENCFF755AXA\ wgEncodeUwDnaseA549HotspotsRep2 A549 Ht 2 broadPeak A549 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 19 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel A549 Ht 2\ subGroups view=Hot cellType=t2A549 rep=rep2 treatment=None\ track wgEncodeUwDnaseA549HotspotsRep2\ type broadPeak\ wgEncodeHaibMethylRrbsBcadrenalglandh12803nBiochainSitesRep1 Adrenal_BC 1 bed 9 + Adrenal Gland BC H12803N Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 19 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Adrenal Gland BC H12803N Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Adrenal_BC 1\ subGroups cellType=t3ADRENALGLANDBCH12803N obtainedBy=BioChain treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBcadrenalglandh12803nBiochainSitesRep1\ type bed 9 +\ wgEncodeUwAffyExonArrayAg09309SimpleSignalRep2 AG09309 2 broadPeak AG09309 Exon array Signal Rep 2 from ENCODE/UW 0 19 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG09309 Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel AG09309 2\ subGroups cellType=t3AG09309 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayAg09309SimpleSignalRep2\ type broadPeak\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep2LK11_CNhs13361_ctss_fwd AorticSmsToFgf2_00hr45minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep2 (LK11)_CNhs13361_12743-135I7_forward 0 19 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12743-135I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep2%20%28LK11%29.CNhs13361.12743-135I7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep2 (LK11)_CNhs13361_12743-135I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12743-135I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep2LK11_CNhs13361_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12743-135I7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep2LK11_CNhs13361_tpm_fwd AorticSmsToFgf2_00hr45minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep2 (LK11)_CNhs13361_12743-135I7_forward 1 19 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12743-135I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep2%20%28LK11%29.CNhs13361.12743-135I7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep2 (LK11)_CNhs13361_12743-135I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12743-135I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep2LK11_CNhs13361_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12743-135I7\ urlLabel FANTOM5 Details:\ wgEncodeHaibGenotypeBjRegionsRep1 BJ 1 bed 9 + BJ Copy number variants Replicate 1 from ENCODE/HAIB 0 19 0 0 0 127 127 127 0 0 0 varRep 1 longLabel BJ Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel BJ 1\ subGroups cellType=t3BJ obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeBjRegionsRep1\ type bed 9 +\ wgEncodeAwgDnaseUwBjUniPk BJ DNase narrowPeak BJ DNaseI HS Uniform Peaks from ENCODE/Analysis 1 19 0 0 0 127 127 127 1 0 0 regulation 1 longLabel BJ DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel BJ DNase\ subGroups tier=a30 cellType=BJ\ track wgEncodeAwgDnaseUwBjUniPk\ wgEncodeHaibMethyl450Caco2SitesRep1 Caco-2 bed 9 Caco-2 Methylation 450K Bead Array from ENCODE/HAIB 1 19 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel Caco-2\ subGroups cellType=t3CACO2 obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450Caco2SitesRep1\ type bed 9\ dhcHumDerDenAncCcdsUtr5HighFreq CC Utr5 HiF bigBed 4 + Modern Human Derived (HighFreq), Denisova Ancestral: CCDS 5' UTR 3 19 0 0 200 127 127 227 0 0 0 denisova 1 color 0,0,200\ longLabel Modern Human Derived (HighFreq), Denisova Ancestral: CCDS 5' UTR\ parent dhcHumDerDenAncCcds\ shortLabel CC Utr5 HiF\ subGroups view=Ccds subset=CcdsUtr5 freq=HighFreq\ track dhcHumDerDenAncCcdsUtr5HighFreq\ gtexEqtlTissueColonTransverse colonTransverse bed 9 + Expression QTL in Colon_Transverse from GTEx V6 0 19 238 197 145 246 226 200 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 238,197,145\ idInUrlSql select gene from gtexEqtlTissueColonTransverse where name='%s'\ longLabel Expression QTL in Colon_Transverse from GTEx V6\ parent gtexEqtlTissue on\ shortLabel colonTransverse\ track gtexEqtlTissueColonTransverse\ wgEncodeAwgTfbsHaibGm12878Egr1Pcr2xUniPk GM12878 EGR1 narrowPeak GM12878 TFBS Uniform Peaks of Egr-1 from ENCODE/HudsonAlpha/Analysis 1 19 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of Egr-1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 EGR1\ subGroups tier=a10 cellType=a10GM12878 factor=EGR1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Egr1Pcr2xUniPk\ wgEncodeBroadHistoneGm12878H3k27me3StdPkV2 GM12878 H3K27m3 broadPeak GM12878 H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 19 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg18\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel GM12878 H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H3k27me3StdPkV2\ type broadPeak\ wgEncodeSunyRipSeqGm12878RipinputSigRep2 GM12878 Input 2 bigWig 0.000000 106078.593750 GM12878 RIP-Input RIP-seq Signal Rep 2 from ENCODE/SUNY 2 19 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 RIP-Input RIP-seq Signal Rep 2 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewSignal off\ shortLabel GM12878 Input 2\ subGroups view=Signal factor=ripInput cellType=t1GM12878 rep=rep2\ track wgEncodeSunyRipSeqGm12878RipinputSigRep2\ type bigWig 0.000000 106078.593750\ wgEncodeHaibTfbsGm12878Bcl3V0416101PkRep2 GM78 BCL3 V101 2 broadPeak GM12878 BCL3 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 19 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 BCL3 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 BCL3 V101 2\ subGroups view=Peaks factor=BCL3 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Bcl3V0416101PkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqGm12878CytosolPamContigs GM78 cyt pA- C bed 6 + GM12878 cytosol polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 19 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel GM78 cyt pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1GM12878 localization=CYTOSOL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqGm12878CytosolPamContigs\ type bed 6 +\ wgEncodeSydhTfbsGm12878Ebf1sc137065StdPk GM78 EBF1 Std narrowPeak GM12878 EBF1 Standard ChIP-seq Peaks from ENCODE/SYDH 3 19 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 EBF1 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 EBF1 Std\ subGroups view=Peaks factor=EBF1SC137065 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Ebf1sc137065StdPk\ type narrowPeak\ wgEncodeUwHistoneGm12878InputStdRawRep1 GM78 In Sg 1 bigWig 1.000000 8963.000000 GM12878 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 19 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig on\ shortLabel GM78 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t1GM12878 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12878InputStdRawRep1\ type bigWig 1.000000 8963.000000\ wgEncodeCshlShortRnaSeqGm12878NucleolusTapPlusRawRep3 GM78 nlus TAP + 1 bigWig 1.000000 27178892.000000 GM12878 TAP-only nucleolus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 19 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only nucleolus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel GM78 nlus TAP + 1\ subGroups view=PlusSignal cellType=t1GM12878 localization=NUCLEOLUS protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqGm12878NucleolusTapPlusRawRep3\ type bigWig 1.000000 27178892.000000\ wgEncodeRikenCageGm12878NucleusPamAlnRep1 GM78 nucl pA- A 1 bam GM12878 nucleus polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN 0 19 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleus polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel GM78 nucl pA- A 1\ subGroups view=Alignments cellType=t1GM12878 localization=nucleus rnaExtract=pAM rep=rep1 rank=rank1\ track wgEncodeRikenCageGm12878NucleusPamAlnRep1\ type bam\ wgEncodeOpenChromChipH1hescPol2BaseOverlapSignal H1-hESC Pol2 OS bigWig 0.000000 1223.000000 H1-hESC Pol2 TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 19 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Pol2 TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo\ shortLabel H1-hESC Pol2 OS\ subGroups treatment=AANONE view=SIGBO factor=POL2 cellType=t1H1HESC\ track wgEncodeOpenChromChipH1hescPol2BaseOverlapSignal\ type bigWig 0.000000 1223.000000\ wgEncodeCaltechRnaSeqH1hescR2x75Il200AlignsRep2V2 H1ES 2x75 A 2 bam H1-hESC 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 19 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel H1ES 2x75 A 2\ subGroups view=Aligns cellType=t1H1HESC insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR2x75Il200AlignsRep2V2\ type bam\ wgEncodeSydhHistoneHct116H3k04me1UcdPk HCT-116 H3K4me1 narrowPeak HCT-116 H3K4me1 Histone Modifications by ChIP-seq Peaks from ENCODE/SYDH 3 19 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 H3K4me1 Histone Modifications by ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks off\ shortLabel HCT-116 H3K4me1\ subGroups view=Peaks factor=H3K04ME1 cellType=cHCT116 control=UCD treatment=NONE\ track wgEncodeSydhHistoneHct116H3k04me1UcdPk\ type narrowPeak\ wgEncodeDukeAffyExonHelas3Ifna4hSimpleSignalRep2V2 HeLa-S3 2 bigBed 6 + HeLa-S3 IFN-a 4 h Exon array Signal Rep 2 from ENCODE/Duke 0 19 0 119 158 127 187 206 1 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 IFN-a 4 h Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HeLa-S3 2\ subGroups cellType=t2HELAS3 treatment=IFNA4H rep=rep2\ track wgEncodeDukeAffyExonHelas3Ifna4hSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeOpenChromFaireHelas3Pk HeLa-S3 FAIRE Pk narrowPeak HeLa-S3 FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 19 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel HeLa-S3 FAIRE Pk\ subGroups view=Peaks cellType=t2HELAS3 treatment=AANONE\ track wgEncodeOpenChromFaireHelas3Pk\ type narrowPeak\ wgEncodeSunyAlbanyGeneStHelas3T7tagRbpAssocRnaV2 HeLa-S3 T7Tag broadPeak HeLa-S3 T7Tag RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 19 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 T7Tag RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt off\ shortLabel HeLa-S3 T7Tag\ subGroups cellType=t2HELAS3 factor=T7Tag\ track wgEncodeSunyAlbanyGeneStHelas3T7tagRbpAssocRnaV2\ type broadPeak\ wgEncodeAffyRnaChipFiltTransfragsHepg2NucleusLongpolya HepG2 nucl pA+ broadPeak HepG2 nucleus polyA+ Microarray Transfrags from ENCODE Affy/CSHL 3 19 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleus polyA+ Microarray Transfrags from ENCODE Affy/CSHL\ parent wgEncodeAffyRnaChipViewFiltTransfrags off\ shortLabel HepG2 nucl pA+\ subGroups view=FiltTransfrags cellType=t2HEPG2 localization=dNUCLEUS rnaExtract=longPolyA\ track wgEncodeAffyRnaChipFiltTransfragsHepg2NucleusLongpolya\ type broadPeak\ wgEncodeUwDgfHuvecSig HUVEC Sig bigWig 1.000000 72607.000000 HUVEC DNaseI DGF Per-base Signal from ENCODE/UW 2 19 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal on\ shortLabel HUVEC Sig\ subGroups view=Signal cellType=t2HUVEC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHuvecSig\ type bigWig 1.000000 72607.000000\ snpArrayIllumina300 Illumina 300 bed 6 + Illumina Human Hap 300v3 0 19 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Illumina Human Hap 300v3\ parent genotypeArrays off\ priority 19\ shortLabel Illumina 300\ track snpArrayIllumina300\ type bed 6 +\ wgEncodeGisRnaPetK562CytosolPapPlusRawRep1 K562 cyto pA+ + 1 bigWig 1.000000 1905401.000000 K562 cytosol polyA+ clone-free RNA PET Plus Signal Rep 1 from ENCODE/GIS 2 19 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA+ clone-free RNA PET Plus Signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel K562 cyto pA+ + 1\ subGroups view=v2PlusRawSignal cellType=aK562 cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562CytosolPapPlusRawRep1\ type bigWig 1.000000 1905401.000000\ wgEncodeOpenChromDnaseK562SahactrlPk K562 SAHA Ctrl Pk narrowPeak K562 SAHA Control DNaseI HS Peaks from ENCODE/Duke 3 19 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 SAHA Control DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel K562 SAHA Ctrl Pk\ subGroups view=Peaks cellType=t1K562 treatment=SAHACTRL\ track wgEncodeOpenChromDnaseK562SahactrlPk\ type narrowPeak\ wgEncodeUwRepliSeqK562WaveSignalRep1 K562 Ws 1 bigWig -8.533489 91.331688 K562 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW 2 19 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewWaveSignal\ shortLabel K562 Ws 1\ subGroups view=v4WaveSignal cellType=t1K562 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqK562WaveSignalRep1\ type bigWig -8.533489 91.331688\ wgEncodeGisChiaPetMcf7Pol2InteractionsRep1 MCF7 Pol2 Int 1 bed 12 MCF-7 Pol2 ChIA-PET Interactions Rep 1 from ENCODE/GIS-Ruan 2 19 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 Pol2 ChIA-PET Interactions Rep 1 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetInteractions off\ shortLabel MCF7 Pol2 Int 1\ subGroups view=Interactions factor=POL2 cellType=t2MCF7 rep=rep1\ track wgEncodeGisChiaPetMcf7Pol2InteractionsRep1\ type bed 12\ burgeRnaSeqGemMapperAlignT47DAllRawSignal RNA-seq T47D Sig bedGraph 4 Burge Lab RNA-seq 32mer Reads from T-47D Breast Ductal Carcinoma Cell Line, Raw Signal 2 19 46 0 184 150 127 219 0 0 0 expression 0 longLabel Burge Lab RNA-seq 32mer Reads from T-47D Breast Ductal Carcinoma Cell Line, Raw Signal\ parent burgeRnaSeqGemMapperAlignViewRawSignal off\ shortLabel RNA-seq T47D Sig\ subGroups view=RawSignal tissueType=T47D\ track burgeRnaSeqGemMapperAlignT47DAllRawSignal\ SeqCap_EZ_Exome_v3_hg19_primary SeqCap EZ V3 T bigBed 4 Roche - SeqCap EZ Exome V3 Primary Target Regions 0 19 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/sorted_SeqCap_EZ_Exome_v3_hg19_primary_targets.bb\ color 100,143,255\ longLabel Roche - SeqCap EZ Exome V3 Primary Target Regions\ parent exomeProbesets off\ shortLabel SeqCap EZ V3 T\ track SeqCap_EZ_Exome_v3_hg19_primary\ type bigBed 4\ lincRNAsCTTestes Testes bed 5 + lincRNAs from testes 1 19 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from testes\ parent lincRNAsAllCellType on\ shortLabel Testes\ subGroups view=lincRNAsRefseqExp tissueType=testes\ track lincRNAsCTTestes\ pgNA19238 YRI mother '9238 pgSnp YRI Trio Mother NA19238 (1000 Genomes Project) 0 19 128 64 0 191 159 127 0 0 0 varRep 1 color 128,64,0\ longLabel YRI Trio Mother NA19238 (1000 Genomes Project)\ origAssembly hg18\ parent pgSnp1kG\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel YRI mother '9238\ subGroups view=B_1kG id=BJ_19238 type=SNP\ track pgNA19238\ netXenTro3 X. tropicalis Net netAlign xenTro3 chainXenTro3 X. tropicalis (Nov. 2009 (JGI 4.2/xenTro3)) Alignment Net 1 20 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel X. tropicalis (Nov. 2009 (JGI 4.2/xenTro3)) Alignment Net\ otherDb xenTro3\ parent vertebrateChainNetViewnet off\ shortLabel X. tropicalis Net\ subGroups view=net species=s031 clade=c03\ track netXenTro3\ type netAlign xenTro3 chainXenTro3\ netBosTau7 Cow Net netAlign bosTau7 chainBosTau7 Cow (Oct. 2011 (Baylor Btau_4.6.1/bosTau7)) Alignment Net 1 20 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Cow (Oct. 2011 (Baylor Btau_4.6.1/bosTau7)) Alignment Net\ otherDb bosTau7\ parent placentalChainNetViewnet off\ shortLabel Cow Net\ subGroups view=net species=s052 clade=c02\ track netBosTau7\ type netAlign bosTau7 chainBosTau7\ wgEncodeUwTfbsA549CtcfStdRawRep2 A549 CTCF Sg 2 bigWig 1.000000 8690.000000 A549 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 20 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel A549 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t2A549 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsA549CtcfStdRawRep2\ type bigWig 1.000000 8690.000000\ wgEncodeHaibRnaSeqA549Dex5nmAlnRep2 A549 DEX5nM 2 bam A549 DEX 1 hr 5 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 20 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 DEX 1 hr 5 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel A549 DEX5nM 2\ subGroups view=Alignments cellType=t2A549 treatment=DEX5NM rep=rep2\ track wgEncodeHaibRnaSeqA549Dex5nmAlnRep2\ type bam\ encTfChipPkENCFF415WEH A549 HDAC2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in A549 from ENCODE 3 (ENCFF415WEH) 1 20 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in A549 from ENCODE 3 (ENCFF415WEH)\ parent encTfChipPk off\ shortLabel A549 HDAC2\ subGroups cellType=A549 factor=HDAC2\ track encTfChipPkENCFF415WEH\ wgEncodeUwDnaseA549PkRep2 A549 Pk 2 narrowPeak A549 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 20 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel A549 Pk 2\ subGroups view=Peaks cellType=t2A549 rep=rep2 treatment=None\ track wgEncodeUwDnaseA549PkRep2\ type narrowPeak\ wgEncodeHaibMethylRrbsBcadrenalglandh12803nBiochainSitesRep2 Adrenal_BC 2 bed 9 + Adrenal Gland BC H12803N Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 20 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Adrenal Gland BC H12803N Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Adrenal_BC 2\ subGroups cellType=t3ADRENALGLANDBCH12803N obtainedBy=BioChain treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBcadrenalglandh12803nBiochainSitesRep2\ type bed 9 +\ wgEncodeUwAffyExonArrayAg09319SimpleSignalRep1 AG09319 1 broadPeak AG09319 Exon array Signal Rep 1 from ENCODE/UW 0 20 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG09319 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel AG09319 1\ subGroups cellType=t3AG09319 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayAg09319SimpleSignalRep1\ type broadPeak\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep2LK11_CNhs13361_ctss_rev AorticSmsToFgf2_00hr45minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep2 (LK11)_CNhs13361_12743-135I7_reverse 0 20 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12743-135I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep2%20%28LK11%29.CNhs13361.12743-135I7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep2 (LK11)_CNhs13361_12743-135I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12743-135I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep2LK11_CNhs13361_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12743-135I7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep2LK11_CNhs13361_tpm_rev AorticSmsToFgf2_00hr45minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep2 (LK11)_CNhs13361_12743-135I7_reverse 1 20 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12743-135I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep2%20%28LK11%29.CNhs13361.12743-135I7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep2 (LK11)_CNhs13361_12743-135I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12743-135I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep2LK11_CNhs13361_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12743-135I7\ urlLabel FANTOM5 Details:\ wgEncodeHaibGenotypeCaco2RegionsRep1 Caco-2 1 bed 9 + Caco-2 Copy number variants Replicate 1 from ENCODE/HAIB 0 20 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Caco-2 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel Caco-2 1\ subGroups cellType=t3CACO2 obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeCaco2RegionsRep1\ type bed 9 +\ dhcHumDerDenAncCcdsSynFixed CC Syn Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: CCDS Syn 3 20 0 200 0 127 227 127 0 0 0 denisova 1 color 0,200,0\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: CCDS Syn\ parent dhcHumDerDenAncCcds off\ shortLabel CC Syn Fxd\ subGroups view=Ccds subset=CcdsZLast_Syn freq=Fixed\ track dhcHumDerDenAncCcdsSynFixed\ wgEncodeAwgDnaseUwCd34mobilizedUniPk CD34+_Mobil DNase narrowPeak CD34+_Mobilized DNaseI HS Uniform Peaks from ENCODE/Analysis 1 20 0 0 0 127 127 127 1 0 0 regulation 1 longLabel CD34+_Mobilized DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel CD34+_Mobil DNase\ subGroups tier=a30 cellType=CD34_Mobilized\ track wgEncodeAwgDnaseUwCd34mobilizedUniPk\ wgEncodeHaibMethyl450CmkSitesRep1 CMK bed 9 CMK Methylation 450K Bead Array from ENCODE/HAIB 1 20 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CMK Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel CMK\ subGroups cellType=t3CMK obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450CmkSitesRep1\ type bed 9\ gtexEqtlTissueEsophagusJunction esophagusJunction bed 9 + Expression QTL in Esophagus_Gastroesophageal_Junction from GTEx V6 0 20 139 115 85 197 185 170 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 139,115,85\ idInUrlSql select gene from gtexEqtlTissueEsophagusJunction where name='%s'\ longLabel Expression QTL in Esophagus_Gastroesophageal_Junction from GTEx V6\ parent gtexEqtlTissue on\ shortLabel esophagusJunction\ track gtexEqtlTissueEsophagusJunction\ wgEncodeAwgTfbsHaibGm12878Elf1sc631V0416101UniPk GM12878 ELF1 narrowPeak GM12878 TFBS Uniform Peaks of ELF1_(SC-631) from ENCODE/HudsonAlpha/Analysis 1 20 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of ELF1_(SC-631) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 ELF1\ subGroups tier=a10 cellType=a10GM12878 factor=ELF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Elf1sc631V0416101UniPk\ wgEncodeBroadHistoneGm12878H3k27me3StdSigV2 GM12878 H3K27m3 bigWig 0.040000 36959.921875 GM12878 H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 20 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg18\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel GM12878 H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H3k27me3StdSigV2\ type bigWig 0.040000 36959.921875\ wgEncodeHaibTfbsGm12878Bcl3V0416101RawRep2 GM78 BCL3 V101 2 bigWig 0.260326 363.350006 GM12878 BCL3 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 20 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 BCL3 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 BCL3 V101 2\ subGroups view=RawSignal factor=BCL3 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Bcl3V0416101RawRep2\ type bigWig 0.260326 363.350006\ wgEncodeCshlLongRnaSeqGm12878CytosolPamJunctions GM78 cyt pA- J bed 6 + GM12878 cytosol polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 20 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel GM78 cyt pA- J\ subGroups view=Junctions cellType=t1GM12878 localization=CYTOSOL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqGm12878CytosolPamJunctions\ type bed 6 +\ wgEncodeSydhTfbsGm12878Ebf1sc137065StdSig GM78 EBF1 Std bigWig 1.000000 10389.000000 GM12878 EBF1 Standard ChIP-seq Signal from ENCODE/SYDH 2 20 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 EBF1 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 EBF1 Std\ subGroups view=Signal factor=EBF1SC137065 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Ebf1sc137065StdSig\ type bigWig 1.000000 10389.000000\ wgEncodeCshlShortRnaSeqGm12878NucleolusTapPlusRawRep4 GM78 nlus TAP + 2 bigWig 1.000000 23041462.000000 GM12878 TAP-only nucleolus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 20 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only nucleolus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel GM78 nlus TAP + 2\ subGroups view=PlusSignal cellType=t1GM12878 localization=NUCLEOLUS protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqGm12878NucleolusTapPlusRawRep4\ type bigWig 1.000000 23041462.000000\ wgEncodeRikenCageGm12878NucleusPapTssHmm GM78 nucl pA+ bed 6 GM12878 nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 20 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel GM78 nucl pA+\ subGroups view=TssHmm cellType=t1GM12878 localization=nucleus rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageGm12878NucleusPapTssHmm\ type bed 6\ wgEncodeCaltechRnaSeqH1hescR2x75Il200AlignsRep3V2 H1ES 2x75 A 3 bam H1-hESC 200 bp paired read RNA-seq Alignments Rep 3 from ENCODE/Caltech 0 20 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC 200 bp paired read RNA-seq Alignments Rep 3 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel H1ES 2x75 A 3\ subGroups view=Aligns cellType=t1H1HESC insertLength=il200 readType=a1R2x75 rep=rep3 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR2x75Il200AlignsRep3V2\ type bam\ wgEncodeSydhHistoneHct116H3k04me1UcdSig HCT-116 H3K4me1 bigWig 1.000000 8904.000000 HCT-116 H3K4me1 Histone Modifications by ChIP-seq Signal from ENCODE/SYDH 2 20 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 H3K4me1 Histone Modifications by ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel HCT-116 H3K4me1\ subGroups view=Signal factor=H3K04ME1 cellType=cHCT116 control=UCD treatment=NONE\ track wgEncodeSydhHistoneHct116H3k04me1UcdSig\ type bigWig 1.000000 8904.000000\ wgEncodeDukeAffyExonHelas3Ifng4hSimpleSignalRep1V2 HeLa-S3 1 bigBed 6 + HeLa-S3 IFN-g 4 h Exon array Signal Rep 1 from ENCODE/Duke 0 20 0 119 158 127 187 206 1 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 IFN-g 4 h Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HeLa-S3 1\ subGroups cellType=t2HELAS3 treatment=IFNG4H rep=rep1\ track wgEncodeDukeAffyExonHelas3Ifng4hSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeOpenChromFaireHelas3Sig HeLa-S3 FAIRE DS bigWig 0.000000 0.549300 HeLa-S3 FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 20 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel HeLa-S3 FAIRE DS\ subGroups view=SIG cellType=t2HELAS3 treatment=AANONE\ track wgEncodeOpenChromFaireHelas3Sig\ type bigWig 0.000000 0.549300\ wgEncodeSunyAlbanyGeneStHelas3RipinputRbpAssocRnaV2 HeLa-S3 RIP-Input broadPeak HeLa-S3 RIP-Input RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 20 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 RIP-Input RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt off\ shortLabel HeLa-S3 RIP-Input\ subGroups cellType=t2HELAS3 factor=ripInput\ track wgEncodeSunyAlbanyGeneStHelas3RipinputRbpAssocRnaV2\ type broadPeak\ wgEncodeAffyRnaChipFiltTransfragsHepg2NucleolusTotal HepG2 nlus tot broadPeak HepG2 nucleolus total Microarray Transfrags from ENCODE Affy/CSHL 3 20 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleolus total Microarray Transfrags from ENCODE Affy/CSHL\ parent wgEncodeAffyRnaChipViewFiltTransfrags off\ shortLabel HepG2 nlus tot\ subGroups view=FiltTransfrags cellType=t2HEPG2 localization=gNUCLEOLUS rnaExtract=total\ track wgEncodeAffyRnaChipFiltTransfragsHepg2NucleolusTotal\ type broadPeak\ wgEncodeUwDgfHuvecRaw HUVEC Raw bigWig 1.000000 242408.000000 HUVEC DNaseI DGF Raw Signal from ENCODE/UW 0 20 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw on\ shortLabel HUVEC Raw\ subGroups view=zRaw cellType=t2HUVEC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHuvecRaw\ type bigWig 1.000000 242408.000000\ snpArrayIllumina1M Illumina 1M-Duo bed 6 + Illumina Human1M-Duo 0 20 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Illumina Human1M-Duo\ parent genotypeArrays\ priority 20\ shortLabel Illumina 1M-Duo\ track snpArrayIllumina1M\ type bed 6 +\ wgEncodeOpenChromChipK562CmycPk K562 cMyc Pk narrowPeak K562 cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 20 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks\ shortLabel K562 cMyc Pk\ subGroups treatment=AANONE view=Peaks factor=CMYC cellType=t1K562\ track wgEncodeOpenChromChipK562CmycPk\ type narrowPeak\ wgEncodeGisRnaPetK562CytosolPapAlnRep1 K562 cyto pA+ A 1 bam K562 cytosol polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS 0 20 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel K562 cyto pA+ A 1\ subGroups view=v3Alignments cellType=aK562 cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562CytosolPapAlnRep1\ type bam\ wgEncodeSunyRipSeqK562Elavl1AlnRep1 K562 ELAVL1 1 bam K562 ELAVL1 RIP-seq Alignments Rep 1 from ENCODE/SUNY 0 20 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ELAVL1 RIP-seq Alignments Rep 1 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewAlignments off\ shortLabel K562 ELAVL1 1\ subGroups view=Alignments factor=ELAVL1 cellType=t1K562 rep=rep1\ track wgEncodeSunyRipSeqK562Elavl1AlnRep1\ type bam\ wgEncodeUwHistoneK562H3k4me3StdHotspotsRep1 K562 H3K4M3 Ht 1 broadPeak K562 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 20 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot on\ shortLabel K562 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t1K562 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneK562H3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeOpenChromDnaseK562SahactrlSig K562 SAHA Ctrl DS bigWig 0.000000 2.081900 K562 SAHA Control DNaseI HS Density Signal from ENCODE/Duke 2 20 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 SAHA Control DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel K562 SAHA Ctrl DS\ subGroups view=SIG cellType=t1K562 treatment=SAHACTRL\ track wgEncodeOpenChromDnaseK562SahactrlSig\ type bigWig 0.000000 2.081900\ wgEncodeUwRepliSeqK562SumSignalRep1 K562 Sd 1 bigWig 2.000000 3354.000000 K562 Repli-seq Summed Densities Rep 1 from ENCODE/UW 0 20 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Repli-seq Summed Densities Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewSumSignal off\ shortLabel K562 Sd 1\ subGroups view=v5SumSignal cellType=t1K562 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqK562SumSignalRep1\ type bigWig 2.000000 3354.000000\ wgEncodeGisChiaPetMcf7Pol2SigRep1 MCF7 Pol2 Sig 1 bigWig 1.000000 8201.000000 MCF-7 Pol2 ChIA-PET Signal Rep 1 from ENCODE/GIS-Ruan 2 20 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Pol2 ChIA-PET Signal Rep 1 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetSignal off\ shortLabel MCF7 Pol2 Sig 1\ subGroups view=Signal factor=POL2 cellType=t2MCF7 rep=rep1\ track wgEncodeGisChiaPetMcf7Pol2SigRep1\ type bigWig 1.000000 8201.000000\ phastConsElements46wayPrimates Primate El bed 5 . Primate Conserved Elements 0 20 170 50 100 212 152 177 0 0 0 compGeno 1 color 170,50,100\ longLabel Primate Conserved Elements\ noInherit on\ parent cons46wayViewelements off\ priority 20\ shortLabel Primate El\ subGroups view=elements clade=primate\ track phastConsElements46wayPrimates\ type bed 5 .\ burgeRnaSeqGemMapperAlignAdiposeAllRawSignal RNA-seq Adipose Sig bedGraph 4 Burge Lab RNA-seq 32mer Reads from Adipose, Raw Signal 2 20 46 0 184 150 127 219 0 0 0 expression 0 longLabel Burge Lab RNA-seq 32mer Reads from Adipose, Raw Signal\ parent burgeRnaSeqGemMapperAlignViewRawSignal off\ shortLabel RNA-seq Adipose Sig\ subGroups view=RawSignal tissueType=adipose\ track burgeRnaSeqGemMapperAlignAdiposeAllRawSignal\ SeqCap_EZ_ExomeV3_Plus_UTR_hg19_capture_annotated SeqCap EZ V3 UTR P bigBed 3 Roche - SeqCap EZ Exome V3 + UTR Capture Probe Footprint 0 20 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/sorted-SeqCap_EZ_ExomeV3_Plus_UTR_hg19_capture_annotated.bb\ color 100,143,255\ longLabel Roche - SeqCap EZ Exome V3 + UTR Capture Probe Footprint\ parent exomeProbesets off\ shortLabel SeqCap EZ V3 UTR P\ track SeqCap_EZ_ExomeV3_Plus_UTR_hg19_capture_annotated\ type bigBed 3\ lincRNAsCTTestes_R Testes_R bed 5 + lincRNAs from testes_r 1 20 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from testes_r\ parent lincRNAsAllCellType on\ shortLabel Testes_R\ subGroups view=lincRNAsRefseqExp tissueType=testes_r\ track lincRNAsCTTestes_R\ pgNA19239 YRI father '9239 pgSnp YRI Trio Father NA19239 (1000 Genomes Project) 0 20 128 64 0 191 159 127 0 0 0 varRep 1 color 128,64,0\ longLabel YRI Trio Father NA19239 (1000 Genomes Project)\ origAssembly hg18\ parent pgSnp1kG\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel YRI father '9239\ subGroups view=B_1kG id=BK_19239 type=SNP\ track pgNA19239\ chainDanRer7 Zebrafish Chain chain danRer7 Zebrafish (Jul. 2010 (Zv9/danRer7)) Chained Alignments 3 21 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Zebrafish (Jul. 2010 (Zv9/danRer7)) Chained Alignments\ otherDb danRer7\ parent vertebrateChainNetViewchain off\ shortLabel Zebrafish Chain\ subGroups view=chain species=s045 clade=c06\ track chainDanRer7\ type chain danRer7\ chainOviAri3 Sheep Chain chain oviAri3 Sheep (Aug. 2012 (ISGC Oar_v3.1/oviAri3)) Chained Alignments 3 21 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Sheep (Aug. 2012 (ISGC Oar_v3.1/oviAri3)) Chained Alignments\ otherDb oviAri3\ parent placentalChainNetViewchain off\ shortLabel Sheep Chain\ subGroups view=chain species=s065c clade=c02\ track chainOviAri3\ type chain oviAri3\ wgEncodeHaibRnaSeqA549Etoh02RawRep1 A549 ETOH 1 bigWig 0.218757 915.445007 A549 ETOH 1 hr 0.02% RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 21 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 ETOH 1 hr 0.02% RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal on\ shortLabel A549 ETOH 1\ subGroups view=RawSignal cellType=t2A549 treatment=ETOH02 rep=rep1\ track wgEncodeHaibRnaSeqA549Etoh02RawRep1\ type bigWig 0.218757 915.445007\ wgEncodeUwTfbsA549InputStdRawRep1 A549 In Sg 1 bigWig 1.000000 12152.000000 A549 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 21 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel A549 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t2A549 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsA549InputStdRawRep1\ type bigWig 1.000000 12152.000000\ encTfChipPkENCFF708LCH A549 JUN narrowPeak Transcription Factor ChIP-seq Peaks of JUN in A549 from ENCODE 3 (ENCFF708LCH) 1 21 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUN in A549 from ENCODE 3 (ENCFF708LCH)\ parent encTfChipPk off\ shortLabel A549 JUN\ subGroups cellType=A549 factor=JUN\ track encTfChipPkENCFF708LCH\ wgEncodeUwDnaseA549RawRep2 A549 Sg 2 bigWig 1.000000 71139.000000 A549 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 21 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel A549 Sg 2\ subGroups view=zRSig cellType=t2A549 rep=rep2 treatment=None\ track wgEncodeUwDnaseA549RawRep2\ type bigWig 1.000000 71139.000000\ wgEncodeHaibMethylRrbsAg04449UwSitesRep1 AG04449 1 bed 9 + AG04449 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 21 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04449 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel AG04449 1\ subGroups cellType=t3AG04449 obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsAg04449UwSitesRep1\ type bed 9 +\ wgEncodeUwAffyExonArrayAg09319SimpleSignalRep2 AG09319 2 broadPeak AG09319 Exon array Signal Rep 2 from ENCODE/UW 0 21 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG09319 Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel AG09319 2\ subGroups cellType=t3AG09319 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayAg09319SimpleSignalRep2\ type broadPeak\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_ctss_fwd AorticSmsToFgf2_00hr45minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_forward 0 21 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep3%20%28LK12%29.CNhs13571.12841-137B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12841-137B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_tpm_fwd AorticSmsToFgf2_00hr45minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_forward 1 21 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep3%20%28LK12%29.CNhs13571.12841-137B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12841-137B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6\ urlLabel FANTOM5 Details:\ dhcHumDerDenAncCcdsSynFixedDbSnp CC Syn FxS bigBed 4 + Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: CCDS Syn 3 21 0 200 0 127 227 127 0 0 0 denisova 1 color 0,200,0\ longLabel Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: CCDS Syn\ parent dhcHumDerDenAncCcds off\ shortLabel CC Syn FxS\ subGroups view=Ccds subset=CcdsZLast_Syn freq=FixedDbSnp\ track dhcHumDerDenAncCcdsSynFixedDbSnp\ pgNA12878CG CEU NA12878 pgSnp CEU pedigree 1463, NA12878 (Complete Genomics) 0 21 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU pedigree 1463, NA12878 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12878\ subGroups view=C_CG id=BF_12878 type=SNP\ track pgNA12878CG\ wgEncodeHaibGenotypeChorionRegionsRep1 Chorion 1 bed 9 + Chorion Copy number variants Replicate 1 from ENCODE/HAIB 0 21 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Chorion Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel Chorion 1\ subGroups cellType=t3CHORION obtainedBy=Duke treatment=None rep=rep1\ track wgEncodeHaibGenotypeChorionRegionsRep1\ type bed 9 +\ wgEncodeAwgDnaseDukeCllUniPk CLL DNase narrowPeak CLL DNaseI HS Uniform Peaks from ENCODE/Analysis 1 21 0 0 0 127 127 127 1 0 0 regulation 1 longLabel CLL DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel CLL DNase\ subGroups tier=a30 cellType=CLL\ track wgEncodeAwgDnaseDukeCllUniPk\ wgEncodeHaibMethyl450Ecc1SitesRep1 ECC-1 bed 9 ECC-1 Methylation 450K Bead Array from ENCODE/HAIB 1 21 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel ECC-1\ subGroups cellType=t3ECC1 obtainedBy=HAIB treatment=zNONE\ track wgEncodeHaibMethyl450Ecc1SitesRep1\ type bed 9\ gtexEqtlTissueEsophagusMucosa esophagusMucosa bed 9 + Expression QTL in Esophagus_Mucosa from GTEx V6 0 21 139 115 85 197 185 170 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 139,115,85\ idInUrlSql select gene from gtexEqtlTissueEsophagusMucosa where name='%s'\ longLabel Expression QTL in Esophagus_Mucosa from GTEx V6\ parent gtexEqtlTissue on\ shortLabel esophagusMucosa\ track gtexEqtlTissueEsophagusMucosa\ wgEncodeAwgTfbsSydhGm12878Elk112771IggmusUniPk GM12878 ELK1 narrowPeak GM12878 TFBS Uniform Peaks of ELK1_(1277-1) from ENCODE/Stanford/Analysis 1 21 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of ELK1_(1277-1) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 ELK1\ subGroups tier=a10 cellType=a10GM12878 factor=ELK1 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Elk112771IggmusUniPk\ wgEncodeBroadHistoneGm12878H3k36me3StdPk GM12878 H3K36m3 broadPeak GM12878 H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 21 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel GM12878 H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H3k36me3StdPk\ type broadPeak\ wgEncodeHaibTfbsGm12878Bclaf101388V0416101PkRep1 GM78 BCLAF1 1 broadPeak GM12878 BCLAF1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 21 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 BCLAF1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 BCLAF1 1\ subGroups view=Peaks factor=BCLAF101388 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Bclaf101388V0416101PkRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqGm12878CytosolLongnonpolyaMinusRawSigRep1 GM78 cyt pA- - 1 bigWig 1.000000 6361835.000000 GM12878 cytosol polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 21 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 cytosol polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel GM78 cyt pA- - 1\ subGroups view=MinusSignal cellType=t1GM12878 localization=CYTOSOL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878CytosolLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 6361835.000000\ wgEncodeSydhTfbsGm12878Elk112771IggmusPk GM78 ELK1 IgM narrowPeak GM12878 ELK1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 21 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ELK1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 ELK1 IgM\ subGroups view=Peaks factor=ELK112771 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Elk112771IggmusPk\ type narrowPeak\ wgEncodeRikenCageGm12878NucleusPapPlusSignalRep1 GM78 nucl pA+ + 1 bigWig 1.000000 255779.000000 GM12878 nucleus polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 21 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleus polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel GM78 nucl pA+ + 1\ subGroups view=PlusRawSignal cellType=t1GM12878 localization=nucleus rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageGm12878NucleusPapPlusSignalRep1\ type bigWig 1.000000 255779.000000\ wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapContigs GM78 nucl TAP C bed 6 GM12878 TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL 2 21 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel GM78 nucl TAP C\ subGroups view=Contigs cellType=t1GM12878 localization=NUCLEUS protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapContigs\ type bed 6\ wgEncodeCaltechRnaSeqH1hescR2x75Il200AlignsRep4V2 H1ES 2x75 A 4 bam H1-hESC 200 bp paired read RNA-seq Alignments Rep 4 from ENCODE/Caltech 0 21 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC 200 bp paired read RNA-seq Alignments Rep 4 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel H1ES 2x75 A 4\ subGroups view=Aligns cellType=t1H1HESC insertLength=il200 readType=a1R2x75 rep=rep4 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR2x75Il200AlignsRep4V2\ type bam\ wgEncodeSydhHistoneHct116H3k27acUcdPk HCT-116 H3K27ac narrowPeak HCT-116 H3K27ac Histone Modifications by ChIP-seq Peaks from ENCODE/SYDH 3 21 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 H3K27ac Histone Modifications by ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks off\ shortLabel HCT-116 H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=cHCT116 control=UCD treatment=NONE\ track wgEncodeSydhHistoneHct116H3k27acUcdPk\ type narrowPeak\ wgEncodeDukeAffyExonHelas3Ifng4hSimpleSignalRep2V2 HeLa-S3 2 bigBed 6 + HeLa-S3 IFN-g 4 h Exon array Signal Rep 2 from ENCODE/Duke 0 21 0 119 158 127 187 206 1 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 IFN-g 4 h Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HeLa-S3 2\ subGroups cellType=t2HELAS3 treatment=IFNG4H rep=rep2\ track wgEncodeDukeAffyExonHelas3Ifng4hSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeOpenChromFaireHelas3BaseOverlapSignal HeLa-S3 FAIRE OS bigWig 0.000000 2532.000000 HeLa-S3 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 21 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel HeLa-S3 FAIRE OS\ subGroups view=SIGBO cellType=t2HELAS3 treatment=AANONE\ track wgEncodeOpenChromFaireHelas3BaseOverlapSignal\ type bigWig 0.000000 2532.000000\ wgEncodeUwRepliSeqHelas3G1bPctSignalRep1 HeLa-S3 G1b 1 bigWig 1.000000 100.000000 HeLa-S3 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 21 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HeLa-S3 G1b 1\ subGroups view=v1PctSignal cellType=t2HELAS3 phase=p1G1B rep=rep1\ track wgEncodeUwRepliSeqHelas3G1bPctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeSunyAlbanyGeneStHepg2Elavl1RbpAssocRnaV2 HepG2 ELAVL1 broadPeak HepG2 ELAVL1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 21 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 ELAVL1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt off\ shortLabel HepG2 ELAVL1\ subGroups cellType=t2HEPG2 factor=ELAVL1\ track wgEncodeSunyAlbanyGeneStHepg2Elavl1RbpAssocRnaV2\ type broadPeak\ snpArrayIlluminaHumanCytoSNP_12 Illumina Cyto-12 bed 6 + Illumina Human CytoSNP-12 0 21 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Illumina Human CytoSNP-12\ parent genotypeArrays\ priority 21\ shortLabel Illumina Cyto-12\ track snpArrayIlluminaHumanCytoSNP_12\ type bed 6 +\ wgEncodeOpenChromChipK562CmycSig K562 cMyc DS bigWig 0.000000 1.981500 K562 cMyc TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 21 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 cMyc TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal\ shortLabel K562 cMyc DS\ subGroups treatment=AANONE view=SIG factor=CMYC cellType=t1K562\ track wgEncodeOpenChromChipK562CmycSig\ type bigWig 0.000000 1.981500\ wgEncodeSunyRipSeqK562Elavl1AlnRep2 K562 ELAVL1 2 bam K562 ELAVL1 RIP-seq Alignments Rep 2 from ENCODE/SUNY 0 21 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ELAVL1 RIP-seq Alignments Rep 2 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewAlignments off\ shortLabel K562 ELAVL1 2\ subGroups view=Alignments factor=ELAVL1 cellType=t1K562 rep=rep2\ track wgEncodeSunyRipSeqK562Elavl1AlnRep2\ type bam\ wgEncodeUwHistoneK562H3k4me3StdPkRep1 K562 H3K4M3 Pk 1 narrowPeak K562 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 21 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks on\ shortLabel K562 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t1K562 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneK562H3k4me3StdPkRep1\ type narrowPeak\ wgEncodeGisRnaPetK562NucleolusTotalClustersRep1 K562 nlus tot 1 bed 6 + K562 nucleolus total clone-based RNA PET Clusters Rep 1 from ENCODE/GIS 2 21 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleolus total clone-based RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel K562 nlus tot 1\ subGroups view=v1Clusters cellType=aK562 cloned=Based localization=nucleolus rnaExtract=total rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562NucleolusTotalClustersRep1\ type bed 6 +\ wgEncodeOpenChromDnaseK562SahactrlBaseOverlapSignal K562 SAHA Ctrl OS bigWig 0.000000 341.000000 K562 SAHA Control DNaseI HS Overlap Signal from ENCODE/Duke 2 21 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 SAHA Control DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel K562 SAHA Ctrl OS\ subGroups view=SIGBO cellType=t1K562 treatment=SAHACTRL\ track wgEncodeOpenChromDnaseK562SahactrlBaseOverlapSignal\ type bigWig 0.000000 341.000000\ wgEncodeUwDgfLhcnm2Diff4dHotspots LHCNM2 DIFF4d Hot broadPeak LHCN-M2 DIFF 4 d DNaseI DGF Hotspots from ENCODE/UW 0 21 0 0 0 127 127 127 0 0 0 regulation 1 longLabel LHCN-M2 DIFF 4 d DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel LHCNM2 DIFF4d Hot\ subGroups view=Hotspots cellType=t2LHCNM2 treatment=DIFF4D rep=rep1\ track wgEncodeUwDgfLhcnm2Diff4dHotspots\ type broadPeak\ wgEncodeGisChiaPetMcf7Pol2InteractionsRep2 MCF7 Pol2 Int 2 bed 12 MCF-7 Pol2 ChIA-PET Interactions Rep 2 from ENCODE/GIS-Ruan 2 21 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 Pol2 ChIA-PET Interactions Rep 2 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetInteractions off\ shortLabel MCF7 Pol2 Int 2\ subGroups view=Interactions factor=POL2 cellType=t2MCF7 rep=rep2\ track wgEncodeGisChiaPetMcf7Pol2InteractionsRep2\ type bed 12\ wgEncodeAffyRnaChipFiltTransfragsKeratinocyteCytosolLongnonpolya NHEK cyto pA- broadPeak NHEK cytosol polyA- Microarray Transfrags from ENCODE Affy/CSHL 3 21 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK cytosol polyA- Microarray Transfrags from ENCODE Affy/CSHL\ noInherit on\ parent wgEncodeAffyRnaChipViewFiltTransfrags off\ shortLabel NHEK cyto pA-\ subGroups view=FiltTransfrags cellType=t3NHEK localization=bCYTOSOL rnaExtract=longNonPolyA\ track wgEncodeAffyRnaChipFiltTransfragsKeratinocyteCytosolLongnonpolya\ type broadPeak\ burgeRnaSeqGemMapperAlignBrainAllRawSignal RNA-seq Brain Sig bedGraph 4 Burge Lab RNA-seq 32mer Reads from Brain, Raw Signal 2 21 46 0 184 150 127 219 0 0 0 expression 0 longLabel Burge Lab RNA-seq 32mer Reads from Brain, Raw Signal\ parent burgeRnaSeqGemMapperAlignViewRawSignal on\ shortLabel RNA-seq Brain Sig\ subGroups view=RawSignal tissueType=brain\ track burgeRnaSeqGemMapperAlignBrainAllRawSignal\ SeqCap_EZ_ExomeV3_Plus_UTR_hg19_primary_annotated SeqCap EZ V3 UTR T bigBed 4 Roche - SeqCap EZ Exome V3 + UTR Primary Target Regions 0 21 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/sorted-SeqCap_EZ_ExomeV3_Plus_UTR_hg19_primary_annotated.bb\ color 100,143,255\ longLabel Roche - SeqCap EZ Exome V3 + UTR Primary Target Regions\ parent exomeProbesets off\ shortLabel SeqCap EZ V3 UTR T\ track SeqCap_EZ_ExomeV3_Plus_UTR_hg19_primary_annotated\ type bigBed 4\ lincRNAsCTThyroid Thyroid bed 5 + lincRNAs from thyroid 1 21 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from thyroid\ parent lincRNAsAllCellType on\ shortLabel Thyroid\ subGroups view=lincRNAsRefseqExp tissueType=thyroid\ track lincRNAsCTThyroid\ netDanRer7 Zebrafish Net netAlign danRer7 chainDanRer7 Zebrafish (Jul. 2010 (Zv9/danRer7)) Alignment Net 1 22 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Zebrafish (Jul. 2010 (Zv9/danRer7)) Alignment Net\ otherDb danRer7\ parent vertebrateChainNetViewnet on\ shortLabel Zebrafish Net\ subGroups view=net species=s045 clade=c06\ track netDanRer7\ type netAlign danRer7 chainDanRer7\ netOviAri3 Sheep Net netAlign oviAri3 chainOviAri3 Sheep (Aug. 2012 (ISGC Oar_v3.1/oviAri3)) Alignment Net 1 22 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Sheep (Aug. 2012 (ISGC Oar_v3.1/oviAri3)) Alignment Net\ otherDb oviAri3\ parent placentalChainNetViewnet off\ shortLabel Sheep Net\ subGroups view=net species=s065c clade=c02\ track netOviAri3\ type netAlign oviAri3 chainOviAri3\ wgEncodeHaibRnaSeqA549Etoh02AlnRep1 A549 ETOH 1 bam A549 ETOH 1 hr 0.02% RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 22 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 ETOH 1 hr 0.02% RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel A549 ETOH 1\ subGroups view=Alignments cellType=t2A549 treatment=ETOH02 rep=rep1\ track wgEncodeHaibRnaSeqA549Etoh02AlnRep1\ type bam\ encTfChipPkENCFF499OUD A549 JUND narrowPeak Transcription Factor ChIP-seq Peaks of JUND in A549 from ENCODE 3 (ENCFF499OUD) 1 22 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUND in A549 from ENCODE 3 (ENCFF499OUD)\ parent encTfChipPk off\ shortLabel A549 JUND\ subGroups cellType=A549 factor=JUND\ track encTfChipPkENCFF499OUD\ wgEncodeHaibMethylRrbsAg04449UwSitesRep2 AG04449 2 bed 9 + AG04449 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 22 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04449 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel AG04449 2\ subGroups cellType=t3AG04449 obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsAg04449UwSitesRep2\ type bed 9 +\ wgEncodeUwAffyExonArrayAg10803SimpleSignalRep1 AG10803 1 broadPeak AG10803 Exon array Signal Rep 1 from ENCODE/UW 0 22 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG10803 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel AG10803 1\ subGroups cellType=t3AG10803 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayAg10803SimpleSignalRep1\ type broadPeak\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_ctss_rev AorticSmsToFgf2_00hr45minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_reverse 0 22 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep3%20%28LK12%29.CNhs13571.12841-137B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12841-137B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_tpm_rev AorticSmsToFgf2_00hr45minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_reverse 1 22 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep3%20%28LK12%29.CNhs13571.12841-137B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12841-137B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6\ urlLabel FANTOM5 Details:\ dhcHumDerDenAncCcdsSynHighFreq CC Syn HiF bigBed 4 + Modern Human Derived (HighFreq), Denisova Ancestral: CCDS Syn 3 22 0 200 0 127 227 127 0 0 0 denisova 1 color 0,200,0\ longLabel Modern Human Derived (HighFreq), Denisova Ancestral: CCDS Syn\ parent dhcHumDerDenAncCcds off\ shortLabel CC Syn HiF\ subGroups view=Ccds subset=CcdsZLast_Syn freq=HighFreq\ track dhcHumDerDenAncCcdsSynHighFreq\ wgEncodeUwDnaseCd20ro01778HotspotsRep1 CD20+ Ht 1 broadPeak B cells CD20+ RO01778 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 22 0 0 0 127 127 127 0 0 0 regulation 1 longLabel B cells CD20+ RO01778 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel CD20+ Ht 1\ subGroups view=Hot cellType=t2BCELLSCD20RO01778 rep=rep1 treatment=None\ track wgEncodeUwDnaseCd20ro01778HotspotsRep1\ type broadPeak\ wgEncodeUwTfbsCd20ro01778InputStdRawRep1 CD20+78 In Sg 1 bigWig 1.000000 15457.000000 CD20+ RO01778 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 22 0 0 0 127 127 127 0 0 0 regulation 0 longLabel CD20+ RO01778 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel CD20+78 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t2BCELLSCD20RO01778 treatment=aNone rep=rep1\ track wgEncodeUwTfbsCd20ro01778InputStdRawRep1\ type bigWig 1.000000 15457.000000\ pgNA12878indel CEU NA12878 indel pgSnp CEU NA12878 indel (Complete Genomics) 0 22 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12878 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12878 indel\ subGroups view=C_CG id=BF_12878 type=Indel\ track pgNA12878indel\ wgEncodeHaibGenotypeCmkRegionsRep2 CMK 1 bed 9 + CMK Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB 0 22 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CMK Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel CMK 1\ subGroups cellType=t3CMK obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeCmkRegionsRep2\ type bed 9 +\ wgEncodeAwgDnaseUwCmkUniPk CMK DNase narrowPeak CMK DNaseI HS Uniform Peaks from ENCODE/Analysis 1 22 0 0 0 127 127 127 1 0 0 regulation 1 longLabel CMK DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel CMK DNase\ subGroups tier=a30 cellType=CMK\ track wgEncodeAwgDnaseUwCmkUniPk\ gtexEqtlTissueEsophagusMuscular esophagusMuscular bed 9 + Expression QTL in Esophagus_Muscularis from GTEx V6 0 22 205 170 125 230 212 190 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 205,170,125\ idInUrlSql select gene from gtexEqtlTissueEsophagusMuscular where name='%s'\ longLabel Expression QTL in Esophagus_Muscularis from GTEx V6\ parent gtexEqtlTissue on\ shortLabel esophagusMuscular\ track gtexEqtlTissueEsophagusMuscular\ wgEncodeHaibMethyl450Gm06990SitesRep1 GM06990 bed 9 GM06990 Methylation 450K Bead Array from ENCODE/HAIB 1 22 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel GM06990\ subGroups cellType=t3GM06990 obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450Gm06990SitesRep1\ type bed 9\ wgEncodeAwgTfbsHaibGm12878P300Pcr1xUniPk GM12878 EP300 h narrowPeak GM12878 TFBS Uniform Peaks of p300 from ENCODE/HudsonAlpha/Analysis 1 22 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of p300 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 EP300 h\ subGroups tier=a10 cellType=a10GM12878 factor=EP300 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878P300Pcr1xUniPk\ wgEncodeBroadHistoneGm12878H3k36me3StdSig GM12878 H3K36m3 bigWig 0.040000 11943.519531 GM12878 H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 22 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel GM12878 H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H3k36me3StdSig\ type bigWig 0.040000 11943.519531\ wgEncodeHaibTfbsGm12878Bclaf101388V0416101RawRep1 GM78 BCLAF1 1 bigWig 0.183709 124.371002 GM12878 BCLAF1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 22 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 BCLAF1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 BCLAF1 1\ subGroups view=RawSignal factor=BCLAF101388 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Bclaf101388V0416101RawRep1\ type bigWig 0.183709 124.371002\ wgEncodeCshlLongRnaSeqGm12878CytosolLongnonpolyaMinusRawSigRep2 GM78 cyt pA- - 2 bigWig 1.000000 7751126.000000 GM12878 cytosol polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 22 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 cytosol polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel GM78 cyt pA- - 2\ subGroups view=MinusSignal cellType=t1GM12878 localization=CYTOSOL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878CytosolLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 7751126.000000\ wgEncodeSydhTfbsGm12878Elk112771IggmusSig GM78 ELK1 IgM bigWig 1.000000 15938.000000 GM12878 ELK1 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 22 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ELK1 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 ELK1 IgM\ subGroups view=Signal factor=ELK112771 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Elk112771IggmusSig\ type bigWig 1.000000 15938.000000\ wgEncodeRikenCageGm12878NucleusPapPlusSignalRep2 GM78 nucl pA+ + 2 bigWig 1.000000 361501.000000 GM12878 nucleus polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 22 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleus polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel GM78 nucl pA+ + 2\ subGroups view=PlusRawSignal cellType=t1GM12878 localization=nucleus rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageGm12878NucleusPapPlusSignalRep2\ type bigWig 1.000000 361501.000000\ wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapMinusRawRep1 GM78 nucl TAP - 1 bigWig 1.000000 4227276.000000 GM12878 TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 22 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel GM78 nucl TAP - 1\ subGroups view=MinusSignal cellType=t1GM12878 localization=NUCLEUS protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapMinusRawRep1\ type bigWig 1.000000 4227276.000000\ wgEncodeCaltechRnaSeqH1hescR2x75Th1014Il200SigRep1V4 H1ES 2x75 Sg 1 bigWig 0.022200 76510.914062 H1-hESC 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech 2 22 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel H1ES 2x75 Sg 1\ subGroups view=Signal cellType=t1H1HESC insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR2x75Th1014Il200SigRep1V4\ type bigWig 0.022200 76510.914062\ wgEncodeSydhHistoneHct116H3k27acUcdSig HCT-116 H3K27ac bigWig 1.000000 4605.000000 HCT-116 H3K27ac Histone Modifications by ChIP-seq Signal from ENCODE/SYDH 2 22 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 H3K27ac Histone Modifications by ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel HCT-116 H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=cHCT116 control=UCD treatment=NONE\ track wgEncodeSydhHistoneHct116H3k27acUcdSig\ type bigWig 1.000000 4605.000000\ wgEncodeOpenChromFaireHelas3Ifna4hPk HeLa IFa FAIRE Pk narrowPeak HeLa-S3 IFNa 4hr FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 22 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 IFNa 4hr FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel HeLa IFa FAIRE Pk\ subGroups view=Peaks cellType=t2HELAS3 treatment=IFNa4h\ track wgEncodeOpenChromFaireHelas3Ifna4hPk\ type narrowPeak\ wgEncodeDukeAffyExonHelas3SimpleSignalRep1V2 HeLa-S3 1 bigBed 6 + HeLa-S3 Exon array Signal Rep 1 from ENCODE/Duke 0 22 0 119 158 127 187 206 1 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HeLa-S3 1\ subGroups cellType=t2HELAS3 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonHelas3SimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeUwRepliSeqHelas3S1PctSignalRep1 HeLa-S3 S1 1 bigWig 1.000000 100.000000 HeLa-S3 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 22 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HeLa-S3 S1 1\ subGroups view=v1PctSignal cellType=t2HELAS3 phase=p2S1 rep=rep1\ track wgEncodeUwRepliSeqHelas3S1PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeSunyAlbanyGeneStHepg2Pabpc1RbpAssocRnaV2 HepG2 PABPC1 broadPeak HepG2 PABPC1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 22 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 PABPC1 RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt off\ shortLabel HepG2 PABPC1\ subGroups cellType=t2HEPG2 factor=PABPC1\ track wgEncodeSunyAlbanyGeneStHepg2Pabpc1RbpAssocRnaV2\ type broadPeak\ snpArrayIlluminaHuman660W_Quad Illumina 660W-Q bed 6 + Illumina Human 660W-Quad 0 22 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Illumina Human 660W-Quad\ parent genotypeArrays\ priority 22\ shortLabel Illumina 660W-Q\ track snpArrayIlluminaHuman660W_Quad\ type bed 6 +\ snpArrayIlluminaHumanOmni1_Quad Illumina Omni1-Q bed 6 + Illumina Human Omni1-Quad 0 22 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Illumina Human Omni1-Quad\ parent genotypeArrays\ priority 22\ shortLabel Illumina Omni1-Q\ track snpArrayIlluminaHumanOmni1_Quad\ type bed 6 +\ wgEncodeOpenChromChipK562CmycBaseOverlapSignal K562 cMyc OS bigWig 0.000000 1968.000000 K562 cMyc TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 22 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 cMyc TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo\ shortLabel K562 cMyc OS\ subGroups treatment=AANONE view=SIGBO factor=CMYC cellType=t1K562\ track wgEncodeOpenChromChipK562CmycBaseOverlapSignal\ type bigWig 0.000000 1968.000000\ wgEncodeSunyRipSeqK562Elavl1Pk K562 ELAVL1 Pk broadPeak K562 ELAVL1 RIP-seq Analysis from ENCODE/SUNY 2 22 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ELAVL1 RIP-seq Analysis from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewPeaks on\ shortLabel K562 ELAVL1 Pk\ subGroups view=Peaks factor=ELAVL1 cellType=t1K562 rep=Pooled\ track wgEncodeSunyRipSeqK562Elavl1Pk\ type broadPeak\ wgEncodeUwHistoneK562H3k4me3StdRawRep1 K562 H3K4M3 Sg 1 bigWig 1.000000 4646.000000 K562 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 22 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig on\ shortLabel K562 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t1K562 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneK562H3k4me3StdRawRep1\ type bigWig 1.000000 4646.000000\ wgEncodeGisRnaPetK562NucleolusTotalMinusRawSigRep1 K562 nlus tot - 1 bigWig 1.000000 42871.000000 K562 nucleolus total clone-based RNA PET Minus signal Rep 1 from ENCODE/GIS 2 22 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleolus total clone-based RNA PET Minus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel K562 nlus tot - 1\ subGroups view=v2MinusRawSignal cellType=aK562 cloned=Based localization=nucleolus rnaExtract=total rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562NucleolusTotalMinusRawSigRep1\ type bigWig 1.000000 42871.000000\ wgEncodeOpenChromDnaseK562PkV2 K562 Pk narrowPeak K562 DNaseI HS Peaks from ENCODE/Duke 3 22 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks\ shortLabel K562 Pk\ subGroups view=Peaks cellType=t1K562 treatment=zNONE\ track wgEncodeOpenChromDnaseK562PkV2\ type narrowPeak\ wgEncodeUwDgfLhcnm2Hotspots LHCNM2 Hot broadPeak LHCN-M2 DNaseI DGF Hotspots from ENCODE/UW 0 22 0 0 0 127 127 127 0 0 0 regulation 1 longLabel LHCN-M2 DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel LHCNM2 Hot\ subGroups view=Hotspots cellType=t2LHCNM2 treatment=aNONE rep=rep1\ track wgEncodeUwDgfLhcnm2Hotspots\ type broadPeak\ phastConsElements46wayPlacental Mammal El bed 5 . Placental Mammal Conserved Elements 0 22 100 50 170 177 152 212 0 0 0 compGeno 1 color 100,50,170\ longLabel Placental Mammal Conserved Elements\ noInherit on\ parent cons46wayViewelements on\ priority 22\ shortLabel Mammal El\ subGroups view=elements clade=mammal\ track phastConsElements46wayPlacental\ type bed 5 .\ wgEncodeGisChiaPetMcf7Pol2SigRep2 MCF7 Pol2 Sig 2 bigWig 1.000000 7397.000000 MCF-7 Pol2 ChIA-PET Signal Rep 2 from ENCODE/GIS-Ruan 2 22 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Pol2 ChIA-PET Signal Rep 2 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetSignal off\ shortLabel MCF7 Pol2 Sig 2\ subGroups view=Signal factor=POL2 cellType=t2MCF7 rep=rep2\ track wgEncodeGisChiaPetMcf7Pol2SigRep2\ type bigWig 1.000000 7397.000000\ wgEncodeAffyRnaChipFiltTransfragsKeratinocyteCytosolLongpolya NHEK cyto pA+ broadPeak NHEK cytosol polyA+ Microarray Transfrags from ENCODE Affy/CSHL 3 22 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK cytosol polyA+ Microarray Transfrags from ENCODE Affy/CSHL\ noInherit on\ parent wgEncodeAffyRnaChipViewFiltTransfrags off\ shortLabel NHEK cyto pA+\ subGroups view=FiltTransfrags cellType=t3NHEK localization=bCYTOSOL rnaExtract=longPolyA\ track wgEncodeAffyRnaChipFiltTransfragsKeratinocyteCytosolLongpolya\ type broadPeak\ burgeRnaSeqGemMapperAlignBreastAllRawSignal RNA-seq Breast Sig bedGraph 4 Burge Lab RNA-seq 32mer Reads from Breast, Raw Signal 2 22 46 0 184 150 127 219 0 0 0 expression 0 longLabel Burge Lab RNA-seq 32mer Reads from Breast, Raw Signal\ parent burgeRnaSeqGemMapperAlignViewRawSignal on\ shortLabel RNA-seq Breast Sig\ subGroups view=RawSignal tissueType=breast\ track burgeRnaSeqGemMapperAlignBreastAllRawSignal\ Agilent_Human_Exon_Clinical_Research_Covered SureSel. Clinical P bigBed Agilent - SureSelect Clinical Research Exome Covered by Probes 0 22 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S06588914_Covered.bb\ color 120,94,240\ longLabel Agilent - SureSelect Clinical Research Exome Covered by Probes\ parent exomeProbesets off\ shortLabel SureSel. Clinical P\ track Agilent_Human_Exon_Clinical_Research_Covered\ type bigBed\ lincRNAsCTWhiteBloodCell WhiteBloodCell bed 5 + lincRNAs from whitebloodcell 1 22 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from whitebloodcell\ parent lincRNAsAllCellType on\ shortLabel WhiteBloodCell\ subGroups view=lincRNAsRefseqExp tissueType=whitebloodcell\ track lincRNAsCTWhiteBloodCell\ chainSusScr2 susScr2 Chain chain susScr2 Pig (Nov. 2009 (SGSC Sscrofa9.2/susScr2)) Chained Alignments 3 23 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Pig (Nov. 2009 (SGSC Sscrofa9.2/susScr2)) Chained Alignments\ otherDb susScr2\ parent placentalChainNetViewchain off\ shortLabel susScr2 Chain\ subGroups view=chain species=s071 clade=c02\ track chainSusScr2\ type chain susScr2\ chainGasAcu1 Stickleback Chain chain gasAcu1 Stickleback (Feb. 2006 (Broad/gasAcu1)) Chained Alignments 3 23 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Stickleback (Feb. 2006 (Broad/gasAcu1)) Chained Alignments\ otherDb gasAcu1\ parent vertebrateChainNetViewchain off\ shortLabel Stickleback Chain\ subGroups view=chain species=s049 clade=c06\ track chainGasAcu1\ type chain gasAcu1\ phastConsElements100way 100 Vert. El bed 5 . 100 vertebrates Conserved Elements 0 23 110 10 40 182 132 147 0 0 0 compGeno 1 color 110,10,40\ longLabel 100 vertebrates Conserved Elements\ noInherit on\ parent cons100wayViewelements off\ priority 23\ shortLabel 100 Vert. El\ subGroups view=elements clade=all\ track phastConsElements100way\ type bed 5 .\ wgEncodeHaibRnaSeqA549Etoh02RawRep2 A549 ETOH 2 bigWig 0.228926 1241.689941 A549 ETOH 1 hr 0.02% RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 23 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 ETOH 1 hr 0.02% RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel A549 ETOH 2\ subGroups view=RawSignal cellType=t2A549 treatment=ETOH02 rep=rep2\ track wgEncodeHaibRnaSeqA549Etoh02RawRep2\ type bigWig 0.228926 1241.689941\ encTfChipPkENCFF044XMF A549 KDM1A narrowPeak Transcription Factor ChIP-seq Peaks of KDM1A in A549 from ENCODE 3 (ENCFF044XMF) 1 23 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of KDM1A in A549 from ENCODE 3 (ENCFF044XMF)\ parent encTfChipPk off\ shortLabel A549 KDM1A\ subGroups cellType=A549 factor=KDM1A\ track encTfChipPkENCFF044XMF\ wgEncodeHaibMethylRrbsAg04450UwSitesRep1 AG04450 1 bed 9 + AG04450 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 23 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel AG04450 1\ subGroups cellType=t3AG04450 obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsAg04450UwSitesRep1\ type bed 9 +\ wgEncodeUwAffyExonArrayAg10803SimpleSignalRep2 AG10803 2 broadPeak AG10803 Exon array Signal Rep 2 from ENCODE/UW 0 23 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG10803 Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel AG10803 2\ subGroups cellType=t3AG10803 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayAg10803SimpleSignalRep2\ type broadPeak\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep1LK13_CNhs12741_ctss_fwd AorticSmsToFgf2_01hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep1 (LK13)_CNhs12741_12646-134G9_forward 0 23 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12646-134G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep1%20%28LK13%29.CNhs12741.12646-134G9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep1 (LK13)_CNhs12741_12646-134G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12646-134G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_01hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep1LK13_CNhs12741_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12646-134G9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep1LK13_CNhs12741_tpm_fwd AorticSmsToFgf2_01hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep1 (LK13)_CNhs12741_12646-134G9_forward 1 23 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12646-134G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep1%20%28LK13%29.CNhs12741.12646-134G9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep1 (LK13)_CNhs12741_12646-134G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12646-134G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_01hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep1LK13_CNhs12741_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12646-134G9\ urlLabel FANTOM5 Details:\ wgEncodeAwgDnaseUwCaco2UniPk Caco-2 DNase narrowPeak Caco-2 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 23 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Caco-2 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Caco-2 DNase\ subGroups tier=a30 cellType=Caco-2\ track wgEncodeAwgDnaseUwCaco2UniPk\ wgEncodeUwDnaseCd20ro01778PkRep1 CD20+ Pk 1 narrowPeak B cells CD20+ RO01778 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 23 0 0 0 127 127 127 0 0 0 regulation 1 longLabel B cells CD20+ RO01778 DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel CD20+ Pk 1\ subGroups view=Peaks cellType=t2BCELLSCD20RO01778 rep=rep1 treatment=None\ track wgEncodeUwDnaseCd20ro01778PkRep1\ type narrowPeak\ wgEncodeUwTfbsCd20ro01794InputStdRawRep1 CD20+94 In Sg 1 bigWig 1.000000 15322.000000 CD20+ RO01794 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 23 0 0 0 127 127 127 0 0 0 regulation 0 longLabel CD20+ RO01794 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel CD20+94 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t2BCELLSCD20RO01794 treatment=aNone rep=rep1\ track wgEncodeUwTfbsCd20ro01794InputStdRawRep1\ type bigWig 1.000000 15322.000000\ pgNA12891CG CEU NA12891 pgSnp CEU pedigree 1463, NA12891 (Complete Genomics) 0 23 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU pedigree 1463, NA12891 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12891\ subGroups view=C_CG id=BG_12891 type=SNP\ track pgNA12891CG\ wgEncodeHaibGenotypeGm06990RegionsRep1 GM06990 1 bed 9 + GM06990 Copy number variants Replicate 1 from ENCODE/HAIB 0 23 0 0 0 127 127 127 0 0 0 varRep 1 longLabel GM06990 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel GM06990 1\ subGroups cellType=t3GM06990 obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeGm06990RegionsRep1\ type bed 9 +\ wgEncodeAwgTfbsSydhGm12878P300IggmusUniPk GM12878 EP300 s narrowPeak GM12878 TFBS Uniform Peaks of p300 from ENCODE/Stanford/Analysis 1 23 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of p300 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 EP300 s\ subGroups tier=a10 cellType=a10GM12878 factor=EP300 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878P300IggmusUniPk\ wgEncodeBroadHistoneGm12878H3k79me2StdPk GM12878 H3K79m2 broadPeak GM12878 H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 23 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel GM12878 H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H3k79me2StdPk\ type broadPeak\ wgEncodeHaibMethyl450Gm12891SitesRep1 GM12891 bed 9 GM12891 Methylation 450K Bead Array from ENCODE/HAIB 1 23 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel GM12891\ subGroups cellType=t3GM12891 obtainedBy=HAIB treatment=zNONE\ track wgEncodeHaibMethyl450Gm12891SitesRep1\ type bed 9\ wgEncodeHaibTfbsGm12878Bclaf101388V0416101PkRep2 GM78 BCLAF1 2 broadPeak GM12878 BCLAF1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 23 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 BCLAF1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 BCLAF1 2\ subGroups view=Peaks factor=BCLAF101388 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Bclaf101388V0416101PkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqGm12878CytosolLongnonpolyaPlusRawSigRep1 GM78 cyt pA- + 1 bigWig 1.000000 18182836.000000 GM12878 cytosol polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 23 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 cytosol polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel GM78 cyt pA- + 1\ subGroups view=PlusSignal cellType=t1GM12878 localization=CYTOSOL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878CytosolLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 18182836.000000\ wgEncodeSydhTfbsGm12878ErraIggrabPk GM78 ERRA IgR narrowPeak GM12878 ERRA IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 23 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ERRA IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 ERRA IgR\ subGroups view=Peaks factor=ERRA cellType=t1GM12878 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsGm12878ErraIggrabPk\ type narrowPeak\ wgEncodeRikenCageGm12878NucleusPapMinusSignalRep1 GM78 nucl pA+ - 1 bigWig 1.000000 110366.000000 GM12878 nucleus polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 23 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleus polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel GM78 nucl pA+ - 1\ subGroups view=MinusRawSignal cellType=t1GM12878 localization=nucleus rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageGm12878NucleusPapMinusSignalRep1\ type bigWig 1.000000 110366.000000\ wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapMinusRawRep2 GM78 nucl TAP - 2 bigWig 1.000000 9536975.000000 GM12878 TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 23 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel GM78 nucl TAP - 2\ subGroups view=MinusSignal cellType=t1GM12878 localization=NUCLEUS protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapMinusRawRep2\ type bigWig 1.000000 9536975.000000\ wgEncodeCaltechRnaSeqH1hescR2x75Th1014Il200SigRep2V4 H1ES 2x75 Sg 2 bigWig 0.025000 89564.164062 H1-hESC 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech 2 23 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel H1ES 2x75 Sg 2\ subGroups view=Signal cellType=t1H1HESC insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR2x75Th1014Il200SigRep2V4\ type bigWig 0.025000 89564.164062\ wgEncodeSydhHistoneHct116InputUcdSig HCT-116 Input bigWig 1.000000 23558.000000 HCT-116 Input Histone Modifications by ChIP-seq Signal from ENCODE/SYDH 2 23 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 Input Histone Modifications by ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel HCT-116 Input\ subGroups view=Signal factor=INPUT cellType=cHCT116 control=UCD treatment=NONE\ track wgEncodeSydhHistoneHct116InputUcdSig\ type bigWig 1.000000 23558.000000\ gtexEqtlTissueHeartAtrialAppend heartAtrialAppend bed 9 + Expression QTL in Heart_Atrial_Appendage from GTEx V6 0 23 180 82 205 217 168 230 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 180,82,205\ idInUrlSql select gene from gtexEqtlTissueHeartAtrialAppend where name='%s'\ longLabel Expression QTL in Heart_Atrial_Appendage from GTEx V6\ parent gtexEqtlTissue on\ shortLabel heartAtrialAppend\ track gtexEqtlTissueHeartAtrialAppend\ wgEncodeOpenChromFaireHelas3Ifna4hSig HeLa IFa FAIRE DS bigWig 0.000000 0.670000 HeLa-S3 IFNa 4hr FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 23 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 IFNa 4hr FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel HeLa IFa FAIRE DS\ subGroups view=SIG cellType=t2HELAS3 treatment=IFNa4h\ track wgEncodeOpenChromFaireHelas3Ifna4hSig\ type bigWig 0.000000 0.670000\ wgEncodeDukeAffyExonHelas3SimpleSignalRep2V2 HeLa-S3 2 bigBed 6 + HeLa-S3 Exon array Signal Rep 2 from ENCODE/Duke 0 23 0 119 158 127 187 206 1 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HeLa-S3 2\ subGroups cellType=t2HELAS3 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonHelas3SimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeUwRepliSeqHelas3S2PctSignalRep1 HeLa-S3 S2 1 bigWig 1.000000 100.000000 HeLa-S3 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 23 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HeLa-S3 S2 1\ subGroups view=v1PctSignal cellType=t2HELAS3 phase=p3S2 rep=rep1\ track wgEncodeUwRepliSeqHelas3S2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeSunyAlbanyGeneStHepg2T7tagRbpAssocRnaV2 HepG2 T7Tag broadPeak HepG2 T7Tag RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 23 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 T7Tag RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt off\ shortLabel HepG2 T7Tag\ subGroups cellType=t2HEPG2 factor=T7Tag\ track wgEncodeSunyAlbanyGeneStHepg2T7tagRbpAssocRnaV2\ type broadPeak\ snpArrayIlluminaGDA Illumina GDA bed 6 + Illumina GDA 0 23 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Illumina GDA\ parent genotypeArrays\ priority 23\ shortLabel Illumina GDA\ track snpArrayIlluminaGDA\ type bed 6 +\ wgEncodeOpenChromChipK562CtcfPk K562 CTCF Pk narrowPeak K562 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 23 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks\ shortLabel K562 CTCF Pk\ subGroups treatment=AANONE view=Peaks factor=CTCF cellType=t1K562\ track wgEncodeOpenChromChipK562CtcfPk\ type narrowPeak\ wgEncodeOpenChromDnaseK562SigV2 K562 DS bigWig 0.000000 1.153500 K562 DNaseI HS Density Signal from ENCODE/Duke 2 23 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal\ shortLabel K562 DS\ subGroups view=SIG cellType=t1K562 treatment=zNONE\ track wgEncodeOpenChromDnaseK562SigV2\ type bigWig 0.000000 1.153500\ wgEncodeSunyRipSeqK562Elavl1SigRep1 K562 ELAVL1 1 bigWig 0.000000 64478.648438 K562 ELAVL1 RIP-seq Signal Rep 1 from ENCODE/SUNY 2 23 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ELAVL1 RIP-seq Signal Rep 1 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewSignal off\ shortLabel K562 ELAVL1 1\ subGroups view=Signal factor=ELAVL1 cellType=t1K562 rep=rep1\ track wgEncodeSunyRipSeqK562Elavl1SigRep1\ type bigWig 0.000000 64478.648438\ wgEncodeUwHistoneK562H3k4me3StdHotspotsRep2 K562 H3K4M3 Ht 2 broadPeak K562 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 23 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot on\ shortLabel K562 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t1K562 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneK562H3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeGisRnaPetK562NucleolusTotalPlusRawSigRep1 K562 nlus tot + 1 bigWig 1.000000 24616.000000 K562 nucleolus total clone-based RNA PET Plus signal Rep 1 from ENCODE/GIS 2 23 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleolus total clone-based RNA PET Plus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel K562 nlus tot + 1\ subGroups view=v2PlusRawSignal cellType=aK562 cloned=Based localization=nucleolus rnaExtract=total rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562NucleolusTotalPlusRawSigRep1\ type bigWig 1.000000 24616.000000\ wgEncodeUwDgfLhcnm2Diff4dPk LHCNM2 DIFF4d Pk narrowPeak LHCN-M2 DIFF 4 d DNaseI DGF Peaks from ENCODE/UW 0 23 0 0 0 127 127 127 0 0 0 regulation 1 longLabel LHCN-M2 DIFF 4 d DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel LHCNM2 DIFF4d Pk\ subGroups view=Peaks cellType=t2LHCNM2 treatment=DIFF4D rep=rep1\ track wgEncodeUwDgfLhcnm2Diff4dPk\ type narrowPeak\ wgEncodeGisChiaPetMcf7Pol2InteractionsRep3 MCF7 Pol2 Int 3 bed 12 MCF-7 Pol2 ChIA-PET Interactions Rep 3 from ENCODE/GIS-Ruan 2 23 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 Pol2 ChIA-PET Interactions Rep 3 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetInteractions off\ shortLabel MCF7 Pol2 Int 3\ subGroups view=Interactions factor=POL2 cellType=t2MCF7 rep=rep3\ track wgEncodeGisChiaPetMcf7Pol2InteractionsRep3\ type bed 12\ wgEncodeAffyRnaChipFiltTransfragsKeratinocyteNucleusLongnonpolya NHEK nucl pA- broadPeak NHEK nucleus polyA- Microarray Transfrags from ENCODE Affy/CSHL 3 23 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK nucleus polyA- Microarray Transfrags from ENCODE Affy/CSHL\ parent wgEncodeAffyRnaChipViewFiltTransfrags off\ shortLabel NHEK nucl pA-\ subGroups view=FiltTransfrags cellType=t3NHEK localization=dNUCLEUS rnaExtract=longNonPolyA\ track wgEncodeAffyRnaChipFiltTransfragsKeratinocyteNucleusLongnonpolya\ type broadPeak\ dhcHumDerDenAncRegMotifHighInfoFixed RgMoHiInf Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: High Inf Pos in TFBP 3 23 230 60 0 242 157 127 0 0 0 denisova 1 color 230,60,0\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: High Inf Pos in TFBP\ parent dhcHumDerDenAncReg\ shortLabel RgMoHiInf Fxd\ subGroups view=Reg subset=DA_RegMotifHighInfo freq=Fixed\ track dhcHumDerDenAncRegMotifHighInfoFixed\ burgeRnaSeqGemMapperAlignColonAllRawSignal RNA-seq Colon Sig bedGraph 4 Burge Lab RNA-seq 32mer Reads from Colon, Raw Signal 2 23 46 0 184 150 127 219 0 0 0 expression 0 longLabel Burge Lab RNA-seq 32mer Reads from Colon, Raw Signal\ parent burgeRnaSeqGemMapperAlignViewRawSignal off\ shortLabel RNA-seq Colon Sig\ subGroups view=RawSignal tissueType=colon\ track burgeRnaSeqGemMapperAlignColonAllRawSignal\ Agilent_Human_Exon_Clinical_Research_Regions SureSel. Clinical T bigBed Agilent - SureSelect Clinical Research Exome Target Regions 0 23 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S06588914_Regions.bb\ color 120,94,240\ longLabel Agilent - SureSelect Clinical Research Exome Target Regions\ parent exomeProbesets off\ shortLabel SureSel. Clinical T\ track Agilent_Human_Exon_Clinical_Research_Regions\ type bigBed\ phastConsElements46way Vertebrate El bed 5 . Vertebrate Conserved Elements 0 23 170 100 50 212 177 152 0 0 0 compGeno 1 color 170,100,50\ longLabel Vertebrate Conserved Elements\ noInherit on\ parent cons46wayViewelements off\ priority 23\ shortLabel Vertebrate El\ subGroups view=elements clade=vert\ track phastConsElements46way\ type bed 5 .\ netSusScr2 susScr2 Net netAlign susScr2 chainSusScr2 Pig (Nov. 2009 (SGSC Sscrofa9.2/susScr2)) Alignment Net 1 24 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Pig (Nov. 2009 (SGSC Sscrofa9.2/susScr2)) Alignment Net\ otherDb susScr2\ parent placentalChainNetViewnet off\ shortLabel susScr2 Net\ subGroups view=net species=s071 clade=c02\ track netSusScr2\ type netAlign susScr2 chainSusScr2\ netGasAcu1 Stickleback Net netAlign gasAcu1 chainGasAcu1 Stickleback (Feb. 2006 (Broad/gasAcu1)) Alignment Net 1 24 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Stickleback (Feb. 2006 (Broad/gasAcu1)) Alignment Net\ otherDb gasAcu1\ parent vertebrateChainNetViewnet off\ shortLabel Stickleback Net\ subGroups view=net species=s049 clade=c06\ track netGasAcu1\ type netAlign gasAcu1 chainGasAcu1\ wgEncodeHaibRnaSeqA549Etoh02AlnRep2 A549 ETOH 2 bam A549 ETOH 1 hr 0.02% RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 24 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 ETOH 1 hr 0.02% RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel A549 ETOH 2\ subGroups view=Alignments cellType=t2A549 treatment=ETOH02 rep=rep2\ track wgEncodeHaibRnaSeqA549Etoh02AlnRep2\ type bam\ encTfChipPkENCFF397TFF A549 KDM5A narrowPeak Transcription Factor ChIP-seq Peaks of KDM5A in A549 from ENCODE 3 (ENCFF397TFF) 1 24 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of KDM5A in A549 from ENCODE 3 (ENCFF397TFF)\ parent encTfChipPk off\ shortLabel A549 KDM5A\ subGroups cellType=A549 factor=KDM5A\ track encTfChipPkENCFF397TFF\ wgEncodeHaibMethylRrbsAg04450UwSitesRep2 AG04450 2 bed 9 + AG04450 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 24 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel AG04450 2\ subGroups cellType=t3AG04450 obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsAg04450UwSitesRep2\ type bed 9 +\ wgEncodeUwAffyExonArrayAoafSimpleSignalRep1 AoAF 1 broadPeak AoAF Exon array Signal Rep 1 from ENCODE/UW 0 24 0 0 0 127 127 127 0 0 0 expression 1 longLabel AoAF Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel AoAF 1\ subGroups cellType=t3AOAF rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayAoafSimpleSignalRep1\ type broadPeak\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep1LK13_CNhs12741_ctss_rev AorticSmsToFgf2_01hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep1 (LK13)_CNhs12741_12646-134G9_reverse 0 24 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12646-134G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep1%20%28LK13%29.CNhs12741.12646-134G9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep1 (LK13)_CNhs12741_12646-134G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12646-134G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_01hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep1LK13_CNhs12741_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12646-134G9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep1LK13_CNhs12741_tpm_rev AorticSmsToFgf2_01hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep1 (LK13)_CNhs12741_12646-134G9_reverse 1 24 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12646-134G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep1%20%28LK13%29.CNhs12741.12646-134G9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep1 (LK13)_CNhs12741_12646-134G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12646-134G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_01hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep1LK13_CNhs12741_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12646-134G9\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseCd20ro01778RawRep1 CD20+ Sg 1 bigWig 1.000000 17468.000000 B cells CD20+ RO01778 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 24 0 0 0 127 127 127 0 0 0 regulation 0 longLabel B cells CD20+ RO01778 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel CD20+ Sg 1\ subGroups view=zRSig cellType=t2BCELLSCD20RO01778 rep=rep1 treatment=None\ track wgEncodeUwDnaseCd20ro01778RawRep1\ type bigWig 1.000000 17468.000000\ pgNA12891indel CEU NA12891 indel pgSnp CEU NA12891 indel (Complete Genomics) 0 24 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12891 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12891 indel\ subGroups view=C_CG id=BG_12891 type=Indel\ track pgNA12891indel\ wgEncodeAwgDnaseDukeChorionUniPk Chorion DNase narrowPeak Chorion DNaseI HS Uniform Peaks from ENCODE/Analysis 1 24 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Chorion DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Chorion DNase\ subGroups tier=a30 cellType=Chorion\ track wgEncodeAwgDnaseDukeChorionUniPk\ wgEncodeAwgTfbsSydhGm12878P300bUniPk GM12878 EP300 s2 narrowPeak GM12878 TFBS Uniform Peaks of p300_(SC-584) from ENCODE/Stanford/Analysis 1 24 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of p300_(SC-584) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 EP300 s2\ subGroups tier=a10 cellType=a10GM12878 factor=EP300 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878P300bUniPk\ wgEncodeBroadHistoneGm12878H3k79me2StdSig GM12878 H3K79m2 bigWig 0.040000 2011.920044 GM12878 H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 24 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel GM12878 H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H3k79me2StdSig\ type bigWig 0.040000 2011.920044\ wgEncodeHaibGenotypeGm12891RegionsRep2 GM12891 1 bed 9 + GM12891 Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB 0 24 0 0 0 127 127 127 0 0 0 varRep 1 longLabel GM12891 Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel GM12891 1\ subGroups cellType=t3GM12891 obtainedBy=HudsonAlpha treatment=None rep=rep1\ track wgEncodeHaibGenotypeGm12891RegionsRep2\ type bed 9 +\ wgEncodeHaibMethyl450Gm12892SitesRep1 GM12892 bed 9 GM12892 Methylation 450K Bead Array from ENCODE/HAIB 1 24 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel GM12892\ subGroups cellType=t3GM12892 obtainedBy=HAIB treatment=zNONE\ track wgEncodeHaibMethyl450Gm12892SitesRep1\ type bed 9\ wgEncodeHaibTfbsGm12878Bclaf101388V0416101RawRep2 GM78 BCLAF1 2 bigWig 0.150221 104.178001 GM12878 BCLAF1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 24 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 BCLAF1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 BCLAF1 2\ subGroups view=RawSignal factor=BCLAF101388 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Bclaf101388V0416101RawRep2\ type bigWig 0.150221 104.178001\ wgEncodeCshlLongRnaSeqGm12878CytosolLongnonpolyaPlusRawSigRep2 GM78 cyt pA- + 2 bigWig 1.000000 24327980.000000 GM12878 cytosol polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 24 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 cytosol polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel GM78 cyt pA- + 2\ subGroups view=PlusSignal cellType=t1GM12878 localization=CYTOSOL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878CytosolLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 24327980.000000\ wgEncodeSydhTfbsGm12878ErraIggrabSig GM78 ERRA IgR bigWig 1.000000 528.000000 GM12878 ERRA IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 24 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ERRA IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 ERRA IgR\ subGroups view=Signal factor=ERRA cellType=t1GM12878 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsGm12878ErraIggrabSig\ type bigWig 1.000000 528.000000\ wgEncodeRikenCageGm12878NucleusPapMinusSignalRep2 GM78 nucl pA+ - 2 bigWig 1.000000 106130.000000 GM12878 nucleus polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 24 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleus polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel GM78 nucl pA+ - 2\ subGroups view=MinusRawSignal cellType=t1GM12878 localization=nucleus rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageGm12878NucleusPapMinusSignalRep2\ type bigWig 1.000000 106130.000000\ wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapPlusRawRep1 GM78 nucl TAP + 1 bigWig 1.000000 805250.000000 GM12878 TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 24 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel GM78 nucl TAP + 1\ subGroups view=PlusSignal cellType=t1GM12878 localization=NUCLEUS protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapPlusRawRep1\ type bigWig 1.000000 805250.000000\ wgEncodeCaltechRnaSeqH1hescR2x75Th1014Il200SigRep3V4 H1ES 2x75 Sg 3 bigWig 0.024300 98884.000000 H1-hESC 200 bp paired read RNA-seq Signal Rep 3 from ENCODE/Caltech 2 24 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC 200 bp paired read RNA-seq Signal Rep 3 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel H1ES 2x75 Sg 3\ subGroups view=Signal cellType=t1H1HESC insertLength=il200 readType=a1R2x75 rep=rep3 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR2x75Th1014Il200SigRep3V4\ type bigWig 0.024300 98884.000000\ gtexEqtlTissueHeartLeftVentricl heartLeftVentricl bed 9 + Expression QTL in Heart_Left_Ventricle from GTEx V6 0 24 122 55 139 188 155 197 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 122,55,139\ idInUrlSql select gene from gtexEqtlTissueHeartLeftVentricl where name='%s'\ longLabel Expression QTL in Heart_Left_Ventricle from GTEx V6\ parent gtexEqtlTissue on\ shortLabel heartLeftVentricl\ track gtexEqtlTissueHeartLeftVentricl\ wgEncodeOpenChromFaireHelas3Ifna4hBaseOverlapSignal HeLa IFa FAIRE OS bigWig 0.000000 1431.000000 HeLa-S3 IFNa 4hr FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 24 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 IFNa 4hr FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel HeLa IFa FAIRE OS\ subGroups view=SIGBO cellType=t2HELAS3 treatment=IFNa4h\ track wgEncodeOpenChromFaireHelas3Ifna4hBaseOverlapSignal\ type bigWig 0.000000 1431.000000\ wgEncodeDukeAffyExonHelas3SimpleSignalRep3V2 HeLa-S3 3 bigBed 6 + HeLa-S3 Exon array Signal Rep 3 from ENCODE/Duke 0 24 0 119 158 127 187 206 1 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HeLa-S3 3\ subGroups cellType=t2HELAS3 treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonHelas3SimpleSignalRep3V2\ type bigBed 6 +\ wgEncodeUwRepliSeqHelas3S3PctSignalRep1 HeLa-S3 S3 1 bigWig 1.000000 100.000000 HeLa-S3 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 24 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HeLa-S3 S3 1\ subGroups view=v1PctSignal cellType=t2HELAS3 phase=p4S3 rep=rep1\ track wgEncodeUwRepliSeqHelas3S3PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeUwTfbsHelas3CtcfStdHotspotsRep1 HeLaS3 CTCF Ht 1 broadPeak HeLa-S3 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 24 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HeLaS3 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t2HELAS3 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHelas3CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeSunyAlbanyGeneStHepg2RipinputRbpAssocRnaV2 HepG2 RIP-Input broadPeak HepG2 RIP-Input RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY 0 24 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 RIP-Input RBP Associated RNA by RIP-chip GeneST from ENCODE/SUNY\ origAssembly hg18\ parent wgEncodeSunyAlbanyGeneSt off\ shortLabel HepG2 RIP-Input\ subGroups cellType=t2HEPG2 factor=ripInput\ track wgEncodeSunyAlbanyGeneStHepg2RipinputRbpAssocRnaV2\ type broadPeak\ snpArrayIllumina450k Illumina 450k bigBed 4 Illumina 450k Methylation Array 0 24 0 0 0 127 127 127 0 0 0 varRep 1 bigDataUrl /gbdb/hg19/bbi/illumina/illumina450K.bb\ longLabel Illumina 450k Methylation Array\ parent genotypeArrays\ priority 24\ shortLabel Illumina 450k\ track snpArrayIllumina450k\ type bigBed 4\ wgEncodeOpenChromChipK562CtcfSig K562 CTCF DS bigWig 0.000000 6.820800 K562 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 24 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal\ shortLabel K562 CTCF DS\ subGroups treatment=AANONE view=SIG factor=CTCF cellType=t1K562\ track wgEncodeOpenChromChipK562CtcfSig\ type bigWig 0.000000 6.820800\ wgEncodeSunyRipSeqK562Elavl1SigRep2 K562 ELAVL1 2 bigWig 0.000000 65775.945312 K562 ELAVL1 RIP-seq Signal Rep 2 from ENCODE/SUNY 2 24 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ELAVL1 RIP-seq Signal Rep 2 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewSignal off\ shortLabel K562 ELAVL1 2\ subGroups view=Signal factor=ELAVL1 cellType=t1K562 rep=rep2\ track wgEncodeSunyRipSeqK562Elavl1SigRep2\ type bigWig 0.000000 65775.945312\ wgEncodeUwHistoneK562H3k4me3StdPkRep2 K562 H3K4M3 Pk 2 narrowPeak K562 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 24 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks on\ shortLabel K562 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t1K562 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneK562H3k4me3StdPkRep2\ type narrowPeak\ wgEncodeGisRnaPetK562NucleolusTotalAlnRep1 K562 nlus tot A 1 bam K562 nucleolus total clone-based RNA PET Alignments Rep 1 from ENCODE/GIS 0 24 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleolus total clone-based RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel K562 nlus tot A 1\ subGroups view=v3Alignments cellType=aK562 cloned=Based localization=nucleolus rnaExtract=total rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562NucleolusTotalAlnRep1\ type bam\ wgEncodeOpenChromDnaseK562BaseOverlapSignalV2 K562 OS bigWig 0.000000 352.000000 K562 DNaseI HS Overlap Signal from ENCODE/Duke 2 24 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo\ shortLabel K562 OS\ subGroups view=SIGBO cellType=t1K562 treatment=zNONE\ track wgEncodeOpenChromDnaseK562BaseOverlapSignalV2\ type bigWig 0.000000 352.000000\ wgEncodeUwDgfLhcnm2Pk LHCNM2 Pk narrowPeak LHCN-M2 DNaseI DGF Peaks from ENCODE/UW 0 24 0 0 0 127 127 127 0 0 0 regulation 1 longLabel LHCN-M2 DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel LHCNM2 Pk\ subGroups view=Peaks cellType=t2LHCNM2 treatment=aNONE rep=rep1\ track wgEncodeUwDgfLhcnm2Pk\ type narrowPeak\ wgEncodeGisChiaPetMcf7Pol2SigRep3 MCF7 Pol2 Sig 3 bigWig 1.000000 3269.000000 MCF-7 Pol2 ChIA-PET Signal Rep 3 from ENCODE/GIS-Ruan 2 24 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Pol2 ChIA-PET Signal Rep 3 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetSignal off\ shortLabel MCF7 Pol2 Sig 3\ subGroups view=Signal factor=POL2 cellType=t2MCF7 rep=rep3\ track wgEncodeGisChiaPetMcf7Pol2SigRep3\ type bigWig 1.000000 3269.000000\ wgEncodeAffyRnaChipFiltTransfragsKeratinocyteNucleusLongpolya NHEK nucl pA+ broadPeak NHEK nucleus polyA+ Microarray Transfrags from ENCODE Affy/CSHL 3 24 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK nucleus polyA+ Microarray Transfrags from ENCODE Affy/CSHL\ parent wgEncodeAffyRnaChipViewFiltTransfrags off\ shortLabel NHEK nucl pA+\ subGroups view=FiltTransfrags cellType=t3NHEK localization=dNUCLEUS rnaExtract=longPolyA\ track wgEncodeAffyRnaChipFiltTransfragsKeratinocyteNucleusLongpolya\ type broadPeak\ wgEncodeSydhHistoneNt2d1H3k4me1UcdPk NT2-D1 H3K4me1 narrowPeak NT2D1 H3K4me1 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 24 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2D1 H3K4me1 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks on\ shortLabel NT2-D1 H3K4me1\ subGroups view=Peaks factor=H3K04ME1 cellType=cNT2D1 control=UCD treatment=NONE\ track wgEncodeSydhHistoneNt2d1H3k4me1UcdPk\ type narrowPeak\ dhcHumDerDenAncRegMotifHighInfoFixedDbSnp RgMoHiInf FxS bigBed 4 + Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: High Inf Pos in TFBP 3 24 230 60 0 242 157 127 0 0 0 denisova 1 color 230,60,0\ longLabel Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: High Inf Pos in TFBP\ parent dhcHumDerDenAncReg\ shortLabel RgMoHiInf FxS\ subGroups view=Reg subset=DA_RegMotifHighInfo freq=FixedDbSnp\ track dhcHumDerDenAncRegMotifHighInfoFixedDbSnp\ burgeRnaSeqGemMapperAlignHeartAllRawSignal RNA-seq Heart Sig bedGraph 4 Burge Lab RNA-seq 32mer Reads from Heart, Raw Signal 2 24 46 0 184 150 127 219 0 0 0 expression 0 longLabel Burge Lab RNA-seq 32mer Reads from Heart, Raw Signal\ parent burgeRnaSeqGemMapperAlignViewRawSignal on\ shortLabel RNA-seq Heart Sig\ subGroups view=RawSignal tissueType=heart\ track burgeRnaSeqGemMapperAlignHeartAllRawSignal\ Agilent_Human_Exon_Clinical_Research_V2_Covered SureSel. Clinical V2 P bigBed Agilent - SureSelect Clinical Research Exome V2 Covered by Probes 0 24 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S30409818_Covered.bb\ color 120,94,240\ longLabel Agilent - SureSelect Clinical Research Exome V2 Covered by Probes\ parent exomeProbesets on\ shortLabel SureSel. Clinical V2 P\ track Agilent_Human_Exon_Clinical_Research_V2_Covered\ type bigBed\ chainOryLat2 Medaka Chain chain oryLat2 Medaka (Oct. 2005 (NIG/UT MEDAKA1/oryLat2)) Chained Alignments 3 25 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Medaka (Oct. 2005 (NIG/UT MEDAKA1/oryLat2)) Chained Alignments\ otherDb oryLat2\ parent vertebrateChainNetViewchain off\ shortLabel Medaka Chain\ subGroups view=chain species=s051 clade=c06\ track chainOryLat2\ type chain oryLat2\ chainVicPac2 Alpaca Chain chain vicPac2 Alpaca (Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2)) Chained Alignments 3 25 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Alpaca (Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2)) Chained Alignments\ otherDb vicPac2\ parent placentalChainNetViewchain off\ shortLabel Alpaca Chain\ subGroups view=chain species=s075 clade=c02\ track chainVicPac2\ type chain vicPac2\ wgEncodeHaibRnaSeqA549Etoh02RawRep3 A549 ETOH 3 bigWig 0.115095 1155.819946 A549 ETOH 1 hr 0.02% RNA-seq Raw Signal Rep 3 from ENCODE/HAIB 2 25 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 ETOH 1 hr 0.02% RNA-seq Raw Signal Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel A549 ETOH 3\ subGroups view=RawSignal cellType=t2A549 treatment=ETOH02 rep=rep3\ track wgEncodeHaibRnaSeqA549Etoh02RawRep3\ type bigWig 0.115095 1155.819946\ encTfChipPkENCFF530ZTE A549 MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in A549 from ENCODE 3 (ENCFF530ZTE) 1 25 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MAFK in A549 from ENCODE 3 (ENCFF530ZTE)\ parent encTfChipPk off\ shortLabel A549 MAFK\ subGroups cellType=A549 factor=MAFK\ track encTfChipPkENCFF530ZTE\ wgEncodeOpenChromDnaseA549Pk A549 Pk narrowPeak A549 DNaseI HS Peaks from ENCODE/Duke 3 25 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel A549 Pk\ subGroups view=Peaks cellType=t2A549 treatment=zNONE\ track wgEncodeOpenChromDnaseA549Pk\ type narrowPeak\ wgEncodeHaibMethylRrbsAg09309UwSitesRep1 AG09309 1 bed 9 + AG09309 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 25 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09309 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel AG09309 1\ subGroups cellType=t3AG09309 obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsAg09309UwSitesRep1\ type bed 9 +\ wgEncodeUwAffyExonArrayAoafSimpleSignalRep2 AoAF 2 broadPeak AoAF Exon array Signal Rep 2 from ENCODE/UW 0 25 0 0 0 127 127 127 0 0 0 expression 1 longLabel AoAF Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel AoAF 2\ subGroups cellType=t3AOAF rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayAoafSimpleSignalRep2\ type broadPeak\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep3LK15_CNhs13683_ctss_fwd AorticSmsToFgf2_01hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep3 (LK15)_CNhs13683_12842-137B7_forward 0 25 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12842-137B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep3%20%28LK15%29.CNhs13683.12842-137B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep3 (LK15)_CNhs13683_12842-137B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12842-137B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_01hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep3LK15_CNhs13683_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12842-137B7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep3LK15_CNhs13683_tpm_fwd AorticSmsToFgf2_01hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep3 (LK15)_CNhs13683_12842-137B7_forward 1 25 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12842-137B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep3%20%28LK15%29.CNhs13683.12842-137B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep3 (LK15)_CNhs13683_12842-137B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12842-137B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_01hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep3LK15_CNhs13683_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12842-137B7\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseCd20ro01778HotspotsRep2 CD20+ Ht 2 broadPeak B cells CD20+ RO01778 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 25 0 0 0 127 127 127 0 0 0 regulation 1 longLabel B cells CD20+ RO01778 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel CD20+ Ht 2\ subGroups view=Hot cellType=t2BCELLSCD20RO01778 rep=rep2 treatment=None\ track wgEncodeUwDnaseCd20ro01778HotspotsRep2\ type broadPeak\ pgNA12892CG CEU NA12892 pgSnp CEU pedigree 1463, NA12892 (Complete Genomics) 0 25 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU pedigree 1463, NA12892 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12892\ subGroups view=C_CG id=BH_12892 type=SNP\ track pgNA12892CG\ wgEncodeAwgDnaseDukeFibropUniPk FibroP DNase narrowPeak FibroP DNaseI HS Uniform Peaks from ENCODE/Analysis 1 25 0 0 0 127 127 127 1 0 0 regulation 1 longLabel FibroP DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel FibroP DNase\ subGroups tier=a30 cellType=FibroP\ track wgEncodeAwgDnaseDukeFibropUniPk\ wgEncodeAwgTfbsHaibGm12878Ets1Pcr1xUniPk GM12878 ETS1 narrowPeak GM12878 TFBS Uniform Peaks of ETS1 from ENCODE/HudsonAlpha/Analysis 1 25 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of ETS1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 ETS1\ subGroups tier=a10 cellType=a10GM12878 factor=ETS1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Ets1Pcr1xUniPk\ wgEncodeBroadHistoneGm12878H4k20me1StdPk GM12878 H4K20m1 broadPeak GM12878 H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 25 153 38 0 204 146 127 1 0 0 regulation 1 color 153,38,0\ longLabel GM12878 H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel GM12878 H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H4k20me1StdPk\ type broadPeak\ wgEncodeHaibGenotypeGm12892RegionsRep2 GM12892 1 bed 9 + GM12892 Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB 0 25 0 0 0 127 127 127 0 0 0 varRep 1 longLabel GM12892 Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel GM12892 1\ subGroups cellType=t3GM12892 obtainedBy=HudsonAlpha treatment=None rep=rep1\ track wgEncodeHaibGenotypeGm12892RegionsRep2\ type bed 9 +\ wgEncodeHaibMethyl450Gm19239SitesRep1 GM19239 bed 9 GM19239 Methylation 450K Bead Array from ENCODE/HAIB 1 25 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM19239 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel GM19239\ subGroups cellType=t3GM19239 obtainedBy=DUKE treatment=zNONE\ track wgEncodeHaibMethyl450Gm19239SitesRep1\ type bed 9\ wgEncodeHaibTfbsGm12878Cebpbsc150V0422111PkRep1 GM78 CEBPB V11 1 broadPeak GM12878 CEBPB v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 25 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 CEBPB v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 CEBPB V11 1\ subGroups view=Peaks factor=CEBPB cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Cebpbsc150V0422111PkRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqGm12878CytosolPapAlnRep1 GM78 cyt pA+ A 1 bam GM12878 cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 25 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel GM78 cyt pA+ A 1\ subGroups view=Alignments cellType=t1GM12878 localization=CYTOSOL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878CytosolPapAlnRep1\ type bam\ wgEncodeSydhTfbsGm12878Gcn5StdPk GM78 GCN5 Std narrowPeak GM12878 GCN5 Standard ChIP-seq Peaks from ENCODE/SYDH 3 25 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 GCN5 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 GCN5 Std\ subGroups view=Peaks factor=GCN5 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Gcn5StdPk\ type narrowPeak\ wgEncodeRikenCageGm12878NucleusPapAlnRep1 GM78 nucl pA+ A 1 bam GM12878 nucleus polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 25 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleus polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel GM78 nucl pA+ A 1\ subGroups view=Alignments cellType=t1GM12878 localization=nucleus rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageGm12878NucleusPapAlnRep1\ type bam\ wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapPlusRawRep2 GM78 nucl TAP + 2 bigWig 1.000000 647158.000000 GM12878 TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 25 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel GM78 nucl TAP + 2\ subGroups view=PlusSignal cellType=t1GM12878 localization=NUCLEUS protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapPlusRawRep2\ type bigWig 1.000000 647158.000000\ wgEncodeCaltechRnaSeqH1hescR2x75Th1014Il200SigRep4V4 H1ES 2x75 Sg 4 bigWig 0.023800 73808.031250 H1-hESC 200 bp paired read RNA-seq Signal Rep 4 from ENCODE/Caltech 2 25 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC 200 bp paired read RNA-seq Signal Rep 4 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel H1ES 2x75 Sg 4\ subGroups view=Signal cellType=t1H1HESC insertLength=il200 readType=a1R2x75 rep=rep4 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR2x75Th1014Il200SigRep4V4\ type bigWig 0.023800 73808.031250\ wgEncodeOpenChromFaireHelas3Ifng4hPk HeLa IFg FAIRE Pk narrowPeak HeLa-S3 IFNg 4hr FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 25 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 IFNg 4hr FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel HeLa IFg FAIRE Pk\ subGroups view=Peaks cellType=t2HELAS3 treatment=IFNg4h\ track wgEncodeOpenChromFaireHelas3Ifng4hPk\ type narrowPeak\ wgEncodeUwRepliSeqHelas3S4PctSignalRep1 HeLa-S3 S4 1 bigWig 1.000000 100.000000 HeLa-S3 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 25 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HeLa-S3 S4 1\ subGroups view=v1PctSignal cellType=t2HELAS3 phase=p5S4 rep=rep1\ track wgEncodeUwRepliSeqHelas3S4PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeUwTfbsHelas3CtcfStdPkRep1 HeLaS3 CTCF Pk 1 narrowPeak HeLa-S3 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 25 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HeLaS3 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t2HELAS3 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHelas3CtcfStdPkRep1\ type narrowPeak\ wgEncodeDukeAffyExonHepg2SimpleSignalRep1V2 HepG2 1 bigBed 6 + HepG2 Exon array Signal Rep 1 from ENCODE/Duke 0 25 189 0 157 222 127 206 1 0 0 expression 1 color 189,0,157\ longLabel HepG2 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HepG2 1\ subGroups cellType=t2HEPG2 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonHepg2SimpleSignalRep1V2\ type bigBed 6 +\ snpArrayIllumina850k Illumina 850k bigBed 4 Illumina 850k EPIC Methylation Array 0 25 0 0 0 127 127 127 0 0 0 varRep 1 bigDataUrl /gbdb/hg19/bbi/illumina/epic850K.bb\ longLabel Illumina 850k EPIC Methylation Array\ parent genotypeArrays\ priority 25\ shortLabel Illumina 850k\ track snpArrayIllumina850k\ type bigBed 4\ wgEncodeOpenChromChipK562CtcfBaseOverlapSignal K562 CTCF OS bigWig 0.000000 3149.000000 K562 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 25 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo\ shortLabel K562 CTCF OS\ subGroups treatment=AANONE view=SIGBO factor=CTCF cellType=t1K562\ track wgEncodeOpenChromChipK562CtcfBaseOverlapSignal\ type bigWig 0.000000 3149.000000\ wgEncodeUwHistoneK562H3k4me3StdRawRep2 K562 H3K4M3 Sg 2 bigWig 1.000000 4241.000000 K562 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 25 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig on\ shortLabel K562 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t1K562 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneK562H3k4me3StdRawRep2\ type bigWig 1.000000 4241.000000\ wgEncodeGisRnaPetK562NucleoplasmTotalClustersRep1 K562 nplm tot 1 bed 6 + K562 nucleoplasm total clone-based RNA PET Clusters Rep 1 from ENCODE/GIS 2 25 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleoplasm total clone-based RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel K562 nplm tot 1\ subGroups view=v1Clusters cellType=aK562 cloned=Based localization=nucleoplasm rnaExtract=total rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562NucleoplasmTotalClustersRep1\ type bed 6 +\ wgEncodeSunyRipSeqK562Pabpc1AlnRep1 K562 PABPC1 1 bam K562 PABPC1 RIP-seq Alignments Rep 1 from ENCODE/SUNY 0 25 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 PABPC1 RIP-seq Alignments Rep 1 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewAlignments off\ shortLabel K562 PABPC1 1\ subGroups view=Alignments factor=PABPC1 cellType=t1K562 rep=rep1\ track wgEncodeSunyRipSeqK562Pabpc1AlnRep1\ type bam\ wgEncodeUwDgfLhcnm2Diff4dSig LHCNM2 DIFF4d Sig bigWig 1.000000 102421.000000 LHCN-M2 DIFF 4 d DNaseI DGF Per-base Signal from ENCODE/UW 2 25 0 0 0 127 127 127 0 0 0 regulation 0 longLabel LHCN-M2 DIFF 4 d DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel LHCNM2 DIFF4d Sig\ subGroups view=Signal cellType=t2LHCNM2 treatment=DIFF4D rep=rep1\ track wgEncodeUwDgfLhcnm2Diff4dSig\ type bigWig 1.000000 102421.000000\ gtexEqtlTissueLiver liver bed 9 + Expression QTL in Liver from GTEx V6 0 25 205 183 158 230 219 206 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 205,183,158\ idInUrlSql select gene from gtexEqtlTissueLiver where name='%s'\ longLabel Expression QTL in Liver from GTEx V6\ parent gtexEqtlTissue on\ shortLabel liver\ track gtexEqtlTissueLiver\ wgEncodeGisChiaPetMcf7Pol2InteractionsRep4 MCF7 Pol2 Int 4 bed 12 MCF-7 Pol2 ChIA-PET Interactions Rep 4 from ENCODE/GIS-Ruan 2 25 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 Pol2 ChIA-PET Interactions Rep 4 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetInteractions off\ shortLabel MCF7 Pol2 Int 4\ subGroups view=Interactions factor=POL2 cellType=t2MCF7 rep=rep4\ track wgEncodeGisChiaPetMcf7Pol2InteractionsRep4\ type bed 12\ wgEncodeSydhHistoneNt2d1H3k4me1UcdSig NT2-D1 H3K4me1 bigWig 1.000000 6506.000000 NT2D1 H3K4me1 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 25 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NT2D1 H3K4me1 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal on\ shortLabel NT2-D1 H3K4me1\ subGroups view=Signal factor=H3K04ME1 cellType=cNT2D1 control=UCD treatment=NONE\ track wgEncodeSydhHistoneNt2d1H3k4me1UcdSig\ type bigWig 1.000000 6506.000000\ wgEncodeAffyRnaChipFiltTransfragsProstateCellLongnonpolya Prostate cell pA- broadPeak Prostate whole cell polyA- Microarray Transfrags from ENCODE Affy/CSHL 3 25 0 102 136 127 178 195 0 0 0 expression 1 color 0,102,136\ longLabel Prostate whole cell polyA- Microarray Transfrags from ENCODE Affy/CSHL\ parent wgEncodeAffyRnaChipViewFiltTransfrags off\ shortLabel Prostate cell pA-\ subGroups view=FiltTransfrags cellType=t3PROSTATE localization=aCELL rnaExtract=longNonPolyA\ track wgEncodeAffyRnaChipFiltTransfragsProstateCellLongnonpolya\ type broadPeak\ dhcHumDerDenAncRegMotifHighInfoHighFreq RgMoHiInf HiF bigBed 4 + Modern Human Derived (HighFreq), Denisova Ancestral: High Inf Pos in TFBP 3 25 230 60 0 242 157 127 0 0 0 denisova 1 color 230,60,0\ longLabel Modern Human Derived (HighFreq), Denisova Ancestral: High Inf Pos in TFBP\ parent dhcHumDerDenAncReg\ shortLabel RgMoHiInf HiF\ subGroups view=Reg subset=DA_RegMotifHighInfo freq=HighFreq\ track dhcHumDerDenAncRegMotifHighInfoHighFreq\ burgeRnaSeqGemMapperAlignLiverAllRawSignal RNA-seq Liver Sig bedGraph 4 Burge Lab RNA-seq 32mer Reads from Liver, Raw Signal 2 25 46 0 184 150 127 219 0 0 0 expression 0 longLabel Burge Lab RNA-seq 32mer Reads from Liver, Raw Signal\ parent burgeRnaSeqGemMapperAlignViewRawSignal off\ shortLabel RNA-seq Liver Sig\ subGroups view=RawSignal tissueType=liver\ track burgeRnaSeqGemMapperAlignLiverAllRawSignal\ Agilent_Human_Exon_Clinical_Research_V2_Regions SureSel. Clinical V2 T bigBed Agilent - SureSelect Clinical Research Exome V2 Target 0 25 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S30409818_Regions.bb\ color 120,94,240\ longLabel Agilent - SureSelect Clinical Research Exome V2 Target\ parent exomeProbesets on\ shortLabel SureSel. Clinical V2 T\ track Agilent_Human_Exon_Clinical_Research_V2_Regions\ type bigBed\ netOryLat2 Medaka Net netAlign oryLat2 chainOryLat2 Medaka (Oct. 2005 (NIG/UT MEDAKA1/oryLat2)) Alignment Net 1 26 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Medaka (Oct. 2005 (NIG/UT MEDAKA1/oryLat2)) Alignment Net\ otherDb oryLat2\ parent vertebrateChainNetViewnet off\ shortLabel Medaka Net\ subGroups view=net species=s051 clade=c06\ track netOryLat2\ type netAlign oryLat2 chainOryLat2\ netVicPac2 Alpaca Net netAlign vicPac2 chainVicPac2 Alpaca (Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2)) Alignment Net 1 26 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Alpaca (Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2)) Alignment Net\ otherDb vicPac2\ parent placentalChainNetViewnet off\ shortLabel Alpaca Net\ subGroups view=net species=s075 clade=c02\ track netVicPac2\ type netAlign vicPac2 chainVicPac2\ wgEncodeOpenChromDnaseA549Sig A549 DS bigWig 0.000000 0.892200 A549 DNaseI HS Density Signal from ENCODE/Duke 2 26 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel A549 DS\ subGroups view=SIG cellType=t2A549 treatment=zNONE\ track wgEncodeOpenChromDnaseA549Sig\ type bigWig 0.000000 0.892200\ wgEncodeHaibRnaSeqA549Etoh02AlnRep3 A549 ETOH 3 bam A549 ETOH 1 hr 0.02% RNA-seq Alignments Rep 3 from ENCODE/HAIB 0 26 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 ETOH 1 hr 0.02% RNA-seq Alignments Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel A549 ETOH 3\ subGroups view=Alignments cellType=t2A549 treatment=ETOH02 rep=rep3\ track wgEncodeHaibRnaSeqA549Etoh02AlnRep3\ type bam\ encTfChipPkENCFF502JKO A549 MYC narrowPeak Transcription Factor ChIP-seq Peaks of MYC in A549 from ENCODE 3 (ENCFF502JKO) 1 26 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MYC in A549 from ENCODE 3 (ENCFF502JKO)\ parent encTfChipPk off\ shortLabel A549 MYC\ subGroups cellType=A549 factor=MYC\ track encTfChipPkENCFF502JKO\ wgEncodeHaibMethylRrbsAg09309UwSitesRep2 AG09309 2 bed 9 + AG09309 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 26 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09309 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel AG09309 2\ subGroups cellType=t3AG09309 obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsAg09309UwSitesRep2\ type bed 9 +\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep3LK15_CNhs13683_ctss_rev AorticSmsToFgf2_01hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep3 (LK15)_CNhs13683_12842-137B7_reverse 0 26 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12842-137B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep3%20%28LK15%29.CNhs13683.12842-137B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep3 (LK15)_CNhs13683_12842-137B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12842-137B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_01hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep3LK15_CNhs13683_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12842-137B7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep3LK15_CNhs13683_tpm_rev AorticSmsToFgf2_01hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep3 (LK15)_CNhs13683_12842-137B7_reverse 1 26 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12842-137B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep3%20%28LK15%29.CNhs13683.12842-137B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep3 (LK15)_CNhs13683_12842-137B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12842-137B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_01hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep3LK15_CNhs13683_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12842-137B7\ urlLabel FANTOM5 Details:\ wgEncodeUwAffyExonArrayBe2cSimpleSignalRep1 BE2_C 1 broadPeak BE2_C Exon array Signal Rep 1 from ENCODE/UW 0 26 0 0 0 127 127 127 0 0 0 expression 1 longLabel BE2_C Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel BE2_C 1\ subGroups cellType=t3BE2C rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayBe2cSimpleSignalRep1\ type broadPeak\ wgEncodeUwDnaseCd20ro01778PkRep2 CD20+ Pk 2 narrowPeak B cells CD20+ RO01778 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 26 0 0 0 127 127 127 0 0 0 regulation 1 longLabel B cells CD20+ RO01778 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel CD20+ Pk 2\ subGroups view=Peaks cellType=t2BCELLSCD20RO01778 rep=rep2 treatment=None\ track wgEncodeUwDnaseCd20ro01778PkRep2\ type narrowPeak\ pgNA12892indel CEU NA12892 indel pgSnp CEU NA12892 indel (Complete Genomics) 0 26 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12892 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12892 indel\ subGroups view=C_CG id=BH_12892 type=Indel\ track pgNA12892indel\ snpArrayCytoSnp850k CytoSNP 850k bigBed 6 + Illumina 850k CytoSNP Array 3 26 0 0 0 127 127 127 0 0 0

Affymetrix Arrays

\ \

Affymetrix Genome-Wide Human SNP Array 6.0 and SV

\ The SNP Array 6.0 includes more than 906,600 single nucleotide polymorphisms (SNPs) \ and more than 946,000 probes for the detection of copy number variation. \ The SNPs include the 482,000 SNPs from the 5.0 Array (unbiased selection).\ In addition, 424,000 new SNPs were chosen in the following areas:\
    \
  • Tag SNPs
    • \
  • SNPs from chromosomes X and Y
    • \
  • Mitochondrial SNPs
    • \
  • New SNPs added to dbSNP
    • \
  • SNPs in recombination hotspots
    • \
\

\ The structural variation copy number (SV) probes include 202,000 probes \ targeting 5,677 known CNV regions\ from the Toronto Database of Genomic Variants. The additional 744,000 probes \ are evenly spaced throughout the genome.\

\ \

Affymetrix Genome-Wide Human SNP Array 5.0

\ The SNP Array 5.0 is a single microarray featuring all single nucleotide \ polymorphisms (SNPs) from the original two-chip Mapping 500K Array Set, as \ well as 420,000 additional non-polymorphic probes that can measure other \ genetic differences, such as copy number variation.\ \

Affymetrix 500K (250K Nsp and 250K Sty)

\ This annotation displays the SNPs available for genotyping with the \ GeneChip Human Mapping 500K Array Set from Affymetrix. It is comprised of\ two arrays: Nsp and Sty, which contain approximately 262,000 and 238,000 SNPs,\ respectively.\ \

Affymetrix CytoScan HD

\ The CytoScan High-Density (HD) Array provides whole-genome coverage with \ enriched coverage of all constitutional and cancer-related genes on a \ single array. The complete CytoScan array includes:\ \
\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Genome buildhg19
Total number of copy-number markers2,696,550
Total number of non-polymorphic markers1,953,246
Number of SNP markers743,304
SNP markers with >99% genotype accuracy749,157
Autosomal markers2,491,915
Pseudoautosomal markers4,624
Intragenic markers1,410,535
Intergenic markers1,286,015
\
\ \

\ Probes are colored \ green for CNV probesets and\ purple for SNP probesets. \ Some SNP probesets are also considered informative for CNV detection.\

\ \

Agilent Arrays

\

\ Non-SNP subtracks are colored in alternating shades of\ green and\ orange\ to highlight track boundaries. SNP subtracks\ are colored blue with SNP probes colored\ dark blue and CGH probes\ colored\ light blue.\

\ \

\ The track consists of the following subtracks:\

\ The arrays listed in this track are probes from the\ Agilent Catalog Oligonucleotide Microarrays. The following table summarizes the different Agilent arrays:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
DescriptionAMADIDSamples per SlideBiological FeaturesMedian Probe SpacingGene-biasedSNPs
SurePrint G3 Human CGH Microarray 1x1M0215291969,0332.1 kbYes0
SurePrint G3 Human High-Resolution Microarray 1x1M0236421989,2142.6 kbNo (evenly tiled)0
SurePrint G3 Human CGH+SNP Microarray 2x400K0280812411,4347 kbYes65,000
SurePrint G3 Human CGH Microarray 2x400K0218502415,9145.3 kbYes0
SurePrint G3 Human Cancer CGH+SNP Microarray 4x180K0305874172,59525 kbYes (cancer genes)65,000
SurePrint G3 Human CGH+SNP Microarray 4x180K0298304172,59525 kbNo (ISCA regions)65,000
SurePrint G3 Human CGH Microarray 4x180K0220604174,67513 kbYes0
SurePrint G3 Human CGH Microarray 8x60K021924859,17541 kbYes0
SurePrint HD Human CGH Microarray 1x244K0146931238,3318.9 kbYes0
SurePrint HD Human CGH Microarray 2x105K0146982100,03422 kbYes0
SurePrint HD Human CGH Microarray 4x44K014950443,14343 kbYes0
GenetiSure Cyto CGH+SNP 4x180K085591
GenetiSure Cyto CGH 4x180K085589
GenetiSure Cyto CGH 8x60k085590
\ \

Illumina Arrays

\ \

Illumina HumanHap650Y

\ This annotation displays the SNPs available for genotyping with Illumina's\ HumanHap650Y Genotyping BeadChip. The HumanHap650Y contains over 650,000 markers,\ extending the HumanHap550 by adding 100,000 additional Yoruba-specific tag\ SNPs. On average, there is 1 SNP every 5.3 kb, 6.2 kb and 5.4 kb across\ the genome in the CEU, CHB+JPT and YRI populations, respectively.\ The HumanHap650Y was derived from release 21 of the \ \ International HapMap Project.\ \

Illumina HumanHap550

\ This annotation displays the SNPs available for genotyping with Illumina's\ HumanHap550 Genotyping BeadChip. The HumanHap550 contains over 550,000 markers,\ the majority of which are tag SNPs \ derived from release 20 of the \ \ International HapMap Project. In addition,\ approximately 7800 non-synonymous SNPs, a higher density of tag SNPs in\ the MHC region, over 150 mitochondrial SNPs and over 4000\ SNPs from regions with copy number polymorphism were included. \ In the CEU population, an r-squared threshold of 0.8 was used\ for common SNPs in genes, within 10 kb of genes or in evolutionarily\ conserved regions. For all other regions, an r-squared threshold of 0.7 was used.\ On average, there is 1 SNP every 5.5 kb, 6.5 kb and 6.2 kb across the genome in \ the CEU, CHB+JPT and YRI populations, respectively.\ \

Illumina HumanHap300

\ This annotation displays the SNPs available for genotyping with Illumina's\ HumanHap300 Genotyping BeadChip. The HumanHap300 contains over 317,000 tagSNP markers\ derived from Phase I of the \ \ International HapMap Project. In addition,\ approximately 7300 non-synonymous SNPs and a higher density of tag SNPs in\ the MHC region were included. On average, there is 1 SNP every 9 kb across\ the genome and median spacing is 5 kb.\ \

Illumina Human1M-Duo

\ This annotation displays the SNPs available for genotyping with Illumina's\ Human1M-Duo Genotyping BeadChip. The Human1M-Duo contains more than 1,100,000 tagSNP markers\ and a set of ~60,000 additional CNV-targeted markers. \ The median spacing is 1.5kb (mean - 2.4 kb).\ \

Illumina HumanOmni1-Quad v1

\ The HumanOmni1-Quad BeadChip consists of 1,140,419 markers in a 4-sample\ format. The whole-genome content provides high\ genomic coverage rates of 93%, 92%, and 76% at r2 > 0.8 for the CEU,\ CHB+JPT, and YRI populations, respectively. High density markers with a\ median spacing of 1.2 kb ensure the highest level of resolution for CNV\ and breakpoint identification.\ \ The content has been derived from the 1,000 Genomes Project,\ all three HapMap phases, and recently published studies, including \ new coding variants identified by the 1000 Genomes Project and\ markers chosen in high-value regions of the genome: ABO blood\ typing SNPs, cSNPs, disease-associated SNPs, eSNPs, SNPs in mRNA splice\ sites, ADME genes, AIMs, HLA complexes, indels, introns, MHC regions,\ miRNA binding sites, mitochondrial DNA, PAR, promoter regions, and\ Y-chromosome.\ \

Illumina Human660W-Quad v1

\ The Human660W-Quad BeadChip consists of 657,366 markers in a 4-sample\ format. The Human660W-Quad BeadChip provides 87%, 85%, and 56% coverage\ of CEU, CHB+JPT, and YRI populations at r2 > 0.8. For \ CNV and cytogenetic analysis, the dense backbone content is combined\ with an additional ~100,000 markers that target observed common CNVs.\ \

HumanCytoSNP-12 v2.1

\ \ The 301,232 markers on the HumanCytoSNP-12 represents a complete 12-sample panel of \ genome-wide SNPs for a uniform backbone and additional markers targeting all regions of \ known cytogenetic importance. Backbone markers provide genome-wide marker spacing of 10kb. \ This is supplemented with dense coverage (at 6 kb spacing average) of ~250 genomic regions \ commonly studied in cytogenetics labs and targeted coverage in ~400 additional genes, \ subtelomeric regions, pericentromeric regions, and sex chromosomes. \ An efficiency-optimized tagging strategy provides a panel for GWAS \ (70% coverage in CEU at r2 > 0.8) in the highest throughput and most cost-effective \ whole-genome DNA Analysis BeadChip.\ \

Illumina Global Diversity Array

\

\ The\ Global Diversity Array-8 v1.0 BeadChip includes coverage of the ACMG 59-gene\ clinical research variants and multi-ethnic, genome-wide content. The GDA is the commercial version\ of the array chosen by the All of Us Research\ Program and is designed to capture a wider range of the world's populationsthan traditional\ microarrays.

\ \

Illumina 450k and 850k Methylation Arrays

\

\ With the Infinium MethylationEPIC BeadChip Kit, researchers can interrogate over 850,000\ methylation sites quantitatively across the genome at single-nucleotide resolution. Multiple\ samples, including FFPE, can be analyzed in parallel to deliver high-throughput power while\ minimizing the cost per sample. These tracks show positions being measured on the Illumina 450k and\ 850k (EPIC) microarray tracks. More information about the arrays can be found on the\ Infinium MethylationEPIC Kit website.\ \

Illumina CytoSNP 850K Probe Array

\

\ The Infinium CytoSNP-850K v1.2 BeadChip provides comprehensive coverage of\ cytogenetically relevant genes on a proven platform, helping researchers find valuable information\ that may be missed by other technologies. It contains approximately 850,000 empirically selected\ single nucleotide polymorphisms (SNPs) spanning the entire genome with enriched coverage for 3,262\ genes of known cytogenetics relevance in both constitutional and cancer applications. Items in this\ track are colored according to their strand orientation. Blue indicates\ alignment to the negative strand, and red indicates alignment to the\ positive strand.\

\ \ \

Methods

\

\ Position, strand, and polymorphism data were obtained from Affymetrix and \ supplemented with links to corresponding dbSNP rsIDs based on a positional\ lookup into \ \ dbSNP. The Affy 6.0 Array is based on dbSNP build 127; the Affy 5.0 Array \ is based on dbSNP build 126. The Affy 500K Array is based on dbSNP build 125 \ and was translated from hg17 by UCSC using rsID lookup. \ In fewer than 2% of the cases, a dbSNP rsID was\ not present in dbSNP at the Affymetrix array position. \ Reference allele information was retrieved from the UCSC database based on dbSNP position\ and strand data. \

\

\ Illumina data were supplied as rsIDs and position based on dbSNP build 126. \ Strand, polymorphism and reference allele information was retrieved from the UCSC database \ based on rsID and position.\ The Illumina arrays are comprised of probes for 4 of the possible single-base substitutions:\ A/C, A/G, C/T and G/T. A/T and C/G probes will be available in future arrays.\

\

\ For Illumina Human1M-Duo, the position, strand, polymorphism and reference allele information was \ retrieved from the snp129 table of UCSC database if the marker ID can be found in dbSNP 129, \ otherwise the information is retrieved from the data provided by Illumina.\

\

\ For Illumina HumanOmni1-Quad, Human660W-Quad, and HumanCytoSNP-12, \ the position, strand, polymorphism and reference allele information was \ retrieved from the snp130 table of UCSC database if the marker ID can be found in dbSNP 130, \ otherwise the information is retrieved from the data provided by Illumina.\

\

\ Agilent's oligonucleotide CGH (Comparative Genomic Hybridization) platform enables the \ study of genome-wide DNA copy number changes at a high resolution. The CGH probes on Agilent \ aCGH microarrays are 60-mer oligonucleotides synthesized in situ using Agilent's inkjet \ SurePrint technology. The probes represented on the Agilent CGH microarrays have been \ selected using algorithms developed specifically for the CGH application, assuring optimal \ performance of these probes in detecting DNA copy number changes. \

\

\ The Agilent SurePrint G3 CGH+SNP microarrays are designed for high quality human DNA \ copy-number profiling combined with the simultaneous detection of copy-neutral \ aberrations, such as lack or loss of heterozygosity (LOH) and uniparental disomy (UPD). \ Identification of LOH/UPD is enabled by the presence of a set of SNP probes on the CGH+SNP \ microarrays resulting in ~5-10 Mb resolution for copy neutral LOH/UPD detection across the \ entire genome.\

\

\ The Agilent catalog CGH and CGH+SNP microarrays are printed on 1 in. x 3 in. glass slides and are \ available in several formats. The human catalog SurePrint G3 microarrays formats are the 1x1M \ (gene-biased or evenly tiled), 2x400K (CGH-only or CGH+SNP), 4x180K (CGH-only or CGH+SNP), \ and 8x60K. The legacy human catalog SurePrint HD microarrays are the 1x244K, 2x105K, and \ 4x44K. \

\

\ Non-SNP subtracks are colored in alternating shades of \ green and orange to highlight track boundaries. SNP subtracks \ are colored blue with SNP probes colored dark blue and \ CGH probes colored light blue. The track consists of the \ following subtracks:\

\

\ The Illumina 450k track was created using a custom track by Brooke Rhead (\ brhead@gmail.\ com) and then converted into a bigBed.\

\

\ The Illumina 850k (EPIC) track was created using a few columns from the\ Infinium MethylationEPIC v1.0 B5 Manifest File (CSV Format)\ and was then converted into a bigBed.

\

\ The Illumina CytoSNP-850K track was created by downloading the\ CytoSNP-850K v1.2 Manifest File (CSV Format) file and then converted into a\ bigBed file using the hg19 coordinates.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API\ or downloaded from our \ Downloads site. Please refer to our\ \ mailing list archives for questions, or our\ \ Data Access FAQ for more information.\

\ \

References

\

\ More information on Agilent Oligonucleotide Microarrays can be found on \ Agilent's website.\

\

\ Barrett MT, Scheffer A, Ben-Dor A, Sampas N, Lipson D, Kincaid R, Tsang P, Curry B, Baird K, Meltzer\ PS et al.\ \ Comparative genomic hybridization using oligonucleotide microarrays and total genomic DNA.\ Proc Natl Acad Sci U S A. 2004 Dec 21;101(51):17765-70.\ PMID: 15591353; PMC: PMC535426\

\ \

\ More information on the Affymetrix arrays is available at these sites:\

\ \ More information on the Illumina arrays is available at these sites:\ \

\ \

Credits

\

\ Thanks to Shane Giles, Peter Webb, and Anniek De Witte from Agilent\ Technologies, Venu Valmeekam from Affymetrix, and Luana Galver and\ Jennifer L. Stone from Illumina for\ providing these data.\

\ varRep 1 bigDataUrl /gbdb/hg19/bbi/cytoSnp/cytoSnp850k.bb\ colorByStrand 255,0,0 0,0,255\ html genotypeArrays\ longLabel Illumina 850k CytoSNP Array\ parent genotypeArrays on\ priority 26\ shortLabel CytoSNP 850k\ track snpArrayCytoSnp850k\ type bigBed 6 +\ urls rsID="https://www.ncbi.nlm.nih.gov/snp/?term=$$"\ visibility pack\ wgEncodeAwgDnaseDukeFibroblUniPk Fibrobl DNase narrowPeak Fibrobl DNaseI HS Uniform Peaks from ENCODE/Analysis 1 26 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Fibrobl DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Fibrobl DNase\ subGroups tier=a30 cellType=Fibrobl\ track wgEncodeAwgDnaseDukeFibroblUniPk\ wgEncodeAwgTfbsBroadGm12878Ezh239875UniPk GM12878 EZH2 narrowPeak GM12878 TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis 1 26 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 EZH2\ subGroups tier=a10 cellType=a10GM12878 factor=EZH2 lab=Broad\ track wgEncodeAwgTfbsBroadGm12878Ezh239875UniPk\ wgEncodeBroadHistoneGm12878H4k20me1StdSig GM12878 H4K20m1 bigWig 0.040000 8058.640137 GM12878 H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 26 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel GM12878 H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878H4k20me1StdSig\ type bigWig 0.040000 8058.640137\ wgEncodeHaibGenotypeGm19239RegionsRep1 GM19239 1 bed 9 + GM19239 Copy number variants Replicate 1 from ENCODE/HAIB 0 26 0 0 0 127 127 127 0 0 0 varRep 1 longLabel GM19239 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel GM19239 1\ subGroups cellType=t3GM19239 obtainedBy=Duke treatment=None rep=rep1\ track wgEncodeHaibGenotypeGm19239RegionsRep1\ type bed 9 +\ wgEncodeHaibTfbsGm12878Cebpbsc150V0422111RawRep1 GM78 CEBPB V11 1 bigWig 1.000000 4695.000000 GM12878 CEBPB v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 26 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 CEBPB v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 CEBPB V11 1\ subGroups view=RawSignal factor=CEBPB cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Cebpbsc150V0422111RawRep1\ type bigWig 1.000000 4695.000000\ wgEncodeCshlLongRnaSeqGm12878CytosolPapAlnRep2 GM78 cyt pA+ A 2 bam GM12878 cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 26 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel GM78 cyt pA+ A 2\ subGroups view=Alignments cellType=t1GM12878 localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878CytosolPapAlnRep2\ type bam\ wgEncodeSydhTfbsGm12878Gcn5StdSig GM78 GCN5 Std bigWig 1.000000 81561.000000 GM12878 GCN5 Standard ChIP-seq Signal from ENCODE/SYDH 2 26 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 GCN5 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 GCN5 Std\ subGroups view=Signal factor=GCN5 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Gcn5StdSig\ type bigWig 1.000000 81561.000000\ wgEncodeRikenCageGm12878NucleusPapAlnRep2 GM78 nucl pA+ A 2 bam GM12878 nucleus polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 26 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleus polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel GM78 nucl pA+ A 2\ subGroups view=Alignments cellType=t1GM12878 localization=nucleus rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageGm12878NucleusPapAlnRep2\ type bam\ wgEncodeCaltechRnaSeqH1hescR2x75Il200SplicesRep1V2 H1ES 2x75 Sp 1 bam H1-hESC 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 26 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel H1ES 2x75 Sp 1\ subGroups view=Splices cellType=t1H1HESC insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR2x75Il200SplicesRep1V2\ type bam\ wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapContigs H1ES cell TAP C bed 6 H1-hESC TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 26 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs on\ shortLabel H1ES cell TAP C\ subGroups view=Contigs cellType=t1H1HESC localization=CELL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapContigs\ type bed 6\ wgEncodeHaibMethyl450HaeSitesRep1 HAEpiC bed 9 HAEpiC Methylation 450K Bead Array from ENCODE/HAIB 1 26 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAEpiC Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel HAEpiC\ subGroups cellType=t3HAEPIC obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450HaeSitesRep1\ type bed 9\ wgEncodeOpenChromFaireHelas3Ifng4hSig HeLa IFg FAIRE DS bigWig 0.000000 0.697800 HeLa-S3 IFNg 4hr FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 26 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 IFNg 4hr FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel HeLa IFg FAIRE DS\ subGroups view=SIG cellType=t2HELAS3 treatment=IFNg4h\ track wgEncodeOpenChromFaireHelas3Ifng4hSig\ type bigWig 0.000000 0.697800\ wgEncodeUwRepliSeqHelas3G2PctSignalRep1 HeLa-S3 G2 1 bigWig 1.000000 100.000000 HeLa-S3 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 26 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HeLa-S3 G2 1\ subGroups view=v1PctSignal cellType=t2HELAS3 phase=p6G2 rep=rep1\ track wgEncodeUwRepliSeqHelas3G2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeUwTfbsHelas3CtcfStdRawRep1 HeLaS3 CTCF Sg 1 bigWig 1.000000 4129.000000 HeLa-S3 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 26 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HeLaS3 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t2HELAS3 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHelas3CtcfStdRawRep1\ type bigWig 1.000000 4129.000000\ wgEncodeDukeAffyExonHepg2SimpleSignalRep2V2 HepG2 2 bigBed 6 + HepG2 Exon array Signal Rep 2 from ENCODE/Duke 0 26 189 0 157 222 127 206 1 0 0 expression 1 color 189,0,157\ longLabel HepG2 Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HepG2 2\ subGroups cellType=t2HEPG2 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonHepg2SimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeUwHistoneK562H3k27me3StdHotspotsRep1 K562 H3K27M3 Ht 1 broadPeak K562 H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 26 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot on\ shortLabel K562 H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t1K562 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneK562H3k27me3StdHotspotsRep1\ type broadPeak\ wgEncodeGisRnaPetK562NucleoplasmTotalMinusRawSigRep1 K562 nplm tot - 1 bigWig 1.000000 5294.000000 K562 nucleoplasm total clone-based RNA PET Minus signal Rep 1 from ENCODE/GIS 2 26 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleoplasm total clone-based RNA PET Minus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel K562 nplm tot - 1\ subGroups view=v2MinusRawSignal cellType=aK562 cloned=Based localization=nucleoplasm rnaExtract=total rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562NucleoplasmTotalMinusRawSigRep1\ type bigWig 1.000000 5294.000000\ wgEncodeSunyRipSeqK562Pabpc1AlnRep2 K562 PABPC1 2 bam K562 PABPC1 RIP-seq Alignments Rep 2 from ENCODE/SUNY 0 26 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 PABPC1 RIP-seq Alignments Rep 2 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewAlignments off\ shortLabel K562 PABPC1 2\ subGroups view=Alignments factor=PABPC1 cellType=t1K562 rep=rep2\ track wgEncodeSunyRipSeqK562Pabpc1AlnRep2\ type bam\ wgEncodeOpenChromChipK562Pol2Pk K562 Pol2 Pk narrowPeak K562 Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 26 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks\ shortLabel K562 Pol2 Pk\ subGroups treatment=AANONE view=Peaks factor=POL2 cellType=t1K562\ track wgEncodeOpenChromChipK562Pol2Pk\ type narrowPeak\ wgEncodeUwDgfLhcnm2Sig LHCNM2 Sig bigWig 1.000000 65022.000000 LHCN-M2 DNaseI DGF Per-base Signal from ENCODE/UW 2 26 0 0 0 127 127 127 0 0 0 regulation 0 longLabel LHCN-M2 DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel LHCNM2 Sig\ subGroups view=Signal cellType=t2LHCNM2 treatment=aNONE rep=rep1\ track wgEncodeUwDgfLhcnm2Sig\ type bigWig 1.000000 65022.000000\ gtexEqtlTissueLung lung bed 9 + Expression QTL in Lung from GTEx V6 0 26 154 205 50 204 230 152 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 154,205,50\ idInUrlSql select gene from gtexEqtlTissueLung where name='%s'\ longLabel Expression QTL in Lung from GTEx V6\ parent gtexEqtlTissue on\ shortLabel lung\ track gtexEqtlTissueLung\ wgEncodeGisChiaPetMcf7Pol2SigRep4 MCF7 Pol2 Sig 4 bigWig 1.000000 5065.000000 MCF-7 Pol2 ChIA-PET Signal Rep 4 from ENCODE/GIS-Ruan 2 26 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Pol2 ChIA-PET Signal Rep 4 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetSignal off\ shortLabel MCF7 Pol2 Sig 4\ subGroups view=Signal factor=POL2 cellType=t2MCF7 rep=rep4\ track wgEncodeGisChiaPetMcf7Pol2SigRep4\ type bigWig 1.000000 5065.000000\ wgEncodeSydhHistoneNt2d1H3k4me3bUcdPk NT2-D1 H3K4me3 narrowPeak NT2D1 H3K4me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 26 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2D1 H3K4me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks on\ shortLabel NT2-D1 H3K4me3\ subGroups view=Peaks factor=H3K04ME3B cellType=cNT2D1 control=UCD treatment=NONE\ track wgEncodeSydhHistoneNt2d1H3k4me3bUcdPk\ type narrowPeak\ wgEncodeAffyRnaChipFiltTransfragsProstateCellLongpolya Prostate cell pA+ broadPeak Prostate whole cell polyA+ Microarray Transfrags from ENCODE Affy/CSHL 3 26 0 102 136 127 178 195 0 0 0 expression 1 color 0,102,136\ longLabel Prostate whole cell polyA+ Microarray Transfrags from ENCODE Affy/CSHL\ parent wgEncodeAffyRnaChipViewFiltTransfrags off\ shortLabel Prostate cell pA+\ subGroups view=FiltTransfrags cellType=t3PROSTATE localization=aCELL rnaExtract=longPolyA\ track wgEncodeAffyRnaChipFiltTransfragsProstateCellLongpolya\ type broadPeak\ dhcHumDerDenAncRegMotifFixed RegMotif Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: Regulatory Motif 3 26 230 100 0 242 177 127 0 0 0 denisova 1 color 230,100,0\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: Regulatory Motif\ parent dhcHumDerDenAncReg\ shortLabel RegMotif Fxd\ subGroups view=Reg subset=DB_RegMotif freq=Fixed\ track dhcHumDerDenAncRegMotifFixed\ burgeRnaSeqGemMapperAlignLymphNodeAllRawSignal RNA-seq Lymph Node Sig bedGraph 4 Burge Lab RNA-seq 32mer Reads from Lymph Node, Raw Signal 2 26 46 0 184 150 127 219 0 0 0 expression 0 longLabel Burge Lab RNA-seq 32mer Reads from Lymph Node, Raw Signal\ parent burgeRnaSeqGemMapperAlignViewRawSignal on\ shortLabel RNA-seq Lymph Node Sig\ subGroups view=RawSignal tissueType=lymphNode\ track burgeRnaSeqGemMapperAlignLymphNodeAllRawSignal\ Agilent_Human_Exon_Focused_Covered SureSel. Focused P bigBed Agilent - SureSelect Focused Exome Covered by Probes 0 26 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S07084713_Covered.bb\ color 120,94,240\ longLabel Agilent - SureSelect Focused Exome Covered by Probes\ parent exomeProbesets off\ shortLabel SureSel. Focused P\ track Agilent_Human_Exon_Focused_Covered\ type bigBed\ chainFr2 Fugu Chain chain fr2 Fugu (Oct. 2004 (JGI 4.0/fr2)) Chained Alignments 3 27 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Fugu (Oct. 2004 (JGI 4.0/fr2)) Chained Alignments\ otherDb fr2\ parent vertebrateChainNetViewchain off\ shortLabel Fugu Chain\ subGroups view=chain species=s061 clade=c06\ track chainFr2\ type chain fr2\ chainEriEur2 Hedgehog Chain chain eriEur2 Hedgehog (May 2012 (EriEur2.0/eriEur2)) Chained Alignments 3 27 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Hedgehog (May 2012 (EriEur2.0/eriEur2)) Chained Alignments\ otherDb eriEur2\ parent placentalChainNetViewchain off\ shortLabel Hedgehog Chain\ subGroups view=chain species=s090 clade=c04\ track chainEriEur2\ type chain eriEur2\ wgEncodeHaibRnaSeqA549Etoh02RawRep4 A549 ETOH 4 bigWig 0.120691 1476.140015 A549 ETOH 1 hr 0.02% RNA-seq Raw Signal Rep 4 from ENCODE/HAIB 2 27 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 ETOH 1 hr 0.02% RNA-seq Raw Signal Rep 4 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel A549 ETOH 4\ subGroups view=RawSignal cellType=t2A549 treatment=ETOH02 rep=rep4\ track wgEncodeHaibRnaSeqA549Etoh02RawRep4\ type bigWig 0.120691 1476.140015\ encTfChipPkENCFF654YPN A549 NFE2L2 narrowPeak Transcription Factor ChIP-seq Peaks of NFE2L2 in A549 from ENCODE 3 (ENCFF654YPN) 1 27 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NFE2L2 in A549 from ENCODE 3 (ENCFF654YPN)\ parent encTfChipPk off\ shortLabel A549 NFE2L2\ subGroups cellType=A549 factor=NFE2L2\ track encTfChipPkENCFF654YPN\ wgEncodeOpenChromDnaseA549BaseOverlapSignal A549 OS bigWig 0.000000 204.000000 A549 DNaseI HS Overlap Signal from ENCODE/Duke 2 27 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel A549 OS\ subGroups view=SIGBO cellType=t2A549 treatment=zNONE\ track wgEncodeOpenChromDnaseA549BaseOverlapSignal\ type bigWig 0.000000 204.000000\ wgEncodeHaibMethylRrbsAg09319UwSitesRep1 AG09319 1 bed 9 + AG09319 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 27 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09319 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel AG09319 1\ subGroups cellType=t3AG09319 obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsAg09319UwSitesRep1\ type bed 9 +\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep1LK16_CNhs13344_ctss_fwd AorticSmsToFgf2_02hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep1 (LK16)_CNhs13344_12647-134H1_forward 0 27 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12647-134H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep1%20%28LK16%29.CNhs13344.12647-134H1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep1 (LK16)_CNhs13344_12647-134H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12647-134H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_02hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep1LK16_CNhs13344_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12647-134H1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep1LK16_CNhs13344_tpm_fwd AorticSmsToFgf2_02hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep1 (LK16)_CNhs13344_12647-134H1_forward 1 27 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12647-134H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep1%20%28LK16%29.CNhs13344.12647-134H1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep1 (LK16)_CNhs13344_12647-134H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12647-134H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_02hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep1LK16_CNhs13344_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12647-134H1\ urlLabel FANTOM5 Details:\ wgEncodeUwAffyExonArrayBe2cSimpleSignalRep2 BE2_C 2 broadPeak BE2_C Exon array Signal Rep 2 from ENCODE/UW 0 27 0 0 0 127 127 127 0 0 0 expression 1 longLabel BE2_C Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel BE2_C 2\ subGroups cellType=t3BE2C rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayBe2cSimpleSignalRep2\ type broadPeak\ wgEncodeUwDnaseCd20ro01778RawRep2 CD20+ Sg 2 bigWig 1.000000 31470.000000 B cells CD20+ RO01778 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 27 0 0 0 127 127 127 0 0 0 regulation 0 longLabel B cells CD20+ RO01778 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel CD20+ Sg 2\ subGroups view=zRSig cellType=t2BCELLSCD20RO01778 rep=rep2 treatment=None\ track wgEncodeUwDnaseCd20ro01778RawRep2\ type bigWig 1.000000 31470.000000\ wgEncodeAwgDnaseUwGm06990UniPk GM06990 DNase narrowPeak GM06990 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 27 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM06990 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel GM06990 DNase\ subGroups tier=a30 cellType=GM06990\ track wgEncodeAwgDnaseUwGm06990UniPk\ wgEncodeAwgTfbsSydhGm12878CfosUniPk GM12878 FOS narrowPeak GM12878 TFBS Uniform Peaks of c-Fos from ENCODE/Yale/Analysis 1 27 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of c-Fos from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 FOS\ subGroups tier=a10 cellType=a10GM12878 factor=FOS lab=Yale\ track wgEncodeAwgTfbsSydhGm12878CfosUniPk\ wgEncodeBroadHistoneGm12878ControlStdSig GM12878 Input bigWig 0.040000 10034.400391 GM12878 Input Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 27 153 38 0 204 146 127 1 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Input Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel GM12878 Input\ subGroups view=Signal factor=zCTRL cellType=t1GM12878 treatment=zNONE\ track wgEncodeBroadHistoneGm12878ControlStdSig\ type bigWig 0.040000 10034.400391\ wgEncodeHaibTfbsGm12878Cebpbsc150V0422111PkRep2 GM78 CEBPB V11 2 broadPeak GM12878 CEBPB v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 27 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 CEBPB v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 CEBPB V11 2\ subGroups view=Peaks factor=CEBPB cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Cebpbsc150V0422111PkRep2\ type broadPeak\ wgEncodeRikenCageGm12878CellPapTssHmm GM78 cell pA+ bed 6 GM12878 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 27 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel GM78 cell pA+\ subGroups view=TssHmm cellType=t1GM12878 localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageGm12878CellPapTssHmm\ type bed 6\ wgEncodeCshlLongRnaSeqGm12878CytosolPapContigs GM78 cyt pA+ C bed 6 + GM12878 cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 27 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel GM78 cyt pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1GM12878 localization=CYTOSOL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqGm12878CytosolPapContigs\ type bed 6 +\ wgEncodeSydhTfbsGm12878Ikzf1iknuclaStdPk GM78 IKZF1 Std narrowPeak GM12878 IKZF1 IKN UCLA Standard ChIP-seq Peaks from ENCODE/SYDH 3 27 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 IKZF1 IKN UCLA Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 IKZF1 Std\ subGroups view=Peaks factor=IKZF1IKNUCLA cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Ikzf1iknuclaStdPk\ type narrowPeak\ wgEncodeCaltechRnaSeqH1hescR2x75Il200SplicesRep2V2 H1ES 2x75 Sp 2 bam H1-hESC 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 27 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel H1ES 2x75 Sp 2\ subGroups view=Splices cellType=t1H1HESC insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR2x75Il200SplicesRep2V2\ type bam\ wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapMinusRawRep1 H1ES cell TAP - 1 bigWig 1.000000 15677126.000000 H1-hESC TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 27 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal on\ shortLabel H1ES cell TAP - 1\ subGroups view=MinusSignal cellType=t1H1HESC localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapMinusRawRep1\ type bigWig 1.000000 15677126.000000\ wgEncodeHaibGenotypeHaeRegionsRep1 HAEpiC 1 bed 9 + HAEpiC Copy number variants Replicate 1 from ENCODE/HAIB 0 27 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HAEpiC Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HAEpiC 1\ subGroups cellType=t3HAEPIC obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeHaeRegionsRep1\ type bed 9 +\ wgEncodeHaibMethyl450HcfSitesRep1 HCF bed 9 HCF Methylation 450K Bead Array from ENCODE/HAIB 1 27 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCF Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel HCF\ subGroups cellType=t3HCF obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450HcfSitesRep1\ type bed 9\ wgEncodeGisChiaPetHct116Pol2InteractionsRep1 HCT116 Pol2 Int 1 bed 12 HCT-116 Pol2 ChIA-PET Interactions Rep 1 from ENCODE/GIS-Ruan 2 27 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HCT-116 Pol2 ChIA-PET Interactions Rep 1 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetInteractions off\ shortLabel HCT116 Pol2 Int 1\ subGroups view=Interactions factor=POL2 cellType=t3HCT116 rep=rep1\ track wgEncodeGisChiaPetHct116Pol2InteractionsRep1\ type bed 12\ wgEncodeOpenChromFaireHelas3Ifng4hBaseOverlapSignal HeLa IFg FAIRE OS bigWig 0.000000 1430.000000 HeLa-S3 IFNg 4hr FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 27 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 IFNg 4hr FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel HeLa IFg FAIRE OS\ subGroups view=SIGBO cellType=t2HELAS3 treatment=IFNg4h\ track wgEncodeOpenChromFaireHelas3Ifng4hBaseOverlapSignal\ type bigWig 0.000000 1430.000000\ wgEncodeUwRepliSeqHelas3PkRep1 HeLa-S3 Pk 1 bed 9 HeLa-S3-Phase Repli-seq Peaks Rep 1 from ENCODE/UW 0 27 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3-Phase Repli-seq Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPeaks off\ shortLabel HeLa-S3 Pk 1\ subGroups view=v2Peaks cellType=t2HELAS3 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqHelas3PkRep1\ type bed 9\ wgEncodeUwTfbsHelas3CtcfStdHotspotsRep2 HeLaS3 CTCF Ht 2 broadPeak HeLa-S3 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 27 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HeLaS3 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t2HELAS3 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHelas3CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeDukeAffyExonHepg2SimpleSignalRep3V2 HepG2 3 bigBed 6 + HepG2 Exon array Signal Rep 3 from ENCODE/Duke 0 27 189 0 157 222 127 206 1 0 0 expression 1 color 189,0,157\ longLabel HepG2 Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HepG2 3\ subGroups cellType=t2HEPG2 treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonHepg2SimpleSignalRep3V2\ type bigBed 6 +\ wgEncodeUwHistoneK562H3k27me3StdPkRep1 K562 H3K27M3 Pk 1 narrowPeak K562 H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 27 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks on\ shortLabel K562 H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t1K562 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneK562H3k27me3StdPkRep1\ type narrowPeak\ wgEncodeGisRnaPetK562NucleoplasmTotalPlusRawSigRep1 K562 nplm tot + 1 bigWig 1.000000 202.000000 K562 nucleoplasm total clone-based RNA PET Plus signal Rep 1 from ENCODE/GIS 2 27 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleoplasm total clone-based RNA PET Plus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel K562 nplm tot + 1\ subGroups view=v2PlusRawSignal cellType=aK562 cloned=Based localization=nucleoplasm rnaExtract=total rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562NucleoplasmTotalPlusRawSigRep1\ type bigWig 1.000000 202.000000\ wgEncodeSunyRipSeqK562Pabpc1Pk K562 PABPC1 Pk broadPeak K562 PABPC1 RIP-seq Analysis from ENCODE/SUNY 2 27 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 PABPC1 RIP-seq Analysis from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewPeaks on\ shortLabel K562 PABPC1 Pk\ subGroups view=Peaks factor=PABPC1 cellType=t1K562 rep=Pooled\ track wgEncodeSunyRipSeqK562Pabpc1Pk\ type broadPeak\ wgEncodeOpenChromChipK562Pol2Sig K562 Pol2 DS bigWig 0.000000 5.497300 K562 Pol2 TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 27 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 Pol2 TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal\ shortLabel K562 Pol2 DS\ subGroups treatment=AANONE view=SIG factor=POL2 cellType=t1K562\ track wgEncodeOpenChromChipK562Pol2Sig\ type bigWig 0.000000 5.497300\ wgEncodeUwDgfLhcnm2Diff4dRaw LHCNM2 DIFF4d Raw bigWig 1.000000 591867.000000 LHCN-M2 DIFF 4 d DNaseI DGF Raw Signal from ENCODE/UW 0 27 0 0 0 127 127 127 0 0 0 regulation 0 longLabel LHCN-M2 DIFF 4 d DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel LHCNM2 DIFF4d Raw\ subGroups view=zRaw cellType=t2LHCNM2 treatment=DIFF4D rep=rep1\ track wgEncodeUwDgfLhcnm2Diff4dRaw\ type bigWig 1.000000 591867.000000\ gtexEqtlTissueMuscleSkeletal muscleSkeletal bed 9 + Expression QTL in Muscle_Skeletal from GTEx V6 0 27 122 103 238 188 179 246 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 122,103,238\ idInUrlSql select gene from gtexEqtlTissueMuscleSkeletal where name='%s'\ longLabel Expression QTL in Muscle_Skeletal from GTEx V6\ parent gtexEqtlTissue on\ shortLabel muscleSkeletal\ track gtexEqtlTissueMuscleSkeletal\ wgEncodeSydhHistoneNt2d1H3k4me3bUcdSig NT2-D1 H3K4me3 bigWig 1.000000 8678.000000 NT2D1 H3K4me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 27 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NT2D1 H3K4me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal on\ shortLabel NT2-D1 H3K4me3\ subGroups view=Signal factor=H3K04ME3B cellType=cNT2D1 control=UCD treatment=NONE\ track wgEncodeSydhHistoneNt2d1H3k4me3bUcdSig\ type bigWig 1.000000 8678.000000\ dhcHumDerDenAncRegMotifFixedDbSnp RegMotif FxS bigBed 4 + Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: Regulatory Motif 3 27 230 100 0 242 177 127 0 0 0 denisova 1 color 230,100,0\ longLabel Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: Regulatory Motif\ parent dhcHumDerDenAncReg\ shortLabel RegMotif FxS\ subGroups view=Reg subset=DB_RegMotif freq=FixedDbSnp\ track dhcHumDerDenAncRegMotifFixedDbSnp\ burgeRnaSeqGemMapperAlignSkelMuscleAllRawSignal RNA-seq Muscle Sig bedGraph 4 Burge Lab RNA-seq 32mer Reads from Skeletal Muscle, Raw Signal 2 27 46 0 184 150 127 219 0 0 0 expression 0 longLabel Burge Lab RNA-seq 32mer Reads from Skeletal Muscle, Raw Signal\ parent burgeRnaSeqGemMapperAlignViewRawSignal off\ shortLabel RNA-seq Muscle Sig\ subGroups view=RawSignal tissueType=skelMuscle\ track burgeRnaSeqGemMapperAlignSkelMuscleAllRawSignal\ Agilent_Human_Exon_Focused_Regions SureSel. Focused T bigBed Agilent - SureSelect Focused Exome Target Regions 0 27 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S07084713_Regions.bb\ color 120,94,240\ longLabel Agilent - SureSelect Focused Exome Target Regions\ parent exomeProbesets off\ shortLabel SureSel. Focused T\ track Agilent_Human_Exon_Focused_Regions\ type bigBed\ pgNA19240CG YRI NA19240 pgSnp YRI NA19240 (Daughter) (Complete Genomics) 0 27 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA19240 (Daughter) (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA19240\ subGroups view=C_CG id=BI_19240 type=SNP\ track pgNA19240CG\ netFr2 Fugu Net netAlign fr2 chainFr2 Fugu (Oct. 2004 (JGI 4.0/fr2)) Alignment Net 1 28 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Fugu (Oct. 2004 (JGI 4.0/fr2)) Alignment Net\ otherDb fr2\ parent vertebrateChainNetViewnet off\ shortLabel Fugu Net\ subGroups view=net species=s061 clade=c06\ track netFr2\ type netAlign fr2 chainFr2\ netEriEur2 Hedgehog Net netAlign eriEur2 chainEriEur2 Hedgehog (May 2012 (EriEur2.0/eriEur2)) Alignment Net 1 28 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Hedgehog (May 2012 (EriEur2.0/eriEur2)) Alignment Net\ otherDb eriEur2\ parent placentalChainNetViewnet off\ shortLabel Hedgehog Net\ subGroups view=net species=s090 clade=c04\ track netEriEur2\ type netAlign eriEur2 chainEriEur2\ wgEncodeHaibRnaSeqA549Etoh02AlnRep4 A549 ETOH 4 bam A549 ETOH 1 hr 0.02% RNA-seq Alignments Rep 4 from ENCODE/HAIB 0 28 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 ETOH 1 hr 0.02% RNA-seq Alignments Rep 4 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel A549 ETOH 4\ subGroups view=Alignments cellType=t2A549 treatment=ETOH02 rep=rep4\ track wgEncodeHaibRnaSeqA549Etoh02AlnRep4\ type bam\ encTfChipPkENCFF080RMP A549 NR3C1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF080RMP) 1 28 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF080RMP)\ parent encTfChipPk off\ shortLabel A549 NR3C1 1\ subGroups cellType=A549 factor=NR3C1\ track encTfChipPkENCFF080RMP\ wgEncodeHaibMethylRrbsAg09319UwSitesRep2 AG09319 2 bed 9 + AG09319 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 28 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09319 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel AG09319 2\ subGroups cellType=t3AG09319 obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsAg09319UwSitesRep2\ type bed 9 +\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep1LK16_CNhs13344_ctss_rev AorticSmsToFgf2_02hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep1 (LK16)_CNhs13344_12647-134H1_reverse 0 28 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12647-134H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep1%20%28LK16%29.CNhs13344.12647-134H1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep1 (LK16)_CNhs13344_12647-134H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12647-134H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_02hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep1LK16_CNhs13344_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12647-134H1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep1LK16_CNhs13344_tpm_rev AorticSmsToFgf2_02hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep1 (LK16)_CNhs13344_12647-134H1_reverse 1 28 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12647-134H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep1%20%28LK16%29.CNhs13344.12647-134H1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep1 (LK16)_CNhs13344_12647-134H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12647-134H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_02hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep1LK16_CNhs13344_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12647-134H1\ urlLabel FANTOM5 Details:\ wgEncodeUwAffyExonArrayBjSimpleSignalRep1 BJ 1 broadPeak BJ Exon array Signal Rep 1 from ENCODE/UW 0 28 0 0 0 127 127 127 0 0 0 expression 1 longLabel BJ Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel BJ 1\ subGroups cellType=t3BJ rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayBjSimpleSignalRep1\ type broadPeak\ wgEncodeOpenChromDnaseCd20ro01794Pk CD20 Pk narrowPeak B-cells CD20+ RO01794 DNaseI HS Peaks from ENCODE/Duke 3 28 0 0 0 127 127 127 1 0 0 regulation 1 longLabel B-cells CD20+ RO01794 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel CD20 Pk\ subGroups view=Peaks cellType=t2BCELLSCD20RO01794 treatment=zNONE\ track wgEncodeOpenChromDnaseCd20ro01794Pk\ type narrowPeak\ wgEncodeAwgDnaseUwGm12864UniPk GM12864 DNase narrowPeak GM12864 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 28 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM12864 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel GM12864 DNase\ subGroups tier=a30 cellType=GM12864\ track wgEncodeAwgDnaseUwGm12864UniPk\ wgEncodeAwgTfbsHaibGm12878Foxm1sc502V0422111UniPk GM12878 FOXM1 narrowPeak GM12878 TFBS Uniform Peaks of FOXM1_(SC-502) from ENCODE/HudsonAlpha/Analysis 1 28 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of FOXM1_(SC-502) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 FOXM1\ subGroups tier=a10 cellType=a10GM12878 factor=FOXM1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Foxm1sc502V0422111UniPk\ wgEncodeHaibTfbsGm12878Cebpbsc150V0422111RawRep2 GM78 CEBPB V11 2 bigWig 1.000000 3331.000000 GM12878 CEBPB v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 28 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 CEBPB v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 CEBPB V11 2\ subGroups view=RawSignal factor=CEBPB cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Cebpbsc150V0422111RawRep2\ type bigWig 1.000000 3331.000000\ wgEncodeRikenCageGm12878CellPapPlusSignalRep1 GM78 cell pA+ + 1 bigWig 1.000000 188531.000000 GM12878 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 28 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel GM78 cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t1GM12878 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageGm12878CellPapPlusSignalRep1\ type bigWig 1.000000 188531.000000\ wgEncodeCshlLongRnaSeqGm12878CytosolPapJunctions GM78 cyt pA+ J bed 6 + GM12878 cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 28 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel GM78 cyt pA+ J\ subGroups view=Junctions cellType=t1GM12878 localization=CYTOSOL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqGm12878CytosolPapJunctions\ type bed 6 +\ wgEncodeSydhTfbsGm12878Ikzf1iknuclaStdSig GM78 IKZF1 Std bigWig 1.000000 16841.000000 GM12878 IKZF1 IKN UCLA Standard ChIP-seq Signal from ENCODE/SYDH 2 28 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 IKZF1 IKN UCLA Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 IKZF1 Std\ subGroups view=Signal factor=IKZF1IKNUCLA cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Ikzf1iknuclaStdSig\ type bigWig 1.000000 16841.000000\ wgEncodeBroadHistoneH1hescChd1a301218aStdPk H1-hESC CHD1 broadPeak H1-hESC CHD1 (A301-218A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 28 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC CHD1 (A301-218A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC CHD1\ subGroups view=Peaks factor=CHD1A301218A cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescChd1a301218aStdPk\ type broadPeak\ wgEncodeCaltechRnaSeqH1hescR2x75Il200SplicesRep3V2 H1ES 2x75 Sp 3 bam H1-hESC 200 bp paired read RNA-seq Splices Rep 3 from ENCODE/Caltech 0 28 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC 200 bp paired read RNA-seq Splices Rep 3 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel H1ES 2x75 Sp 3\ subGroups view=Splices cellType=t1H1HESC insertLength=il200 readType=a1R2x75 rep=rep3 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR2x75Il200SplicesRep3V2\ type bam\ wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapMinusRawRep2 H1ES cell TAP - 2 bigWig 1.000000 13772296.000000 H1-hESC TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 28 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel H1ES cell TAP - 2\ subGroups view=MinusSignal cellType=t1H1HESC localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapMinusRawRep2\ type bigWig 1.000000 13772296.000000\ wgEncodeHaibGenotypeHaeRegionsRep2 HAEpiC 2 bed 9 + HAEpiC Copy number variants Replicate 2 from ENCODE/HAIB 0 28 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HAEpiC Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HAEpiC 2\ subGroups cellType=t3HAEPIC obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeHaeRegionsRep2\ type bed 9 +\ wgEncodeHaibMethyl450HcmSitesRep1 HCM bed 9 HCM Methylation 450K Bead Array from ENCODE/HAIB 1 28 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel HCM\ subGroups cellType=t3HCM obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450HcmSitesRep1\ type bed 9\ wgEncodeGisChiaPetHct116Pol2SigRep1 HCT116 Pol2 Sig 1 bigWig 1.000000 3688.000000 HCT-116 Pol2 ChIA-PET Signal Rep 1 from ENCODE/GIS-Ruan 2 28 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 Pol2 ChIA-PET Signal Rep 1 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetSignal off\ shortLabel HCT116 Pol2 Sig 1\ subGroups view=Signal factor=POL2 cellType=t3HCT116 rep=rep1\ track wgEncodeGisChiaPetHct116Pol2SigRep1\ type bigWig 1.000000 3688.000000\ wgEncodeUwRepliSeqHelas3ValleysRep1 HeLa-S3 Vly 1 bed 9 HeLa-S3-Phase Repli-seq Valleys Rep 1 from ENCODE/UW 0 28 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3-Phase Repli-seq Valleys Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewValleys off\ shortLabel HeLa-S3 Vly 1\ subGroups view=v3Valleys cellType=t2HELAS3 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqHelas3ValleysRep1\ type bed 9\ wgEncodeUwTfbsHelas3CtcfStdPkRep2 HeLaS3 CTCF Pk 2 narrowPeak HeLa-S3 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 28 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HeLaS3 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t2HELAS3 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHelas3CtcfStdPkRep2\ type narrowPeak\ wgEncodeUwDnaseHelas3HotspotsRep1 HeLaS3 Ht 1 broadPeak HeLa-S3 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 28 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HeLaS3 Ht 1\ subGroups view=Hot cellType=t2HELAS3 rep=rep1 treatment=None\ track wgEncodeUwDnaseHelas3HotspotsRep1\ type broadPeak\ wgEncodeOpenChromFaireHepg2Pk HepG2 FAIRE Pk narrowPeak HepG2 FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 28 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel HepG2 FAIRE Pk\ subGroups view=Peaks cellType=t2HEPG2 treatment=AANONE\ track wgEncodeOpenChromFaireHepg2Pk\ type narrowPeak\ wgEncodeDukeAffyExonHuvecSimpleSignalRep1V2 HUVEC 1 bigBed 6 + HUVEC Exon array Signal Rep 1 from ENCODE/Duke 0 28 224 75 0 239 165 127 1 0 0 expression 1 color 224,75,0\ longLabel HUVEC Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HUVEC 1\ subGroups cellType=t2HUVEC treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonHuvecSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeUwHistoneK562H3k27me3StdRawRep1 K562 H3K27M3 Sg 1 bigWig 1.000000 6663.000000 K562 H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 28 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig on\ shortLabel K562 H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t1K562 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneK562H3k27me3StdRawRep1\ type bigWig 1.000000 6663.000000\ wgEncodeGisRnaPetK562NucleoplasmTotalAlnRep1 K562 nplm tot A 1 bam K562 nucleoplasm total clone-based RNA PET Alignments Rep 1 from ENCODE/GIS 0 28 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleoplasm total clone-based RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel K562 nplm tot A 1\ subGroups view=v3Alignments cellType=aK562 cloned=Based localization=nucleoplasm rnaExtract=total rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562NucleoplasmTotalAlnRep1\ type bam\ wgEncodeSunyRipSeqK562Pabpc1SigRep1 K562 PABPC1 1 bigWig 0.000000 53101.386719 K562 PABPC1 RIP-seq Signal Rep 1 from ENCODE/SUNY 2 28 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 PABPC1 RIP-seq Signal Rep 1 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewSignal off\ shortLabel K562 PABPC1 1\ subGroups view=Signal factor=PABPC1 cellType=t1K562 rep=rep1\ track wgEncodeSunyRipSeqK562Pabpc1SigRep1\ type bigWig 0.000000 53101.386719\ wgEncodeOpenChromChipK562Pol2BaseOverlapSignal K562 Pol2 OS bigWig 0.000000 4459.000000 K562 Pol2 TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 28 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 Pol2 TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo\ shortLabel K562 Pol2 OS\ subGroups treatment=AANONE view=SIGBO factor=POL2 cellType=t1K562\ track wgEncodeOpenChromChipK562Pol2BaseOverlapSignal\ type bigWig 0.000000 4459.000000\ wgEncodeUwDgfLhcnm2Raw LHCNM2 Raw bigWig 1.000000 308025.000000 LHCN-M2 DNaseI DGF Raw Signal from ENCODE/UW 0 28 0 0 0 127 127 127 0 0 0 regulation 0 longLabel LHCN-M2 DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel LHCNM2 Raw\ subGroups view=zRaw cellType=t2LHCNM2 treatment=aNONE rep=rep1\ track wgEncodeUwDgfLhcnm2Raw\ type bigWig 1.000000 308025.000000\ gtexEqtlTissueNerveTibial nerveTibial bed 9 + Expression QTL in Nerve_Tibial from GTEx V6 0 28 255 215 0 255 235 127 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 255,215,0\ idInUrlSql select gene from gtexEqtlTissueNerveTibial where name='%s'\ longLabel Expression QTL in Nerve_Tibial from GTEx V6\ parent gtexEqtlTissue on\ shortLabel nerveTibial\ track gtexEqtlTissueNerveTibial\ wgEncodeSydhHistoneNt2d1H3k09me3UcdPk NT2-D1 H3K9me3 narrowPeak NT2D1 H3K9me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 28 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2D1 H3K9me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks off\ shortLabel NT2-D1 H3K9me3\ subGroups view=Peaks factor=H3K09ME3 cellType=cNT2D1 control=UCD treatment=NONE\ track wgEncodeSydhHistoneNt2d1H3k09me3UcdPk\ type narrowPeak\ dhcHumDerDenAncRegMotifHighFreq RegMotif HiF bigBed 4 + Modern Human Derived (HighFreq), Denisova Ancestral: Regulatory Motif 3 28 230 100 0 242 177 127 0 0 0 denisova 1 color 230,100,0\ longLabel Modern Human Derived (HighFreq), Denisova Ancestral: Regulatory Motif\ parent dhcHumDerDenAncReg\ shortLabel RegMotif HiF\ subGroups view=Reg subset=DB_RegMotif freq=HighFreq\ track dhcHumDerDenAncRegMotifHighFreq\ burgeRnaSeqGemMapperAlignTestesAllRawSignal RNA-seq Testes Sig bedGraph 4 Burge Lab RNA-seq 32mer Reads from Testes, Raw Signal 2 28 46 0 184 150 127 219 0 0 0 expression 0 longLabel Burge Lab RNA-seq 32mer Reads from Testes, Raw Signal\ parent burgeRnaSeqGemMapperAlignViewRawSignal off\ shortLabel RNA-seq Testes Sig\ subGroups view=RawSignal tissueType=testes\ track burgeRnaSeqGemMapperAlignTestesAllRawSignal\ Agilent_Human_Exon_V4_Covered SureSel. V4 P bigBed Agilent - SureSelect All Exon V4 Covered by Probes 0 28 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S03723314_Covered.bb\ color 120,94,240\ longLabel Agilent - SureSelect All Exon V4 Covered by Probes\ parent exomeProbesets off\ shortLabel SureSel. V4 P\ track Agilent_Human_Exon_V4_Covered\ type bigBed\ pgNA19240indel YRI NA19240 indel pgSnp YRI NA19240 (Daughter) indel (Complete Genomics) 0 28 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA19240 (Daughter) indel (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA19240 indel\ subGroups view=C_CG id=BI_19240 type=Indel\ track pgNA19240indel\ chainTetNig2 Tetraodon Chain chain tetNig2 Tetraodon (Mar. 2007 (Genoscope 8.0/tetNig2)) Chained Alignments 3 29 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Tetraodon (Mar. 2007 (Genoscope 8.0/tetNig2)) Chained Alignments\ otherDb tetNig2\ parent vertebrateChainNetViewchain off\ shortLabel Tetraodon Chain\ subGroups view=chain species=s062 clade=c06\ track chainTetNig2\ type chain tetNig2\ chainSorAra2 Shrew Chain chain sorAra2 Shrew (Aug. 2008 (Broad/sorAra2)) Chained Alignments 3 29 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Shrew (Aug. 2008 (Broad/sorAra2)) Chained Alignments\ otherDb sorAra2\ parent placentalChainNetViewchain off\ shortLabel Shrew Chain\ subGroups view=chain species=s093 clade=c04\ track chainSorAra2\ type chain sorAra2\ encTfChipPkENCFF913WFD A549 NR3C1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF913WFD) 1 29 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF913WFD)\ parent encTfChipPk off\ shortLabel A549 NR3C1 2\ subGroups cellType=A549 factor=NR3C1\ track encTfChipPkENCFF913WFD\ wgEncodeHaibMethylRrbsAg10803UwSitesRep1 AG10803 1 bed 9 + AG10803 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 29 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel AG10803 1\ subGroups cellType=t3AG10803 obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsAg10803UwSitesRep1\ type bed 9 +\ wgEncodeUwDgfAg10803Hotspots AG10803 Hot broadPeak AG10803 DNaseI DGF Hotspots from ENCODE/UW 0 29 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel AG10803 Hot\ subGroups view=Hotspots cellType=t3AG10803 treatment=aNONE rep=rep1\ track wgEncodeUwDgfAg10803Hotspots\ type broadPeak\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_ctss_fwd AorticSmsToFgf2_02hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_forward 0 29 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep2%20%28LK17%29.CNhs13363.12745-135I9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12745-135I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_02hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_tpm_fwd AorticSmsToFgf2_02hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_forward 1 29 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep2%20%28LK17%29.CNhs13363.12745-135I9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12745-135I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_02hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9\ urlLabel FANTOM5 Details:\ wgEncodeUwAffyExonArrayBjSimpleSignalRep2 BJ 2 broadPeak BJ Exon array Signal Rep 2 from ENCODE/UW 0 29 0 0 0 127 127 127 0 0 0 expression 1 longLabel BJ Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel BJ 2\ subGroups cellType=t3BJ rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayBjSimpleSignalRep2\ type broadPeak\ wgEncodeOpenChromDnaseCd20ro01794Sig CD20 DS bigWig 0.000000 1.765400 B-cells CD20+ RO01794 DNaseI HS Density Signal from ENCODE/Duke 2 29 0 0 0 127 127 127 1 0 0 regulation 0 longLabel B-cells CD20+ RO01794 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel CD20 DS\ subGroups view=SIG cellType=t2BCELLSCD20RO01794 treatment=zNONE\ track wgEncodeOpenChromDnaseCd20ro01794Sig\ type bigWig 0.000000 1.765400\ wgEncodeAwgDnaseUwGm12865UniPk GM12865 DNase narrowPeak GM12865 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 29 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM12865 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel GM12865 DNase\ subGroups tier=a30 cellType=GM12865\ track wgEncodeAwgDnaseUwGm12865UniPk\ wgEncodeAwgTfbsHaibGm12878GabpPcr2xUniPk GM12878 GABPA narrowPeak GM12878 TFBS Uniform Peaks of GABP from ENCODE/HudsonAlpha/Analysis 1 29 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of GABP from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 GABPA\ subGroups tier=a10 cellType=a10GM12878 factor=GABPA lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878GabpPcr2xUniPk\ wgEncodeRikenCageGm12878CellPapPlusSignalRep2 GM78 cell pA+ + 2 bigWig 1.000000 218248.000000 GM12878 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 29 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel GM78 cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t1GM12878 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageGm12878CellPapPlusSignalRep2\ type bigWig 1.000000 218248.000000\ wgEncodeHaibTfbsGm12878Creb1sc240V0422111PkRep1 GM78 CREB1 V11 1 broadPeak GM12878 CREB1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 29 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 CREB1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 CREB1 V11 1\ subGroups view=Peaks factor=CREB1SC240 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Creb1sc240V0422111PkRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqGm12878CytosolPapMinusRawSigRep1 GM78 cyt pA+ - 1 bigWig 1.000000 387464.000000 GM12878 cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 29 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel GM78 cyt pA+ - 1\ subGroups view=MinusSignal cellType=t1GM12878 localization=CYTOSOL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878CytosolPapMinusRawSigRep1\ type bigWig 1.000000 387464.000000\ wgEncodeSydhTfbsGm12878Irf3IggmusPk GM78 IRF3 IgM narrowPeak GM12878 IRF3 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 29 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 IRF3 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 IRF3 IgM\ subGroups view=Peaks factor=IRF3 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Irf3IggmusPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescChd1a301218aStdSig H1-hESC CHD1 bigWig 0.040000 32837.601562 H1-hESC CHD1 (A301-218A) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 29 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC CHD1 (A301-218A) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC CHD1\ subGroups view=Signal factor=CHD1A301218A cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescChd1a301218aStdSig\ type bigWig 0.040000 32837.601562\ wgEncodeCaltechRnaSeqH1hescR2x75Il200SplicesRep4V2 H1ES 2x75 Sp 4 bam H1-hESC 200 bp paired read RNA-seq Splices Rep 4 from ENCODE/Caltech 0 29 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC 200 bp paired read RNA-seq Splices Rep 4 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel H1ES 2x75 Sp 4\ subGroups view=Splices cellType=t1H1HESC insertLength=il200 readType=a1R2x75 rep=rep4 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR2x75Il200SplicesRep4V2\ type bam\ wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapPlusRawRep1 H1ES cell TAP + 1 bigWig 1.000000 1064486.000000 H1-hESC TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 29 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal on\ shortLabel H1ES cell TAP + 1\ subGroups view=PlusSignal cellType=t1H1HESC localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapPlusRawRep1\ type bigWig 1.000000 1064486.000000\ wgEncodeHaibGenotypeHcfRegionsRep1 HCF 1 bed 9 + HCF Copy number variants Replicate 1 from ENCODE/HAIB 0 29 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HCF Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HCF 1\ subGroups cellType=t3HCF obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeHcfRegionsRep1\ type bed 9 +\ wgEncodeHaibMethyl450HcpeSitesRep1 HCPEpiC bed 9 HCPEpiC Methylation 450K Bead Array from ENCODE/HAIB 1 29 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpiC Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel HCPEpiC\ subGroups cellType=t3HCPEPIC obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450HcpeSitesRep1\ type bed 9\ wgEncodeUwRepliSeqHelas3WaveSignalRep1 HeLa-S3 Ws 1 bigWig -5.460803 85.228607 HeLa-S3 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW 2 29 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewWaveSignal\ shortLabel HeLa-S3 Ws 1\ subGroups view=v4WaveSignal cellType=t2HELAS3 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqHelas3WaveSignalRep1\ type bigWig -5.460803 85.228607\ wgEncodeUwTfbsHelas3CtcfStdRawRep2 HeLaS3 CTCF Sg 2 bigWig 1.000000 3763.000000 HeLa-S3 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 29 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HeLaS3 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t2HELAS3 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHelas3CtcfStdRawRep2\ type bigWig 1.000000 3763.000000\ wgEncodeUwDnaseHelas3PkRep1 HeLaS3 Pk 1 narrowPeak HeLa-S3 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 29 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HeLaS3 Pk 1\ subGroups view=Peaks cellType=t2HELAS3 rep=rep1 treatment=None\ track wgEncodeUwDnaseHelas3PkRep1\ type narrowPeak\ wgEncodeOpenChromFaireHepg2Sig HepG2 FAIRE DS bigWig 0.000000 0.832300 HepG2 FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 29 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel HepG2 FAIRE DS\ subGroups view=SIG cellType=t2HEPG2 treatment=AANONE\ track wgEncodeOpenChromFaireHepg2Sig\ type bigWig 0.000000 0.832300\ wgEncodeDukeAffyExonHuvecSimpleSignalRep2V2 HUVEC 2 bigBed 6 + HUVEC Exon array Signal Rep 2 from ENCODE/Duke 0 29 224 75 0 239 165 127 1 0 0 expression 1 color 224,75,0\ longLabel HUVEC Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HUVEC 2\ subGroups cellType=t2HUVEC treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonHuvecSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeUwHistoneK562H3k27me3StdHotspotsRep2 K562 H3K27M3 Ht 2 broadPeak K562 H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 29 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot on\ shortLabel K562 H3K27M3 Ht 2\ subGroups view=Hot factor=H3K27ME3 cellType=t1K562 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneK562H3k27me3StdHotspotsRep2\ type broadPeak\ wgEncodeOpenChromChipK562InputSig K562 Input DS bigWig 0.000000 3.978400 K562 Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 29 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal\ shortLabel K562 Input DS\ subGroups treatment=AANONE view=SIG factor=zCTRL cellType=t1K562\ track wgEncodeOpenChromChipK562InputSig\ type bigWig 0.000000 3.978400\ wgEncodeGisRnaPetK562NucleusPapClustersRep1 K562 nucl pA+ 1 bed 6 + K562 nucleus polyA+ clone-based RNA PET Clusters Rep 1 from ENCODE/GIS 2 29 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleus polyA+ clone-based RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel K562 nucl pA+ 1\ subGroups view=v1Clusters cellType=aK562 cloned=Based localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562NucleusPapClustersRep1\ type bed 6 +\ wgEncodeSunyRipSeqK562Pabpc1SigRep2 K562 PABPC1 2 bigWig 0.000000 57200.070312 K562 PABPC1 RIP-seq Signal Rep 2 from ENCODE/SUNY 2 29 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 PABPC1 RIP-seq Signal Rep 2 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewSignal off\ shortLabel K562 PABPC1 2\ subGroups view=Signal factor=PABPC1 cellType=t1K562 rep=rep2\ track wgEncodeSunyRipSeqK562Pabpc1SigRep2\ type bigWig 0.000000 57200.070312\ wgEncodeGisChiaPetNb4Pol2InteractionsRep1 NB4 Pol2 Int 1 bed 12 NB4 Pol2 ChIA-PET Interactions Rep 1 from ENCODE/GIS-Ruan 2 29 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NB4 Pol2 ChIA-PET Interactions Rep 1 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetInteractions off\ shortLabel NB4 Pol2 Int 1\ subGroups view=Interactions factor=POL2 cellType=t3NB4 rep=rep1\ track wgEncodeGisChiaPetNb4Pol2InteractionsRep1\ type bed 12\ wgEncodeSydhHistoneNt2d1H3k09me3UcdSig NT2-D1 H3K9me3 bigWig 1.000000 86089.000000 NT2D1 H3K9me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 29 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NT2D1 H3K9me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel NT2-D1 H3K9me3\ subGroups view=Signal factor=H3K09ME3 cellType=cNT2D1 control=UCD treatment=NONE\ track wgEncodeSydhHistoneNt2d1H3k09me3UcdSig\ type bigWig 1.000000 86089.000000\ gtexEqtlTissueOvary ovary bed 9 + Expression QTL in Ovary from GTEx V6 0 29 255 182 193 255 218 224 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 255,182,193\ idInUrlSql select gene from gtexEqtlTissueOvary where name='%s'\ longLabel Expression QTL in Ovary from GTEx V6\ parent gtexEqtlTissue on\ shortLabel ovary\ track gtexEqtlTissueOvary\ dhcHumDerDenAncRegFixed RegRegion Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: Regulatory Region 3 29 230 150 0 242 202 127 0 0 0 denisova 1 color 230,150,0\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: Regulatory Region\ parent dhcHumDerDenAncReg off\ shortLabel RegRegion Fxd\ subGroups view=Reg subset=DC_Reg freq=Fixed\ track dhcHumDerDenAncRegFixed\ wgEncodeHaibRnaSeqSknshRawRep1 SK-N-SH 1 bigWig 0.139722 938.793030 SK-N-SH RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 29 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel SK-N-SH 1\ subGroups view=RawSignal cellType=t2SKNSH treatment=zNONE rep=rep1\ track wgEncodeHaibRnaSeqSknshRawRep1\ type bigWig 0.139722 938.793030\ Agilent_Human_Exon_V4_Regions SureSel. V4 T bigBed Agilent - SureSelect All Exon V4 Target Regions 0 29 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S03723314_Regions.bb\ color 120,94,240\ longLabel Agilent - SureSelect All Exon V4 Target Regions\ parent exomeProbesets off\ shortLabel SureSel. V4 T\ track Agilent_Human_Exon_V4_Regions\ type bigBed\ pgNA19238CG YRI NA19238 pgSnp YRI NA19238 (Mother) (Complete Genomics) 0 29 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA19238 (Mother) (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA19238\ subGroups view=C_CG id=BJ_19238 type=SNP\ track pgNA19238CG\ netTetNig2 Tetraodon Net netAlign tetNig2 chainTetNig2 Tetraodon (Mar. 2007 (Genoscope 8.0/tetNig2)) Alignment Net 1 30 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Tetraodon (Mar. 2007 (Genoscope 8.0/tetNig2)) Alignment Net\ otherDb tetNig2\ parent vertebrateChainNetViewnet off\ shortLabel Tetraodon Net\ subGroups view=net species=s062 clade=c06\ track netTetNig2\ type netAlign tetNig2 chainTetNig2\ netSorAra2 Shrew Net netAlign sorAra2 chainSorAra2 Shrew (Aug. 2008 (Broad/sorAra2)) Alignment Net 1 30 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Shrew (Aug. 2008 (Broad/sorAra2)) Alignment Net\ otherDb sorAra2\ parent placentalChainNetViewnet off\ shortLabel Shrew Net\ subGroups view=net species=s093 clade=c04\ track netSorAra2\ type netAlign sorAra2 chainSorAra2\ wgEncodeOpenChromChipA549CtcfPkRep1 A549 CTCF Pk narrowPeak A549 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 30 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel A549 CTCF Pk\ subGroups treatment=AANONE view=Peaks factor=CTCF cellType=t2A549\ track wgEncodeOpenChromChipA549CtcfPkRep1\ type narrowPeak\ encTfChipPkENCFF648ZNE A549 NR3C1 3 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF648ZNE) 1 30 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF648ZNE)\ parent encTfChipPk off\ shortLabel A549 NR3C1 3\ subGroups cellType=A549 factor=NR3C1\ track encTfChipPkENCFF648ZNE\ wgEncodeHaibMethylRrbsAg10803UwSitesRep2 AG10803 2 bed 9 + AG10803 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 30 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel AG10803 2\ subGroups cellType=t3AG10803 obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsAg10803UwSitesRep2\ type bed 9 +\ wgEncodeUwDgfAg10803Pk AG10803 Pk narrowPeak AG10803 DNaseI DGF Peaks from ENCODE/UW 0 30 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel AG10803 Pk\ subGroups view=Peaks cellType=t3AG10803 treatment=aNONE rep=rep1\ track wgEncodeUwDgfAg10803Pk\ type narrowPeak\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_ctss_rev AorticSmsToFgf2_02hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_reverse 0 30 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep2%20%28LK17%29.CNhs13363.12745-135I9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12745-135I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_02hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_tpm_rev AorticSmsToFgf2_02hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_reverse 1 30 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep2%20%28LK17%29.CNhs13363.12745-135I9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12745-135I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_02hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9\ urlLabel FANTOM5 Details:\ wgEncodeUwAffyExonArrayCaco2SimpleSignalRep1 Caco-2 1 broadPeak Caco-2 Exon array Signal Rep 1 from ENCODE/UW 0 30 0 0 0 127 127 127 0 0 0 expression 1 longLabel Caco-2 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel Caco-2 1\ subGroups cellType=t3CACO2 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayCaco2SimpleSignalRep1\ type broadPeak\ wgEncodeOpenChromDnaseCd20ro01794BaseOverlapSignal CD20 OS bigWig 0.000000 308.000000 B-cells CD20+ RO01794 DNaseI HS Overlap Signal from ENCODE/Duke 2 30 0 0 0 127 127 127 1 0 0 regulation 0 longLabel B-cells CD20+ RO01794 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel CD20 OS\ subGroups view=SIGBO cellType=t2BCELLSCD20RO01794 treatment=zNONE\ track wgEncodeOpenChromDnaseCd20ro01794BaseOverlapSignal\ type bigWig 0.000000 308.000000\ wgEncodeAwgTfbsSydhGm12878Ikzf1iknuclaUniPk GM12878 IKZF1 narrowPeak GM12878 TFBS Uniform Peaks of IKZF1_(IkN)_(UCLA) from ENCODE/USC/Analysis 1 30 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of IKZF1_(IkN)_(UCLA) from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 IKZF1\ subGroups tier=a10 cellType=a10GM12878 factor=IKZF1 lab=USC\ track wgEncodeAwgTfbsSydhGm12878Ikzf1iknuclaUniPk\ wgEncodeAwgDnaseDukeGm12891UniPk GM12891 DNase narrowPeak GM12891 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 30 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM12891 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel GM12891 DNase\ subGroups tier=a30 cellType=GM12891\ track wgEncodeAwgDnaseDukeGm12891UniPk\ wgEncodeRikenCageGm12878CellPapMinusSignalRep1 GM78 cell pA+ - 1 bigWig 1.000000 285019.000000 GM12878 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 30 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel GM78 cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t1GM12878 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageGm12878CellPapMinusSignalRep1\ type bigWig 1.000000 285019.000000\ wgEncodeHaibTfbsGm12878Creb1sc240V0422111RawRep1 GM78 CREB1 V11 1 bigWig 1.000000 4919.000000 GM12878 CREB1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 30 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 CREB1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 CREB1 V11 1\ subGroups view=RawSignal factor=CREB1SC240 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Creb1sc240V0422111RawRep1\ type bigWig 1.000000 4919.000000\ wgEncodeCshlLongRnaSeqGm12878CytosolPapMinusRawSigRep2 GM78 cyt pA+ - 2 bigWig 1.000000 652894.000000 GM12878 cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 30 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel GM78 cyt pA+ - 2\ subGroups view=MinusSignal cellType=t1GM12878 localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878CytosolPapMinusRawSigRep2\ type bigWig 1.000000 652894.000000\ wgEncodeSydhTfbsGm12878Irf3IggmusSig GM78 IRF3 IgM bigWig 1.000000 13791.000000 GM12878 IRF3 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 30 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 IRF3 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 IRF3 IgM\ subGroups view=Signal factor=IRF3 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Irf3IggmusSig\ type bigWig 1.000000 13791.000000\ wgEncodeBroadHistoneH1hescChd7a301223a1Pk H1-hESC CHD7 broadPeak H1-hESC CHD7 (A301-223A-1) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 30 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC CHD7 (A301-223A-1) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC CHD7\ subGroups view=Peaks factor=CHD7A301223A1 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescChd7a301223a1Pk\ type broadPeak\ wgEncodeCaltechRnaSeqH1hescR2x75Il400AlignsRep1V2 H1ES 400 A 1 bam H1-hESC 400 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 30 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC 400 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel H1ES 400 A 1\ subGroups view=Aligns cellType=t1H1HESC insertLength=il400 readType=a1R2x75400 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR2x75Il400AlignsRep1V2\ type bam\ wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapPlusRawRep2 H1ES cell TAP + 2 bigWig 1.000000 893102.000000 H1-hESC TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 30 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel H1ES cell TAP + 2\ subGroups view=PlusSignal cellType=t1H1HESC localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapPlusRawRep2\ type bigWig 1.000000 893102.000000\ wgEncodeHaibGenotypeHcfRegionsRep2 HCF 2 bed 9 + HCF Copy number variants Replicate 2 from ENCODE/HAIB 0 30 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HCF Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HCF 2\ subGroups cellType=t3HCF obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeHcfRegionsRep2\ type bed 9 +\ wgEncodeHaibMethyl450Hct116HaibSitesRep1 HCT-116 HAIB bed 9 HCT-116 HAIB Methylation 450K Bead Array from ENCODE/HAIB 1 30 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 HAIB Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel HCT-116 HAIB\ subGroups cellType=t3HCT116 obtainedBy=HAIB treatment=zNONE\ track wgEncodeHaibMethyl450Hct116HaibSitesRep1\ type bed 9\ wgEncodeUwRepliSeqHelas3SumSignalRep1 HeLa-S3 Sd 1 bigWig 1.000000 2522.000000 HeLa-S3 Repli-seq Summed Densities Rep 1 from ENCODE/UW 0 30 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Repli-seq Summed Densities Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewSumSignal off\ shortLabel HeLa-S3 Sd 1\ subGroups view=v5SumSignal cellType=t2HELAS3 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqHelas3SumSignalRep1\ type bigWig 1.000000 2522.000000\ wgEncodeUwTfbsHelas3InputStdRawRep1 HeLaS3 In Sg 1 bigWig 1.000000 10388.000000 HeLa-S3 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 30 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HeLaS3 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t2HELAS3 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHelas3InputStdRawRep1\ type bigWig 1.000000 10388.000000\ wgEncodeUwDnaseHelas3RawRep1 HeLaS3 Sg 1 bigWig 1.000000 47453.000000 HeLa-S3 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 30 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HeLaS3 Sg 1\ subGroups view=zRSig cellType=t2HELAS3 rep=rep1 treatment=None\ track wgEncodeUwDnaseHelas3RawRep1\ type bigWig 1.000000 47453.000000\ wgEncodeOpenChromFaireHepg2BaseOverlapSignal HepG2 FAIRE OS bigWig 0.000000 4481.000000 HepG2 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 30 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel HepG2 FAIRE OS\ subGroups view=SIGBO cellType=t2HEPG2 treatment=AANONE\ track wgEncodeOpenChromFaireHepg2BaseOverlapSignal\ type bigWig 0.000000 4481.000000\ wgEncodeUwHistoneK562H3k27me3StdPkRep2 K562 H3K27M3 Pk 2 narrowPeak K562 H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 30 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks on\ shortLabel K562 H3K27M3 Pk 2\ subGroups view=Peaks factor=H3K27ME3 cellType=t1K562 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneK562H3k27me3StdPkRep2\ type narrowPeak\ wgEncodeGisRnaPetK562NucleusPapMinusRawSigRep1 K562 nucl pA+ - 1 bigWig 1.000000 203666.000000 K562 nucleus polyA+ clone-based RNA PET Minus signal Rep 1 from ENCODE/GIS 2 30 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleus polyA+ clone-based RNA PET Minus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel K562 nucl pA+ - 1\ subGroups view=v2MinusRawSignal cellType=aK562 cloned=Based localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562NucleusPapMinusRawSigRep1\ type bigWig 1.000000 203666.000000\ wgEncodeSunyRipSeqK562T7tagAlnRep1 K562 T7Tag 1 bam K562 T7Tag RIP-seq Alignments Rep 1 from ENCODE/SUNY 0 30 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 T7Tag RIP-seq Alignments Rep 1 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewAlignments off\ shortLabel K562 T7Tag 1\ subGroups view=Alignments factor=T7Tag cellType=t1K562 rep=rep1\ track wgEncodeSunyRipSeqK562T7tagAlnRep1\ type bam\ wgEncodeDukeAffyExonMcf7CtcfshrnaSimpleSignalRep1 MCF-7 CTCFsh 1 bigBed 6 + MCF-7 CTCF shRNA knockdown Exon array Signal Rep 1 from ENCODE/Duke 0 30 0 0 0 127 127 127 1 0 0 expression 1 longLabel MCF-7 CTCF shRNA knockdown Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel MCF-7 CTCFsh 1\ subGroups cellType=t2MCF7 treatment=CTCFSHRNA rep=rep1\ track wgEncodeDukeAffyExonMcf7CtcfshrnaSimpleSignalRep1\ type bigBed 6 +\ wgEncodeGisChiaPetNb4Pol2SigRep1 NB4 Pol2 Sig 1 bigWig 1.000000 6024.000000 NB4 Pol2 ChIA-PET Signal Rep 1 from ENCODE/GIS-Ruan 2 30 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NB4 Pol2 ChIA-PET Signal Rep 1 from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPetSignal off\ shortLabel NB4 Pol2 Sig 1\ subGroups view=Signal factor=POL2 cellType=t3NB4 rep=rep1\ track wgEncodeGisChiaPetNb4Pol2SigRep1\ type bigWig 1.000000 6024.000000\ wgEncodeSydhHistoneNt2d1H3k9acbUcdPk NT2-D1 H3K9ac narrowPeak NT2D1 H3K9ac Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 30 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2D1 H3K9ac Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks on\ shortLabel NT2-D1 H3K9ac\ subGroups view=Peaks factor=H3K09acB cellType=cNT2D1 control=UCD treatment=NONE\ track wgEncodeSydhHistoneNt2d1H3k9acbUcdPk\ type narrowPeak\ gtexEqtlTissuePancreas pancreas bed 9 + Expression QTL in Pancreas from GTEx V6 0 30 205 155 29 230 205 142 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 205,155,29\ idInUrlSql select gene from gtexEqtlTissuePancreas where name='%s'\ longLabel Expression QTL in Pancreas from GTEx V6\ parent gtexEqtlTissue on\ shortLabel pancreas\ track gtexEqtlTissuePancreas\ dhcHumDerDenAncRegFixedDbSnp RegRegion FxS bigBed 4 + Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: Regulatory Region 3 30 230 150 0 242 202 127 0 0 0 denisova 1 color 230,150,0\ longLabel Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: Regulatory Region\ parent dhcHumDerDenAncReg off\ shortLabel RegRegion FxS\ subGroups view=Reg subset=DC_Reg freq=FixedDbSnp\ track dhcHumDerDenAncRegFixedDbSnp\ wgEncodeHaibRnaSeqSknshAlnRep1 SK-N-SH 1 bam SK-N-SH RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 30 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel SK-N-SH 1\ subGroups view=Alignments cellType=t2SKNSH treatment=zNONE rep=rep1\ track wgEncodeHaibRnaSeqSknshAlnRep1\ type bam\ Agilent_Human_Exon_V4_UTRs_Covered SureSel. V4+UTR P bigBed Agilent - SureSelect All Exon V4 + UTRs Covered by Probe 0 30 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S03723424_Covered.bb\ color 120,94,240\ longLabel Agilent - SureSelect All Exon V4 + UTRs Covered by Probe\ parent exomeProbesets off\ shortLabel SureSel. V4+UTR P\ track Agilent_Human_Exon_V4_UTRs_Covered\ type bigBed\ pgNA19238indel YRI NA19238 indel pgSnp YRI NA19238 (Mother) indel (Complete Genomics) 0 30 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA19238 (Mother) indel (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA19238 indel\ subGroups view=C_CG id=BJ_19238 type=Indel\ track pgNA19238indel\ chainPetMar2 Lamprey Chain chain petMar2 Lamprey (Sep. 2010 (WUGSC 7.0/petMar2)) Chained Alignments 3 31 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Lamprey (Sep. 2010 (WUGSC 7.0/petMar2)) Chained Alignments\ otherDb petMar2\ parent vertebrateChainNetViewchain off\ shortLabel Lamprey Chain\ subGroups view=chain species=s064b clade=c07\ track chainPetMar2\ type chain petMar2\ chainCerSim1 White rhinoceros Chain chain cerSim1 White rhinoceros (May 2012 (CerSimSim1.0/cerSim1)) Chained Alignments 3 31 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel White rhinoceros (May 2012 (CerSimSim1.0/cerSim1)) Chained Alignments\ otherDb cerSim1\ parent placentalChainNetViewchain off\ shortLabel White rhinoceros Chain\ subGroups view=chain species=s095 clade=c05\ track chainCerSim1\ type chain cerSim1\ wgEncodeOpenChromChipA549CtcfSig A549 CTCF DS bigWig 0.000000 8.870100 A549 CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 31 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel A549 CTCF DS\ subGroups treatment=AANONE view=SIG factor=CTCF cellType=t2A549\ track wgEncodeOpenChromChipA549CtcfSig\ type bigWig 0.000000 8.870100\ encTfChipPkENCFF150STV A549 NR3C1 4 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF150STV) 1 31 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF150STV)\ parent encTfChipPk off\ shortLabel A549 NR3C1 4\ subGroups cellType=A549 factor=NR3C1\ track encTfChipPkENCFF150STV\ wgEncodeUwDgfAg10803Sig AG10803 Sig bigWig 1.000000 106260.000000 AG10803 DNaseI DGF Per-base Signal from ENCODE/UW 2 31 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG10803 DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel AG10803 Sig\ subGroups view=Signal cellType=t3AG10803 treatment=aNONE rep=rep1\ track wgEncodeUwDgfAg10803Sig\ type bigWig 1.000000 106260.000000\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep3LK18_CNhs13572_ctss_fwd AorticSmsToFgf2_02hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep3 (LK18)_CNhs13572_12843-137B8_forward 0 31 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12843-137B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep3%20%28LK18%29.CNhs13572.12843-137B8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep3 (LK18)_CNhs13572_12843-137B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12843-137B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_02hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep3LK18_CNhs13572_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12843-137B8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep3LK18_CNhs13572_tpm_fwd AorticSmsToFgf2_02hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep3 (LK18)_CNhs13572_12843-137B8_forward 1 31 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12843-137B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep3%20%28LK18%29.CNhs13572.12843-137B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep3 (LK18)_CNhs13572_12843-137B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12843-137B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_02hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep3LK18_CNhs13572_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12843-137B8\ urlLabel FANTOM5 Details:\ wgEncodeHaibMethylRrbsAosmcDukeSitesRep1 AoSMC 1 bed 9 + AoSMC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 31 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoSMC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel AoSMC 1\ subGroups cellType=t3AOSMC obtainedBy=DUKE treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsAosmcDukeSitesRep1\ type bed 9 +\ wgEncodeUwAffyExonArrayCaco2SimpleSignalRep2 Caco-2 2 broadPeak Caco-2 Exon array Signal Rep 2 from ENCODE/UW 0 31 0 0 0 127 127 127 0 0 0 expression 1 longLabel Caco-2 Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel Caco-2 2\ subGroups cellType=t3CACO2 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayCaco2SimpleSignalRep2\ type broadPeak\ wgEncodeAwgTfbsHaibGm12878Irf4sc6059Pcr1xUniPk GM12878 IRF4 narrowPeak GM12878 TFBS Uniform Peaks of IRF4_(SC-6059) from ENCODE/HudsonAlpha/Analysis 1 31 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of IRF4_(SC-6059) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 IRF4\ subGroups tier=a10 cellType=a10GM12878 factor=IRF4 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Irf4sc6059Pcr1xUniPk\ wgEncodeAwgDnaseDukeGm12892UniPk GM12892 DNase narrowPeak GM12892 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 31 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM12892 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel GM12892 DNase\ subGroups tier=a30 cellType=GM12892\ track wgEncodeAwgDnaseDukeGm12892UniPk\ wgEncodeRikenCageGm12878CellPapMinusSignalRep2 GM78 cell pA+ - 2 bigWig 1.000000 304430.000000 GM12878 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 31 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel GM78 cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t1GM12878 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageGm12878CellPapMinusSignalRep2\ type bigWig 1.000000 304430.000000\ wgEncodeHaibTfbsGm12878Creb1sc240V0422111PkRep2 GM78 CREB1 V11 2 broadPeak GM12878 CREB1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 31 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 CREB1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 CREB1 V11 2\ subGroups view=Peaks factor=CREB1SC240 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Creb1sc240V0422111PkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqGm12878CytosolPapPlusRawSigRep1 GM78 cyt pA+ + 1 bigWig 1.000000 1310264.000000 GM12878 cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 31 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel GM78 cyt pA+ + 1\ subGroups view=PlusSignal cellType=t1GM12878 localization=CYTOSOL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878CytosolPapPlusRawSigRep1\ type bigWig 1.000000 1310264.000000\ wgEncodeSydhTfbsGm12878JundIggrabPk GM78 JunD IgR narrowPeak GM12878 JunD IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 31 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 JunD IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 JunD IgR\ subGroups view=Peaks factor=JUND cellType=t1GM12878 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsGm12878JundIggrabPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescChd7a301223a1Sig H1-hESC CHD7 bigWig 0.040000 400.000000 H1-hESC CHD7 (A301-223A-1) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 31 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC CHD7 (A301-223A-1) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC CHD7\ subGroups view=Signal factor=CHD7A301223A1 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescChd7a301223a1Sig\ type bigWig 0.040000 400.000000\ wgEncodeCaltechRnaSeqH1hescR2x75Th1014Il400SigRep1V4 H1ES 400 Sg 1 bigWig 0.025000 239583.453125 H1-hESC 400 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech 2 31 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC 400 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel H1ES 400 Sg 1\ subGroups view=Signal cellType=t1H1HESC insertLength=il400 readType=a1R2x75400 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR2x75Th1014Il400SigRep1V4\ type bigWig 0.025000 239583.453125\ wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalTapContigsV2 H1ES cyto TAP C bed 6 H1-hESC TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL 2 31 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel H1ES cyto TAP C\ subGroups view=Contigs cellType=t1H1HESC localization=CYTOSOL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalTapContigsV2\ type bed 6\ wgEncodeHaibGenotypeHcmRegionsRep1 HCM 1 bed 9 + HCM Copy number variants Replicate 1 from ENCODE/HAIB 0 31 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HCM Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HCM 1\ subGroups cellType=t3HCM obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeHcmRegionsRep1\ type bed 9 +\ wgEncodeHaibMethyl450Hct116StanfordSitesRep1 HCT-116 Stanford bed 9 HCT-116 Stanford Methylation 450K Bead Array from ENCODE/HAIB 1 31 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 Stanford Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel HCT-116 Stanford\ subGroups cellType=t3HCT116 obtainedBy=Stanford treatment=zNONE\ track wgEncodeHaibMethyl450Hct116StanfordSitesRep1\ type bed 9\ wgEncodeUwDnaseHelas3HotspotsRep2 HeLaS3 Ht 2 broadPeak HeLa-S3 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 31 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HeLaS3 Ht 2\ subGroups view=Hot cellType=t2HELAS3 rep=rep2 treatment=None\ track wgEncodeUwDnaseHelas3HotspotsRep2\ type broadPeak\ wgEncodeOpenChromDnaseHelas3Ifna4hPk HeLaS3 IFNa 4h Pk narrowPeak HeLa-S3 IFN-a 4 h DNaseI HS Peaks from ENCODE/Duke 3 31 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 IFN-a 4 h DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel HeLaS3 IFNa 4h Pk\ subGroups view=Peaks cellType=t2HELAS3 treatment=IFNa4h\ track wgEncodeOpenChromDnaseHelas3Ifna4hPk\ type narrowPeak\ wgEncodeUwTfbsHepg2CtcfStdHotspotsRep1 HepG2 CTCF Ht 1 broadPeak HepG2 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 31 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HepG2 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t2HEPG2 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHepg2CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeUwRepliSeqHepg2G1bPctSignalRep1 HepG2 G1b 1 bigWig 1.000000 100.000000 HepG2 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 31 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HepG2 G1b 1\ subGroups view=v1PctSignal cellType=t2HEPG2 phase=p1G1B rep=rep1\ track wgEncodeUwRepliSeqHepg2G1bPctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromFaireHuvecPk HUVEC FAIRE Pk narrowPeak HUVEC FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 31 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel HUVEC FAIRE Pk\ subGroups view=Peaks cellType=t2HUVEC treatment=AANONE\ track wgEncodeOpenChromFaireHuvecPk\ type narrowPeak\ wgEncodeUwHistoneK562H3k27me3StdRawRep2 K562 H3K27M3 Sg 2 bigWig 1.000000 5758.000000 K562 H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 31 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig on\ shortLabel K562 H3K27M3 Sg 2\ subGroups view=zRSig factor=H3K27ME3 cellType=t1K562 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneK562H3k27me3StdRawRep2\ type bigWig 1.000000 5758.000000\ wgEncodeGisRnaPetK562NucleusPapPlusRawSigRep1 K562 nucl pA+ + 1 bigWig 1.000000 83090.000000 K562 nucleus polyA+ clone-based RNA PET Plus signal Rep 1 from ENCODE/GIS 2 31 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleus polyA+ clone-based RNA PET Plus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel K562 nucl pA+ + 1\ subGroups view=v2PlusRawSignal cellType=aK562 cloned=Based localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562NucleusPapPlusRawSigRep1\ type bigWig 1.000000 83090.000000\ wgEncodeSunyRipSeqK562T7tagAlnRep2 K562 T7Tag 2 bam K562 T7Tag RIP-seq Alignments Rep 2 from ENCODE/SUNY 0 31 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 T7Tag RIP-seq Alignments Rep 2 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewAlignments off\ shortLabel K562 T7Tag 2\ subGroups view=Alignments factor=T7Tag cellType=t1K562 rep=rep2\ track wgEncodeSunyRipSeqK562T7tagAlnRep2\ type bam\ wgEncodeDukeAffyExonMcf7CtcfshrnaSimpleSignalRep2 MCF-7 CTCFsh 2 bigBed 6 + MCF-7 CTCF shRNA knockdown Exon array Signal Rep 2 from ENCODE/Duke 0 31 0 0 0 127 127 127 1 0 0 expression 1 longLabel MCF-7 CTCF shRNA knockdown Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel MCF-7 CTCFsh 2\ subGroups cellType=t2MCF7 treatment=CTCFSHRNA rep=rep2\ track wgEncodeDukeAffyExonMcf7CtcfshrnaSimpleSignalRep2\ type bigBed 6 +\ wgEncodeSydhHistoneNt2d1H3k9acbUcdSig NT2-D1 H3K9ac bigWig 1.000000 6350.000000 NT2D1 H3K9ac Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 31 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NT2D1 H3K9ac Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal on\ shortLabel NT2-D1 H3K9ac\ subGroups view=Signal factor=H3K09acB cellType=cNT2D1 control=UCD treatment=NONE\ track wgEncodeSydhHistoneNt2d1H3k9acbUcdSig\ type bigWig 1.000000 6350.000000\ gtexEqtlTissuePituitary pituitary bed 9 + Expression QTL in Pituitary from GTEx V6 0 31 180 238 180 217 246 217 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 180,238,180\ idInUrlSql select gene from gtexEqtlTissuePituitary where name='%s'\ longLabel Expression QTL in Pituitary from GTEx V6\ parent gtexEqtlTissue on\ shortLabel pituitary\ track gtexEqtlTissuePituitary\ dhcHumDerDenAncRegHighFreq RegRegion HiF bigBed 4 + Modern Human Derived (HighFreq), Denisova Ancestral: Regulatory Region 3 31 230 150 0 242 202 127 0 0 0 denisova 1 color 230,150,0\ longLabel Modern Human Derived (HighFreq), Denisova Ancestral: Regulatory Region\ parent dhcHumDerDenAncReg off\ shortLabel RegRegion HiF\ subGroups view=Reg subset=DC_Reg freq=HighFreq\ track dhcHumDerDenAncRegHighFreq\ wgEncodeHaibRnaSeqSknshRawRep2 SK-N-SH 2 bigWig 0.149537 705.216003 SK-N-SH RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 31 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel SK-N-SH 2\ subGroups view=RawSignal cellType=t2SKNSH treatment=zNONE rep=rep2\ track wgEncodeHaibRnaSeqSknshRawRep2\ type bigWig 0.149537 705.216003\ Agilent_Human_Exon_V4_UTRs_Regions SureSel. V4+UTR T bigBed Agilent - SureSelect All Exon V4 + UTRs Target Regions 0 31 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S03723424_Regions.bb\ color 120,94,240\ longLabel Agilent - SureSelect All Exon V4 + UTRs Target Regions\ parent exomeProbesets off\ shortLabel SureSel. V4+UTR T\ track Agilent_Human_Exon_V4_UTRs_Regions\ type bigBed\ pgNA19239CG YRI NA19239 pgSnp YRI NA19239 (Father) (Complete Genomics) 0 31 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA19239 (Father) (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA19239\ subGroups view=C_CG id=BK_19239 type=SNP\ track pgNA19239CG\ netPetMar2 Lamprey Net netAlign petMar2 chainPetMar2 Lamprey (Sep. 2010 (WUGSC 7.0/petMar2)) Alignment Net 1 32 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Lamprey (Sep. 2010 (WUGSC 7.0/petMar2)) Alignment Net\ otherDb petMar2\ parent vertebrateChainNetViewnet off\ shortLabel Lamprey Net\ subGroups view=net species=s064b clade=c07\ track netPetMar2\ type netAlign petMar2 chainPetMar2\ netCerSim1 White rhinoceros Net netAlign cerSim1 chainCerSim1 White rhinoceros (May 2012 (CerSimSim1.0/cerSim1)) Alignment Net 1 32 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel White rhinoceros (May 2012 (CerSimSim1.0/cerSim1)) Alignment Net\ otherDb cerSim1\ parent placentalChainNetViewnet off\ shortLabel White rhinoceros Net\ subGroups view=net species=s095 clade=c05\ track netCerSim1\ type netAlign cerSim1 chainCerSim1\ wgEncodeOpenChromChipA549CtcfBaseOverlapSignal A549 CTCF OS bigWig 0.000000 4497.000000 A549 CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 32 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel A549 CTCF OS\ subGroups treatment=AANONE view=SIGBO factor=CTCF cellType=t2A549\ track wgEncodeOpenChromChipA549CtcfBaseOverlapSignal\ type bigWig 0.000000 4497.000000\ encTfChipPkENCFF495YRW A549 NR3C1 5 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF495YRW) 1 32 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF495YRW)\ parent encTfChipPk off\ shortLabel A549 NR3C1 5\ subGroups cellType=A549 factor=NR3C1\ track encTfChipPkENCFF495YRW\ wgEncodeUwDgfAg10803Raw AG10803 Raw bigWig 1.000000 335063.000000 AG10803 DNaseI DGF Raw Signal from ENCODE/UW 0 32 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG10803 DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel AG10803 Raw\ subGroups view=zRaw cellType=t3AG10803 treatment=aNONE rep=rep1\ track wgEncodeUwDgfAg10803Raw\ type bigWig 1.000000 335063.000000\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep3LK18_CNhs13572_ctss_rev AorticSmsToFgf2_02hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep3 (LK18)_CNhs13572_12843-137B8_reverse 0 32 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12843-137B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep3%20%28LK18%29.CNhs13572.12843-137B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep3 (LK18)_CNhs13572_12843-137B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12843-137B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_02hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep3LK18_CNhs13572_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12843-137B8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep3LK18_CNhs13572_tpm_rev AorticSmsToFgf2_02hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep3 (LK18)_CNhs13572_12843-137B8_reverse 1 32 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12843-137B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep3%20%28LK18%29.CNhs13572.12843-137B8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep3 (LK18)_CNhs13572_12843-137B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12843-137B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_02hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep3LK18_CNhs13572_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12843-137B8\ urlLabel FANTOM5 Details:\ wgEncodeHaibMethylRrbsAosmcDukeSitesRep2 AoSMC 2 bed 9 + AoSMC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 32 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoSMC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel AoSMC 2\ subGroups cellType=t3AOSMC obtainedBy=DUKE treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsAosmcDukeSitesRep2\ type bed 9 +\ wgEncodeUwAffyExonArrayCmkSimpleSignalRep1 CMK 1 broadPeak CMK Exon array Signal Rep 1 from ENCODE/UW 0 32 0 0 0 127 127 127 0 0 0 expression 1 longLabel CMK Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel CMK 1\ subGroups cellType=t3CMK rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayCmkSimpleSignalRep1\ type broadPeak\ dhcHumDerDenAncFrameshiftCodingFixed FrShft Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: Frameshift Coding 0 32 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: Frameshift Coding\ parent dhcHumDerDenAncEns\ shortLabel FrShft Fxd\ subGroups view=Ens subset=FrameshiftCoding freq=Fixed\ track dhcHumDerDenAncFrameshiftCodingFixed\ wgEncodeAwgTfbsSydhGm12878JundUniPk GM12878 JUND narrowPeak GM12878 TFBS Uniform Peaks of JunD from ENCODE/Yale/Analysis 1 32 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of JunD from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 JUND\ subGroups tier=a10 cellType=a10GM12878 factor=JUND lab=Yale\ track wgEncodeAwgTfbsSydhGm12878JundUniPk\ wgEncodeAwgDnaseDukeGm18507UniPk GM18507 DNase narrowPeak GM18507 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 32 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM18507 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel GM18507 DNase\ subGroups tier=a30 cellType=GM18507\ track wgEncodeAwgDnaseDukeGm18507UniPk\ wgEncodeRikenCageGm12878CellPapAlnRep1 GM78 cell pA+ A 1 bam GM12878 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 32 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel GM78 cell pA+ A 1\ subGroups view=Alignments cellType=t1GM12878 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageGm12878CellPapAlnRep1\ type bam\ wgEncodeHaibTfbsGm12878Creb1sc240V0422111RawRep2 GM78 CREB1 V11 2 bigWig 1.000000 2888.000000 GM12878 CREB1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 32 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 CREB1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 CREB1 V11 2\ subGroups view=RawSignal factor=CREB1SC240 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Creb1sc240V0422111RawRep2\ type bigWig 1.000000 2888.000000\ wgEncodeCshlLongRnaSeqGm12878CytosolPapPlusRawSigRep2 GM78 cyt pA+ + 2 bigWig 1.000000 755125.000000 GM12878 cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 32 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel GM78 cyt pA+ + 2\ subGroups view=PlusSignal cellType=t1GM12878 localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878CytosolPapPlusRawSigRep2\ type bigWig 1.000000 755125.000000\ wgEncodeSydhTfbsGm12878JundIggrabSig GM78 JunD IgR bigWig 1.000000 416.000000 GM12878 JunD IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 32 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 JunD IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 JunD IgR\ subGroups view=Signal factor=JUND cellType=t1GM12878 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsGm12878JundIggrabSig\ type bigWig 1.000000 416.000000\ wgEncodeBroadHistoneH1hescCtcfStdPk H1-hESC CTCF broadPeak H1-hESC CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 32 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks\ shortLabel H1-hESC CTCF\ subGroups view=Peaks factor=CTCF cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescCtcfStdPk\ type broadPeak\ wgEncodeCaltechRnaSeqH1hescR2x75Il400SplicesRep1V2 H1ES 400 Sp 1 bam H1-hESC 400 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 32 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC 400 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel H1ES 400 Sp 1\ subGroups view=Splices cellType=t1H1HESC insertLength=il400 readType=a1R2x75400 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR2x75Il400SplicesRep1V2\ type bam\ wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalTapMinusRawRep2 H1ES cyto TAP - 2 bigWig 1.000000 8090327.000000 H1-hESC TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 32 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel H1ES cyto TAP - 2\ subGroups view=MinusSignal cellType=t1H1HESC localization=CYTOSOL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalTapMinusRawRep2\ type bigWig 1.000000 8090327.000000\ wgEncodeHaibGenotypeHcmRegionsRep2 HCM 2 bed 9 + HCM Copy number variants Replicate 2 from ENCODE/HAIB 0 32 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HCM Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HCM 2\ subGroups cellType=t3HCM obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeHcmRegionsRep2\ type bed 9 +\ wgEncodeHaibMethyl450HeeSitesRep1 HEEpiC bed 9 HEEpiC Methylation 450K Bead Array from ENCODE/HAIB 1 32 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpiC Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel HEEpiC\ subGroups cellType=t3HEEPIC obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450HeeSitesRep1\ type bed 9\ wgEncodeOpenChromDnaseHelas3Ifna4hSig HeLaS3 IFNa 4h DS bigWig 0.000000 0.761900 HeLa-S3 IFN-a 4 h DNaseI HS Density Signal from ENCODE/Duke 2 32 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 IFN-a 4 h DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel HeLaS3 IFNa 4h DS\ subGroups view=SIG cellType=t2HELAS3 treatment=IFNa4h\ track wgEncodeOpenChromDnaseHelas3Ifna4hSig\ type bigWig 0.000000 0.761900\ wgEncodeUwDnaseHelas3PkRep2 HeLaS3 Pk 2 narrowPeak HeLa-S3 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 32 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HeLaS3 Pk 2\ subGroups view=Peaks cellType=t2HELAS3 rep=rep2 treatment=None\ track wgEncodeUwDnaseHelas3PkRep2\ type narrowPeak\ wgEncodeUwTfbsHepg2CtcfStdPkRep1 HepG2 CTCF Pk 1 narrowPeak HepG2 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 32 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HepG2 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t2HEPG2 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHepg2CtcfStdPkRep1\ type narrowPeak\ wgEncodeUwRepliSeqHepg2S1PctSignalRep1 HepG2 S1 1 bigWig 1.000000 100.000000 HepG2 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 32 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HepG2 S1 1\ subGroups view=v1PctSignal cellType=t2HEPG2 phase=p2S1 rep=rep1\ track wgEncodeUwRepliSeqHepg2S1PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromFaireHuvecSig HUVEC FAIRE DS bigWig 0.000000 1.260500 HUVEC FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 32 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel HUVEC FAIRE DS\ subGroups view=SIG cellType=t2HUVEC treatment=AANONE\ track wgEncodeOpenChromFaireHuvecSig\ type bigWig 0.000000 1.260500\ wgEncodeUwHistoneK562H3k36me3StdHotspotsRep1 K562 H3K36M3 Ht 1 broadPeak K562 H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 32 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot on\ shortLabel K562 H3K36M3 Ht 1\ subGroups view=Hot factor=H3K36ME3 cellType=t1K562 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneK562H3k36me3StdHotspotsRep1\ type broadPeak\ wgEncodeGisRnaPetK562NucleusPapAlnRep1 K562 nucl pA+ A 1 bam K562 nucleus polyA+ clone-based RNA PET Alignments Rep 1 from ENCODE/GIS 0 32 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleus polyA+ clone-based RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel K562 nucl pA+ A 1\ subGroups view=v3Alignments cellType=aK562 cloned=Based localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562NucleusPapAlnRep1\ type bam\ wgEncodeSunyRipSeqK562T7tagSigRep1 K562 T7Tag 1 bigWig 0.000000 74535.296875 K562 T7Tag RIP-seq Signal Rep 1 from ENCODE/SUNY 2 32 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 T7Tag RIP-seq Signal Rep 1 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewSignal off\ shortLabel K562 T7Tag 1\ subGroups view=Signal factor=T7Tag cellType=t1K562 rep=rep1\ track wgEncodeSunyRipSeqK562T7tagSigRep1\ type bigWig 0.000000 74535.296875\ wgEncodeDukeAffyExonMcf7CtcfshrnaSimpleSignalRep3 MCF-7 CTCFsh 3 bigBed 6 + MCF-7 CTCF shRNA knockdown Exon array Signal Rep 3 from ENCODE/Duke 0 32 0 0 0 127 127 127 1 0 0 expression 1 longLabel MCF-7 CTCF shRNA knockdown Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel MCF-7 CTCFsh 3\ subGroups cellType=t2MCF7 treatment=CTCFSHRNA rep=rep3\ track wgEncodeDukeAffyExonMcf7CtcfshrnaSimpleSignalRep3\ type bigBed 6 +\ wgEncodeSydhHistoneNt2d1H3k27me3bUcdPk NT2-D1 H3K27me3 narrowPeak NT2D1 H3K27me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 32 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2D1 H3K27me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks on\ shortLabel NT2-D1 H3K27me3\ subGroups view=Peaks factor=H3K27me3B cellType=cNT2D1 control=UCD treatment=NONE\ track wgEncodeSydhHistoneNt2d1H3k27me3bUcdPk\ type narrowPeak\ gtexEqtlTissueProstate prostate bed 9 + Expression QTL in Prostate from GTEx V6 0 32 217 217 217 236 236 236 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 217,217,217\ idInUrlSql select gene from gtexEqtlTissueProstate where name='%s'\ longLabel Expression QTL in Prostate from GTEx V6\ parent gtexEqtlTissue on\ shortLabel prostate\ track gtexEqtlTissueProstate\ wgEncodeHaibRnaSeqSknshAlnRep2 SK-N-SH 2 bam SK-N-SH RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 32 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel SK-N-SH 2\ subGroups view=Alignments cellType=t2SKNSH treatment=zNONE rep=rep2\ track wgEncodeHaibRnaSeqSknshAlnRep2\ type bam\ Agilent_Human_Exon_V5_Covered SureSel. V5 P bigBed Agilent - SureSelect All Exon V5 Covered by Probes 0 32 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S04380110_Covered.bb\ color 120,94,240\ longLabel Agilent - SureSelect All Exon V5 Covered by Probes\ parent exomeProbesets off\ shortLabel SureSel. V5 P\ track Agilent_Human_Exon_V5_Covered\ type bigBed\ pgNA19239indel YRI NA19239 indel pgSnp YRI NA19239 (Father) indel (Complete Genomics) 0 32 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA19239 (Father) indel (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA19239 indel\ subGroups view=C_CG id=BK_19239 type=Indel\ track pgNA19239indel\ chainEquCab2 Horse Chain chain equCab2 Horse (Sep. 2007 (Broad/equCab2)) Chained Alignments 3 33 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Horse (Sep. 2007 (Broad/equCab2)) Chained Alignments\ otherDb equCab2\ parent placentalChainNetViewchain off\ shortLabel Horse Chain\ subGroups view=chain species=s096b clade=c05\ track chainEquCab2\ type chain equCab2\ encTfChipPkENCFF841IFL A549 NR3C1 6 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF841IFL) 1 33 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF841IFL)\ parent encTfChipPk off\ shortLabel A549 NR3C1 6\ subGroups cellType=A549 factor=NR3C1\ track encTfChipPkENCFF841IFL\ wgEncodeOpenChromChipA549Pol2PkRep1 A549 Pol2 Pk narrowPeak A549 Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 33 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel A549 Pol2 Pk\ subGroups treatment=AANONE view=Peaks factor=POL2 cellType=t2A549\ track wgEncodeOpenChromChipA549Pol2PkRep1\ type narrowPeak\ wgEncodeUwDgfAoafHotspots AoAF Hot broadPeak AoAF DNaseI DGF Hotspots from ENCODE/UW 0 33 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoAF DNaseI DGF Hotspots from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewHotspots off\ shortLabel AoAF Hot\ subGroups view=Hotspots cellType=t3AOAF treatment=aNONE rep=rep1\ track wgEncodeUwDgfAoafHotspots\ type broadPeak\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_ctss_fwd AorticSmsToFgf2_03hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_forward 0 33 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep1%20%28LK19%29.CNhs13345.12648-134H2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12648-134H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_03hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_tpm_fwd AorticSmsToFgf2_03hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_forward 1 33 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep1%20%28LK19%29.CNhs13345.12648-134H2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12648-134H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_03hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2\ urlLabel FANTOM5 Details:\ wgEncodeHaibRnaSeqBe2cRawRep1 BE2_C 1 bigWig 0.231311 1122.900024 BE2_C RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 33 0 0 0 127 127 127 0 0 0 expression 0 longLabel BE2_C RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel BE2_C 1\ subGroups view=RawSignal cellType=t3BE2C treatment=zNONE rep=rep1\ track wgEncodeHaibRnaSeqBe2cRawRep1\ type bigWig 0.231311 1122.900024\ wgEncodeHaibMethylRrbsBe2cHaibSitesRep1 BE2_C 1 bed 9 + BE2 C Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 33 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BE2 C Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel BE2_C 1\ subGroups cellType=t3BE2C obtainedBy=HAIB treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBe2cHaibSitesRep1\ type bed 9 +\ dhcHumDerDenAncFrameshiftCodingFixedDbSnp FrShft FxS bigBed 4 + Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: Frameshift Coding 0 33 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: Frameshift Coding\ parent dhcHumDerDenAncEns\ shortLabel FrShft FxS\ subGroups view=Ens subset=FrameshiftCoding freq=FixedDbSnp\ track dhcHumDerDenAncFrameshiftCodingFixedDbSnp\ wgEncodeUwAffyExonArrayGm06990SimpleSignalRep1 GM06990 1 broadPeak GM06990 Exon array Signal Rep 1 from ENCODE/UW 0 33 0 0 0 127 127 127 0 0 0 expression 1 longLabel GM06990 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel GM06990 1\ subGroups cellType=t3GM06990 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayGm06990SimpleSignalRep1\ type broadPeak\ wgEncodeAwgTfbsSydhGm12878MaxIggmusUniPk GM12878 MAX narrowPeak GM12878 TFBS Uniform Peaks of Max from ENCODE/Stanford/Analysis 1 33 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of Max from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 MAX\ subGroups tier=a10 cellType=a10GM12878 factor=MAX lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878MaxIggmusUniPk\ wgEncodeAwgDnaseDukeGm19238UniPk GM19238 DNase narrowPeak GM19238 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 33 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM19238 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel GM19238 DNase\ subGroups tier=a30 cellType=GM19238\ track wgEncodeAwgDnaseDukeGm19238UniPk\ wgEncodeRikenCageGm12878CellPapAlnRep2 GM78 cell pA+ A 2 bam GM12878 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 33 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel GM78 cell pA+ A 2\ subGroups view=Alignments cellType=t1GM12878 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageGm12878CellPapAlnRep2\ type bam\ wgEncodeHaibTfbsGm12878Ebfsc137065Pcr1xPkRep1 GM78 EBF1 PCR1 1 broadPeak GM12878 EBF1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 33 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 EBF1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 EBF1 PCR1 1\ subGroups view=Peaks factor=EBF1SC137065 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Ebfsc137065Pcr1xPkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878JundStdPk GM78 JunD Std narrowPeak GM12878 JunD Standard ChIP-seq Peaks from ENCODE/SYDH 3 33 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 JunD Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 JunD Std\ subGroups view=Peaks factor=JUND cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878JundStdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqGm12878NucleolusTotalAlnRep3 GM78 nlus tot A 3 bam GM12878 nucleolus total RNA-seq Alignments Rep 3 from ENCODE/CSHL 0 33 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleolus total RNA-seq Alignments Rep 3 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel GM78 nlus tot A 3\ subGroups view=Alignments cellType=t1GM12878 localization=NUCLEOLUS rnaExtract=TOTAL rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878NucleolusTotalAlnRep3\ type bam\ wgEncodeBroadHistoneH1hescCtcfStdSig H1-hESC CTCF bigWig 0.040000 23906.279297 H1-hESC CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 33 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal\ shortLabel H1-hESC CTCF\ subGroups view=Signal factor=CTCF cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescCtcfStdSig\ type bigWig 0.040000 23906.279297\ wgEncodeCaltechRnaSeqH1hescR1x75dAlignsRep1V2 H1ES 1x75D A 1 bam H1-hESC single read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 33 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC single read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel H1ES 1x75D A 1\ subGroups view=Aligns cellType=t1H1HESC insertLength=ilNa readType=r1x75D rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR1x75dAlignsRep1V2\ type bam\ wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalTapPlusRawRep2 H1ES cyto TAP + 2 bigWig 1.000000 448478.000000 H1-hESC TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 33 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel H1ES cyto TAP + 2\ subGroups view=PlusSignal cellType=t1H1HESC localization=CYTOSOL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalTapPlusRawRep2\ type bigWig 1.000000 448478.000000\ wgEncodeHaibGenotypeHcpeRegionsRep1 HCPEpiC 1 bed 9 + HCPEpiC Copy number variants Replicate 1 from ENCODE/HAIB 0 33 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HCPEpiC Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HCPEpiC 1\ subGroups cellType=t3HCPEPIC obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeHcpeRegionsRep1\ type bed 9 +\ wgEncodeHaibMethyl450Hek293SitesRep1 HEK293 bed 9 HEK293 Methylation 450K Bead Array from ENCODE/HAIB 1 33 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel HEK293\ subGroups cellType=t3HEK293 obtainedBy=Stanford treatment=zNONE\ track wgEncodeHaibMethyl450Hek293SitesRep1\ type bed 9\ wgEncodeOpenChromDnaseHelas3Ifna4hBaseOverlapSignal HeLaS3 IFNa 4h OS bigWig 0.000000 224.000000 HeLa-S3 IFN-a 4 h DNaseI HS Overlap Signal from ENCODE/Duke 2 33 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 IFN-a 4 h DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel HeLaS3 IFNa 4h OS\ subGroups view=SIGBO cellType=t2HELAS3 treatment=IFNa4h\ track wgEncodeOpenChromDnaseHelas3Ifna4hBaseOverlapSignal\ type bigWig 0.000000 224.000000\ wgEncodeUwDnaseHelas3RawRep2 HeLaS3 Sg 2 bigWig 1.000000 48046.000000 HeLa-S3 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 33 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HeLaS3 Sg 2\ subGroups view=zRSig cellType=t2HELAS3 rep=rep2 treatment=None\ track wgEncodeUwDnaseHelas3RawRep2\ type bigWig 1.000000 48046.000000\ wgEncodeUwTfbsHepg2CtcfStdRawRep1 HepG2 CTCF Sg 1 bigWig 1.000000 2546.000000 HepG2 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 33 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HepG2 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t2HEPG2 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHepg2CtcfStdRawRep1\ type bigWig 1.000000 2546.000000\ wgEncodeUwRepliSeqHepg2S2PctSignalRep1 HepG2 S2 1 bigWig 1.000000 100.000000 HepG2 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 33 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HepG2 S2 1\ subGroups view=v1PctSignal cellType=t2HEPG2 phase=p3S2 rep=rep1\ track wgEncodeUwRepliSeqHepg2S2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromFaireHuvecBaseOverlapSignal HUVEC FAIRE OS bigWig 0.000000 2531.000000 HUVEC FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 33 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel HUVEC FAIRE OS\ subGroups view=SIGBO cellType=t2HUVEC treatment=AANONE\ track wgEncodeOpenChromFaireHuvecBaseOverlapSignal\ type bigWig 0.000000 2531.000000\ wgEncodeUwHistoneK562H3k36me3StdPkRep1 K562 H3K36M3 Pk 1 narrowPeak K562 H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 33 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks on\ shortLabel K562 H3K36M3 Pk 1\ subGroups view=Peaks factor=H3K36ME3 cellType=t1K562 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneK562H3k36me3StdPkRep1\ type narrowPeak\ wgEncodeGisRnaPetK562PolysomePapClustersRep1 K562 poly pA+ 1 bed 6 + K562 polysome polyA+ clone-based RNA PET Clusters Rep 1 from ENCODE/GIS 2 33 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 polysome polyA+ clone-based RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel K562 poly pA+ 1\ subGroups view=v1Clusters cellType=aK562 cloned=Based localization=polysome rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562PolysomePapClustersRep1\ type bed 6 +\ wgEncodeSunyRipSeqK562T7tagSigRep2 K562 T7Tag 2 bigWig 0.000000 51895.449219 K562 T7Tag RIP-seq Signal Rep 2 from ENCODE/SUNY 2 33 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 T7Tag RIP-seq Signal Rep 2 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewSignal off\ shortLabel K562 T7Tag 2\ subGroups view=Signal factor=T7Tag cellType=t1K562 rep=rep2\ track wgEncodeSunyRipSeqK562T7tagSigRep2\ type bigWig 0.000000 51895.449219\ wgEncodeDukeAffyExonMcf7EstroSimpleSignalRep1V2 MCF-7 ESTRO 1 bigBed 6 + MCF-7 Estradiol 100 nM Exon array Signal Rep 1 from ENCODE/Duke 0 33 0 0 0 127 127 127 1 0 0 expression 1 longLabel MCF-7 Estradiol 100 nM Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel MCF-7 ESTRO 1\ subGroups cellType=t2MCF7 treatment=ESTRO rep=rep1\ track wgEncodeDukeAffyExonMcf7EstroSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeSydhHistoneNt2d1H3k27me3bUcdSig NT2-D1 H3K27me3 bigWig 1.000000 17024.000000 NT2D1 H3K27me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 33 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NT2D1 H3K27me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal on\ shortLabel NT2-D1 H3K27me3\ subGroups view=Signal factor=H3K27me3B cellType=cNT2D1 control=UCD treatment=NONE\ track wgEncodeSydhHistoneNt2d1H3k27me3bUcdSig\ type bigWig 1.000000 17024.000000\ pgHG00731 PUR father '731 pgSnp PUR Trio Father HG00731 (Complete Genomics) 0 33 128 64 0 191 159 127 0 0 0 varRep 1 color 128,64,0\ longLabel PUR Trio Father HG00731 (Complete Genomics)\ parent pgSnpCg\ shortLabel PUR father '731\ subGroups view=C_CG id=CA_PUR_731 type=SNP\ track pgHG00731\ gtexEqtlTissueSkinExposed skinExposed bed 9 + Expression QTL in Skin_Sun_Exposed_Lower_leg from GTEx V6 0 33 30 144 255 142 199 255 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 30,144,255\ idInUrlSql select gene from gtexEqtlTissueSkinExposed where name='%s'\ longLabel Expression QTL in Skin_Sun_Exposed_Lower_leg from GTEx V6\ parent gtexEqtlTissue on\ shortLabel skinExposed\ track gtexEqtlTissueSkinExposed\ Agilent_Human_Exon_V5_Regions SureSel. V5 T bigBed Agilent - SureSelect All Exon V5 Target Regions 0 33 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S04380110_Regions.bb\ color 120,94,240\ longLabel Agilent - SureSelect All Exon V5 Target Regions\ parent exomeProbesets off\ shortLabel SureSel. V5 T\ track Agilent_Human_Exon_V5_Regions\ type bigBed\ netEquCab2 Horse Net netAlign equCab2 chainEquCab2 Horse (Sep. 2007 (Broad/equCab2)) Alignment Net 1 34 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Horse (Sep. 2007 (Broad/equCab2)) Alignment Net\ otherDb equCab2\ parent placentalChainNetViewnet off\ shortLabel Horse Net\ subGroups view=net species=s096b clade=c05\ track netEquCab2\ type netAlign equCab2 chainEquCab2\ encTfChipPkENCFF890IRR A549 PHF8 narrowPeak Transcription Factor ChIP-seq Peaks of PHF8 in A549 from ENCODE 3 (ENCFF890IRR) 1 34 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of PHF8 in A549 from ENCODE 3 (ENCFF890IRR)\ parent encTfChipPk off\ shortLabel A549 PHF8\ subGroups cellType=A549 factor=PHF8\ track encTfChipPkENCFF890IRR\ wgEncodeOpenChromChipA549Pol2Sig A549 Pol2 DS bigWig 0.000000 1.908100 A549 Pol2 TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 34 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 Pol2 TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel A549 Pol2 DS\ subGroups treatment=AANONE view=SIG factor=POL2 cellType=t2A549\ track wgEncodeOpenChromChipA549Pol2Sig\ type bigWig 0.000000 1.908100\ wgEncodeUwDgfAoafPk AoAF Pk narrowPeak AoAF DNaseI DGF Peaks from ENCODE/UW 0 34 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoAF DNaseI DGF Peaks from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewPeaks off\ shortLabel AoAF Pk\ subGroups view=Peaks cellType=t3AOAF treatment=aNONE rep=rep1\ track wgEncodeUwDgfAoafPk\ type narrowPeak\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_ctss_rev AorticSmsToFgf2_03hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_reverse 0 34 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep1%20%28LK19%29.CNhs13345.12648-134H2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12648-134H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_03hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_tpm_rev AorticSmsToFgf2_03hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_reverse 1 34 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep1%20%28LK19%29.CNhs13345.12648-134H2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12648-134H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_03hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2\ urlLabel FANTOM5 Details:\ wgEncodeHaibRnaSeqBe2cAlnRep1 BE2_C 1 bam BE2_C RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 34 0 0 0 127 127 127 0 0 0 expression 1 longLabel BE2_C RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel BE2_C 1\ subGroups view=Alignments cellType=t3BE2C treatment=zNONE rep=rep1\ track wgEncodeHaibRnaSeqBe2cAlnRep1\ type bam\ wgEncodeHaibMethylRrbsBe2cHaibSitesRep2 BE2_C 2 bed 9 + BE2 C Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 34 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BE2 C Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel BE2_C 2\ subGroups cellType=t3BE2C obtainedBy=HAIB treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBe2cHaibSitesRep2\ type bed 9 +\ dhcHumDerDenAncFrameshiftCodingHighFreq FrShft HiF bigBed 4 + Modern Human Derived (HighFreq), Denisova Ancestral: Frameshift Coding 0 34 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (HighFreq), Denisova Ancestral: Frameshift Coding\ parent dhcHumDerDenAncEns\ shortLabel FrShft HiF\ subGroups view=Ens subset=FrameshiftCoding freq=HighFreq\ track dhcHumDerDenAncFrameshiftCodingHighFreq\ wgEncodeUwAffyExonArrayGm06990SimpleSignalRep2 GM06990 2 broadPeak GM06990 Exon array Signal Rep 2 from ENCODE/UW 0 34 0 0 0 127 127 127 0 0 0 expression 1 longLabel GM06990 Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel GM06990 2\ subGroups cellType=t3GM06990 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayGm06990SimpleSignalRep2\ type broadPeak\ wgEncodeAwgTfbsSydhGm12878Mazab85725IggmusUniPk GM12878 MAZ narrowPeak GM12878 TFBS Uniform Peaks of MAZ_(ab85725) from ENCODE/Stanford/Analysis 1 34 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of MAZ_(ab85725) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 MAZ\ subGroups tier=a10 cellType=a10GM12878 factor=MAZ lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Mazab85725IggmusUniPk\ wgEncodeAwgDnaseDukeGm19239UniPk GM19239 DNase narrowPeak GM19239 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 34 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM19239 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel GM19239 DNase\ subGroups tier=a30 cellType=GM19239\ track wgEncodeAwgDnaseDukeGm19239UniPk\ wgEncodeHaibTfbsGm12878Ebf1sc137065Pcr1xRawRep1 GM78 EBF1 PCR1 1 bigWig 0.108531 129.695007 GM12878 EBF1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 34 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 EBF1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 EBF1 PCR1 1\ subGroups view=RawSignal factor=EBF1SC137065 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Ebf1sc137065Pcr1xRawRep1\ type bigWig 0.108531 129.695007\ wgEncodeSydhTfbsGm12878JundStdSig GM78 JunD Std bigWig 0.000000 9181.599609 GM12878 JunD Standard ChIP-seq Signal from ENCODE/SYDH 2 34 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 JunD Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 JunD Std\ subGroups view=Signal factor=JUND cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878JundStdSig\ type bigWig 0.000000 9181.599609\ wgEncodeCshlLongRnaSeqGm12878NucleolusTotalAlnRep4 GM78 nlus tot A 4 bam GM12878 nucleolus total RNA-seq Alignments Rep 4 from ENCODE/CSHL 0 34 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleolus total RNA-seq Alignments Rep 4 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel GM78 nlus tot A 4\ subGroups view=Alignments cellType=t1GM12878 localization=NUCLEOLUS rnaExtract=TOTAL rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878NucleolusTotalAlnRep4\ type bam\ wgEncodeBroadHistoneH1hescEzh239875Pk H1-hESC EZH2 broadPeak H1-hESC EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 34 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC EZH2\ subGroups view=Peaks factor=EZH239875 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescEzh239875Pk\ type broadPeak\ wgEncodeCaltechRnaSeqH1hescR1x75dAlignsRep2V2 H1ES 1x75D A 2 bam H1-hESC single read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 34 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC single read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel H1ES 1x75D A 2\ subGroups view=Aligns cellType=t1H1HESC insertLength=ilNa readType=r1x75D rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR1x75dAlignsRep2V2\ type bam\ wgEncodeRikenCageH1hescCytosolPapTssHmm H1ES cyto pA+ bed 6 H1-hESC cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 34 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel H1ES cyto pA+\ subGroups view=TssHmm cellType=t1H1HESC localization=cytosol rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageH1hescCytosolPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapContigsV2 H1ES nucl TAP C bed 6 H1-hESC TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL 2 34 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel H1ES nucl TAP C\ subGroups view=Contigs cellType=t1H1HESC localization=NUCLEUS protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapContigsV2\ type bed 6\ wgEncodeHaibGenotypeHcpeRegionsRep2 HCPEpiC 2 bed 9 + HCPEpiC Copy number variants Replicate 2 from ENCODE/HAIB 0 34 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HCPEpiC Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HCPEpiC 2\ subGroups cellType=t3HCPEPIC obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeHcpeRegionsRep2\ type bed 9 +\ wgEncodeOpenChromDnaseHelas3Pk HeLaS3 Pk narrowPeak HeLa-S3 DNaseI HS Peaks from ENCODE/Duke 3 34 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel HeLaS3 Pk\ subGroups view=Peaks cellType=t2HELAS3 treatment=zNONE\ track wgEncodeOpenChromDnaseHelas3Pk\ type narrowPeak\ wgEncodeHaibMethyl450HepatoSitesRep1 Hepatocyte bed 9 Hepatocyte Methylation 450K Bead Array from ENCODE/HAIB 1 34 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Hepatocyte Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel Hepatocyte\ subGroups cellType=t3HEPATOCYTES obtainedBy=DUKE treatment=zNONE\ track wgEncodeHaibMethyl450HepatoSitesRep1\ type bed 9\ wgEncodeUwTfbsHepg2CtcfStdHotspotsRep2 HepG2 CTCF Ht 2 broadPeak HepG2 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 34 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HepG2 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t2HEPG2 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHepg2CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseHepg2HotspotsRep1 HepG2 Ht 1 broadPeak HepG2 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 34 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HepG2 Ht 1\ subGroups view=Hot cellType=t2HEPG2 rep=rep1 treatment=None\ track wgEncodeUwDnaseHepg2HotspotsRep1\ type broadPeak\ wgEncodeUwRepliSeqHepg2S3PctSignalRep1 HepG2 S3 1 bigWig 1.000000 100.000000 HepG2 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 34 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HepG2 S3 1\ subGroups view=v1PctSignal cellType=t2HEPG2 phase=p4S3 rep=rep1\ track wgEncodeUwRepliSeqHepg2S3PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeUwHistoneK562H3k36me3StdRawRep1 K562 H3K36M3 Sg 1 bigWig 1.000000 8569.000000 K562 H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 34 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig on\ shortLabel K562 H3K36M3 Sg 1\ subGroups view=zRSig factor=H3K36ME3 cellType=t1K562 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneK562H3k36me3StdRawRep1\ type bigWig 1.000000 8569.000000\ wgEncodeSunyRipSeqK562RipinputAlnRep1 K562 Input 1 bam K562 RIP-Input RIP-seq Alignments Rep 1 from ENCODE/SUNY 0 34 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 RIP-Input RIP-seq Alignments Rep 1 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewAlignments off\ shortLabel K562 Input 1\ subGroups view=Alignments factor=ripInput cellType=t1K562 rep=rep1\ track wgEncodeSunyRipSeqK562RipinputAlnRep1\ type bam\ wgEncodeGisRnaPetK562PolysomePapMinusRawSigRep1 K562 poly pA+ - 1 bigWig 1.000000 1469476.000000 K562 polysome polyA+ clone-based RNA PET Minus signal Rep 1 from ENCODE/GIS 2 34 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 polysome polyA+ clone-based RNA PET Minus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel K562 poly pA+ - 1\ subGroups view=v2MinusRawSignal cellType=aK562 cloned=Based localization=polysome rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562PolysomePapMinusRawSigRep1\ type bigWig 1.000000 1469476.000000\ wgEncodeOpenChromFaireMcf7Est10nm30mPk MCF-7 Est FAIR Pk narrowPeak MCF-7 Estradiol 10nM 30m FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 34 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 Estradiol 10nM 30m FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel MCF-7 Est FAIR Pk\ subGroups view=Peaks cellType=t2MCF7 treatment=EST10NM30M\ track wgEncodeOpenChromFaireMcf7Est10nm30mPk\ type narrowPeak\ wgEncodeDukeAffyExonMcf7EstroSimpleSignalRep2V2 MCF-7 ESTRO 2 bigBed 6 + MCF-7 Estradiol 100 nM Exon array Signal Rep 2 from ENCODE/Duke 0 34 0 0 0 127 127 127 1 0 0 expression 1 longLabel MCF-7 Estradiol 100 nM Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel MCF-7 ESTRO 2\ subGroups cellType=t2MCF7 treatment=ESTRO rep=rep2\ track wgEncodeDukeAffyExonMcf7EstroSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeSydhHistoneNt2d1H3k36me3bUcdPk NT2-D1 H3K36me3 narrowPeak NT2D1 H3K36me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 34 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2D1 H3K36me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks on\ shortLabel NT2-D1 H3K36me3\ subGroups view=Peaks factor=H3K36me3B cellType=cNT2D1 control=UCD treatment=NONE\ track wgEncodeSydhHistoneNt2d1H3k36me3bUcdPk\ type narrowPeak\ pgHG00731indel PUR HG00731 indel pgSnp PUR HG00731 (Father) indel (Complete Genomics) 0 34 0 0 0 127 127 127 0 0 0 varRep 1 longLabel PUR HG00731 (Father) indel (Complete Genomics)\ parent pgSnpCg\ shortLabel PUR HG00731 indel\ subGroups view=C_CG id=CA_PUR_731 type=Indel\ track pgHG00731indel\ gtexEqtlTissueSkinNotExposed skinNotExposed bed 9 + Expression QTL in Skin_Not_Sun_Exposed_Suprapubic from GTEx V6 0 34 58 95 205 156 175 230 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 58,95,205\ idInUrlSql select gene from gtexEqtlTissueSkinNotExposed where name='%s'\ longLabel Expression QTL in Skin_Not_Sun_Exposed_Suprapubic from GTEx V6\ parent gtexEqtlTissue on\ shortLabel skinNotExposed\ track gtexEqtlTissueSkinNotExposed\ Agilent_Human_Exon_V5_UTRs_Covered SureSel. V5+UTR P bigBed Agilent - SureSelect All Exon V5 + UTRs Covered by Probes 0 34 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S04380219_Covered.bb\ color 120,94,240\ longLabel Agilent - SureSelect All Exon V5 + UTRs Covered by Probes\ parent exomeProbesets off\ shortLabel SureSel. V5+UTR P\ track Agilent_Human_Exon_V5_UTRs_Covered\ type bigBed\ wgEncodeGencodeV46lift37 GENCODE V46lift37 genePred GENCODE lifted annotations from V46lift37 (Ensembl 112) 3 34.159 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 46lift37, May 2024) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The GENCODE V46 annotations on the GRCh38 (hg38) primary assembly\ were mapped to GRCh37 (hg19) using the process\ documented here.\

\

\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) was included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • If no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \ \ \

Downloads

\

GENCODE GFF3 and GTF files are available from the\ GENCODE release 46lift37 site.

\ \

Release Notes

\

\ GENCODE version 46lift37 corresponds to Ensembl 112.

\

See also: The GENCODE Project\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel GENCODE lifted annotations from V46lift37 (Ensembl 112)\ priority 34.159\ shortLabel GENCODE V46lift37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes bPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV46lift37\ type genePred\ visibility pack\ wgEncodeGencodeVersion 46lift37\ wgEncodeGencodeV46lift37ViewGenes Genes genePred GENCODE lifted annotations from V46lift37 (Ensembl 112) 3 34.159 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,annotation_in_progress,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,confirm_experimentally,dotter_confirmed,downstream_ATG,Ensembl_canonical,EnsEMBL_merge_exception,exp_conf,fragmented_locus,fragmented_mixed_strand_locus,GENCODE_Primary,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,PAR,polymorphic_pseudogene_no_stop,precursor_RNA,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,Selenoprotein,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA 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supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV46lift37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV46lift37\ longLabel GENCODE lifted annotations from V46lift37 (Ensembl 112)\ parent wgEncodeGencodeV46lift37\ shortLabel Genes\ track wgEncodeGencodeV46lift37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV45lift37 GENCODE V45lift37 genePred GENCODE lifted annotations from V45lift37 (Ensembl 111) 0 34.16 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 45lift37, Jan 2024) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The GENCODE V45 annotations on the GRCh38 (hg38) primary assembly\ were mapped to GRCh37 (hg19) using the process\ documented here.\

\

\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) was included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • If no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \ \ \

Downloads

\

GENCODE GFF3 and GTF files are available from the\ GENCODE release 45lift37 site.

\ \

Release Notes

\

\ GENCODE version 45lift37 corresponds to Ensembl 111.

\

See also: The GENCODE Project\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel GENCODE lifted annotations from V45lift37 (Ensembl 111)\ priority 34.160\ shortLabel GENCODE V45lift37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes bPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV45lift37\ type genePred\ visibility hide\ wgEncodeGencodeVersion 45lift37\ wgEncodeGencodeV45lift37ViewGenes Genes genePred GENCODE lifted annotations from V45lift37 (Ensembl 111) 3 34.16 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV45lift37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV45lift37\ longLabel GENCODE lifted annotations from V45lift37 (Ensembl 111)\ parent wgEncodeGencodeV45lift37\ shortLabel Genes\ track wgEncodeGencodeV45lift37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV44lift37 GENCODE V44lift37 genePred GENCODE lifted annotations from V44lift37 (Ensembl 110) 0 34.161 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 44lift37, July 2023) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The GENCODE V44 annotations on the GRCh38 (hg38) primary assembly\ were mapped to GRCh37 (hg19) using the process\ documented here.\

\

\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) was included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • If no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \ \ \

Downloads

\

GENCODE GFF3 and GTF files are available from the\ GENCODE release 44lift37 site.

\ \

Release Notes

\

\ GENCODE version 44lift37 corresponds to Ensembl 110.

\

See also: The GENCODE Project\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel GENCODE lifted annotations from V44lift37 (Ensembl 110)\ priority 34.161\ shortLabel GENCODE V44lift37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes bPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV44lift37\ type genePred\ visibility hide\ wgEncodeGencodeVersion 44lift37\ wgEncodeGencodeV44lift37ViewGenes Genes genePred GENCODE lifted annotations from V44lift37 (Ensembl 110) 3 34.161 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV44lift37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV44lift37\ longLabel GENCODE lifted annotations from V44lift37 (Ensembl 110)\ parent wgEncodeGencodeV44lift37\ shortLabel Genes\ track wgEncodeGencodeV44lift37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV43lift37 GENCODE V43lift37 genePred GENCODE lifted annotations from V43lift37 (Ensembl 109) 0 34.162 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 43lift37, Feb 2023) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The GENCODE V43 annotations on the GRCh38 (hg38) primary assembly\ were mapped to GRCh37 (hg19) using the process\ documented here.\

\

\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) was included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • If no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \ \ \

Downloads

\

GENCODE GFF3 and GTF files are available from the\ GENCODE release 43lift37 site.

\ \

Release Notes

\

\ GENCODE version 43lift37 corresponds to Ensembl 109.

\

See also: The GENCODE Project\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel GENCODE lifted annotations from V43lift37 (Ensembl 109)\ priority 34.162\ shortLabel GENCODE V43lift37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes bPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV43lift37\ type genePred\ visibility hide\ wgEncodeGencodeVersion 43lift37\ wgEncodeGencodeV43lift37ViewGenes Genes genePred GENCODE lifted annotations from V43lift37 (Ensembl 109) 3 34.162 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV43lift37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV43lift37\ longLabel GENCODE lifted annotations from V43lift37 (Ensembl 109)\ parent wgEncodeGencodeV43lift37\ shortLabel Genes\ track wgEncodeGencodeV43lift37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV42lift37 GENCODE V42lift37 genePred GENCODE lifted annotations from V42lift37 (Ensembl 108) 0 34.163 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 42lift37, Oct 2022) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The GENCODE V42 annotations on the GRCh38 (hg38) primary assembly\ were mapped to GRCh37 (hg19) using the process\ documented here.\

\

\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) was included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • If no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \ \ \

Downloads

\

GENCODE GFF3 and GTF files are available from the\ GENCODE release 42lift37 site.

\ \

Release Notes

\

\ GENCODE version 42lift37 corresponds to Ensembl 108.

\

See also: The GENCODE Project\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel GENCODE lifted annotations from V42lift37 (Ensembl 108)\ priority 34.163\ shortLabel GENCODE V42lift37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes bPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV42lift37\ type genePred\ visibility hide\ wgEncodeGencodeVersion 42lift37\ wgEncodeGencodeV42lift37ViewGenes Genes genePred GENCODE lifted annotations from V42lift37 (Ensembl 108) 3 34.163 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV42lift37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV42lift37\ longLabel GENCODE lifted annotations from V42lift37 (Ensembl 108)\ parent wgEncodeGencodeV42lift37\ shortLabel Genes\ track wgEncodeGencodeV42lift37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV41lift37 GENCODE V41lift37 genePred GENCODE lifted annotations from V41lift37 (Ensembl 107) 0 34.164 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 41lift37, July 2022) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The GENCODE V41 annotations on the GRCh38 (hg38) primary assembly\ were mapped to GRCh37 (hg19) using the process\ documented here.\

\

\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) was included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • If no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \ \ \

Downloads

\

GENCODE GFF3 and GTF files are available from the\ GENCODE release 41lift37 site.

\ \

Release Notes

\

\ GENCODE version 41lift37 corresponds to Ensembl 107.

\

See also: The GENCODE Project\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel GENCODE lifted annotations from V41lift37 (Ensembl 107)\ priority 34.164\ shortLabel GENCODE V41lift37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV41lift37\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV41lift37\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV41lift37\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV41lift37\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV41lift37\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV41lift37\ wgEncodeGencodePdb wgEncodeGencodePdbV41lift37\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV41lift37\ wgEncodeGencodePubMed wgEncodeGencodePubMedV41lift37\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV41lift37\ wgEncodeGencodeTag wgEncodeGencodeTagV41lift37\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV41lift37\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV41lift37\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV41lift37\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV41lift37\ wgEncodeGencodeVersion 41lift37\ wgEncodeGencodeV41lift37ViewGenes Genes genePred GENCODE lifted annotations from V41lift37 (Ensembl 107) 3 34.164 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_LoF,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_LoF,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV41lift37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV41lift37\ longLabel GENCODE lifted annotations from V41lift37 (Ensembl 107)\ parent wgEncodeGencodeV41lift37\ shortLabel Genes\ track wgEncodeGencodeV41lift37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV40lift37 GENCODE V40lift37 genePred GENCODE lifted annotations from V40lift37 (Ensembl 106) 0 34.165 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 40lift37, Feb 2022) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The GENCODE V40 annotations on the GRCh38 (hg38) primary assembly\ were mapped to GRCh37 (hg19) using the process\ documented here.\

\

\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) was included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • If no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \ \ \

Downloads

\

GENCODE GFF3 and GTF files are available from the\ GENCODE release 40lift37 site.

\ \

Release Notes

\

\ GENCODE version 40lift37 corresponds to Ensembl 106.

\

See also: The GENCODE Project\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel GENCODE lifted annotations from V40lift37 (Ensembl 106)\ priority 34.165\ shortLabel GENCODE V40lift37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV40lift37\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV40lift37\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV40lift37\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV40lift37\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV40lift37\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV40lift37\ wgEncodeGencodePdb wgEncodeGencodePdbV40lift37\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV40lift37\ wgEncodeGencodePubMed wgEncodeGencodePubMedV40lift37\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV40lift37\ wgEncodeGencodeTag wgEncodeGencodeTagV40lift37\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV40lift37\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV40lift37\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV40lift37\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV40lift37\ wgEncodeGencodeVersion 40lift37\ wgEncodeGencodeV40lift37ViewGenes Genes genePred GENCODE lifted annotations from V40lift37 (Ensembl 106) 3 34.165 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV40lift37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV40lift37\ longLabel GENCODE lifted annotations from V40lift37 (Ensembl 106)\ parent wgEncodeGencodeV40lift37\ shortLabel Genes\ track wgEncodeGencodeV40lift37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV39lift37 GENCODE V39lift37 genePred GENCODE lifted annotations from V39lift37 (Ensembl 105) 0 34.166 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 39lift37, Oct 2021) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The GENCODE V39 annotations on the GRCh38 (hg38) primary assembly\ were mapped to GRCh37 (hg19) using the process\ documented here.\

\

\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) was included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • If no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \ \ \

Downloads

\

GENCODE GFF3 and GTF files are available from the\ GENCODE release 39lift37 site.

\ \

Release Notes

\

\ GENCODE version 39lift37 corresponds to Ensembl 105.

\

See also: The GENCODE Project\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel GENCODE lifted annotations from V39lift37 (Ensembl 105)\ priority 34.166\ shortLabel GENCODE V39lift37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV39lift37\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV39lift37\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV39lift37\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV39lift37\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV39lift37\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV39lift37\ wgEncodeGencodePdb wgEncodeGencodePdbV39lift37\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV39lift37\ wgEncodeGencodePubMed wgEncodeGencodePubMedV39lift37\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV39lift37\ wgEncodeGencodeTag wgEncodeGencodeTagV39lift37\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV39lift37\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV39lift37\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV39lift37\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV39lift37\ wgEncodeGencodeVersion 39lift37\ wgEncodeGencodeV39lift37ViewGenes Genes genePred GENCODE lifted annotations from V39lift37 (Ensembl 105) 3 34.166 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV39lift37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV39lift37\ longLabel GENCODE lifted annotations from V39lift37 (Ensembl 105)\ parent wgEncodeGencodeV39lift37\ shortLabel Genes\ track wgEncodeGencodeV39lift37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV38lift37 GENCODE V38lift37 genePred GENCODE lifted annotations from V38lift37 (Ensembl 104) 0 34.167 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 38lift37, May 2021) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The GENCODE V38 annotations on the GRCh38 (hg38) primary assembly\ were mapped to GRCh37 (hg19) using the process\ documented here.\

\

\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) was included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • If no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \ \ \

Downloads

\

GENCODE GFF3 and GTF files are available from the\ GENCODE release 38lift37 site.

\ \

Release Notes

\

\ GENCODE version 38lift37 corresponds to Ensembl 104.

\

See also: The GENCODE Project\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel GENCODE lifted annotations from V38lift37 (Ensembl 104)\ priority 34.167\ shortLabel GENCODE V38lift37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV38lift37\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV38lift37\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV38lift37\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV38lift37\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV38lift37\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV38lift37\ wgEncodeGencodePdb wgEncodeGencodePdbV38lift37\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV38lift37\ wgEncodeGencodePubMed wgEncodeGencodePubMedV38lift37\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV38lift37\ wgEncodeGencodeTag wgEncodeGencodeTagV38lift37\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV38lift37\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV38lift37\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV38lift37\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV38lift37\ wgEncodeGencodeVersion 38lift37\ wgEncodeGencodeV38lift37ViewGenes Genes genePred GENCODE lifted annotations from V38lift37 (Ensembl 104) 3 34.167 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV38lift37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV38lift37\ longLabel GENCODE lifted annotations from V38lift37 (Ensembl 104)\ parent wgEncodeGencodeV38lift37\ shortLabel Genes\ track wgEncodeGencodeV38lift37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV37lift37 GENCODE V37lift37 genePred GENCODE lifted annotations from V37lift37 (Ensembl 103) 0 34.168 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 37lift37, Feb 2021) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The GENCODE V37 annotations on the GRCh38 (hg38) primary assembly\ were mapped to GRCh37 (hg19) using the process\ documented here.\

\

\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) was included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • If no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \ \ \

Downloads

\

GENCODE GFF3 and GTF files are available from the\ GENCODE release 37lift37 site.

\ \

Release Notes

\

\ GENCODE version 37lift37 corresponds to Ensembl 103.

\

See also: The GENCODE Project\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel GENCODE lifted annotations from V37lift37 (Ensembl 103)\ priority 34.168\ shortLabel GENCODE V37lift37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV37lift37\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV37lift37\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV37lift37\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV37lift37\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV37lift37\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV37lift37\ wgEncodeGencodePdb wgEncodeGencodePdbV37lift37\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV37lift37\ wgEncodeGencodePubMed wgEncodeGencodePubMedV37lift37\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV37lift37\ wgEncodeGencodeTag wgEncodeGencodeTagV37lift37\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV37lift37\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV37lift37\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV37lift37\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV37lift37\ wgEncodeGencodeVersion 37lift37\ wgEncodeGencodeV37lift37ViewGenes Genes genePred GENCODE lifted annotations from V37lift37 (Ensembl 103) 3 34.168 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV37lift37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV37lift37\ longLabel GENCODE lifted annotations from V37lift37 (Ensembl 103)\ parent wgEncodeGencodeV37lift37\ shortLabel Genes\ track wgEncodeGencodeV37lift37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV36lift37 GENCODE V36lift37 genePred GENCODE lifted annotations from V36lift37 (Ensembl 102) 0 34.169 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 36lift37, Nov 2020) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The GENCODE V36 annotations on the GRCh38 (hg38) primary assembly\ were mapped to GRCh37 (hg19) using the process\ documented here.\

\

\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) was included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • If no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \ \ \

Downloads

\

GENCODE GFF3 and GTF files are available from the\ GENCODE release 36lift37 site.

\ \

Release Notes

\

\ GENCODE version 36lift37 corresponds to Ensembl 102.

\

See also: The GENCODE Project\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel GENCODE lifted annotations from V36lift37 (Ensembl 102)\ priority 34.169\ shortLabel GENCODE V36lift37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV36lift37\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV36lift37\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV36lift37\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV36lift37\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV36lift37\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV36lift37\ wgEncodeGencodePdb wgEncodeGencodePdbV36lift37\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV36lift37\ wgEncodeGencodePubMed wgEncodeGencodePubMedV36lift37\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV36lift37\ wgEncodeGencodeTag wgEncodeGencodeTagV36lift37\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV36lift37\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV36lift37\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV36lift37\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV36lift37\ wgEncodeGencodeVersion 36lift37\ wgEncodeGencodeV36lift37ViewGenes Genes genePred GENCODE lifted annotations from V36lift37 (Ensembl 102) 3 34.169 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV36lift37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV36lift37\ longLabel GENCODE lifted annotations from V36lift37 (Ensembl 102)\ parent wgEncodeGencodeV36lift37\ shortLabel Genes\ track wgEncodeGencodeV36lift37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV35lift37 GENCODE V35lift37 genePred GENCODE lifted annotations from V35lift37 (Ensembl 101) 0 34.17 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 35lift37, June 2020) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The GENCODE V35 annotations on the GRCh38 (hg38) primary assembly\ were mapped to GRCh37 (hg19) using the process\ documented here.\

\

\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) was included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • If no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \ \ \

Downloads

\

GENCODE GFF3 and GTF files are available from the\ GENCODE release 35lift37 site.

\ \

Release Notes

\

\ GENCODE version 35lift37 corresponds to Ensembl 101.

\

See also: The GENCODE Project\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel GENCODE lifted annotations from V35lift37 (Ensembl 101)\ priority 34.170\ shortLabel GENCODE V35lift37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV35lift37\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV35lift37\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV35lift37\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV35lift37\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV35lift37\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV35lift37\ wgEncodeGencodePdb wgEncodeGencodePdbV35lift37\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV35lift37\ wgEncodeGencodePubMed wgEncodeGencodePubMedV35lift37\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV35lift37\ wgEncodeGencodeTag wgEncodeGencodeTagV35lift37\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV35lift37\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV35lift37\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV35lift37\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV35lift37\ wgEncodeGencodeVersion 35lift37\ wgEncodeGencodeV35lift37ViewGenes Genes genePred GENCODE lifted annotations from V35lift37 (Ensembl 101) 3 34.17 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV35lift37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV35lift37\ longLabel GENCODE lifted annotations from V35lift37 (Ensembl 101)\ parent wgEncodeGencodeV35lift37\ shortLabel Genes\ track wgEncodeGencodeV35lift37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV34lift37 GENCODE V34lift37 genePred GENCODE lifted annotations from V34lift37 (Ensembl 100) 0 34.171 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 34lift37, April 2020) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The GENCODE V34 annotations on the GRCh38 (hg38) primary assembly\ were mapped to GRCh37 (hg19) using the process\ documented here.\

\

\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) was included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • If no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \ \ \

Downloads

\

GENCODE GFF3 and GTF files are available from the\ GENCODE release 34lift37 site.

\ \

Release Notes

\

\ GENCODE version 34lift37 corresponds to Ensembl 100.

\

See also: The GENCODE Project\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel GENCODE lifted annotations from V34lift37 (Ensembl 100)\ priority 34.171\ shortLabel GENCODE V34lift37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV34lift37\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV34lift37\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV34lift37\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV34lift37\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV34lift37\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV34lift37\ wgEncodeGencodePdb wgEncodeGencodePdbV34lift37\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV34lift37\ wgEncodeGencodePubMed wgEncodeGencodePubMedV34lift37\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV34lift37\ wgEncodeGencodeTag wgEncodeGencodeTagV34lift37\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV34lift37\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV34lift37\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV34lift37\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV34lift37\ wgEncodeGencodeVersion 34lift37\ wgEncodeGencodeV34lift37ViewGenes Genes genePred GENCODE lifted annotations from V34lift37 (Ensembl 100) 3 34.171 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV34lift37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV34lift37\ longLabel GENCODE lifted annotations from V34lift37 (Ensembl 100)\ parent wgEncodeGencodeV34lift37\ shortLabel Genes\ track wgEncodeGencodeV34lift37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV33lift37 GENCODE V33lift37 genePred GENCODE lifted annotations from V33lift37 (Ensembl 99) 0 34.172 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 33lift37, Jan 2020) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The GENCODE V33 annotations on the GRCh38 (hg38) primary assembly\ were mapped to GRCh37 (hg19) using the process\ documented here.\

\

\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) was included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • If no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \ \ \

Downloads

\

GENCODE GFF3 and GTF files are available from the\ GENCODE release 33lift37 site.

\ \

Release Notes

\

\ GENCODE version 33lift37 corresponds to Ensembl 99.

\

See also: The GENCODE Project\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel GENCODE lifted annotations from V33lift37 (Ensembl 99)\ priority 34.172\ shortLabel GENCODE V33lift37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV33lift37\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV33lift37\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV33lift37\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV33lift37\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV33lift37\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV33lift37\ wgEncodeGencodePdb wgEncodeGencodePdbV33lift37\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV33lift37\ wgEncodeGencodePubMed wgEncodeGencodePubMedV33lift37\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV33lift37\ wgEncodeGencodeTag wgEncodeGencodeTagV33lift37\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV33lift37\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV33lift37\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV33lift37\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV33lift37\ wgEncodeGencodeVersion 33lift37\ wgEncodeGencodeV33lift37ViewGenes Genes genePred GENCODE lifted annotations from V33lift37 (Ensembl 99) 3 34.172 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV33lift37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV33lift37\ longLabel GENCODE lifted annotations from V33lift37 (Ensembl 99)\ parent wgEncodeGencodeV33lift37\ shortLabel Genes\ track wgEncodeGencodeV33lift37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV31lift37 GENCODE V31lift37 genePred GENCODE lifted annotations from V31lift37 (Ensembl 97) 0 34.174 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 31lift37, June 2019) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The GENCODE V31 annotations on the GRCh38 (hg38) primary assembly\ were mapped to GRCh37 (hg19) using the process\ documented here.\

\

\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) was included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • If no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \ \ \

Downloads

\

GENCODE GFF3 and GTF files are available from the\ GENCODE release 31lift37 site.

\ \

Release Notes

\

\ GENCODE version 31lift37 corresponds to Ensembl 97.

\

See also: The GENCODE Project\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel GENCODE lifted annotations from V31lift37 (Ensembl 97)\ priority 34.174\ shortLabel GENCODE V31lift37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV31lift37\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV31lift37\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV31lift37\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV31lift37\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV31lift37\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV31lift37\ wgEncodeGencodePdb wgEncodeGencodePdbV31lift37\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV31lift37\ wgEncodeGencodePubMed wgEncodeGencodePubMedV31lift37\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV31lift37\ wgEncodeGencodeTag wgEncodeGencodeTagV31lift37\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV31lift37\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV31lift37\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV31lift37\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV31lift37\ wgEncodeGencodeVersion 31lift37\ wgEncodeGencodeV31lift37ViewGenes Genes genePred GENCODE lifted annotations from V31lift37 (Ensembl 97) 3 34.174 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,rRNA_pseudogene,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV31lift37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV31lift37\ longLabel GENCODE lifted annotations from V31lift37 (Ensembl 97)\ parent wgEncodeGencodeV31lift37\ shortLabel Genes\ track wgEncodeGencodeV31lift37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV28lift37 GENCODE V28lift37 genePred GENCODE lifted annotations from V28lift37 (Ensembl 92) 0 34.177 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 28lift37, Apr 2018) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The GENCODE V28 annotations on the GRCh38 (hg38) primary assembly\ were mapped to GRCh37 (hg19) using the process\ documented here.\

\

\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) was included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • If no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \ \ \

Downloads

\ GENCODE GFF3 and GTF files are available from the\ GENCODE release 28lift37 site.\ \

Release Notes

\

\ GENCODE version 28lift37 corresponds to Ensembl 92.

\

See also: The GENCODE Project\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel GENCODE lifted annotations from V28lift37 (Ensembl 92)\ priority 34.177\ shortLabel GENCODE V28lift37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV28lift37\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV28lift37\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV28lift37\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV28lift37\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV28lift37\ wgEncodeGencodePdb wgEncodeGencodePdbV28lift37\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV28lift37\ wgEncodeGencodePubMed wgEncodeGencodePubMedV28lift37\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV28lift37\ wgEncodeGencodeTag wgEncodeGencodeTagV28lift37\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV28lift37\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV28lift37\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV28lift37\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV28lift37\ wgEncodeGencodeVersion 28lift37\ wgEncodeGencodeV28lift37ViewGenes Genes genePred GENCODE lifted annotations from V28lift37 (Ensembl 92) 3 34.177 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,orphan,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,orphan,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV28lift37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV28lift37\ longLabel GENCODE lifted annotations from V28lift37 (Ensembl 92)\ parent wgEncodeGencodeV28lift37\ shortLabel Genes\ track wgEncodeGencodeV28lift37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV27lift37 GENCODE Gene V27lift37 genePred Gene Annotations from GENCODE Version 27lift37 0 34.178 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 27lift37, August 2017) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The GENCODE V27 annotations on the GRCh38 (hg38) primary assembly\ were mapped to GRCh37 (hg19) using the process\ documented here.\

\

\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) was included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • If no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \ \ \

Downloads

\ GENCODE GFF3 and GTF files are available from the\ GENCODE release 27lift37 site.\ \

Release Notes

\

\ GENCODE version 27lift37 corresponds to Ensembl 90.

\

See also: The GENCODE Project\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

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tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_candidate,appris_candidate_longest,appris_principal,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,pseudo_consens,readthrough_transcript,retained_intron_CDS,retained_intron_final,retained_intron_first,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,sequence_error,upstream_ATG,upstream_uORF 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tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,pseudo_consens,readthrough_transcript,retained_intron_CDS,retained_intron_final,retained_intron_first,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref 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Description

\

\ The GENCODE Genes track (version 24lift37, December 2015) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project\ and mapped from GRCh38 to GRCh37.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The annotation was carried out on genome assembly GRCh38 (hg38) and then\ the primary assembly was mapped to GRCh37 (hg19) using the process\ described documented here.\

\

\ As of GENCODE Version 11, Ensembl and GENCODE have converged. The gene\ annotations in the GENCODE comprehensive set are the same as the corresponding\ Ensembl release.\

\

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\ \
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • It no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in humans. Human transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • human leukocyte antigen (HLA) transcript\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

\
    \
  • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
  • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
  • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and there more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
  • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with a distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
  • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
  • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
  • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
\ \

Downloads

\ GENCODE GFF3 and GTF files are available from the\ GENCODE release 24 (mapped to GRCh37) site.\ \

Verification

\ \

\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

\
    \ \
  • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
    • \
  • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
    • \
  • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
    • \
\

See Harrow et al. (2006) for information on verification\ techniques.\

\ \

Release Notes

\

\ GENCODE version 23 corresponds to Ensembl 83.

\ \

See also: The GENCODE Project\

\ \

Credits

\

This GENCODE release is the result of a collaborative effort among\ the following laboratories: (contact: \ GENCODE at the Sanger Institute)\ \

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Lab/InstitutionContributors
GENCODE Principal InvestigatorJennifer Harrow
GENCODE Co-Principal InvestigatorTim Hubbard
HAVANA manual annotation group, Wellcome Trust Sanger Insitute (WTSI), Hinxton, UKTimothy Cutts, Bronwen Aken, James Gilbert, Jyoti Choudhary, Ed Griffiths, Jose Manuel Gonzalez, Electra Tapanari, Daniel Barrell, Adam Frankish, Andrew Berry, Alexandra Bignell, Veronika Boychenko, Claire Davidson, Gloria Despacio-Reyes, Mike Kay, Deepa Manthravadi, Gaurab Mukherjee, Catherine Snow, Gemma Barson, Matt Hardy, Joanne Howes
Centre de Regulació Genòmica (CRG), Barcelona, SpainRoderic Guigó, Julien Lagarde, Barbara Uszczyńska
Genome Bioinformatics, University of California Santa Cruz (UCSC), USADavid Haussler, Mark Diekhans, Benedict Paten, Joel Armstrong
Computer Science and Artificial Intelligence Lab,Broad Institute of MIT and Harvard, USAManolis Kellis, Irwin Jungreis
Computational Biology and Bioinformatics, Yale University (Yale), USAMark Gerstein, Suganthi Balasubramanian, Ekta Khurana, Cristina Sisu, Baikang Pei, Yan Zhang, Mihali Felipe
Center for Integrative Genomics,University of Lausanne, SwitzerlandAlexandre Reymond, Cedric Howald, Anne-Maud Ferreira, Jacqueline Chrast
Structural Computational Biology Group, Centro Nacional de Investigaciones Oncologicas (CNIO), Madrid, SpainAlfonso Valencia, Michael Tress, José Manuel Rodríguez, Victor de la Torre
Former members of the GENCODE projectFelix Kokocinski, Toby Hunt, Gary Saunders, Sarah Grubb, Thomas Derrien, Andrea Tanzer, Gang Fang, Mihali Felipe, Michael Brent, Randall Brown, Jeltje van Baren, Stephen Searle, Rachel Harte
\ \

References

\ \

\ Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa\ A, Searle S et al.\ \ GENCODE: the reference human genome annotation for The ENCODE Project.\ Genome Res. 2012 Sep;22(9):1760-74.\ PMID: 22955987; PMC: PMC3431492\

\ \

\ Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R,\ Swarbreck D et al.\ \ GENCODE: producing a reference annotation for ENCODE.\ Genome Biol. 2006;7 Suppl 1:S4.1-9.\ PMID: 16925838; PMC: PMC1810553\

\ \

A full list of GENCODE publications are available\ at The GENCODE Project\ web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel Gene Annotations from GENCODE Version 24lift37\ priority 34.181\ shortLabel GENCODE Gene V24lift37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV24lift37\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV24lift37\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV24lift37\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV24lift37\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV24lift37\ wgEncodeGencodePdb wgEncodeGencodePdbV24lift37\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV24lift37\ wgEncodeGencodePubMed wgEncodeGencodePubMedV24lift37\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV24lift37\ wgEncodeGencodeTag wgEncodeGencodeTagV24lift37\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV24lift37\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV24lift37\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV24lift37\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV24lift37\ wgEncodeGencodeVersion 24lift37\ wgEncodeGencodeV24lift37ViewGenes Genes genePred Gene Annotations from GENCODE Version 24lift37 3 34.181 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,CCDS,cds_end_NF,cds_start_NF,downstream_ATG,exp_conf,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,CCDS,cds_end_NF,cds_start_NF,downstream_ATG,exp_conf,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV24lift37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV24lift37\ longLabel Gene Annotations from GENCODE Version 24lift37\ parent wgEncodeGencodeV24lift37\ shortLabel Genes\ track wgEncodeGencodeV24lift37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV19View2Way 2-Way genePred Gene Annotations from GENCODE Version 19 0 34.186 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel Gene Annotations from GENCODE Version 19\ parent wgEncodeGencodeV19\ shortLabel 2-Way\ track wgEncodeGencodeV19View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV19 GENCODE Genes V19 genePred Gene Annotations from GENCODE Version 19 0 34.186 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 19, December 2013) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The annotation was carried out on genome assembly GRCh37 (hg19).\

\

\ As of GENCODE Version 11, Ensembl and GENCODE have converged. The gene\ annotations in the GENCODE comprehensive set are the same as the corresponding\ Ensembl release. UCSC will continue to provide a separate Ensembl track on\ Human in the same format as the Ensembl tracks on other organisms.\

\

\ NOTE: Due to the UCSC Genome Browser using the NC_001807 mitochondrial\ genome sequence (chrM) and GENCODE annotating the NC_012920 mitochondrial\ sequence, the GENCODE mitochondrial annotations have been lifted to NC_001807\ coordinates in the UCSC Genome Browser. The original annotations with\ NC_012920 coordinates are available for download in the GENCODE GTF files.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \
\
2-way
\
\
    \
  • GENCODE 2-way Pseudogenes contains pseudogenes predicted by both the Yale\ Pseudopipe and UCSC Retrofinder pipelines. \ The set was derived by looking for 50 base pairs\ of overlap between pseudogenes derived from both sets based on their \ chromosomal coordinates. When multiple Pseudopipe\ predictions map to a single Retrofinder prediction, only one match is kept\ for the 2-way consensus set.\
    • \
\ \
\
PolyA
\
\
    \
  • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
    • \
\ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
  • all 2-way pseudogenes\
  • all polyA annotations\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • It no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in humans. Human transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • human leukocyte antigen (HLA) transcript\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

Downloads

\ GENCODE GTF files are available from the\ GENCODE release 19 site.\ \

Verification

\ \

\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

\
    \ \
  • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
    • \
  • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
    • \
  • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
    • \
\

See Harrow et al. (2006) for information on verification\ techniques.\

\ \

Release Notes

\

\ GENCODE version 19 corresponds to Ensembl 74 and Vega 54.

\ \

See also: The GENCODE Project\

\ \

Credits

\

This GENCODE release is the result of a collaborative effort among\ the following laboratories: (contact: \ GENCODE at the Sanger Institute)\ \

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Lab/InstitutionContributors
GENCODE Principal InvestigatorTim Hubbard
HAVANA manual annotation group, Wellcome Trust Sanger Insitute (WTSI), Hinxton, UKJennifer Harrow, Timothy Cutts, Bronwen Aken, James Gilbert, Jyoti Choudhary, Ed Griffiths, Jose Manuel Gonzalez, Electra Tapanari, Daniel Barrell, Adam Frankish, Andrew Berry, Alexandra Bignell, Veronika Boychenko, Claire Davidson, Gloria Despacio-Reyes, Mike Kay, Deepa Manthravadi, Gaurab Mukherjee, Catherine Snow, Gemma Barson, Matt Hardy, Joanne Howes
Centre de Regulació Genòmica (CRG), Barcelona, SpainRoderic Guigó, Julien Lagarde, Barbara Uszczyńska
Genome Bioinformatics, University of California Santa Cruz (UCSC), USADavid Haussler, Rachel Harte, Mark Diekhans, Benedict Paten, Joel Armstrong
Computer Science and Artificial Intelligence Lab,Broad Institute of MIT and Harvard, USAManolis Kellis, Irwin Jungreis
Computational Biology and Bioinformatics, Yale University (Yale), USAMark Gerstein, Suganthi Balasubramanian, Ekta Khurana, Cristina Sisu, Baikang Pei, Yan Zhang, Mihali Felipe
Center for Integrative Genomics,University of Lausanne, SwitzerlandAlexandre Reymond, Cedric Howald, Anne-Maud Ferreira, Jacqueline Chrast
Structural Computational Biology Group, Centro Nacional de Investigaciones Oncologicas (CNIO), Madrid, SpainAlfonso Valencia, Michael Tress, José Manuel Rodríguez, Victor de la Torre
Former members of the GENCODE projectFelix Kokocinski, Toby Hunt, Gary Saunders, Sarah Grubb, Thomas Derrien, Andrea Tanzer, Gang Fang, Mihali Felipe, Michael Brent, Randall Brown, Jeltje van Baren, Stephen Searle
\ \

References

\ \

\ Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa\ A, Searle S et al.\ \ GENCODE: the reference human genome annotation for The ENCODE Project.\ Genome Res. 2012 Sep;22(9):1760-74.\ PMID: 22955987; PMC: PMC3431492\

\ \

\ Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R,\ Swarbreck D et al.\ \ GENCODE: producing a reference annotation for ENCODE.\ Genome Biol. 2006;7 Suppl 1:S4.1-9.\ PMID: 16925838; PMC: PMC1810553\

\ \

A full list of GENCODE publications are available\ at The GENCODE Project\ web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel Gene Annotations from GENCODE Version 19\ priority 34.186\ shortLabel GENCODE Genes V19\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV19\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV19\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV19\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV19\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV19\ wgEncodeGencodePdb wgEncodeGencodePdbV19\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV19\ wgEncodeGencodePubMed wgEncodeGencodePubMedV19\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV19\ wgEncodeGencodeTag wgEncodeGencodeTagV19\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV19\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV19\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV19\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV19\ wgEncodeGencodeVersion 19\ wgEncodeGencodeV19ViewGenes Genes genePred Gene Annotations from GENCODE Version 19 3 34.186 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,ambiguous_orf,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,miRNA,misc_RNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_candidate,appris_candidate_longest,appris_principal,basic,CCDS,cds_end_NF,cds_start_NF,downstream_ATG,exp_conf,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,ambiguous_orf,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,retrotransposed,rRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_candidate,appris_candidate_longest,appris_principal,basic,CCDS,cds_end_NF,cds_start_NF,downstream_ATG,exp_conf,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV19 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV19\ longLabel Gene Annotations from GENCODE Version 19\ parent wgEncodeGencodeV19\ shortLabel Genes\ track wgEncodeGencodeV19ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV19ViewPolya PolyA genePred Gene Annotations from GENCODE Version 19 0 34.186 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel Gene Annotations from GENCODE Version 19\ parent wgEncodeGencodeV19\ shortLabel PolyA\ track wgEncodeGencodeV19ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV17View2Way 2-Way genePred Gene Annotations from ENCODE/GENCODE Version 17 0 34.188 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel Gene Annotations from ENCODE/GENCODE Version 17\ parent wgEncodeGencodeV17\ shortLabel 2-Way\ track wgEncodeGencodeV17View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV17 GENCODE Genes V17 genePred Gene Annotations from ENCODE/GENCODE Version 17 0 34.188 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 17, June 2013) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The annotation was carried out on genome assembly GRCh37 (hg19).\

\

\ As of GENCODE Version 11, Ensembl and GENCODE have converged. The gene\ annotations in the GENCODE comprehensive set are the same as the corresponding\ Ensembl release. UCSC will continue to provide a separate Ensembl track on\ Human in the same format as the Ensembl tracks on other organisms.\

\

\ NOTE: Due to the UCSC Genome Browser using the NC_001807 mitochondrial\ genome sequence (chrM) and GENCODE annotating the NC_012920 mitochondrial\ sequence, the GENCODE mitochondrial annotations have been lifted to NC_001807\ coordinates in the UCSC Genome Browser. The original annotations with\ NC_012920 coordinates are available for download in the GENCODE GTF files.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \
\
2-way
\
\
    \
  • GENCODE 2-way Pseudogenes contains pseudogenes predicted by both the Yale\ Pseudopipe and UCSC Retrofinder pipelines. \ The set was derived by looking for 50 base pairs\ of overlap between pseudogenes derived from both sets based on their \ chromosomal coordinates. When multiple Pseudopipe\ predictions map to a single Retrofinder prediction, only one match is kept\ for the 2-way consensus set.\
    • \
\ \
\
PolyA
\
\
    \
  • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
    • \
\ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
  • Support Level: filter transcripts by transcription support level
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
  • all 2-way pseudogenes\
  • all polyA annotations\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • It no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in humans. Human transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • human leukocyte antigen (HLA) transcript\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

Downloads

\ GENCODE GTF files are available from the\ GENCODE release 17 site.\ \

Verification

\ \

\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

\
    \ \
  • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
    • \
  • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
    • \
  • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
    • \
\

See Harrow et al. (2006) for information on verification\ techniques.\

\ \

Release Notes

\

\ GENCODE version 17 corresponds to Ensembl 72 from June 2013 and Vega 52 from May 2013.

\ \

See also: The GENCODE Project\

\ \

Credits

\

This GENCODE release is the result of a collaborative effort among\ the following laboratories: (contact: \ GENCODE at the Sanger Institute)\ \

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Lab/InstitutionContributors
GENCODE Principal InvestigatorTim Hubbard
HAVANA manual annotation group,\ Wellcome Trust Sanger Insitute (WTSI), Hinxton, UKAdam Frankish, Jose Manuel Gonzalez, Mike Kay, Alexandra Bignell, \ Gloria Despacio-Reyes, Garaub Mukherjee, Gary Sanders, Veronika Boychenko, Jennifer Harrow
Genome Bioinformatics Lab (CRG),\ Barcelona, SpainThomas Derrien, Tyler Alioto, Andrea Tanzer, Roderic Guigó
Genome Bioinformatics, University of California Santa Cruz (UCSC), USARachel Harte, Mark Diekhans, Robert Baertsch, David Haussler
Computational Genomics Lab, Washington University St. Louis (WUSTL), USAJeltje van Baren, Charlie Comstock, David Lu, Michael Brent
Computer Science and Artificial Intelligence Lab,\ Broad Institute of MIT and Harvard, USAMike Lin, Manolis Kellis
Computational Biology and Bioinformatics, Yale University (Yale), USAPhilip Cayting, Suganthi Balasubramanian, Baikang Pei, Cristina Sisu, Mark Gerstein
Center for Integrative Genomics,\ University of Lausanne, Switzerland Cedric Howald, Alexandre Reymond
Ensembl Genebuild group,\ Wellcome Trust Sanger Insitute (WTSI), Hinxton, UKSteve Searle, Bronwen Aken, Amonida Zadissa, Daniel Barrell\
\ Structural Computational Biology Group, Centro Nacional de Investigaciones Oncologicas (CNIO), Madrid, SpainJosé Manuel Rodríguez, Michael Tress, Alfonso Valencia
\ \

References

\ \

\ Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa\ A, Searle S et al.\ \ GENCODE: the reference human genome annotation for The ENCODE Project.\ Genome Res. 2012 Sep;22(9):1760-74.\ PMID: 22955987; PMC: PMC3431492\

\ \

\ Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R,\ Swarbreck D et al.\ \ GENCODE: producing a reference annotation for ENCODE.\ Genome Biol. 2006;7 Suppl 1:S4.1-9.\ PMID: 16925838; PMC: PMC1810553\

\ \

A full list of GENCODE publications are available\ at The GENCODE Project\ web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel Gene Annotations from ENCODE/GENCODE Version 17\ priority 34.188\ shortLabel GENCODE Genes V17\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV17\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV17\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV17\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV17\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV17\ wgEncodeGencodePdb wgEncodeGencodePdbV17\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV17\ wgEncodeGencodePubMed wgEncodeGencodePubMedV17\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV17\ wgEncodeGencodeTag wgEncodeGencodeTagV17\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV17\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV17\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV17\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV17\ wgEncodeGencodeVersion 17\ wgEncodeGencodeV17ViewGenes Genes genePred Gene Annotations from ENCODE/GENCODE Version 17 3 34.188 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,ambiguous_orf,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,miRNA,misc_RNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,ambiguous_orf,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,retrotransposed,rRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV17 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV17\ longLabel Gene Annotations from ENCODE/GENCODE Version 17\ parent wgEncodeGencodeV17\ shortLabel Genes\ track wgEncodeGencodeV17ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV17ViewPolya PolyA genePred Gene Annotations from ENCODE/GENCODE Version 17 0 34.188 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel Gene Annotations from ENCODE/GENCODE Version 17\ parent wgEncodeGencodeV17\ shortLabel PolyA\ track wgEncodeGencodeV17ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV14View2Way 2-Way genePred Gene Annotations from ENCODE/GENCODE Version 14 0 34.191 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel Gene Annotations from ENCODE/GENCODE Version 14\ parent wgEncodeGencodeV14\ shortLabel 2-Way\ track wgEncodeGencodeV14View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV14 GENCODE Genes V14 genePred Gene Annotations from ENCODE/GENCODE Version 14 0 34.191 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 14, October 2012) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The annotation was carried out on genome assembly GRCh37 (hg19).\

\

\ As of GENCODE Version 11, Ensembl and GENCODE have converged. The gene\ annotations in the GENCODE comprehensive set are the same as the corresponding\ Ensembl release. UCSC will continue to provide a separate Ensembl track on\ Human in the same format as the Ensembl tracks on other organisms.\

\

\ NOTE: Due to the UCSC Genome Browser using the NC_001807 mitochondrial\ genome sequence (chrM) and GENCODE annotating the NC_012920 mitochondrial\ sequence, the GENCODE mitochondrial annotations have been lifted to NC_001807\ coordinates in the UCSC Genome Browser. The original annotations with\ NC_012920 coordinates are available for download in the GENCODE GTF files.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ Views available on this track are:\
\
Genes
\
The gene annotations in this view are divided into three subtracks:
\
\
    \
  • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
    • \
  • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
    • \
  • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
    • \
\ \
\
2-way
\
\
    \
  • GENCODE 2-way Pseudogenes contains pseudogenes predicted by both the Yale\ Pseudopipe and UCSC Retrofinder pipelines. \ The set was derived by looking for 50 base pairs\ of overlap between pseudogenes derived from both sets based on their \ chromosomal coordinates. When multiple Pseudopipe\ predictions map to a single Retrofinder prediction, only one match is kept\ for the 2-way consensus set.\
    • \
\ \
\
PolyA
\
\
    \
  • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
    • \
\ \ \

Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

\
    \
  • Transcript class: filter by the basic biological function of a transcript\ annotation\
      \
    • All - don't filter by transcript class
      • \
    • coding - display protein coding transcripts, including polymorphic pseudogenes
      • \
    • nonCoding - display non-protein coding transcripts
      • \
    • pseudo - display pseudogene transcript annotations
      • \
    • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
    \
    • \ \
  • Transcript Annotation Method: filter by the method used to create the annotation\
      \
    • All - don't filter by transcript class
      • \
    • manual - display manually created annotations, including those that are \ also created automatically
      • \
    • automatic - display automatically created annotations, including those that are \ also created manually
      • \
    • manual_only - display manually created annotations that were\ not annotated by the automatic method
      • \
    • automatic_only - display automatically created annotations that were\ not annotated by the manual method
      • \
    \
    • \
  • Transcript Biotype: filter transcripts by\ biotype
    • \
\ \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding \
  • non-coding \
  • pseudogene \
  • problem\
  • all 2-way pseudogenes\
  • all polyA annotations\
\ \

Methods

\ \

\ The GENCODE project aims to annotate all evidence-based gene features on the \ human reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

\ \

\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

\
    \
  • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
      \
    • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • Criteria for selection of non-coding transcripts at a given locus:\
      \
    • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized biotype (see below) were included in the\ basic set.
      • \
    • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
      • \
    \
    • \
  • It no transcripts were included by either the above criteria, the longest\ problem transcript is included.\
    • \
\ \

\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

\
    \
  • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
    • \
  • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
    • \
\ \

\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

\ \

The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in humans. Human transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

\ \

Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

\ \

The following categories are assigned to each of the evaluated annotations:

\ \
    \
  • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
  • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
    • \
  • tsl3 - the only support is from a single EST
    • \
  • tsl4 - the best supporting EST is flagged as suspect
    • \
  • tsl5 - no single transcript supports the model structure
    • \
  • tslNA - the transcript was not analyzed for one of the following reasons:\
      \
    • pseudogene annotation, including transcribed pseudogenes\
    • human leukocyte antigen (HLA) transcript\
    • immunoglobin gene transcript\
    • T-cell receptor transcript\
    • single-exon transcript (will be included in a future version)\
    \
    • \
\ \

Downloads

\ GENCODE GTF files are available from the\ GENCODE release 14 site.\ \

Verification

\ \

\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

\
    \ \
  • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
    • \
  • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
    • \
  • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
    • \
\

See Harrow et al. (2006) for information on verification\ techniques.\

\ \

Release Notes

\

\ This GENCODE version 14 corresponds to Ensembl 69 from October 2012\ and Vega 49 from September 2012.

\ \

See also: The GENCODE Project\

\ \

Credits

\

This GENCODE release is the result of a collaborative effort among\ the following laboratories: (contact: \ GENCODE at the Sanger Institute)\ \

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Lab/InstitutionContributors
GENCODE Principal InvestigatorTim Hubbard
HAVANA manual annotation group,\ Wellcome Trust Sanger Insitute (WTSI), Hinxton, UKAdam Frankish, Jose Manuel Gonzalez, Mike Kay, Alexandra Bignell, \ Gloria Despacio-Reyes, Garaub Mukherjee, Gary Sanders, Veronika Boychenko, Jennifer Harrow
Genome Bioinformatics Lab (CRG),\ Barcelona, SpainThomas Derrien, Tyler Alioto, Andrea Tanzer, Roderic Guigó
Genome Bioinformatics, University of California Santa Cruz (UCSC), USARachel Harte, Mark Diekhans, Robert Baertsch, David Haussler
Computational Genomics Lab, Washington University St. Louis (WUSTL), USAJeltje van Baren, Charlie Comstock, David Lu, Michael Brent
Computer Science and Artificial Intelligence Lab,\ Broad Institute of MIT and Harvard, USAMike Lin, Manolis Kellis
Computational Biology and Bioinformatics, Yale University (Yale), USAPhilip Cayting, Suganthi Balasubramanian, Baikang Pei, Cristina Sisu, Mark Gerstein
Center for Integrative Genomics,\ University of Lausanne, Switzerland Cedric Howald, Alexandre Reymond
Ensembl Genebuild group,\ Wellcome Trust Sanger Insitute (WTSI), Hinxton, UKSteve Searle, Bronwen Aken, Amonida Zadissa, Daniel Barrell\
\ Structural Computational Biology Group, Centro Nacional de Investigaciones Oncologicas (CNIO), Madrid, SpainJosé Manuel Rodríguez, Michael Tress, Alfonso Valencia
\ \

References

\ \

\ Flicek P, Amode MR, Barrell D, Beal K, Brent S, Chen Y, Clapham P, Coates G, Fairley S, Fitzgerald S et al.\ \ Ensembl 2011.\ Nucleic Acids Res. 2011 Jan;39(Database issue):D800-6.\

\ \

\ Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D et al.\ \ GENCODE: producing a reference annotation for ENCODE.\ Genome Biol. 2006;7 Suppl 1:S4.1-9.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel Gene Annotations from ENCODE/GENCODE Version 14\ priority 34.191\ shortLabel GENCODE Genes V14\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV14\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV14\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV14\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV14\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV14\ wgEncodeGencodePdb wgEncodeGencodePdbV14\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV14\ wgEncodeGencodePubMed wgEncodeGencodePubMedV14\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV14\ wgEncodeGencodeTag wgEncodeGencodeTagV14\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV14\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV14\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV14\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV14\ wgEncodeGencodeVersion 14\ wgEncodeGencodeV14ViewGenes Genes genePred Gene Annotations from ENCODE/GENCODE Version 14 2 34.191 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only,manual_and_automatic attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,ambiguous_orf,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,retrotransposed,rRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only,manual_and_automatic attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,ambiguous_orf,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,retrotransposed,rRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,TEC,transcribed_processed_pseudogene,transcribed_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV14 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV14\ longLabel Gene Annotations from ENCODE/GENCODE Version 14\ parent wgEncodeGencodeV14\ shortLabel Genes\ track wgEncodeGencodeV14ViewGenes\ type genePred\ view aGenes\ visibility full\ wgEncodeGencodeV14ViewPolya PolyA genePred Gene Annotations from ENCODE/GENCODE Version 14 0 34.191 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel Gene Annotations from ENCODE/GENCODE Version 14\ parent wgEncodeGencodeV14\ shortLabel PolyA\ track wgEncodeGencodeV14ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV7View2Way 2-Way genePred Gene Annotations from ENCODE/GENCODE Version 7 0 34.197 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel Gene Annotations from ENCODE/GENCODE Version 7\ parent wgEncodeGencodeV7\ shortLabel 2-Way\ track wgEncodeGencodeV7View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV7 GENCODE Genes V7 genePred Gene Annotations from ENCODE/GENCODE Version 7 0 34.197 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 7, May 2011) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation and ENSEMBL automatic annotation. \ Priority is given to the manually curated HAVANA annotation, using predicted\ ENSEMBL annotations when there are no corresponding manual annotations.\ The annotation was carried out on genome assembly GRCh37 (hg19).\

\

\ NOTE: Due to UCSC Genome Browser using the NC_001807 mitochondrial genome sequence\ (chrM) and GENCODE annotating the NC_012920 mitochondrial sequence, the\ GENCODE mitochondrial sequences are not available in the UCSC Genome Browser.\ These annotations are available for download in the GENCODE GTF files.\

\ \

\ NOTE: We try and synchronize the release cycles for GENCODE, Havana and\ Ensembl. This GENCODE version 7 corresponds to Ensembl 62 from 13 April 2011\ and Vega 23-03-2011. Also see:\ GENCODE project.\

\ \ \

Display Conventions and Configuration

\

\ The annotations are divided into separate tracks based on type of annotation.\ The basic set of coding and non-coding transcripts is a subset of\ the comprehensive set selected to provide a simplified view of the transcript\ set designed to suit the needs of a majority of users. The selection algorithm is described in\ the next section.\ The available tracks are:\ \

\
    \
  • GENCODE Basic set - subset of the GENCODE coding and non-coding\ transcript annotations, including polymorphic pseudogenes. This includes\ both manual and automatic annotations. The selection criteria is\ described in the next section.\ This is subset of the comprehensive set.\ \
  • GENCODE Comprehensive set - all GENCODE coding and non-code transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations, except pseudogenes. This is super-set of\ the basic set.\
  • GENCODE Pseudogenes - all pseudogene annotations except polymorphic pseudogenes\ \
  • GENCODE 2-way Pseudogenes - Pseudogenes predicted by the Yale\ Pseudopipe and UCSC Retrofinder pipelines. The set was derived by looking\ for a 50 base pairs of overlap between pseudogenes derived from both sets\ based on their genomic locations i.e. chromosomal coordinates. When multiple\ Pseudopipe predictions map to a single Retrofinder prediction, only one match is kept\ for the 2-way consensus set.\
  • GENCODE PolyA - This track contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching to the genome.\
\ \ \

GENCODE basic set selection

\

\ The GENCODE basic set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. Selection for the GENCODE annotations to include in the basic set\ is done on a per-locus basis and then for coding and non-coding transcripts\ within that locus. The goal is to use the better quality\ transcript annotations while still having some annotation present for\ each locus.\

\ \

The selection criteria for a given locus is:

\
    \
  • Coding transcripts (including polymorphic pseudogenes):\
      \
    • If there are any full length coding transcripts that are not\ nonsense-mediated decay or problem transcripts, then only they are\ included in the basic set.\
    • Otherwise, use the coding transcript with the largest CDS.\
    \
  • Non-coding transcripts:\
      \
    • If there are any full length non-coding transcripts and they have a\ well characterized BioType (see below), then only they are included in the\ basic set.\
    • Otherwise, use the largest non-coding transcript.\
    \
\ \
Non-coding transcript categories
\

Non-coding transcripts are categorized using\ their BioType\ and the following criteria:\

\ \
    \
  • well characterized: antisense, lincRNA, miRNA, Mt_rRNA, Mt_tRNA,\ rRNA, snoRNA, snRNA\
  • poorly characterized: non_coding, processed_transcript,\ retrotransposed, misc_RNA\
\ \

Filtering

\

\ Items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ can be filter using the following criteria:\

\
    \
  • Transcript class: Filter by the basic biological function of a transcript\ annotation.\
      \
    • All - Don't filter by transcript class.\
    • coding - Display protein coding transcripts, including polymorphic pseudogenes.\
    • nonCoding - Display non-protein coding transcripts.\
    • pseudo - Display pseudogene transcript annotations.\
    • problem - Display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain).\
    \ \
  • Annotation Method: Filter by the method used to create the annotation.\
      \
    • All - Don't filter by transcript class.\
    • manual - display manually created annotations, including those that are \ also created automatically.\
    • automatic - display automatically created annotations, including those that are \ also created manually.\
    • manual_only - display manually created annotations there were\ not annotated by the automatic method.\
    • automatic_only - display automatically created annotations there were\ not annotated by the manual method.\
    \ \
  • Transcript Type: filter transcripts by BioType.\
\ \

Coloring

\

\ The gene annotations are colored based on the annotation type:\

\ \ \ \ \
Manual and automatic\ coding\ non-coding\ pseudogene\ problem\
2-way pseudogene\ all\
PolyA annotations\ all\
\ \

Methods

\ \

\ We aim to annotate all evidence-based gene features at high accuracy on\ the human reference sequence. This includes identifying all\ protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. We integrate\ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification.\

\

For a detailed description of the methods and references used, see\ Harrow et al (2006).\

\ \

Verification

\ \

See Harrow et al. (2006) for information on verification\ techniques.\

\

\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

\
    \ \
  • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
    • \
  • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
    • \
  • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
    • \
\ \

Credits

\ \

This GENCODE release is the result of a collaborative effort among\ the following laboratories: (contact: \ GENCODE at the Sanger Institute.\ )\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Lab/InstitutionContributors
GENCODE Principal InvestigatorTim Hubbard
HAVANA manual annotation group,\ Wellcome Trust Sanger Insitute (WTSI), Hinxton, UKAdam Frankish, Jose Manuel Gonzalez, Mike Kay, Alexandra Bignell, \ Gloria Despacio-Reyes, Garaub Mukherjee, Gary Sanders, Veronika Boychenko, Jennifer Harrow
Genome Bioinformatics Lab (CRG),\ Barcelona, SpainThomas Derrien, Tyler Alioto, Andrea Tanzer, Roderic Guigó
Genome Bioinformatics, University of California Santa Cruz (UCSC), USARachel Harte, Mark Diekhans, Robert Baertsch, David Haussler
Comp. Genomics Lab, Washington University St. Louis (WUSTL), USAJeltje van Baren, Charlie Comstock, David Lu, Michael Brent
Computer Science and Artificial Intelligence Lab,\ Broad Institute of MIT and Harvard, USAMike Lin, Manolis Kellis
Computational Biology and Bioinformatics, Yale University (Yale), USAPhilip Cayting, Suganthi Balasubramanian, Baikang Pei, Cristina Sisu, Mark Gerstein
Center for Integrative Genomics,\ University of Lausanne, Switzerland Cedric Howald, Alexandre Reymond
ENSEMBL genebuild group,\ Wellcome Trust Sanger Insitute (WTSI), Hinxton, UKSteve Searle, Bronwen Aken, Amonida Zadissa, Daniel Barrell\
\ Structural Computational Biology Group, Centro Natcional de Investigaciones Oncologicas (CNIO), Madrid, SpainJosé Manuel Rodríguez, Michael Tress, Alfonso Valencia
\ \

References

\ \

Flicek et al.\ Ensembl 2011.\ Nucleic Acids Research. 2011;39 Database issue:D800-D806\

\ \

Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D et al.\ GENCODE: producing a reference annotation\ for ENCODE. Genome Biol. 2006;7 Suppl\ 1:S4.1-9.

\ \ \

Data Release Policy

\

GENCODE data are available for use without restrictions.\ The full data release policy for ENCODE is available\ here.

\ \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ ensemblGeneIdUrl http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;t=%s\ ensemblTranscriptIdUrl http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;t=%s\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel Gene Annotations from ENCODE/GENCODE Version 7\ priority 34.197\ shortLabel GENCODE Genes V7\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV7\ type genePred\ vegaGeneIdUrl http://vega.sanger.ac.uk/Homo_sapiens/Gene/Summary?db=core;g=%s\ vegaTranscriptIdUrl http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=%s\ visibility hide\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV7\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV7\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV7\ wgEncodeGencodePdb wgEncodeGencodePdbV7\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV7\ wgEncodeGencodePubMed wgEncodeGencodePubMedV7\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV7\ wgEncodeGencodeTag wgEncodeGencodeTagV7\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV7\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV7\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV7\ wgEncodeGencodeVersion 7\ yalePseudoUrl http://tables.pseudogene.org/%s\ wgEncodeGencodeV7ViewGenes Genes genePred Gene Annotations from ENCODE/GENCODE Version 7 2 34.197 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=ambiguous_orf,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,miRNA,miRNA_pseudogene,misc_RNA,misc_RNA_pseudogene,Mt_tRNA_pseudogene,ncrna_host,nonsense_mediated_decay,non_coding,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,retrotransposed,rRNA,rRNA_pseudogene,scRNA_pseudogene,snoRNA,snoRNA_pseudogene,snRNA,snRNA_pseudogene,TEC,transcribed_processed_pseudogene,transcribed_unprocessed_pseudogene,tRNA_pseudogene,TR_C_gene,TR_J_gene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy attrs.transcriptType:Transcript_Biotype=ambiguous_orf,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,miRNA,miRNA_pseudogene,misc_RNA,misc_RNA_pseudogene,Mt_tRNA_pseudogene,ncrna_host,nonsense_mediated_decay,non_coding,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,retrotransposed,rRNA,rRNA_pseudogene,scRNA_pseudogene,snoRNA,snoRNA_pseudogene,snRNA,snRNA_pseudogene,TEC,transcribed_processed_pseudogene,transcribed_unprocessed_pseudogene,tRNA_pseudogene,TR_C_gene,TR_J_gene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV7 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV7\ longLabel Gene Annotations from ENCODE/GENCODE Version 7\ parent wgEncodeGencodeV7\ shortLabel Genes\ track wgEncodeGencodeV7ViewGenes\ type genePred\ view aGenes\ visibility full\ wgEncodeGencodeV7ViewPolya PolyA genePred Gene Annotations from ENCODE/GENCODE Version 7 0 34.197 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel Gene Annotations from ENCODE/GENCODE Version 7\ parent wgEncodeGencodeV7\ shortLabel PolyA\ track wgEncodeGencodeV7ViewPolya\ type genePred\ view cPolya\ visibility hide\ chainEchTel2 Tenrec Chain chain echTel2 Tenrec (Nov. 2012 (Broad/echTel2)) Chained Alignments 3 35 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Tenrec (Nov. 2012 (Broad/echTel2)) Chained Alignments\ otherDb echTel2\ parent placentalChainNetViewchain off\ shortLabel Tenrec Chain\ subGroups view=chain species=s104 clade=c07\ track chainEchTel2\ type chain echTel2\ wgEncodeOpenChromChipA549Pol2BaseOverlapSignal A549 Pol2 OS bigWig 0.000000 3231.000000 A549 Pol2 TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 35 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 Pol2 TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel A549 Pol2 OS\ subGroups treatment=AANONE view=SIGBO factor=POL2 cellType=t2A549\ track wgEncodeOpenChromChipA549Pol2BaseOverlapSignal\ type bigWig 0.000000 3231.000000\ encTfChipPkENCFF532MZI A549 POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in A549 from ENCODE 3 (ENCFF532MZI) 1 35 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in A549 from ENCODE 3 (ENCFF532MZI)\ parent encTfChipPk off\ shortLabel A549 POLR2A 1\ subGroups cellType=A549 factor=POLR2A\ track encTfChipPkENCFF532MZI\ wgEncodeUwDgfAoafSig AoAF Sig bigWig 1.000000 87444.000000 AoAF DNaseI DGF Per-base Signal from ENCODE/UW 2 35 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AoAF DNaseI DGF Per-base Signal from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewSignal off\ shortLabel AoAF Sig\ subGroups view=Signal cellType=t3AOAF treatment=aNONE rep=rep1\ track wgEncodeUwDgfAoafSig\ type bigWig 1.000000 87444.000000\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep2LK20_CNhs13364_ctss_fwd AorticSmsToFgf2_03hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_forward 0 35 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep2%20%28LK20%29.CNhs13364.12746-136A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12746-136A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_03hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep2LK20_CNhs13364_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep2LK20_CNhs13364_tpm_fwd AorticSmsToFgf2_03hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_forward 1 35 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep2%20%28LK20%29.CNhs13364.12746-136A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12746-136A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_03hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep2LK20_CNhs13364_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1\ urlLabel FANTOM5 Details:\ pgNA19700 ASW NA19700 pgSnp ASW NA19700 (Complete Genomics) 0 35 0 0 0 127 127 127 0 0 0 varRep 1 longLabel ASW NA19700 (Complete Genomics)\ parent pgSnpCg\ shortLabel ASW NA19700\ subGroups view=C_CG id=CA_div_GS19700 type=SNP\ track pgNA19700\ wgEncodeHaibRnaSeqBe2cRawRep2 BE2_C 2 bigWig 0.145512 1134.989990 BE2_C RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 35 0 0 0 127 127 127 0 0 0 expression 0 longLabel BE2_C RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel BE2_C 2\ subGroups view=RawSignal cellType=t3BE2C treatment=zNONE rep=rep2\ track wgEncodeHaibRnaSeqBe2cRawRep2\ type bigWig 0.145512 1134.989990\ wgEncodeHaibMethylRrbsBjUwSitesRep1 BJ 1 bed 9 + BJ Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 35 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel BJ 1\ subGroups cellType=t3BJ obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBjUwSitesRep1\ type bed 9 +\ wgEncodeUwAffyExonArrayGm12864SimpleSignalRep1 GM12864 1 broadPeak GM12864 Exon-array Signal Rep 1 from ENCODE/UW 0 35 0 0 0 127 127 127 0 0 0 expression 1 longLabel GM12864 Exon-array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel GM12864 1\ subGroups cellType=t3GM12864 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayGm12864SimpleSignalRep1\ type broadPeak\ wgEncodeAwgTfbsHaibGm12878Mef2aPcr1xUniPk GM12878 MEF2A narrowPeak GM12878 TFBS Uniform Peaks of MEF2A from ENCODE/HudsonAlpha/Analysis 1 35 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of MEF2A from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 MEF2A\ subGroups tier=a10 cellType=a10GM12878 factor=MEF2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Mef2aPcr1xUniPk\ wgEncodeAwgDnaseDukeGm19240UniPk GM19240 DNase narrowPeak GM19240 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 35 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM19240 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel GM19240 DNase\ subGroups tier=a30 cellType=GM19240\ track wgEncodeAwgDnaseDukeGm19240UniPk\ wgEncodeHaibTfbsGm12878Ebfsc137065Pcr1xPkRep2 GM78 EBF1 PCR1 2 broadPeak GM12878 EBF1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 35 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 EBF1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 EBF1 PCR1 2\ subGroups view=Peaks factor=EBF1SC137065 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Ebfsc137065Pcr1xPkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12878MafkIggmusPk GM78 MafK IgM narrowPeak GM12878 MafK (ab50322) IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 35 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 MafK (ab50322) IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 MafK IgM\ subGroups view=Peaks factor=MAFK cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878MafkIggmusPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqGm12878NucleolusTotalContigs GM78 nlus tot C bed 6 + GM12878 nucleolus total RNA-seq Contigs Pooled from ENCODE/CSHL 3 35 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleolus total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel GM78 nlus tot C\ subGroups view=Contigs cellType=t1GM12878 localization=NUCLEOLUS rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqGm12878NucleolusTotalContigs\ type bed 6 +\ wgEncodeBroadHistoneH1hescEzh239875Sig H1-hESC EZH2 bigWig 0.040000 25825.679688 H1-hESC EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 35 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC EZH2\ subGroups view=Signal factor=EZH239875 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescEzh239875Sig\ type bigWig 0.040000 25825.679688\ wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UMinusRawRep1V4 H1ES 1x75D - 1 bigWig -46057.500000 -0.020000 H1-hESC single read RNA-seq Minus Signal Rep 1 from ENCODE/Caltech 2 35 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC single read RNA-seq Minus Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewMinusSignal off\ shortLabel H1ES 1x75D - 1\ subGroups view=MinusSignal cellType=t1H1HESC readType=r1x75D insertLength=ilNa rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UMinusRawRep1V4\ type bigWig -46057.500000 -0.020000\ wgEncodeRikenCageH1hescCytosolPapPlusSignalRep2 H1ES cyto pA+ + 2 bigWig 0.040000 11435.740234 H1-hESC cytosol polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 35 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC cytosol polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel H1ES cyto pA+ + 2\ subGroups view=PlusRawSignal cellType=t1H1HESC localization=cytosol rnaExtract=pAP rep=rep2 rank=rank1\ track wgEncodeRikenCageH1hescCytosolPapPlusSignalRep2\ type bigWig 0.040000 11435.740234\ wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapMinusRawRep2 H1ES nucl TAP - 2 bigWig 1.000000 5206543.000000 H1-hESC TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 35 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel H1ES nucl TAP - 2\ subGroups view=MinusSignal cellType=t1H1HESC localization=NUCLEUS protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapMinusRawRep2\ type bigWig 1.000000 5206543.000000\ wgEncodeHaibGenotypeHeeRegionsRep2 HEEpiC 1 bed 9 + HEEpiC Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB 0 35 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HEEpiC Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HEEpiC 1\ subGroups cellType=t3HEEPIC obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeHeeRegionsRep2\ type bed 9 +\ wgEncodeOpenChromDnaseHelas3Sig HeLaS3 DS bigWig 0.000000 2.024200 HeLa-S3 DNaseI HS Density Signal from ENCODE/Duke 2 35 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel HeLaS3 DS\ subGroups view=SIG cellType=t2HELAS3 treatment=zNONE\ track wgEncodeOpenChromDnaseHelas3Sig\ type bigWig 0.000000 2.024200\ wgEncodeUwTfbsHepg2CtcfStdPkRep2 HepG2 CTCF Pk 2 narrowPeak HepG2 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 35 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HepG2 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t2HEPG2 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHepg2CtcfStdPkRep2\ type narrowPeak\ wgEncodeUwDnaseHepg2PkRep1 HepG2 Pk 1 narrowPeak HepG2 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 35 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HepG2 Pk 1\ subGroups view=Peaks cellType=t2HEPG2 rep=rep1 treatment=None\ track wgEncodeUwDnaseHepg2PkRep1\ type narrowPeak\ wgEncodeUwRepliSeqHepg2S4PctSignalRep1 HepG2 S4 1 bigWig 1.000000 100.000000 HepG2 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 35 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HepG2 S4 1\ subGroups view=v1PctSignal cellType=t2HEPG2 phase=p5S4 rep=rep1\ track wgEncodeUwRepliSeqHepg2S4PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeHaibMethyl450HipeSitesRep1 HIPEpiC bed 9 HIPEpiC Methylation 450K Bead Array from ENCODE/HAIB 1 35 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HIPEpiC Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel HIPEpiC\ subGroups cellType=t3HIPEPIC obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450HipeSitesRep1\ type bed 9\ dhcHumDerDenAncInFrameNonsynFixed InFrNS Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: In-frame Non-synonymous 0 35 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: In-frame Non-synonymous\ parent dhcHumDerDenAncEns\ shortLabel InFrNS Fxd\ subGroups view=Ens subset=InFrameNonsyn freq=Fixed\ track dhcHumDerDenAncInFrameNonsynFixed\ wgEncodeUwHistoneK562H3k36me3StdHotspotsRep2 K562 H3K36M3 Ht 2 broadPeak K562 H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 35 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot on\ shortLabel K562 H3K36M3 Ht 2\ subGroups view=Hot factor=H3K36ME3 cellType=t1K562 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneK562H3k36me3StdHotspotsRep2\ type broadPeak\ wgEncodeSunyRipSeqK562RipinputAlnRep2 K562 Input 2 bam K562 RIP-Input RIP-seq Alignments Rep 2 from ENCODE/SUNY 0 35 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 RIP-Input RIP-seq Alignments Rep 2 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewAlignments off\ shortLabel K562 Input 2\ subGroups view=Alignments factor=ripInput cellType=t1K562 rep=rep2\ track wgEncodeSunyRipSeqK562RipinputAlnRep2\ type bam\ wgEncodeGisRnaPetK562PolysomePapPlusRawSigRep1 K562 poly pA+ + 1 bigWig 1.000000 424954.000000 K562 polysome polyA+ clone-based RNA PET Plus signal Rep 1 from ENCODE/GIS 2 35 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 polysome polyA+ clone-based RNA PET Plus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel K562 poly pA+ + 1\ subGroups view=v2PlusRawSignal cellType=aK562 cloned=Based localization=polysome rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562PolysomePapPlusRawSigRep1\ type bigWig 1.000000 424954.000000\ wgEncodeOpenChromFaireMcf7Est10nm30mSig MCF-7 Est FAIR DS bigWig 0.000000 0.958900 MCF-7 Estradiol 10nM 30m FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 35 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 Estradiol 10nM 30m FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel MCF-7 Est FAIR DS\ subGroups view=SIG cellType=t2MCF7 treatment=EST10NM30M\ track wgEncodeOpenChromFaireMcf7Est10nm30mSig\ type bigWig 0.000000 0.958900\ wgEncodeDukeAffyExonMcf7HypoxlacSimpleSignalRep1 MCF-7 Hypox 1 bigBed 6 + MCF-7 Hypoxia, Lactic acidosis Exon array Signal Rep 1 from ENCODE/Duke 0 35 0 0 0 127 127 127 1 0 0 expression 1 longLabel MCF-7 Hypoxia, Lactic acidosis Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel MCF-7 Hypox 1\ subGroups cellType=t2MCF7 treatment=HYPOXLAC rep=rep1\ track wgEncodeDukeAffyExonMcf7HypoxlacSimpleSignalRep1\ type bigBed 6 +\ wgEncodeSydhHistoneNt2d1H3k36me3bUcdSig NT2-D1 H3K36me3 bigWig 1.000000 5119.000000 NT2D1 H3K36me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 35 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NT2D1 H3K36me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal on\ shortLabel NT2-D1 H3K36me3\ subGroups view=Signal factor=H3K36me3B cellType=cNT2D1 control=UCD treatment=NONE\ track wgEncodeSydhHistoneNt2d1H3k36me3bUcdSig\ type bigWig 1.000000 5119.000000\ gtexEqtlTissueSmallIntestine smallIntestine bed 9 + Expression QTL in Small_Intestine_Terminal_Ileum from GTEx V6 0 35 205 183 158 230 219 206 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 205,183,158\ idInUrlSql select gene from gtexEqtlTissueSmallIntestine where name='%s'\ longLabel Expression QTL in Small_Intestine_Terminal_Ileum from GTEx V6\ parent gtexEqtlTissue on\ shortLabel smallIntestine\ track gtexEqtlTissueSmallIntestine\ Agilent_Human_Exon_V5_UTRs_Regions SureSel. V5+UTR T bigBed Agilent - SureSelect All Exon V5 + UTRs Target Regions 0 35 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S04380219_Regions.bb\ color 120,94,240\ longLabel Agilent - SureSelect All Exon V5 + UTRs Target Regions\ parent exomeProbesets off\ shortLabel SureSel. V5+UTR T\ track Agilent_Human_Exon_V5_UTRs_Regions\ type bigBed\ netEchTel2 Tenrec Net netAlign echTel2 chainEchTel2 Tenrec (Nov. 2012 (Broad/echTel2)) Alignment Net 1 36 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Tenrec (Nov. 2012 (Broad/echTel2)) Alignment Net\ otherDb echTel2\ parent placentalChainNetViewnet off\ shortLabel Tenrec Net\ subGroups view=net species=s104 clade=c07\ track netEchTel2\ type netAlign echTel2 chainEchTel2\ wgEncodeOpenChromChipA549InputSig A549 Input DS bigWig 0.000000 3.520600 A549 Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 36 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel A549 Input DS\ subGroups treatment=AANONE view=SIG factor=zCTRL cellType=t2A549\ track wgEncodeOpenChromChipA549InputSig\ type bigWig 0.000000 3.520600\ encTfChipPkENCFF292PSZ A549 POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in A549 from ENCODE 3 (ENCFF292PSZ) 1 36 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in A549 from ENCODE 3 (ENCFF292PSZ)\ parent encTfChipPk off\ shortLabel A549 POLR2A 2\ subGroups cellType=A549 factor=POLR2A\ track encTfChipPkENCFF292PSZ\ wgEncodeUwDgfAoafRaw AoAF Raw bigWig 1.000000 357614.000000 AoAF DNaseI DGF Raw Signal from ENCODE/UW 0 36 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AoAF DNaseI DGF Raw Signal from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewzRaw off\ shortLabel AoAF Raw\ subGroups view=zRaw cellType=t3AOAF treatment=aNONE rep=rep1\ track wgEncodeUwDgfAoafRaw\ type bigWig 1.000000 357614.000000\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep2LK20_CNhs13364_ctss_rev AorticSmsToFgf2_03hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_reverse 0 36 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep2%20%28LK20%29.CNhs13364.12746-136A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12746-136A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_03hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep2LK20_CNhs13364_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep2LK20_CNhs13364_tpm_rev AorticSmsToFgf2_03hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_reverse 1 36 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep2%20%28LK20%29.CNhs13364.12746-136A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12746-136A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_03hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep2LK20_CNhs13364_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1\ urlLabel FANTOM5 Details:\ pgNA19700indel ASW NA19700 indel pgSnp ASW NA19700 indel (Complete Genomics) 0 36 0 0 0 127 127 127 0 0 0 varRep 1 longLabel ASW NA19700 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel ASW NA19700 indel\ subGroups view=C_CG id=CA_div_GS19700 type=Indel\ track pgNA19700indel\ wgEncodeHaibRnaSeqBe2cAlnRep2 BE2_C 2 bam BE2_C RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 36 0 0 0 127 127 127 0 0 0 expression 1 longLabel BE2_C RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel BE2_C 2\ subGroups view=Alignments cellType=t3BE2C treatment=zNONE rep=rep2\ track wgEncodeHaibRnaSeqBe2cAlnRep2\ type bam\ wgEncodeHaibMethylRrbsBjUwSitesRep2 BJ 2 bed 9 + BJ Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 36 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel BJ 2\ subGroups cellType=t3BJ obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBjUwSitesRep2\ type bed 9 +\ wgEncodeAwgDnaseDukeGlioblaUniPk Gliobla DNase narrowPeak Gliobla DNaseI HS Uniform Peaks from ENCODE/Analysis 1 36 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Gliobla DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Gliobla DNase\ subGroups tier=a30 cellType=Gliobla\ track wgEncodeAwgDnaseDukeGlioblaUniPk\ wgEncodeUwAffyExonArrayGm12865SimpleSignalRep1 GM12865 1 broadPeak GM12865 Exon-array Signal Rep 1 from ENCODE/UW 0 36 0 0 0 127 127 127 0 0 0 expression 1 longLabel GM12865 Exon-array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel GM12865 1\ subGroups cellType=t3GM12865 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayGm12865SimpleSignalRep1\ type broadPeak\ wgEncodeAwgTfbsHaibGm12878Mef2csc13268V0416101UniPk GM12878 MEF2C narrowPeak GM12878 TFBS Uniform Peaks of MEF2C_(SC-13268) from ENCODE/HudsonAlpha/Analysis 1 36 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of MEF2C_(SC-13268) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 MEF2C\ subGroups tier=a10 cellType=a10GM12878 factor=MEF2C lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Mef2csc13268V0416101UniPk\ wgEncodeHaibTfbsGm12878Ebf1sc137065Pcr1xRawRep2 GM78 EBF1 PCR1 2 bigWig 0.198833 116.863998 GM12878 EBF1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 36 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 EBF1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 EBF1 PCR1 2\ subGroups view=RawSignal factor=EBF1SC137065 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Ebf1sc137065Pcr1xRawRep2\ type bigWig 0.198833 116.863998\ wgEncodeSydhTfbsGm12878MafkIggmusSig GM78 MafK IgM bigWig 1.000000 408.000000 GM12878 MafK (ab50322) IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 36 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 MafK (ab50322) IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 MafK IgM\ subGroups view=Signal factor=MAFK cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878MafkIggmusSig\ type bigWig 1.000000 408.000000\ wgEncodeCshlLongRnaSeqGm12878NucleolusTotalJunctions GM78 nlus tot J bed 6 + GM12878 nucleolus total RNA-seq Junctions Pooled from ENCODE/CSHL 0 36 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleolus total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel GM78 nlus tot J\ subGroups view=Junctions cellType=t1GM12878 localization=NUCLEOLUS rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqGm12878NucleolusTotalJunctions\ type bed 6 +\ wgEncodeBroadHistoneH1hescH2azStdPk H1-hESC H2A.Z broadPeak H1-hESC H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 36 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH2azStdPk\ type broadPeak\ wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UMinusRawRep2V4 H1ES 1x75D - 2 bigWig -106818.500000 -0.018500 H1-hESC single read RNA-seq Minus Signal Rep 2 from ENCODE/Caltech 2 36 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC single read RNA-seq Minus Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewMinusSignal off\ shortLabel H1ES 1x75D - 2\ subGroups view=MinusSignal cellType=t1H1HESC readType=r1x75D insertLength=ilNa rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UMinusRawRep2V4\ type bigWig -106818.500000 -0.018500\ wgEncodeRikenCageH1hescCytosolPapMinusSignalRep2 H1ES cyto pA+ - 2 bigWig 0.040000 9035.400391 H1-hESC cytosol polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 36 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC cytosol polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel H1ES cyto pA+ - 2\ subGroups view=MinusRawSignal cellType=t1H1HESC localization=cytosol rnaExtract=pAP rep=rep2 rank=rank1\ track wgEncodeRikenCageH1hescCytosolPapMinusSignalRep2\ type bigWig 0.040000 9035.400391\ wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapPlusRawRep2 H1ES nucl TAP + 2 bigWig 1.000000 2851215.000000 H1-hESC TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 36 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel H1ES nucl TAP + 2\ subGroups view=PlusSignal cellType=t1H1HESC localization=NUCLEUS protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapPlusRawRep2\ type bigWig 1.000000 2851215.000000\ wgEncodeHaibGenotypeHek293RegionsRep2 HEK293 1 bed 9 + HEK293 Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB 0 36 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HEK293 Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HEK293 1\ subGroups cellType=t3HEK293 obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeHek293RegionsRep2\ type bed 9 +\ wgEncodeOpenChromDnaseHelas3BaseOverlapSignal HeLaS3 OS bigWig 0.000000 265.000000 HeLa-S3 DNaseI HS Overlap Signal from ENCODE/Duke 2 36 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel HeLaS3 OS\ subGroups view=SIGBO cellType=t2HELAS3 treatment=zNONE\ track wgEncodeOpenChromDnaseHelas3BaseOverlapSignal\ type bigWig 0.000000 265.000000\ wgEncodeUwTfbsHepg2CtcfStdRawRep2 HepG2 CTCF Sg 2 bigWig 1.000000 5725.000000 HepG2 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 36 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HepG2 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t2HEPG2 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHepg2CtcfStdRawRep2\ type bigWig 1.000000 5725.000000\ wgEncodeUwRepliSeqHepg2G2PctSignalRep1 HepG2 G2 1 bigWig 1.000000 100.000000 HepG2 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 36 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HepG2 G2 1\ subGroups view=v1PctSignal cellType=t2HEPG2 phase=p6G2 rep=rep1\ track wgEncodeUwRepliSeqHepg2G2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeUwDnaseHepg2RawRep1 HepG2 Sg 1 bigWig 1.000000 11297.000000 HepG2 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 36 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HepG2 Sg 1\ subGroups view=zRSig cellType=t2HEPG2 rep=rep1 treatment=None\ track wgEncodeUwDnaseHepg2RawRep1\ type bigWig 1.000000 11297.000000\ wgEncodeHaibMethyl450Hl60SitesRep1 HL-60 bed 9 HL-60 Methylation 450K Bead Array from ENCODE/HAIB 1 36 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel HL-60\ subGroups cellType=t3HL60 obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450Hl60SitesRep1\ type bed 9\ wgEncodeUwHistoneK562H3k36me3StdPkRep2 K562 H3K36M3 Pk 2 narrowPeak K562 H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 36 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks on\ shortLabel K562 H3K36M3 Pk 2\ subGroups view=Peaks factor=H3K36ME3 cellType=t1K562 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneK562H3k36me3StdPkRep2\ type narrowPeak\ wgEncodeSunyRipSeqK562RipinputPk K562 Input Pk broadPeak K562 RIP-Input RIP-seq Analysis from ENCODE/SUNY 2 36 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 RIP-Input RIP-seq Analysis from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewPeaks off\ shortLabel K562 Input Pk\ subGroups view=Peaks factor=ripInput cellType=t1K562 rep=Pooled\ track wgEncodeSunyRipSeqK562RipinputPk\ type broadPeak\ wgEncodeGisRnaPetK562PolysomePapAlnRep1 K562 poly pA+ A 1 bam K562 polysome polyA+ clone-based RNA PET Alignments Rep 1 from ENCODE/GIS 0 36 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 polysome polyA+ clone-based RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel K562 poly pA+ A 1\ subGroups view=v3Alignments cellType=aK562 cloned=Based localization=polysome rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetK562PolysomePapAlnRep1\ type bam\ wgEncodeOpenChromFaireMcf7Est10nm30mBaseOverlapSignal MCF-7 Est FAIR OS bigWig 0.000000 2594.000000 MCF-7 Estradiol 10nM 30m FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 36 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 Estradiol 10nM 30m FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel MCF-7 Est FAIR OS\ subGroups view=SIGBO cellType=t2MCF7 treatment=EST10NM30M\ track wgEncodeOpenChromFaireMcf7Est10nm30mBaseOverlapSignal\ type bigWig 0.000000 2594.000000\ wgEncodeDukeAffyExonMcf7RandshrnaSimpleSignalRep1 MCF-7 RANDsh 1 bigBed 6 + MCF-7 Randomized shRNA control Exon array Signal Rep 1 from ENCODE/Duke 0 36 0 0 0 127 127 127 1 0 0 expression 1 longLabel MCF-7 Randomized shRNA control Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel MCF-7 RANDsh 1\ subGroups cellType=t2MCF7 treatment=RANDSHRNA rep=rep1\ track wgEncodeDukeAffyExonMcf7RandshrnaSimpleSignalRep1\ type bigBed 6 +\ dhcHumDerDenAncNonsynFixed Nonsyn Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: Non-synonymous 0 36 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: Non-synonymous\ parent dhcHumDerDenAncEns\ shortLabel Nonsyn Fxd\ subGroups view=Ens subset=Nonsyn freq=Fixed\ track dhcHumDerDenAncNonsynFixed\ wgEncodeSydhHistoneNt2d1InputUcdSig NT2-D1 Input bigWig 1.000000 13293.000000 NT2D1 Input Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 36 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NT2D1 Input Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel NT2-D1 Input\ subGroups view=Signal factor=INPUT cellType=cNT2D1 control=UCD treatment=NONE\ track wgEncodeSydhHistoneNt2d1InputUcdSig\ type bigWig 1.000000 13293.000000\ gtexEqtlTissueSpleen spleen bed 9 + Expression QTL in Spleen from GTEx V6 0 36 205 183 158 230 219 206 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 205,183,158\ idInUrlSql select gene from gtexEqtlTissueSpleen where name='%s'\ longLabel Expression QTL in Spleen from GTEx V6\ parent gtexEqtlTissue on\ shortLabel spleen\ track gtexEqtlTissueSpleen\ Agilent_Human_Exon_V6_Covered SureSel. V6 P bigBed Agilent - SureSelect All Exon V6 r2 Covered by Probes 0 36 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S07604514_Covered.bb\ color 120,94,240\ longLabel Agilent - SureSelect All Exon V6 r2 Covered by Probes\ parent exomeProbesets off\ shortLabel SureSel. V6 P\ track Agilent_Human_Exon_V6_Covered\ type bigBed\ chainLoxAfr3 Elephant Chain chain loxAfr3 Elephant (Jul. 2009 (Broad/loxAfr3)) Chained Alignments 3 37 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Elephant (Jul. 2009 (Broad/loxAfr3)) Chained Alignments\ otherDb loxAfr3\ parent placentalChainNetViewchain off\ shortLabel Elephant Chain\ subGroups view=chain species=s107 clade=c07\ track chainLoxAfr3\ type chain loxAfr3\ wgEncodeGisRnaPetA549CellPapClusters A549 cell pA+ bed 6 + A549 whole cell polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS 2 37 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 whole cell polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel A549 cell pA+\ subGroups view=v1Clusters rep=rep1 rank=none cellType=bA549 cloned=Free localization=cell rnaExtract=PAP\ track wgEncodeGisRnaPetA549CellPapClusters\ type bed 6 +\ encTfChipPkENCFF958VNQ A549 RAD21 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in A549 from ENCODE 3 (ENCFF958VNQ) 1 37 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in A549 from ENCODE 3 (ENCFF958VNQ)\ parent encTfChipPk off\ shortLabel A549 RAD21\ subGroups cellType=A549 factor=RAD21\ track encTfChipPkENCFF958VNQ\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_ctss_fwd AorticSmsToFgf2_03hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_forward 0 37 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep3%20%28LK21%29.CNhs13573.12844-137B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12844-137B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_03hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_tpm_fwd AorticSmsToFgf2_03hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_forward 1 37 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep3%20%28LK21%29.CNhs13573.12844-137B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12844-137B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_03hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9\ urlLabel FANTOM5 Details:\ pgNA19701 ASW NA19701 pgSnp ASW NA19701 (Complete Genomics) 0 37 0 0 0 127 127 127 0 0 0 varRep 1 longLabel ASW NA19701 (Complete Genomics)\ parent pgSnpCg\ shortLabel ASW NA19701\ subGroups view=C_CG id=CA_div_GS19701 type=SNP\ track pgNA19701\ wgEncodeHaibMethylRrbsBcbrainh11058nBiochainSitesRep1 Brain_BC 1 bed 9 + Brain BC H11058N Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 37 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Brain BC H11058N Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Brain_BC 1\ subGroups cellType=t3BRAINBCH11058N obtainedBy=BioChain treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBcbrainh11058nBiochainSitesRep1\ type bed 9 +\ wgEncodeUwDgfCd4naivewb11970640Hotspots CD4+_Naive Hot broadPeak CD4+ Naive Wb11970640 DNaseI DGF Hotspots from ENCODE/UW 0 37 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CD4+ Naive Wb11970640 DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel CD4+_Naive Hot\ subGroups view=Hotspots cellType=t3CD4NAIVEWB11970640 treatment=aNONE rep=rep1\ track wgEncodeUwDgfCd4naivewb11970640Hotspots\ type broadPeak\ wgEncodeHaibRnaSeqEcc1Bpa14hRawRep1 ECC-1 BPA 1 bigWig 0.210921 561.841003 ECC-1 BPA 4 hr 100 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 37 0 0 0 127 127 127 0 0 0 expression 0 longLabel ECC-1 BPA 4 hr 100 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel ECC-1 BPA 1\ subGroups view=RawSignal cellType=t3ECC1 treatment=BPA14h rep=rep1\ track wgEncodeHaibRnaSeqEcc1Bpa14hRawRep1\ type bigWig 0.210921 561.841003\ wgEncodeUwAffyExonArrayGm12865SimpleSignalRep2 GM12865 2 broadPeak GM12865 Exon-array Signal Rep 2 from ENCODE/UW 0 37 0 0 0 127 127 127 0 0 0 expression 1 longLabel GM12865 Exon-array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel GM12865 2\ subGroups cellType=t3GM12865 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayGm12865SimpleSignalRep2\ type broadPeak\ wgEncodeAwgTfbsHaibGm12878Mta3sc81325V0422111UniPk GM12878 MTA3 narrowPeak GM12878 TFBS Uniform Peaks of MTA3_(SC-81325) from ENCODE/HudsonAlpha/Analysis 1 37 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of MTA3_(SC-81325) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 MTA3\ subGroups tier=a10 cellType=a10GM12878 factor=MTA3 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Mta3sc81325V0422111UniPk\ wgEncodeHaibTfbsGm12878Egr1Pcr2xPkRep3 GM78 Egr-1 PCR2 3 broadPeak GM12878 Egr-1 PCR2x ChIP-seq Peaks Rep 3 from ENCODE/HAIB 3 37 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Egr-1 PCR2x ChIP-seq Peaks Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 Egr-1 PCR2 3\ subGroups view=Peaks factor=EGR1 cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep3\ track wgEncodeHaibTfbsGm12878Egr1Pcr2xPkRep3\ type broadPeak\ wgEncodeSydhTfbsGm12878MaxIggmusPk GM78 Max IgM narrowPeak GM12878 Max IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 37 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Max IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 Max IgM\ subGroups view=Peaks factor=MAX cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878MaxIggmusPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqGm12878NucleolusTotalMinusSignalRep3 GM78 nlus tot - 3 bigWig 1.000000 846987.000000 GM12878 nucleolus total RNA-seq Minus signal Rep 3 from ENCODE/CSHL 2 37 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleolus total RNA-seq Minus signal Rep 3 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel GM78 nlus tot - 3\ subGroups view=MinusSignal cellType=t1GM12878 localization=NUCLEOLUS rnaExtract=TOTAL rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878NucleolusTotalMinusSignalRep3\ type bigWig 1.000000 846987.000000\ wgEncodeBroadHistoneH1hescH2azStdSig H1-hESC H2A.Z bigWig 0.040000 36549.300781 H1-hESC H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 37 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH2azStdSig\ type bigWig 0.040000 36549.300781\ wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UPlusRawRep1V4 H1ES 1x75D + 1 bigWig 0.020000 29585.000000 H1-hESC single read RNA-seq Plus Signal Rep 1 from ENCODE/Caltech 2 37 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC single read RNA-seq Plus Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewPlusSignal off\ shortLabel H1ES 1x75D + 1\ subGroups view=PlusSignal cellType=t1H1HESC readType=r1x75D insertLength=ilNa rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UPlusRawRep1V4\ type bigWig 0.020000 29585.000000\ wgEncodeRikenCageH1hescCytosolPapAlnRep2 H1ES cyto pA+ A 2 bam H1-hESC cytosol polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 37 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC cytosol polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel H1ES cyto pA+ A 2\ subGroups view=Alignments cellType=t1H1HESC localization=cytosol rnaExtract=pAP rep=rep2 rank=rank1\ track wgEncodeRikenCageH1hescCytosolPapAlnRep2\ type bam\ wgEncodeAwgDnaseUwH7hescUniPk H7-hESC DNase narrowPeak H7-hESC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 37 0 0 0 127 127 127 1 0 0 regulation 1 longLabel H7-hESC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel H7-hESC DNase\ subGroups tier=a30 cellType=H7-hESC\ track wgEncodeAwgDnaseUwH7hescUniPk\ wgEncodeOpenChromChipHelas3CmycPk HeLa-S3 cMyc Pk narrowPeak HeLa-S3 cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 37 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel HeLa-S3 cMyc Pk\ subGroups treatment=AANONE view=Peaks factor=CMYC cellType=t2HELAS3\ track wgEncodeOpenChromChipHelas3CmycPk\ type narrowPeak\ wgEncodeUwDnaseHepg2HotspotsRep2 HepG2 Ht 2 broadPeak HepG2 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 37 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HepG2 Ht 2\ subGroups view=Hot cellType=t2HEPG2 rep=rep2 treatment=None\ track wgEncodeUwDnaseHepg2HotspotsRep2\ type broadPeak\ wgEncodeUwTfbsHepg2InputStdRawRep1 HepG2 In Sg 1 bigWig 1.000000 7679.000000 HepG2 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 37 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HepG2 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t2HEPG2 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHepg2InputStdRawRep1\ type bigWig 1.000000 7679.000000\ wgEncodeOpenChromDnaseHepg2Pk HepG2 Pk narrowPeak HepG2 DNaseI HS Peaks from ENCODE/Duke 3 37 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel HepG2 Pk\ subGroups view=Peaks cellType=t2HEPG2 treatment=zNONE\ track wgEncodeOpenChromDnaseHepg2Pk\ type narrowPeak\ wgEncodeUwRepliSeqHepg2PkRep1 HepG2 Pk 1 bed 9 HepG2-Phase Repli-seq Peaks Rep 1 from ENCODE/UW 0 37 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2-Phase Repli-seq Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPeaks off\ shortLabel HepG2 Pk 1\ subGroups view=v2Peaks cellType=t2HEPG2 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqHepg2PkRep1\ type bed 9\ wgEncodeHaibGenotypeHipeRegionsRep1 HIPEpiC 1 bed 9 + HIPEpiC Copy number variants Replicate 1 from ENCODE/HAIB 0 37 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HIPEpiC Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HIPEpiC 1\ subGroups cellType=t3HIPEPIC obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeHipeRegionsRep1\ type bed 9 +\ wgEncodeHaibMethyl450HmecSitesRep1 HMEC bed 9 HMEC Methylation 450K Bead Array from ENCODE/HAIB 1 37 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel HMEC\ subGroups cellType=t3HMEC obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450HmecSitesRep1\ type bed 9\ wgEncodeCshlShortRnaSeqK562CellShorttotalTapContigs K562 cell TAP C bed 6 K562 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 37 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs on\ shortLabel K562 cell TAP C\ subGroups view=Contigs cellType=t1K562 localization=CELL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqK562CellShorttotalTapContigs\ type bed 6\ wgEncodeUwHistoneK562H3k36me3StdRawRep2 K562 H3K36M3 Sg 2 bigWig 1.000000 9619.000000 K562 H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 37 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig on\ shortLabel K562 H3K36M3 Sg 2\ subGroups view=zRSig factor=H3K36ME3 cellType=t1K562 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneK562H3k36me3StdRawRep2\ type bigWig 1.000000 9619.000000\ wgEncodeSunyRipSeqK562RipinputSigRep1 K562 Input 1 bigWig 0.000000 88877.484375 K562 RIP-Input RIP-seq Signal Rep 1 from ENCODE/SUNY 2 37 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 RIP-Input RIP-seq Signal Rep 1 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewSignal off\ shortLabel K562 Input 1\ subGroups view=Signal factor=ripInput cellType=t1K562 rep=rep1\ track wgEncodeSunyRipSeqK562RipinputSigRep1\ type bigWig 0.000000 88877.484375\ wgEncodeDukeAffyExonMcf7RandshrnaSimpleSignalRep2 MCF-7 RANDsh 2 bigBed 6 + MCF-7 Randomized shRNA control Exon array Signal Rep 2 from ENCODE/Duke 0 37 0 0 0 127 127 127 1 0 0 expression 1 longLabel MCF-7 Randomized shRNA control Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel MCF-7 RANDsh 2\ subGroups cellType=t2MCF7 treatment=RANDSHRNA rep=rep2\ track wgEncodeDukeAffyExonMcf7RandshrnaSimpleSignalRep2\ type bigBed 6 +\ wgEncodeOpenChromFaireMcf7HypoxlacPk MCF7 hypox FAI Pk narrowPeak MCF-7 Hypoxia LacAcid FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 37 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 Hypoxia LacAcid FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel MCF7 hypox FAI Pk\ subGroups view=Peaks cellType=t2MCF7 treatment=HYPOXLAC\ track wgEncodeOpenChromFaireMcf7HypoxlacPk\ type narrowPeak\ dhcHumDerDenAncNonsynFixedDbSnp Nonsyn FxS bigBed 4 + Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: Non-synonymous 0 37 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: Non-synonymous\ parent dhcHumDerDenAncEns\ shortLabel Nonsyn FxS\ subGroups view=Ens subset=Nonsyn freq=FixedDbSnp\ track dhcHumDerDenAncNonsynFixedDbSnp\ wgEncodeSydhHistonePanc1H3k04me1bUcdPk PANC-1 H3K4me1 narrowPeak PANC-1 H3K4me1 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 37 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 H3K4me1 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks off\ shortLabel PANC-1 H3K4me1\ subGroups view=Peaks factor=H3K04ME1 cellType=cPANC1 control=UCD treatment=NONE\ track wgEncodeSydhHistonePanc1H3k04me1bUcdPk\ type narrowPeak\ gtexEqtlTissueStomach stomach bed 9 + Expression QTL in Stomach from GTEx V6 0 37 255 211 155 255 233 205 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 255,211,155\ idInUrlSql select gene from gtexEqtlTissueStomach where name='%s'\ longLabel Expression QTL in Stomach from GTEx V6\ parent gtexEqtlTissue on\ shortLabel stomach\ track gtexEqtlTissueStomach\ Agilent_Human_Exon_V6_Regions SureSel. V6 T bigBed Agilent - SureSelect All Exon V6 r2 Target Regions 0 37 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S07604514_Regions.bb\ color 120,94,240\ longLabel Agilent - SureSelect All Exon V6 r2 Target Regions\ parent exomeProbesets off\ shortLabel SureSel. V6 T\ track Agilent_Human_Exon_V6_Regions\ type bigBed\ netLoxAfr3 Elephant Net netAlign loxAfr3 chainLoxAfr3 Elephant (Jul. 2009 (Broad/loxAfr3)) Alignment Net 1 38 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Elephant (Jul. 2009 (Broad/loxAfr3)) Alignment Net\ otherDb loxAfr3\ parent placentalChainNetViewnet on\ shortLabel Elephant Net\ subGroups view=net species=s107 clade=c07\ track netLoxAfr3\ type netAlign loxAfr3 chainLoxAfr3\ wgEncodeGisRnaPetA549CellPapMinusRawRep3 A549 cell pA+ - 3 bigWig 1.000000 3376640.000000 A549 whole cell polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS 2 38 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel A549 cell pA+ - 3\ subGroups view=v2MinusRawSignal cellType=bA549 cloned=Free localization=cell rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetA549CellPapMinusRawRep3\ type bigWig 1.000000 3376640.000000\ encTfChipPkENCFF319HLW A549 RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in A549 from ENCODE 3 (ENCFF319HLW) 1 38 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in A549 from ENCODE 3 (ENCFF319HLW)\ parent encTfChipPk off\ shortLabel A549 RCOR1\ subGroups cellType=A549 factor=RCOR1\ track encTfChipPkENCFF319HLW\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_ctss_rev AorticSmsToFgf2_03hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_reverse 0 38 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep3%20%28LK21%29.CNhs13573.12844-137B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12844-137B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_03hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_tpm_rev AorticSmsToFgf2_03hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_reverse 1 38 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep3%20%28LK21%29.CNhs13573.12844-137B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12844-137B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_03hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9\ urlLabel FANTOM5 Details:\ pgNA19701indel ASW NA19701 indel pgSnp ASW NA19701 indel (Complete Genomics) 0 38 0 0 0 127 127 127 0 0 0 varRep 1 longLabel ASW NA19701 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel ASW NA19701 indel\ subGroups view=C_CG id=CA_div_GS19701 type=Indel\ track pgNA19701indel\ wgEncodeHaibMethylRrbsBcbrainh11058nBiochainSitesRep2 Brain_BC 2 bed 9 + Brain BC H11058N Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 38 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Brain BC H11058N Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Brain_BC 2\ subGroups cellType=t3BRAINBCH11058N obtainedBy=BioChain treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBcbrainh11058nBiochainSitesRep2\ type bed 9 +\ wgEncodeUwDgfCd4naivewb11970640Pk CD4+_Naive Pk narrowPeak CD4+ Naive Wb11970640 DNaseI DGF Peaks from ENCODE/UW 0 38 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CD4+ Naive Wb11970640 DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel CD4+_Naive Pk\ subGroups view=Peaks cellType=t3CD4NAIVEWB11970640 treatment=aNONE rep=rep1\ track wgEncodeUwDgfCd4naivewb11970640Pk\ type narrowPeak\ wgEncodeHaibRnaSeqEcc1Bpa14hAlnRep1 ECC-1 BPA 1 bam ECC-1 BPA 4 hr 100 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 38 0 0 0 127 127 127 0 0 0 expression 1 longLabel ECC-1 BPA 4 hr 100 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel ECC-1 BPA 1\ subGroups view=Alignments cellType=t3ECC1 treatment=BPA14h rep=rep1\ track wgEncodeHaibRnaSeqEcc1Bpa14hAlnRep1\ type bam\ wgEncodeAwgTfbsSydhGm12878Mxi1IggmusUniPk GM12878 MXI1 narrowPeak GM12878 TFBS Uniform Peaks of Mxi1_(AF4185) from ENCODE/Stanford/Analysis 1 38 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of Mxi1_(AF4185) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 MXI1\ subGroups tier=a10 cellType=a10GM12878 factor=MXI1 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Mxi1IggmusUniPk\ wgEncodeHaibTfbsGm12878Egr1Pcr2xRawRep3 GM78 Egr-1 PCR2 3 bigWig 0.148748 119.817001 GM12878 Egr-1 PCR2x ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB 2 38 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Egr-1 PCR2x ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 Egr-1 PCR2 3\ subGroups view=RawSignal factor=EGR1 cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep3\ track wgEncodeHaibTfbsGm12878Egr1Pcr2xRawRep3\ type bigWig 0.148748 119.817001\ wgEncodeSydhTfbsGm12878MaxIggmusSig GM78 Max IgM bigWig 1.000000 15789.000000 GM12878 Max IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 38 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Max IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 Max IgM\ subGroups view=Signal factor=MAX cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878MaxIggmusSig\ type bigWig 1.000000 15789.000000\ wgEncodeCshlLongRnaSeqGm12878NucleolusTotalMinusSignalRep4 GM78 nlus tot - 4 bigWig 1.000000 634244.000000 GM12878 nucleolus total RNA-seq Minus signal Rep 4 from ENCODE/CSHL 2 38 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleolus total RNA-seq Minus signal Rep 4 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel GM78 nlus tot - 4\ subGroups view=MinusSignal cellType=t1GM12878 localization=NUCLEOLUS rnaExtract=TOTAL rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878NucleolusTotalMinusSignalRep4\ type bigWig 1.000000 634244.000000\ wgEncodeBroadHistoneH1hescH3k4me1StdPk H1-hESC H3K4m1 broadPeak H1-hESC H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 38 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks\ shortLabel H1-hESC H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k4me1StdPk\ type broadPeak\ wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UPlusRawRep2V4 H1ES 1x75D + 2 bigWig 0.018500 42720.582031 H1-hESC single read RNA-seq Plus Signal Rep 2 from ENCODE/Caltech 2 38 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC single read RNA-seq Plus Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewPlusSignal off\ shortLabel H1ES 1x75D + 2\ subGroups view=PlusSignal cellType=t1H1HESC readType=r1x75D insertLength=ilNa rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UPlusRawRep2V4\ type bigWig 0.018500 42720.582031\ wgEncodeRikenCageH1hescNucleusPapTssHmm H1ES nucl pA+ bed 6 H1-hESC nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 38 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel H1ES nucl pA+\ subGroups view=TssHmm cellType=t1H1HESC localization=nucleus rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageH1hescNucleusPapTssHmm\ type bed 6\ wgEncodeUwAffyExonArrayH7esSimpleSignalRep1 H7-hESC 1 broadPeak H7-hESC Exon array Signal Rep 1 from ENCODE/UW 0 38 0 0 0 127 127 127 0 0 0 expression 1 longLabel H7-hESC Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel H7-hESC 1\ subGroups cellType=t3H7HESC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayH7esSimpleSignalRep1\ type broadPeak\ wgEncodeAwgDnaseDukeH9esUniPk H9ES DNase narrowPeak H9ES DNaseI HS Uniform Peaks from ENCODE/Analysis 1 38 0 0 0 127 127 127 1 0 0 regulation 1 longLabel H9ES DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel H9ES DNase\ subGroups tier=a30 cellType=H9ES\ track wgEncodeAwgDnaseDukeH9esUniPk\ wgEncodeOpenChromChipHelas3CmycSig HeLa-S3 cMyc DS bigWig 0.000000 0.824800 HeLa-S3 cMyc TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 38 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 cMyc TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel HeLa-S3 cMyc DS\ subGroups treatment=AANONE view=SIG factor=CMYC cellType=t2HELAS3\ track wgEncodeOpenChromChipHelas3CmycSig\ type bigWig 0.000000 0.824800\ wgEncodeOpenChromDnaseHepg2Sig HepG2 DS bigWig 0.000000 2.203900 HepG2 DNaseI HS Density Signal from ENCODE/Duke 2 38 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel HepG2 DS\ subGroups view=SIG cellType=t2HEPG2 treatment=zNONE\ track wgEncodeOpenChromDnaseHepg2Sig\ type bigWig 0.000000 2.203900\ wgEncodeUwDnaseHepg2PkRep2 HepG2 Pk 2 narrowPeak HepG2 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 38 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HepG2 Pk 2\ subGroups view=Peaks cellType=t2HEPG2 rep=rep2 treatment=None\ track wgEncodeUwDnaseHepg2PkRep2\ type narrowPeak\ wgEncodeUwRepliSeqHepg2ValleysRep1 HepG2 Vly 1 bed 9 HepG2-Phase Repli-seq Valleys Rep 1 from ENCODE/UW 0 38 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2-Phase Repli-seq Valleys Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewValleys off\ shortLabel HepG2 Vly 1\ subGroups view=v3Valleys cellType=t2HEPG2 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqHepg2ValleysRep1\ type bed 9\ wgEncodeHaibGenotypeHipeRegionsRep2 HIPEpiC 2 bed 9 + HIPEpiC Copy number variants Replicate 2 from ENCODE/HAIB 0 38 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HIPEpiC Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HIPEpiC 2\ subGroups cellType=t3HIPEPIC obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeHipeRegionsRep2\ type bed 9 +\ wgEncodeHaibMethyl450HnpceSitesRep1 HNPCEpiC bed 9 HNPCEpiC Methylation 450K Bead Array from ENCODE/HAIB 1 38 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HNPCEpiC Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel HNPCEpiC\ subGroups cellType=t3HNPCEPIC obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450HnpceSitesRep1\ type bed 9\ wgEncodeUwTfbsHuvecCtcfStdHotspotsRep1 HUVEC CTCF Ht 1 broadPeak HUVEC CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 38 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HUVEC CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t2HUVEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHuvecCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeCshlShortRnaSeqK562CellShorttotalTapMinusRawRep1 K562 cell TAP - 1 bigWig 1.000000 1822368.000000 K562 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 38 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal on\ shortLabel K562 cell TAP - 1\ subGroups view=MinusSignal cellType=t1K562 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqK562CellShorttotalTapMinusRawRep1\ type bigWig 1.000000 1822368.000000\ wgEncodeUwHistoneK562InputStdRawRep1 K562 In Sg 1 bigWig 1.000000 13124.000000 K562 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 38 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig on\ shortLabel K562 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t1K562 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneK562InputStdRawRep1\ type bigWig 1.000000 13124.000000\ wgEncodeSunyRipSeqK562RipinputSigRep2 K562 Input 2 bigWig 0.000000 88306.453125 K562 RIP-Input RIP-seq Signal Rep 2 from ENCODE/SUNY 2 38 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 RIP-Input RIP-seq Signal Rep 2 from ENCODE/SUNY\ parent wgEncodeSunyRipSeqViewSignal off\ shortLabel K562 Input 2\ subGroups view=Signal factor=ripInput cellType=t1K562 rep=rep2\ track wgEncodeSunyRipSeqK562RipinputSigRep2\ type bigWig 0.000000 88306.453125\ wgEncodeDukeAffyExonMcf7RandshrnaSimpleSignalRep3 MCF-7 RANDsh 3 bigBed 6 + MCF-7 Randomized shRNA control Exon array Signal Rep 3 from ENCODE/Duke 0 38 0 0 0 127 127 127 1 0 0 expression 1 longLabel MCF-7 Randomized shRNA control Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel MCF-7 RANDsh 3\ subGroups cellType=t2MCF7 treatment=RANDSHRNA rep=rep3\ track wgEncodeDukeAffyExonMcf7RandshrnaSimpleSignalRep3\ type bigBed 6 +\ wgEncodeOpenChromFaireMcf7HypoxlacSig MCF7 hypox FAI DS bigWig 0.000000 0.601300 MCF-7 Hypoxia FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 38 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 Hypoxia FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel MCF7 hypox FAI DS\ subGroups view=SIG cellType=t2MCF7 treatment=HYPOXLAC\ track wgEncodeOpenChromFaireMcf7HypoxlacSig\ type bigWig 0.000000 0.601300\ dhcHumDerDenAncNonsynHighFreq Nonsyn HiF bigBed 4 + Modern Human Derived (HighFreq), Denisova Ancestral: Non-synonymous 0 38 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (HighFreq), Denisova Ancestral: Non-synonymous\ parent dhcHumDerDenAncEns\ shortLabel Nonsyn HiF\ subGroups view=Ens subset=Nonsyn freq=HighFreq\ track dhcHumDerDenAncNonsynHighFreq\ wgEncodeSydhHistonePanc1H3k04me1bUcdSig PANC-1 H3K4me1 bigWig 1.000000 19459.000000 PANC-1 H3K4me1 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 38 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 H3K4me1 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel PANC-1 H3K4me1\ subGroups view=Signal factor=H3K04ME1 cellType=cPANC1 control=UCD treatment=NONE\ track wgEncodeSydhHistonePanc1H3k04me1bUcdSig\ type bigWig 1.000000 19459.000000\ Agilent_Human_Exon_V6_COSMIC_Covered SureSel. V6+COSMIC P bigBed Agilent - SureSelect All Exon V6 + COSMIC r2 Covered by Probes 0 38 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S07604715_Covered.bb\ color 120,94,240\ longLabel Agilent - SureSelect All Exon V6 + COSMIC r2 Covered by Probes\ parent exomeProbesets off\ shortLabel SureSel. V6+COSMIC P\ track Agilent_Human_Exon_V6_COSMIC_Covered\ type bigBed\ gtexEqtlTissueTestis testis bed 9 + Expression QTL in Testis from GTEx V6 0 38 166 166 166 210 210 210 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 166,166,166\ idInUrlSql select gene from gtexEqtlTissueTestis where name='%s'\ longLabel Expression QTL in Testis from GTEx V6\ parent gtexEqtlTissue on\ shortLabel testis\ track gtexEqtlTissueTestis\ wgEncodeGisRnaPetA549CellPapMinusRawRep4 A549 cell pA+ - 4 bigWig 1.000000 3622800.000000 A549 whole cell polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS 2 39 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel A549 cell pA+ - 4\ subGroups view=v2MinusRawSignal cellType=bA549 cloned=Free localization=cell rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetA549CellPapMinusRawRep4\ type bigWig 1.000000 3622800.000000\ wgEncodeUwHistoneA549H3k04me3StdHotspotsRep1 A549 H3K4M3 Ht 1 broadPeak A549 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 39 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel A549 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t2A549 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneA549H3k04me3StdHotspotsRep1\ type broadPeak\ encTfChipPkENCFF136RBA A549 REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in A549 from ENCODE 3 (ENCFF136RBA) 1 39 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in A549 from ENCODE 3 (ENCFF136RBA)\ parent encTfChipPk off\ shortLabel A549 REST 1\ subGroups cellType=A549 factor=REST\ track encTfChipPkENCFF136RBA\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_ctss_fwd AorticSmsToFgf2_05hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_forward 0 39 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep1%20%28LK25%29.CNhs13347.12650-134H4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12650-134H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_tpm_fwd AorticSmsToFgf2_05hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_forward 1 39 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep1%20%28LK25%29.CNhs13347.12650-134H4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12650-134H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4\ urlLabel FANTOM5 Details:\ pgNA19703 ASW NA19703 pgSnp ASW NA19703 (Complete Genomics) 0 39 0 0 0 127 127 127 0 0 0 varRep 1 longLabel ASW NA19703 (Complete Genomics)\ parent pgSnpCg\ shortLabel ASW NA19703\ subGroups view=C_CG id=CA_div_GS19703 type=SNP\ track pgNA19703\ wgEncodeHaibMethylRrbsBcbreast0203015BiochainSitesRep1 Breast_BC 1 bed 9 + Breast BC 02-03015 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 39 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Breast BC 02-03015 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Breast_BC 1\ subGroups cellType=t3BREASTBC0203015 obtainedBy=BioChain treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBcbreast0203015BiochainSitesRep1\ type bed 9 +\ wgEncodeUwDgfCd4naivewb11970640Sig CD4+_Naive Sig bigWig 1.000000 31841.000000 CD4+ Naive Wb11970640 DNaseI DGF Per-base Signal from ENCODE/UW 2 39 0 0 0 127 127 127 0 0 0 regulation 0 longLabel CD4+ Naive Wb11970640 DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel CD4+_Naive Sig\ subGroups view=Signal cellType=t3CD4NAIVEWB11970640 treatment=aNONE rep=rep1\ track wgEncodeUwDgfCd4naivewb11970640Sig\ type bigWig 1.000000 31841.000000\ wgEncodeHaibRnaSeqEcc1Bpa14hRawRep2 ECC-1 BPA 2 bigWig 0.206326 724.461975 ECC-1 BPA 4 hr 100 nM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 39 0 0 0 127 127 127 0 0 0 expression 0 longLabel ECC-1 BPA 4 hr 100 nM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel ECC-1 BPA 2\ subGroups view=RawSignal cellType=t3ECC1 treatment=BPA14h rep=rep2\ track wgEncodeHaibRnaSeqEcc1Bpa14hRawRep2\ type bigWig 0.206326 724.461975\ wgEncodeAwgTfbsUtaGm12878CmycUniPk GM12878 MYC narrowPeak GM12878 TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis 1 39 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 MYC\ subGroups tier=a10 cellType=a10GM12878 factor=MYC lab=UT-A\ track wgEncodeAwgTfbsUtaGm12878CmycUniPk\ wgEncodeHaibTfbsGm12878Egr1V0416101PkRep1 GM78 Egr-1 V101 1 broadPeak GM12878 Egr-1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 39 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Egr-1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 Egr-1 V101 1\ subGroups view=Peaks factor=EGR1 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Egr1V0416101PkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878Mazab85725IggmusPk GM78 MAZ IgM narrowPeak GM12878 MAZ IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 39 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 MAZ IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 MAZ IgM\ subGroups view=Peaks factor=MAZAB85725 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Mazab85725IggmusPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqGm12878NucleolusTotalPlusSignalRep3 GM78 nlus tot + 3 bigWig 1.000000 407730.000000 GM12878 nucleolus total RNA-seq Plus signal Rep 3 from ENCODE/CSHL 2 39 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleolus total RNA-seq Plus signal Rep 3 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel GM78 nlus tot + 3\ subGroups view=PlusSignal cellType=t1GM12878 localization=NUCLEOLUS rnaExtract=TOTAL rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878NucleolusTotalPlusSignalRep3\ type bigWig 1.000000 407730.000000\ wgEncodeBroadHistoneH1hescH3k4me1StdSig H1-hESC H3K4m1 bigWig 0.040000 10892.639648 H1-hESC H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 39 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal\ shortLabel H1-hESC H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k4me1StdSig\ type bigWig 0.040000 10892.639648\ wgEncodeCaltechRnaSeqH1hescR1x75dSplicesRep1V2 H1ES 1x75D Sp 1 bam H1-hESC single read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 39 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC single read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel H1ES 1x75D Sp 1\ subGroups view=Splices cellType=t1H1HESC insertLength=ilNa readType=r1x75D rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR1x75dSplicesRep1V2\ type bam\ wgEncodeRikenCageH1hescNucleusPapPlusSignalRep2 H1ES nucl pA+ + 2 bigWig 0.040000 7536.419922 H1-hESC nucleus polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 39 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC nucleus polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel H1ES nucl pA+ + 2\ subGroups view=PlusRawSignal cellType=t1H1HESC localization=nucleus rnaExtract=pAP rep=rep2 rank=rank1\ track wgEncodeRikenCageH1hescNucleusPapPlusSignalRep2\ type bigWig 0.040000 7536.419922\ wgEncodeUwAffyExonArrayH7esDiffa14dSimpleSignalRep1 H7-hESC 14d 1 broadPeak H7-hESC differentiated 14 d Exon Array Signal Rep 1 from ENCODE/UW 0 39 0 0 0 127 127 127 0 0 0 expression 1 longLabel H7-hESC differentiated 14 d Exon Array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel H7-hESC 14d 1\ subGroups cellType=t3H7HESC treatment=DIFFA14D rep=rep1\ track wgEncodeUwAffyExonArrayH7esDiffa14dSimpleSignalRep1\ type broadPeak\ wgEncodeAwgDnaseUwHahUniPk HA-h DNase narrowPeak HA-h DNaseI HS Uniform Peaks from ENCODE/Analysis 1 39 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HA-h DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HA-h DNase\ subGroups tier=a30 cellType=HA-h\ track wgEncodeAwgDnaseUwHahUniPk\ wgEncodeOpenChromChipHelas3CmycBaseOverlapSignal HeLa-S3 cMyc OS bigWig 0.000000 183.000000 HeLa-S3 cMyc TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 39 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 cMyc TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel HeLa-S3 cMyc OS\ subGroups treatment=AANONE view=SIGBO factor=CMYC cellType=t2HELAS3\ track wgEncodeOpenChromChipHelas3CmycBaseOverlapSignal\ type bigWig 0.000000 183.000000\ wgEncodeOpenChromDnaseHepg2BaseOverlapSignal HepG2 OS bigWig 0.000000 274.000000 HepG2 DNaseI HS Overlap Signal from ENCODE/Duke 2 39 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel HepG2 OS\ subGroups view=SIGBO cellType=t2HEPG2 treatment=zNONE\ track wgEncodeOpenChromDnaseHepg2BaseOverlapSignal\ type bigWig 0.000000 274.000000\ wgEncodeUwDnaseHepg2RawRep2 HepG2 Sg 2 bigWig 1.000000 11649.000000 HepG2 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 39 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HepG2 Sg 2\ subGroups view=zRSig cellType=t2HEPG2 rep=rep2 treatment=None\ track wgEncodeUwDnaseHepg2RawRep2\ type bigWig 1.000000 11649.000000\ wgEncodeUwRepliSeqHepg2WaveSignalRep1 HepG2 Ws 1 bigWig -7.742796 88.110779 HepG2 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW 2 39 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewWaveSignal\ shortLabel HepG2 Ws 1\ subGroups view=v4WaveSignal cellType=t2HEPG2 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqHepg2WaveSignalRep1\ type bigWig -7.742796 88.110779\ wgEncodeHaibGenotypeHl60RegionsRep1 HL-60 1 bed 9 + HL-60 Copy number variants Replicate 1 from ENCODE/HAIB 0 39 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HL-60 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HL-60 1\ subGroups cellType=t3HL60 obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeHl60RegionsRep1\ type bed 9 +\ wgEncodeHaibMethyl450HpaeSitesRep1 HPAEpiC bed 9 HPAEpiC Methylation 450K Bead Array from ENCODE/HAIB 1 39 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAEpiC Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel HPAEpiC\ subGroups cellType=t3HPAEPIC obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450HpaeSitesRep1\ type bed 9\ wgEncodeUwTfbsHuvecCtcfStdPkRep1 HUVEC CTCF Pk 1 narrowPeak HUVEC CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 39 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HUVEC CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t2HUVEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHuvecCtcfStdPkRep1\ type narrowPeak\ wgEncodeCshlShortRnaSeqK562CellShorttotalTapMinusRawRep2 K562 cell TAP - 2 bigWig 1.000000 2003121.000000 K562 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 39 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel K562 cell TAP - 2\ subGroups view=MinusSignal cellType=t1K562 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqK562CellShorttotalTapMinusRawRep2\ type bigWig 1.000000 2003121.000000\ wgEncodeDukeAffyExonMcf7VehSimpleSignalRep1V2 MCF-7 Veh 1 bigBed 6 + MCF-7 Vehicle Exon array Signal Rep 1 from ENCODE/Duke 0 39 0 0 0 127 127 127 1 0 0 expression 1 longLabel MCF-7 Vehicle Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel MCF-7 Veh 1\ subGroups cellType=t2MCF7 treatment=VEH rep=rep1\ track wgEncodeDukeAffyExonMcf7VehSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeOpenChromFaireMcf7HypoxlacBaseOverlapSignal MCF7 hypox FAI OS bigWig 0.000000 1609.000000 MCF-7 Hypoxia FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 39 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 Hypoxia FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel MCF7 hypox FAI OS\ subGroups view=SIGBO cellType=t2MCF7 treatment=HYPOXLAC\ track wgEncodeOpenChromFaireMcf7HypoxlacBaseOverlapSignal\ type bigWig 0.000000 1609.000000\ wgEncodeSydhHistonePanc1H3k04me3bUcdPk PANC-1 H3K4me3 narrowPeak PANC-1 H3K4me3 Histone Modifications by ChIP-seq Peaks from ENCODE/SYDH 3 39 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 H3K4me3 Histone Modifications by ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks off\ shortLabel PANC-1 H3K4me3\ subGroups view=Peaks factor=H3K04ME3B cellType=cPANC1 control=UCD treatment=NONE\ track wgEncodeSydhHistonePanc1H3k04me3bUcdPk\ type narrowPeak\ dhcHumDerDenAncSpliceFixed Splice Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: Splice 0 39 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: Splice\ parent dhcHumDerDenAncEns\ shortLabel Splice Fxd\ subGroups view=Ens subset=Splice freq=Fixed\ track dhcHumDerDenAncSpliceFixed\ Agilent_Human_Exon_V6_COSMIC_Regions SureSel. V6+COSMIC T bigBed Agilent - SureSelect All Exon V6 + COSMIC r2 Target Regions 0 39 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S07604715_Regions.bb\ color 120,94,240\ longLabel Agilent - SureSelect All Exon V6 + COSMIC r2 Target Regions\ parent exomeProbesets off\ shortLabel SureSel. V6+COSMIC T\ track Agilent_Human_Exon_V6_COSMIC_Regions\ type bigBed\ gtexEqtlTissueThyroid thyroid bed 9 + Expression QTL in Thyroid from GTEx V6 0 39 0 139 69 127 197 162 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 0,139,69\ idInUrlSql select gene from gtexEqtlTissueThyroid where name='%s'\ longLabel Expression QTL in Thyroid from GTEx V6\ parent gtexEqtlTissue on\ shortLabel thyroid\ track gtexEqtlTissueThyroid\ wgEncodeGisRnaPetA549CellPapPlusRawRep3 A549 cell pA+ + 3 bigWig 1.000000 2993260.000000 A549 whole cell polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS 2 40 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel A549 cell pA+ + 3\ subGroups view=v2PlusRawSignal cellType=bA549 cloned=Free localization=cell rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetA549CellPapPlusRawRep3\ type bigWig 1.000000 2993260.000000\ wgEncodeUwHistoneA549H3k04me3StdPkRep1 A549 H3K4M3 Pk 1 narrowPeak A549 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 40 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel A549 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t2A549 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneA549H3k04me3StdPkRep1\ type narrowPeak\ encTfChipPkENCFF188XRD A549 REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in A549 from ENCODE 3 (ENCFF188XRD) 1 40 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in A549 from ENCODE 3 (ENCFF188XRD)\ parent encTfChipPk off\ shortLabel A549 REST 2\ subGroups cellType=A549 factor=REST\ track encTfChipPkENCFF188XRD\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_ctss_rev AorticSmsToFgf2_05hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_reverse 0 40 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep1%20%28LK25%29.CNhs13347.12650-134H4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12650-134H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_tpm_rev AorticSmsToFgf2_05hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_reverse 1 40 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep1%20%28LK25%29.CNhs13347.12650-134H4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12650-134H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4\ urlLabel FANTOM5 Details:\ pgNA19703indel ASW NA19703 indel pgSnp ASW NA19703 indel (Complete Genomics) 0 40 0 0 0 127 127 127 0 0 0 varRep 1 longLabel ASW NA19703 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel ASW NA19703 indel\ subGroups view=C_CG id=CA_div_GS19703 type=Indel\ track pgNA19703indel\ wgEncodeHaibMethylRrbsBcbreast0203015BiochainSitesRep2 Breast BC 2 bed 9 + Breast BC 02-03015 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 40 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Breast BC 02-03015 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Breast BC 2\ subGroups cellType=t3BREASTBC0203015 obtainedBy=BioChain treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBcbreast0203015BiochainSitesRep2\ type bed 9 +\ wgEncodeUwDgfCd4naivewb11970640Raw CD4+_Naive Raw bigWig 1.000000 200613.000000 CD4+ Naive Wb11970640 DNaseI DGF Raw Signal from ENCODE/UW 0 40 0 0 0 127 127 127 0 0 0 regulation 0 longLabel CD4+ Naive Wb11970640 DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel CD4+_Naive Raw\ subGroups view=zRaw cellType=t3CD4NAIVEWB11970640 treatment=aNONE rep=rep1\ track wgEncodeUwDgfCd4naivewb11970640Raw\ type bigWig 1.000000 200613.000000\ wgEncodeHaibRnaSeqEcc1Bpa14hAlnRep2 ECC-1 BPA 2 bam ECC-1 BPA 4 hr 100 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 40 0 0 0 127 127 127 0 0 0 expression 1 longLabel ECC-1 BPA 4 hr 100 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel ECC-1 BPA 2\ subGroups view=Alignments cellType=t3ECC1 treatment=BPA14h rep=rep2\ track wgEncodeHaibRnaSeqEcc1Bpa14hAlnRep2\ type bam\ wgEncodeAwgTfbsHaibGm12878Nfatc1sc17834V0422111UniPk GM12878 NFATC1 narrowPeak GM12878 TFBS Uniform Peaks of NFATC1_(SC-17834) from ENCODE/HudsonAlpha/Analysis 1 40 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of NFATC1_(SC-17834) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 NFATC1\ subGroups tier=a10 cellType=a10GM12878 factor=NFATC1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Nfatc1sc17834V0422111UniPk\ wgEncodeHaibTfbsGm12878Egr1V0416101RawRep1 GM78 Egr-1 V101 1 bigWig 0.224233 153.487000 GM12878 Egr-1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 40 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Egr-1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 Egr-1 V101 1\ subGroups view=RawSignal factor=EGR1 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Egr1V0416101RawRep1\ type bigWig 0.224233 153.487000\ wgEncodeSydhTfbsGm12878Mazab85725IggmusSig GM78 MAZ IgM bigWig 1.000000 12600.000000 GM12878 MAZ IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 40 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 MAZ IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 MAZ IgM\ subGroups view=Signal factor=MAZAB85725 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Mazab85725IggmusSig\ type bigWig 1.000000 12600.000000\ wgEncodeCshlLongRnaSeqGm12878NucleolusTotalPlusSignalRep4 GM78 nlus tot + 4 bigWig 1.000000 425581.000000 GM12878 nucleolus total RNA-seq Plus signal Rep 4 from ENCODE/CSHL 2 40 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleolus total RNA-seq Plus signal Rep 4 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel GM78 nlus tot + 4\ subGroups view=PlusSignal cellType=t1GM12878 localization=NUCLEOLUS rnaExtract=TOTAL rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878NucleolusTotalPlusSignalRep4\ type bigWig 1.000000 425581.000000\ wgEncodeBroadHistoneH1hescH3k4me2StdPk H1-hESC H3K4m2 broadPeak H1-hESC H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 40 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k4me2StdPk\ type broadPeak\ wgEncodeCaltechRnaSeqH1hescR1x75dSplicesRep2V2 H1ES 1x75D Sp 2 bam H1-hESC single read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 40 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC single read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel H1ES 1x75D Sp 2\ subGroups view=Splices cellType=t1H1HESC insertLength=ilNa readType=r1x75D rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqH1hescR1x75dSplicesRep2V2\ type bam\ wgEncodeRikenCageH1hescNucleusPapMinusSignalRep2 H1ES nucl pA+ - 2 bigWig 0.040000 6403.740234 H1-hESC nucleus polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 40 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC nucleus polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel H1ES nucl pA+ - 2\ subGroups view=MinusRawSignal cellType=t1H1HESC localization=nucleus rnaExtract=pAP rep=rep2 rank=rank1\ track wgEncodeRikenCageH1hescNucleusPapMinusSignalRep2\ type bigWig 0.040000 6403.740234\ wgEncodeUwAffyExonArrayH7esDiffa2dSimpleSignalRep1 H7-hESC 2d 1 broadPeak H7-hESC differentiated 2 d Exon Array Signal Rep 1 from ENCODE/UW 0 40 0 0 0 127 127 127 0 0 0 expression 1 longLabel H7-hESC differentiated 2 d Exon Array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel H7-hESC 2d 1\ subGroups cellType=t3H7HESC treatment=DIFFA2D rep=rep1\ track wgEncodeUwAffyExonArrayH7esDiffa2dSimpleSignalRep1\ type broadPeak\ wgEncodeAwgDnaseUwHaspUniPk HA-sp DNase narrowPeak HA-sp DNaseI HS Uniform Peaks from ENCODE/Analysis 1 40 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HA-sp DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HA-sp DNase\ subGroups tier=a30 cellType=HA-sp\ track wgEncodeAwgDnaseUwHaspUniPk\ wgEncodeOpenChromChipHelas3CtcfPk HeLa-S3 CTCF Pk narrowPeak HeLa-S3 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 40 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel HeLa-S3 CTCF Pk\ subGroups treatment=AANONE view=Peaks factor=CTCF cellType=t2HELAS3\ track wgEncodeOpenChromChipHelas3CtcfPk\ type narrowPeak\ wgEncodeUwRepliSeqHepg2SumSignalRep1 HepG2 Sd 1 bigWig 1.000000 2691.000000 HepG2 Repli-seq Summed Densities Rep 1 from ENCODE/UW 0 40 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Repli-seq Summed Densities Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewSumSignal off\ shortLabel HepG2 Sd 1\ subGroups view=v5SumSignal cellType=t2HEPG2 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqHepg2SumSignalRep1\ type bigWig 1.000000 2691.000000\ wgEncodeHaibGenotypeHmecRegionsRep2 HMEC 1 bed 9 + HMEC Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB 0 40 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HMEC Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HMEC 1\ subGroups cellType=t3HMEC obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeHmecRegionsRep2\ type bed 9 +\ wgEncodeHaibMethyl450HrceSitesRep1 HRCEpiC bed 9 HRCEpiC Methylation 450K Bead Array from ENCODE/HAIB 1 40 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRCEpiC Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel HRCEpiC\ subGroups cellType=t3HRCEPIC obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450HrceSitesRep1\ type bed 9\ wgEncodeUwTfbsHuvecCtcfStdRawRep1 HUVEC CTCF Sg 1 bigWig 1.000000 2691.000000 HUVEC CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 40 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HUVEC CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t2HUVEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHuvecCtcfStdRawRep1\ type bigWig 1.000000 2691.000000\ wgEncodeUwDnaseHuvecHotspotsRep1 HUVEC Ht 1 broadPeak HUVEC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 40 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HUVEC Ht 1\ subGroups view=Hot cellType=t2HUVEC rep=rep1 treatment=None\ track wgEncodeUwDnaseHuvecHotspotsRep1\ type broadPeak\ wgEncodeOpenChromDnaseHuvecPk HUVEC Pk narrowPeak HUVEC DNaseI HS Peaks from ENCODE/Duke 3 40 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel HUVEC Pk\ subGroups view=Peaks cellType=t2HUVEC treatment=zNONE\ track wgEncodeOpenChromDnaseHuvecPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqK562CellShorttotalTapPlusRawRep1 K562 cell TAP + 1 bigWig 1.000000 1375703.000000 K562 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 40 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal on\ shortLabel K562 cell TAP + 1\ subGroups view=PlusSignal cellType=t1K562 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqK562CellShorttotalTapPlusRawRep1\ type bigWig 1.000000 1375703.000000\ wgEncodeDukeAffyExonMcf7VehSimpleSignalRep2V2 MCF-7 Veh 2 bigBed 6 + MCF-7 Vehicle Exon array Signal Rep 2 from ENCODE/Duke 0 40 0 0 0 127 127 127 1 0 0 expression 1 longLabel MCF-7 Vehicle Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel MCF-7 Veh 2\ subGroups cellType=t2MCF7 treatment=VEH rep=rep2\ track wgEncodeDukeAffyExonMcf7VehSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeOpenChromFaireMcf7VehPk MCF-7 Veh FAIR Pk narrowPeak MCF-7 Vehicle FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 40 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 Vehicle FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel MCF-7 Veh FAIR Pk\ subGroups view=Peaks cellType=t2MCF7 treatment=VEH\ track wgEncodeOpenChromFaireMcf7VehPk\ type narrowPeak\ wgEncodeSydhHistonePanc1H3k04me3bUcdSig PANC-1 H3K4me3 bigWig 1.000000 13162.000000 PANC-1 H3K4me3 Histone Modifications by ChIP-seq Signal from ENCODE/SYDH 2 40 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 H3K4me3 Histone Modifications by ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel PANC-1 H3K4me3\ subGroups view=Signal factor=H3K04ME3B cellType=cPANC1 control=UCD treatment=NONE\ track wgEncodeSydhHistonePanc1H3k04me3bUcdSig\ type bigWig 1.000000 13162.000000\ dhcHumDerDenAncSpliceFixedDbSnp Splice FxS bigBed 4 + Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: Splice 0 40 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: Splice\ parent dhcHumDerDenAncEns\ shortLabel Splice FxS\ subGroups view=Ens subset=Splice freq=FixedDbSnp\ track dhcHumDerDenAncSpliceFixedDbSnp\ Agilent_Human_Exon_V6_UTRs_Covered SureSel. V6+UTR P bigBed Agilent - SureSelect All Exon V6 + UTR r2 Covered by Probes 0 40 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S07604624_Covered.bb\ color 120,94,240\ longLabel Agilent - SureSelect All Exon V6 + UTR r2 Covered by Probes\ parent exomeProbesets off\ shortLabel SureSel. V6+UTR P\ track Agilent_Human_Exon_V6_UTRs_Covered\ type bigBed\ gtexEqtlTissueUterus uterus bed 9 + Expression QTL in Uterus from GTEx V6 0 40 238 213 210 246 234 232 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 238,213,210\ idInUrlSql select gene from gtexEqtlTissueUterus where name='%s'\ longLabel Expression QTL in Uterus from GTEx V6\ parent gtexEqtlTissue on\ shortLabel uterus\ track gtexEqtlTissueUterus\ wgEncodeGisRnaPetA549CellPapPlusRawRep4 A549 cell pA+ + 4 bigWig 1.000000 3211090.000000 A549 whole cell polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS 2 41 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel A549 cell pA+ + 4\ subGroups view=v2PlusRawSignal cellType=bA549 cloned=Free localization=cell rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetA549CellPapPlusRawRep4\ type bigWig 1.000000 3211090.000000\ wgEncodeUwHistoneA549H3k04me3StdRawRep1 A549 H3K4M3 Sg 1 bigWig 1.000000 2317.000000 A549 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 41 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel A549 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t2A549 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneA549H3k04me3StdRawRep1\ type bigWig 1.000000 2317.000000\ encTfChipPkENCFF053TBK A549 RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in A549 from ENCODE 3 (ENCFF053TBK) 1 41 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RFX5 in A549 from ENCODE 3 (ENCFF053TBK)\ parent encTfChipPk off\ shortLabel A549 RFX5\ subGroups cellType=A549 factor=RFX5\ track encTfChipPkENCFF053TBK\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_ctss_fwd AorticSmsToFgf2_05hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_forward 0 41 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep2%20%28LK26%29.CNhs13367.12748-136A3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12748-136A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_tpm_fwd AorticSmsToFgf2_05hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_forward 1 41 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep2%20%28LK26%29.CNhs13367.12748-136A3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12748-136A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3\ urlLabel FANTOM5 Details:\ pgNA19704 ASW NA19704 pgSnp ASW NA19704 (Complete Genomics) 0 41 0 0 0 127 127 127 0 0 0 varRep 1 longLabel ASW NA19704 (Complete Genomics)\ parent pgSnpCg\ shortLabel ASW NA19704\ subGroups view=C_CG id=CA_div_GS19704 type=SNP\ track pgNA19704\ wgEncodeHaibMethylRrbsCaco2UwSitesRep1 Caco-2 1 bed 9 + Caco-2 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 41 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Caco-2 1\ subGroups cellType=t3CACO2 obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsCaco2UwSitesRep1\ type bed 9 +\ wgEncodeHaibRnaSeqEcc1Dm002p4hRawRep1 ECC-1 DMSO 1 bigWig 0.264957 963.716003 ECC-1 DMSO 4 hr 0.02% RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 41 0 0 0 127 127 127 0 0 0 expression 0 longLabel ECC-1 DMSO 4 hr 0.02% RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel ECC-1 DMSO 1\ subGroups view=RawSignal cellType=t3ECC1 treatment=DM002P4H rep=rep1\ track wgEncodeHaibRnaSeqEcc1Dm002p4hRawRep1\ type bigWig 0.264957 963.716003\ wgEncodeUwDgfGm06990Hotspots GM06990 Hot broadPeak GM06990 DNaseI DGF Hotspots from ENCODE/UW 0 41 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel GM06990 Hot\ subGroups view=Hotspots cellType=t3GM06990 treatment=aNONE rep=rep1\ track wgEncodeUwDgfGm06990Hotspots\ type broadPeak\ wgEncodeAwgTfbsSydhGm12878Nfe2sc22827UniPk GM12878 NFE2 narrowPeak GM12878 TFBS Uniform Peaks of NF-E2_(SC-22827) from ENCODE/Stanford/Analysis 1 41 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of NF-E2_(SC-22827) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 NFE2\ subGroups tier=a10 cellType=a10GM12878 factor=NFE2 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Nfe2sc22827UniPk\ wgEncodeHaibTfbsGm12878Egr1V0416101PkRep2 GM78 Egr-1 V101 2 broadPeak GM12878 Egr-1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 41 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Egr-1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 Egr-1 V101 2\ subGroups view=Peaks factor=EGR1 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Egr1V0416101PkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12878Mxi1IggmusPk GM78 Mxi1 IgM narrowPeak GM12878 Mxi1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 41 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Mxi1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 Mxi1 IgM\ subGroups view=Peaks factor=MXI1 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Mxi1IggmusPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaAlnRep1 GM78 nuc pA- A 1 bam GM12878 nucleus polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 41 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleus polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel GM78 nuc pA- A 1\ subGroups view=Alignments cellType=t1GM12878 localization=NUCLEUS rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaAlnRep1\ type bam\ wgEncodeBroadHistoneH1hescH3k4me2StdSig H1-hESC H3K4m2 bigWig 0.040000 9300.160156 H1-hESC H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 41 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k4me2StdSig\ type bigWig 0.040000 9300.160156\ wgEncodeRikenCageH1hescNucleusPapAlnRep2 H1ES nucl pA+ A 2 bam H1-hESC nucleus polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 41 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC nucleus polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel H1ES nucl pA+ A 2\ subGroups view=Alignments cellType=t1H1HESC localization=nucleus rnaExtract=pAP rep=rep2 rank=rank1\ track wgEncodeRikenCageH1hescNucleusPapAlnRep2\ type bam\ wgEncodeUwAffyExonArrayH7esDiffa5dSimpleSignalRep1 H7-hESC 5d 1 broadPeak H7-hESC differentiated 5 d Exon Array Signal Rep 1 from ENCODE/UW 0 41 0 0 0 127 127 127 0 0 0 expression 1 longLabel H7-hESC differentiated 5 d Exon Array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel H7-hESC 5d 1\ subGroups cellType=t3H7HESC treatment=DIFFA5D rep=rep1\ track wgEncodeUwAffyExonArrayH7esDiffa5dSimpleSignalRep1\ type broadPeak\ wgEncodeAwgDnaseUwHaepicUniPk HAEpiC DNase narrowPeak HAEpiC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 41 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HAEpiC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HAEpiC DNase\ subGroups tier=a30 cellType=HAEpiC\ track wgEncodeAwgDnaseUwHaepicUniPk\ wgEncodeOpenChromChipHelas3CtcfSig HeLa-S3 CTCF DS bigWig 0.000000 8.258300 HeLa-S3 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 41 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel HeLa-S3 CTCF DS\ subGroups treatment=AANONE view=SIG factor=CTCF cellType=t2HELAS3\ track wgEncodeOpenChromChipHelas3CtcfSig\ type bigWig 0.000000 8.258300\ wgEncodeHaibGenotypeHnpceRegionsRep1 HNPCEpiC 1 bed 9 + HNPCEpiC Copy number variants Replicate 1 from ENCODE/HAIB 0 41 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HNPCEpiC Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HNPCEpiC 1\ subGroups cellType=t3HNPCEPIC obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeHnpceRegionsRep1\ type bed 9 +\ wgEncodeHaibMethyl450HreSitesRep1 HRE bed 9 HRE Methylation 450K Bead Array from ENCODE/HAIB 1 41 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel HRE\ subGroups cellType=t3HRE obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450HreSitesRep1\ type bed 9\ wgEncodeUwTfbsHuvecCtcfStdHotspotsRep2 HUVEC CTCF Ht 2 broadPeak HUVEC CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 41 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HUVEC CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t2HUVEC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHuvecCtcfStdHotspotsRep2\ type broadPeak\ wgEncodeOpenChromDnaseHuvecSig HUVEC DS bigWig 0.000000 2.605700 HUVEC DNaseI HS Density Signal from ENCODE/Duke 2 41 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel HUVEC DS\ subGroups view=SIG cellType=t2HUVEC treatment=zNONE\ track wgEncodeOpenChromDnaseHuvecSig\ type bigWig 0.000000 2.605700\ wgEncodeUwRepliSeqHuvecG1bPctSignalRep1 HUVEC G1b 1 bigWig 1.000000 100.000000 HUVEC G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 41 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HUVEC G1b 1\ subGroups view=v1PctSignal cellType=t2HUVEC phase=p1G1B rep=rep1\ track wgEncodeUwRepliSeqHuvecG1bPctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeUwDnaseHuvecPkRep1V2 HUVEC Pk 1 narrowPeak HUVEC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 41 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HUVEC Pk 1\ subGroups view=Peaks cellType=t2HUVEC rep=rep1 treatment=None\ track wgEncodeUwDnaseHuvecPkRep1V2\ type narrowPeak\ wgEncodeCaltechRnaSeqK562R2x75Il200AlignsRep1V2 K562 2x75 A 1 bam K562 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 41 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel K562 2x75 A 1\ subGroups view=Aligns cellType=t1K562 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqK562R2x75Il200AlignsRep1V2\ type bam\ wgEncodeCshlShortRnaSeqK562CellShorttotalTapPlusRawRep2 K562 cell TAP + 2 bigWig 1.000000 1897902.000000 K562 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 41 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel K562 cell TAP + 2\ subGroups view=PlusSignal cellType=t1K562 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqK562CellShorttotalTapPlusRawRep2\ type bigWig 1.000000 1897902.000000\ wgEncodeDukeAffyExonMcf7SimpleSignalRep1V2 MCF-7 1 bigBed 6 + MCF-7 Exon array Signal Rep 1 from ENCODE/Duke 0 41 0 0 0 127 127 127 1 0 0 expression 1 longLabel MCF-7 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel MCF-7 1\ subGroups cellType=t2MCF7 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonMcf7SimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeOpenChromFaireMcf7VehSig MCF-7 Veh FAIR DS bigWig 0.000000 0.757500 MCF-7 Vehicle FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 41 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 Vehicle FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel MCF-7 Veh FAIR DS\ subGroups view=SIG cellType=t2MCF7 treatment=VEH\ track wgEncodeOpenChromFaireMcf7VehSig\ type bigWig 0.000000 0.757500\ wgEncodeSydhHistonePanc1H3k27acUcdPk PANC-1 H3K27ac narrowPeak PANC-1 H3K27ac Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 41 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 H3K27ac Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks off\ shortLabel PANC-1 H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=cPANC1 control=UCD treatment=NONE\ track wgEncodeSydhHistonePanc1H3k27acUcdPk\ type narrowPeak\ dhcHumDerDenAncSpliceHighFreq Splice HiF bigBed 4 + Modern Human Derived (HighFreq), Denisova Ancestral: Splice 0 41 200 0 0 227 127 127 0 0 0 denisova 1 color 200,0,0\ longLabel Modern Human Derived (HighFreq), Denisova Ancestral: Splice\ parent dhcHumDerDenAncEns\ shortLabel Splice HiF\ subGroups view=Ens subset=Splice freq=HighFreq\ track dhcHumDerDenAncSpliceHighFreq\ Agilent_Human_Exon_V7_Covered SureSel. V7 P bigBed Agilent - SureSelect All Exon V7 Covered by Probes 0 41 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S31285117_Covered.bb\ color 120,94,240\ longLabel Agilent - SureSelect All Exon V7 Covered by Probes\ parent exomeProbesets on\ shortLabel SureSel. V7 P\ track Agilent_Human_Exon_V7_Covered\ type bigBed\ gtexEqtlTissueVagina vagina bed 9 + Expression QTL in Vagina from GTEx V6 0 41 238 213 210 246 234 232 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 238,213,210\ idInUrlSql select gene from gtexEqtlTissueVagina where name='%s'\ longLabel Expression QTL in Vagina from GTEx V6\ parent gtexEqtlTissue on\ shortLabel vagina\ track gtexEqtlTissueVagina\ wgEncodeDukeAffyExon8988tSimpleSignalRep1V2 8988T 1 bigBed 6 + 8988T Exon array Signal Rep 1 from ENCODE/Duke 0 42 0 0 0 127 127 127 1 0 0 expression 1 longLabel 8988T Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel 8988T 1\ subGroups cellType=t3A8988T treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExon8988tSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeGisRnaPetA549CellPapAlnRep3 A549 cell pA+ A 3 bam A549 whole cell polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS 0 42 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 whole cell polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel A549 cell pA+ A 3\ subGroups view=v3Alignments cellType=bA549 cloned=Free localization=cell rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetA549CellPapAlnRep3\ type bam\ wgEncodeUwHistoneA549H3k04me3StdHotspotsRep2 A549 H3K4M3 Ht 2 broadPeak A549 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 42 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel A549 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t2A549 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneA549H3k04me3StdHotspotsRep2\ type broadPeak\ encTfChipPkENCFF626AQW A549 RNF2 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in A549 from ENCODE 3 (ENCFF626AQW) 1 42 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RNF2 in A549 from ENCODE 3 (ENCFF626AQW)\ parent encTfChipPk off\ shortLabel A549 RNF2\ subGroups cellType=A549 factor=RNF2\ track encTfChipPkENCFF626AQW\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_ctss_rev AorticSmsToFgf2_05hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_reverse 0 42 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep2%20%28LK26%29.CNhs13367.12748-136A3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12748-136A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_tpm_rev AorticSmsToFgf2_05hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_reverse 1 42 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep2%20%28LK26%29.CNhs13367.12748-136A3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12748-136A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3\ urlLabel FANTOM5 Details:\ pgNA19704indel ASW NA19704 indel pgSnp ASW NA19704 indel (Complete Genomics) 0 42 0 0 0 127 127 127 0 0 0 varRep 1 longLabel ASW NA19704 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel ASW NA19704 indel\ subGroups view=C_CG id=CA_div_GS19704 type=Indel\ track pgNA19704indel\ wgEncodeHaibMethylRrbsCaco2UwSitesRep2 Caco-2 2 bed 9 + Caco-2 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 42 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Caco-2 2\ subGroups cellType=t3CACO2 obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsCaco2UwSitesRep2\ type bed 9 +\ wgEncodeHaibRnaSeqEcc1Dm002p4hAlnRep1 ECC-1 DMSO 1 bam ECC-1 DMSO 4 hr 0.02% RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 42 0 0 0 127 127 127 0 0 0 expression 1 longLabel ECC-1 DMSO 4 hr 0.02% RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel ECC-1 DMSO 1\ subGroups view=Alignments cellType=t3ECC1 treatment=DM002P4H rep=rep1\ track wgEncodeHaibRnaSeqEcc1Dm002p4hAlnRep1\ type bam\ wgEncodeUwDgfGm06990Pk GM06990 Pk narrowPeak GM06990 DNaseI DGF Peaks from ENCODE/UW 0 42 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel GM06990 Pk\ subGroups view=Peaks cellType=t3GM06990 treatment=aNONE rep=rep1\ track wgEncodeUwDgfGm06990Pk\ type narrowPeak\ wgEncodeAwgTfbsHaibGm12878Nficsc81335V0422111UniPk GM12878 NFIC narrowPeak GM12878 TFBS Uniform Peaks of NFIC_(SC-81335) from ENCODE/HudsonAlpha/Analysis 1 42 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of NFIC_(SC-81335) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 NFIC\ subGroups tier=a10 cellType=a10GM12878 factor=NFIC lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Nficsc81335V0422111UniPk\ wgEncodeHaibTfbsGm12878Egr1V0416101RawRep2 GM78 Egr-1 V101 2 bigWig 0.177257 135.867004 GM12878 Egr-1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 42 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Egr-1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 Egr-1 V101 2\ subGroups view=RawSignal factor=EGR1 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Egr1V0416101RawRep2\ type bigWig 0.177257 135.867004\ wgEncodeSydhTfbsGm12878Mxi1IggmusSig GM78 Mxi1 IgM bigWig 1.000000 13184.000000 GM12878 Mxi1 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 42 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Mxi1 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 Mxi1 IgM\ subGroups view=Signal factor=MXI1 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Mxi1IggmusSig\ type bigWig 1.000000 13184.000000\ wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaAlnRep2 GM78 nuc pA- A 2 bam GM12878 nucleus polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 42 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleus polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel GM78 nuc pA- A 2\ subGroups view=Alignments cellType=t1GM12878 localization=NUCLEUS rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaAlnRep2\ type bam\ wgEncodeBroadHistoneH1hescH3k4me3StdPk H1-hESC H3K4m3 broadPeak H1-hESC H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 42 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks\ shortLabel H1-hESC H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k4me3StdPk\ type broadPeak\ wgEncodeRikenCageH1hescCellPamTssHmmV2 H1ES cell pA- bed 6 H1-hESC whole cell polyA- CAGE TSS HMM from ENCODE/RIKEN 3 42 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC whole cell polyA- CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel H1ES cell pA-\ subGroups view=TssHmm cellType=t1H1HESC localization=wcell rnaExtract=pAM rep=rep0 rank=rankP\ track wgEncodeRikenCageH1hescCellPamTssHmmV2\ type bed 6\ wgEncodeUwAffyExonArrayH7esDiffa9dSimpleSignalRep1 H7-hESC 9d 1 broadPeak H7-hESC differentiated 9 d Exon Array Signal Rep 1 from ENCODE/UW 0 42 0 0 0 127 127 127 0 0 0 expression 1 longLabel H7-hESC differentiated 9 d Exon Array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel H7-hESC 9d 1\ subGroups cellType=t3H7HESC treatment=DIFFA9D rep=rep1\ track wgEncodeUwAffyExonArrayH7esDiffa9dSimpleSignalRep1\ type broadPeak\ wgEncodeAwgDnaseUwHacUniPk HAc DNase narrowPeak HAc DNaseI HS Uniform Peaks from ENCODE/Analysis 1 42 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HAc DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HAc DNase\ subGroups tier=a30 cellType=HAc\ track wgEncodeAwgDnaseUwHacUniPk\ wgEncodeOpenChromChipHelas3CtcfBaseOverlapSignal HeLa-S3 CTCF OS bigWig 0.000000 1958.000000 HeLa-S3 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 42 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel HeLa-S3 CTCF OS\ subGroups treatment=AANONE view=SIGBO factor=CTCF cellType=t2HELAS3\ track wgEncodeOpenChromChipHelas3CtcfBaseOverlapSignal\ type bigWig 0.000000 1958.000000\ wgEncodeHaibGenotypeHpaeRegionsRep1 HPAEpiC 1 bed 9 + HPAEpiC Copy number variants Replicate 1 from ENCODE/HAIB 0 42 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HPAEpiC Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HPAEpiC 1\ subGroups cellType=t3HPAEPIC obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeHpaeRegionsRep1\ type bed 9 +\ wgEncodeHaibMethyl450HrpeSitesRep1 HRPEpiC bed 9 HRPEpiC Methylation 450K Bead Array from ENCODE/HAIB 1 42 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRPEpiC Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel HRPEpiC\ subGroups cellType=t3HRPEPIC obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450HrpeSitesRep1\ type bed 9\ wgEncodeUwTfbsHuvecCtcfStdPkRep2 HUVEC CTCF Pk 2 narrowPeak HUVEC CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 42 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HUVEC CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t2HUVEC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHuvecCtcfStdPkRep2\ type narrowPeak\ wgEncodeOpenChromDnaseHuvecBaseOverlapSignal HUVEC OS bigWig 0.000000 198.000000 HUVEC DNaseI HS Overlap Signal from ENCODE/Duke 2 42 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel HUVEC OS\ subGroups view=SIGBO cellType=t2HUVEC treatment=zNONE\ track wgEncodeOpenChromDnaseHuvecBaseOverlapSignal\ type bigWig 0.000000 198.000000\ wgEncodeUwRepliSeqHuvecS1PctSignalRep1 HUVEC S1 1 bigWig 1.000000 100.000000 HUVEC S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 42 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HUVEC S1 1\ subGroups view=v1PctSignal cellType=t2HUVEC phase=p2S1 rep=rep1\ track wgEncodeUwRepliSeqHuvecS1PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeUwDnaseHuvecRawRep1 HUVEC Sg 1 bigWig 1.000000 12042.000000 HUVEC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 42 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HUVEC Sg 1\ subGroups view=zRSig cellType=t2HUVEC rep=rep1 treatment=None\ track wgEncodeUwDnaseHuvecRawRep1\ type bigWig 1.000000 12042.000000\ wgEncodeCaltechRnaSeqK562R2x75Il200AlignsRep2V2 K562 2x75 A 2 bam K562 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 42 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel K562 2x75 A 2\ subGroups view=Aligns cellType=t1K562 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqK562R2x75Il200AlignsRep2V2\ type bam\ wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapContigs K562 chrm TAP C bed 6 K562 TAP-only chromatin small RNA-seq Contigs from ENCODE/CSHL 2 42 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 TAP-only chromatin small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel K562 chrm TAP C\ subGroups view=Contigs cellType=t1K562 localization=CHROMATIN protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapContigs\ type bed 6\ wgEncodeOpenChromFaireMcf7VehBaseOverlapSignal MCF-7 Veh FAIR OS bigWig 0.000000 1481.000000 MCF-7 Vehicle FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 42 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 Vehicle FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel MCF-7 Veh FAIR OS\ subGroups view=SIGBO cellType=t2MCF7 treatment=VEH\ track wgEncodeOpenChromFaireMcf7VehBaseOverlapSignal\ type bigWig 0.000000 1481.000000\ wgEncodeSydhHistonePanc1H3k27acUcdSig PANC-1 H3K27ac bigWig 1.000000 26675.000000 PANC-1 H3K27ac Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 42 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 H3K27ac Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel PANC-1 H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=cPANC1 control=UCD treatment=NONE\ track wgEncodeSydhHistonePanc1H3k27acUcdSig\ type bigWig 1.000000 26675.000000\ Agilent_Human_Exon_V7_Regions SureSel. V7 T bigBed Agilent - SureSelect All Exon V7 Target Regions 0 42 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S31285117_Regions.bb\ color 120,94,240\ longLabel Agilent - SureSelect All Exon V7 Target Regions\ parent exomeProbesets on\ shortLabel SureSel. V7 T\ track Agilent_Human_Exon_V7_Regions\ type bigBed\ dhcHumDerDenAncUtr3Fixed Utr3 Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: 3' UTR 0 42 0 0 200 127 127 227 0 0 0 denisova 1 color 0,0,200\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: 3' UTR\ parent dhcHumDerDenAncEns\ shortLabel Utr3 Fxd\ subGroups view=Ens subset=Utr3 freq=Fixed\ track dhcHumDerDenAncUtr3Fixed\ gtexEqtlTissueWholeBlood wholeBlood bed 9 + Expression QTL in Whole_Blood from GTEx V6 0 42 255 0 255 255 127 255 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 255,0,255\ idInUrlSql select gene from gtexEqtlTissueWholeBlood where name='%s'\ longLabel Expression QTL in Whole_Blood from GTEx V6\ parent gtexEqtlTissue on\ shortLabel wholeBlood\ track gtexEqtlTissueWholeBlood\ wgEncodeDukeAffyExon8988tSimpleSignalRep2V2 8988T 2 bigBed 6 + 8988T Exon array Signal Rep 2 from ENCODE/Duke 0 43 0 0 0 127 127 127 1 0 0 expression 1 longLabel 8988T Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel 8988T 2\ subGroups cellType=t3A8988T treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExon8988tSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeGisRnaPetA549CellPapAlnRep4 A549 cell pA+ A 4 bam A549 whole cell polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS 0 43 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 whole cell polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel A549 cell pA+ A 4\ subGroups view=v3Alignments cellType=bA549 cloned=Free localization=cell rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetA549CellPapAlnRep4\ type bam\ wgEncodeUwHistoneA549H3k04me3StdPkRep2 A549 H3K4M3 Pk 2 narrowPeak A549 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 43 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel A549 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t2A549 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneA549H3k04me3StdPkRep2\ type narrowPeak\ encTfChipPkENCFF172VGB A549 SIN3A 1 narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in A549 from ENCODE 3 (ENCFF172VGB) 1 43 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SIN3A in A549 from ENCODE 3 (ENCFF172VGB)\ parent encTfChipPk off\ shortLabel A549 SIN3A 1\ subGroups cellType=A549 factor=SIN3A\ track encTfChipPkENCFF172VGB\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_ctss_fwd AorticSmsToFgf2_05hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_forward 0 43 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep3%20%28LK27%29.CNhs13575.12846-137C2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12846-137C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_tpm_fwd AorticSmsToFgf2_05hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_forward 1 43 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep3%20%28LK27%29.CNhs13575.12846-137C2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12846-137C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2\ urlLabel FANTOM5 Details:\ pgNA19834 ASW NA19834 pgSnp ASW NA19834 (Complete Genomics) 0 43 0 0 0 127 127 127 0 0 0 varRep 1 longLabel ASW NA19834 (Complete Genomics)\ parent pgSnpCg\ shortLabel ASW NA19834\ subGroups view=C_CG id=CA_div_GS19834 type=SNP\ track pgNA19834\ wgEncodeHaibMethylRrbsCmkUwSitesRep1 CMK 1 bed 9 + CMK Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 43 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CMK Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel CMK 1\ subGroups cellType=t3CMK obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsCmkUwSitesRep1\ type bed 9 +\ wgEncodeOpenChromFaireColonocPk Colon FAIRE Pk narrowPeak Colon FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 43 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Colon FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel Colon FAIRE Pk\ subGroups view=Peaks cellType=t3COLONOC treatment=AANONE\ track wgEncodeOpenChromFaireColonocPk\ type narrowPeak\ wgEncodeHaibRnaSeqEcc1Dm002p4hRawRep2 ECC-1 DMSO 2 bigWig 0.176215 817.461975 ECC-1 DMSO 4 hr 0.02% RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 43 0 0 0 127 127 127 0 0 0 expression 0 longLabel ECC-1 DMSO 4 hr 0.02% RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel ECC-1 DMSO 2\ subGroups view=RawSignal cellType=t3ECC1 treatment=DM002P4H rep=rep2\ track wgEncodeHaibRnaSeqEcc1Dm002p4hRawRep2\ type bigWig 0.176215 817.461975\ wgEncodeUwDgfGm06990Sig GM06990 Sig bigWig 1.000000 9745.000000 GM06990 DNaseI DGF Per-base Signal from ENCODE/UW 2 43 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel GM06990 Sig\ subGroups view=Signal cellType=t3GM06990 treatment=aNONE rep=rep1\ track wgEncodeUwDgfGm06990Sig\ type bigWig 1.000000 9745.000000\ wgEncodeAwgTfbsSydhGm12878NfyaIggmusUniPk GM12878 NFYA narrowPeak GM12878 TFBS Uniform Peaks of NF-YA from ENCODE/Harvard/Analysis 1 43 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of NF-YA from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 NFYA\ subGroups tier=a10 cellType=a10GM12878 factor=NFYA lab=Harvard\ track wgEncodeAwgTfbsSydhGm12878NfyaIggmusUniPk\ wgEncodeHaibTfbsGm12878Elf1sc631V0416101PkRep1 GM78 ELF1 V101 1 broadPeak GM12878 ELF1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 43 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ELF1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 ELF1 V101 1\ subGroups view=Peaks factor=ELF1SC631 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Elf1sc631V0416101PkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878Nfe2sc22827StdPk GM78 NFE2 Std narrowPeak GM12878 NF-E2 SC22827 Standard ChIP-seq Peaks from ENCODE/SYDH 3 43 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 NF-E2 SC22827 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 NFE2 Std\ subGroups view=Peaks factor=NFE2SC22827 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Nfe2sc22827StdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqGm12878NucleusPamContigs GM78 nuc pA- C bed 6 + GM12878 nucleus polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 43 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleus polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel GM78 nuc pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1GM12878 localization=NUCLEUS rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqGm12878NucleusPamContigs\ type bed 6 +\ wgEncodeBroadHistoneH1hescH3k4me3StdSig H1-hESC H3K4m3 bigWig 0.040000 9565.759766 H1-hESC H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 43 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal\ shortLabel H1-hESC H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k4me3StdSig\ type bigWig 0.040000 9565.759766\ wgEncodeRikenCageH1hescCellPamPlusSignal H1ES cell pA- + 1 bigWig 0.040000 23004.330078 H1-hESC whole cell polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 43 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel H1ES cell pA- + 1\ subGroups view=PlusRawSignal cellType=t1H1HESC localization=wcell rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageH1hescCellPamPlusSignal\ type bigWig 0.040000 23004.330078\ wgEncodeUwAffyExonArrayH7esDiffa14dSimpleSignalRep2 H7-hESC 14d 2 broadPeak H7-hESC differentiated 14 d Exon Array Signal Rep 2 from ENCODE/UW 0 43 0 0 0 127 127 127 0 0 0 expression 1 longLabel H7-hESC differentiated 14 d Exon Array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel H7-hESC 14d 2\ subGroups cellType=t3H7HESC treatment=DIFFA14D rep=rep2\ track wgEncodeUwAffyExonArrayH7esDiffa14dSimpleSignalRep2\ type broadPeak\ wgEncodeAwgDnaseUwHbmecUniPk HBMEC DNase narrowPeak HBMEC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 43 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HBMEC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HBMEC DNase\ subGroups tier=a30 cellType=HBMEC\ track wgEncodeAwgDnaseUwHbmecUniPk\ wgEncodeOpenChromChipHelas3Pol2Pk HeLa-S3 Pol2 Pk narrowPeak HeLa-S3 Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 43 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel HeLa-S3 Pol2 Pk\ subGroups treatment=AANONE view=Peaks factor=POL2 cellType=t2HELAS3\ track wgEncodeOpenChromChipHelas3Pol2Pk\ type narrowPeak\ wgEncodeHaibGenotypeHpaeRegionsRep2 HPAEpiC 2 bed 9 + HPAEpiC Copy number variants Replicate 2 from ENCODE/HAIB 0 43 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HPAEpiC Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HPAEpiC 2\ subGroups cellType=t3HPAEPIC obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeHpaeRegionsRep2\ type bed 9 +\ wgEncodeUwTfbsHuvecCtcfStdRawRep2 HUVEC CTCF Sg 2 bigWig 1.000000 1952.000000 HUVEC CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 43 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HUVEC CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t2HUVEC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHuvecCtcfStdRawRep2\ type bigWig 1.000000 1952.000000\ wgEncodeUwDnaseHuvecHotspotsRep2 HUVEC Ht 2 broadPeak HUVEC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 43 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HUVEC Ht 2\ subGroups view=Hot cellType=t2HUVEC rep=rep2 treatment=None\ track wgEncodeUwDnaseHuvecHotspotsRep2\ type broadPeak\ wgEncodeUwRepliSeqHuvecS2PctSignalRep1 HUVEC S2 1 bigWig 1.000000 100.000000 HUVEC S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 43 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HUVEC S2 1\ subGroups view=v1PctSignal cellType=t2HUVEC phase=p3S2 rep=rep1\ track wgEncodeUwRepliSeqHuvecS2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseImr90Pk IMR90 Pk narrowPeak IMR90 DNaseI HS Peaks from ENCODE/Duke 3 43 0 0 0 127 127 127 1 0 0 regulation 1 longLabel IMR90 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel IMR90 Pk\ subGroups view=Peaks cellType=t2IMR90 treatment=zNONE\ track wgEncodeOpenChromDnaseImr90Pk\ type narrowPeak\ wgEncodeHaibMethyl450JurkatSitesRep1 Jurkat bed 9 Jurkat Methylation 450K Bead Array from ENCODE/HAIB 1 43 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Jurkat Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel Jurkat\ subGroups cellType=t3JURKAT obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450JurkatSitesRep1\ type bed 9\ wgEncodeCaltechRnaSeqK562R2x75Th1014Il200SigRep1V4 K562 2x75 Sg 1 bigWig 0.025000 272104.406250 K562 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech 2 43 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal\ shortLabel K562 2x75 Sg 1\ subGroups view=Signal cellType=t1K562 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqK562R2x75Th1014Il200SigRep1V4\ type bigWig 0.025000 272104.406250\ wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapMinusRawRep3 K562 chrm TAP - 1 bigWig 1.000000 1152525.000000 K562 TAP-only chromatin small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 43 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only chromatin small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel K562 chrm TAP - 1\ subGroups view=MinusSignal cellType=t1K562 localization=CHROMATIN protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapMinusRawRep3\ type bigWig 1.000000 1152525.000000\ wgEncodeSydhHistonePanc1InputUcdSig PANC-1 Input bigWig 1.000000 65207.000000 PANC-1 Input Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 43 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 Input Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel PANC-1 Input\ subGroups view=Signal factor=INPUT cellType=cPANC1 control=UCD treatment=NONE\ track wgEncodeSydhHistonePanc1InputUcdSig\ type bigWig 1.000000 65207.000000\ Agilent_Human_Exon_V6_UTRs_Regions SureSelect SureSel. V6+UTR T bigBed Agilent - SureSelect All Exon V6 + UTR r2 Target Regions 0 43 120 94 240 187 174 247 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/S07604624_Regions.bb\ color 120,94,240\ longLabel Agilent - SureSelect All Exon V6 + UTR r2 Target Regions\ parent exomeProbesets off\ shortLabel SureSelect SureSel. V6+UTR T\ track Agilent_Human_Exon_V6_UTRs_Regions\ type bigBed\ dhcHumDerDenAncUtr3FixedDbSnp Utr3 FxS bigBed 4 + Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: 3' UTR 0 43 0 0 200 127 127 227 0 0 0 denisova 1 color 0,0,200\ longLabel Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: 3' UTR\ parent dhcHumDerDenAncEns\ shortLabel Utr3 FxS\ subGroups view=Ens subset=Utr3 freq=FixedDbSnp\ track dhcHumDerDenAncUtr3FixedDbSnp\ gtexEqtlTissueXformedfibroblasts xformedfibroblasts bed 9 + Expression QTL in Cells_Transformed_fibroblasts from GTEx V6 0 43 154 192 205 204 223 230 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 154,192,205\ idInUrlSql select gene from gtexEqtlTissueXformedfibroblasts where name='%s'\ longLabel Expression QTL in Cells_Transformed_fibroblasts from GTEx V6\ parent gtexEqtlTissue on\ shortLabel xformedfibroblasts\ track gtexEqtlTissueXformedfibroblasts\ wgEncodeGisRnaPetA549CytosolPapClusters A549 cyto pA+ bed 6 + A549 cytosol polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS 2 44 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 cytosol polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel A549 cyto pA+\ subGroups view=v1Clusters rep=rep1 rank=none cellType=bA549 cloned=Free localization=cytosol rnaExtract=PAP\ track wgEncodeGisRnaPetA549CytosolPapClusters\ type bed 6 +\ wgEncodeUwHistoneA549H3k04me3StdRawRep2 A549 H3K4M3 Sg 2 bigWig 1.000000 2590.000000 A549 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 44 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel A549 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t2A549 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneA549H3k04me3StdRawRep2\ type bigWig 1.000000 2590.000000\ encTfChipPkENCFF522RIA A549 SIN3A 2 narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in A549 from ENCODE 3 (ENCFF522RIA) 1 44 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SIN3A in A549 from ENCODE 3 (ENCFF522RIA)\ parent encTfChipPk off\ shortLabel A549 SIN3A 2\ subGroups cellType=A549 factor=SIN3A\ track encTfChipPkENCFF522RIA\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_ctss_rev AorticSmsToFgf2_05hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_reverse 0 44 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep3%20%28LK27%29.CNhs13575.12846-137C2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12846-137C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_tpm_rev AorticSmsToFgf2_05hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_reverse 1 44 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep3%20%28LK27%29.CNhs13575.12846-137C2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12846-137C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2\ urlLabel FANTOM5 Details:\ wgEncodeDukeAffyExonAosmcSerumfreeSimpleSignalRep1V2 AoSMC 1 bigBed 6 + AoSMC Serum-free media Exon array Signal Rep 1 from ENCODE/Duke 0 44 0 0 0 127 127 127 1 0 0 expression 1 longLabel AoSMC Serum-free media Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel AoSMC 1\ subGroups cellType=t3AOSMC treatment=SERUMFREE rep=rep1\ track wgEncodeDukeAffyExonAosmcSerumfreeSimpleSignalRep1V2\ type bigBed 6 +\ pgNA19834indel ASW NA19834 indel pgSnp ASW NA19834 indel (Complete Genomics) 0 44 0 0 0 127 127 127 0 0 0 varRep 1 longLabel ASW NA19834 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel ASW NA19834 indel\ subGroups view=C_CG id=CA_div_GS19834 type=Indel\ track pgNA19834indel\ wgEncodeHaibMethylRrbsCmkUwSitesRep2 CMK 2 bed 9 + CMK Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 44 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CMK Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel CMK 2\ subGroups cellType=t3CMK obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsCmkUwSitesRep2\ type bed 9 +\ wgEncodeOpenChromFaireColonocSig Colon FAIRE DS bigWig 0.000000 0.669900 Colon FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 44 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Colon FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel Colon FAIRE DS\ subGroups view=SIG cellType=t3COLONOC treatment=AANONE\ track wgEncodeOpenChromFaireColonocSig\ type bigWig 0.000000 0.669900\ wgEncodeHaibRnaSeqEcc1Dm002p4hAlnRep2 ECC-1 DMSO 2 bam ECC-1 DMSO 4 hr 0.02% RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 44 0 0 0 127 127 127 0 0 0 expression 1 longLabel ECC-1 DMSO 4 hr 0.02% RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel ECC-1 DMSO 2\ subGroups view=Alignments cellType=t3ECC1 treatment=DM002P4H rep=rep2\ track wgEncodeHaibRnaSeqEcc1Dm002p4hAlnRep2\ type bam\ wgEncodeUwDgfGm06990Raw GM06990 Raw bigWig 1.000000 57178.000000 GM06990 DNaseI DGF Raw Signal from ENCODE/UW 0 44 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel GM06990 Raw\ subGroups view=zRaw cellType=t3GM06990 treatment=aNONE rep=rep1\ track wgEncodeUwDgfGm06990Raw\ type bigWig 1.000000 57178.000000\ wgEncodeAwgTfbsSydhGm12878NfybIggmusUniPk GM12878 NFYB narrowPeak GM12878 TFBS Uniform Peaks of NF-YB from ENCODE/Harvard/Analysis 1 44 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of NF-YB from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 NFYB\ subGroups tier=a10 cellType=a10GM12878 factor=NFYB lab=Harvard\ track wgEncodeAwgTfbsSydhGm12878NfybIggmusUniPk\ wgEncodeHaibTfbsGm12878Elf1sc631V0416101RawRep1 GM78 ELF1 V101 1 bigWig 0.215755 529.677002 GM12878 ELF1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 44 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ELF1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 ELF1 V101 1\ subGroups view=RawSignal factor=ELF1SC631 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Elf1sc631V0416101RawRep1\ type bigWig 0.215755 529.677002\ wgEncodeSydhTfbsGm12878Nfe2sc22827StdSig GM78 NFE2 Std bigWig 1.000000 4981.000000 GM12878 NF-E2 SC22827 Standard ChIP-seq Signal from ENCODE/SYDH 2 44 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 NF-E2 SC22827 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 NFE2 Std\ subGroups view=Signal factor=NFE2SC22827 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Nfe2sc22827StdSig\ type bigWig 1.000000 4981.000000\ wgEncodeCshlLongRnaSeqGm12878NucleusPamJunctions GM78 nuc pA- J bed 6 + GM12878 nucleus polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 44 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleus polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel GM78 nuc pA- J\ subGroups view=Junctions cellType=t1GM12878 localization=NUCLEUS rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqGm12878NucleusPamJunctions\ type bed 6 +\ wgEncodeBroadHistoneH1hescH3k9acStdPk H1-hESC H3K9ac broadPeak H1-hESC H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 44 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC H3K9ac\ subGroups view=Peaks factor=H3K09AC cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k9acStdPk\ type broadPeak\ wgEncodeRikenCageH1hescCellPamMinusSignal H1ES cell pA- - 1 bigWig 0.040000 10790.110352 H1-hESC whole cell polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 44 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel H1ES cell pA- - 1\ subGroups view=MinusRawSignal cellType=t1H1HESC localization=wcell rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageH1hescCellPamMinusSignal\ type bigWig 0.040000 10790.110352\ wgEncodeUwAffyExonArrayH7esSimpleSignalRep2 H7-hESC 2 broadPeak H7-hESC Exon array Signal Rep 2 from ENCODE/UW 0 44 0 0 0 127 127 127 0 0 0 expression 1 longLabel H7-hESC Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel H7-hESC 2\ subGroups cellType=t3H7HESC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayH7esSimpleSignalRep2\ type broadPeak\ wgEncodeAwgDnaseUwHcfUniPk HCF DNase narrowPeak HCF DNaseI HS Uniform Peaks from ENCODE/Analysis 1 44 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HCF DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HCF DNase\ subGroups tier=a30 cellType=HCF\ track wgEncodeAwgDnaseUwHcfUniPk\ wgEncodeOpenChromChipHelas3Pol2Sig HeLa-S3 Pol2 DS bigWig 0.000000 4.858800 HeLa-S3 Pol2 TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 44 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Pol2 TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel HeLa-S3 Pol2 DS\ subGroups treatment=AANONE view=SIG factor=POL2 cellType=t2HELAS3\ track wgEncodeOpenChromChipHelas3Pol2Sig\ type bigWig 0.000000 4.858800\ wgEncodeHaibGenotypeHrceRegionsRep1 HRCEpiC 1 bed 9 + HRCEpiC Copy number variants Replicate 1 from ENCODE/HAIB 0 44 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HRCEpiC Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HRCEpiC 1\ subGroups cellType=t3HRCEPIC obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeHrceRegionsRep1\ type bed 9 +\ wgEncodeUwTfbsHuvecInputStdRawRep1 HUVEC In Sg 1 bigWig 1.000000 8683.000000 HUVEC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 44 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HUVEC In Sg 1\ subGroups view=zRSig factor=zInput cellType=t2HUVEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHuvecInputStdRawRep1\ type bigWig 1.000000 8683.000000\ wgEncodeUwDnaseHuvecPkRep2 HUVEC Pk 2 narrowPeak HUVEC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 44 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HUVEC Pk 2\ subGroups view=Peaks cellType=t2HUVEC rep=rep2 treatment=None\ track wgEncodeUwDnaseHuvecPkRep2\ type narrowPeak\ wgEncodeUwRepliSeqHuvecS3PctSignalRep1 HUVEC S3 1 bigWig 1.000000 100.000000 HUVEC S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 44 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HUVEC S3 1\ subGroups view=v1PctSignal cellType=t2HUVEC phase=p4S3 rep=rep1\ track wgEncodeUwRepliSeqHuvecS3PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseImr90Sig IMR90 DS bigWig 0.000000 1.676300 IMR90 DNaseI HS Density Signal from ENCODE/Duke 2 44 0 0 0 127 127 127 1 0 0 regulation 0 longLabel IMR90 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel IMR90 DS\ subGroups view=SIG cellType=t2IMR90 treatment=zNONE\ track wgEncodeOpenChromDnaseImr90Sig\ type bigWig 0.000000 1.676300\ wgEncodeCaltechRnaSeqK562R2x75Th1014Il200SigRep2V4 K562 2x75 Sg 2 bigWig 0.021200 203032.093750 K562 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech 2 44 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal\ shortLabel K562 2x75 Sg 2\ subGroups view=Signal cellType=t1K562 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqK562R2x75Th1014Il200SigRep2V4\ type bigWig 0.021200 203032.093750\ wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapMinusRawRep4 K562 chrm TAP - 2 bigWig 1.000000 671800.000000 K562 TAP-only chromatin small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 44 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only chromatin small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel K562 chrm TAP - 2\ subGroups view=MinusSignal cellType=t1K562 localization=CHROMATIN protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapMinusRawRep4\ type bigWig 1.000000 671800.000000\ wgEncodeHaibMethyl450LncapSitesRep1 LNCaP bed 9 LNCaP Methylation 450K Bead Array from ENCODE/HAIB 1 44 0 0 0 127 127 127 0 0 0 regulation 1 longLabel LNCaP Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel LNCaP\ subGroups cellType=t3LNCAP obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450LncapSitesRep1\ type bed 9\ wgEncodeSydhHistonePbmcH3k4me1UcdPk PBMC H3K4me1 narrowPeak PBMC H3K4me1 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 44 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PBMC H3K4me1 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks off\ shortLabel PBMC H3K4me1\ subGroups view=Peaks factor=H3K04ME1 cellType=cPBMC control=UCD treatment=NONE\ track wgEncodeSydhHistonePbmcH3k4me1UcdPk\ type narrowPeak\ truseq-dna-exome-targeted-manifest-v1-2 TruSeq DNA V1.2 T bigBed 4 Illumina - TruSeq DNA Exome V1.2 Target Regions 0 44 22 62 164 138 158 209 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/truseq-dna-exome-targeted-regions-manifest-v1-2.bb\ color 22,62,164\ longLabel Illumina - TruSeq DNA Exome V1.2 Target Regions\ parent exomeProbesets off\ shortLabel TruSeq DNA V1.2 T\ track truseq-dna-exome-targeted-manifest-v1-2\ type bigBed 4\ dhcHumDerDenAncUtr3HighFreq Utr3 HiF bigBed 4 + Modern Human Derived (HighFreq), Denisova Ancestral: 3' UTR 0 44 0 0 200 127 127 227 0 0 0 denisova 1 color 0,0,200\ longLabel Modern Human Derived (HighFreq), Denisova Ancestral: 3' UTR\ parent dhcHumDerDenAncEns\ shortLabel Utr3 HiF\ subGroups view=Ens subset=Utr3 freq=HighFreq\ track dhcHumDerDenAncUtr3HighFreq\ gtexEqtlTissueXformedlymphocytes xformedlymphocytes bed 9 + Expression QTL in Cells_EBV-transformed_lymphocytes from GTEx V6 0 44 238 130 238 246 192 246 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$ regulation 1 color 238,130,238\ idInUrlSql select gene from gtexEqtlTissueXformedlymphocytes where name='%s'\ longLabel Expression QTL in Cells_EBV-transformed_lymphocytes from GTEx V6\ parent gtexEqtlTissue on\ shortLabel xformedlymphocytes\ track gtexEqtlTissueXformedlymphocytes\ wgEncodeGisRnaPetA549CytosolPapMinusRawRep3 A549 cyto pA+ - 3 bigWig 1.000000 3243320.000000 A549 cytosol polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS 2 45 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 cytosol polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel A549 cyto pA+ - 3\ subGroups view=v2MinusRawSignal cellType=bA549 cloned=Free localization=cytosol rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetA549CytosolPapMinusRawRep3\ type bigWig 1.000000 3243320.000000\ wgEncodeUwHistoneA549InputStdRawRep1 A549 In Sg 1 bigWig 1.000000 12152.000000 A549 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 45 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel A549 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t2A549 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneA549InputStdRawRep1\ type bigWig 1.000000 12152.000000\ encTfChipPkENCFF165AUR A549 SIX5 narrowPeak Transcription Factor ChIP-seq Peaks of SIX5 in A549 from ENCODE 3 (ENCFF165AUR) 1 45 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SIX5 in A549 from ENCODE 3 (ENCFF165AUR)\ parent encTfChipPk off\ shortLabel A549 SIX5\ subGroups cellType=A549 factor=SIX5\ track encTfChipPkENCFF165AUR\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_ctss_fwd AorticSmsToFgf2_06hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_forward 0 45 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep1%20%28LK28%29.CNhs13348.12651-134H5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12651-134H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_tpm_fwd AorticSmsToFgf2_06hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_forward 1 45 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep1%20%28LK28%29.CNhs13348.12651-134H5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12651-134H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5\ urlLabel FANTOM5 Details:\ wgEncodeDukeAffyExonAosmcSerumfreeSimpleSignalRep2V2 AoSMC 2 bigBed 6 + AoSMC Serum-free media Exon array Signal Rep 2 from ENCODE/Duke 0 45 0 0 0 127 127 127 1 0 0 expression 1 longLabel AoSMC Serum-free media Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel AoSMC 2\ subGroups cellType=t3AOSMC treatment=SERUMFREE rep=rep2\ track wgEncodeDukeAffyExonAosmcSerumfreeSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeOpenChromFaireColonocBaseOverlapSignal Colon FAIRE OS bigWig 0.000000 2410.000000 Colon FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 45 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Colon FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel Colon FAIRE OS\ subGroups view=SIGBO cellType=t3COLONOC treatment=AANONE\ track wgEncodeOpenChromFaireColonocBaseOverlapSignal\ type bigWig 0.000000 2410.000000\ wgEncodeHaibMethylRrbsEcc1HaibSitesRep1 ECC-1 1 bed 9 + ECC-1 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 45 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel ECC-1 1\ subGroups cellType=t3ECC1 obtainedBy=HAIB treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsEcc1HaibSitesRep1\ type bed 9 +\ wgEncodeHaibRnaSeqEcc1Estradia4hRawRep1 ECC-1 EST 1 bigWig 0.267722 963.263977 ECC-1 ESTRADIOL 4 hr 10 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 45 0 0 0 127 127 127 0 0 0 expression 0 longLabel ECC-1 ESTRADIOL 4 hr 10 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel ECC-1 EST 1\ subGroups view=RawSignal cellType=t3ECC1 treatment=EST10NM4H rep=rep1\ track wgEncodeHaibRnaSeqEcc1Estradia4hRawRep1\ type bigWig 0.267722 963.263977\ wgEncodeUwDgfGm12865Hotspots GM12865 Hot broadPeak GM12865 DNaseI DGF Hotspots from ENCODE/UW 0 45 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12865 DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel GM12865 Hot\ subGroups view=Hotspots cellType=t3GM12865 treatment=aNONE rep=rep1\ track wgEncodeUwDgfGm12865Hotspots\ type broadPeak\ wgEncodeAwgTfbsSydhGm12878Tr4UniPk GM12878 NR2C2 narrowPeak GM12878 TFBS Uniform Peaks of TR4 from ENCODE/USC/Analysis 1 45 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of TR4 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 NR2C2\ subGroups tier=a10 cellType=a10GM12878 factor=NR2C2 lab=USC\ track wgEncodeAwgTfbsSydhGm12878Tr4UniPk\ wgEncodeHaibTfbsGm12878Elf1sc631V0416101PkRep2 GM78 ELF1 V101 2 broadPeak GM12878 ELF1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 45 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ELF1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 ELF1 V101 2\ subGroups view=Peaks factor=ELF1SC631 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Elf1sc631V0416101PkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaMinusRawSigRep1 GM78 nuc pA- - 1 bigWig 1.000000 4320234.000000 GM12878 nucleus polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 45 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleus polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel GM78 nuc pA- - 1\ subGroups view=MinusSignal cellType=t1GM12878 localization=NUCLEUS rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 4320234.000000\ wgEncodeSydhTfbsGm12878NfkbTnfaIggrabPk GM78 TNF NKB IgR narrowPeak GM12878 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH 3 45 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 TNF NKB IgR\ subGroups view=Peaks factor=NFKB cellType=t1GM12878 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm12878NfkbTnfaIggrabPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescH3k9acStdSig H1-hESC H3K9ac bigWig 0.040000 17840.919922 H1-hESC H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 45 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC H3K9ac\ subGroups view=Signal factor=H3K09AC cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k9acStdSig\ type bigWig 0.040000 17840.919922\ wgEncodeRikenCageH1hescCellPamAln H1ES cell pA- A 1 bam H1-hESC whole cell polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN 0 45 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC whole cell polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel H1ES cell pA- A 1\ subGroups view=Alignments cellType=t1H1HESC localization=wcell rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageH1hescCellPamAln\ type bam\ wgEncodeUwAffyExonArrayH7esDiffa2dSimpleSignalRep2 H7-hESC 2d 2 broadPeak H7-hESC differentiated 2 d Exon Array Signal Rep 2 from ENCODE/UW 0 45 0 0 0 127 127 127 0 0 0 expression 1 longLabel H7-hESC differentiated 2 d Exon Array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel H7-hESC 2d 2\ subGroups cellType=t3H7HESC treatment=DIFFA2D rep=rep2\ track wgEncodeUwAffyExonArrayH7esDiffa2dSimpleSignalRep2\ type broadPeak\ wgEncodeAwgDnaseUwHcfaaUniPk HCFaa DNase narrowPeak HCFaa DNaseI HS Uniform Peaks from ENCODE/Analysis 1 45 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HCFaa DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HCFaa DNase\ subGroups tier=a30 cellType=HCFaa\ track wgEncodeAwgDnaseUwHcfaaUniPk\ wgEncodeOpenChromChipHelas3Pol2BaseOverlapSignal HeLa-S3 Pol2 OS bigWig 0.000000 2084.000000 HeLa-S3 Pol2 TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 45 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Pol2 TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel HeLa-S3 Pol2 OS\ subGroups treatment=AANONE view=SIGBO factor=POL2 cellType=t2HELAS3\ track wgEncodeOpenChromChipHelas3Pol2BaseOverlapSignal\ type bigWig 0.000000 2084.000000\ wgEncodeHaibGenotypeHrceRegionsRep2 HRCEpiC 2 bed 9 + HRCEpiC Copy number variants Replicate 2 from ENCODE/HAIB 0 45 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HRCEpiC Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HRCEpiC 2\ subGroups cellType=t3HRCEPIC obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeHrceRegionsRep2\ type bed 9 +\ wgEncodeUwRepliSeqHuvecS4PctSignalRep1 HUVEC S4 1 bigWig 1.000000 100.000000 HUVEC S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 45 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HUVEC S4 1\ subGroups view=v1PctSignal cellType=t2HUVEC phase=p5S4 rep=rep1\ track wgEncodeUwRepliSeqHuvecS4PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeUwDnaseHuvecRawRep2 HUVEC Sg 2 bigWig 1.000000 33364.000000 HUVEC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 45 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HUVEC Sg 2\ subGroups view=zRSig cellType=t2HUVEC rep=rep2 treatment=None\ track wgEncodeUwDnaseHuvecRawRep2\ type bigWig 1.000000 33364.000000\ wgEncodeOpenChromDnaseImr90BaseOverlapSignal IMR90 OS bigWig 0.000000 220.000000 IMR90 DNaseI HS Overlap Signal from ENCODE/Duke 2 45 0 0 0 127 127 127 1 0 0 regulation 0 longLabel IMR90 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel IMR90 OS\ subGroups view=SIGBO cellType=t2IMR90 treatment=zNONE\ track wgEncodeOpenChromDnaseImr90BaseOverlapSignal\ type bigWig 0.000000 220.000000\ wgEncodeCaltechRnaSeqK562R2x75Il200SplicesRep1V2 K562 2x75 Sp 1 bam K562 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 45 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel K562 2x75 Sp 1\ subGroups view=Splices cellType=t1K562 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqK562R2x75Il200SplicesRep1V2\ type bam\ wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapPlusRawRep3 K562 chrm TAP + 1 bigWig 1.000000 1791016.000000 K562 TAP-only chromatin small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 45 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only chromatin small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel K562 chrm TAP + 1\ subGroups view=PlusSignal cellType=t1K562 localization=CHROMATIN protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapPlusRawRep3\ type bigWig 1.000000 1791016.000000\ wgEncodeHaibMethyl450Mcf10aesTamSitesRep1 MCF10A TAM bed 9 MCF10A TAM Methylation 450K Bead Array from ENCODE/HAIB 1 45 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A TAM Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel MCF10A TAM\ subGroups cellType=t3MCF10AERSRC obtainedBy=Stanford treatment=TAM\ track wgEncodeHaibMethyl450Mcf10aesTamSitesRep1\ type bed 9\ wgEncodeUwTfbsMcf7CtcfStdHotspotsRep1 MCF7 CTCF Ht 1 broadPeak MCF-7 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 45 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel MCF7 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t2MCF7 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsMcf7CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeSydhHistonePbmcH3k4me1UcdSig PBMC H3K4me1 bigWig 1.000000 16645.000000 PBMC H3K4me1 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 45 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PBMC H3K4me1 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel PBMC H3K4me1\ subGroups view=Signal factor=H3K04ME1 cellType=cPBMC control=UCD treatment=NONE\ track wgEncodeSydhHistonePbmcH3k4me1UcdSig\ type bigWig 1.000000 16645.000000\ pgHG00732 PUR mother '732 pgSnp PUR Trio Mother HG00732 (Complete Genomics) 0 45 128 64 0 191 159 127 0 0 0 varRep 1 color 128,64,0\ longLabel PUR Trio Mother HG00732 (Complete Genomics)\ parent pgSnpCg\ shortLabel PUR mother '732\ subGroups view=C_CG id=CB_PUR_732 type=SNP\ track pgHG00732\ truseq-rapid-exome-targeted-regions-manifest-v1-2 TruSeq Rapid v1.2 T bigBed 4 Illumina - TruSeq Rapid Exome V1.2 Target Regions Regions 0 45 22 62 164 138 158 209 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/truseq-rapid-exome-targeted-regions-manifest-v1-2.bb\ color 22,62,164\ longLabel Illumina - TruSeq Rapid Exome V1.2 Target Regions Regions\ parent exomeProbesets off\ shortLabel TruSeq Rapid v1.2 T\ track truseq-rapid-exome-targeted-regions-manifest-v1-2\ type bigBed 4\ dhcHumDerDenAncUtr5Fixed Utr5 Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: 5' UTR 0 45 0 0 200 127 127 227 0 0 0 denisova 1 color 0,0,200\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: 5' UTR\ parent dhcHumDerDenAncEns\ shortLabel Utr5 Fxd\ subGroups view=Ens subset=Utr5 freq=Fixed\ track dhcHumDerDenAncUtr5Fixed\ wgEncodeUwHistoneCd20ro01778H3k04me3StdHotspotsRep1 20+78 H3K4M3 Ht 1 broadPeak CD20+ (RO 01778) H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 46 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CD20+ (RO 01778) H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel 20+78 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t2BCELLSCD20RO01778 treatment=zNone rep=rep1\ track wgEncodeUwHistoneCd20ro01778H3k04me3StdHotspotsRep1\ type broadPeak\ wgEncodeGisRnaPetA549CytosolPapMinusRawRep4 A549 cyto pA+ - 4 bigWig 1.000000 4638480.000000 A549 cytosol polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS 2 46 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 cytosol polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel A549 cyto pA+ - 4\ subGroups view=v2MinusRawSignal cellType=bA549 cloned=Free localization=cytosol rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetA549CytosolPapMinusRawRep4\ type bigWig 1.000000 4638480.000000\ encTfChipPkENCFF125YHG A549 SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in A549 from ENCODE 3 (ENCFF125YHG) 1 46 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SMC3 in A549 from ENCODE 3 (ENCFF125YHG)\ parent encTfChipPk off\ shortLabel A549 SMC3\ subGroups cellType=A549 factor=SMC3\ track encTfChipPkENCFF125YHG\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_ctss_rev AorticSmsToFgf2_06hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_reverse 0 46 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep1%20%28LK28%29.CNhs13348.12651-134H5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12651-134H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_tpm_rev AorticSmsToFgf2_06hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_reverse 1 46 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep1%20%28LK28%29.CNhs13348.12651-134H5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12651-134H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5\ urlLabel FANTOM5 Details:\ wgEncodeDukeAffyExonAosmcTgfbSimpleSignalRep1V2 AoSMC TGFb 1 bigBed 6 + AoSMC TGFb Exon array Signal Rep 1 from ENCODE/Duke 0 46 0 0 0 127 127 127 1 0 0 expression 1 longLabel AoSMC TGFb Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel AoSMC TGFb 1\ subGroups cellType=t3AOSMC treatment=TGFB rep=rep1\ track wgEncodeDukeAffyExonAosmcTgfbSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeHaibMethylRrbsEcc1HaibSitesRep2 ECC-1 2 bed 9 + ECC-1 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 46 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel ECC-1 2\ subGroups cellType=t3ECC1 obtainedBy=HAIB treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsEcc1HaibSitesRep2\ type bed 9 +\ wgEncodeHaibRnaSeqEcc1Estradia4hAlnRep1 ECC-1 EST 1 bam ECC-1 ESTRADIOL 4 hr 10 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 46 0 0 0 127 127 127 0 0 0 expression 1 longLabel ECC-1 ESTRADIOL 4 hr 10 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel ECC-1 EST 1\ subGroups view=Alignments cellType=t3ECC1 treatment=EST10NM4H rep=rep1\ track wgEncodeHaibRnaSeqEcc1Estradia4hAlnRep1\ type bam\ wgEncodeOpenChromFaireEndometriumocPk Endometr FAIRE Pk narrowPeak Endometrium FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 46 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Endometrium FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel Endometr FAIRE Pk\ subGroups view=Peaks cellType=t3ENDOMETRIUMOC treatment=AANONE\ track wgEncodeOpenChromFaireEndometriumocPk\ type narrowPeak\ wgEncodeUwDgfGm12865Pk GM12865 Pk narrowPeak GM12865 DNaseI DGF Peaks from ENCODE/UW 0 46 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12865 DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel GM12865 Pk\ subGroups view=Peaks cellType=t3GM12865 treatment=aNONE rep=rep1\ track wgEncodeUwDgfGm12865Pk\ type narrowPeak\ wgEncodeAwgTfbsSydhGm12878Nrf1IggmusUniPk GM12878 NRF1 narrowPeak GM12878 TFBS Uniform Peaks of Nrf1 from ENCODE/Stanford/Analysis 1 46 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of Nrf1 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 NRF1\ subGroups tier=a10 cellType=a10GM12878 factor=NRF1 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Nrf1IggmusUniPk\ wgEncodeHaibTfbsGm12878Elf1sc631V0416101RawRep2 GM78 ELF1 V101 2 bigWig 0.203518 90.158600 GM12878 ELF1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 46 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ELF1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 ELF1 V101 2\ subGroups view=RawSignal factor=ELF1SC631 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Elf1sc631V0416101RawRep2\ type bigWig 0.203518 90.158600\ wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaMinusRawSigRep2 GM78 nuc pA- - 2 bigWig 1.000000 1823306.000000 GM12878 nucleus polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 46 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleus polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel GM78 nuc pA- - 2\ subGroups view=MinusSignal cellType=t1GM12878 localization=NUCLEUS rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 1823306.000000\ wgEncodeSydhTfbsGm12878NfkbTnfaIggrabSig GM78 TNF NKB IgR bigWig 0.000000 6696.200195 GM12878 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 46 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 TNF NKB IgR\ subGroups view=Signal factor=NFKB cellType=t1GM12878 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm12878NfkbTnfaIggrabSig\ type bigWig 0.000000 6696.200195\ wgEncodeBroadHistoneH1hescH3k09me3StdPk H1-hESC H3K9m3 broadPeak H1-hESC H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 46 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC H3K9m3\ subGroups view=Peaks factor=H3K09ME3 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k09me3StdPk\ type broadPeak\ wgEncodeRikenCageH1hescCellPapTssHmm H1ES cell pA+ bed 6 H1-hESC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 46 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel H1ES cell pA+\ subGroups view=TssHmm cellType=t1H1HESC localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageH1hescCellPapTssHmm\ type bed 6\ wgEncodeUwAffyExonArrayH7esDiffa5dSimpleSignalRep2 H7-hESC 5d 2 broadPeak H7-hESC differentiated 5 d Exon Array Signal Rep 2 from ENCODE/UW 0 46 0 0 0 127 127 127 0 0 0 expression 1 longLabel H7-hESC differentiated 5 d Exon Array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel H7-hESC 5d 2\ subGroups cellType=t3H7HESC treatment=DIFFA5D rep=rep2\ track wgEncodeUwAffyExonArrayH7esDiffa5dSimpleSignalRep2\ type broadPeak\ wgEncodeAwgDnaseUwHcmUniPk HCM DNase narrowPeak HCM DNaseI HS Uniform Peaks from ENCODE/Analysis 1 46 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HCM DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HCM DNase\ subGroups tier=a30 cellType=HCM\ track wgEncodeAwgDnaseUwHcmUniPk\ wgEncodeOpenChromChipHelas3InputSig HeLa-S3 Input DS bigWig 0.000000 3.396000 HeLa-S3 Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 46 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel HeLa-S3 Input DS\ subGroups treatment=AANONE view=SIG factor=zCTRL cellType=t2HELAS3\ track wgEncodeOpenChromChipHelas3InputSig\ type bigWig 0.000000 3.396000\ wgEncodeHaibGenotypeHreRegionsRep1 HRE 1 bed 9 + HRE Copy number variants Replicate 1 from ENCODE/HAIB 0 46 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HRE Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HRE 1\ subGroups cellType=t3HRE obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeHreRegionsRep1\ type bed 9 +\ wgEncodeUwRepliSeqHuvecG2PctSignalRep1 HUVEC G2 1 bigWig 1.000000 100.000000 HUVEC G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 46 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal\ shortLabel HUVEC G2 1\ subGroups view=v1PctSignal cellType=t2HUVEC phase=p6G2 rep=rep1\ track wgEncodeUwRepliSeqHuvecG2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeCaltechRnaSeqK562R2x75Il200SplicesRep2V2 K562 2x75 Sp 2 bam K562 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 46 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel K562 2x75 Sp 2\ subGroups view=Splices cellType=t1K562 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqK562R2x75Il200SplicesRep2V2\ type bam\ wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapPlusRawRep4 K562 chrm TAP + 2 bigWig 1.000000 2708620.000000 K562 TAP-only chromatin small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 46 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only chromatin small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel K562 chrm TAP + 2\ subGroups view=PlusSignal cellType=t1K562 localization=CHROMATIN protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapPlusRawRep4\ type bigWig 1.000000 2708620.000000\ wgEncodeUwDnaseLhcnm2Diff4dHotspotsRep1 LHCNM2 dif4d Ht 1 broadPeak LHCN-M2 DIFF 4 d DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 46 0 0 0 127 127 127 0 0 0 regulation 1 longLabel LHCN-M2 DIFF 4 d DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel LHCNM2 dif4d Ht 1\ subGroups view=Hot cellType=t2LHCNM2 treatment=DIFF4D rep=rep1\ track wgEncodeUwDnaseLhcnm2Diff4dHotspotsRep1\ type broadPeak\ wgEncodeHaibMethyl450Mcf10aesSitesRep1 MCF10A bed 9 MCF10A Methylation 450K Bead Array from ENCODE/HAIB 1 46 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel MCF10A\ subGroups cellType=t3MCF10AERSRC obtainedBy=Stanford treatment=zNONE\ track wgEncodeHaibMethyl450Mcf10aesSitesRep1\ type bed 9\ wgEncodeUwTfbsMcf7CtcfStdPkRep1 MCF7 CTCF Pk 1 narrowPeak MCF-7 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 46 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel MCF7 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t2MCF7 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsMcf7CtcfStdPkRep1\ type narrowPeak\ wgEncodeOpenChromDnaseMcf7CtcfshrnaPk MCF7 CTCFshRNA Pk narrowPeak MCF-7 CTCF shRNA knockdown DNaseI HS Peaks from ENCODE/Duke 3 46 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 CTCF shRNA knockdown DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel MCF7 CTCFshRNA Pk\ subGroups view=Peaks cellType=t2MCF7 treatment=CTCFSHRNA\ track wgEncodeOpenChromDnaseMcf7CtcfshrnaPk\ type narrowPeak\ wgEncodeSydhHistonePbmcH3k04me3bUcdPk PBMC H3K4me3 narrowPeak PBMC H3K4me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 46 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PBMC H3K4me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks off\ shortLabel PBMC H3K4me3\ subGroups view=Peaks factor=H3K04ME3B cellType=cPBMC control=UCD treatment=NONE\ track wgEncodeSydhHistonePbmcH3k04me3bUcdPk\ type narrowPeak\ pgHG00732indel PUR HG00732 indel pgSnp PUR HG00732 (Mother) indel (Complete Genomics) 0 46 0 0 0 127 127 127 0 0 0 varRep 1 longLabel PUR HG00732 (Mother) indel (Complete Genomics)\ parent pgSnpCg\ shortLabel PUR HG00732 indel\ subGroups view=C_CG id=CB_PUR_732 type=Indel\ track pgHG00732indel\ TSOne_Expanded_BED_v2 TruSight One Exp. V2.0 T bigBed 4 Illumina - TruSight ONE Expanded V2.0 Target Regions 0 46 22 62 164 138 158 209 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/TSOne_Expanded_BED_v2.0.bb\ color 22,62,164\ longLabel Illumina - TruSight ONE Expanded V2.0 Target Regions\ parent exomeProbesets on\ shortLabel TruSight One Exp. V2.0 T\ track TSOne_Expanded_BED_v2\ type bigBed 4\ dhcHumDerDenAncUtr5FixedDbSnp Utr5 FxS bigBed 4 + Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: 5' UTR 0 46 0 0 200 127 127 227 0 0 0 denisova 1 color 0,0,200\ longLabel Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: 5' UTR\ parent dhcHumDerDenAncEns\ shortLabel Utr5 FxS\ subGroups view=Ens subset=Utr5 freq=FixedDbSnp\ track dhcHumDerDenAncUtr5FixedDbSnp\ wgEncodeUwHistoneCd20ro01778H3k04me3StdPkRep1 20+78 H3K4M3 Pk 1 narrowPeak CD20+ (RO 01778) H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 47 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CD20+ (RO 01778) H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel 20+78 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t2BCELLSCD20RO01778 treatment=zNone rep=rep1\ track wgEncodeUwHistoneCd20ro01778H3k04me3StdPkRep1\ type narrowPeak\ wgEncodeGisRnaPetA549CytosolPapPlusRawRep3 A549 cyto pA+ + 3 bigWig 1.000000 2786330.000000 A549 cytosol polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS 2 47 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 cytosol polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel A549 cyto pA+ + 3\ subGroups view=v2PlusRawSignal cellType=bA549 cloned=Free localization=cytosol rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetA549CytosolPapPlusRawRep3\ type bigWig 1.000000 2786330.000000\ encTfChipPkENCFF348RKC A549 SP1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in A549 from ENCODE 3 (ENCFF348RKC) 1 47 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SP1 in A549 from ENCODE 3 (ENCFF348RKC)\ parent encTfChipPk off\ shortLabel A549 SP1\ subGroups cellType=A549 factor=SP1\ track encTfChipPkENCFF348RKC\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_ctss_fwd AorticSmsToFgf2_06hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_forward 0 47 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep2%20%28LK29%29.CNhs13368.12749-136A4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12749-136A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_tpm_fwd AorticSmsToFgf2_06hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_forward 1 47 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep2%20%28LK29%29.CNhs13368.12749-136A4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12749-136A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4\ urlLabel FANTOM5 Details:\ wgEncodeDukeAffyExonAosmcTgfbSimpleSignalRep2V2 AoSMC TGFb 2 bigBed 6 + AoSMC TGFb Exon array Signal Rep 2 from ENCODE/Duke 0 47 0 0 0 127 127 127 1 0 0 expression 1 longLabel AoSMC TGFb Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel AoSMC TGFb 2\ subGroups cellType=t3AOSMC treatment=TGFB rep=rep2\ track wgEncodeDukeAffyExonAosmcTgfbSimpleSignalRep2V2\ type bigBed 6 +\ pgNA06985 CEU NA06985 pgSnp CEU NA06985 (Complete Genomics) 0 47 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA06985 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA06985\ subGroups view=C_CG id=CB_div_GS06985 type=SNP\ track pgNA06985\ wgEncodeHaibRnaSeqEcc1Estradia4hRawRep2 ECC-1 EST 2 bigWig 0.208881 751.294006 ECC-1 ESTRADIOL 4 hr 10 nM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 47 0 0 0 127 127 127 0 0 0 expression 0 longLabel ECC-1 ESTRADIOL 4 hr 10 nM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel ECC-1 EST 2\ subGroups view=RawSignal cellType=t3ECC1 treatment=EST10NM4H rep=rep2\ track wgEncodeHaibRnaSeqEcc1Estradia4hRawRep2\ type bigWig 0.208881 751.294006\ wgEncodeOpenChromFaireEndometriumocSig Endometr FAIRE DS bigWig 0.000000 0.350500 Endometrium FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 47 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Endometrium FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel Endometr FAIRE DS\ subGroups view=SIG cellType=t3ENDOMETRIUMOC treatment=AANONE\ track wgEncodeOpenChromFaireEndometriumocSig\ type bigWig 0.000000 0.350500\ wgEncodeHaibMethylRrbsFibroblDukeSitesRep1 Fibrobl 1 bed 9 + Fibrobl Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 47 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Fibrobl Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Fibrobl 1\ subGroups cellType=t3FIBROBL obtainedBy=DUKE treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsFibroblDukeSitesRep1\ type bed 9 +\ wgEncodeUwDgfGm12865Sig GM12865 Sig bigWig 1.000000 20476.000000 GM12865 DNaseI DGF Per-base Signal from ENCODE/UW 2 47 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12865 DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel GM12865 Sig\ subGroups view=Signal cellType=t3GM12865 treatment=aNONE rep=rep1\ track wgEncodeUwDgfGm12865Sig\ type bigWig 1.000000 20476.000000\ wgEncodeAwgTfbsHaibGm12878Pax5c20Pcr1xUniPk GM12878 PAX5 h narrowPeak GM12878 TFBS Uniform Peaks of PAX5-C20 from ENCODE/HudsonAlpha/Analysis 1 47 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of PAX5-C20 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 PAX5 h\ subGroups tier=a10 cellType=a10GM12878 factor=PAX5 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Pax5c20Pcr1xUniPk\ wgEncodeHaibTfbsGm12878Ets1Pcr1xPkRep1V2 GM78 ETS1 PCR1 1 broadPeak GM12878 ETS1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 47 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ETS1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 ETS1 PCR1 1\ subGroups view=Peaks factor=ETS1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Ets1Pcr1xPkRep1V2\ type broadPeak\ wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaPlusRawSigRep1 GM78 nuc pA- + 1 bigWig 1.000000 1853238.000000 GM12878 nucleus polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 47 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleus polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel GM78 nuc pA- + 1\ subGroups view=PlusSignal cellType=t1GM12878 localization=NUCLEUS rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 1853238.000000\ wgEncodeSydhTfbsGm12878NfyaIggmusPk GM78 NYA IgM narrowPeak GM12878 NF-YA IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 47 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 NF-YA IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 NYA IgM\ subGroups view=Peaks factor=NFYA cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878NfyaIggmusPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescH3k09me3StdSig H1-hESC H3K9m3 bigWig 0.040000 79621.703125 H1-hESC H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 47 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC H3K9m3\ subGroups view=Signal factor=H3K09ME3 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k09me3StdSig\ type bigWig 0.040000 79621.703125\ wgEncodeRikenCageH1hescCellPapPlusSignalRep1 H1ES cell pA+ + 1 bigWig 0.040000 7334.810059 H1-hESC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 47 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel H1ES cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t1H1HESC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageH1hescCellPapPlusSignalRep1\ type bigWig 0.040000 7334.810059\ wgEncodeUwAffyExonArrayH7esDiffa9dSimpleSignalRep2 H7-hESC 9d 2 broadPeak H7-hESC differentiated 9 d Exon Array Signal Rep 2 from ENCODE/UW 0 47 0 0 0 127 127 127 0 0 0 expression 1 longLabel H7-hESC differentiated 9 d Exon Array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel H7-hESC 9d 2\ subGroups cellType=t3H7HESC treatment=DIFFA9D rep=rep2\ track wgEncodeUwAffyExonArrayH7esDiffa9dSimpleSignalRep2\ type broadPeak\ wgEncodeAwgDnaseUwHcpepicUniPk HCPEpiC DNase narrowPeak HCPEpiC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 47 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HCPEpiC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HCPEpiC DNase\ subGroups tier=a30 cellType=HCPEpiC\ track wgEncodeAwgDnaseUwHcpepicUniPk\ wgEncodeOpenChromChipHepg2CmycPk HepG2 cMyc Pk narrowPeak HepG2 cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 47 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel HepG2 cMyc Pk\ subGroups treatment=AANONE view=Peaks factor=CMYC cellType=t2HEPG2\ track wgEncodeOpenChromChipHepg2CmycPk\ type narrowPeak\ wgEncodeHaibGenotypeHreRegionsRep2 HRE 2 bed 9 + HRE Copy number variants Replicate 2 from ENCODE/HAIB 0 47 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HRE Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HRE 2\ subGroups cellType=t3HRE obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeHreRegionsRep2\ type bed 9 +\ wgEncodeUwRepliSeqHuvecPkRep1 HUVEC Pk 1 bed 9 HUVEC Repli-seq Peaks Rep 1 from ENCODE/UW 0 47 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC Repli-seq Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPeaks off\ shortLabel HUVEC Pk 1\ subGroups view=v2Peaks cellType=t2HUVEC phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqHuvecPkRep1\ type bed 9\ wgEncodeCaltechRnaSeqK562R1x75dAlignsRep1V2 K562 1x75D A 1 bam K562 single read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 47 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 single read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel K562 1x75D A 1\ subGroups view=Aligns cellType=t1K562 insertLength=ilNa readType=r1x75D rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqK562R1x75dAlignsRep1V2\ type bam\ wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapContigs K562 cyto TAP C bed 6 K562 TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL 2 47 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel K562 cyto TAP C\ subGroups view=Contigs cellType=t1K562 localization=CYTOSOL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapContigs\ type bed 6\ wgEncodeUwDnaseLhcnm2HotspotsRep1 LHCNM2 Ht 1 broadPeak LHCN-M2 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 47 0 0 0 127 127 127 0 0 0 regulation 1 longLabel LHCN-M2 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel LHCNM2 Ht 1\ subGroups view=Hot cellType=t2LHCNM2 treatment=None rep=rep1\ track wgEncodeUwDnaseLhcnm2HotspotsRep1\ type broadPeak\ wgEncodeUwTfbsMcf7CtcfStdRawRep1 MCF7 CTCF Sg 1 bigWig 1.000000 15641.000000 MCF-7 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 47 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel MCF7 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t2MCF7 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsMcf7CtcfStdRawRep1\ type bigWig 1.000000 15641.000000\ wgEncodeOpenChromDnaseMcf7CtcfshrnaSig MCF7 CTCFshRNA DS bigWig 0.000000 0.653100 MCF-7 CTCF shRNA knockdown DNaseI HS Density Signal from ENCODE/Duke 2 47 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 CTCF shRNA knockdown DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel MCF7 CTCFshRNA DS\ subGroups view=SIG cellType=t2MCF7 treatment=CTCFSHRNA\ track wgEncodeOpenChromDnaseMcf7CtcfshrnaSig\ type bigWig 0.000000 0.653100\ wgEncodeHaibMethyl450Nb4SitesRep1 NB4 bed 9 NB4 Methylation 450K Bead Array from ENCODE/HAIB 1 47 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel NB4\ subGroups cellType=t3NB4 obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450Nb4SitesRep1\ type bed 9\ wgEncodeSydhHistonePbmcH3k04me3bUcdSig PBMC H3K4me3 bigWig 1.000000 37387.000000 PBMC H3K4me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 47 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PBMC H3K4me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel PBMC H3K4me3\ subGroups view=Signal factor=H3K04ME3B cellType=cPBMC control=UCD treatment=NONE\ track wgEncodeSydhHistonePbmcH3k04me3bUcdSig\ type bigWig 1.000000 37387.000000\ TruSight_One_v1 TruSight One V1.1 T bigBed 4 Illumina - TruSight ONE V1.1 Target Regions 0 47 22 62 164 138 158 209 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/TruSight_One_v1.1.bb\ color 22,62,164\ longLabel Illumina - TruSight ONE V1.1 Target Regions\ parent exomeProbesets off\ shortLabel TruSight One V1.1 T\ track TruSight_One_v1\ type bigBed 4\ dhcHumDerDenAncUtr5HighFreq Utr5 HiF bigBed 4 + Modern Human Derived (HighFreq), Denisova Ancestral: 5' UTR 0 47 0 0 200 127 127 227 0 0 0 denisova 1 color 0,0,200\ longLabel Modern Human Derived (HighFreq), Denisova Ancestral: 5' UTR\ parent dhcHumDerDenAncEns\ shortLabel Utr5 HiF\ subGroups view=Ens subset=Utr5 freq=HighFreq\ track dhcHumDerDenAncUtr5HighFreq\ wgEncodeUwHistoneCd20ro01778H3k04me3StdRawRep1 20+78 H3K4M3 Sg 1 bigWig 1.000000 3961.000000 CD20+ (RO 01778) H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 48 0 0 0 127 127 127 0 0 0 regulation 0 longLabel CD20+ (RO 01778) H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel 20+78 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t2BCELLSCD20RO01778 treatment=zNone rep=rep1\ track wgEncodeUwHistoneCd20ro01778H3k04me3StdRawRep1\ type bigWig 1.000000 3961.000000\ wgEncodeGisRnaPetA549CytosolPapPlusRawRep4 A549 cyto pA+ + 4 bigWig 1.000000 3905260.000000 A549 cytosol polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS 2 48 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 cytosol polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel A549 cyto pA+ + 4\ subGroups view=v2PlusRawSignal cellType=bA549 cloned=Free localization=cytosol rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetA549CytosolPapPlusRawRep4\ type bigWig 1.000000 3905260.000000\ encTfChipPkENCFF315VQM A549 SREBF1 narrowPeak Transcription Factor ChIP-seq Peaks of SREBF1 in A549 from ENCODE 3 (ENCFF315VQM) 1 48 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SREBF1 in A549 from ENCODE 3 (ENCFF315VQM)\ parent encTfChipPk off\ shortLabel A549 SREBF1\ subGroups cellType=A549 factor=SREBF1\ track encTfChipPkENCFF315VQM\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_ctss_rev AorticSmsToFgf2_06hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_reverse 0 48 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep2%20%28LK29%29.CNhs13368.12749-136A4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12749-136A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_tpm_rev AorticSmsToFgf2_06hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_reverse 1 48 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep2%20%28LK29%29.CNhs13368.12749-136A4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12749-136A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4\ urlLabel FANTOM5 Details:\ wgEncodeDukeAffyExonAosmcSimpleSignalRep1V2 AoSMC 1 bigBed 6 + AoSMC Exon array Signal Rep 1 from ENCODE/Duke 0 48 0 0 0 127 127 127 1 0 0 expression 1 longLabel AoSMC Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel AoSMC 1\ subGroups cellType=t3AOSMC treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonAosmcSimpleSignalRep1V2\ type bigBed 6 +\ pgNA06985indel CEU NA06985 indel pgSnp CEU NA06985 indel (Complete Genomics) 0 48 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA06985 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA06985 indel\ subGroups view=C_CG id=CB_div_GS06985 type=Indel\ track pgNA06985indel\ wgEncodeHaibRnaSeqEcc1Estradia4hAlnRep2 ECC-1 EST 2 bam ECC-1 ESTRADIOL 4 hr 10 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 48 0 0 0 127 127 127 0 0 0 expression 1 longLabel ECC-1 ESTRADIOL 4 hr 10 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel ECC-1 EST 2\ subGroups view=Alignments cellType=t3ECC1 treatment=EST10NM4H rep=rep2\ track wgEncodeHaibRnaSeqEcc1Estradia4hAlnRep2\ type bam\ wgEncodeOpenChromFaireEndometriumocBaseOverlapSignal Endometr FAIRE OS bigWig 0.000000 2355.000000 Endometrium FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 48 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Endometrium FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel Endometr FAIRE OS\ subGroups view=SIGBO cellType=t3ENDOMETRIUMOC treatment=AANONE\ track wgEncodeOpenChromFaireEndometriumocBaseOverlapSignal\ type bigWig 0.000000 2355.000000\ wgEncodeHaibMethylRrbsFibroblDukeSitesRep2 Fibrobl 2 bed 9 + Fibrobl Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 48 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Fibrobl Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Fibrobl 2\ subGroups cellType=t3FIBROBL obtainedBy=DUKE treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsFibroblDukeSitesRep2\ type bed 9 +\ wgEncodeUwDgfGm12865Raw GM12865 Raw bigWig 1.000000 134427.000000 GM12865 DNaseI DGF Raw Signal from ENCODE/UW 0 48 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12865 DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel GM12865 Raw\ subGroups view=zRaw cellType=t3GM12865 treatment=aNONE rep=rep1\ track wgEncodeUwDgfGm12865Raw\ type bigWig 1.000000 134427.000000\ wgEncodeAwgTfbsHaibGm12878Pax5n19Pcr1xUniPk GM12878 PAX5 h2 narrowPeak GM12878 TFBS Uniform Peaks of PAX5-N19 from ENCODE/HudsonAlpha/Analysis 1 48 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of PAX5-N19 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 PAX5 h2\ subGroups tier=a10 cellType=a10GM12878 factor=PAX5 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Pax5n19Pcr1xUniPk\ wgEncodeHaibTfbsGm12878Ets1Pcr1xRawRep1 GM78 ETS1 PCR1 1 bigWig 0.221942 138.214005 GM12878 ETS1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 48 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ETS1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 ETS1 PCR1 1\ subGroups view=RawSignal factor=ETS1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Ets1Pcr1xRawRep1\ type bigWig 0.221942 138.214005\ wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaPlusRawSigRep2 GM78 nuc pA- + 2 bigWig 1.000000 1589847.000000 GM12878 nucleus polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 48 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleus polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel GM78 nuc pA- + 2\ subGroups view=PlusSignal cellType=t1GM12878 localization=NUCLEUS rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 1589847.000000\ wgEncodeSydhTfbsGm12878NfyaIggmusSig GM78 NYA IgM bigWig 1.000000 6996.000000 GM12878 NF-YA IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 48 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 NF-YA IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 NYA IgM\ subGroups view=Signal factor=NFYA cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878NfyaIggmusSig\ type bigWig 1.000000 6996.000000\ wgEncodeBroadHistoneH1hescH3k27acStdPk H1-hESC H3K27ac broadPeak H1-hESC H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 48 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks\ shortLabel H1-hESC H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k27acStdPk\ type broadPeak\ wgEncodeRikenCageH1hescCellPapPlusSignalRep2 H1ES cell pA+ + 2 bigWig 0.050000 5374.350098 H1-hESC whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 48 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel H1ES cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t1H1HESC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageH1hescCellPapPlusSignalRep2\ type bigWig 0.050000 5374.350098\ wgEncodeUwAffyExonArrayHacSimpleSignalRep1 HAc 1 broadPeak HAc Exon array Signal Rep 1 from ENCODE/UW 0 48 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAc Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HAc 1\ subGroups cellType=t3HAC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHacSimpleSignalRep1\ type broadPeak\ wgEncodeAwgDnaseUwHct116UniPk HCT-116 DNase narrowPeak HCT-116 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 48 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HCT-116 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HCT-116 DNase\ subGroups tier=a30 cellType=HCT-116\ track wgEncodeAwgDnaseUwHct116UniPk\ wgEncodeOpenChromChipHepg2CmycSig HepG2 cMyc DS bigWig 0.000000 1.815900 HepG2 cMyc TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 48 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 cMyc TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel HepG2 cMyc DS\ subGroups treatment=AANONE view=SIG factor=CMYC cellType=t2HEPG2\ track wgEncodeOpenChromChipHepg2CmycSig\ type bigWig 0.000000 1.815900\ wgEncodeHaibGenotypeHrpeRegionsRep1 HRPEpiC 1 bed 9 + HRPEpiC Copy number variants Replicate 1 from ENCODE/HAIB 0 48 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HRPEpiC Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HRPEpiC 1\ subGroups cellType=t3HRPEPIC obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeHrpeRegionsRep1\ type bed 9 +\ wgEncodeUwRepliSeqHuvecValleysRep1 HUVEC Vly 1 bed 9 HUVEC Repli-seq Valleys Rep 1 from ENCODE/UW 0 48 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC Repli-seq Valleys Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewValleys off\ shortLabel HUVEC Vly 1\ subGroups view=v3Valleys cellType=t2HUVEC phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqHuvecValleysRep1\ type bed 9\ wgEncodeCaltechRnaSeqK562R1x75dAlignsRep2V2 K562 1x75D A 2 bam K562 single read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 48 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 single read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel K562 1x75D A 2\ subGroups view=Aligns cellType=t1K562 insertLength=ilNa readType=r1x75D rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqK562R1x75dAlignsRep2V2\ type bam\ wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapMinusRawRep1 K562 cyto TAP - 1 bigWig 1.000000 2803742.000000 K562 TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 48 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel K562 cyto TAP - 1\ subGroups view=MinusSignal cellType=t1K562 localization=CYTOSOL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapMinusRawRep1\ type bigWig 1.000000 2803742.000000\ wgEncodeUwDnaseLhcnm2Diff4dPkRep1 LHCNM2 dif4d Pk 1 narrowPeak LHCN-M2 DIFF 4 d DNaseI HS Peaks Rep 1 from ENCODE/UW 1 48 0 0 0 127 127 127 0 0 0 regulation 1 longLabel LHCN-M2 DIFF 4 d DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel LHCNM2 dif4d Pk 1\ subGroups view=Peaks cellType=t2LHCNM2 treatment=DIFF4D rep=rep1\ track wgEncodeUwDnaseLhcnm2Diff4dPkRep1\ type narrowPeak\ wgEncodeUwTfbsMcf7CtcfStdHotspotsRep2 MCF7 CTCF Ht 2 broadPeak MCF-7 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 48 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel MCF7 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t2MCF7 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsMcf7CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeOpenChromDnaseMcf7CtcfshrnaBaseOverlapSignal MCF7 CTCFshRNA OS bigWig 0.000000 319.000000 MCF-7 CTCF shRNA knockdown DNaseI HS Overlap Signal from ENCODE/Duke 2 48 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 CTCF shRNA knockdown DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel MCF7 CTCFshRNA OS\ subGroups view=SIGBO cellType=t2MCF7 treatment=CTCFSHRNA\ track wgEncodeOpenChromDnaseMcf7CtcfshrnaBaseOverlapSignal\ type bigWig 0.000000 319.000000\ wgEncodeHaibMethyl450NhaSitesRep1 NH-A bed 9 NH-A Methylation 450K Bead Array from ENCODE/HAIB 1 48 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NH-A Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel NH-A\ subGroups cellType=t3NHA obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450NhaSitesRep1\ type bed 9\ wgEncodeSydhHistonePbmcH3k9me3UcdPk PBMC H3K9me3 narrowPeak PBMC H3K9me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 48 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PBMC H3K9me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks off\ shortLabel PBMC H3K9me3\ subGroups view=Peaks factor=H3K09ME3 cellType=cPBMC control=UCD treatment=NONE\ track wgEncodeSydhHistonePbmcH3k9me3UcdPk\ type narrowPeak\ dhcHumDerDenAncSynFixed Syn Fxd bigBed 4 + Modern Human Derived (Fixed), Denisova Ancestral: Syn 0 48 0 200 0 127 227 127 0 0 0 denisova 1 color 0,200,0\ longLabel Modern Human Derived (Fixed), Denisova Ancestral: Syn\ parent dhcHumDerDenAncEns off\ shortLabel Syn Fxd\ subGroups view=Ens subset=ZLast_Syn freq=Fixed\ track dhcHumDerDenAncSynFixed\ trusight_exome_manifest_a TruSight Target bigBed 4 Illumina - TruSight Exome Target Regions 0 48 22 62 164 138 158 209 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/trusight_exome_manifest_a.bb\ color 22,62,164\ longLabel Illumina - TruSight Exome Target Regions\ parent exomeProbesets off\ shortLabel TruSight Target\ track trusight_exome_manifest_a\ type bigBed 4\ wgEncodeUwHistoneCd20ro01778H3k04me3StdHotspotsRep2 20+78 H3K4M3 Ht 2 broadPeak CD20+ (RO 01778) H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 49 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CD20+ (RO 01778) H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel 20+78 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t2BCELLSCD20RO01778 treatment=zNone rep=rep2\ track wgEncodeUwHistoneCd20ro01778H3k04me3StdHotspotsRep2\ type broadPeak\ wgEncodeGisRnaPetA549CytosolPapAlnRep3 A549 cyto pA+ A 3 bam A549 cytosol polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS 0 49 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 cytosol polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel A549 cyto pA+ A 3\ subGroups view=v3Alignments cellType=bA549 cloned=Free localization=cytosol rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetA549CytosolPapAlnRep3\ type bam\ encTfChipPkENCFF849UJR A549 SREBF2 narrowPeak Transcription Factor ChIP-seq Peaks of SREBF2 in A549 from ENCODE 3 (ENCFF849UJR) 1 49 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SREBF2 in A549 from ENCODE 3 (ENCFF849UJR)\ parent encTfChipPk off\ shortLabel A549 SREBF2\ subGroups cellType=A549 factor=SREBF2\ track encTfChipPkENCFF849UJR\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_ctss_fwd AorticSmsToFgf2_06hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_forward 0 49 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep3%20%28LK30%29.CNhs13576.12847-137C3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12847-137C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_tpm_fwd AorticSmsToFgf2_06hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_forward 1 49 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep3%20%28LK30%29.CNhs13576.12847-137C3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12847-137C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3\ urlLabel FANTOM5 Details:\ wgEncodeDukeAffyExonAosmcSimpleSignalRep2V2 AoSMC 2 bigBed 6 + AoSMC Exon array Signal Rep 2 from ENCODE/Duke 0 49 0 0 0 127 127 127 1 0 0 expression 1 longLabel AoSMC Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel AoSMC 2\ subGroups cellType=t3AOSMC treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonAosmcSimpleSignalRep2V2\ type bigBed 6 +\ pgNA06994 CEU NA06994 pgSnp CEU NA06994 (Complete Genomics) 0 49 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA06994 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA06994\ subGroups view=C_CG id=CB_div_GS06994 type=SNP\ track pgNA06994\ wgEncodeHaibRnaSeqEcc1Gen4hRawRep1 ECC-1 GEN 1 bigWig 0.248248 738.353027 ECC-1 GENISTEIN 4 hr 100 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 49 0 0 0 127 127 127 0 0 0 expression 0 longLabel ECC-1 GENISTEIN 4 hr 100 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel ECC-1 GEN 1\ subGroups view=RawSignal cellType=t3ECC1 treatment=GEN4H rep=rep1\ track wgEncodeHaibRnaSeqEcc1Gen4hRawRep1\ type bigWig 0.248248 738.353027\ wgEncodeOpenChromFaireFrontalcortexocPk Frntl crtx FAI Pk narrowPeak Frontal cortex FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 49 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Frontal cortex FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel Frntl crtx FAI Pk\ subGroups view=Peaks cellType=t3FRONTALCORTEXOC treatment=AANONE\ track wgEncodeOpenChromFaireFrontalcortexocPk\ type narrowPeak\ wgEncodeHaibMethylRrbsGm06990UwSitesRep1 GM06990 1 bed 9 + GM06990 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 49 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel GM06990 1\ subGroups cellType=t3GM06990 obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsGm06990UwSitesRep1\ type bed 9 +\ wgEncodeAwgTfbsHaibGm12878Pbx3Pcr1xUniPk GM12878 PBX3 narrowPeak GM12878 TFBS Uniform Peaks of Pbx3 from ENCODE/HudsonAlpha/Analysis 1 49 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of Pbx3 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 PBX3\ subGroups tier=a10 cellType=a10GM12878 factor=PBX3 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Pbx3Pcr1xUniPk\ wgEncodeHaibTfbsGm12878Ets1Pcr1xPkRep2V2 GM78 ETS1 PCR1 2 broadPeak GM12878 ETS1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 49 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ETS1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 ETS1 PCR1 2\ subGroups view=Peaks factor=ETS1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Ets1Pcr1xPkRep2V2\ type broadPeak\ wgEncodeCshlLongRnaSeqGm12878NucleusPapAlnRep1 GM78 nuc pA+ A 1 bam GM12878 nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 49 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel GM78 nuc pA+ A 1\ subGroups view=Alignments cellType=t1GM12878 localization=NUCLEUS rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878NucleusPapAlnRep1\ type bam\ wgEncodeSydhTfbsGm12878NfybIggmusPk GM78 NYB IgM narrowPeak GM12878 NF-YB IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 49 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 NF-YB IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 NYB IgM\ subGroups view=Peaks factor=NFYB cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878NfybIggmusPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescH3k27acStdSig H1-hESC H3K27ac bigWig 0.040000 19690.599609 H1-hESC H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 49 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal\ shortLabel H1-hESC H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k27acStdSig\ type bigWig 0.040000 19690.599609\ wgEncodeRikenCageH1hescCellPapMinusSignalRep1 H1ES cell pA+ - 1 bigWig 0.040000 13309.480469 H1-hESC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 49 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel H1ES cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t1H1HESC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageH1hescCellPapMinusSignalRep1\ type bigWig 0.040000 13309.480469\ wgEncodeUwDgfH7esHotspots H7-hESC Hot broadPeak H7-hESC DNaseI DGF Hotspots from ENCODE/UW 0 49 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel H7-hESC Hot\ subGroups view=Hotspots cellType=t3H7HESC treatment=aNONE rep=rep1\ track wgEncodeUwDgfH7esHotspots\ type broadPeak\ wgEncodeUwAffyExonArrayHacSimpleSignalRep2 HAc 2 broadPeak HAc Exon array Signal Rep 2 from ENCODE/UW 0 49 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAc Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HAc 2\ subGroups cellType=t3HAC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHacSimpleSignalRep2\ type broadPeak\ wgEncodeAwgDnaseUwHconfUniPk HConF DNase narrowPeak HConF DNaseI HS Uniform Peaks from ENCODE/Analysis 1 49 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HConF DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HConF DNase\ subGroups tier=a30 cellType=HConF\ track wgEncodeAwgDnaseUwHconfUniPk\ wgEncodeOpenChromChipHepg2CmycBaseOverlapSignal HepG2 cMyc OS bigWig 0.000000 558.000000 HepG2 cMyc TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 49 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 cMyc TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel HepG2 cMyc OS\ subGroups treatment=AANONE view=SIGBO factor=CMYC cellType=t2HEPG2\ track wgEncodeOpenChromChipHepg2CmycBaseOverlapSignal\ type bigWig 0.000000 558.000000\ wgEncodeHaibGenotypeHrpeRegionsRep2 HRPEpiC 2 bed 9 + HRPEpiC Copy number variants Replicate 2 from ENCODE/HAIB 0 49 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HRPEpiC Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HRPEpiC 2\ subGroups cellType=t3HRPEPIC obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeHrpeRegionsRep2\ type bed 9 +\ wgEncodeUwRepliSeqHuvecWaveSignalRep1 HUVEC Ws 1 bigWig -5.104345 89.079559 HUVEC Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW 2 49 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewWaveSignal\ shortLabel HUVEC Ws 1\ subGroups view=v4WaveSignal cellType=t2HUVEC phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqHuvecWaveSignalRep1\ type bigWig -5.104345 89.079559\ wgEncodeCaltechRnaSeqK562R1x75dTh1014UMinusRawRep1V4 K562 1x75D - 1 bigWig -29335.000000 -0.025000 K562 single read RNA-seq Minus Signal Rep 1 from ENCODE/Caltech 2 49 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 single read RNA-seq Minus Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewMinusSignal\ shortLabel K562 1x75D - 1\ subGroups view=MinusSignal cellType=t1K562 readType=r1x75D insertLength=ilNa rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqK562R1x75dTh1014UMinusRawRep1V4\ type bigWig -29335.000000 -0.025000\ wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapMinusRawRep2 K562 cyto TAP - 2 bigWig 1.000000 3546408.000000 K562 TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 49 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel K562 cyto TAP - 2\ subGroups view=MinusSignal cellType=t1K562 localization=CYTOSOL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapMinusRawRep2\ type bigWig 1.000000 3546408.000000\ wgEncodeUwDnaseLhcnm2PkRep1 LHCNM2 Pk 1 narrowPeak LHCN-M2 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 49 0 0 0 127 127 127 0 0 0 regulation 1 longLabel LHCN-M2 DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel LHCNM2 Pk 1\ subGroups view=Peaks cellType=t2LHCNM2 treatment=None rep=rep1\ track wgEncodeUwDnaseLhcnm2PkRep1\ type narrowPeak\ wgEncodeUwTfbsMcf7CtcfStdPkRep2 MCF7 CTCF Pk 2 narrowPeak MCF-7 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 49 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel MCF7 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t2MCF7 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsMcf7CtcfStdPkRep2\ type narrowPeak\ wgEncodeOpenChromDnaseMcf7HypoxlacPk MCF7 HypxLacA Pk narrowPeak MCF-7 Hypoxia LacAcid DNaseI HS Peaks from ENCODE/Duke 3 49 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 Hypoxia LacAcid DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel MCF7 HypxLacA Pk\ subGroups view=Peaks cellType=t2MCF7 treatment=HYPOXLAC\ track wgEncodeOpenChromDnaseMcf7HypoxlacPk\ type narrowPeak\ wgEncodeHaibMethyl450NhbeSitesRep1 NHBE bed 9 NHBE Methylation 450K Bead Array from ENCODE/HAIB 1 49 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHBE Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel NHBE\ subGroups cellType=t3NHBE obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450NhbeSitesRep1\ type bed 9\ wgEncodeSydhHistonePbmcH3k9me3UcdSig PBMC H3K9me3 bigWig 1.000000 155809.000000 PBMC H3K9me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 49 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PBMC H3K9me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel PBMC H3K9me3\ subGroups view=Signal factor=H3K09ME3 cellType=cPBMC control=UCD treatment=NONE\ track wgEncodeSydhHistonePbmcH3k9me3UcdSig\ type bigWig 1.000000 155809.000000\ dhcHumDerDenAncSynFixedDbSnp Syn FxS bigBed 4 + Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: Syn 0 49 0 200 0 127 227 127 0 0 0 denisova 1 color 0,200,0\ longLabel Modern Human Derived (Fixed+dbSNP), Denisova Ancestral: Syn\ parent dhcHumDerDenAncEns off\ shortLabel Syn FxS\ subGroups view=Ens subset=ZLast_Syn freq=FixedDbSnp\ track dhcHumDerDenAncSynFixedDbSnp\ Twist_Comp_Exome_Target Twist Compr. T bigBed Twist - Comprehensive Exome Panel Target Regions 1 49 254 97 0 254 176 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/TwistCompExomeTarget_hg19.bb\ color 254,97,0\ longLabel Twist - Comprehensive Exome Panel Target Regions\ parent exomeProbesets on\ shortLabel Twist Compr. T\ track Twist_Comp_Exome_Target\ type bigBed\ visibility dense\ wgEncodeUwHistoneCd20ro01778H3k04me3StdPkRep2 20+78 H3K4M3 Pk 2 narrowPeak CD20+ (RO 01778) H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 50 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CD20+ (RO 01778) H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel 20+78 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t2BCELLSCD20RO01778 treatment=zNone rep=rep2\ track wgEncodeUwHistoneCd20ro01778H3k04me3StdPkRep2\ type narrowPeak\ wgEncodeGisRnaPetA549CytosolPapAlnRep4 A549 cyto pA+ A 4 bam A549 cytosol polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS 0 50 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 cytosol polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel A549 cyto pA+ A 4\ subGroups view=v3Alignments cellType=bA549 cloned=Free localization=cytosol rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetA549CytosolPapAlnRep4\ type bam\ encTfChipPkENCFF747LKL A549 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in A549 from ENCODE 3 (ENCFF747LKL) 1 50 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TAF1 in A549 from ENCODE 3 (ENCFF747LKL)\ parent encTfChipPk off\ shortLabel A549 TAF1\ subGroups cellType=A549 factor=TAF1\ track encTfChipPkENCFF747LKL\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_ctss_rev AorticSmsToFgf2_06hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_reverse 0 50 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep3%20%28LK30%29.CNhs13576.12847-137C3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12847-137C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_tpm_rev AorticSmsToFgf2_06hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_reverse 1 50 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep3%20%28LK30%29.CNhs13576.12847-137C3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12847-137C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3\ urlLabel FANTOM5 Details:\ pgNA06994indel CEU NA06994 indel pgSnp CEU NA06994 indel (Complete Genomics) 0 50 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA06994 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA06994 indel\ subGroups view=C_CG id=CB_div_GS06994 type=Indel\ track pgNA06994indel\ wgEncodeDukeAffyExonChorionSimpleSignalRep1V2 Chorion 1 bigBed 6 + Chorion Exon array Signal Rep 1 from ENCODE/Duke 0 50 0 0 0 127 127 127 1 0 0 expression 1 longLabel Chorion Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Chorion 1\ subGroups cellType=t3CHORION treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonChorionSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeHaibRnaSeqEcc1Gen4hAlnRep1 ECC-1 GEN 1 bam ECC-1 GENISTEIN 4 hr 100 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 50 0 0 0 127 127 127 0 0 0 expression 1 longLabel ECC-1 GENISTEIN 4 hr 100 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel ECC-1 GEN 1\ subGroups view=Alignments cellType=t3ECC1 treatment=GEN4H rep=rep1\ track wgEncodeHaibRnaSeqEcc1Gen4hAlnRep1\ type bam\ wgEncodeOpenChromFaireFrontalcortexocSig Frntl crtx FAI DS bigWig 0.000000 0.592400 Frontal cortex FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 50 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Frontal cortex FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel Frntl crtx FAI DS\ subGroups view=SIG cellType=t3FRONTALCORTEXOC treatment=AANONE\ track wgEncodeOpenChromFaireFrontalcortexocSig\ type bigWig 0.000000 0.592400\ wgEncodeHaibMethylRrbsGm06990UwSitesRep2 GM06990 2 bed 9 + GM06990 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 50 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel GM06990 2\ subGroups cellType=t3GM06990 obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsGm06990UwSitesRep2\ type bed 9 +\ wgEncodeAwgTfbsHaibGm12878Pmlsc71910V0422111UniPk GM12878 PML narrowPeak GM12878 TFBS Uniform Peaks of PML_(SC-71910) from ENCODE/HudsonAlpha/Analysis 1 50 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of PML_(SC-71910) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 PML\ subGroups tier=a10 cellType=a10GM12878 factor=PML lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Pmlsc71910V0422111UniPk\ wgEncodeHaibTfbsGm12878Ets1Pcr1xRawRep2 GM78 ETS1 PCR1 2 bigWig 0.246279 116.305000 GM12878 ETS1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 50 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ETS1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 ETS1 PCR1 2\ subGroups view=RawSignal factor=ETS1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Ets1Pcr1xRawRep2\ type bigWig 0.246279 116.305000\ wgEncodeCshlLongRnaSeqGm12878NucleusPapAlnRep2 GM78 nuc pA+ A 2 bam GM12878 nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 50 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel GM78 nuc pA+ A 2\ subGroups view=Alignments cellType=t1GM12878 localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878NucleusPapAlnRep2\ type bam\ wgEncodeSydhTfbsGm12878NfybIggmusSig GM78 NYB IgM bigWig 1.000000 6516.000000 GM12878 NF-YB IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 50 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 NF-YB IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 NYB IgM\ subGroups view=Signal factor=NFYB cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878NfybIggmusSig\ type bigWig 1.000000 6516.000000\ wgEncodeBroadHistoneH1hescH3k27me3StdPk H1-hESC H3K27m3 broadPeak H1-hESC H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 50 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks\ shortLabel H1-hESC H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k27me3StdPk\ type broadPeak\ wgEncodeRikenCageH1hescCellPapMinusSignalRep2 H1ES cell pA+ - 2 bigWig 0.050000 11162.490234 H1-hESC whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 50 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel H1ES cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t1H1HESC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageH1hescCellPapMinusSignalRep2\ type bigWig 0.050000 11162.490234\ wgEncodeUwDgfH7esPkV2 H7-hESC Pk narrowPeak H7-hESC DNaseI DGF Peaks from ENCODE/UW 0 50 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC DNaseI DGF Peaks from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewPeaks off\ shortLabel H7-hESC Pk\ subGroups view=Peaks cellType=t3H7HESC treatment=aNONE rep=rep1\ track wgEncodeUwDgfH7esPkV2\ type narrowPeak\ wgEncodeUwAffyExonArrayHaeSimpleSignalRep1 HAEpiC 1 broadPeak HAEpiC Exon array Signal Rep 1 from ENCODE/UW 0 50 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAEpiC Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HAEpiC 1\ subGroups cellType=t3HAEPIC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHaeSimpleSignalRep1\ type broadPeak\ wgEncodeAwgDnaseUwHeepicUniPk HEEpiC DNase narrowPeak HEEpiC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 50 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HEEpiC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HEEpiC DNase\ subGroups tier=a30 cellType=HEEpiC\ track wgEncodeAwgDnaseUwHeepicUniPk\ wgEncodeOpenChromChipHepg2CtcfPk HepG2 CTCF Pk narrowPeak HepG2 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 50 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel HepG2 CTCF Pk\ subGroups treatment=AANONE view=Peaks factor=CTCF cellType=t2HEPG2\ track wgEncodeOpenChromChipHepg2CtcfPk\ type narrowPeak\ wgEncodeHaibGenotypeHsmmRegionsRep3 HSMM 1 bed 9 + HSMM Copy number variants Replicate 1 (Lab Rep 3) from ENCODE/HAIB 0 50 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HSMM Copy number variants Replicate 1 (Lab Rep 3) from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HSMM 1\ subGroups cellType=t3HSMM obtainedBy=Duke treatment=None rep=rep1\ track wgEncodeHaibGenotypeHsmmRegionsRep3\ type bed 9 +\ wgEncodeUwRepliSeqHuvecSumSignalRep1 HUVEC Sd 1 bigWig 1.000000 2431.000000 HUVEC Repli-seq Summed Densities Rep 1 from ENCODE/UW 0 50 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Repli-seq Summed Densities Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewSumSignal off\ shortLabel HUVEC Sd 1\ subGroups view=v5SumSignal cellType=t2HUVEC phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqHuvecSumSignalRep1\ type bigWig 1.000000 2431.000000\ wgEncodeCaltechRnaSeqK562R1x75dTh1014UMinusRawRep2V4 K562 1x75D - 2 bigWig -26092.800781 -0.018500 K562 single read RNA-seq Minus Signal Rep 2 from ENCODE/Caltech 2 50 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 single read RNA-seq Minus Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewMinusSignal\ shortLabel K562 1x75D - 2\ subGroups view=MinusSignal cellType=t1K562 readType=r1x75D insertLength=ilNa rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqK562R1x75dTh1014UMinusRawRep2V4\ type bigWig -26092.800781 -0.018500\ wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapPlusRawRep1 K562 cyto TAP + 1 bigWig 1.000000 1944213.000000 K562 TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 50 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel K562 cyto TAP + 1\ subGroups view=PlusSignal cellType=t1K562 localization=CYTOSOL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapPlusRawRep1\ type bigWig 1.000000 1944213.000000\ wgEncodeUwDnaseLhcnm2Diff4dRawRep1 LHCNM2 dif4d Sg 1 bigWig 1.000000 148959.000000 LHCN-M2 DIFF 4 d DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 50 0 0 0 127 127 127 0 0 0 regulation 0 longLabel LHCN-M2 DIFF 4 d DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel LHCNM2 dif4d Sg 1\ subGroups view=zRSig cellType=t2LHCNM2 treatment=DIFF4D rep=rep1\ track wgEncodeUwDnaseLhcnm2Diff4dRawRep1\ type bigWig 1.000000 148959.000000\ wgEncodeUwTfbsMcf7CtcfStdRawRep2 MCF7 CTCF Sg 2 bigWig 1.000000 15951.000000 MCF-7 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 50 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel MCF7 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t2MCF7 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsMcf7CtcfStdRawRep2\ type bigWig 1.000000 15951.000000\ wgEncodeOpenChromDnaseMcf7HypoxlacSig MCF7 HypxLacA DS bigWig 0.000000 0.741200 MCF-7 Hypoxia LacAcid DNaseI HS Density Signal from ENCODE/Duke 2 50 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 Hypoxia LacAcid DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel MCF7 HypxLacA DS\ subGroups view=SIG cellType=t2MCF7 treatment=HYPOXLAC\ track wgEncodeOpenChromDnaseMcf7HypoxlacSig\ type bigWig 0.000000 0.741200\ wgEncodeHaibMethyl450NhdfneoSitesRep1 NHDF-neo bed 9 NHDF-neo Methylation 450K Bead Array from ENCODE/HAIB 1 50 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel NHDF-neo\ subGroups cellType=t3NHDFNEO obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450NhdfneoSitesRep1\ type bed 9\ wgEncodeSydhHistonePbmcH3k27me3bUcdPk PBMC H3K27me3 narrowPeak PBMC H3K27me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 50 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PBMC H3K27me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks off\ shortLabel PBMC H3K27me3\ subGroups view=Peaks factor=H3K27me3B cellType=cPBMC control=UCD treatment=NONE\ track wgEncodeSydhHistonePbmcH3k27me3bUcdPk\ type narrowPeak\ dhcHumDerDenAncSynHighFreq Syn HiF bigBed 4 + Modern Human Derived (HighFreq), Denisova Ancestral: Syn 0 50 0 200 0 127 227 127 0 0 0 denisova 1 color 0,200,0\ longLabel Modern Human Derived (HighFreq), Denisova Ancestral: Syn\ parent dhcHumDerDenAncEns off\ shortLabel Syn HiF\ subGroups view=Ens subset=ZLast_Syn freq=HighFreq\ track dhcHumDerDenAncSynHighFreq\ Twist_Exome_Target Twist Core T bigBed Twist - Core Exome Panel Target Regions 1 50 254 97 0 254 176 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/TwistExomeTarget_hg19.bb\ color 254,97,0\ longLabel Twist - Core Exome Panel Target Regions\ parent exomeProbesets off\ shortLabel Twist Core T\ track Twist_Exome_Target\ type bigBed\ visibility dense\ wgEncodeUwHistoneCd20ro01778H3k04me3StdRawRep2 20+78 H3K4M3 Sg 2 bigWig 1.000000 4152.000000 CD20+ (RO 01778) H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 51 0 0 0 127 127 127 0 0 0 regulation 0 longLabel CD20+ (RO 01778) H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel 20+78 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t2BCELLSCD20RO01778 treatment=zNone rep=rep2\ track wgEncodeUwHistoneCd20ro01778H3k04me3StdRawRep2\ type bigWig 1.000000 4152.000000\ wgEncodeGisRnaPetA549NucleusPapClusters A549 nucl pA+ bed 6 + A549 nucleus polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS 2 51 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 nucleus polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel A549 nucl pA+\ subGroups view=v1Clusters rep=rep1 rank=none cellType=bA549 cloned=Free localization=nucleus rnaExtract=PAP\ track wgEncodeGisRnaPetA549NucleusPapClusters\ type bed 6 +\ encTfChipPkENCFF672FQU A549 TCF12 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in A549 from ENCODE 3 (ENCFF672FQU) 1 51 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TCF12 in A549 from ENCODE 3 (ENCFF672FQU)\ parent encTfChipPk off\ shortLabel A549 TCF12\ subGroups cellType=A549 factor=TCF12\ track encTfChipPkENCFF672FQU\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_ctss_fwd AorticSmsToIL1b_00hr00minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_forward 0 51 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep1%20%28LK31%29.CNhs13349.12652-134H6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12652-134H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_tpm_fwd AorticSmsToIL1b_00hr00minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_forward 1 51 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep1%20%28LK31%29.CNhs13349.12652-134H6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12652-134H6 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToIL1b_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6\ urlLabel FANTOM5 Details:\ pgNA07357 CEU NA07357 pgSnp CEU NA07357 (Complete Genomics) 0 51 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA07357 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA07357\ subGroups view=C_CG id=CB_div_GS07357 type=SNP\ track pgNA07357\ wgEncodeDukeAffyExonCllSimpleSignalRep1V2 CLL 1 bigBed 6 + CLL Exon array Signal Rep 1 from ENCODE/Duke 0 51 0 0 0 127 127 127 1 0 0 expression 1 longLabel CLL Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel CLL 1\ subGroups cellType=t3CLL treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonCllSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeHaibRnaSeqEcc1Gen4hRawRep2 ECC-1 GEN 2 bigWig 0.204548 865.341980 ECC-1 GENISTEIN 4 hr 100 nM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 51 0 0 0 127 127 127 0 0 0 expression 0 longLabel ECC-1 GENISTEIN 4 hr 100 nM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel ECC-1 GEN 2\ subGroups view=RawSignal cellType=t3ECC1 treatment=GEN4H rep=rep2\ track wgEncodeHaibRnaSeqEcc1Gen4hRawRep2\ type bigWig 0.204548 865.341980\ wgEncodeOpenChromFaireFrontalcortexocBaseOverlapSignal Frntl crtx FAI OS bigWig 0.000000 2783.000000 Frontal cortex FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 51 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Frontal cortex FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel Frntl crtx FAI OS\ subGroups view=SIGBO cellType=t3FRONTALCORTEXOC treatment=AANONE\ track wgEncodeOpenChromFaireFrontalcortexocBaseOverlapSignal\ type bigWig 0.000000 2783.000000\ wgEncodeAwgTfbsHaibGm12878Pol24h8Pcr1xUniPk GM12878 POLR2A h narrowPeak GM12878 TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis 1 51 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel GM12878 POLR2A h\ subGroups tier=a10 cellType=a10GM12878 factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Pol24h8Pcr1xUniPk\ wgEncodeHaibMethylRrbsGm12878ximatHaibSitesRep1 GM12878-XiM 1 bed 9 + GM12878-XiMat Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 51 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12878-XiMat Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel GM12878-XiM 1\ subGroups cellType=t3GM12878XIMAT obtainedBy=HAIB treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsGm12878ximatHaibSitesRep1\ type bed 9 +\ wgEncodeHaibTfbsGm12878Foxm1sc502V0422111PkRep1 GM78 FOXM1 V11 1 broadPeak GM12878 FOXM1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 51 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 FOXM1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 FOXM1 V11 1\ subGroups view=Peaks factor=FOXM1SC502 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Foxm1sc502V0422111PkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878Nrf1IggmusPk GM78 Nrf1 IgM narrowPeak GM12878 Nrf1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 51 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Nrf1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 Nrf1 IgM\ subGroups view=Peaks factor=NRF1 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Nrf1IggmusPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqGm12878NucleusPapContigs GM78 nuc pA+ C bed 6 + GM12878 nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 51 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel GM78 nuc pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1GM12878 localization=NUCLEUS rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqGm12878NucleusPapContigs\ type bed 6 +\ wgEncodeBroadHistoneH1hescH3k27me3StdSig H1-hESC H3K27m3 bigWig 0.040000 10269.200195 H1-hESC H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 51 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal\ shortLabel H1-hESC H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k27me3StdSig\ type bigWig 0.040000 10269.200195\ wgEncodeRikenCageH1hescCellPapAlnRep1 H1ES cell pA+ A 1 bam H1-hESC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 51 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel H1ES cell pA+ A 1\ subGroups view=Alignments cellType=t1H1HESC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageH1hescCellPapAlnRep1\ type bam\ wgEncodeUwDgfH7esSig H7-hESC Sig bigWig 1.000000 99682.000000 H7-hESC DNaseI DGF Per-base Signal from ENCODE/UW 2 51 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel H7-hESC Sig\ subGroups view=Signal cellType=t3H7HESC treatment=aNONE rep=rep1\ track wgEncodeUwDgfH7esSig\ type bigWig 1.000000 99682.000000\ wgEncodeUwAffyExonArrayHaeSimpleSignalRep2 HAEpiC 2 broadPeak HAEpiC Exon array Signal Rep 2 from ENCODE/UW 0 51 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAEpiC Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HAEpiC 2\ subGroups cellType=t3HAEPIC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHaeSimpleSignalRep2\ type broadPeak\ wgEncodeOpenChromChipHepg2CtcfSig HepG2 CTCF DS bigWig 0.000000 7.433400 HepG2 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 51 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel HepG2 CTCF DS\ subGroups treatment=AANONE view=SIG factor=CTCF cellType=t2HEPG2\ track wgEncodeOpenChromChipHepg2CtcfSig\ type bigWig 0.000000 7.433400\ wgEncodeAwgDnaseUwHffUniPk HFF DNase narrowPeak HFF DNaseI HS Uniform Peaks from ENCODE/Analysis 1 51 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HFF DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HFF DNase\ subGroups tier=a30 cellType=HFF\ track wgEncodeAwgDnaseUwHffUniPk\ wgEncodeHaibGenotypeHsmmtRegionsRep2 HSMMtube 1 bed 9 + HSMM tube Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB 0 51 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HSMM tube Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HSMMtube 1\ subGroups cellType=t3HSMMTUBE obtainedBy=Duke treatment=None rep=rep1\ track wgEncodeHaibGenotypeHsmmtRegionsRep2\ type bed 9 +\ wgEncodeUwRepliSeqImr90G1bPctSignalRep1 IMR90 G1b 1 bigWig 1.000000 100.000000 IMR90 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 51 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel IMR90 G1b 1\ subGroups view=v1PctSignal cellType=t2IMR90 phase=p1G1B rep=rep1\ track wgEncodeUwRepliSeqImr90G1bPctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeCaltechRnaSeqK562R1x75dTh1014UPlusRawRep1V4 K562 1x75D + 1 bigWig 0.018500 59423.332031 K562 single read RNA-seq Plus Signal Rep 1 from ENCODE/Caltech 2 51 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 single read RNA-seq Plus Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewPlusSignal\ shortLabel K562 1x75D + 1\ subGroups view=PlusSignal cellType=t1K562 readType=r1x75D insertLength=ilNa rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqK562R1x75dTh1014UPlusRawRep1V4\ type bigWig 0.018500 59423.332031\ wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapPlusRawRep2 K562 cyto TAP + 2 bigWig 1.000000 3541956.000000 K562 TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 51 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel K562 cyto TAP + 2\ subGroups view=PlusSignal cellType=t1K562 localization=CYTOSOL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapPlusRawRep2\ type bigWig 1.000000 3541956.000000\ wgEncodeUwDnaseLhcnm2RawRep1 LHCNM2 Sg 1 bigWig 1.000000 38573.000000 LHCN-M2 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 51 0 0 0 127 127 127 0 0 0 regulation 0 longLabel LHCN-M2 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel LHCNM2 Sg 1\ subGroups view=zRSig cellType=t2LHCNM2 treatment=None rep=rep1\ track wgEncodeUwDnaseLhcnm2RawRep1\ type bigWig 1.000000 38573.000000\ wgEncodeOpenChromDnaseMcf7HypoxlacBaseOverlapSignal MCF7 HypxLacA OS bigWig 0.000000 231.000000 MCF-7 Hypoxia LacAcid DNaseI HS Overlap Signal from ENCODE/Duke 2 51 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 Hypoxia LacAcid DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel MCF7 HypxLacA OS\ subGroups view=SIGBO cellType=t2MCF7 treatment=HYPOXLAC\ track wgEncodeOpenChromDnaseMcf7HypoxlacBaseOverlapSignal\ type bigWig 0.000000 231.000000\ wgEncodeUwTfbsMcf7InputStdRawRep1 MCF7 In Sg 1 bigWig 1.000000 25597.000000 MCF-7 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 51 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel MCF7 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t2MCF7 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsMcf7InputStdRawRep1\ type bigWig 1.000000 25597.000000\ wgEncodeHaibMethyl450Nt2d1SitesRep1 NT2-D1 bed 9 NT2-D1 Methylation 450K Bead Array from ENCODE/HAIB 1 51 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2-D1 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel NT2-D1\ subGroups cellType=t3NT2D1 obtainedBy=Stanford treatment=zNONE\ track wgEncodeHaibMethyl450Nt2d1SitesRep1\ type bed 9\ wgEncodeSydhHistonePbmcH3k27me3bUcdSig PBMC H3K27me3 bigWig 1.000000 23277.000000 PBMC H3K27me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 51 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PBMC H3K27me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel PBMC H3K27me3\ subGroups view=Signal factor=H3K27me3B cellType=cPBMC control=UCD treatment=NONE\ track wgEncodeSydhHistonePbmcH3k27me3bUcdSig\ type bigWig 1.000000 23277.000000\ Twist_Exome_Target2 Twist Exome 2.0 bigBed Twist - Exome 2.0 Panel Target Regions 1 51 254 97 0 254 176 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/TwistExome21.bb\ color 254,97,0\ longLabel Twist - Exome 2.0 Panel Target Regions\ parent exomeProbesets on\ shortLabel Twist Exome 2.0\ track Twist_Exome_Target2\ type bigBed\ visibility dense\ wgEncodeUwHistoneCd20ro01778InputStdRawRep1 20+78 In Sg 1 bigWig 1.000000 15457.000000 CD20+ (RO 01778) Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 52 0 0 0 127 127 127 0 0 0 regulation 0 longLabel CD20+ (RO 01778) Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel 20+78 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t2BCELLSCD20RO01778 treatment=zNone rep=rep1\ track wgEncodeUwHistoneCd20ro01778InputStdRawRep1\ type bigWig 1.000000 15457.000000\ wgEncodeGisRnaPetA549NucleusPapMinusRawRep3 A549 nucl pA+ - 3 bigWig 1.000000 4591630.000000 A549 nucleus polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS 2 52 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 nucleus polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel A549 nucl pA+ - 3\ subGroups view=v2MinusRawSignal cellType=bA549 cloned=Free localization=nucleus rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetA549NucleusPapMinusRawRep3\ type bigWig 1.000000 4591630.000000\ encTfChipPkENCFF754GUT A549 USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in A549 from ENCODE 3 (ENCFF754GUT) 1 52 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of USF2 in A549 from ENCODE 3 (ENCFF754GUT)\ parent encTfChipPk off\ shortLabel A549 USF2\ subGroups cellType=A549 factor=USF2\ track encTfChipPkENCFF754GUT\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_ctss_rev AorticSmsToIL1b_00hr00minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_reverse 0 52 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep1%20%28LK31%29.CNhs13349.12652-134H6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12652-134H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_tpm_rev AorticSmsToIL1b_00hr00minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_reverse 1 52 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep1%20%28LK31%29.CNhs13349.12652-134H6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12652-134H6 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToIL1b_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsMonocd14ro1746InputStdRawRep1 CD14+ In Sg 1 bigWig 1.000000 3306.000000 Monocytes-CD14+ RO1746 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 52 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Monocytes-CD14+ RO1746 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel CD14+ In Sg 1\ subGroups view=zRSig factor=zInput cellType=t2MONOCYTESCD14RO01746 treatment=aNone rep=rep1\ track wgEncodeUwTfbsMonocd14ro1746InputStdRawRep1\ type bigWig 1.000000 3306.000000\ pgNA07357indel CEU NA07357 indel pgSnp CEU NA07357 indel (Complete Genomics) 0 52 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA07357 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA07357 indel\ subGroups view=C_CG id=CB_div_GS07357 type=Indel\ track pgNA07357indel\ wgEncodeDukeAffyExonCllSimpleSignalRep2V2 CLL 2 bigBed 6 + CLL Exon array Signal Rep 2 from ENCODE/Duke 0 52 0 0 0 127 127 127 1 0 0 expression 1 longLabel CLL Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel CLL 2\ subGroups cellType=t3CLL treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonCllSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeHaibRnaSeqEcc1Gen4hAlnRep2 ECC-1 GEN 2 bam ECC-1 GENISTEIN 4 hr 100 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 52 0 0 0 127 127 127 0 0 0 expression 1 longLabel ECC-1 GENISTEIN 4 hr 100 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel ECC-1 GEN 2\ subGroups view=Alignments cellType=t3ECC1 treatment=GEN4H rep=rep2\ track wgEncodeHaibRnaSeqEcc1Gen4hAlnRep2\ type bam\ wgEncodeOpenChromFaireGlioblaPk Gliobla FAIRE Pk narrowPeak Gliobla FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 52 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Gliobla FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel Gliobla FAIRE Pk\ subGroups view=Peaks cellType=t3GLIOBLA treatment=AANONE\ track wgEncodeOpenChromFaireGlioblaPk\ type narrowPeak\ wgEncodeAwgTfbsHaibGm12878Pol2Pcr2xUniPk GM12878 POLR2A h2 narrowPeak GM12878 TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis 1 52 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 POLR2A h2\ subGroups tier=a10 cellType=a10GM12878 factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Pol2Pcr2xUniPk\ wgEncodeHaibMethylRrbsGm12878ximatHaibSitesRep2 GM12878-XiM 2 bed 9 + GM12878-XiMat Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 52 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12878-XiMat Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel GM12878-XiM 2\ subGroups cellType=t3GM12878XIMAT obtainedBy=HAIB treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsGm12878ximatHaibSitesRep2\ type bed 9 +\ wgEncodeHaibTfbsGm12878Foxm1sc502V0422111RawRep1 GM78 FOXM1 V11 1 bigWig 0.107366 117.995003 GM12878 FOXM1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 52 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 FOXM1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 FOXM1 V11 1\ subGroups view=RawSignal factor=FOXM1SC502 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Foxm1sc502V0422111RawRep1\ type bigWig 0.107366 117.995003\ wgEncodeSydhTfbsGm12878Nrf1IggmusSig GM78 Nrf1 IgM bigWig 1.000000 9876.000000 GM12878 Nrf1 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 52 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Nrf1 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 Nrf1 IgM\ subGroups view=Signal factor=NRF1 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Nrf1IggmusSig\ type bigWig 1.000000 9876.000000\ wgEncodeCshlLongRnaSeqGm12878NucleusPapJunctions GM78 nuc pA+ J bed 6 + GM12878 nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 52 153 38 0 204 146 127 0 0 0 expression 1 color 153,38,0\ longLabel GM12878 nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel GM78 nuc pA+ J\ subGroups view=Junctions cellType=t1GM12878 localization=NUCLEUS rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqGm12878NucleusPapJunctions\ type bed 6 +\ wgEncodeBroadHistoneH1hescH3k36me3StdPk H1-hESC H3K36m3 broadPeak H1-hESC H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 52 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks\ shortLabel H1-hESC H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k36me3StdPk\ type broadPeak\ wgEncodeRikenCageH1hescCellPapAlnRep2 H1ES cell pA+ A 2 bam H1-hESC whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 52 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel H1ES cell pA+ A 2\ subGroups view=Alignments cellType=t1H1HESC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageH1hescCellPapAlnRep2\ type bam\ wgEncodeUwDgfH7esRaw H7-hESC Raw bigWig 1.000000 326258.000000 H7-hESC DNaseI DGF Raw Signal from ENCODE/UW 0 52 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel H7-hESC Raw\ subGroups view=zRaw cellType=t3H7HESC treatment=aNONE rep=rep1\ track wgEncodeUwDgfH7esRaw\ type bigWig 1.000000 326258.000000\ wgEncodeUwAffyExonArrayHahSimpleSignalRep1 HA-h 1 broadPeak HA-h Exon-array Signal Rep 1 from ENCODE/UW 0 52 0 0 0 127 127 127 0 0 0 expression 1 longLabel HA-h Exon-array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HA-h 1\ subGroups cellType=t3HAH rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHahSimpleSignalRep1\ type broadPeak\ wgEncodeOpenChromChipHepg2CtcfBaseOverlapSignal HepG2 CTCF OS bigWig 0.000000 629.000000 HepG2 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 52 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel HepG2 CTCF OS\ subGroups treatment=AANONE view=SIGBO factor=CTCF cellType=t2HEPG2\ track wgEncodeOpenChromChipHepg2CtcfBaseOverlapSignal\ type bigWig 0.000000 629.000000\ wgEncodeAwgDnaseUwHffmycUniPk HFF-Myc DNase narrowPeak HFF-Myc DNaseI HS Uniform Peaks from ENCODE/Analysis 1 52 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HFF-Myc DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HFF-Myc DNase\ subGroups tier=a30 cellType=HFF-Myc\ track wgEncodeAwgDnaseUwHffmycUniPk\ wgEncodeHaibGenotypeHtr8RegionsRep1 HTR8svn 1 bed 9 + HTR8svn Copy number variants Replicate 1 from ENCODE/HAIB 0 52 0 0 0 127 127 127 0 0 0 varRep 1 longLabel HTR8svn Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel HTR8svn 1\ subGroups cellType=t3HTR8SVN obtainedBy=Duke treatment=None rep=rep1\ track wgEncodeHaibGenotypeHtr8RegionsRep1\ type bed 9 +\ wgEncodeUwRepliSeqImr90S1PctSignalRep1 IMR90 S1 1 bigWig 1.000000 100.000000 IMR90 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 52 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel IMR90 S1 1\ subGroups view=v1PctSignal cellType=t2IMR90 phase=p2S1 rep=rep1\ track wgEncodeUwRepliSeqImr90S1PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeCaltechRnaSeqK562R1x75dTh1014UPlusRawRep2V4 K562 1x75D + 2 bigWig 0.018500 44144.000000 K562 single read RNA-seq Plus Signal Rep 2 from ENCODE/Caltech 2 52 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 single read RNA-seq Plus Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewPlusSignal\ shortLabel K562 1x75D + 2\ subGroups view=PlusSignal cellType=t1K562 readType=r1x75D insertLength=ilNa rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqK562R1x75dTh1014UPlusRawRep2V4\ type bigWig 0.018500 44144.000000\ wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapContigs K562 nlus TAP C bed 6 K562 TAP-only nucleolus small RNA-seq Contigs from ENCODE/CSHL 2 52 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 TAP-only nucleolus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel K562 nlus TAP C\ subGroups view=Contigs cellType=t1K562 localization=NUCLEOLUS protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapContigs\ type bed 6\ wgEncodeUwDnaseLhcnm2Diff4dHotspotsRep2 LHCNM2 dif4d Ht 2 broadPeak LHCN-M2 DIFF 4 d DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 52 0 0 0 127 127 127 0 0 0 regulation 1 longLabel LHCN-M2 DIFF 4 d DNaseI HS HotSpots Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel LHCNM2 dif4d Ht 2\ subGroups view=Hot cellType=t2LHCNM2 treatment=DIFF4D rep=rep2\ track wgEncodeUwDnaseLhcnm2Diff4dHotspotsRep2\ type broadPeak\ wgEncodeOpenChromDnaseMcf7HypoxlacconPk MCF7 HypxCtrl Pk narrowPeak MCF-7 Hypoxia LacAcid Control DNaseI HS Peaks from ENCODE/Duke 3 52 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 Hypoxia LacAcid Control DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel MCF7 HypxCtrl Pk\ subGroups view=Peaks cellType=t2MCF7 treatment=HYPOXLACCON\ track wgEncodeOpenChromDnaseMcf7HypoxlacconPk\ type narrowPeak\ wgEncodeHaibMethyl450Ovcar3SitesRep1 ovcar-3 bed 9 ovcar-3 Methylation 450K Bead Array from ENCODE/HAIB 1 52 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ovcar-3 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel ovcar-3\ subGroups cellType=t3OVCAR3 obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450Ovcar3SitesRep1\ type bed 9\ wgEncodeSydhHistonePbmcInputUcdSig PBMC Input bigWig 1.000000 10456.000000 PBMC Input Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 52 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PBMC Input Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel PBMC Input\ subGroups view=Signal factor=INPUT cellType=cPBMC control=UCD treatment=NONE\ track wgEncodeSydhHistonePbmcInputUcdSig\ type bigWig 1.000000 10456.000000\ Twist_Exome_RefSeq_Targets Twist RefSeq T bigBed Twist - RefSeq Exome Panel Target Regions 1 52 254 97 0 254 176 127 0 0 0 map 1 bigDataUrl /gbdb/hg19/exomeProbesets/TwistExomeRefSeqTargets_hg19.bb\ color 254,97,0\ longLabel Twist - RefSeq Exome Panel Target Regions\ parent exomeProbesets off\ shortLabel Twist RefSeq T\ track Twist_Exome_RefSeq_Targets\ type bigBed\ visibility dense\ wgEncodeUwHistoneCd20ro01794H3k04me3StdHotspotsRep3 20+94 H3K4M3 Ht 3 broadPeak CD20+ (RO 01794) H3K4me3 Histone Mod ChIP-seq Hotspots 3 from ENCODE/UW 2 53 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CD20+ (RO 01794) H3K4me3 Histone Mod ChIP-seq Hotspots 3 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel 20+94 H3K4M3 Ht 3\ subGroups view=Hot factor=H3K04ME3 cellType=t2BCELLSCD20RO01794 treatment=zNone rep=rep3\ track wgEncodeUwHistoneCd20ro01794H3k04me3StdHotspotsRep3\ type broadPeak\ wgEncodeGisRnaPetA549NucleusPapMinusRawRep4 A549 nucl pA+ - 4 bigWig 1.000000 3575480.000000 A549 nucleus polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS 2 53 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 nucleus polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel A549 nucl pA+ - 4\ subGroups view=v2MinusRawSignal cellType=bA549 cloned=Free localization=nucleus rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetA549NucleusPapMinusRawRep4\ type bigWig 1.000000 3575480.000000\ encTfChipPkENCFF713ISJ A549 YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in A549 from ENCODE 3 (ENCFF713ISJ) 1 53 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of YY1 in A549 from ENCODE 3 (ENCFF713ISJ)\ parent encTfChipPk off\ shortLabel A549 YY1\ subGroups cellType=A549 factor=YY1\ track encTfChipPkENCFF713ISJ\ wgEncodeUwTfbsAg04449CtcfStdHotspotsRep1 AG49 CTCF Ht 1 broadPeak AG04449 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 53 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04449 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel AG49 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3AG04449 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg04449CtcfStdHotspotsRep1\ type broadPeak\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_ctss_fwd AorticSmsToIL1b_00hr00minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_forward 0 53 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep2%20%28LK32%29.CNhs13369.12750-136A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12750-136A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_tpm_fwd AorticSmsToIL1b_00hr00minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_forward 1 53 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep2%20%28LK32%29.CNhs13369.12750-136A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12750-136A5 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToIL1b_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5\ urlLabel FANTOM5 Details:\ wgEncodeHaibGenotypeBcjejunumh12817nRegionsRep1 BC Jejunum 1 bed 9 + BC_Jejunum_H12817N Copy number variants Replicate 1 from ENCODE/HAIB 0 53 0 0 0 127 127 127 0 0 0 varRep 1 longLabel BC_Jejunum_H12817N Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel BC Jejunum 1\ subGroups cellType=t3JEJUNUMBCH12817N obtainedBy=HudsonAlpha treatment=None rep=rep1\ track wgEncodeHaibGenotypeBcjejunumh12817nRegionsRep1\ type bed 9 +\ pgNA10851 CEU NA10851 pgSnp CEU NA10851 (Complete Genomics) 0 53 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA10851 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA10851\ subGroups view=C_CG id=CB_div_GS10851 type=SNP\ track pgNA10851\ wgEncodeDukeAffyExonColo829SimpleSignalRep1 Colo829 1 bigBed 6 + Colo829 Exon array Signal Rep 1 from ENCODE/Duke 0 53 0 0 0 127 127 127 1 0 0 expression 1 longLabel Colo829 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Colo829 1\ subGroups cellType=t3COLO829 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonColo829SimpleSignalRep1\ type bigBed 6 +\ wgEncodeOpenChromFaireGlioblaSig Gliobla FAIRE DS bigWig 0.000000 0.367200 Gliobla FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 53 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Gliobla FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel Gliobla FAIRE DS\ subGroups view=SIG cellType=t3GLIOBLA treatment=AANONE\ track wgEncodeOpenChromFaireGlioblaSig\ type bigWig 0.000000 0.367200\ wgEncodeAwgTfbsSydhGm12878Pol2IggmusUniPk GM12878 POLR2A s narrowPeak GM12878 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis 1 53 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 POLR2A s\ subGroups tier=a10 cellType=a10GM12878 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Pol2IggmusUniPk\ wgEncodeHaibMethylRrbsGm12891HaibSitesRep1 GM12891 1 bed 9 + GM12891 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 53 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel GM12891 1\ subGroups cellType=t3GM12891 obtainedBy=HAIB treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsGm12891HaibSitesRep1\ type bed 9 +\ wgEncodeHaibTfbsGm12878Foxm1sc502V0422111PkRep2 GM78 FOXM1 V11 2 broadPeak GM12878 FOXM1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 53 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 FOXM1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 FOXM1 V11 2\ subGroups view=Peaks factor=FOXM1SC502 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Foxm1sc502V0422111PkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqGm12878NucleusPapMinusRawSigRep1 GM78 nuc pA+ - 1 bigWig 1.000000 170294.000000 GM12878 nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 53 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel GM78 nuc pA+ - 1\ subGroups view=MinusSignal cellType=t1GM12878 localization=NUCLEUS rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878NucleusPapMinusRawSigRep1\ type bigWig 1.000000 170294.000000\ wgEncodeSydhTfbsGm12878P300IggmusPk GM78 p300 IgM narrowPeak GM12878 p300 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 53 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 p300 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 p300 IgM\ subGroups view=Peaks factor=P300 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878P300IggmusPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescH3k36me3StdSig H1-hESC H3K36m3 bigWig 0.040000 16712.320312 H1-hESC H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 53 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal\ shortLabel H1-hESC H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k36me3StdSig\ type bigWig 0.040000 16712.320312\ wgEncodeUwAffyExonArrayHahSimpleSignalRep2 HA-h 2 broadPeak HA-h Exon-array Signal Rep 2 from ENCODE/UW 0 53 0 0 0 127 127 127 0 0 0 expression 1 longLabel HA-h Exon-array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HA-h 2\ subGroups cellType=t3HAH rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHahSimpleSignalRep2\ type broadPeak\ wgEncodeUwDgfHahHotspots HA-h Hot broadPeak HA-h DNaseI DGF Hotspots from ENCODE/UW 0 53 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-h DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HA-h Hot\ subGroups view=Hotspots cellType=t3HAAH treatment=aNONE rep=rep1\ track wgEncodeUwDgfHahHotspots\ type broadPeak\ wgEncodeOpenChromChipHepg2Pol2Pk HepG2 Pol2 Pk narrowPeak HepG2 Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 53 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel HepG2 Pol2 Pk\ subGroups treatment=AANONE view=Peaks factor=POL2 cellType=t2HEPG2\ track wgEncodeOpenChromChipHepg2Pol2Pk\ type narrowPeak\ wgEncodeAwgDnaseUwHgfUniPk HGF DNase narrowPeak HGF DNaseI HS Uniform Peaks from ENCODE/Analysis 1 53 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HGF DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HGF DNase\ subGroups tier=a30 cellType=HGF\ track wgEncodeAwgDnaseUwHgfUniPk\ wgEncodeUwRepliSeqImr90S2PctSignalRep1 IMR90 S2 1 bigWig 1.000000 100.000000 IMR90 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 53 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel IMR90 S2 1\ subGroups view=v1PctSignal cellType=t2IMR90 phase=p3S2 rep=rep1\ track wgEncodeUwRepliSeqImr90S2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeHaibRnaSeqJurkatRawRep1 Jurkat 1 bigWig 0.244927 403.884003 Jurkat RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 53 0 0 0 127 127 127 0 0 0 expression 0 longLabel Jurkat RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ origAssembly hg18\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel Jurkat 1\ subGroups view=RawSignal cellType=t3JURKAT treatment=zNONE rep=rep1\ track wgEncodeHaibRnaSeqJurkatRawRep1\ type bigWig 0.244927 403.884003\ wgEncodeCaltechRnaSeqK562R1x75dSplicesRep1V2 K562 1x75D Sp 1 bam K562 single read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 53 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 single read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel K562 1x75D Sp 1\ subGroups view=Splices cellType=t1K562 insertLength=ilNa readType=r1x75D rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqK562R1x75dSplicesRep1V2\ type bam\ wgEncodeRikenCageK562ChromatinTotalTssHmmV3 K562 chrm tot bed 6 K562 chromatin total CAGE TSS HMM from ENCODE/RIKEN 3 53 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 chromatin total CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel K562 chrm tot\ subGroups view=TssHmm cellType=t1K562 localization=chromatin rnaExtract=total rep=rep0 rank=rankP\ track wgEncodeRikenCageK562ChromatinTotalTssHmmV3\ type bed 6\ wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapMinusRawRep3 K562 nlus TAP - 1 bigWig 1.000000 939926.000000 K562 TAP-only nucleolus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 53 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only nucleolus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel K562 nlus TAP - 1\ subGroups view=MinusSignal cellType=t1K562 localization=NUCLEOLUS protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapMinusRawRep3\ type bigWig 1.000000 939926.000000\ wgEncodeUwDnaseLhcnm2HotspotsRep2 LHCNM2 Ht 2 broadPeak LHCN-M2 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 53 0 0 0 127 127 127 0 0 0 regulation 1 longLabel LHCN-M2 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel LHCNM2 Ht 2\ subGroups view=Hot cellType=t2LHCNM2 treatment=None rep=rep2\ track wgEncodeUwDnaseLhcnm2HotspotsRep2\ type broadPeak\ wgEncodeOpenChromDnaseMcf7HypoxlacconSig MCF7 HypxCtrl DS bigWig 0.000000 0.726900 MCF-7 Hypoxia LacAcid Control DNaseI HS Density Signal from ENCODE/Duke 2 53 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 Hypoxia LacAcid Control DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel MCF7 HypxCtrl DS\ subGroups view=SIG cellType=t2MCF7 treatment=HYPOXLACCON\ track wgEncodeOpenChromDnaseMcf7HypoxlacconSig\ type bigWig 0.000000 0.726900\ wgEncodeHaibMethyl450Panc1SitesRep1 PANC-1 bed 9 PANC-1 Methylation 450K Bead Array from ENCODE/HAIB 1 53 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel PANC-1\ subGroups cellType=t3PANC1 obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450Panc1SitesRep1\ type bed 9\ wgEncodeSydhHistoneU2osH3k9me3UcdPk U2OS H3K9me3 narrowPeak U2OS H3K9me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 53 0 0 0 127 127 127 0 0 0 regulation 1 longLabel U2OS H3K9me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks on\ shortLabel U2OS H3K9me3\ subGroups view=Peaks factor=H3K09ME3 cellType=cU2OS control=UCD treatment=NONE\ track wgEncodeSydhHistoneU2osH3k9me3UcdPk\ type narrowPeak\ wgEncodeUwHistoneCd20ro01794H3k04me3StdPkRep3 20+94 H3K4M3 Pk 3 narrowPeak CD20+ (RO 01794) H3K4me3 Histone Mod ChIP-seq Peaks 3 from ENCODE/UW 3 54 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CD20+ (RO 01794) H3K4me3 Histone Mod ChIP-seq Peaks 3 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel 20+94 H3K4M3 Pk 3\ subGroups view=Peaks factor=H3K04ME3 cellType=t2BCELLSCD20RO01794 treatment=zNone rep=rep3\ track wgEncodeUwHistoneCd20ro01794H3k04me3StdPkRep3\ type narrowPeak\ wgEncodeGisRnaPetA549NucleusPapPlusRawRep3 A549 nucl pA+ + 3 bigWig 1.000000 1534180.000000 A549 nucleus polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS 2 54 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 nucleus polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel A549 nucl pA+ + 3\ subGroups view=v2PlusRawSignal cellType=bA549 cloned=Free localization=nucleus rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetA549NucleusPapPlusRawRep3\ type bigWig 1.000000 1534180.000000\ encTfChipPkENCFF639NGJ A549 ZBTB33 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in A549 from ENCODE 3 (ENCFF639NGJ) 1 54 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in A549 from ENCODE 3 (ENCFF639NGJ)\ parent encTfChipPk off\ shortLabel A549 ZBTB33\ subGroups cellType=A549 factor=ZBTB33\ track encTfChipPkENCFF639NGJ\ wgEncodeUwTfbsAg04449CtcfStdPkRep1 AG49 CTCF Pk 1 narrowPeak AG04449 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 54 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04449 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel AG49 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3AG04449 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg04449CtcfStdPkRep1\ type narrowPeak\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_ctss_rev AorticSmsToIL1b_00hr00minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_reverse 0 54 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep2%20%28LK32%29.CNhs13369.12750-136A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12750-136A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_tpm_rev AorticSmsToIL1b_00hr00minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_reverse 1 54 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep2%20%28LK32%29.CNhs13369.12750-136A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12750-136A5 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToIL1b_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5\ urlLabel FANTOM5 Details:\ pgNA10851indel CEU NA10851 indel pgSnp CEU NA10851 indel (Complete Genomics) 0 54 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA10851 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA10851 indel\ subGroups view=C_CG id=CB_div_GS10851 type=Indel\ track pgNA10851indel\ wgEncodeDukeAffyExonColo829SimpleSignalRep2 Colo829 2 bigBed 6 + Colo829 Exon array Signal Rep 2 from ENCODE/Duke 0 54 0 0 0 127 127 127 1 0 0 expression 1 longLabel Colo829 Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Colo829 2\ subGroups cellType=t3COLO829 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonColo829SimpleSignalRep2\ type bigBed 6 +\ wgEncodeOpenChromFaireGlioblaBaseOverlapSignal Gliobla FAIRE OS bigWig 0.000000 2386.000000 Gliobla FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 54 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Gliobla FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel Gliobla FAIRE OS\ subGroups view=SIGBO cellType=t3GLIOBLA treatment=AANONE\ track wgEncodeOpenChromFaireGlioblaBaseOverlapSignal\ type bigWig 0.000000 2386.000000\ wgEncodeAwgTfbsSydhGm12878Pol2s2IggmusUniPk GM12878 POLR2A s2 narrowPeak GM12878 TFBS Uniform Peaks of Pol2(phosphoS2) from ENCODE/Stanford/Analysis 1 54 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of Pol2(phosphoS2) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 POLR2A s2\ subGroups tier=a10 cellType=a10GM12878 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Pol2s2IggmusUniPk\ wgEncodeHaibMethylRrbsGm12891HaibSitesRep2 GM12891 2 bed 9 + GM12891 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 54 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel GM12891 2\ subGroups cellType=t3GM12891 obtainedBy=HAIB treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsGm12891HaibSitesRep2\ type bed 9 +\ wgEncodeHaibTfbsGm12878Foxm1sc502V0422111RawRep2 GM78 FOXM1 V11 2 bigWig 0.187763 364.682007 GM12878 FOXM1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 54 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 FOXM1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 FOXM1 V11 2\ subGroups view=RawSignal factor=FOXM1SC502 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Foxm1sc502V0422111RawRep2\ type bigWig 0.187763 364.682007\ wgEncodeCshlLongRnaSeqGm12878NucleusPapMinusRawSigRep2 GM78 nuc pA+ - 2 bigWig 1.000000 167621.000000 GM12878 nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 54 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel GM78 nuc pA+ - 2\ subGroups view=MinusSignal cellType=t1GM12878 localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878NucleusPapMinusRawSigRep2\ type bigWig 1.000000 167621.000000\ wgEncodeSydhTfbsGm12878P300IggmusSig GM78 p300 IgM bigWig 1.000000 16272.000000 GM12878 p300 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 54 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 p300 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 p300 IgM\ subGroups view=Signal factor=P300 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878P300IggmusSig\ type bigWig 1.000000 16272.000000\ wgEncodeBroadHistoneH1hescH3k79me2StdPk H1-hESC H3K79m2 broadPeak H1-hESC H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 54 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k79me2StdPk\ type broadPeak\ wgEncodeUwDgfHahPk HA-h Pk narrowPeak HA-h DNaseI DGF Peaks from ENCODE/UW 0 54 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-h DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HA-h Pk\ subGroups view=Peaks cellType=t3HAAH treatment=aNONE rep=rep1\ track wgEncodeUwDgfHahPk\ type narrowPeak\ wgEncodeUwAffyExonArrayHaspSimpleSignalRep1 HA-sp 1 broadPeak HA-sp Exon array Signal Rep 1 from ENCODE/UW 0 54 0 0 0 127 127 127 0 0 0 expression 1 longLabel HA-sp Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HA-sp 1\ subGroups cellType=t3HASP rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHaspSimpleSignalRep1\ type broadPeak\ wgEncodeOpenChromChipHepg2Pol2Sig HepG2 Pol2 DS bigWig 0.000000 6.043500 HepG2 Pol2 TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 54 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Pol2 TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel HepG2 Pol2 DS\ subGroups treatment=AANONE view=SIG factor=POL2 cellType=t2HEPG2\ track wgEncodeOpenChromChipHepg2Pol2Sig\ type bigWig 0.000000 6.043500\ wgEncodeAwgDnaseUwHipepicUniPk HIPEpiC DNase narrowPeak HIPEpiC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 54 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HIPEpiC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HIPEpiC DNase\ subGroups tier=a30 cellType=HIPEpiC\ track wgEncodeAwgDnaseUwHipepicUniPk\ wgEncodeUwRepliSeqImr90S3PctSignalRep1 IMR90 S3 1 bigWig 1.000000 100.000000 IMR90 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 54 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel IMR90 S3 1\ subGroups view=v1PctSignal cellType=t2IMR90 phase=p4S3 rep=rep1\ track wgEncodeUwRepliSeqImr90S3PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeHaibRnaSeqJurkatAlnRep1V2 Jurkat 1 bam Jurkat RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 54 0 0 0 127 127 127 0 0 0 expression 1 longLabel Jurkat RNA-seq Alignments Rep 1 from ENCODE/HAIB\ origAssembly hg18\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel Jurkat 1\ subGroups view=Alignments cellType=t3JURKAT treatment=zNONE rep=rep1\ track wgEncodeHaibRnaSeqJurkatAlnRep1V2\ type bam\ wgEncodeHaibGenotypeJurkatRegionsRep1 Jurkat 1 bed 9 + Jurkat Copy number variants Replicate 1 from ENCODE/HAIB 0 54 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Jurkat Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel Jurkat 1\ subGroups cellType=t3JURKAT obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeJurkatRegionsRep1\ type bed 9 +\ wgEncodeCaltechRnaSeqK562R1x75dSplicesRep2V2 K562 1x75D Sp 2 bam K562 single read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 54 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 single read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel K562 1x75D Sp 2\ subGroups view=Splices cellType=t1K562 insertLength=ilNa readType=r1x75D rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqK562R1x75dSplicesRep2V2\ type bam\ wgEncodeRikenCageK562ChromatinTotalPlusSignal K562 chrm tot + 1 bigWig 0.040000 4464.319824 K562 chromatin total CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 54 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 chromatin total CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel K562 chrm tot + 1\ subGroups view=PlusRawSignal cellType=t1K562 localization=chromatin rnaExtract=total rep=rep0 rank=rank1\ track wgEncodeRikenCageK562ChromatinTotalPlusSignal\ type bigWig 0.040000 4464.319824\ wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapMinusRawRep4 K562 nlus TAP - 2 bigWig 1.000000 941876.000000 K562 TAP-only nucleolus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 54 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only nucleolus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel K562 nlus TAP - 2\ subGroups view=MinusSignal cellType=t1K562 localization=NUCLEOLUS protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapMinusRawRep4\ type bigWig 1.000000 941876.000000\ wgEncodeUwDnaseLhcnm2Diff4dPkRep2 LHCNM2 dif4d Pk 2 narrowPeak LHCN-M2 DIFF 4 d DNaseI HS Peaks Rep 2 from ENCODE/UW 1 54 0 0 0 127 127 127 0 0 0 regulation 1 longLabel LHCN-M2 DIFF 4 d DNaseI HS Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel LHCNM2 dif4d Pk 2\ subGroups view=Peaks cellType=t2LHCNM2 treatment=DIFF4D rep=rep2\ track wgEncodeUwDnaseLhcnm2Diff4dPkRep2\ type narrowPeak\ wgEncodeOpenChromDnaseMcf7HypoxlacconBaseOverlapSignal MCF7 HypxCtrl OS bigWig 0.000000 220.000000 MCF-7 Hypoxia LacAcid Control DNaseI HS Overlap Signal from ENCODE/Duke 2 54 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 Hypoxia LacAcid Control DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel MCF7 HypxCtrl OS\ subGroups view=SIGBO cellType=t2MCF7 treatment=HYPOXLACCON\ track wgEncodeOpenChromDnaseMcf7HypoxlacconBaseOverlapSignal\ type bigWig 0.000000 220.000000\ wgEncodeHaibMethyl450Pfsk1SitesRep1 PFSK-1 bed 9 PFSK-1 Methylation 450K Bead Array from ENCODE/HAIB 1 54 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PFSK-1 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel PFSK-1\ subGroups cellType=t3PFSK1 obtainedBy=HAIB treatment=zNONE\ track wgEncodeHaibMethyl450Pfsk1SitesRep1\ type bed 9\ wgEncodeSydhHistoneU2osH3k9me3UcdSig U2OS H3K9me3 bigWig 1.000000 51513.000000 U2OS H3K9me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 54 0 0 0 127 127 127 0 0 0 regulation 0 longLabel U2OS H3K9me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal on\ shortLabel U2OS H3K9me3\ subGroups view=Signal factor=H3K09ME3 cellType=cU2OS control=UCD treatment=NONE\ track wgEncodeSydhHistoneU2osH3k9me3UcdSig\ type bigWig 1.000000 51513.000000\ wgEncodeUwHistoneCd20ro01794H3k04me3StdRawRep3 20+94 H3K4M3 Sg 3 bigWig 1.000000 4845.000000 CD20+ (RO 01794) H3K4me3 Histone Mod ChIP-seq Raw Sig 3 from ENCODE/UW 2 55 0 0 0 127 127 127 0 0 0 regulation 0 longLabel CD20+ (RO 01794) H3K4me3 Histone Mod ChIP-seq Raw Sig 3 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel 20+94 H3K4M3 Sg 3\ subGroups view=zRSig factor=H3K04ME3 cellType=t2BCELLSCD20RO01794 treatment=zNone rep=rep3\ track wgEncodeUwHistoneCd20ro01794H3k04me3StdRawRep3\ type bigWig 1.000000 4845.000000\ wgEncodeGisRnaPetA549NucleusPapPlusRawRep4 A549 nucl pA+ + 4 bigWig 1.000000 2703790.000000 A549 nucleus polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS 2 55 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 nucleus polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel A549 nucl pA+ + 4\ subGroups view=v2PlusRawSignal cellType=bA549 cloned=Free localization=nucleus rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetA549NucleusPapPlusRawRep4\ type bigWig 1.000000 2703790.000000\ encTfChipPkENCFF947IJX A673 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in A673 from ENCODE 3 (ENCFF947IJX) 1 55 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in A673 from ENCODE 3 (ENCFF947IJX)\ parent encTfChipPk off\ shortLabel A673 CTCF\ subGroups cellType=A673 factor=CTCF\ track encTfChipPkENCFF947IJX\ wgEncodeUwTfbsAg04449CtcfStdRawRep1 AG49 CTCF Sg 1 bigWig 1.000000 2542.000000 AG04449 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 55 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04449 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AG49 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3AG04449 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg04449CtcfStdRawRep1\ type bigWig 1.000000 2542.000000\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_ctss_fwd AorticSmsToIL1b_00hr00minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_forward 0 55 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep3%20%28LK33%29.CNhs13577.12848-137C4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12848-137C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_tpm_fwd AorticSmsToIL1b_00hr00minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_forward 1 55 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep3%20%28LK33%29.CNhs13577.12848-137C4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12848-137C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4\ urlLabel FANTOM5 Details:\ pgNA12004 CEU NA12004 pgSnp CEU NA12004 (Complete Genomics) 0 55 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12004 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12004\ subGroups view=C_CG id=CB_div_GS12004 type=SNP\ track pgNA12004\ wgEncodeDukeAffyExonFibroblSimpleSignalRep1V2 Fibrobl 1 bigBed 6 + Fibrobl Exon array Signal Rep 1 from ENCODE/Duke 0 55 0 0 0 127 127 127 1 0 0 expression 1 longLabel Fibrobl Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Fibrobl 1\ subGroups cellType=t3FIBROBL treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonFibroblSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeAwgTfbsUtaGm12878Pol2UniPk GM12878 POLR2A t narrowPeak GM12878 TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis 1 55 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 POLR2A t\ subGroups tier=a10 cellType=a10GM12878 factor=POLR2A lab=UT-A\ track wgEncodeAwgTfbsUtaGm12878Pol2UniPk\ wgEncodeOpenChromFaireGm12891Pk GM12891 FAIRE Pk narrowPeak GM12891 FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 55 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM12891 FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel GM12891 FAIRE Pk\ subGroups view=Peaks cellType=t3GM12891 treatment=AANONE\ track wgEncodeOpenChromFaireGm12891Pk\ type narrowPeak\ wgEncodeHaibMethylRrbsGm12892HaibSitesRep1 GM12892 1 bed 9 + GM12892 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 55 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel GM12892 1\ subGroups cellType=t3GM12892 obtainedBy=HAIB treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsGm12892HaibSitesRep1\ type bed 9 +\ wgEncodeHaibTfbsGm12878GabpPcr2xPkRep1 GM78 GABP PCR2 1 broadPeak GM12878 GABP PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 55 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 GABP PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel GM78 GABP PCR2 1\ subGroups view=Peaks factor=GABP cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878GabpPcr2xPkRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqGm12878NucleusPapPlusRawSigRep1 GM78 nuc pA+ + 1 bigWig 1.000000 386413.000000 GM12878 nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 55 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel GM78 nuc pA+ + 1\ subGroups view=PlusSignal cellType=t1GM12878 localization=NUCLEUS rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqGm12878NucleusPapPlusRawSigRep1\ type bigWig 1.000000 386413.000000\ wgEncodeSydhTfbsGm12878P300sc584IggmusPk GM78 p300 IgM narrowPeak GM12878 p300 SC584 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 55 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 p300 SC584 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 p300 IgM\ subGroups view=Peaks factor=P300SC584 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878P300sc584IggmusPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescH3k79me2StdSig H1-hESC H3K79m2 bigWig 0.040000 18712.800781 H1-hESC H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 55 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH3k79me2StdSig\ type bigWig 0.040000 18712.800781\ wgEncodeUwDgfHahSig HA-h Sig bigWig 1.000000 63740.000000 HA-h DNaseI DGF Per-base Signal from ENCODE/UW 2 55 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HA-h DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HA-h Sig\ subGroups view=Signal cellType=t3HAAH treatment=aNONE rep=rep1\ track wgEncodeUwDgfHahSig\ type bigWig 1.000000 63740.000000\ wgEncodeUwAffyExonArrayHaspSimpleSignalRep2 HA-sp 2 broadPeak HA-sp Exon array Signal Rep 2 from ENCODE/UW 0 55 0 0 0 127 127 127 0 0 0 expression 1 longLabel HA-sp Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HA-sp 2\ subGroups cellType=t3HASP rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHaspSimpleSignalRep2\ type broadPeak\ wgEncodeCaltechRnaSeqHelas3R2x75Il200AlignsRep1V2 HeLa 2x75 A 1 bam HeLa-S3 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 55 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel HeLa 2x75 A 1\ subGroups view=Aligns cellType=t2HELAS3 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHelas3R2x75Il200AlignsRep1V2\ type bam\ wgEncodeOpenChromChipHepg2Pol2BaseOverlapSignal HepG2 Pol2 OS bigWig 0.000000 2206.000000 HepG2 Pol2 TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 55 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Pol2 TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel HepG2 Pol2 OS\ subGroups treatment=AANONE view=SIGBO factor=POL2 cellType=t2HEPG2\ track wgEncodeOpenChromChipHepg2Pol2BaseOverlapSignal\ type bigWig 0.000000 2206.000000\ wgEncodeAwgDnaseUwHl60UniPk HL-60 DNase narrowPeak HL-60 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 55 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HL-60 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HL-60 DNase\ subGroups tier=a30 cellType=HL-60\ track wgEncodeAwgDnaseUwHl60UniPk\ wgEncodeUwRepliSeqImr90S4PctSignalRep1 IMR90 S4 1 bigWig 1.000000 100.000000 IMR90 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 55 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel IMR90 S4 1\ subGroups view=v1PctSignal cellType=t2IMR90 phase=p5S4 rep=rep1\ track wgEncodeUwRepliSeqImr90S4PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeHaibRnaSeqJurkatRawRep2 Jurkat 2 bigWig 0.579586 391.365997 Jurkat RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 55 0 0 0 127 127 127 0 0 0 expression 0 longLabel Jurkat RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel Jurkat 2\ subGroups view=RawSignal cellType=t3JURKAT treatment=zNONE rep=rep2\ track wgEncodeHaibRnaSeqJurkatRawRep2\ type bigWig 0.579586 391.365997\ wgEncodeHaibGenotypeJurkatRegionsRep2 Jurkat 2 bed 9 + Jurkat Copy number variants Replicate 2 from ENCODE/HAIB 0 55 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Jurkat Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel Jurkat 2\ subGroups cellType=t3JURKAT obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeJurkatRegionsRep2\ type bed 9 +\ wgEncodeRikenCageK562ChromatinTotalMinusSignal K562 chrm tot - 1 bigWig 0.040000 4464.319824 K562 chromatin total CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 55 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 chromatin total CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel K562 chrm tot - 1\ subGroups view=MinusRawSignal cellType=t1K562 localization=chromatin rnaExtract=total rep=rep0 rank=rank1\ track wgEncodeRikenCageK562ChromatinTotalMinusSignal\ type bigWig 0.040000 4464.319824\ wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapPlusRawRep3 K562 nlus TAP + 1 bigWig 1.000000 1901395.000000 K562 TAP-only nucleolus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 55 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only nucleolus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel K562 nlus TAP + 1\ subGroups view=PlusSignal cellType=t1K562 localization=NUCLEOLUS protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapPlusRawRep3\ type bigWig 1.000000 1901395.000000\ wgEncodeUwDnaseLhcnm2PkRep2 LHCNM2 Pk 2 narrowPeak LHCN-M2 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 55 0 0 0 127 127 127 0 0 0 regulation 1 longLabel LHCN-M2 DNaseI HS Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel LHCNM2 Pk 2\ subGroups view=Peaks cellType=t2LHCNM2 treatment=None rep=rep2\ track wgEncodeUwDnaseLhcnm2PkRep2\ type narrowPeak\ wgEncodeOpenChromDnaseMcf7RandshrnaPk MCF7 shRNACtrl Pk narrowPeak MCF-7 Randomized shRNA Control DNaseI HS Peaks from ENCODE/Duke 3 55 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 Randomized shRNA Control DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel MCF7 shRNACtrl Pk\ subGroups view=Peaks cellType=t2MCF7 treatment=RANDSHRNA\ track wgEncodeOpenChromDnaseMcf7RandshrnaPk\ type narrowPeak\ wgEncodeHaibMethyl450PrecSitesRep1 PrEC bed 9 PrEC Methylation 450K Bead Array from ENCODE/HAIB 1 55 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PrEC Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel PrEC\ subGroups cellType=t3PREC obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450PrecSitesRep1\ type bed 9\ wgEncodeSydhHistoneU2osH3k36me3bUcdPk U2OS H3K36me3 narrowPeak U2OS H3K36me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH 3 55 0 0 0 127 127 127 0 0 0 regulation 1 longLabel U2OS H3K36me3 Histone Modifications by ChIP-Seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewPeaks on\ shortLabel U2OS H3K36me3\ subGroups view=Peaks factor=H3K36me3B cellType=cU2OS control=UCD treatment=NONE\ track wgEncodeSydhHistoneU2osH3k36me3bUcdPk\ type narrowPeak\ wgEncodeUwHistoneCd20ro01794InputStdRawRep1 20+94 In Sg 1 bigWig 1.000000 15322.000000 CD20+ (RO 01794) Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 56 0 0 0 127 127 127 0 0 0 regulation 0 longLabel CD20+ (RO 01794) Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel 20+94 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t2BCELLSCD20RO01794 treatment=zNone rep=rep1\ track wgEncodeUwHistoneCd20ro01794InputStdRawRep1\ type bigWig 1.000000 15322.000000\ wgEncodeGisRnaPetA549NucleusPapAlnRep3 A549 nucl pA+ A 3 bam A549 nucleus polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS 0 56 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 nucleus polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel A549 nucl pA+ A 3\ subGroups view=v3Alignments cellType=bA549 cloned=Free localization=nucleus rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetA549NucleusPapAlnRep3\ type bam\ encTfChipPkENCFF085BBF A673 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in A673 from ENCODE 3 (ENCFF085BBF) 1 56 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in A673 from ENCODE 3 (ENCFF085BBF)\ parent encTfChipPk off\ shortLabel A673 EZH2\ subGroups cellType=A673 factor=EZH2\ track encTfChipPkENCFF085BBF\ wgEncodeUwTfbsAg04449CtcfStdHotspotsRep2 AG49 CTCF Ht 2 broadPeak AG04449 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 56 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04449 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel AG49 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3AG04449 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAg04449CtcfStdHotspotsRep2\ type broadPeak\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_ctss_rev AorticSmsToIL1b_00hr00minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_reverse 0 56 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep3%20%28LK33%29.CNhs13577.12848-137C4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12848-137C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_tpm_rev AorticSmsToIL1b_00hr00minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_reverse 1 56 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep3%20%28LK33%29.CNhs13577.12848-137C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12848-137C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4\ urlLabel FANTOM5 Details:\ pgNA12004indel CEU NA12004 indel pgSnp CEU NA12004 indel (Complete Genomics) 0 56 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12004 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12004 indel\ subGroups view=C_CG id=CB_div_GS12004 type=Indel\ track pgNA12004indel\ wgEncodeDukeAffyExonFibroblSimpleSignalRep2V2 Fibrobl 2 bigBed 6 + Fibrobl Exon array Signal Rep 2 from ENCODE/Duke 0 56 0 0 0 127 127 127 1 0 0 expression 1 longLabel Fibrobl Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Fibrobl 2\ subGroups cellType=t3FIBROBL treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonFibroblSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeAwgTfbsSydhGm12878Pol2UniPk GM12878 POLR2A y narrowPeak GM12878 TFBS Uniform Peaks of Pol2 from ENCODE/Yale/Analysis 1 56 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of Pol2 from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 POLR2A y\ subGroups tier=a10 cellType=a10GM12878 factor=POLR2A lab=Yale\ track wgEncodeAwgTfbsSydhGm12878Pol2UniPk\ wgEncodeOpenChromFaireGm12891Sig GM12891 FAIRE DS bigWig 0.000000 0.636800 GM12891 FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 56 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM12891 FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel GM12891 FAIRE DS\ subGroups view=SIG cellType=t3GM12891 treatment=AANONE\ track wgEncodeOpenChromFaireGm12891Sig\ type bigWig 0.000000 0.636800\ wgEncodeHaibMethylRrbsGm12892HaibSitesRep2 GM12892 2 bed 9 + GM12892 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 56 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel GM12892 2\ subGroups cellType=t3GM12892 obtainedBy=HAIB treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsGm12892HaibSitesRep2\ type bed 9 +\ wgEncodeHaibTfbsGm12878GabpPcr2xRawRep1 GM78 GABP PCR2 1 bigWig 0.155918 172.757004 GM12878 GABP PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 56 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 GABP PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel GM78 GABP PCR2 1\ subGroups view=RawSignal factor=GABP cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878GabpPcr2xRawRep1\ type bigWig 0.155918 172.757004\ wgEncodeCshlLongRnaSeqGm12878NucleusPapPlusRawSigRep2 GM78 nuc pA+ + 2 bigWig 1.000000 149923.000000 GM12878 nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 56 153 38 0 204 146 127 0 0 0 expression 0 color 153,38,0\ longLabel GM12878 nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel GM78 nuc pA+ + 2\ subGroups view=PlusSignal cellType=t1GM12878 localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqGm12878NucleusPapPlusRawSigRep2\ type bigWig 1.000000 149923.000000\ wgEncodeSydhTfbsGm12878P300sc584IggmusSig GM78 p300 IgM bigWig 1.000000 20108.000000 GM12878 p300 SC584 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 56 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 p300 SC584 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 p300 IgM\ subGroups view=Signal factor=P300SC584 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878P300sc584IggmusSig\ type bigWig 1.000000 20108.000000\ wgEncodeBroadHistoneH1hescH4k20me1StdPk H1-hESC H4K20m1 broadPeak H1-hESC H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 56 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH4k20me1StdPk\ type broadPeak\ wgEncodeUwDgfHahRaw HA-h Raw bigWig 1.000000 318524.000000 HA-h DNaseI DGF Raw Signal from ENCODE/UW 0 56 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HA-h DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HA-h Raw\ subGroups view=zRaw cellType=t3HAAH treatment=aNONE rep=rep1\ track wgEncodeUwDgfHahRaw\ type bigWig 1.000000 318524.000000\ wgEncodeUwAffyExonArrayHbmecSimpleSignalRep1 HBMEC 1 broadPeak HBMEC Exon array Signal Rep 1 from ENCODE/UW 0 56 0 0 0 127 127 127 0 0 0 expression 1 longLabel HBMEC Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HBMEC 1\ subGroups cellType=t3HBMEC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHbmecSimpleSignalRep1\ type broadPeak\ wgEncodeCaltechRnaSeqHelas3R2x75Il200AlignsRep2V2 HeLa 2x75 A 2 bam HeLa-S3 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 56 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel HeLa 2x75 A 2\ subGroups view=Aligns cellType=t2HELAS3 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHelas3R2x75Il200AlignsRep2V2\ type bam\ wgEncodeOpenChromChipHepg2InputSig HepG2 Input DS bigWig 0.000000 5.315900 HepG2 Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 56 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel HepG2 Input DS\ subGroups treatment=AANONE view=SIG factor=zCTRL cellType=t2HEPG2\ track wgEncodeOpenChromChipHepg2InputSig\ type bigWig 0.000000 5.315900\ wgEncodeAwgDnaseUwdukeHmecUniPk HMEC DNase narrowPeak HMEC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 56 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMEC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HMEC DNase\ subGroups tier=a30 cellType=HMEC\ track wgEncodeAwgDnaseUwdukeHmecUniPk\ wgEncodeUwRepliSeqImr90G2PctSignalRep1 IMR90 G2 1 bigWig 1.000000 100.000000 IMR90 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 56 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel IMR90 G2 1\ subGroups view=v1PctSignal cellType=t2IMR90 phase=p6G2 rep=rep1\ track wgEncodeUwRepliSeqImr90G2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeHaibRnaSeqJurkatAlnRep2 Jurkat 2 bam Jurkat RNA-seq Alignments Replicate 2 from ENCODE/HAIB 0 56 0 0 0 127 127 127 0 0 0 expression 1 longLabel Jurkat RNA-seq Alignments Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel Jurkat 2\ subGroups view=Alignments cellType=t3JURKAT treatment=zNONE rep=rep2\ track wgEncodeHaibRnaSeqJurkatAlnRep2\ type bam\ wgEncodeRikenCageK562ChromatinTotalAln K562 chrm tot A 1 bam K562 chromatin total CAGE Alignments Rep 1 from ENCODE/RIKEN 0 56 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 chromatin total CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel K562 chrm tot A 1\ subGroups view=Alignments cellType=t1K562 localization=chromatin rnaExtract=total rep=rep0 rank=rank1\ track wgEncodeRikenCageK562ChromatinTotalAln\ type bam\ wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapPlusRawRep4 K562 nlus TAP + 2 bigWig 1.000000 1283816.000000 K562 TAP-only nucleolus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 56 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only nucleolus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel K562 nlus TAP + 2\ subGroups view=PlusSignal cellType=t1K562 localization=NUCLEOLUS protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapPlusRawRep4\ type bigWig 1.000000 1283816.000000\ wgEncodeUwDnaseLhcnm2Diff4dRawRep2 LHCNM2 dif4d Sg 2 bigWig 1.000000 91784.000000 LHCN-M2 DIFF 4 d DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 56 0 0 0 127 127 127 0 0 0 regulation 0 longLabel LHCN-M2 DIFF 4 d DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel LHCNM2 dif4d Sg 2\ subGroups view=zRSig cellType=t2LHCNM2 treatment=DIFF4D rep=rep2\ track wgEncodeUwDnaseLhcnm2Diff4dRawRep2\ type bigWig 1.000000 91784.000000\ wgEncodeHaibGenotypeLncapRegionsRep1 LNCaP 1 bed 9 + LNCaP Copy number variants Replicate 1 from ENCODE/HAIB 0 56 0 0 0 127 127 127 0 0 0 varRep 1 longLabel LNCaP Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel LNCaP 1\ subGroups cellType=t3LNCAP obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeLncapRegionsRep1\ type bed 9 +\ wgEncodeOpenChromDnaseMcf7RandshrnaSig MCF7 shRNACtrl DS bigWig 0.000000 1.001000 MCF-7 Randomized shRNA Control DNaseI HS Density Signal from ENCODE/Duke 2 56 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 Randomized shRNA Control DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel MCF7 shRNACtrl DS\ subGroups view=SIG cellType=t2MCF7 treatment=RANDSHRNA\ track wgEncodeOpenChromDnaseMcf7RandshrnaSig\ type bigWig 0.000000 1.001000\ wgEncodeHaibMethyl450ProgfibSitesRep1 ProgFib bed 9 ProgFib Methylation 450K Bead Array from ENCODE/HAIB 1 56 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ProgFib Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel ProgFib\ subGroups cellType=t3PROGFIB obtainedBy=DUKE treatment=zNONE\ track wgEncodeHaibMethyl450ProgfibSitesRep1\ type bed 9\ wgEncodeSydhHistoneU2osH3k36me3bUcdSig U2OS H3K36me3 bigWig 1.000000 12731.000000 U2OS H3K36me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 56 0 0 0 127 127 127 0 0 0 regulation 0 longLabel U2OS H3K36me3 Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ parent wgEncodeSydhHistoneViewSignal on\ shortLabel U2OS H3K36me3\ subGroups view=Signal factor=H3K36me3B cellType=cU2OS control=UCD treatment=NONE\ track wgEncodeSydhHistoneU2osH3k36me3bUcdSig\ type bigWig 1.000000 12731.000000\ wgEncodeGisRnaPetA549NucleusPapAlnRep4 A549 nucl pA+ A 4 bam A549 nucleus polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS 0 57 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 nucleus polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel A549 nucl pA+ A 4\ subGroups view=v3Alignments cellType=bA549 cloned=Free localization=nucleus rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetA549NucleusPapAlnRep4\ type bam\ encTfChipPkENCFF970AVM AG04449 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in AG04449 from ENCODE 3 (ENCFF970AVM) 1 57 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in AG04449 from ENCODE 3 (ENCFF970AVM)\ parent encTfChipPk off\ shortLabel AG04449 CTCF\ subGroups cellType=AG04449 factor=CTCF\ track encTfChipPkENCFF970AVM\ wgEncodeUwTfbsAg04449CtcfStdPkRep2 AG49 CTCF Pk 2 narrowPeak AG04449 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 57 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04449 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel AG49 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3AG04449 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAg04449CtcfStdPkRep2\ type narrowPeak\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_ctss_fwd AorticSmsToIL1b_00hr15minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_forward 0 57 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep1%20%28LK34%29.CNhs13350.12653-134H7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12653-134H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_tpm_fwd AorticSmsToIL1b_00hr15minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_forward 1 57 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep1%20%28LK34%29.CNhs13350.12653-134H7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12653-134H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7\ urlLabel FANTOM5 Details:\ wgEncodeDukeAffyExonFibropag08395SimpleSignalRep1 FibroP_AG08395 1 bigBed 6 + FibroP (AG08395) Exon array Signal Rep 1 from ENCODE/Duke 0 57 0 0 0 127 127 127 1 0 0 expression 1 longLabel FibroP (AG08395) Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel FibroP_AG08395 1\ subGroups cellType=t3FIBROPAG08395 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonFibropag08395SimpleSignalRep1\ type bigBed 6 +\ wgEncodeAwgTfbsSydhGm12878Pol3UniPk GM12878 POLR3G narrowPeak GM12878 TFBS Uniform Peaks of Pol3 from ENCODE/Yale/Analysis 1 57 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of Pol3 from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 POLR3G\ subGroups tier=a10 cellType=a10GM12878 factor=POLR3G lab=Yale\ track wgEncodeAwgTfbsSydhGm12878Pol3UniPk\ wgEncodeOpenChromFaireGm12891BaseOverlapSignal GM12891 FAIRE OS bigWig 0.000000 1602.000000 GM12891 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 57 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM12891 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel GM12891 FAIRE OS\ subGroups view=SIGBO cellType=t3GM12891 treatment=AANONE\ track wgEncodeOpenChromFaireGm12891BaseOverlapSignal\ type bigWig 0.000000 1602.000000\ wgEncodeHaibMethylRrbsGm19239DukeSitesRep1 GM19239 1 bed 9 + GM19239 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 57 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM19239 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel GM19239 1\ subGroups cellType=t3GM19239 obtainedBy=DUKE treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsGm19239DukeSitesRep1\ type bed 9 +\ wgEncodeHaibTfbsGm12878GabpPcr2xPkRep2 GM78 GABP PCR2 2 broadPeak GM12878 GABP PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 57 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 GABP PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel GM78 GABP PCR2 2\ subGroups view=Peaks factor=GABP cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878GabpPcr2xPkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12878P300bStdPk GM78 p300 Std narrowPeak GM12878 p300 SC584 Standard ChIP-seq Peaks from ENCODE/SYDH 3 57 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 p300 SC584 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 p300 Std\ subGroups view=Peaks factor=P300SC584 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878P300bStdPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescH4k20me1StdSig H1-hESC H4K20m1 bigWig 0.040000 23103.880859 H1-hESC H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 57 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescH4k20me1StdSig\ type bigWig 0.040000 23103.880859\ wgEncodeCshlLongRnaSeqH1hescCellLongnonpolyaAlnRep1 H1hSC cel pA- A 1 bam H1-hESC whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 57 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel H1hSC cel pA- A 1\ subGroups view=Alignments cellType=t1H1HESC localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqH1hescCellLongnonpolyaAlnRep1\ type bam\ wgEncodeUwDgfHaspHotspots HA-sp Hot broadPeak HA-sp DNaseI DGF Hotspots from ENCODE/UW 0 57 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-sp DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HA-sp Hot\ subGroups view=Hotspots cellType=t3HAASP treatment=aNONE rep=rep1\ track wgEncodeUwDgfHaspHotspots\ type broadPeak\ wgEncodeUwAffyExonArrayHbmecSimpleSignalRep2 HBMEC 2 broadPeak HBMEC Exon array Signal Rep 2 from ENCODE/UW 0 57 0 0 0 127 127 127 0 0 0 expression 1 longLabel HBMEC Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HBMEC 2\ subGroups cellType=t3HBMEC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHbmecSimpleSignalRep2\ type broadPeak\ wgEncodeCaltechRnaSeqHelas3R2x75Th1014Il200SigRep1V4 HeLa 2x75 Sg 1 bigWig 0.024300 59610.000000 HeLa-S3 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech 2 57 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel HeLa 2x75 Sg 1\ subGroups view=Signal cellType=t2HELAS3 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHelas3R2x75Th1014Il200SigRep1V4\ type bigWig 0.024300 59610.000000\ wgEncodeUwHistoneHelas3H3k4me3StdHotspotsRep1 HeLa H3K4M3 Ht 1 broadPeak HeLa-S3 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 57 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HeLa H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t2HELAS3 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeAwgDnaseUwHmfUniPk HMF DNase narrowPeak HMF DNaseI HS Uniform Peaks from ENCODE/Analysis 1 57 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMF DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HMF DNase\ subGroups tier=a30 cellType=HMF\ track wgEncodeAwgDnaseUwHmfUniPk\ wgEncodeOpenChromChipHuvecCmycPk HUVEC cMyc Pk narrowPeak HUVEC cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 57 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel HUVEC cMyc Pk\ subGroups treatment=AANONE view=Peaks factor=CMYC cellType=t2HUVEC\ track wgEncodeOpenChromChipHuvecCmycPk\ type narrowPeak\ wgEncodeUwRepliSeqImr90PkRep1 IMR90 Pk 1 bed 9 IMR90 Repli-seq Peaks Rep 1 from ENCODE/UW 0 57 0 0 0 127 127 127 1 0 0 regulation 1 longLabel IMR90 Repli-seq Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPeaks off\ shortLabel IMR90 Pk 1\ subGroups view=v2Peaks cellType=t2IMR90 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqImr90PkRep1\ type bed 9\ wgEncodeRikenCageK562CytosolPamTssHmmV2 K562 cyto pA- bed 6 K562 cytosol polyA- CAGE TSS HMM from ENCODE/RIKEN 3 57 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA- CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm on\ shortLabel K562 cyto pA-\ subGroups view=TssHmm cellType=t1K562 localization=cytosol rnaExtract=pAM rep=rep0 rank=rankP\ track wgEncodeRikenCageK562CytosolPamTssHmmV2\ type bed 6\ wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapContigs K562 nplm TAP C bed 6 K562 TAP-only nucleoplasm small RNA-seq Contigs from ENCODE/CSHL 2 57 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 TAP-only nucleoplasm small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel K562 nplm TAP C\ subGroups view=Contigs cellType=t1K562 localization=NUCLEOPLASM protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapContigs\ type bed 6\ wgEncodeUwDnaseLhcnm2RawRep2 LHCNM2 Sg 2 bigWig 1.000000 59976.000000 LHCN-M2 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 57 0 0 0 127 127 127 0 0 0 regulation 0 longLabel LHCN-M2 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel LHCNM2 Sg 2\ subGroups view=zRSig cellType=t2LHCNM2 treatment=None rep=rep2\ track wgEncodeUwDnaseLhcnm2RawRep2\ type bigWig 1.000000 59976.000000\ wgEncodeHaibGenotypeMcf10aesRegionsRep1 MCF10A-Er-Src 1 bed 9 + MCF10A-Er-Src Copy number variants Replicate 1 from ENCODE/HAIB 0 57 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MCF10A-Er-Src Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel MCF10A-Er-Src 1\ subGroups cellType=t3MCF10AERSRC obtainedBy=Stanford treatment=None rep=rep1\ track wgEncodeHaibGenotypeMcf10aesRegionsRep1\ type bed 9 +\ wgEncodeOpenChromDnaseMcf7RandshrnaBaseOverlapSignal MCF7 shRNACtrl OS bigWig 0.000000 352.000000 MCF-7 Randomized shRNA Control DNaseI HS Overlap Signal from ENCODE/Duke 2 57 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 Randomized shRNA Control DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel MCF7 shRNACtrl OS\ subGroups view=SIGBO cellType=t2MCF7 treatment=RANDSHRNA\ track wgEncodeOpenChromDnaseMcf7RandshrnaBaseOverlapSignal\ type bigWig 0.000000 352.000000\ wgEncodeHaibRnaSeqPanc1RawRep1 PANC-1 1 bigWig 0.137402 1973.189941 PANC-1 RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 57 0 0 0 127 127 127 0 0 0 expression 0 longLabel PANC-1 RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel PANC-1 1\ subGroups view=RawSignal cellType=t3PANC1 treatment=zNONE rep=rep1\ track wgEncodeHaibRnaSeqPanc1RawRep1\ type bigWig 0.137402 1973.189941\ pgHG00733 PUR daughter '733 pgSnp PUR Trio Daughter HG00733 (Complete Genomics) 0 57 128 64 0 191 159 127 0 0 0 varRep 1 color 128,64,0\ longLabel PUR Trio Daughter HG00733 (Complete Genomics)\ parent pgSnpCg\ shortLabel PUR daughter '733\ subGroups view=C_CG id=CC_PUR_733 type=SNP\ track pgHG00733\ wgEncodeHaibMethyl450RptecSitesRep1 RPTEC bed 9 RPTEC Methylation 450K Bead Array from ENCODE/HAIB 1 57 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPTEC Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel RPTEC\ subGroups cellType=t3RPTEC obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450RptecSitesRep1\ type bed 9\ wgEncodeSydhHistoneU2osInputUcdSig U2OS Input bigWig 0.000000 11117.500000 U2OS Input Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH 2 57 0 0 0 127 127 127 0 0 0 regulation 0 longLabel U2OS Input Histone Modifications by ChIP-Seq Signal from ENCODE/SYDH\ origAssembly hg18\ parent wgEncodeSydhHistoneViewSignal off\ shortLabel U2OS Input\ subGroups view=Signal factor=INPUT cellType=cU2OS control=UCD treatment=NONE\ track wgEncodeSydhHistoneU2osInputUcdSig\ type bigWig 0.000000 11117.500000\ encTfChipPkENCFF681OWQ AG04450 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in AG04450 from ENCODE 3 (ENCFF681OWQ) 1 58 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in AG04450 from ENCODE 3 (ENCFF681OWQ)\ parent encTfChipPk off\ shortLabel AG04450 CTCF\ subGroups cellType=AG04450 factor=CTCF\ track encTfChipPkENCFF681OWQ\ wgEncodeUwTfbsAg04449CtcfStdRawRep2 AG49 CTCF Sg 2 bigWig 1.000000 14258.000000 AG04449 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 58 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04449 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AG49 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3AG04449 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAg04449CtcfStdRawRep2\ type bigWig 1.000000 14258.000000\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_ctss_rev AorticSmsToIL1b_00hr15minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_reverse 0 58 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep1%20%28LK34%29.CNhs13350.12653-134H7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12653-134H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_tpm_rev AorticSmsToIL1b_00hr15minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_reverse 1 58 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep1%20%28LK34%29.CNhs13350.12653-134H7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12653-134H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7\ urlLabel FANTOM5 Details:\ wgEncodeDukeAffyExonFibropag08395SimpleSignalRep2 FibroP_AG08395 2 bigBed 6 + FibroP (AG08395) Exon array Signal Rep 2 from ENCODE/Duke 0 58 0 0 0 127 127 127 1 0 0 expression 1 longLabel FibroP (AG08395) Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel FibroP_AG08395 2\ subGroups cellType=t3FIBROPAG08395 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonFibropag08395SimpleSignalRep2\ type bigBed 6 +\ wgEncodeAwgTfbsHaibGm12878Pou2f2Pcr1xUniPk GM12878 POU2F2 narrowPeak GM12878 TFBS Uniform Peaks of POU2F2 from ENCODE/HudsonAlpha/Analysis 1 58 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of POU2F2 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 POU2F2\ subGroups tier=a10 cellType=a10GM12878 factor=POU2F2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Pou2f2Pcr1xUniPk\ wgEncodeOpenChromFaireGm12892Pk GM12892 FAIRE Pk narrowPeak GM12892 FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 58 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM12892 FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel GM12892 FAIRE Pk\ subGroups view=Peaks cellType=t3GM12892 treatment=AANONE\ track wgEncodeOpenChromFaireGm12892Pk\ type narrowPeak\ wgEncodeHaibMethylRrbsGm19239DukeSitesRep2 GM19239 2 bed 9 + GM19239 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 58 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM19239 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel GM19239 2\ subGroups cellType=t3GM19239 obtainedBy=DUKE treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsGm19239DukeSitesRep2\ type bed 9 +\ wgEncodeHaibTfbsGm12878GabpPcr2xRawRep2 GM78 GABP PCR2 2 bigWig 0.102584 210.141998 GM12878 GABP PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 58 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 GABP PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel GM78 GABP PCR2 2\ subGroups view=RawSignal factor=GABP cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878GabpPcr2xRawRep2\ type bigWig 0.102584 210.141998\ wgEncodeSydhTfbsGm12878P300bStdSig GM78 p300 Std bigWig 1.000000 5365.000000 GM12878 p300 SC584 Standard ChIP-seq Signal from ENCODE/SYDH 2 58 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 p300 SC584 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 p300 Std\ subGroups view=Signal factor=P300SC584 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878P300bStdSig\ type bigWig 1.000000 5365.000000\ wgEncodeBroadHistoneH1hescHdac2a300705aPk H1-hESC HDAC2 broadPeak H1-hESC HDAC2 (A300-705A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 58 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC HDAC2 (A300-705A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC HDAC2\ subGroups view=Peaks factor=HDAC2A300705A cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescHdac2a300705aPk\ type broadPeak\ wgEncodeCshlLongRnaSeqH1hescCellLongnonpolyaAlnRep2 H1hSC cel pA- A 2 bam H1-hESC whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 58 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel H1hSC cel pA- A 2\ subGroups view=Alignments cellType=t1H1HESC localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescCellLongnonpolyaAlnRep2\ type bam\ wgEncodeUwDgfHaspPk HA-sp Pk narrowPeak HA-sp DNaseI DGF Peaks from ENCODE/UW 0 58 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-sp DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HA-sp Pk\ subGroups view=Peaks cellType=t3HAASP treatment=aNONE rep=rep1\ track wgEncodeUwDgfHaspPk\ type narrowPeak\ wgEncodeUwAffyExonArrayHbvpSimpleSignalRep1 HBVP 1 broadPeak HBVP Exon-array Signal Rep 1 from ENCODE/UW 0 58 0 0 0 127 127 127 0 0 0 expression 1 longLabel HBVP Exon-array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HBVP 1\ subGroups cellType=t3HBVP rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHbvpSimpleSignalRep1\ type broadPeak\ wgEncodeCaltechRnaSeqHelas3R2x75Th1014Il200SigRep2V4 HeLa 2x75 Sg 2 bigWig 0.021200 80230.414062 HeLa-S3 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech 2 58 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel HeLa 2x75 Sg 2\ subGroups view=Signal cellType=t2HELAS3 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHelas3R2x75Th1014Il200SigRep2V4\ type bigWig 0.021200 80230.414062\ wgEncodeGisRnaPetHelas3CellPapClustersRep1 HeLa cell pA+ 1 bed 6 + HeLa-S3 whole cell polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS 2 58 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel HeLa cell pA+ 1\ subGroups view=v1Clusters cellType=bHELAS3 cloned=Free localization=cell rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHelas3CellPapClustersRep1\ type bed 6 +\ wgEncodeUwHistoneHelas3H3k4me3StdPkRep1 HeLa H3K4M3 Pk 1 narrowPeak HeLa-S3 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 58 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HeLa H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t2HELAS3 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k4me3StdPkRep1\ type narrowPeak\ wgEncodeAwgDnaseUwHmveclblUniPk HMVEC-LBl DNase narrowPeak HMVEC-LBl DNaseI HS Uniform Peaks from ENCODE/Analysis 1 58 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMVEC-LBl DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HMVEC-LBl DNase\ subGroups tier=a30 cellType=HMVEC-LBl\ track wgEncodeAwgDnaseUwHmveclblUniPk\ wgEncodeOpenChromChipHuvecCmycSig HUVEC cMyc DS bigWig 0.000000 2.169800 HUVEC cMyc TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 58 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC cMyc TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel HUVEC cMyc DS\ subGroups treatment=AANONE view=SIG factor=CMYC cellType=t2HUVEC\ track wgEncodeOpenChromChipHuvecCmycSig\ type bigWig 0.000000 2.169800\ wgEncodeUwRepliSeqImr90ValleysRep1 IMR90 Vly 1 bed 9 IMR90 Repli-seq Valleys Rep 1 from ENCODE/UW 0 58 0 0 0 127 127 127 1 0 0 regulation 1 longLabel IMR90 Repli-seq Valleys Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewValleys off\ shortLabel IMR90 Vly 1\ subGroups view=v3Valleys cellType=t2IMR90 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqImr90ValleysRep1\ type bed 9\ wgEncodeRikenCageK562CytosolPamPlusSignal K562 cyto pA- + 1 bigWig 0.120000 6131.720215 K562 cytosol polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 58 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal on\ shortLabel K562 cyto pA- + 1\ subGroups view=PlusRawSignal cellType=t1K562 localization=cytosol rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageK562CytosolPamPlusSignal\ type bigWig 0.120000 6131.720215\ wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapMinusRawRep3 K562 nplm TAP - 1 bigWig 1.000000 2388836.000000 K562 TAP-only nucleoplasm small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 58 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only nucleoplasm small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel K562 nplm TAP - 1\ subGroups view=MinusSignal cellType=t1K562 localization=NUCLEOPLASM protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapMinusRawRep3\ type bigWig 1.000000 2388836.000000\ wgEncodeHaibGenotypeMcf10aesRegionsRep2 MCF10A-Er-Src 2 bed 9 + MCF10A-Er-Src Copy number variants Replicate 2 from ENCODE/HAIB 0 58 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MCF10A-Er-Src Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel MCF10A-Er-Src 2\ subGroups cellType=t3MCF10AERSRC obtainedBy=Stanford treatment=None rep=rep2\ track wgEncodeHaibGenotypeMcf10aesRegionsRep2\ type bed 9 +\ wgEncodeUwDnaseMcf7Est100nm1hHotspotsRep1 MCF7 Est1h Ht 1 broadPeak MCF-7 Estradiol 100 nM 1 hr DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 58 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 Estradiol 100 nM 1 hr DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel MCF7 Est1h Ht 1\ subGroups view=Hot cellType=t2MCF7 treatment=EST100NM1H rep=rep1\ track wgEncodeUwDnaseMcf7Est100nm1hHotspotsRep1\ type broadPeak\ wgEncodeOpenChromDnaseMcf7Pk MCF7 Pk narrowPeak MCF-7 DNaseI HS Peaks from ENCODE/Duke 3 58 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel MCF7 Pk\ subGroups view=Peaks cellType=t2MCF7 treatment=zNONE\ track wgEncodeOpenChromDnaseMcf7Pk\ type narrowPeak\ wgEncodeHaibRnaSeqPanc1AlnRep1 PANC-1 1 bam PANC-1 RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 58 0 0 0 127 127 127 0 0 0 expression 1 longLabel PANC-1 RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel PANC-1 1\ subGroups view=Alignments cellType=t3PANC1 treatment=zNONE rep=rep1\ track wgEncodeHaibRnaSeqPanc1AlnRep1\ type bam\ pgHG00733indel PUR HG00733 indel pgSnp PUR HG00733 (Daughter) indel (Complete Genomics) 0 58 0 0 0 127 127 127 0 0 0 varRep 1 longLabel PUR HG00733 (Daughter) indel (Complete Genomics)\ parent pgSnpCg\ shortLabel PUR HG00733 indel\ subGroups view=C_CG id=CC_PUR_733 type=Indel\ track pgHG00733indel\ wgEncodeHaibMethyl450SaecSitesRep1 SAEC bed 9 SAEC Methylation 450K Bead Array from ENCODE/HAIB 1 58 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel SAEC\ subGroups cellType=t3SAEC obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450SaecSitesRep1\ type bed 9\ encTfChipPkENCFF622DUX AG09309 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in AG09309 from ENCODE 3 (ENCFF622DUX) 1 59 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in AG09309 from ENCODE 3 (ENCFF622DUX)\ parent encTfChipPk off\ shortLabel AG09309 CTCF\ subGroups cellType=AG09309 factor=CTCF\ track encTfChipPkENCFF622DUX\ wgEncodeUwTfbsAg04449InputStdRawRep1 AG49 In Sg 1 bigWig 1.000000 14656.000000 AG04449 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 59 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04449 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AG49 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3AG04449 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg04449InputStdRawRep1\ type bigWig 1.000000 14656.000000\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_ctss_fwd AorticSmsToIL1b_00hr15minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_forward 0 59 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep2%20%28LK35%29.CNhs13370.12751-136A6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12751-136A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_tpm_fwd AorticSmsToIL1b_00hr15minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_forward 1 59 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep2%20%28LK35%29.CNhs13370.12751-136A6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12751-136A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6\ urlLabel FANTOM5 Details:\ pgNA18526 CHB NA18526 pgSnp CHB NA18526 (Complete Genomics) 0 59 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CHB NA18526 (Complete Genomics)\ parent pgSnpCg\ shortLabel CHB NA18526\ subGroups view=C_CG id=CC_div_GS18526 type=SNP\ track pgNA18526\ wgEncodeDukeAffyExonFibropag08395SimpleSignalRep3 FibroP_AG08395 3 bigBed 6 + FibroP (AG08395) Exon array Signal Rep 3 from ENCODE/Duke 0 59 0 0 0 127 127 127 1 0 0 expression 1 longLabel FibroP (AG08395) Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel FibroP_AG08395 3\ subGroups cellType=t3FIBROPAG08395 treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonFibropag08395SimpleSignalRep3\ type bigBed 6 +\ wgEncodeAwgTfbsHaibGm12878Rad21V0416101UniPk GM12878 RAD21 h narrowPeak GM12878 TFBS Uniform Peaks of Rad21 from ENCODE/HudsonAlpha/Analysis 1 59 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of Rad21 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 RAD21 h\ subGroups tier=a10 cellType=a10GM12878 factor=RAD21 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Rad21V0416101UniPk\ wgEncodeOpenChromFaireGm12892Sig GM12892 FAIRE DS bigWig 0.000000 0.395000 GM12892 FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 59 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM12892 FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel GM12892 FAIRE DS\ subGroups view=SIG cellType=t3GM12892 treatment=AANONE\ track wgEncodeOpenChromFaireGm12892Sig\ type bigWig 0.000000 0.395000\ wgEncodeHaibMethylRrbsGm19240DukeSitesRep1 GM19240 1 bed 9 + GM19240 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 59 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM19240 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel GM19240 1\ subGroups cellType=t3GM19240 obtainedBy=DUKE treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsGm19240DukeSitesRep1\ type bed 9 +\ wgEncodeHaibTfbsGm12878Irf4sc6059Pcr1xPkRep1 GM78 IRF4 PCR1 1 broadPeak GM12878 IRF4 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 59 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 IRF4 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 IRF4 PCR1 1\ subGroups view=Peaks factor=IRF4SC6059 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Irf4sc6059Pcr1xPkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878Pol2IggmusPk GM78 Pol2 IgM narrowPeak GM12878 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 59 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks on\ shortLabel GM78 Pol2 IgM\ subGroups view=Peaks factor=POL2 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Pol2IggmusPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescHdac2a300705aSig H1-hESC HDAC2 bigWig 0.040000 387.519989 H1-hESC HDAC2 (A300-705A) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 59 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC HDAC2 (A300-705A) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC HDAC2\ subGroups view=Signal factor=HDAC2A300705A cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescHdac2a300705aSig\ type bigWig 0.040000 387.519989\ wgEncodeCshlLongRnaSeqH1hescCellPamContigs H1hSC cel pA- C bed 6 + H1-hESC whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 59 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel H1hSC cel pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1H1HESC localization=CELL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqH1hescCellPamContigs\ type bed 6 +\ wgEncodeUwDgfHaspSig HA-sp Sig bigWig 1.000000 92887.000000 HA-sp DNaseI DGF Per-base Signal from ENCODE/UW 2 59 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HA-sp DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HA-sp Sig\ subGroups view=Signal cellType=t3HAASP treatment=aNONE rep=rep1\ track wgEncodeUwDgfHaspSig\ type bigWig 1.000000 92887.000000\ wgEncodeUwAffyExonArrayHbvsmcSimpleSignalRep1 HBVSMC 1 broadPeak HBVSMC Exon-array Signal Rep 1 from ENCODE/UW 0 59 0 0 0 127 127 127 0 0 0 expression 1 longLabel HBVSMC Exon-array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HBVSMC 1\ subGroups cellType=t3HBVSMC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHbvsmcSimpleSignalRep1\ type broadPeak\ wgEncodeCaltechRnaSeqHelas3R2x75Il200SplicesRep1V2 HeLa 2x75 Sp 1 bam HeLa-S3 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 59 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel HeLa 2x75 Sp 1\ subGroups view=Splices cellType=t2HELAS3 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHelas3R2x75Il200SplicesRep1V2\ type bam\ wgEncodeGisRnaPetHelas3CellPapMinusRawRep1 HeLa cell pA+ - 1 bigWig 1.000000 938357.000000 HeLa-S3 whole cell polyA+ clone-free RNA PET Minus Signal Rep 1 from ENCODE/GIS 2 59 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ clone-free RNA PET Minus Signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel HeLa cell pA+ - 1\ subGroups view=v2MinusRawSignal cellType=bHELAS3 cloned=Free localization=cell rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHelas3CellPapMinusRawRep1\ type bigWig 1.000000 938357.000000\ wgEncodeUwHistoneHelas3H3k4me3StdRawRep1 HeLa H3K4M3 Sg 1 bigWig 1.000000 3307.000000 HeLa-S3 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 59 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HeLa H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t2HELAS3 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k4me3StdRawRep1\ type bigWig 1.000000 3307.000000\ wgEncodeAwgDnaseUwHmvecllyUniPk HMVEC-LLy DNase narrowPeak HMVEC-LLy DNaseI HS Uniform Peaks from ENCODE/Analysis 1 59 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMVEC-LLy DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HMVEC-LLy DNase\ subGroups tier=a30 cellType=HMVEC-LLy\ track wgEncodeAwgDnaseUwHmvecllyUniPk\ wgEncodeOpenChromChipHuvecCmycBaseOverlapSignal HUVEC cMyc OS bigWig 0.000000 530.000000 HUVEC cMyc TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 59 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC cMyc TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel HUVEC cMyc OS\ subGroups treatment=AANONE view=SIGBO factor=CMYC cellType=t2HUVEC\ track wgEncodeOpenChromChipHuvecCmycBaseOverlapSignal\ type bigWig 0.000000 530.000000\ wgEncodeUwRepliSeqImr90WaveSignalRep1 IMR90 Ws 1 bigWig -4.765058 90.173477 IMR90 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW 2 59 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewWaveSignal off\ shortLabel IMR90 Ws 1\ subGroups view=v4WaveSignal cellType=t2IMR90 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqImr90WaveSignalRep1\ type bigWig -4.765058 90.173477\ wgEncodeRikenCageK562CytosolPamMinusSignal K562 cyto pA- - 1 bigWig 0.120000 9517.360352 K562 cytosol polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 59 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal on\ shortLabel K562 cyto pA- - 1\ subGroups view=MinusRawSignal cellType=t1K562 localization=cytosol rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageK562CytosolPamMinusSignal\ type bigWig 0.120000 9517.360352\ wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapMinusRawRep4 K562 nplm TAP - 2 bigWig 1.000000 3143187.000000 K562 TAP-only nucleoplasm small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 59 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only nucleoplasm small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel K562 nplm TAP - 2\ subGroups view=MinusSignal cellType=t1K562 localization=NUCLEOPLASM protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapMinusRawRep4\ type bigWig 1.000000 3143187.000000\ wgEncodeHaibGenotypeMcf10aesRegionsRep3 MCF10A-Er-Src 3 bed 9 + MCF10A-Er-Src Copy number variants Replicate 3 from ENCODE/HAIB 0 59 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MCF10A-Er-Src Copy number variants Replicate 3 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel MCF10A-Er-Src 3\ subGroups cellType=t3MCF10AERSRC obtainedBy=Stanford treatment=None rep=rep3\ track wgEncodeHaibGenotypeMcf10aesRegionsRep3\ type bed 9 +\ wgEncodeOpenChromDnaseMcf7Sig MCF7 DS bigWig 0.000000 0.624200 MCF-7 DNaseI HS Density Signal from ENCODE/Duke 2 59 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel MCF7 DS\ subGroups view=SIG cellType=t2MCF7 treatment=zNONE\ track wgEncodeOpenChromDnaseMcf7Sig\ type bigWig 0.000000 0.624200\ wgEncodeUwDnaseMcf7Estctrl0hHotspotsRep1 MCF7 EstCtrl Ht 1 broadPeak MCF-7 Estradiol Control 0 hr DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 59 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 Estradiol Control 0 hr DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel MCF7 EstCtrl Ht 1\ subGroups view=Hot cellType=t2MCF7 treatment=ESTCTRL0H rep=rep1\ track wgEncodeUwDnaseMcf7Estctrl0hHotspotsRep1\ type broadPeak\ wgEncodeHaibRnaSeqPanc1RawRep2 PANC-1 2 bigWig 0.146817 2090.860107 PANC-1 RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 59 0 0 0 127 127 127 0 0 0 expression 0 longLabel PANC-1 RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel PANC-1 2\ subGroups view=RawSignal cellType=t3PANC1 treatment=zNONE rep=rep2\ track wgEncodeHaibRnaSeqPanc1RawRep2\ type bigWig 0.146817 2090.860107\ wgEncodeHaibMethyl450SkmcSitesRep1 SKMC bed 9 SKMC Methylation 450K Bead Array from ENCODE/HAIB 1 59 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SKMC Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel SKMC\ subGroups cellType=t3SKMC obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450SkmcSitesRep1\ type bed 9\ encTfChipPkENCFF245PXW AG09319 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in AG09319 from ENCODE 3 (ENCFF245PXW) 1 60 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in AG09319 from ENCODE 3 (ENCFF245PXW)\ parent encTfChipPk off\ shortLabel AG09319 CTCF\ subGroups cellType=AG09319 factor=CTCF\ track encTfChipPkENCFF245PXW\ wgEncodeUwTfbsAg04450CtcfStdHotspotsRep1 AG50 CTCF Ht 1 broadPeak AG04450 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 60 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel AG50 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3AG04450 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg04450CtcfStdHotspotsRep1\ type broadPeak\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_ctss_rev AorticSmsToIL1b_00hr15minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_reverse 0 60 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep2%20%28LK35%29.CNhs13370.12751-136A6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12751-136A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_tpm_rev AorticSmsToIL1b_00hr15minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_reverse 1 60 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep2%20%28LK35%29.CNhs13370.12751-136A6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12751-136A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6\ urlLabel FANTOM5 Details:\ pgNA18526indel CHB NA18526 indel pgSnp CHB NA18526 indel (Complete Genomics) 0 60 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CHB NA18526 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CHB NA18526 indel\ subGroups view=C_CG id=CC_div_GS18526 type=Indel\ track pgNA18526indel\ wgEncodeDukeAffyExonFibropag08396SimpleSignalRep1 FibroP_AG08396 1 bigBed 6 + FibroP (AG08396) Exon array Signal Rep 1 from ENCODE/Duke 0 60 0 0 0 127 127 127 1 0 0 expression 1 longLabel FibroP (AG08396) Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel FibroP_AG08396 1\ subGroups cellType=t3FIBROPAG08396 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonFibropag08396SimpleSignalRep1\ type bigBed 6 +\ wgEncodeAwgTfbsSydhGm12878Rad21IggrabUniPk GM12878 RAD21 s narrowPeak GM12878 TFBS Uniform Peaks of Rad21 from ENCODE/Stanford/Analysis 1 60 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of Rad21 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 RAD21 s\ subGroups tier=a10 cellType=a10GM12878 factor=RAD21 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Rad21IggrabUniPk\ wgEncodeOpenChromFaireGm12892BaseOverlapSignal GM12892 FAIRE OS bigWig 0.000000 1267.000000 GM12892 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 60 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM12892 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel GM12892 FAIRE OS\ subGroups view=SIGBO cellType=t3GM12892 treatment=AANONE\ track wgEncodeOpenChromFaireGm12892BaseOverlapSignal\ type bigWig 0.000000 1267.000000\ wgEncodeHaibMethylRrbsGm19240DukeSitesRep2 GM19240 2 bed 9 + GM19240 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 60 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM19240 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel GM19240 2\ subGroups cellType=t3GM19240 obtainedBy=DUKE treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsGm19240DukeSitesRep2\ type bed 9 +\ wgEncodeHaibTfbsGm12878Irf4sc6059Pcr1xRawRep1 GM78 IRF4 PCR1 1 bigWig 0.188264 148.587006 GM12878 IRF4 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 60 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 IRF4 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 IRF4 PCR1 1\ subGroups view=RawSignal factor=IRF4SC6059 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Irf4sc6059Pcr1xRawRep1\ type bigWig 0.188264 148.587006\ wgEncodeSydhTfbsGm12878Pol2IggmusSig GM78 Pol2 IgM bigWig 0.000000 21303.699219 GM12878 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 60 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal on\ shortLabel GM78 Pol2 IgM\ subGroups view=Signal factor=POL2 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Pol2IggmusSig\ type bigWig 0.000000 21303.699219\ wgEncodeBroadHistoneH1hescHdac6a301341aPk H1-hESC HDAC6 broadPeak H1-hESC HDAC6 (A301-341A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 60 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC HDAC6 (A301-341A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC HDAC6\ subGroups view=Peaks factor=HDAC6A301341A cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescHdac6a301341aPk\ type broadPeak\ wgEncodeCshlLongRnaSeqH1hescCellPamJunctions H1hSC cel pA- J bed 6 + H1-hESC whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 60 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel H1hSC cel pA- J\ subGroups view=Junctions cellType=t1H1HESC localization=CELL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqH1hescCellPamJunctions\ type bed 6 +\ wgEncodeUwDgfHaspRaw HA-sp Raw bigWig 1.000000 218346.000000 HA-sp DNaseI DGF Raw Signal from ENCODE/UW 0 60 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HA-sp DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HA-sp Raw\ subGroups view=zRaw cellType=t3HAASP treatment=aNONE rep=rep1\ track wgEncodeUwDgfHaspRaw\ type bigWig 1.000000 218346.000000\ wgEncodeUwAffyExonArrayHbvsmcSimpleSignalRep2 HBVSMC 2 broadPeak HBVSMC Exon-array Signal Rep 2 from ENCODE/UW 0 60 0 0 0 127 127 127 0 0 0 expression 1 longLabel HBVSMC Exon-array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HBVSMC 2\ subGroups cellType=t3HBVSMC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHbvsmcSimpleSignalRep2\ type broadPeak\ wgEncodeCaltechRnaSeqHelas3R2x75Il200SplicesRep2V2 HeLa 2x75 Sp 2 bam HeLa-S3 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 60 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel HeLa 2x75 Sp 2\ subGroups view=Splices cellType=t2HELAS3 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHelas3R2x75Il200SplicesRep2V2\ type bam\ wgEncodeGisRnaPetHelas3CellPapPlusRawRep1 HeLa cell pA+ + 1 bigWig 1.000000 771912.000000 HeLa-S3 whole cell polyA+ clone-free RNA PET Plus Signal Rep 1 from ENCODE/GIS 2 60 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ clone-free RNA PET Plus Signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel HeLa cell pA+ + 1\ subGroups view=v2PlusRawSignal cellType=bHELAS3 cloned=Free localization=cell rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHelas3CellPapPlusRawRep1\ type bigWig 1.000000 771912.000000\ wgEncodeUwHistoneHelas3H3k4me3StdHotspotsRep2 HeLa H3K4M3 Ht 2 broadPeak HeLa-S3 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 60 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HeLa H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t2HELAS3 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeAwgDnaseUwHmvecdadUniPk HMVEC-dAd DNase narrowPeak HMVEC-dAd DNaseI HS Uniform Peaks from ENCODE/Analysis 1 60 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMVEC-dAd DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HMVEC-dAd DNase\ subGroups tier=a30 cellType=HMVEC-dAd\ track wgEncodeAwgDnaseUwHmvecdadUniPk\ wgEncodeOpenChromChipHuvecCtcfPk HUVEC CTCF Pk narrowPeak HUVEC CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 60 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel HUVEC CTCF Pk\ subGroups treatment=AANONE view=Peaks factor=CTCF cellType=t2HUVEC\ track wgEncodeOpenChromChipHuvecCtcfPk\ type narrowPeak\ wgEncodeUwRepliSeqImr90SumSignalRep1 IMR90 Sd 1 bigWig 1.000000 1949.000000 IMR90 Repli-seq Summed Densities Rep 1 from ENCODE/UW 0 60 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 Repli-seq Summed Densities Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewSumSignal off\ shortLabel IMR90 Sd 1\ subGroups view=v5SumSignal cellType=t2IMR90 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqImr90SumSignalRep1\ type bigWig 1.000000 1949.000000\ wgEncodeRikenCageK562CytosolPamAln K562 cyto pA- A 1 bam K562 cytosol polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN 0 60 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel K562 cyto pA- A 1\ subGroups view=Alignments cellType=t1K562 localization=cytosol rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageK562CytosolPamAln\ type bam\ wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapPlusRawRep3 K562 nplm TAP + 1 bigWig 1.000000 889514.000000 K562 TAP-only nucleoplasm small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 60 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only nucleoplasm small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel K562 nplm TAP + 1\ subGroups view=PlusSignal cellType=t1K562 localization=NUCLEOPLASM protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapPlusRawRep3\ type bigWig 1.000000 889514.000000\ wgEncodeHaibGenotypeMcf10aesTamRegionsRep1 MCF10A Tam 1 bed 9 + MCF10A-Er-Src Tamoxifen Copy number variants Replicate 1 from ENCODE/HAIB 0 60 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MCF10A-Er-Src Tamoxifen Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel MCF10A Tam 1\ subGroups cellType=t3MCF10AESTAM obtainedBy=Stanford treatment=TAM rep=rep1\ track wgEncodeHaibGenotypeMcf10aesTamRegionsRep1\ type bed 9 +\ wgEncodeUwDnaseMcf7HotspotsRep1 MCF7 Ht 1 broadPeak MCF-7 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 60 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel MCF7 Ht 1\ subGroups view=Hot cellType=t2MCF7 rep=rep1 treatment=None\ track wgEncodeUwDnaseMcf7HotspotsRep1\ type broadPeak\ wgEncodeOpenChromDnaseMcf7BaseOverlapSignal MCF7 OS bigWig 0.000000 198.000000 MCF-7 DNaseI HS Overlap Signal from ENCODE/Duke 2 60 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel MCF7 OS\ subGroups view=SIGBO cellType=t2MCF7 treatment=zNONE\ track wgEncodeOpenChromDnaseMcf7BaseOverlapSignal\ type bigWig 0.000000 198.000000\ wgEncodeHaibRnaSeqPanc1AlnRep2 PANC-1 2 bam PANC-1 RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 60 0 0 0 127 127 127 0 0 0 expression 1 longLabel PANC-1 RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel PANC-1 2\ subGroups view=Alignments cellType=t3PANC1 treatment=zNONE rep=rep2\ track wgEncodeHaibRnaSeqPanc1AlnRep2\ type bam\ wgEncodeHaibMethyl450SknmcSitesRep1 SK-N-MC bed 9 SK-N-MC Methylation 450K Bead Array from ENCODE/HAIB 1 60 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-MC Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel SK-N-MC\ subGroups cellType=t3SKNMC obtainedBy=HAIB treatment=zNONE\ track wgEncodeHaibMethyl450SknmcSitesRep1\ type bed 9\ encTfChipPkENCFF746CIL AG10803 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in AG10803 from ENCODE 3 (ENCFF746CIL) 1 61 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in AG10803 from ENCODE 3 (ENCFF746CIL)\ parent encTfChipPk off\ shortLabel AG10803 CTCF\ subGroups cellType=AG10803 factor=CTCF\ track encTfChipPkENCFF746CIL\ wgEncodeUwTfbsAg04450CtcfStdPkRep1 AG50 CTCF Pk 1 narrowPeak AG04450 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 61 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel AG50 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3AG04450 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg04450CtcfStdPkRep1\ type narrowPeak\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_ctss_fwd AorticSmsToIL1b_00hr15minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_forward 0 61 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep3%20%28LK36%29.CNhs13578.12849-137C5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12849-137C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_tpm_fwd AorticSmsToIL1b_00hr15minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_forward 1 61 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep3%20%28LK36%29.CNhs13578.12849-137C5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12849-137C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseMonocd14Pk CD14 Pk narrowPeak Monocytes CD14+ DNaseI HS Peaks from ENCODE/Duke 3 61 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Monocytes CD14+ DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel CD14 Pk\ subGroups view=Peaks cellType=t2MONOCYTESCD14 treatment=zNONE\ track wgEncodeOpenChromDnaseMonocd14Pk\ type narrowPeak\ pgNA18537 CHB NA18537 pgSnp CHB NA18537 (Complete Genomics) 0 61 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CHB NA18537 (Complete Genomics)\ parent pgSnpCg\ shortLabel CHB NA18537\ subGroups view=C_CG id=CC_div_GS18537 type=SNP\ track pgNA18537\ wgEncodeDukeAffyExonFibropag08396SimpleSignalRep2 FibroP_AG08396 2 bigBed 6 + FibroP (AG08396) Exon array Signal Rep 2 from ENCODE/Duke 0 61 0 0 0 127 127 127 1 0 0 expression 1 longLabel FibroP (AG08396) Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel FibroP_AG08396 2\ subGroups cellType=t3FIBROPAG08396 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonFibropag08396SimpleSignalRep2\ type bigBed 6 +\ wgEncodeAwgTfbsSydhGm12878Corestsc30189IggmusUniPk GM12878 RCOR1 narrowPeak GM12878 TFBS Uniform Peaks of COREST_(sc-30189) from ENCODE/Stanford/Analysis 1 61 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of COREST_(sc-30189) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 RCOR1\ subGroups tier=a10 cellType=a10GM12878 factor=RCOR1 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Corestsc30189IggmusUniPk\ wgEncodeOpenChromFaireGm18507Pk GM18507 FAIRE Pk narrowPeak GM18507 FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 61 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM18507 FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel GM18507 FAIRE Pk\ subGroups view=Peaks cellType=t3GM18507 treatment=AANONE\ track wgEncodeOpenChromFaireGm18507Pk\ type narrowPeak\ wgEncodeHaibTfbsGm12878Irf4sc6059Pcr1xPkRep2 GM78 IRF4 PCR1 2 broadPeak GM12878 IRF4 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 61 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 IRF4 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 IRF4 PCR1 2\ subGroups view=Peaks factor=IRF4SC6059 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Irf4sc6059Pcr1xPkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12878Pol2StdPk GM78 Pol2 Std narrowPeak GM12878 Pol2 Standard ChIP-seq Peaks from ENCODE/SYDH 3 61 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Pol2 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks on\ shortLabel GM78 Pol2 Std\ subGroups view=Peaks factor=POL2 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Pol2StdPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescHdac6a301341aSig H1-hESC HDAC6 bigWig 0.040000 383.880005 H1-hESC HDAC6 (A301-341A) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 61 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC HDAC6 (A301-341A) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC HDAC6\ subGroups view=Signal factor=HDAC6A301341A cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescHdac6a301341aSig\ type bigWig 0.040000 383.880005\ wgEncodeCshlLongRnaSeqH1hescCellLongnonpolyaMinusRawSigRep1 H1hSC cel pA- - 1 bigWig 1.000000 764531.000000 H1-hESC whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 61 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel H1hSC cel pA- - 1\ subGroups view=MinusSignal cellType=t1H1HESC localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqH1hescCellLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 764531.000000\ wgEncodeHaibMethylRrbsHaeUwSitesRep1 HAEpiC 1 bed 9 + HAEpiC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 61 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAEpiC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HAEpiC 1\ subGroups cellType=t3HAEPIC obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHaeUwSitesRep1\ type bed 9 +\ wgEncodeUwDgfHaeHotspots HAEpiC Hot broadPeak HAEpiC DNaseI DGF Hotspots from ENCODE/UW 0 61 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAEpiC DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HAEpiC Hot\ subGroups view=Hotspots cellType=t3HAEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHaeHotspots\ type broadPeak\ wgEncodeUwAffyExonArrayHcfSimpleSignalRep1 HCF 1 broadPeak HCF Exon array Signal Rep 1 from ENCODE/UW 0 61 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCF Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HCF 1\ subGroups cellType=t3HCF rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHcfSimpleSignalRep1\ type broadPeak\ wgEncodeCaltechRnaSeqHelas3R1x75dAlignsRep1V2 HeLa 1x75D A 1 bam HeLa-S3 single read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 61 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 single read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel HeLa 1x75D A 1\ subGroups view=Aligns cellType=t2HELAS3 insertLength=ilNa readType=r1x75D rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHelas3R1x75dAlignsRep1V2\ type bam\ wgEncodeGisRnaPetHelas3CellPapAlnRep1 HeLa cell pA+ A 1 bam HeLa-S3 whole cell polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS 0 61 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel HeLa cell pA+ A 1\ subGroups view=v3Alignments cellType=bHELAS3 cloned=Free localization=cell rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHelas3CellPapAlnRep1\ type bam\ wgEncodeUwHistoneHelas3H3k4me3StdPkRep2 HeLa H3K4M3 Pk 2 narrowPeak HeLa-S3 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 61 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HeLa H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t2HELAS3 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k4me3StdPkRep2\ type narrowPeak\ wgEncodeAwgDnaseUwHmvecdbladUniPk HMVEC-dBl-A narrowPeak HMVEC-dBl-Ad DNaseI HS Uniform Peaks from ENCODE/Analysis 1 61 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMVEC-dBl-Ad DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HMVEC-dBl-A\ subGroups tier=a30 cellType=HMVEC-dBl-Ad\ track wgEncodeAwgDnaseUwHmvecdbladUniPk\ wgEncodeOpenChromChipHuvecCtcfSig HUVEC CTCF DS bigWig 0.000000 10.211700 HUVEC CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 61 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel HUVEC CTCF DS\ subGroups treatment=AANONE view=SIG factor=CTCF cellType=t2HUVEC\ track wgEncodeOpenChromChipHuvecCtcfSig\ type bigWig 0.000000 10.211700\ wgEncodeRikenCageK562CytosolPapTssHmm K562 cyto pA+ bed 6 K562 cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 61 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm on\ shortLabel K562 cyto pA+\ subGroups view=TssHmm cellType=t1K562 localization=cytosol rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageK562CytosolPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapPlusRawRep4 K562 nplm TAP + 2 bigWig 1.000000 1228583.000000 K562 TAP-only nucleoplasm small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 61 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only nucleoplasm small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel K562 nplm TAP + 2\ subGroups view=PlusSignal cellType=t1K562 localization=NUCLEOPLASM protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapPlusRawRep4\ type bigWig 1.000000 1228583.000000\ wgEncodeUwRepliSeqMcf7G1bPctSignalRep1 MCF-7 G1b 1 bigWig 1.000000 100.000000 MCF-7 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 61 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel MCF-7 G1b 1\ subGroups view=v1PctSignal cellType=t2MCF7 phase=p1G1B rep=rep1\ track wgEncodeUwRepliSeqMcf7G1bPctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeUwDnaseMcf7Est100nm1hPkRep1 MCF7 Est1h Pk 1 narrowPeak MCF-7 Estradiol 100 nM 1 hr DNaseI HS Peaks Rep 1 from ENCODE/UW 1 61 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 Estradiol 100 nM 1 hr DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel MCF7 Est1h Pk 1\ subGroups view=Peaks cellType=t2MCF7 treatment=EST100NM1H rep=rep1\ track wgEncodeUwDnaseMcf7Est100nm1hPkRep1\ type narrowPeak\ wgEncodeHaibGenotypeMelanoRegionsRep1 Melano 1 bed 9 + Melano Copy number variants Replicate 1 from ENCODE/HAIB 0 61 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Melano Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel Melano 1\ subGroups cellType=t3MELANO obtainedBy=Duke treatment=None rep=rep1\ track wgEncodeHaibGenotypeMelanoRegionsRep1\ type bed 9 +\ wgEncodeHaibRnaSeqPfsk1RawRep1 PFSK-1 1 bigWig 0.149150 1066.459961 PFSK-1 RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 61 0 0 0 127 127 127 0 0 0 expression 0 longLabel PFSK-1 RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel PFSK-1 1\ subGroups view=RawSignal cellType=t3PFSK1 treatment=zNONE rep=rep1\ track wgEncodeHaibRnaSeqPfsk1RawRep1\ type bigWig 0.149150 1066.459961\ wgEncodeHaibMethyl450SknshraSitesRep1 SK-N-SH_RA bed 9 SK-N-SH_RA Methylation 450K Bead Array from ENCODE/HAIB 1 61 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel SK-N-SH_RA\ subGroups cellType=t3SKNSHRA obtainedBy=UW treatment=zNONE\ track wgEncodeHaibMethyl450SknshraSitesRep1\ type bed 9\ wgEncodeUwTfbsAg04450CtcfStdRawRep1 AG50 CTCF Sg 1 bigWig 1.000000 13221.000000 AG04450 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 62 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04450 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AG50 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3AG04450 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg04450CtcfStdRawRep1\ type bigWig 1.000000 13221.000000\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_ctss_rev AorticSmsToIL1b_00hr15minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_reverse 0 62 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep3%20%28LK36%29.CNhs13578.12849-137C5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12849-137C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_tpm_rev AorticSmsToIL1b_00hr15minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_reverse 1 62 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep3%20%28LK36%29.CNhs13578.12849-137C5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12849-137C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF965BBC BE2C CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in BE2C from ENCODE 3 (ENCFF965BBC) 1 62 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in BE2C from ENCODE 3 (ENCFF965BBC)\ parent encTfChipPk off\ shortLabel BE2C CTCF\ subGroups cellType=BE2C factor=CTCF\ track encTfChipPkENCFF965BBC\ wgEncodeOpenChromDnaseMonocd14Sig CD14 DS bigWig 0.000000 2.037700 Monocytes CD14+ DNaseI HS Density Signal from ENCODE/Duke 2 62 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Monocytes CD14+ DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel CD14 DS\ subGroups view=SIG cellType=t2MONOCYTESCD14 treatment=zNONE\ track wgEncodeOpenChromDnaseMonocd14Sig\ type bigWig 0.000000 2.037700\ pgNA18537indel CHB NA18537 indel pgSnp CHB NA18537 indel (Complete Genomics) 0 62 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CHB NA18537 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CHB NA18537 indel\ subGroups view=C_CG id=CC_div_GS18537 type=Indel\ track pgNA18537indel\ wgEncodeDukeAffyExonFibropag08396SimpleSignalRep3 FibroP_AG08396 3 bigBed 6 + FibroP (AG08396) Exon array Signal Rep 3 from ENCODE/Duke 0 62 0 0 0 127 127 127 1 0 0 expression 1 longLabel FibroP (AG08396) Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel FibroP_AG08396 3\ subGroups cellType=t3FIBROPAG08396 treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonFibropag08396SimpleSignalRep3\ type bigBed 6 +\ wgEncodeAwgTfbsSydhGm12878NfkbTnfaIggrabUniPk GM12878+TNFa RELA narrowPeak GM12878 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis 1 62 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878+TNFa RELA\ subGroups tier=a10 cellType=a10GM12878 factor=RELA lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878NfkbTnfaIggrabUniPk\ wgEncodeOpenChromFaireGm18507Sig GM18507 FAIRE DS bigWig 0.000000 0.867300 GM18507 FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 62 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM18507 FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel GM18507 FAIRE DS\ subGroups view=SIG cellType=t3GM18507 treatment=AANONE\ track wgEncodeOpenChromFaireGm18507Sig\ type bigWig 0.000000 0.867300\ wgEncodeHaibTfbsGm12878Irf4sc6059Pcr1xRawRep2 GM78 IRF4 PCR1 2 bigWig 0.161846 177.746994 GM12878 IRF4 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 62 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 IRF4 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 IRF4 PCR1 2\ subGroups view=RawSignal factor=IRF4SC6059 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Irf4sc6059Pcr1xRawRep2\ type bigWig 0.161846 177.746994\ wgEncodeSydhTfbsGm12878Pol2StdSig GM78 Pol2 Std bigWig 0.000000 26789.000000 GM12878 Pol2 Standard ChIP-seq Signal from ENCODE/SYDH 2 62 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Pol2 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal on\ shortLabel GM78 Pol2 Std\ subGroups view=Signal factor=POL2 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Pol2StdSig\ type bigWig 0.000000 26789.000000\ wgEncodeBroadHistoneH1hescJarid1aab26049StdPk H1-hESC JARID1A broadPeak H1-hESC JARID1A (ab26049) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 62 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC JARID1A (ab26049) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC JARID1A\ subGroups view=Peaks factor=JARID1AAB26049 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescJarid1aab26049StdPk\ type broadPeak\ wgEncodeCshlLongRnaSeqH1hescCellLongnonpolyaMinusRawSigRep2 H1hSC cel pA- - 2 bigWig 1.000000 770082.000000 H1-hESC whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 62 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel H1hSC cel pA- - 2\ subGroups view=MinusSignal cellType=t1H1HESC localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescCellLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 770082.000000\ wgEncodeHaibMethylRrbsHaeUwSitesRep2 HAEpiC 2 bed 9 + HAEpiC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 62 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAEpiC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HAEpiC 2\ subGroups cellType=t3HAEPIC obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHaeUwSitesRep2\ type bed 9 +\ wgEncodeUwDgfHaePkV2 HAEpiC Pk narrowPeak HAEpiC DNaseI DGF Peaks from ENCODE/UW 0 62 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAEpiC DNaseI DGF Peaks from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HAEpiC Pk\ subGroups view=Peaks cellType=t3HAEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHaePkV2\ type narrowPeak\ wgEncodeUwAffyExonArrayHcfSimpleSignalRep2 HCF 2 broadPeak HCF Exon array Signal Rep 2 from ENCODE/UW 0 62 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCF Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HCF 2\ subGroups cellType=t3HCF rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHcfSimpleSignalRep2\ type broadPeak\ wgEncodeCaltechRnaSeqHelas3R1x75dAlignsRep2V2 HeLa 1x75D A 2 bam HeLa-S3 single read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 62 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 single read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel HeLa 1x75D A 2\ subGroups view=Aligns cellType=t2HELAS3 insertLength=ilNa readType=r1x75D rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHelas3R1x75dAlignsRep2V2\ type bam\ wgEncodeGisRnaPetHelas3CytosolPapClustersRep1 HeLa cyto pA+ 1 bed 6 + HeLa-S3 cytosol polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS 2 62 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel HeLa cyto pA+ 1\ subGroups view=v1Clusters cellType=bHELAS3 cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHelas3CytosolPapClustersRep1\ type bed 6 +\ wgEncodeUwHistoneHelas3H3k4me3StdRawRep2 HeLa H3K4M3 Sg 2 bigWig 1.000000 4978.000000 HeLa-S3 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 62 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HeLa H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t2HELAS3 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k4me3StdRawRep2\ type bigWig 1.000000 4978.000000\ wgEncodeAwgDnaseUwHmvecdblneoUniPk HMVEC-dBl-N DNase narrowPeak HMVEC-dBl-Neo DNaseI HS Uniform Peaks from ENCODE/Analysis 1 62 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMVEC-dBl-Neo DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HMVEC-dBl-N DNase\ subGroups tier=a30 cellType=HMVEC-dBl-Neo\ track wgEncodeAwgDnaseUwHmvecdblneoUniPk\ wgEncodeOpenChromChipHuvecCtcfBaseOverlapSignal HUVEC CTCF OS bigWig 0.000000 1348.000000 HUVEC CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 62 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel HUVEC CTCF OS\ subGroups treatment=AANONE view=SIGBO factor=CTCF cellType=t2HUVEC\ track wgEncodeOpenChromChipHuvecCtcfBaseOverlapSignal\ type bigWig 0.000000 1348.000000\ wgEncodeRikenCageK562CytosolPapPlusSignalRep1 K562 cyto pA+ + 1 bigWig 0.040000 10278.469727 K562 cytosol polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 62 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal on\ shortLabel K562 cyto pA+ + 1\ subGroups view=PlusRawSignal cellType=t1K562 localization=cytosol rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageK562CytosolPapPlusSignalRep1\ type bigWig 0.040000 10278.469727\ wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapContigs K562 nucl TAP C bed 6 K562 TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL 2 62 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel K562 nucl TAP C\ subGroups view=Contigs cellType=t1K562 localization=NUCLEUS protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapContigs\ type bed 6\ wgEncodeUwRepliSeqMcf7S1PctSignalRep1 MCF-7 S1 1 bigWig 1.000000 100.000000 MCF-7 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 62 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel MCF-7 S1 1\ subGroups view=v1PctSignal cellType=t2MCF7 phase=p2S1 rep=rep1\ track wgEncodeUwRepliSeqMcf7S1PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeUwDnaseMcf7Estctrl0hPkRep1 MCF7 EstCtrl Pk 1 narrowPeak MCF-7 Estradiol Control 0 hr DNaseI HS Peaks Rep 1 from ENCODE/UW 1 62 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 Estradiol Control 0 hr DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel MCF7 EstCtrl Pk 1\ subGroups view=Peaks cellType=t2MCF7 treatment=ESTCTRL0H rep=rep1\ track wgEncodeUwDnaseMcf7Estctrl0hPkRep1\ type narrowPeak\ wgEncodeHaibGenotypeMelanoRegionsRep2 Melano 2 bed 9 + Melano Copy number variants Replicate 2 from ENCODE/HAIB 0 62 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Melano Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel Melano 2\ subGroups cellType=t3MELANO obtainedBy=Duke treatment=None rep=rep2\ track wgEncodeHaibGenotypeMelanoRegionsRep2\ type bed 9 +\ wgEncodeHaibRnaSeqPfsk1AlnRep1 PFSK-1 1 bam PFSK-1 RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 62 0 0 0 127 127 127 0 0 0 expression 1 longLabel PFSK-1 RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel PFSK-1 1\ subGroups view=Alignments cellType=t3PFSK1 treatment=zNONE rep=rep1\ track wgEncodeHaibRnaSeqPfsk1AlnRep1\ type bam\ wgEncodeHaibMethyl450T47dDm002p24hSitesRep1 T-47D DMSO bed 9 T-47D DMSO Methylation 450K Bead Array from ENCODE/HAIB 1 62 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D DMSO Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel T-47D DMSO\ subGroups cellType=t3T47D obtainedBy=HAIB treatment=DM002P24H\ track wgEncodeHaibMethyl450T47dDm002p24hSitesRep1\ type bed 9\ wgEncodeUwTfbsAg04450CtcfStdHotspotsRep2 AG50 CTCF Ht 2 broadPeak AG04450 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 63 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel AG50 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3AG04450 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAg04450CtcfStdHotspotsRep2\ type broadPeak\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_ctss_fwd AorticSmsToIL1b_00hr30minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_forward 0 63 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep1%20%28LK37%29.CNhs13351.12654-134H8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12654-134H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_tpm_fwd AorticSmsToIL1b_00hr30minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_forward 1 63 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep1%20%28LK37%29.CNhs13351.12654-134H8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12654-134H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF649IRT BJ CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in BJ from ENCODE 3 (ENCFF649IRT) 1 63 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in BJ from ENCODE 3 (ENCFF649IRT)\ parent encTfChipPk off\ shortLabel BJ CTCF\ subGroups cellType=BJ factor=CTCF\ track encTfChipPkENCFF649IRT\ wgEncodeOpenChromDnaseMonocd14BaseOverlapSignal CD14 OS bigWig 0.000000 253.000000 Monocytes CD14+ DNaseI HS Overlap Signal from ENCODE/Duke 2 63 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Monocytes CD14+ DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel CD14 OS\ subGroups view=SIGBO cellType=t2MONOCYTESCD14 treatment=zNONE\ track wgEncodeOpenChromDnaseMonocd14BaseOverlapSignal\ type bigWig 0.000000 253.000000\ pgNA18555 CHB NA18555 pgSnp CHB NA18555 (Complete Genomics) 0 63 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CHB NA18555 (Complete Genomics)\ parent pgSnpCg\ shortLabel CHB NA18555\ subGroups view=C_CG id=CC_div_GS18555 type=SNP\ track pgNA18555\ wgEncodeDukeAffyExonFibropag20443SimpleSignalRep1 FibroP_AG20443 1 bigBed 6 + FibroP (AG20443) Exon array Signal Rep 1 from ENCODE/Duke 0 63 0 0 0 127 127 127 1 0 0 expression 1 longLabel FibroP (AG20443) Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel FibroP_AG20443 1\ subGroups cellType=t3FIBROPAG20443 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonFibropag20443SimpleSignalRep1\ type bigBed 6 +\ wgEncodeAwgTfbsHaibGm12878NrsfPcr1xUniPk GM12878 REST narrowPeak GM12878 TFBS Uniform Peaks of NRSF from ENCODE/HudsonAlpha/Analysis 1 63 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of NRSF from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 REST\ subGroups tier=a10 cellType=a10GM12878 factor=REST lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878NrsfPcr1xUniPk\ wgEncodeOpenChromFaireGm18507BaseOverlapSignal GM18507 FAIRE OS bigWig 0.000000 2552.000000 GM18507 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 63 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM18507 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel GM18507 FAIRE OS\ subGroups view=SIGBO cellType=t3GM18507 treatment=AANONE\ track wgEncodeOpenChromFaireGm18507BaseOverlapSignal\ type bigWig 0.000000 2552.000000\ wgEncodeHaibTfbsGm12878Mef2aPcr1xPkRep1 GM78 MEF2A PCR1 1 broadPeak GM12878 MEF2A PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 63 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 MEF2A PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 MEF2A PCR1 1\ subGroups view=Peaks factor=MEF2A cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Mef2aPcr1xPkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878Pol2s2IggmusPk GM78 PolS IgM narrowPeak GM12878 Pol2 S2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 63 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Pol2 S2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 PolS IgM\ subGroups view=Peaks factor=POL2S2 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Pol2s2IggmusPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescJarid1aab26049StdSig H1-hESC JARID1A bigWig 0.040000 31501.599609 H1-hESC JARID1A (ab26049) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 63 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC JARID1A (ab26049) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC JARID1A\ subGroups view=Signal factor=JARID1AAB26049 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescJarid1aab26049StdSig\ type bigWig 0.040000 31501.599609\ wgEncodeCshlLongRnaSeqH1hescCellLongnonpolyaPlusRawSigRep1 H1hSC cel pA- + 1 bigWig 1.000000 1138574.000000 H1-hESC whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 63 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel H1hSC cel pA- + 1\ subGroups view=PlusSignal cellType=t1H1HESC localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqH1hescCellLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 1138574.000000\ wgEncodeUwDgfHaeSig HAEpiC Sig bigWig 1.000000 30034.000000 HAEpiC DNaseI DGF Per-base Signal from ENCODE/UW 2 63 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HAEpiC DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HAEpiC Sig\ subGroups view=Signal cellType=t3HAEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHaeSig\ type bigWig 1.000000 30034.000000\ wgEncodeHaibMethylRrbsHcfUwSitesRep1 HCF 1 bed 9 + HCF Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 63 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCF Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HCF 1\ subGroups cellType=t3HCF obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHcfUwSitesRep1\ type bed 9 +\ wgEncodeUwAffyExonArrayHcfaaSimpleSignalRep1 HCFaa 1 broadPeak HCFaa Exon array Signal Rep 1 from ENCODE/UW 0 63 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCFaa Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HCFaa 1\ subGroups cellType=t3HCFAA rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHcfaaSimpleSignalRep1\ type broadPeak\ wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UMinusRawRep1V4 HeLa 1x75D - 1 bigWig -23652.000000 -0.021200 HeLa-S3 single read RNA-seq Minus Signal Rep 1 from ENCODE/Caltech 2 63 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 single read RNA-seq Minus Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewMinusSignal off\ shortLabel HeLa 1x75D - 1\ subGroups view=MinusSignal cellType=t2HELAS3 readType=r1x75D insertLength=ilNa rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UMinusRawRep1V4\ type bigWig -23652.000000 -0.021200\ wgEncodeGisRnaPetHelas3CytosolPapMinusRawRep1 HeLa cyto pA+ - 1 bigWig 1.000000 733576.000000 HeLa-S3 cytosol polyA+ clone-free RNA PET Minus Signal Rep 1 from ENCODE/GIS 2 63 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ clone-free RNA PET Minus Signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel HeLa cyto pA+ - 1\ subGroups view=v2MinusRawSignal cellType=bHELAS3 cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHelas3CytosolPapMinusRawRep1\ type bigWig 1.000000 733576.000000\ wgEncodeUwHistoneHelas3H3k27me3StdHotspotsRep1 HeLa H3K27M3 Ht 1 broadPeak HeLa-S3 H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 63 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HeLa H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t2HELAS3 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k27me3StdHotspotsRep1\ type broadPeak\ wgEncodeAwgDnaseUwHmvecdlyadUniPk HMVEC-dLy-A DNase narrowPeak HMVEC-dLy-Ad DNaseI HS Uniform Peaks from ENCODE/Analysis 1 63 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMVEC-dLy-Ad DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HMVEC-dLy-A DNase\ subGroups tier=a30 cellType=HMVEC-dLy-Ad\ track wgEncodeAwgDnaseUwHmvecdlyadUniPk\ wgEncodeOpenChromChipHuvecPol2Pk HUVEC Pol2 Pk narrowPeak HUVEC Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 63 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel HUVEC Pol2 Pk\ subGroups treatment=AANONE view=Peaks factor=POL2 cellType=t2HUVEC\ track wgEncodeOpenChromChipHuvecPol2Pk\ type narrowPeak\ wgEncodeRikenCageK562CytosolPapPlusSignalRep2 K562 cyto pA+ + 2 bigWig 0.060000 10864.750000 K562 cytosol polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 63 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel K562 cyto pA+ + 2\ subGroups view=PlusRawSignal cellType=t1K562 localization=cytosol rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageK562CytosolPapPlusSignalRep2\ type bigWig 0.060000 10864.750000\ wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapMinusRawRep1 K562 nucl TAP - 1 bigWig 1.000000 2509548.000000 K562 TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 63 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel K562 nucl TAP - 1\ subGroups view=MinusSignal cellType=t1K562 localization=NUCLEUS protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapMinusRawRep1\ type bigWig 1.000000 2509548.000000\ wgEncodeUwRepliSeqMcf7S2PctSignalRep1 MCF-7 S2 1 bigWig 1.000000 100.000000 MCF-7 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 63 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel MCF-7 S2 1\ subGroups view=v1PctSignal cellType=t2MCF7 phase=p3S2 rep=rep1\ track wgEncodeUwRepliSeqMcf7S2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeUwDnaseMcf7PkRep1 MCF7 Pk 1 narrowPeak MCF-7 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 63 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel MCF7 Pk 1\ subGroups view=Peaks cellType=t2MCF7 rep=rep1 treatment=None\ track wgEncodeUwDnaseMcf7PkRep1\ type narrowPeak\ wgEncodeHaibGenotypeMyometrRegionsRep1 Myometr 1 bed 9 + Myometr Copy number variants Replicate 1 from ENCODE/HAIB 0 63 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Myometr Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel Myometr 1\ subGroups cellType=t3MYOMETR obtainedBy=Duke treatment=None rep=rep1\ track wgEncodeHaibGenotypeMyometrRegionsRep1\ type bed 9 +\ wgEncodeHaibRnaSeqPfsk1RawRep2 PFSK-1 2 bigWig 0.178471 1536.329956 PFSK-1 RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 63 0 0 0 127 127 127 0 0 0 expression 0 longLabel PFSK-1 RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel PFSK-1 2\ subGroups view=RawSignal cellType=t3PFSK1 treatment=zNONE rep=rep2\ track wgEncodeHaibRnaSeqPfsk1RawRep2\ type bigWig 0.178471 1536.329956\ wgEncodeHaibMethyl450U87SitesRep1 U87 bed 9 U87 Methylation 450K Bead Array from ENCODE/HAIB 1 63 0 0 0 127 127 127 0 0 0 regulation 1 longLabel U87 Methylation 450K Bead Array from ENCODE/HAIB\ parent wgEncodeHaibMethyl450 off\ shortLabel U87\ subGroups cellType=t3U87 obtainedBy=HAIB treatment=zNONE\ track wgEncodeHaibMethyl450U87SitesRep1\ type bed 9\ wgEncodeUwTfbsAg04450CtcfStdPkRep2 AG50 CTCF Pk 2 narrowPeak AG04450 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 64 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel AG50 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3AG04450 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAg04450CtcfStdPkRep2\ type narrowPeak\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_ctss_rev AorticSmsToIL1b_00hr30minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_reverse 0 64 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep1%20%28LK37%29.CNhs13351.12654-134H8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12654-134H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_tpm_rev AorticSmsToIL1b_00hr30minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_reverse 1 64 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep1%20%28LK37%29.CNhs13351.12654-134H8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12654-134H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF449NOT B_cell CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in B_cell from ENCODE 3 (ENCFF449NOT) 1 64 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in B_cell from ENCODE 3 (ENCFF449NOT)\ parent encTfChipPk off\ shortLabel B_cell CTCF\ subGroups cellType=B_cell factor=CTCF\ track encTfChipPkENCFF449NOT\ pgNA18555indel CHB NA18555 indel pgSnp CHB NA18555 indel (Complete Genomics) 0 64 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CHB NA18555 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CHB NA18555 indel\ subGroups view=C_CG id=CC_div_GS18555 type=Indel\ track pgNA18555indel\ wgEncodeDukeAffyExonFibropag20443SimpleSignalRep2 FibroP_AG20443 2 bigBed 6 + FibroP (AG20443) Exon array Signal Rep 2 from ENCODE/Duke 0 64 0 0 0 127 127 127 1 0 0 expression 1 longLabel FibroP (AG20443) Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel FibroP_AG20443 2\ subGroups cellType=t3FIBROPAG20443 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonFibropag20443SimpleSignalRep2\ type bigBed 6 +\ wgEncodeAwgTfbsSydhGm12878Rfx5200401194IggmusUniPk GM12878 RFX5 narrowPeak GM12878 TFBS Uniform Peaks of RFX5_(200-401-194) from ENCODE/Stanford/Analysis 1 64 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of RFX5_(200-401-194) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 RFX5\ subGroups tier=a10 cellType=a10GM12878 factor=RFX5 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Rfx5200401194IggmusUniPk\ wgEncodeOpenChromFaireGm19239Pk GM19239 FAIRE Pk narrowPeak GM19239 FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 64 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM19239 FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel GM19239 FAIRE Pk\ subGroups view=Peaks cellType=t3GM19239 treatment=AANONE\ track wgEncodeOpenChromFaireGm19239Pk\ type narrowPeak\ wgEncodeHaibTfbsGm12878Mef2aPcr1xRawRep1 GM78 MEF2A PCR1 1 bigWig 0.357467 789.643982 GM12878 MEF2A PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 64 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 MEF2A PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 MEF2A PCR1 1\ subGroups view=RawSignal factor=MEF2A cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Mef2aPcr1xRawRep1\ type bigWig 0.357467 789.643982\ wgEncodeSydhTfbsGm12878Pol2s2IggmusSig GM78 PolS IgM bigWig 1.000000 5123.000000 GM12878 Pol2 S2 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 64 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Pol2 S2 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 PolS IgM\ subGroups view=Signal factor=POL2S2 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Pol2s2IggmusSig\ type bigWig 1.000000 5123.000000\ wgEncodeBroadHistoneH1hescJmjd2aa300861a1Pk H1-hESC JMJD2A broadPeak H1-hESC JMJD2A (A300-861A-1) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 64 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC JMJD2A (A300-861A-1) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC JMJD2A\ subGroups view=Peaks factor=JMJD2AA300861A1 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescJmjd2aa300861a1Pk\ type broadPeak\ wgEncodeCshlLongRnaSeqH1hescCellLongnonpolyaPlusRawSigRep2 H1hSC cel pA- + 2 bigWig 1.000000 745615.000000 H1-hESC whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 64 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel H1hSC cel pA- + 2\ subGroups view=PlusSignal cellType=t1H1HESC localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescCellLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 745615.000000\ wgEncodeUwDgfHaeRaw HAEpiC Raw bigWig 1.000000 110519.000000 HAEpiC DNaseI DGF Raw Signal from ENCODE/UW 0 64 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HAEpiC DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HAEpiC Raw\ subGroups view=zRaw cellType=t3HAEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHaeRaw\ type bigWig 1.000000 110519.000000\ wgEncodeHaibMethylRrbsHcfUwSitesRep2 HCF 2 bed 9 + HCF Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 64 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCF Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HCF 2\ subGroups cellType=t3HCF obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHcfUwSitesRep2\ type bed 9 +\ wgEncodeUwAffyExonArrayHcfaaSimpleSignalRep2 HCFaa 2 broadPeak HCFaa Exon array Signal Rep 2 from ENCODE/UW 0 64 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCFaa Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HCFaa 2\ subGroups cellType=t3HCFAA rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHcfaaSimpleSignalRep2\ type broadPeak\ wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UMinusRawRep2V4 HeLa 1x75D - 2 bigWig -31520.000000 -0.025000 HeLa-S3 single read RNA-seq Minus Signal Rep 2 from ENCODE/Caltech 2 64 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 single read RNA-seq Minus Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewMinusSignal off\ shortLabel HeLa 1x75D - 2\ subGroups view=MinusSignal cellType=t2HELAS3 readType=r1x75D insertLength=ilNa rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UMinusRawRep2V4\ type bigWig -31520.000000 -0.025000\ wgEncodeGisRnaPetHelas3CytosolPapPlusRawRep1 HeLa cyto pA+ + 1 bigWig 1.000000 830046.000000 HeLa-S3 cytosol polyA+ clone-free RNA PET Plus Signal Rep 1 from ENCODE/GIS 2 64 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ clone-free RNA PET Plus Signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel HeLa cyto pA+ + 1\ subGroups view=v2PlusRawSignal cellType=bHELAS3 cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHelas3CytosolPapPlusRawRep1\ type bigWig 1.000000 830046.000000\ wgEncodeUwHistoneHelas3H3k27me3StdPkRep1 HeLa H3K27M3 Pk 1 narrowPeak HeLa-S3 H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 64 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HeLa H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t2HELAS3 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k27me3StdPkRep1\ type narrowPeak\ wgEncodeAwgDnaseUwHmvecdlyneoUniPk HMVEC-dLy-N DNase narrowPeak HMVEC-dLy-Neo DNaseI HS Uniform Peaks from ENCODE/Analysis 1 64 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMVEC-dLy-Neo DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HMVEC-dLy-N DNase\ subGroups tier=a30 cellType=HMVEC-dLy-Neo\ track wgEncodeAwgDnaseUwHmvecdlyneoUniPk\ wgEncodeOpenChromChipHuvecPol2Sig HUVEC Pol2 DS bigWig 0.000000 10.084000 HUVEC Pol2 TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 64 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Pol2 TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel HUVEC Pol2 DS\ subGroups treatment=AANONE view=SIG factor=POL2 cellType=t2HUVEC\ track wgEncodeOpenChromChipHuvecPol2Sig\ type bigWig 0.000000 10.084000\ wgEncodeRikenCageK562CytosolPapMinusSignalRep1 K562 cyto pA+ - 1 bigWig 0.040000 13557.019531 K562 cytosol polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 64 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal on\ shortLabel K562 cyto pA+ - 1\ subGroups view=MinusRawSignal cellType=t1K562 localization=cytosol rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageK562CytosolPapMinusSignalRep1\ type bigWig 0.040000 13557.019531\ wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapMinusRawRep2 K562 nucl TAP - 2 bigWig 1.000000 2051665.000000 K562 TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 64 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel K562 nucl TAP - 2\ subGroups view=MinusSignal cellType=t1K562 localization=NUCLEUS protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapMinusRawRep2\ type bigWig 1.000000 2051665.000000\ wgEncodeUwRepliSeqMcf7S3PctSignalRep1 MCF-7 S3 1 bigWig 1.000000 100.000000 MCF-7 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 64 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel MCF-7 S3 1\ subGroups view=v1PctSignal cellType=t2MCF7 phase=p4S3 rep=rep1\ track wgEncodeUwRepliSeqMcf7S3PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeUwDnaseMcf7Est100nm1hRawRep1 MCF7 Est1h Sg 1 bigWig 1.000000 88562.000000 MCF-7 Estradiol 100 nM 1 hr DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 64 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Estradiol 100 nM 1 hr DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel MCF7 Est1h Sg 1\ subGroups view=zRSig cellType=t2MCF7 treatment=EST100NM1H rep=rep1\ track wgEncodeUwDnaseMcf7Est100nm1hRawRep1\ type bigWig 1.000000 88562.000000\ wgEncodeHaibGenotypeNb4RegionsRep1 NB4 1 bed 9 + NB4 Copy number variants Replicate 1 from ENCODE/HAIB 0 64 0 0 0 127 127 127 0 0 0 varRep 1 longLabel NB4 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel NB4 1\ subGroups cellType=t3NB4 obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeNb4RegionsRep1\ type bed 9 +\ wgEncodeHaibRnaSeqPfsk1AlnRep2 PFSK-1 2 bam PFSK-1 RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 64 0 0 0 127 127 127 0 0 0 expression 1 longLabel PFSK-1 RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel PFSK-1 2\ subGroups view=Alignments cellType=t3PFSK1 treatment=zNONE rep=rep2\ track wgEncodeHaibRnaSeqPfsk1AlnRep2\ type bam\ wgEncodeOpenChromDnaseSknshPk SK-N-SH Pk narrowPeak SK-N-SH DNaseI HS Peaks from ENCODE/Duke 3 64 0 0 0 127 127 127 1 0 0 regulation 1 longLabel SK-N-SH DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel SK-N-SH Pk\ subGroups view=Peaks cellType=t2SKNSH treatment=zNONE\ track wgEncodeOpenChromDnaseSknshPk\ type narrowPeak\ wgEncodeUwTfbsAg04450CtcfStdRawRep2 AG50 CTCF Sg 2 bigWig 1.000000 10438.000000 AG04450 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 65 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04450 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AG50 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3AG04450 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAg04450CtcfStdRawRep2\ type bigWig 1.000000 10438.000000\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_ctss_fwd AorticSmsToIL1b_00hr30minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_forward 0 65 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep2%20%28LK38%29.CNhs13371.12752-136A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12752-136A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_tpm_fwd AorticSmsToIL1b_00hr30minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_forward 1 65 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep2%20%28LK38%29.CNhs13371.12752-136A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12752-136A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF658MKE C4-2B CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in C4-2B from ENCODE 3 (ENCFF658MKE) 1 65 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in C4-2B from ENCODE 3 (ENCFF658MKE)\ parent encTfChipPk off\ shortLabel C4-2B CTCF\ subGroups cellType=C4-2B factor=CTCF\ track encTfChipPkENCFF658MKE\ pgNA18558 CHB NA18558 pgSnp CHB NA18558 (Complete Genomics) 0 65 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CHB NA18558 (Complete Genomics)\ parent pgSnpCg\ shortLabel CHB NA18558\ subGroups view=C_CG id=CC_div_GS18558 type=SNP\ track pgNA18558\ wgEncodeDukeAffyExonFibropag20443SimpleSignalRep3 FibroP_AG20443 3 bigBed 6 + FibroP (AG20443) Exon array Signal Rep 3 from ENCODE/Duke 0 65 0 0 0 127 127 127 1 0 0 expression 1 longLabel FibroP (AG20443) Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel FibroP_AG20443 3\ subGroups cellType=t3FIBROPAG20443 treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonFibropag20443SimpleSignalRep3\ type bigBed 6 +\ wgEncodeAwgTfbsHaibGm12878Runx3sc101553V0422111UniPk GM12878 RUNX3 narrowPeak GM12878 TFBS Uniform Peaks of RUNX3_(SC-101553) from ENCODE/HudsonAlpha/Analysis 1 65 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of RUNX3_(SC-101553) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 RUNX3\ subGroups tier=a10 cellType=a10GM12878 factor=RUNX3 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Runx3sc101553V0422111UniPk\ wgEncodeOpenChromFaireGm19239Sig GM19239 FAIRE DS bigWig 0.000000 1.023000 GM19239 FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 65 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM19239 FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel GM19239 FAIRE DS\ subGroups view=SIG cellType=t3GM19239 treatment=AANONE\ track wgEncodeOpenChromFaireGm19239Sig\ type bigWig 0.000000 1.023000\ wgEncodeHaibTfbsGm12878Mef2aPcr1xPkRep2 GM78 MEF2A PCR1 2 broadPeak GM12878 MEF2A PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 65 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 MEF2A PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 MEF2A PCR1 2\ subGroups view=Peaks factor=MEF2A cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Mef2aPcr1xPkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12878Pol3StdPk GM78 Pol3 Std narrowPeak GM12878 POL3 Standard ChIP-seq Peaks from ENCODE/SYDH 3 65 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 POL3 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 Pol3 Std\ subGroups view=Peaks factor=POL3 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Pol3StdPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescJmjd2aa300861a1Sig H1-hESC JMJD2A bigWig 0.040000 394.200012 H1-hESC JMJD2A (A300-861A-1) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 65 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC JMJD2A (A300-861A-1) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC JMJD2A\ subGroups view=Signal factor=JMJD2AA300861A1 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescJmjd2aa300861a1Sig\ type bigWig 0.040000 394.200012\ wgEncodeCshlLongRnaSeqH1hescCellPapAlnRep1 H1hSC cel pA+ A 1 bam H1-hESC whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 65 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel H1hSC cel pA+ A 1\ subGroups view=Alignments cellType=t1H1HESC localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqH1hescCellPapAlnRep1\ type bam\ wgEncodeUwDgfHcfHotspots HCF Hot broadPeak HCF DNaseI DGF Hotspots from ENCODE/UW 0 65 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCF DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HCF Hot\ subGroups view=Hotspots cellType=t3HCF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHcfHotspots\ type broadPeak\ wgEncodeUwAffyExonArrayHcmSimpleSignalRep1 HCM 1 broadPeak HCM Exon array Signal Rep 1 from ENCODE/UW 0 65 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCM Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HCM 1\ subGroups cellType=t3HCM rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHcmSimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethylRrbsHcmUwSitesRep1 HCM 1 bed 9 + HCM Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 65 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HCM 1\ subGroups cellType=t3HCM obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHcmUwSitesRep1\ type bed 9 +\ wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UPlusRawRep1V4 HeLa 1x75D + 1 bigWig 0.021200 51041.000000 HeLa-S3 single read RNA-seq Plus Signal Rep 1 from ENCODE/Caltech 2 65 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 single read RNA-seq Plus Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewPlusSignal off\ shortLabel HeLa 1x75D + 1\ subGroups view=PlusSignal cellType=t2HELAS3 readType=r1x75D insertLength=ilNa rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UPlusRawRep1V4\ type bigWig 0.021200 51041.000000\ wgEncodeGisRnaPetHelas3CytosolPapAlnRep1 HeLa cyto pA+ A 1 bam HeLa-S3 cytosol polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS 0 65 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel HeLa cyto pA+ A 1\ subGroups view=v3Alignments cellType=bHELAS3 cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHelas3CytosolPapAlnRep1\ type bam\ wgEncodeUwHistoneHelas3H3k27me3StdRawRep1 HeLa H3K27M3 Sg 1 bigWig 1.000000 6433.000000 HeLa-S3 H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 65 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HeLa H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t2HELAS3 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k27me3StdRawRep1\ type bigWig 1.000000 6433.000000\ wgEncodeAwgDnaseUwHmvecdneoUniPk HMVEC-dNeo DNase narrowPeak HMVEC-dNeo DNaseI HS Uniform Peaks from ENCODE/Analysis 1 65 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMVEC-dNeo DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HMVEC-dNeo DNase\ subGroups tier=a30 cellType=HMVEC-dNeo\ track wgEncodeAwgDnaseUwHmvecdneoUniPk\ wgEncodeOpenChromChipHuvecPol2BaseOverlapSignal HUVEC Pol2 OS bigWig 0.000000 3853.000000 HUVEC Pol2 TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 65 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Pol2 TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel HUVEC Pol2 OS\ subGroups treatment=AANONE view=SIGBO factor=POL2 cellType=t2HUVEC\ track wgEncodeOpenChromChipHuvecPol2BaseOverlapSignal\ type bigWig 0.000000 3853.000000\ wgEncodeRikenCageK562CytosolPapMinusSignalRep2 K562 cyto pA+ - 2 bigWig 0.060000 18765.929688 K562 cytosol polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 65 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel K562 cyto pA+ - 2\ subGroups view=MinusRawSignal cellType=t1K562 localization=cytosol rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageK562CytosolPapMinusSignalRep2\ type bigWig 0.060000 18765.929688\ wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapPlusRawRep1 K562 nucl TAP + 1 bigWig 1.000000 842350.000000 K562 TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 65 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel K562 nucl TAP + 1\ subGroups view=PlusSignal cellType=t1K562 localization=NUCLEUS protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapPlusRawRep1\ type bigWig 1.000000 842350.000000\ wgEncodeUwRepliSeqMcf7S4PctSignalRep1 MCF-7 S4 1 bigWig 1.000000 100.000000 MCF-7 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 65 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel MCF-7 S4 1\ subGroups view=v1PctSignal cellType=t2MCF7 phase=p5S4 rep=rep1\ track wgEncodeUwRepliSeqMcf7S4PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeUwDnaseMcf7Estctrl0hRawRep1 MCF7 EstCtrl Sg 1 bigWig 1.000000 60405.000000 MCF-7 Estradiol Control 0 hr DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 65 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Estradiol Control 0 hr DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel MCF7 EstCtrl Sg 1\ subGroups view=zRSig cellType=t2MCF7 treatment=ESTCTRL0H rep=rep1\ track wgEncodeUwDnaseMcf7Estctrl0hRawRep1\ type bigWig 1.000000 60405.000000\ wgEncodeHaibGenotypeNb4RegionsRep2 NB4 2 bed 9 + NB4 Copy number variants Replicate 2 from ENCODE/HAIB 0 65 0 0 0 127 127 127 0 0 0 varRep 1 longLabel NB4 Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel NB4 2\ subGroups cellType=t3NB4 obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeNb4RegionsRep2\ type bed 9 +\ wgEncodeOpenChromDnaseSknshSig SK-N-SH DS bigWig 0.000000 2.501600 SK-N-SH DNaseI HS Density Signal from ENCODE/Duke 2 65 0 0 0 127 127 127 1 0 0 regulation 0 longLabel SK-N-SH DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel SK-N-SH DS\ subGroups view=SIG cellType=t2SKNSH treatment=zNONE\ track wgEncodeOpenChromDnaseSknshSig\ type bigWig 0.000000 2.501600\ wgEncodeHaibRnaSeqT47dBpa14hRawRep1 T-47D BPA 1 bigWig 0.149111 676.367004 T-47D BPA 4 hr 100 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 65 0 0 0 127 127 127 0 0 0 expression 0 longLabel T-47D BPA 4 hr 100 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel T-47D BPA 1\ subGroups view=RawSignal cellType=t3T47D treatment=BPA14h rep=rep1\ track wgEncodeHaibRnaSeqT47dBpa14hRawRep1\ type bigWig 0.149111 676.367004\ wgEncodeUwTfbsAg04450InputStdRawRep1 AG50 In Sg 1 bigWig 1.000000 17581.000000 AG04450 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 66 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04450 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AG50 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3AG04450 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg04450InputStdRawRep1\ type bigWig 1.000000 17581.000000\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_ctss_rev AorticSmsToIL1b_00hr30minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_reverse 0 66 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep2%20%28LK38%29.CNhs13371.12752-136A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12752-136A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_tpm_rev AorticSmsToIL1b_00hr30minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_reverse 1 66 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep2%20%28LK38%29.CNhs13371.12752-136A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12752-136A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF842WEF C4-2B ZFX narrowPeak Transcription Factor ChIP-seq Peaks of ZFX in C4-2B from ENCODE 3 (ENCFF842WEF) 1 66 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZFX in C4-2B from ENCODE 3 (ENCFF842WEF)\ parent encTfChipPk off\ shortLabel C4-2B ZFX\ subGroups cellType=C4-2B factor=ZFX\ track encTfChipPkENCFF842WEF\ pgNA18558indel CHB NA18558 indel pgSnp CHB NA18558 indel (Complete Genomics) 0 66 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CHB NA18558 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CHB NA18558 indel\ subGroups view=C_CG id=CC_div_GS18558 type=Indel\ track pgNA18558indel\ wgEncodeDukeAffyExonGlioblaSimpleSignalRep1V2 Gliobla 1 bigBed 6 + Gliobla Exon array Signal Rep 1 from ENCODE/Duke 0 66 0 0 0 127 127 127 1 0 0 expression 1 longLabel Gliobla Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Gliobla 1\ subGroups cellType=t3GLIOBLA treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonGlioblaSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeAwgTfbsHaibGm12878RxraPcr1xUniPk GM12878 RXRA narrowPeak GM12878 TFBS Uniform Peaks of RXRA from ENCODE/HudsonAlpha/Analysis 1 66 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of RXRA from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 RXRA\ subGroups tier=a10 cellType=a10GM12878 factor=RXRA lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878RxraPcr1xUniPk\ wgEncodeOpenChromFaireGm19239BaseOverlapSignal GM19239 FAIRE OS bigWig 0.000000 1562.000000 GM19239 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 66 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM19239 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel GM19239 FAIRE OS\ subGroups view=SIGBO cellType=t3GM19239 treatment=AANONE\ track wgEncodeOpenChromFaireGm19239BaseOverlapSignal\ type bigWig 0.000000 1562.000000\ wgEncodeHaibTfbsGm12878Mef2aPcr1xRawRep2 GM78 MEF2A PCR1 2 bigWig 0.208574 219.733002 GM12878 MEF2A PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 66 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 MEF2A PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 MEF2A PCR1 2\ subGroups view=RawSignal factor=MEF2A cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Mef2aPcr1xRawRep2\ type bigWig 0.208574 219.733002\ wgEncodeSydhTfbsGm12878Pol3StdSig GM78 Pol3 Std bigWig 0.000000 11643.400391 GM12878 POL3 Standard ChIP-seq Signal from ENCODE/SYDH 2 66 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 POL3 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 Pol3 Std\ subGroups view=Signal factor=POL3 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Pol3StdSig\ type bigWig 0.000000 11643.400391\ wgEncodeBroadHistoneH1hescP300kat3bPk H1-hESC P300 broadPeak H1-hESC P300 KAT3B Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 66 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC P300 KAT3B Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC P300\ subGroups view=Peaks factor=P300KAT3B cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescP300kat3bPk\ type broadPeak\ wgEncodeCshlLongRnaSeqH1hescCellPapAlnRep2 H1hSC cel pA+ A 2 bam H1-hESC whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 66 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel H1hSC cel pA+ A 2\ subGroups view=Alignments cellType=t1H1HESC localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescCellPapAlnRep2\ type bam\ wgEncodeUwDgfHcfPk HCF Pk narrowPeak HCF DNaseI DGF Peaks from ENCODE/UW 0 66 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCF DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HCF Pk\ subGroups view=Peaks cellType=t3HCF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHcfPk\ type narrowPeak\ wgEncodeUwAffyExonArrayHcmSimpleSignalRep2 HCM 2 broadPeak HCM Exon array Signal Rep 2 from ENCODE/UW 0 66 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCM Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HCM 2\ subGroups cellType=t3HCM rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHcmSimpleSignalRep2\ type broadPeak\ wgEncodeHaibMethylRrbsHcmUwSitesRep2 HCM 2 bed 9 + HCM Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 66 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HCM 2\ subGroups cellType=t3HCM obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHcmUwSitesRep2\ type bed 9 +\ wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UPlusRawRep2V4 HeLa 1x75D + 2 bigWig 0.025000 42784.000000 HeLa-S3 single read RNA-seq Plus Signal Rep 2 from ENCODE/Caltech 2 66 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 single read RNA-seq Plus Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewPlusSignal off\ shortLabel HeLa 1x75D + 2\ subGroups view=PlusSignal cellType=t2HELAS3 readType=r1x75D insertLength=ilNa rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UPlusRawRep2V4\ type bigWig 0.025000 42784.000000\ wgEncodeUwHistoneHelas3H3k27me3StdHotspotsRep2 HeLa H3K27M3 Ht 2 broadPeak HeLa-S3 H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 66 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HeLa H3K27M3 Ht 2\ subGroups view=Hot factor=H3K27ME3 cellType=t2HELAS3 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k27me3StdHotspotsRep2\ type broadPeak\ wgEncodeGisRnaPetHelas3NucleusPapClustersRep1V2 HeLa nucl pA+ 1 bed 6 + HeLa-S3 nucleus polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS 2 66 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel HeLa nucl pA+ 1\ subGroups view=v1Clusters cellType=bHELAS3 cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHelas3NucleusPapClustersRep1V2\ type bed 6 +\ wgEncodeAwgDnaseUwHnpcepicUniPk HNPCEpiC DNase narrowPeak HNPCEpiC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 66 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HNPCEpiC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HNPCEpiC DNase\ subGroups tier=a30 cellType=HNPCEpiC\ track wgEncodeAwgDnaseUwHnpcepicUniPk\ wgEncodeOpenChromChipHuvecInputSig HUVEC Input DS bigWig 0.000000 4.696200 HUVEC Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 66 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel HUVEC Input DS\ subGroups treatment=AANONE view=SIG factor=zCTRL cellType=t2HUVEC\ track wgEncodeOpenChromChipHuvecInputSig\ type bigWig 0.000000 4.696200\ wgEncodeRikenCageK562CytosolPapAlnRep1 K562 cyto pA+ A 1 bam K562 cytosol polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 66 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel K562 cyto pA+ A 1\ subGroups view=Alignments cellType=t1K562 localization=cytosol rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageK562CytosolPapAlnRep1\ type bam\ wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapPlusRawRep2 K562 nucl TAP + 2 bigWig 1.000000 697712.000000 K562 TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 66 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel K562 nucl TAP + 2\ subGroups view=PlusSignal cellType=t1K562 localization=NUCLEUS protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapPlusRawRep2\ type bigWig 1.000000 697712.000000\ wgEncodeUwRepliSeqMcf7G2PctSignalRep1 MCF-7 G2 1 bigWig 1.000000 100.000000 MCF-7 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 66 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel MCF-7 G2 1\ subGroups view=v1PctSignal cellType=t2MCF7 phase=p6G2 rep=rep1\ track wgEncodeUwRepliSeqMcf7G2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeUwDnaseMcf7RawRep1 MCF7 Sg 1 bigWig 1.000000 33810.000000 MCF-7 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 66 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel MCF7 Sg 1\ subGroups view=zRSig cellType=t2MCF7 rep=rep1 treatment=None\ track wgEncodeUwDnaseMcf7RawRep1\ type bigWig 1.000000 33810.000000\ wgEncodeHaibGenotypeNhaDukeRegionsRep1 NH-A Duke 1 bed 9 + NH-A (Duke) Copy number variants Replicate 1 from ENCODE/HAIB 0 66 0 0 0 127 127 127 0 0 0 varRep 1 longLabel NH-A (Duke) Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel NH-A Duke 1\ subGroups cellType=t3NHAd obtainedBy=Duke treatment=None rep=rep1\ track wgEncodeHaibGenotypeNhaDukeRegionsRep1\ type bed 9 +\ wgEncodeOpenChromDnaseSknshBaseOverlapSignal SK-N-SH OS bigWig 0.000000 231.000000 SK-N-SH DNaseI HS Overlap Signal from ENCODE/Duke 2 66 0 0 0 127 127 127 1 0 0 regulation 0 longLabel SK-N-SH DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel SK-N-SH OS\ subGroups view=SIGBO cellType=t2SKNSH treatment=zNONE\ track wgEncodeOpenChromDnaseSknshBaseOverlapSignal\ type bigWig 0.000000 231.000000\ wgEncodeHaibRnaSeqT47dBpa14hAlnRep1 T-47D BPA 1 bam T-47D BPA 4 hr 100 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 66 0 0 0 127 127 127 0 0 0 expression 1 longLabel T-47D BPA 4 hr 100 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel T-47D BPA 1\ subGroups view=Alignments cellType=t3T47D treatment=BPA14h rep=rep1\ track wgEncodeHaibRnaSeqT47dBpa14hAlnRep1\ type bam\ wgEncodeOpenChromDnase8988tPk 8988T Pk narrowPeak 8988T DNaseI HS Peaks from ENCODE/Duke 3 67 0 0 0 127 127 127 1 0 0 regulation 1 longLabel 8988T DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel 8988T Pk\ subGroups view=Peaks cellType=t3A8988T treatment=zNONE\ track wgEncodeOpenChromDnase8988tPk\ type narrowPeak\ wgEncodeUwTfbsAg09309CtcfStdHotspotsRep1 AG09 CTCF Ht 1 broadPeak AG09309 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 67 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09309 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel AG09 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3AG09309 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg09309CtcfStdHotspotsRep1\ type broadPeak\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_ctss_fwd AorticSmsToIL1b_00hr30minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_forward 0 67 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep3%20%28LK39%29.CNhs13579.12850-137C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12850-137C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_tpm_fwd AorticSmsToIL1b_00hr30minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_forward 1 67 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep3%20%28LK39%29.CNhs13579.12850-137C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12850-137C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF437LHG CD14+monocyte CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in CD14-positive_monocyte from ENCODE 3 (ENCFF437LHG) 1 67 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in CD14-positive_monocyte from ENCODE 3 (ENCFF437LHG)\ parent encTfChipPk off\ shortLabel CD14+monocyte CTCF\ subGroups cellType=CD14-positive_monocyte factor=CTCF\ track encTfChipPkENCFF437LHG\ pgNA20845 GIH NA20845 pgSnp GIH NA20845 (Complete Genomics) 0 67 0 0 0 127 127 127 0 0 0 varRep 1 longLabel GIH NA20845 (Complete Genomics)\ parent pgSnpCg\ shortLabel GIH NA20845\ subGroups view=C_CG id=CD_div_GS20845 type=SNP\ track pgNA20845\ wgEncodeDukeAffyExonGlioblaSimpleSignalRep2V2 Gliobla 2 bigBed 6 + Gliobla Exon array Signal Rep 2 from ENCODE/Duke 0 67 0 0 0 127 127 127 1 0 0 expression 1 longLabel Gliobla Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Gliobla 2\ subGroups cellType=t3GLIOBLA treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonGlioblaSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeAwgTfbsSydhGm12878Sin3anb6001263IggmusUniPk GM12878 SIN3A narrowPeak GM12878 TFBS Uniform Peaks of SIN3A_(NB600-1263) from ENCODE/Stanford/Analysis 1 67 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of SIN3A_(NB600-1263) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 SIN3A\ subGroups tier=a10 cellType=a10GM12878 factor=SIN3A lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Sin3anb6001263IggmusUniPk\ wgEncodeHaibTfbsGm12878Mef2csc13268V0416101PkRep1 GM78 MEFC V101 1 broadPeak GM12878 MEF2C v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 67 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 MEF2C v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 MEFC V101 1\ subGroups view=Peaks factor=MEF2CSC13268 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Mef2csc13268V0416101PkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878Rad21IggrabPk GM78 Rad2 IgR narrowPeak GM12878 Rad21 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 67 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Rad21 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks on\ shortLabel GM78 Rad2 IgR\ subGroups view=Peaks factor=RAD21 cellType=t1GM12878 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsGm12878Rad21IggrabPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescP300kat3bSig H1-hESC P300 bigWig 0.040000 384.000000 H1-hESC P300 KAT3B Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 67 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC P300 KAT3B Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC P300\ subGroups view=Signal factor=P300KAT3B cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescP300kat3bSig\ type bigWig 0.040000 384.000000\ wgEncodeCshlLongRnaSeqH1hescCellPapContigs H1hSC cel pA+ C bed 6 + H1-hESC whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 67 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel H1hSC cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1H1HESC localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqH1hescCellPapContigs\ type bed 6 +\ wgEncodeUwDgfHcfSig HCF Sig bigWig 1.000000 110210.000000 HCF DNaseI DGF Per-base Signal from ENCODE/UW 2 67 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCF DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HCF Sig\ subGroups view=Signal cellType=t3HCF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHcfSig\ type bigWig 1.000000 110210.000000\ wgEncodeUwAffyExonArrayHconfSimpleSignalRep1 HConF 1 broadPeak HConF Exon array Signal Rep 1 from ENCODE/UW 0 67 0 0 0 127 127 127 0 0 0 expression 1 longLabel HConF Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HConF 1\ subGroups cellType=t3HCONF rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHconfSimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethylRrbsHcpeUwSitesRep1 HCPEpiC 1 bed 9 + HCPEpiC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 67 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpiC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HCPEpiC 1\ subGroups cellType=t3HCPEPIC obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHcpeUwSitesRep1\ type bed 9 +\ wgEncodeCaltechRnaSeqHelas3R1x75dSplicesRep1V2 HeLa 1x75D Sp 1 bam HeLa-S3 single read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 67 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 single read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel HeLa 1x75D Sp 1\ subGroups view=Splices cellType=t2HELAS3 insertLength=ilNa readType=r1x75D rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHelas3R1x75dSplicesRep1V2\ type bam\ wgEncodeUwHistoneHelas3H3k27me3StdPkRep2 HeLa H3K27M3 Pk 2 narrowPeak HeLa-S3 H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 67 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HeLa H3K27M3 Pk 2\ subGroups view=Peaks factor=H3K27ME3 cellType=t2HELAS3 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k27me3StdPkRep2\ type narrowPeak\ wgEncodeGisRnaPetHelas3NucleusPapMinusRawRep1V2 HeLa nucl pA+ - 1 bigWig 1.000000 1236460.000000 HeLa-S3 nucleus polyA+ clone-free RNA PET Minus Signal Rep 1 from ENCODE/GIS 2 67 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ clone-free RNA PET Minus Signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel HeLa nucl pA+ - 1\ subGroups view=v2MinusRawSignal cellType=bHELAS3 cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHelas3NucleusPapMinusRawRep1V2\ type bigWig 1.000000 1236460.000000\ wgEncodeAwgDnaseUwHpaecUniPk HPAEC DNase narrowPeak HPAEC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 67 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HPAEC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HPAEC DNase\ subGroups tier=a30 cellType=HPAEC\ track wgEncodeAwgDnaseUwHpaecUniPk\ wgEncodeOpenChromFaireHtr8Pk HTR8svn FAIRE Pk narrowPeak HTR8svn FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 67 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HTR8svn FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel HTR8svn FAIRE Pk\ subGroups treatment=AANONE view=Peaks cellType=t3HTR8SVN\ track wgEncodeOpenChromFaireHtr8Pk\ type narrowPeak\ wgEncodeRikenCageK562CytosolPapAlnRep2 K562 cyto pA+ A 2 bam K562 cytosol polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 67 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel K562 cyto pA+ A 2\ subGroups view=Alignments cellType=t1K562 localization=cytosol rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageK562CytosolPapAlnRep2\ type bam\ wgEncodeCshlShortRnaSeqK562PolysomeShortMinusRaw K562 psom TAP - 1 bigWig 1.000000 192904.000000 K562 TAP-only polysome small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 67 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only polysome small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel K562 psom TAP - 1\ subGroups view=MinusSignal cellType=t1K562 localization=POLYSOME protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqK562PolysomeShortMinusRaw\ type bigWig 1.000000 192904.000000\ wgEncodeOpenChromChipMcf7CmycEstroPkRep1 MCF-7 est cMyc Pk narrowPeak MCF-7 estrogen cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 67 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 estrogen cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel MCF-7 est cMyc Pk\ subGroups view=Peaks factor=CMYC cellType=t2MCF7 treatment=ESTRO\ track wgEncodeOpenChromChipMcf7CmycEstroPkRep1\ type narrowPeak\ wgEncodeUwRepliSeqMcf7PkRep1 MCF-7 Pk 1 bed 9 MCF-7 Repli-seq Peaks Rep 1 from ENCODE/UW 0 67 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 Repli-seq Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPeaks off\ shortLabel MCF-7 Pk 1\ subGroups view=v2Peaks cellType=t2MCF7 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqMcf7PkRep1\ type bed 9\ wgEncodeUwDnaseMcf7Est100nm1hHotspotsRep2 MCF7 Est1h Ht 2 broadPeak MCF-7 Estradiol 100 nM 1 hr DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 67 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 Estradiol 100 nM 1 hr DNaseI HS HotSpots Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel MCF7 Est1h Ht 2\ subGroups view=Hot cellType=t2MCF7 treatment=EST100NM1H rep=rep2\ track wgEncodeUwDnaseMcf7Est100nm1hHotspotsRep2\ type broadPeak\ wgEncodeHaibGenotypeNhaRegionsRep1 NH-A UW 1 bed 9 + NH-A (UW) Copy number variants Replicate 1 from ENCODE/HAIB 0 67 0 0 0 127 127 127 0 0 0 varRep 1 longLabel NH-A (UW) Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel NH-A UW 1\ subGroups cellType=t3NHAu obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeNhaRegionsRep1\ type bed 9 +\ wgEncodeHaibRnaSeqT47dBpa14hRawRep2 T-47D BPA 2 bigWig 0.129285 618.044983 T-47D BPA 4 hr 100 nM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 67 0 0 0 127 127 127 0 0 0 expression 0 longLabel T-47D BPA 4 hr 100 nM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel T-47D BPA 2\ subGroups view=RawSignal cellType=t3T47D treatment=BPA14h rep=rep2\ track wgEncodeHaibRnaSeqT47dBpa14hRawRep2\ type bigWig 0.129285 618.044983\ wgEncodeOpenChromDnase8988tSig 8988T DS bigWig 0.000000 1.842900 8988T DNaseI HS Density Signal from ENCODE/Duke 2 68 0 0 0 127 127 127 1 0 0 regulation 0 longLabel 8988T DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel 8988T DS\ subGroups view=SIG cellType=t3A8988T treatment=zNONE\ track wgEncodeOpenChromDnase8988tSig\ type bigWig 0.000000 1.842900\ wgEncodeUwTfbsAg09309CtcfStdPkRep1 AG09 CTCF Pk 1 narrowPeak AG09309 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 68 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09309 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel AG09 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3AG09309 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg09309CtcfStdPkRep1\ type narrowPeak\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_ctss_rev AorticSmsToIL1b_00hr30minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_reverse 0 68 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep3%20%28LK39%29.CNhs13579.12850-137C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12850-137C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_tpm_rev AorticSmsToIL1b_00hr30minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_reverse 1 68 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep3%20%28LK39%29.CNhs13579.12850-137C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12850-137C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF882YQH Caco-2 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Caco-2 from ENCODE 3 (ENCFF882YQH) 1 68 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Caco-2 from ENCODE 3 (ENCFF882YQH)\ parent encTfChipPk off\ shortLabel Caco-2 CTCF\ subGroups cellType=Caco-2 factor=CTCF\ track encTfChipPkENCFF882YQH\ pgNA20845indel GIH NA20845 indel pgSnp GIH NA20845 indel (Complete Genomics) 0 68 0 0 0 127 127 127 0 0 0 varRep 1 longLabel GIH NA20845 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel GIH NA20845 indel\ subGroups view=C_CG id=CD_div_GS20845 type=Indel\ track pgNA20845indel\ wgEncodeDukeAffyExonGlioblaSimpleSignalRep3V2 Gliobla 3 bigBed 6 + Gliobla Exon array Signal Rep 3 from ENCODE/Duke 0 68 0 0 0 127 127 127 1 0 0 expression 1 longLabel Gliobla Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Gliobla 3\ subGroups cellType=t3GLIOBLA treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonGlioblaSimpleSignalRep3V2\ type bigBed 6 +\ wgEncodeAwgTfbsHaibGm12878Six5Pcr1xUniPk GM12878 SIX5 narrowPeak GM12878 TFBS Uniform Peaks of SIX5 from ENCODE/HudsonAlpha/Analysis 1 68 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of SIX5 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 SIX5\ subGroups tier=a10 cellType=a10GM12878 factor=SIX5 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Six5Pcr1xUniPk\ wgEncodeHaibTfbsGm12878Mef2csc13268V0416101RawRep1 GM78 MEFC V101 1 bigWig 0.370631 137.225998 GM12878 MEF2C v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 68 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 MEF2C v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 MEFC V101 1\ subGroups view=RawSignal factor=MEF2CSC13268 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Mef2csc13268V0416101RawRep1\ type bigWig 0.370631 137.225998\ wgEncodeSydhTfbsGm12878Rad21IggrabSig GM78 Rad2 IgR bigWig 0.000000 7561.200195 GM12878 Rad21 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 68 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Rad21 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal on\ shortLabel GM78 Rad2 IgR\ subGroups view=Signal factor=RAD21 cellType=t1GM12878 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsGm12878Rad21IggrabSig\ type bigWig 0.000000 7561.200195\ wgEncodeBroadHistoneH1hescPhf8a301772aPk H1-hESC PHF8 broadPeak H1-hESC PHF8 (A301-772A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 68 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC PHF8 (A301-772A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC PHF8\ subGroups view=Peaks factor=PHF8A301772A cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescPhf8a301772aPk\ type broadPeak\ wgEncodeCshlLongRnaSeqH1hescCellPapJunctions H1hSC cel pA+ J bed 6 + H1-hESC whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 68 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel H1hSC cel pA+ J\ subGroups view=Junctions cellType=t1H1HESC localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqH1hescCellPapJunctions\ type bed 6 +\ wgEncodeUwDgfHcfRaw HCF Raw bigWig 1.000000 314066.000000 HCF DNaseI DGF Raw Signal from ENCODE/UW 0 68 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCF DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HCF Raw\ subGroups view=zRaw cellType=t3HCF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHcfRaw\ type bigWig 1.000000 314066.000000\ wgEncodeUwAffyExonArrayHconfSimpleSignalRep2 HConF 2 broadPeak HConF Exon array Signal Rep 2 from ENCODE/UW 0 68 0 0 0 127 127 127 0 0 0 expression 1 longLabel HConF Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HConF 2\ subGroups cellType=t3HCONF rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHconfSimpleSignalRep2\ type broadPeak\ wgEncodeHaibMethylRrbsHcpeUwSitesRep2 HCPEpiC 2 bed 9 + HCPEpiC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 68 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpiC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HCPEpiC 2\ subGroups cellType=t3HCPEPIC obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHcpeUwSitesRep2\ type bed 9 +\ wgEncodeCaltechRnaSeqHelas3R1x75dSplicesRep2V2 HeLa 1x75D Sp 2 bam HeLa-S3 single read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 68 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 single read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel HeLa 1x75D Sp 2\ subGroups view=Splices cellType=t2HELAS3 insertLength=ilNa readType=r1x75D rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHelas3R1x75dSplicesRep2V2\ type bam\ wgEncodeUwHistoneHelas3H3k27me3StdRawRep2 HeLa H3K27M3 Sg 2 bigWig 1.000000 7668.000000 HeLa-S3 H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 68 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HeLa H3K27M3 Sg 2\ subGroups view=zRSig factor=H3K27ME3 cellType=t2HELAS3 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k27me3StdRawRep2\ type bigWig 1.000000 7668.000000\ wgEncodeGisRnaPetHelas3NucleusPapPlusRawRep1V2 HeLa nucl pA+ + 1 bigWig 1.000000 2411020.000000 HeLa-S3 nucleus polyA+ clone-free RNA PET Plus Signal Rep 1 from ENCODE/GIS 2 68 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ clone-free RNA PET Plus Signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel HeLa nucl pA+ + 1\ subGroups view=v2PlusRawSignal cellType=bHELAS3 cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHelas3NucleusPapPlusRawRep1V2\ type bigWig 1.000000 2411020.000000\ wgEncodeAwgDnaseUwHpafUniPk HPAF DNase narrowPeak HPAF DNaseI HS Uniform Peaks from ENCODE/Analysis 1 68 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HPAF DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HPAF DNase\ subGroups tier=a30 cellType=HPAF\ track wgEncodeAwgDnaseUwHpafUniPk\ wgEncodeOpenChromFaireHtr8Sig HTR8svn FAIRE DS bigWig 0.000000 0.335400 HTR8svn FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 68 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HTR8svn FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel HTR8svn FAIRE DS\ subGroups treatment=AANONE view=SIG cellType=t3HTR8SVN\ track wgEncodeOpenChromFaireHtr8Sig\ type bigWig 0.000000 0.335400\ wgEncodeRikenCageK562NucleolusTotalTssHmmV3 K562 nlos tot bed 6 K562 nucleolus total CAGE TSS HMM from ENCODE/RIKEN 3 68 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleolus total CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel K562 nlos tot\ subGroups view=TssHmm cellType=t1K562 localization=nucleolus rnaExtract=total rep=rep0 rank=rankP\ track wgEncodeRikenCageK562NucleolusTotalTssHmmV3\ type bed 6\ wgEncodeCshlShortRnaSeqK562PolysomeShortPlusRaw K562 psom TAP + 1 bigWig 1.000000 20832.000000 K562 TAP-only polysome small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 68 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 TAP-only polysome small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel K562 psom TAP + 1\ subGroups view=PlusSignal cellType=t1K562 localization=POLYSOME protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqK562PolysomeShortPlusRaw\ type bigWig 1.000000 20832.000000\ wgEncodeOpenChromChipMcf7CmycEstroSig MCF-7 est cMyc DS bigWig 0.000000 0.801700 MCF-7 estrogen cMyc TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 68 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 estrogen cMyc TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel MCF-7 est cMyc DS\ subGroups view=SIG factor=CMYC cellType=t2MCF7 treatment=ESTRO\ track wgEncodeOpenChromChipMcf7CmycEstroSig\ type bigWig 0.000000 0.801700\ wgEncodeUwRepliSeqMcf7ValleysRep1 MCF-7 Vly 1 bed 9 MCF-7 Repli-seq Valleys Rep 1 from ENCODE/UW 0 68 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 Repli-seq Valleys Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewValleys off\ shortLabel MCF-7 Vly 1\ subGroups view=v3Valleys cellType=t2MCF7 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqMcf7ValleysRep1\ type bed 9\ wgEncodeUwDnaseMcf7Estctrl0hHotspotsRep2 MCF7 EstCtrl Ht 2 broadPeak MCF-7 Estradiol Control 0 hr DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 68 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 Estradiol Control 0 hr DNaseI HS HotSpots Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel MCF7 EstCtrl Ht 2\ subGroups view=Hot cellType=t2MCF7 treatment=ESTCTRL0H rep=rep2\ track wgEncodeUwDnaseMcf7Estctrl0hHotspotsRep2\ type broadPeak\ wgEncodeHaibGenotypeNhaRegionsRep2 NH-A UW 2 bed 9 + NH-A (UW) Copy number variants Replicate 2 from ENCODE/HAIB 0 68 0 0 0 127 127 127 0 0 0 varRep 1 longLabel NH-A (UW) Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel NH-A UW 2\ subGroups cellType=t3NHAu obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeNhaRegionsRep2\ type bed 9 +\ wgEncodeHaibRnaSeqT47dBpa14hAlnRep2 T-47D BPA 2 bam T-47D BPA 4 hr 100 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 68 0 0 0 127 127 127 0 0 0 expression 1 longLabel T-47D BPA 4 hr 100 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel T-47D BPA 2\ subGroups view=Alignments cellType=t3T47D treatment=BPA14h rep=rep2\ track wgEncodeHaibRnaSeqT47dBpa14hAlnRep2\ type bam\ wgEncodeOpenChromDnase8988tBaseOverlapSignal 8988T OS bigWig 0.000000 286.000000 8988T DNaseI HS Overlap Signal from ENCODE/Duke 2 69 0 0 0 127 127 127 1 0 0 regulation 0 longLabel 8988T DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel 8988T OS\ subGroups view=SIGBO cellType=t3A8988T treatment=zNONE\ track wgEncodeOpenChromDnase8988tBaseOverlapSignal\ type bigWig 0.000000 286.000000\ wgEncodeCshlShortRnaSeqA549CellCiptapContigs A549 cell CIP C bed 6 A549 CIP-TAP whole cell small RNA-seq Contigs from ENCODE/CSHL 2 69 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 CIP-TAP whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel A549 cell CIP C\ subGroups view=Contigs rep=Pooled cellType=t2A549 localization=CELL protocol=CIPTAP rank=none\ track wgEncodeCshlShortRnaSeqA549CellCiptapContigs\ type bed 6\ wgEncodeUwTfbsAg09309CtcfStdRawRep1 AG09 CTCF Sg 1 bigWig 1.000000 8409.000000 AG09309 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 69 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG09309 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AG09 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3AG09309 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg09309CtcfStdRawRep1\ type bigWig 1.000000 8409.000000\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_ctss_fwd AorticSmsToIL1b_00hr45minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_forward 0 69 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep1%20%28LK40%29.CNhs13352.12655-134H9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12655-134H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_tpm_fwd AorticSmsToIL1b_00hr45minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_forward 1 69 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep1%20%28LK40%29.CNhs13352.12655-134H9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12655-134H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF421PBO DOHH2 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in DOHH2 from ENCODE 3 (ENCFF421PBO) 1 69 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in DOHH2 from ENCODE 3 (ENCFF421PBO)\ parent encTfChipPk off\ shortLabel DOHH2 CTCF\ subGroups cellType=DOHH2 factor=CTCF\ track encTfChipPkENCFF421PBO\ pgNA20846 GIH NA20846 pgSnp GIH NA20846 (Complete Genomics) 0 69 0 0 0 127 127 127 0 0 0 varRep 1 longLabel GIH NA20846 (Complete Genomics)\ parent pgSnpCg\ shortLabel GIH NA20846\ subGroups view=C_CG id=CD_div_GS20846 type=SNP\ track pgNA20846\ wgEncodeDukeAffyExonGlioblaSimpleSignalRep4V2 Gliobla 4 bigBed 6 + Gliobla Exon array Signal Rep 4 from ENCODE/Duke 0 69 0 0 0 127 127 127 1 0 0 expression 1 longLabel Gliobla Exon array Signal Rep 4 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Gliobla 4\ subGroups cellType=t3GLIOBLA treatment=zNONE rep=rep4\ track wgEncodeDukeAffyExonGlioblaSimpleSignalRep4V2\ type bigBed 6 +\ wgEncodeAwgTfbsSydhGm12878Smc3ab9263IggmusUniPk GM12878 SMC3 narrowPeak GM12878 TFBS Uniform Peaks of SMC3_(ab9263) from ENCODE/Stanford/Analysis 1 69 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of SMC3_(ab9263) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 SMC3\ subGroups tier=a10 cellType=a10GM12878 factor=SMC3 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Smc3ab9263IggmusUniPk\ wgEncodeHaibTfbsGm12878Mef2csc13268V0416101PkRep2 GM78 MEFC V101 2 broadPeak GM12878 MEF2C v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 69 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 MEF2C v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 MEFC V101 2\ subGroups view=Peaks factor=MEF2CSC13268 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Mef2csc13268V0416101PkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12878Rfx5200401194IggmusPk GM78 RFX5 IgM narrowPeak GM12878 RFX5 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 69 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 RFX5 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 RFX5 IgM\ subGroups view=Peaks factor=RFX5200401194 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Rfx5200401194IggmusPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescPhf8a301772aSig H1-hESC PHF8 bigWig 0.040000 340.799988 H1-hESC PHF8 (A301-772A) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 69 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC PHF8 (A301-772A) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC PHF8\ subGroups view=Signal factor=PHF8A301772A cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescPhf8a301772aSig\ type bigWig 0.040000 340.799988\ wgEncodeCshlLongRnaSeqH1hescCellPapMinusRawSigRep1 H1hSC cel pA+ - 1 bigWig 1.000000 458570.000000 H1-hESC whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 69 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel H1hSC cel pA+ - 1\ subGroups view=MinusSignal cellType=t1H1HESC localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqH1hescCellPapMinusRawSigRep1\ type bigWig 1.000000 458570.000000\ wgEncodeUwDgfHcfaaHotspots HCFaa Hot broadPeak HCFaa DNaseI DGF Hotspots from ENCODE/UW 0 69 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCFaa DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HCFaa Hot\ subGroups view=Hotspots cellType=t3HCFAA treatment=aNONE rep=rep1\ track wgEncodeUwDgfHcfaaHotspots\ type broadPeak\ wgEncodeUwAffyExonArrayHcpeSimpleSignalRep1 HCPEpiC 1 broadPeak HCPEpiC Exon array Signal Rep 1 from ENCODE/UW 0 69 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCPEpiC Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HCPEpiC 1\ subGroups cellType=t3HCPEPIC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHcpeSimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethylRrbsHct116StanfordSitesRep1 HCT-116 1 bed 9 + HCT-116 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 69 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HCT-116 1\ subGroups cellType=t3HCT116 obtainedBy=Stanford treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHct116StanfordSitesRep1\ type bed 9 +\ wgEncodeUwHistoneHelas3H3k36me3StdHotspotsRep1 HeLa H3K36M3 Ht 1 broadPeak HeLa-S3 H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 69 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HeLa H3K36M3 Ht 1\ subGroups view=Hot factor=H3K36ME3 cellType=t2HELAS3 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k36me3StdHotspotsRep1\ type broadPeak\ wgEncodeGisRnaPetHelas3NucleusPapAlnRep1V2 HeLa nucl pA+ A 1 bam HeLa-S3 nucleus polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS 0 69 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel HeLa nucl pA+ A 1\ subGroups view=v3Alignments cellType=bHELAS3 cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHelas3NucleusPapAlnRep1V2\ type bam\ wgEncodeCaltechRnaSeqHepg2R2x75Il200AlignsRep1V2 HepG 2x75 A 1 bam HepG2 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 69 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel HepG 2x75 A 1\ subGroups view=Aligns cellType=t2HEPG2 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHepg2R2x75Il200AlignsRep1V2\ type bam\ wgEncodeAwgDnaseDukeHpde6e6e7UniPk HPDE6-E6E7 DNase narrowPeak HPDE6-E6E7 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 69 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HPDE6-E6E7 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HPDE6-E6E7 DNase\ subGroups tier=a30 cellType=HPDE6-E6E7\ track wgEncodeAwgDnaseDukeHpde6e6e7UniPk\ wgEncodeOpenChromFaireHtr8BaseOverlapSignal HTR8svn FAIRE OS bigWig 0.000000 1371.000000 HTR8svn FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 69 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HTR8svn FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel HTR8svn FAIRE OS\ subGroups treatment=AANONE view=SIGBO cellType=t3HTR8SVN\ track wgEncodeOpenChromFaireHtr8BaseOverlapSignal\ type bigWig 0.000000 1371.000000\ wgEncodeRikenCageK562NucleolusTotalPlusSignal K562 nlus tot + 1 bigWig 0.050000 38081.750000 K562 nucleolus total CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 69 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleolus total CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel K562 nlus tot + 1\ subGroups view=PlusRawSignal cellType=t1K562 localization=nucleolus rnaExtract=total rep=rep1 rank=rank1\ track wgEncodeRikenCageK562NucleolusTotalPlusSignal\ type bigWig 0.050000 38081.750000\ wgEncodeOpenChromChipMcf7CmycEstroBaseOverlapSignal MCF-7 est cMyc OS bigWig 0.000000 2368.000000 MCF-7 estrogen cMyc TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 69 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 estrogen cMyc TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel MCF-7 est cMyc OS\ subGroups view=SIGBO factor=CMYC cellType=t2MCF7 treatment=ESTRO\ track wgEncodeOpenChromChipMcf7CmycEstroBaseOverlapSignal\ type bigWig 0.000000 2368.000000\ wgEncodeUwRepliSeqMcf7WaveSignalRep1 MCF-7 Ws 1 bigWig -3.953135 86.434151 MCF-7 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW 2 69 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewWaveSignal off\ shortLabel MCF-7 Ws 1\ subGroups view=v4WaveSignal cellType=t2MCF7 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqMcf7WaveSignalRep1\ type bigWig -3.953135 86.434151\ wgEncodeUwDnaseMcf7HotspotsRep2 MCF7 Ht 2 broadPeak MCF-7 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 69 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel MCF7 Ht 2\ subGroups view=Hot cellType=t2MCF7 rep=rep2 treatment=None\ track wgEncodeUwDnaseMcf7HotspotsRep2\ type broadPeak\ wgEncodeHaibGenotypeNhbeRegionsRep1 NHBE 1 bed 9 + NHBE Copy number variants Replicate 1 from ENCODE/HAIB 0 69 0 0 0 127 127 127 0 0 0 varRep 1 longLabel NHBE Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel NHBE 1\ subGroups cellType=t3NHBE obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeNhbeRegionsRep1\ type bed 9 +\ wgEncodeHaibRnaSeqT47dDm002p4hRawRep1 T-47D DMSO 1 bigWig 0.138023 880.583984 T-47D DMSO 4 hr 0.02% RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 69 0 0 0 127 127 127 0 0 0 expression 0 longLabel T-47D DMSO 4 hr 0.02% RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel T-47D DMSO 1\ subGroups view=RawSignal cellType=t3T47D treatment=DM002P4H rep=rep1\ track wgEncodeHaibRnaSeqT47dDm002p4hRawRep1\ type bigWig 0.138023 880.583984\ wgEncodeCshlShortRnaSeqA549CellShorttotalCiptapMinusRep3 A549 cell CIP - 1 bigWig 1.000000 4763731.000000 A549 CIP-TAP whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 70 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 CIP-TAP whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel A549 cell CIP - 1\ subGroups view=MinusSignal cellType=t2A549 localization=CELL protocol=CIPTAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqA549CellShorttotalCiptapMinusRep3\ type bigWig 1.000000 4763731.000000\ wgEncodeUwTfbsAg09309CtcfStdHotspotsRep2 AG09 CTCF Ht 2 broadPeak AG09309 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 70 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09309 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel AG09 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3AG09309 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAg09309CtcfStdHotspotsRep2\ type broadPeak\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_ctss_rev AorticSmsToIL1b_00hr45minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_reverse 0 70 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep1%20%28LK40%29.CNhs13352.12655-134H9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12655-134H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_tpm_rev AorticSmsToIL1b_00hr45minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_reverse 1 70 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep1%20%28LK40%29.CNhs13352.12655-134H9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12655-134H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseAdultcd4th0Pk CD4+ Th0 Pk narrowPeak Adult CD4+ Th0 DNaseI HS Peaks from ENCODE/Duke 3 70 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Adult CD4+ Th0 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel CD4+ Th0 Pk\ subGroups view=Peaks cellType=t3ADULTCD4TH0 treatment=zNONE\ track wgEncodeOpenChromDnaseAdultcd4th0Pk\ type narrowPeak\ pgNA20846indel GIH NA20846 indel pgSnp GIH NA20846 indel (Complete Genomics) 0 70 0 0 0 127 127 127 0 0 0 varRep 1 longLabel GIH NA20846 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel GIH NA20846 indel\ subGroups view=C_CG id=CD_div_GS20846 type=Indel\ track pgNA20846indel\ encTfChipPkENCFF930QUM GM06990 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM06990 from ENCODE 3 (ENCFF930QUM) 1 70 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM06990 from ENCODE 3 (ENCFF930QUM)\ parent encTfChipPk off\ shortLabel GM06990 CTCF\ subGroups cellType=GM06990 factor=CTCF\ track encTfChipPkENCFF930QUM\ wgEncodeAwgTfbsHaibGm12878Sp1Pcr1xUniPk GM12878 SP1 narrowPeak GM12878 TFBS Uniform Peaks of SP1 from ENCODE/HudsonAlpha/Analysis 1 70 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of SP1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel GM12878 SP1\ subGroups tier=a10 cellType=a10GM12878 factor=SP1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Sp1Pcr1xUniPk\ wgEncodeDukeAffyExonGm12891SimpleSignalRep1V2 GM12891 1 bigBed 6 + GM12891 Exon array Signal Rep 1 from ENCODE/Duke 0 70 0 0 0 127 127 127 1 0 0 expression 1 longLabel GM12891 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel GM12891 1\ subGroups cellType=t3GM12891 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonGm12891SimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeHaibTfbsGm12878Mef2csc13268V0416101RawRep2 GM78 MEFC V101 2 bigWig 0.227777 159.158997 GM12878 MEF2C v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 70 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 MEF2C v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 MEFC V101 2\ subGroups view=RawSignal factor=MEF2CSC13268 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Mef2csc13268V0416101RawRep2\ type bigWig 0.227777 159.158997\ wgEncodeSydhTfbsGm12878Rfx5200401194IggmusSig GM78 RFX5 IgM bigWig 1.000000 12822.000000 GM12878 RFX5 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 70 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 RFX5 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 RFX5 IgM\ subGroups view=Signal factor=RFX5200401194 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Rfx5200401194IggmusSig\ type bigWig 1.000000 12822.000000\ wgEncodeBroadHistoneH1hescPlu1Pk H1-hESC PLU1 broadPeak H1-hESC PLU1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 70 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC PLU1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC PLU1\ subGroups view=Peaks factor=PLU1 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescPlu1Pk\ type broadPeak\ wgEncodeCshlLongRnaSeqH1hescCellPapMinusRawSigRep2 H1hSC cel pA+ - 2 bigWig 1.000000 337372.000000 H1-hESC whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 70 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel H1hSC cel pA+ - 2\ subGroups view=MinusSignal cellType=t1H1HESC localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescCellPapMinusRawSigRep2\ type bigWig 1.000000 337372.000000\ wgEncodeUwDgfHcfaaPk HCFaa Pk narrowPeak HCFaa DNaseI DGF Peaks from ENCODE/UW 0 70 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCFaa DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HCFaa Pk\ subGroups view=Peaks cellType=t3HCFAA treatment=aNONE rep=rep1\ track wgEncodeUwDgfHcfaaPk\ type narrowPeak\ wgEncodeUwAffyExonArrayHcpeSimpleSignalRep2 HCPEpiC 2 broadPeak HCPEpiC Exon array Signal Rep 2 from ENCODE/UW 0 70 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCPEpiC Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HCPEpiC 2\ subGroups cellType=t3HCPEPIC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHcpeSimpleSignalRep2\ type broadPeak\ wgEncodeHaibMethylRrbsHct116StanfordSitesRep2 HCT-116 2 bed 9 + HCT-116 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 70 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HCT-116 2\ subGroups cellType=t3HCT116 obtainedBy=Stanford treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHct116StanfordSitesRep2\ type bed 9 +\ wgEncodeUwHistoneHelas3H3k36me3StdPkRep1 HeLa H3K36M3 Pk 1 narrowPeak HeLa-S3 H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 70 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HeLa H3K36M3 Pk 1\ subGroups view=Peaks factor=H3K36ME3 cellType=t2HELAS3 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k36me3StdPkRep1\ type narrowPeak\ wgEncodeCaltechRnaSeqHepg2R2x75Il200AlignsRep2V2 HepG 2x75 A 2 bam HepG2 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 70 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel HepG 2x75 A 2\ subGroups view=Aligns cellType=t2HEPG2 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHepg2R2x75Il200AlignsRep2V2\ type bam\ wgEncodeGisRnaPetHepg2CytosolPapClustersRep1 HepG cyto pA+ 1 bed 6 + HepG2 cytosol polyA+ clone-based RNA PET Clusters Rep 1 from ENCODE/GIS 2 70 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 cytosol polyA+ clone-based RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel HepG cyto pA+ 1\ subGroups view=v1Clusters cellType=bHEPG2 cloned=Based localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHepg2CytosolPapClustersRep1\ type bed 6 +\ wgEncodeAwgDnaseUwHpfUniPk HPF DNase narrowPeak HPF DNaseI HS Uniform Peaks from ENCODE/Analysis 1 70 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HPF DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HPF DNase\ subGroups tier=a30 cellType=HPF\ track wgEncodeAwgDnaseUwHpfUniPk\ wgEncodeRikenCageK562NucleolusTotalMinusSignal K562 nlus tot - 1 bigWig 0.050000 19662.699219 K562 nucleolus total CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 70 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleolus total CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel K562 nlus tot - 1\ subGroups view=MinusRawSignal cellType=t1K562 localization=nucleolus rnaExtract=total rep=rep1 rank=rank1\ track wgEncodeRikenCageK562NucleolusTotalMinusSignal\ type bigWig 0.050000 19662.699219\ wgEncodeOpenChromFaireKidneyocPk Kidney FAIRE Pk narrowPeak Kidney FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 70 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Kidney FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel Kidney FAIRE Pk\ subGroups view=Peaks cellType=t3KIDNEYOC treatment=AANONE\ track wgEncodeOpenChromFaireKidneyocPk\ type narrowPeak\ wgEncodeOpenChromChipMcf7CmycSerumstvdPkRep1 MCF-7 cMyc stv Pk narrowPeak MCF-7 serum starved cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 70 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 serum starved cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel MCF-7 cMyc stv Pk\ subGroups view=Peaks factor=CMYC cellType=t2MCF7 treatment=SERUMSTAVD\ track wgEncodeOpenChromChipMcf7CmycSerumstvdPkRep1\ type narrowPeak\ wgEncodeUwRepliSeqMcf7SumSignalRep1 MCF-7 Sd 1 bigWig 1.000000 5286.000000 MCF-7 Repli-seq Summed Densities Rep 1 from ENCODE/UW 0 70 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Repli-seq Summed Densities Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewSumSignal off\ shortLabel MCF-7 Sd 1\ subGroups view=v5SumSignal cellType=t2MCF7 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqMcf7SumSignalRep1\ type bigWig 1.000000 5286.000000\ wgEncodeUwDnaseMcf7Est100nm1hPkRep2 MCF7 Est1h Pk 2 narrowPeak MCF-7 Estradiol 100 nM 1 hr DNaseI HS Peaks Rep 2 from ENCODE/UW 1 70 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 Estradiol 100 nM 1 hr DNaseI HS Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel MCF7 Est1h Pk 2\ subGroups view=Peaks cellType=t2MCF7 treatment=EST100NM1H rep=rep2\ track wgEncodeUwDnaseMcf7Est100nm1hPkRep2\ type narrowPeak\ wgEncodeHaibGenotypeNhbeRegionsRep2 NHBE 2 bed 9 + NHBE Copy number variants Replicate 2 from ENCODE/HAIB 0 70 0 0 0 127 127 127 0 0 0 varRep 1 longLabel NHBE Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel NHBE 2\ subGroups cellType=t3NHBE obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeNhbeRegionsRep2\ type bed 9 +\ wgEncodeHaibRnaSeqT47dDm002p4hAlnRep1 T-47D DMSO 1 bam T-47D DMSO 4 hr 0.02% RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 70 0 0 0 127 127 127 0 0 0 expression 1 longLabel T-47D DMSO 4 hr 0.02% RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel T-47D DMSO 1\ subGroups view=Alignments cellType=t3T47D treatment=DM002P4H rep=rep1\ track wgEncodeHaibRnaSeqT47dDm002p4hAlnRep1\ type bam\ wgEncodeCshlShortRnaSeqA549CellShorttotalCiptapMinusRep4 A549 cell CIP - 2 bigWig 1.000000 6632740.000000 A549 CIP-TAP whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 71 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 CIP-TAP whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel A549 cell CIP - 2\ subGroups view=MinusSignal cellType=t2A549 localization=CELL protocol=CIPTAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqA549CellShorttotalCiptapMinusRep4\ type bigWig 1.000000 6632740.000000\ wgEncodeUwTfbsAg09309CtcfStdPkRep2 AG09 CTCF Pk 2 narrowPeak AG09309 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 71 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09309 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel AG09 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3AG09309 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAg09309CtcfStdPkRep2\ type narrowPeak\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_ctss_fwd AorticSmsToIL1b_00hr45minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_forward 0 71 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep2%20%28LK41%29.CNhs13372.12753-136A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12753-136A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_tpm_fwd AorticSmsToIL1b_00hr45minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_forward 1 71 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep2%20%28LK41%29.CNhs13372.12753-136A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12753-136A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseAdultcd4th0Sig CD4+ Th0 DS bigWig 0.000000 2.507900 Adult CD4+ Th0 DNaseI HS Density Signal from ENCODE/Duke 2 71 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Adult CD4+ Th0 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel CD4+ Th0 DS\ subGroups view=SIG cellType=t3ADULTCD4TH0 treatment=zNONE\ track wgEncodeOpenChromDnaseAdultcd4th0Sig\ type bigWig 0.000000 2.507900\ pgNA20847 GIH NA20847 pgSnp GIH NA20847 (Complete Genomics) 0 71 0 0 0 127 127 127 0 0 0 varRep 1 longLabel GIH NA20847 (Complete Genomics)\ parent pgSnpCg\ shortLabel GIH NA20847\ subGroups view=C_CG id=CD_div_GS20847 type=SNP\ track pgNA20847\ encTfChipPkENCFF757CRW GM08714 ZNF274 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF274 in GM08714 from ENCODE 3 (ENCFF757CRW) 1 71 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF274 in GM08714 from ENCODE 3 (ENCFF757CRW)\ parent encTfChipPk off\ shortLabel GM08714 ZNF274\ subGroups cellType=GM08714 factor=ZNF274\ track encTfChipPkENCFF757CRW\ wgEncodeAwgTfbsHaibGm12878Pu1Pcr1xUniPk GM12878 SPI1 narrowPeak GM12878 TFBS Uniform Peaks of PU.1 from ENCODE/HudsonAlpha/Analysis 1 71 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of PU.1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 SPI1\ subGroups tier=a10 cellType=a10GM12878 factor=SPI1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Pu1Pcr1xUniPk\ wgEncodeDukeAffyExonGm12891SimpleSignalRep2V2 GM12891 2 bigBed 6 + GM12891 Exon array Signal Rep 2 from ENCODE/Duke 0 71 0 0 0 127 127 127 1 0 0 expression 1 longLabel GM12891 Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel GM12891 2\ subGroups cellType=t3GM12891 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonGm12891SimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeHaibTfbsGm12878Mta3sc81325V0422111PkRep1 GM78 MTA3 V11 1 broadPeak GM12878 MTA3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 71 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 MTA3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 MTA3 V11 1\ subGroups view=Peaks factor=MTA3SC81325 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Mta3sc81325V0422111PkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878Sin3anb6001263IggmusPk GM78 SIN3A IgM narrowPeak GM12878 SIN3A IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 71 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 SIN3A IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 SIN3A IgM\ subGroups view=Peaks factor=SIN3ANB6001263 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Sin3anb6001263IggmusPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescPlu1Sig H1-hESC PLU1 bigWig 0.040000 368.399994 H1-hESC PLU1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 71 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC PLU1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC PLU1\ subGroups view=Signal factor=PLU1 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescPlu1Sig\ type bigWig 0.040000 368.399994\ wgEncodeCshlLongRnaSeqH1hescCellPapPlusRawSigRep1 H1hSC cel pA+ + 1 bigWig 1.000000 1426609.000000 H1-hESC whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 71 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel H1hSC cel pA+ + 1\ subGroups view=PlusSignal cellType=t1H1HESC localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqH1hescCellPapPlusRawSigRep1\ type bigWig 1.000000 1426609.000000\ wgEncodeUwDgfHcfaaSig HCFaa Sig bigWig 1.000000 62515.000000 HCFaa DNaseI DGF Per-base Signal from ENCODE/UW 2 71 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCFaa DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HCFaa Sig\ subGroups view=Signal cellType=t3HCFAA treatment=aNONE rep=rep1\ track wgEncodeUwDgfHcfaaSig\ type bigWig 1.000000 62515.000000\ wgEncodeUwAffyExonArrayHct116SimpleSignalRep1 HCT-116 1 broadPeak HCT-116 Exon array Signal Rep 1 from ENCODE/UW 0 71 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCT-116 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HCT-116 1\ subGroups cellType=t3HCT116 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHct116SimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethylRrbsHeeUwSitesRep1 HEEpiC 1 bed 9 + HEEpiC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 71 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpiC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HEEpiC 1\ subGroups cellType=t3HEEPIC obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHeeUwSitesRep1\ type bed 9 +\ wgEncodeUwHistoneHelas3H3k36me3StdRawRep1 HeLa H3K36M3 Sg 1 bigWig 1.000000 8609.000000 HeLa-S3 H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 71 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HeLa H3K36M3 Sg 1\ subGroups view=zRSig factor=H3K36ME3 cellType=t2HELAS3 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k36me3StdRawRep1\ type bigWig 1.000000 8609.000000\ wgEncodeCaltechRnaSeqHepg2R2x75Th1014Il200SigRep1V4 HepG 2x75 Sg 1 bigWig 0.024300 222408.000000 HepG2 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech 2 71 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel HepG 2x75 Sg 1\ subGroups view=Signal cellType=t2HEPG2 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHepg2R2x75Th1014Il200SigRep1V4\ type bigWig 0.024300 222408.000000\ wgEncodeGisRnaPetHepg2CytosolPapMinusRawSigRep1 HepG cyto pA+ - 1 bigWig 1.000000 235211.000000 HepG2 cytosol polyA+ clone-based RNA PET Minus signal Rep 1 from ENCODE/GIS 2 71 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 cytosol polyA+ clone-based RNA PET Minus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel HepG cyto pA+ - 1\ subGroups view=v2MinusRawSignal cellType=bHEPG2 cloned=Based localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHepg2CytosolPapMinusRawSigRep1\ type bigWig 1.000000 235211.000000\ wgEncodeAwgDnaseUwHpdlfUniPk HPdLF DNase narrowPeak HPdLF DNaseI HS Uniform Peaks from ENCODE/Analysis 1 71 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HPdLF DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HPdLF DNase\ subGroups tier=a30 cellType=HPdLF\ track wgEncodeAwgDnaseUwHpdlfUniPk\ wgEncodeRikenCageK562NucleolusTotalAln K562 nlus tot A 1 bam K562 nucleolus total CAGE Alignments Rep 1 from ENCODE/RIKEN 0 71 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleolus total CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel K562 nlus tot A 1\ subGroups view=Alignments cellType=t1K562 localization=nucleolus rnaExtract=total rep=rep1 rank=rank1\ track wgEncodeRikenCageK562NucleolusTotalAln\ type bam\ wgEncodeOpenChromFaireKidneyocSig Kidney FAIRE DS bigWig 0.000000 1.018100 Kidney FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 71 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Kidney FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel Kidney FAIRE DS\ subGroups view=SIG cellType=t3KIDNEYOC treatment=AANONE\ track wgEncodeOpenChromFaireKidneyocSig\ type bigWig 0.000000 1.018100\ wgEncodeOpenChromChipMcf7CmycSerumstvdSig MCF-7 cMyc stv DS bigWig 0.000000 1.093700 MCF-7 serum starved cMyc TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 71 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 serum starved cMyc TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel MCF-7 cMyc stv DS\ subGroups view=SIG factor=CMYC cellType=t2MCF7 treatment=SERUMSTAVD\ track wgEncodeOpenChromChipMcf7CmycSerumstvdSig\ type bigWig 0.000000 1.093700\ wgEncodeUwDnaseMcf7Estctrl0hPkRep2 MCF7 EstCtrl Pk 2 narrowPeak MCF-7 Estradiol Control 0 hr DNaseI HS Peaks Rep 2 from ENCODE/UW 1 71 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 Estradiol Control 0 hr DNaseI HS Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel MCF7 EstCtrl Pk 2\ subGroups view=Peaks cellType=t2MCF7 treatment=ESTCTRL0H rep=rep2\ track wgEncodeUwDnaseMcf7Estctrl0hPkRep2\ type narrowPeak\ wgEncodeHaibGenotypeNhdfneoRegionsRep1 NHDF-neo 1 bed 9 + NHDF-neo Copy number variants Replicate 1 from ENCODE/HAIB 0 71 0 0 0 127 127 127 0 0 0 varRep 1 longLabel NHDF-neo Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel NHDF-neo 1\ subGroups cellType=t3NHDFNEO obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeNhdfneoRegionsRep1\ type bed 9 +\ wgEncodeUwRepliSeqSknshG1bPctSignalRep1 SK-N-SH G1b 1 bigWig 1.000000 100.000000 SK-N-SH G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 71 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel SK-N-SH G1b 1\ subGroups view=v1PctSignal cellType=t2SKNSH phase=p1G1B rep=rep1\ track wgEncodeUwRepliSeqSknshG1bPctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeHaibRnaSeqT47dDm002p4hRawRep2 T-47D DMSO 2 bigWig 0.098354 737.018005 T-47D DMSO 4 hr 0.02% RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 71 0 0 0 127 127 127 0 0 0 expression 0 longLabel T-47D DMSO 4 hr 0.02% RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel T-47D DMSO 2\ subGroups view=RawSignal cellType=t3T47D treatment=DM002P4H rep=rep2\ track wgEncodeHaibRnaSeqT47dDm002p4hRawRep2\ type bigWig 0.098354 737.018005\ wgEncodeCshlShortRnaSeqA549CellShorttotalCiptapPlusRep3 A549 cell CIP + 1 bigWig 1.000000 4744248.000000 A549 CIP-TAP whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 72 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 CIP-TAP whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 cell CIP + 1\ subGroups view=PlusSignal cellType=t2A549 localization=CELL protocol=CIPTAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqA549CellShorttotalCiptapPlusRep3\ type bigWig 1.000000 4744248.000000\ wgEncodeUwTfbsAg09309CtcfStdRawRep2 AG09 CTCF Sg 2 bigWig 1.000000 7371.000000 AG09309 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 72 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG09309 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AG09 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3AG09309 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAg09309CtcfStdRawRep2\ type bigWig 1.000000 7371.000000\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_ctss_rev AorticSmsToIL1b_00hr45minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_reverse 0 72 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep2%20%28LK41%29.CNhs13372.12753-136A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12753-136A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_tpm_rev AorticSmsToIL1b_00hr45minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_reverse 1 72 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep2%20%28LK41%29.CNhs13372.12753-136A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12753-136A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseAdultcd4th0BaseOverlapSignal CD4+ Th0 OS bigWig 0.000000 330.000000 Adult CD4+ Th0 DNaseI HS Overlap Signal from ENCODE/Duke 2 72 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Adult CD4+ Th0 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel CD4+ Th0 OS\ subGroups view=SIGBO cellType=t3ADULTCD4TH0 treatment=zNONE\ track wgEncodeOpenChromDnaseAdultcd4th0BaseOverlapSignal\ type bigWig 0.000000 330.000000\ pgNA20847indel GIH NA20847 indel pgSnp GIH NA20847 indel (Complete Genomics) 0 72 0 0 0 127 127 127 0 0 0 varRep 1 longLabel GIH NA20847 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel GIH NA20847 indel\ subGroups view=C_CG id=CD_div_GS20847 type=Indel\ track pgNA20847indel\ encTfChipPkENCFF855HSK GM10266 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM10266 from ENCODE 3 (ENCFF855HSK) 1 72 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM10266 from ENCODE 3 (ENCFF855HSK)\ parent encTfChipPk off\ shortLabel GM10266 CTCF\ subGroups cellType=GM10266 factor=CTCF\ track encTfChipPkENCFF855HSK\ wgEncodeAwgTfbsHaibGm12878SrfPcr2xUniPk GM12878 SRF narrowPeak GM12878 TFBS Uniform Peaks of SRF from ENCODE/HudsonAlpha/Analysis 1 72 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of SRF from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 SRF\ subGroups tier=a10 cellType=a10GM12878 factor=SRF lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878SrfPcr2xUniPk\ wgEncodeDukeAffyExonGm12892SimpleSignalRep1V2 GM12892 1 bigBed 6 + GM12892 Exon array Signal Rep 1 from ENCODE/Duke 0 72 0 0 0 127 127 127 1 0 0 expression 1 longLabel GM12892 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel GM12892 1\ subGroups cellType=t3GM12892 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonGm12892SimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeHaibTfbsGm12878Mta3sc81325V0422111RawRep1 GM78 MTA3 V11 1 bigWig 0.124447 108.705002 GM12878 MTA3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 72 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 MTA3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 MTA3 V11 1\ subGroups view=RawSignal factor=MTA3SC81325 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Mta3sc81325V0422111RawRep1\ type bigWig 0.124447 108.705002\ wgEncodeSydhTfbsGm12878Sin3anb6001263IggmusSig GM78 SIN3A IgM bigWig 1.000000 9364.000000 GM12878 SIN3A IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 72 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 SIN3A IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 SIN3A IgM\ subGroups view=Signal factor=SIN3ANB6001263 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Sin3anb6001263IggmusSig\ type bigWig 1.000000 9364.000000\ wgEncodeBroadHistoneH1hescRbbp5a300109aStdPk H1-hESC RBBP5 broadPeak H1-hESC RBBP5 (A300-109A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 72 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC RBBP5 (A300-109A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC RBBP5\ subGroups view=Peaks factor=RBBP5A300109A cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescRbbp5a300109aStdPk\ type broadPeak\ wgEncodeCshlLongRnaSeqH1hescCellPapPlusRawSigRep2 H1hSC cel pA+ + 2 bigWig 1.000000 676628.000000 H1-hESC whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 72 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel H1hSC cel pA+ + 2\ subGroups view=PlusSignal cellType=t1H1HESC localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescCellPapPlusRawSigRep2\ type bigWig 1.000000 676628.000000\ wgEncodeUwDgfHcfaaRaw HCFaa Raw bigWig 1.000000 301616.000000 HCFaa DNaseI DGF Raw Signal from ENCODE/UW 0 72 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCFaa DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HCFaa Raw\ subGroups view=zRaw cellType=t3HCFAA treatment=aNONE rep=rep1\ track wgEncodeUwDgfHcfaaRaw\ type bigWig 1.000000 301616.000000\ wgEncodeUwAffyExonArrayHct116SimpleSignalRep2 HCT-116 2 broadPeak HCT-116 Exon array Signal Rep 2 from ENCODE/UW 0 72 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCT-116 Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HCT-116 2\ subGroups cellType=t3HCT116 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHct116SimpleSignalRep2\ type broadPeak\ wgEncodeHaibMethylRrbsHeeUwSitesRep2 HEEpiC 2 bed 9 + HEEpiC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 72 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpiC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HEEpiC 2\ subGroups cellType=t3HEEPIC obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHeeUwSitesRep2\ type bed 9 +\ wgEncodeUwHistoneHelas3H3k36me3StdHotspotsRep2 HeLa H3K36M3 Ht 2 broadPeak HeLa-S3 H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 72 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HeLa H3K36M3 Ht 2\ subGroups view=Hot factor=H3K36ME3 cellType=t2HELAS3 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k36me3StdHotspotsRep2\ type broadPeak\ wgEncodeCaltechRnaSeqHepg2R2x75Th1014Il200SigRep2V4 HepG 2x75 Sg 2 bigWig 0.024300 201608.000000 HepG2 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech 2 72 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel HepG 2x75 Sg 2\ subGroups view=Signal cellType=t2HEPG2 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHepg2R2x75Th1014Il200SigRep2V4\ type bigWig 0.024300 201608.000000\ wgEncodeGisRnaPetHepg2CytosolPapPlusRawSigRep1 HepG cyto pA+ + 1 bigWig 1.000000 124707.000000 HepG2 cytosol polyA+ clone-based RNA PET Plus signal Rep 1 from ENCODE/GIS 2 72 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 cytosol polyA+ clone-based RNA PET Plus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel HepG cyto pA+ + 1\ subGroups view=v2PlusRawSignal cellType=bHEPG2 cloned=Based localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHepg2CytosolPapPlusRawSigRep1\ type bigWig 1.000000 124707.000000\ wgEncodeAwgDnaseUwHrcepicUniPk HRCEpiC DNase narrowPeak HRCEpiC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 72 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HRCEpiC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HRCEpiC DNase\ subGroups tier=a30 cellType=HRCEpiC\ track wgEncodeAwgDnaseUwHrcepicUniPk\ wgEncodeRikenCageK562NucleoplasmTotalTssHmmV3 K562 nplm tot bed 6 K562 nucleoplasm total CAGE TSS HMM from ENCODE/RIKEN 3 72 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleoplasm total CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel K562 nplm tot\ subGroups view=TssHmm cellType=t1K562 localization=nucleoplasm rnaExtract=total rep=rep0 rank=rankP\ track wgEncodeRikenCageK562NucleoplasmTotalTssHmmV3\ type bed 6\ wgEncodeOpenChromFaireKidneyocBaseOverlapSignal Kidney FAIRE OS bigWig 0.000000 2031.000000 Kidney FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 72 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Kidney FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel Kidney FAIRE OS\ subGroups view=SIGBO cellType=t3KIDNEYOC treatment=AANONE\ track wgEncodeOpenChromFaireKidneyocBaseOverlapSignal\ type bigWig 0.000000 2031.000000\ wgEncodeOpenChromChipMcf7CmycSerumstvdBaseOverlapSignal MCF-7 cMyc stv OS bigWig 0.000000 2682.000000 MCF-7 serum starved cMyc TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 72 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 serum starved cMyc TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel MCF-7 cMyc stv OS\ subGroups view=SIGBO factor=CMYC cellType=t2MCF7 treatment=SERUMSTAVD\ track wgEncodeOpenChromChipMcf7CmycSerumstvdBaseOverlapSignal\ type bigWig 0.000000 2682.000000\ wgEncodeUwDnaseMcf7PkRep2 MCF7 Pk 2 narrowPeak MCF-7 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 72 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel MCF7 Pk 2\ subGroups view=Peaks cellType=t2MCF7 rep=rep2 treatment=None\ track wgEncodeUwDnaseMcf7PkRep2\ type narrowPeak\ wgEncodeHaibGenotypeNt2d1RegionsRep1 NT2-D1 1 bed 9 + NT2-D1 Copy number variants Replicate 1 from ENCODE/HAIB 0 72 0 0 0 127 127 127 0 0 0 varRep 1 longLabel NT2-D1 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel NT2-D1 1\ subGroups cellType=t3NT2D1 obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeNt2d1RegionsRep1\ type bed 9 +\ wgEncodeUwRepliSeqSknshS1PctSignalRep1 SK-N-SH S1 1 bigWig 1.000000 100.000000 SK-N-SH S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 72 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel SK-N-SH S1 1\ subGroups view=v1PctSignal cellType=t2SKNSH phase=p2S1 rep=rep1\ track wgEncodeUwRepliSeqSknshS1PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeHaibRnaSeqT47dDm002p4hAlnRep2 T-47D DMSO 2 bam T-47D DMSO 4 hr 0.02% RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 72 0 0 0 127 127 127 0 0 0 expression 1 longLabel T-47D DMSO 4 hr 0.02% RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel T-47D DMSO 2\ subGroups view=Alignments cellType=t3T47D treatment=DM002P4H rep=rep2\ track wgEncodeHaibRnaSeqT47dDm002p4hAlnRep2\ type bam\ wgEncodeCshlShortRnaSeqA549CellShorttotalCiptapPlusRep4 A549 cell CIP + 2 bigWig 1.000000 6610431.000000 A549 CIP-TAP whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 73 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 CIP-TAP whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 cell CIP + 2\ subGroups view=PlusSignal cellType=t2A549 localization=CELL protocol=CIPTAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqA549CellShorttotalCiptapPlusRep4\ type bigWig 1.000000 6610431.000000\ wgEncodeUwTfbsAg09309InputStdRawRep1 AG09 In Sg 1 bigWig 1.000000 7173.000000 AG09309 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 73 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG09309 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AG09 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3AG09309 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg09309InputStdRawRep1\ type bigWig 1.000000 7173.000000\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_ctss_fwd AorticSmsToIL1b_00hr45minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_forward 0 73 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep3%20%28LK42%29.CNhs13580.12851-137C7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12851-137C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_tpm_fwd AorticSmsToIL1b_00hr45minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_forward 1 73 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep3%20%28LK42%29.CNhs13580.12851-137C7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12851-137C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseAdultcd4th1Pk CD4+ Th1 Pk narrowPeak Adult CD4+ Th1 DNaseI HS Peaks from ENCODE/Duke 3 73 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Adult CD4+ Th1 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel CD4+ Th1 Pk\ subGroups view=Peaks cellType=t3ADULTCD4TH1 treatment=zNONE\ track wgEncodeOpenChromDnaseAdultcd4th1Pk\ type narrowPeak\ pgNA20850 GIH NA20850 pgSnp GIH NA20850 (Complete Genomics) 0 73 0 0 0 127 127 127 0 0 0 varRep 1 longLabel GIH NA20850 (Complete Genomics)\ parent pgSnpCg\ shortLabel GIH NA20850\ subGroups view=C_CG id=CD_div_GS20850 type=SNP\ track pgNA20850\ encTfChipPkENCFF671RVI GM12864 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12864 from ENCODE 3 (ENCFF671RVI) 1 73 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12864 from ENCODE 3 (ENCFF671RVI)\ parent encTfChipPk off\ shortLabel GM12864 CTCF\ subGroups cellType=GM12864 factor=CTCF\ track encTfChipPkENCFF671RVI\ wgEncodeAwgTfbsSydhGm12878Stat1UniPk GM12878 STAT1 narrowPeak GM12878 TFBS Uniform Peaks of STAT1 from ENCODE/Stanford/Analysis 1 73 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of STAT1 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 STAT1\ subGroups tier=a10 cellType=a10GM12878 factor=STAT1 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Stat1UniPk\ wgEncodeDukeAffyExonGm12892SimpleSignalRep2V2 GM12892 2 bigBed 6 + GM12892 Exon array Signal Rep 2 from ENCODE/Duke 0 73 0 0 0 127 127 127 1 0 0 expression 1 longLabel GM12892 Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel GM12892 2\ subGroups cellType=t3GM12892 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonGm12892SimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeHaibTfbsGm12878Mta3sc81325V0422111PkRep2 GM78 MTA3 V11 2 broadPeak GM12878 MTA3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 73 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 MTA3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 MTA3 V11 2\ subGroups view=Peaks factor=MTA3SC81325 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Mta3sc81325V0422111PkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12878Smc3ab9263IggmusPk GM78 SMC3 IgM narrowPeak GM12878 SMC3 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 73 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 SMC3 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 SMC3 IgM\ subGroups view=Peaks factor=SMC3ab9263 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Smc3ab9263IggmusPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescRbbp5a300109aStdSig H1-hESC RBBP5 bigWig 0.040000 20446.599609 H1-hESC RBBP5 (A300-109A) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 73 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC RBBP5 (A300-109A) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC RBBP5\ subGroups view=Signal factor=RBBP5A300109A cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescRbbp5a300109aStdSig\ type bigWig 0.040000 20446.599609\ wgEncodeCshlLongRnaSeqH1hescCytosolLongnonpolyaAlnRep2 H1hSC cyt pA- A 2 bam H1-hESC cytosol polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 73 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC cytosol polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel H1hSC cyt pA- A 2\ subGroups view=Alignments cellType=t1H1HESC localization=CYTOSOL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescCytosolLongnonpolyaAlnRep2\ type bam\ wgEncodeUwDgfHcmHotspots HCM Hot broadPeak HCM DNaseI DGF Hotspots from ENCODE/UW 0 73 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HCM Hot\ subGroups view=Hotspots cellType=t3HCM treatment=aNONE rep=rep1\ track wgEncodeUwDgfHcmHotspots\ type broadPeak\ wgEncodeUwAffyExonArrayHeeSimpleSignalRep1 HEEpiC 1 broadPeak HEEpiC Exon array Signal Rep 1 from ENCODE/UW 0 73 0 0 0 127 127 127 0 0 0 expression 1 longLabel HEEpiC Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HEEpiC 1\ subGroups cellType=t3HEEPIC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHeeSimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethylRrbsHek293StanfordSitesRep1 HEK293 St 1 bed 9 + HEK293 St Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 73 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 St Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HEK293 St 1\ subGroups cellType=t3HEK293 obtainedBy=Stanford treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHek293StanfordSitesRep1\ type bed 9 +\ wgEncodeUwHistoneHelas3H3k36me3StdPkRep2 HeLa H3K36M3 Pk 2 narrowPeak HeLa-S3 H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 73 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HeLa H3K36M3 Pk 2\ subGroups view=Peaks factor=H3K36ME3 cellType=t2HELAS3 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k36me3StdPkRep2\ type narrowPeak\ wgEncodeCaltechRnaSeqHepg2R2x75Il200SplicesRep1V2 HepG 2x75 Sp 1 bam HepG2 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 73 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel HepG 2x75 Sp 1\ subGroups view=Splices cellType=t2HEPG2 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHepg2R2x75Il200SplicesRep1V2\ type bam\ wgEncodeGisRnaPetHepg2CytosolPapAlnRep1 HepG cyto pA+ A 1 bam HepG2 cytosol polyA+ clone-based RNA PET Alignments Rep 1 from ENCODE/GIS 0 73 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 cytosol polyA+ clone-based RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel HepG cyto pA+ A 1\ subGroups view=v3Alignments cellType=bHEPG2 cloned=Based localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHepg2CytosolPapAlnRep1\ type bam\ wgEncodeAwgDnaseUwHreUniPk HRE DNase narrowPeak HRE DNaseI HS Uniform Peaks from ENCODE/Analysis 1 73 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HRE DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HRE DNase\ subGroups tier=a30 cellType=HRE\ track wgEncodeAwgDnaseUwHreUniPk\ wgEncodeRikenCageK562NucleoplasmTotalPlusSignal K562 nplm tot + 1 bigWig 0.040000 4464.319824 K562 nucleoplasm total CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 73 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleoplasm total CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel K562 nplm tot + 1\ subGroups view=PlusRawSignal cellType=t1K562 localization=nucleoplasm rnaExtract=total rep=rep0 rank=rank1\ track wgEncodeRikenCageK562NucleoplasmTotalPlusSignal\ type bigWig 0.040000 4464.319824\ wgEncodeOpenChromChipMcf7CmycSerumstimPkRep1 MCF-7 cMyc stm Pk narrowPeak MCF-7 serum stim cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 73 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 serum stim cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel MCF-7 cMyc stm Pk\ subGroups view=Peaks factor=CMYC cellType=t2MCF7 treatment=SERUMSTIM\ track wgEncodeOpenChromChipMcf7CmycSerumstimPkRep1\ type narrowPeak\ wgEncodeUwDnaseMcf7Est100nm1hRawRep2 MCF7 Est1h Sg 2 bigWig 1.000000 125232.000000 MCF-7 Estradiol 100 nM 1 hr DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 73 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Estradiol 100 nM 1 hr DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel MCF7 Est1h Sg 2\ subGroups view=zRSig cellType=t2MCF7 treatment=EST100NM1H rep=rep2\ track wgEncodeUwDnaseMcf7Est100nm1hRawRep2\ type bigWig 1.000000 125232.000000\ wgEncodeOpenChromFaireMedulloPk Medullo FAIRE Pk narrowPeak Medullo FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 73 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Medullo FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel Medullo FAIRE Pk\ subGroups view=Peaks cellType=t3MEDULLO treatment=AANONE\ track wgEncodeOpenChromFaireMedulloPk\ type narrowPeak\ wgEncodeHaibGenotypeOvcar3RegionsRep1 Ovcar-3 1 bed 9 + Ovcar-3 Copy number variants Replicate 1 from ENCODE/HAIB 0 73 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Ovcar-3 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel Ovcar-3 1\ subGroups cellType=t3OVCAR3 obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeOvcar3RegionsRep1\ type bed 9 +\ wgEncodeUwRepliSeqSknshS2PctSignalRep1 SK-N-SH S2 1 bigWig 1.000000 100.000000 SK-N-SH S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 73 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel SK-N-SH S2 1\ subGroups view=v1PctSignal cellType=t2SKNSH phase=p3S2 rep=rep1\ track wgEncodeUwRepliSeqSknshS2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeHaibRnaSeqT47dEstradia4hRawRep1 T-47D EST 1 bigWig 0.271642 1572.939941 T-47D ESTRADIOL 4 hr 10 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 73 0 0 0 127 127 127 0 0 0 expression 0 longLabel T-47D ESTRADIOL 4 hr 10 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel T-47D EST 1\ subGroups view=RawSignal cellType=t3T47D treatment=EST10NM4H rep=rep1\ track wgEncodeHaibRnaSeqT47dEstradia4hRawRep1\ type bigWig 0.271642 1572.939941\ wgEncodeCshlShortRnaSeqA549CellContigs A549 cell C bed 6 A549 whole cell small RNA-seq Contigs from ENCODE/CSHL 2 74 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel A549 cell C\ subGroups view=Contigs rep=Pooled cellType=t2A549 localization=CELL protocol=NONE rank=none\ track wgEncodeCshlShortRnaSeqA549CellContigs\ type bed 6\ wgEncodeUwTfbsAg09319CtcfStdHotspotsRep1 AG19 CTCF Ht 1 broadPeak AG09319 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 74 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09319 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel AG19 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3AG09319 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg09319CtcfStdHotspotsRep1\ type broadPeak\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_ctss_rev AorticSmsToIL1b_00hr45minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_reverse 0 74 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep3%20%28LK42%29.CNhs13580.12851-137C7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12851-137C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_tpm_rev AorticSmsToIL1b_00hr45minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_reverse 1 74 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep3%20%28LK42%29.CNhs13580.12851-137C7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12851-137C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseAdultcd4th1Sig CD4+ Th1 DS bigWig 0.000000 2.975700 Adult CD4+ Th1 DNaseI HS Density Signal from ENCODE/Duke 2 74 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Adult CD4+ Th1 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel CD4+ Th1 DS\ subGroups view=SIG cellType=t3ADULTCD4TH1 treatment=zNONE\ track wgEncodeOpenChromDnaseAdultcd4th1Sig\ type bigWig 0.000000 2.975700\ pgNA20850indel GIH NA20850 indel pgSnp GIH NA20850 indel (Complete Genomics) 0 74 0 0 0 127 127 127 0 0 0 varRep 1 longLabel GIH NA20850 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel GIH NA20850 indel\ subGroups view=C_CG id=CD_div_GS20850 type=Indel\ track pgNA20850indel\ encTfChipPkENCFF132AJR GM12865 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12865 from ENCODE 3 (ENCFF132AJR) 1 74 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12865 from ENCODE 3 (ENCFF132AJR)\ parent encTfChipPk off\ shortLabel GM12865 CTCF\ subGroups cellType=GM12865 factor=CTCF\ track encTfChipPkENCFF132AJR\ wgEncodeAwgTfbsSydhGm12878Stat3IggmusUniPk GM12878 STAT3 narrowPeak GM12878 TFBS Uniform Peaks of STAT3 from ENCODE/Stanford/Analysis 1 74 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of STAT3 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 STAT3\ subGroups tier=a10 cellType=a10GM12878 factor=STAT3 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Stat3IggmusUniPk\ wgEncodeDukeAffyExonGm18507SimpleSignalRep1V2 GM18507 1 bigBed 6 + GM18507 Exon array Signal Rep 1 from ENCODE/Duke 0 74 0 0 0 127 127 127 1 0 0 expression 1 longLabel GM18507 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel GM18507 1\ subGroups cellType=t3GM18507 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonGm18507SimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeHaibTfbsGm12878Mta3sc81325V0422111RawRep2 GM78 MTA3 V11 2 bigWig 0.124979 102.202003 GM12878 MTA3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 74 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 MTA3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 MTA3 V11 2\ subGroups view=RawSignal factor=MTA3SC81325 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Mta3sc81325V0422111RawRep2\ type bigWig 0.124979 102.202003\ wgEncodeSydhTfbsGm12878Smc3ab9263IggmusSig GM78 SMC3 IgM bigWig 1.000000 13469.000000 GM12878 SMC3 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 74 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 SMC3 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 SMC3 IgM\ subGroups view=Signal factor=SMC3ab9263 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Smc3ab9263IggmusSig\ type bigWig 1.000000 13469.000000\ wgEncodeBroadHistoneH1hescSap3039731Pk H1-hESC SAP30 broadPeak H1-hESC SAP30 (39731) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 74 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC SAP30 (39731) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC SAP30\ subGroups view=Peaks factor=SAP3039731 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescSap3039731Pk\ type broadPeak\ wgEncodeCshlLongRnaSeqH1hescCytosolPamContigsV2 H1hSC cyt pA- C bed 6 + H1-hESC cytosol polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 74 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC cytosol polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel H1hSC cyt pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1H1HESC localization=CYTOSOL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqH1hescCytosolPamContigsV2\ type bed 6 +\ wgEncodeUwDgfHcmPk HCM Pk narrowPeak HCM DNaseI DGF Peaks from ENCODE/UW 0 74 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HCM Pk\ subGroups view=Peaks cellType=t3HCM treatment=aNONE rep=rep1\ track wgEncodeUwDgfHcmPk\ type narrowPeak\ wgEncodeUwAffyExonArrayHeeSimpleSignalRep2 HEEpiC 2 broadPeak HEEpiC Exon array Signal Rep 2 from ENCODE/UW 0 74 0 0 0 127 127 127 0 0 0 expression 1 longLabel HEEpiC Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HEEpiC 2\ subGroups cellType=t3HEEPIC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHeeSimpleSignalRep2\ type broadPeak\ wgEncodeHaibMethylRrbsHek293UwSitesRep1 HEK293 UW 1 bed 9 + HEK293 UW Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 74 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 UW Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HEK293 UW 1\ subGroups cellType=t3HEK293 obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHek293UwSitesRep1\ type bed 9 +\ wgEncodeUwHistoneHelas3H3k36me3StdRawRep2 HeLa H3K36M3 Sg 2 bigWig 1.000000 8774.000000 HeLa-S3 H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 74 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HeLa H3K36M3 Sg 2\ subGroups view=zRSig factor=H3K36ME3 cellType=t2HELAS3 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHelas3H3k36me3StdRawRep2\ type bigWig 1.000000 8774.000000\ wgEncodeCaltechRnaSeqHepg2R2x75Il200SplicesRep2V2 HepG 2x75 Sp 2 bam HepG2 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 74 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel HepG 2x75 Sp 2\ subGroups view=Splices cellType=t2HEPG2 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHepg2R2x75Il200SplicesRep2V2\ type bam\ wgEncodeGisRnaPetHepg2NucleusPapClustersRep1 HepG nucl pA+ 1 bed 6 + HepG2 nucleus polyA+ clone-based RNA PET Clusters Rep 1 from ENCODE/GIS 2 74 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleus polyA+ clone-based RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel HepG nucl pA+ 1\ subGroups view=v1Clusters cellType=bHEPG2 cloned=Based localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHepg2NucleusPapClustersRep1\ type bed 6 +\ wgEncodeAwgDnaseUwHrgecUniPk HRGEC DNase narrowPeak HRGEC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 74 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HRGEC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HRGEC DNase\ subGroups tier=a30 cellType=HRGEC\ track wgEncodeAwgDnaseUwHrgecUniPk\ wgEncodeRikenCageK562NucleoplasmTotalMinusSignal K562 nplm tot - 1 bigWig 0.040000 4464.319824 K562 nucleoplasm total CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 74 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleoplasm total CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel K562 nplm tot - 1\ subGroups view=MinusRawSignal cellType=t1K562 localization=nucleoplasm rnaExtract=total rep=rep0 rank=rank1\ track wgEncodeRikenCageK562NucleoplasmTotalMinusSignal\ type bigWig 0.040000 4464.319824\ wgEncodeOpenChromChipMcf7CmycSerumstimSig MCF-7 cMyc stm DS bigWig 0.000000 4.694000 MCF-7 serum stim cMyc TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 74 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 serum stim cMyc TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel MCF-7 cMyc stm DS\ subGroups view=SIG factor=CMYC cellType=t2MCF7 treatment=SERUMSTIM\ track wgEncodeOpenChromChipMcf7CmycSerumstimSig\ type bigWig 0.000000 4.694000\ wgEncodeUwDnaseMcf7Estctrl0hRawRep2 MCF7 EstCtrl Sg 2 bigWig 1.000000 138143.000000 MCF-7 Estradiol Control 0 hr DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 74 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Estradiol Control 0 hr DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel MCF7 EstCtrl Sg 2\ subGroups view=zRSig cellType=t2MCF7 treatment=ESTCTRL0H rep=rep2\ track wgEncodeUwDnaseMcf7Estctrl0hRawRep2\ type bigWig 1.000000 138143.000000\ wgEncodeOpenChromFaireMedulloSig Medullo FAIRE DS bigWig 0.000000 0.433400 Medullo FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 74 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Medullo FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel Medullo FAIRE DS\ subGroups view=SIG cellType=t3MEDULLO treatment=AANONE\ track wgEncodeOpenChromFaireMedulloSig\ type bigWig 0.000000 0.433400\ wgEncodeHaibGenotypePanc1RegionsRep1 PANC-1 1 bed 9 + PANC-1 Copy number variants Replicate 1 from ENCODE/HAIB 0 74 0 0 0 127 127 127 0 0 0 varRep 1 longLabel PANC-1 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel PANC-1 1\ subGroups cellType=t3PANC1 obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypePanc1RegionsRep1\ type bed 9 +\ wgEncodeUwRepliSeqSknshS3PctSignalRep1 SK-N-SH S3 1 bigWig 1.000000 100.000000 SK-N-SH S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 74 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel SK-N-SH S3 1\ subGroups view=v1PctSignal cellType=t2SKNSH phase=p4S3 rep=rep1\ track wgEncodeUwRepliSeqSknshS3PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeHaibRnaSeqT47dEstradia4hAlnRep1 T-47D EST 1 bam T-47D ESTRADIOL 4 hr 10 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 74 0 0 0 127 127 127 0 0 0 expression 1 longLabel T-47D ESTRADIOL 4 hr 10 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel T-47D EST 1\ subGroups view=Alignments cellType=t3T47D treatment=EST10NM4H rep=rep1\ track wgEncodeHaibRnaSeqT47dEstradia4hAlnRep1\ type bam\ wgEncodeCshlShortRnaSeqA549CellShorttotalMinusRep3 A549 cell - 1 bigWig 1.000000 14944297.000000 A549 whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 75 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel A549 cell - 1\ subGroups view=MinusSignal cellType=t2A549 localization=CELL protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqA549CellShorttotalMinusRep3\ type bigWig 1.000000 14944297.000000\ wgEncodeUwTfbsAg09319CtcfStdPkRep1 AG19 CTCF Pk 1 narrowPeak AG09319 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 75 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09319 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel AG19 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3AG09319 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg09319CtcfStdPkRep1\ type narrowPeak\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_ctss_fwd AorticSmsToIL1b_01hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_forward 0 75 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep1%20%28LK43%29.CNhs13353.12656-134I1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12656-134I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_tpm_fwd AorticSmsToIL1b_01hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_forward 1 75 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep1%20%28LK43%29.CNhs13353.12656-134I1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12656-134I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseAdultcd4th1BaseOverlapSignal CD4+ Th1 OS bigWig 0.000000 385.000000 Adult CD4+ Th1 DNaseI HS Overlap Signal from ENCODE/Duke 2 75 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Adult CD4+ Th1 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel CD4+ Th1 OS\ subGroups view=SIGBO cellType=t3ADULTCD4TH1 treatment=zNONE\ track wgEncodeOpenChromDnaseAdultcd4th1BaseOverlapSignal\ type bigWig 0.000000 385.000000\ encTfChipPkENCFF295AWO GM12873 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12873 from ENCODE 3 (ENCFF295AWO) 1 75 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12873 from ENCODE 3 (ENCFF295AWO)\ parent encTfChipPk off\ shortLabel GM12873 CTCF\ subGroups cellType=GM12873 factor=CTCF\ track encTfChipPkENCFF295AWO\ wgEncodeAwgTfbsHaibGm12878Stat5asc74442V0422111UniPk GM12878 STAT5A narrowPeak GM12878 TFBS Uniform Peaks of STAT5A_(SC-74442) from ENCODE/HudsonAlpha/Analysis 1 75 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of STAT5A_(SC-74442) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 STAT5A\ subGroups tier=a10 cellType=a10GM12878 factor=STAT5A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Stat5asc74442V0422111UniPk\ wgEncodeDukeAffyExonGm18507SimpleSignalRep2V2 GM18507 2 bigBed 6 + GM18507 Exon array Signal Rep 2 from ENCODE/Duke 0 75 0 0 0 127 127 127 1 0 0 expression 1 longLabel GM18507 Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel GM18507 2\ subGroups cellType=t3GM18507 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonGm18507SimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeHaibTfbsGm12878Nfatc1sc17834V0422111PkRep1 GM78 NFATC1 V11 1 broadPeak GM12878 NFATC1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 75 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 NFATC1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 NFATC1 V11 1\ subGroups view=Peaks factor=NFATC1SC17834 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Nfatc1sc17834V0422111PkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878Spt20StdPk GM78 SPT Std narrowPeak GM12878 SPT20 Standard ChIP-seq Peaks from ENCODE/SYDH 3 75 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 SPT20 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 SPT Std\ subGroups view=Peaks factor=SPT20 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Spt20StdPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescSap3039731Sig H1-hESC SAP30 bigWig 0.040000 329.559998 H1-hESC SAP30 (39731) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 75 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC SAP30 (39731) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC SAP30\ subGroups view=Signal factor=SAP3039731 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescSap3039731Sig\ type bigWig 0.040000 329.559998\ wgEncodeCshlLongRnaSeqH1hescCytosolPamJunctions H1hSC cyt pA- J bed 6 + H1-hESC cytosol polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 75 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC cytosol polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel H1hSC cyt pA- J\ subGroups view=Junctions cellType=t1H1HESC localization=CYTOSOL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqH1hescCytosolPamJunctions\ type bed 6 +\ wgEncodeUwDgfHcmSig HCM Sig bigWig 1.000000 45232.000000 HCM DNaseI DGF Per-base Signal from ENCODE/UW 2 75 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCM DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HCM Sig\ subGroups view=Signal cellType=t3HCM treatment=aNONE rep=rep1\ track wgEncodeUwDgfHcmSig\ type bigWig 1.000000 45232.000000\ wgEncodeUwAffyExonArrayHek293SimpleSignalRep1 HEK293 1 broadPeak HEK293 Exon array Signal Rep 1 from ENCODE/UW 0 75 0 0 0 127 127 127 0 0 0 expression 1 longLabel HEK293 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HEK293 1\ subGroups cellType=t3HEK293 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHek293SimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethylRrbsHek293StanfordSitesRep2 HEK293 St 2 bed 9 + HEK293 St Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 75 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 St Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HEK293 St 2\ subGroups cellType=t3HEK293 obtainedBy=Stanford treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHek293StanfordSitesRep2\ type bed 9 +\ wgEncodeUwHistoneHelas3InputStdRawRep1 HeLa In Sg 1 bigWig 1.000000 10388.000000 HeLa-S3 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 75 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HeLa In Sg 1\ subGroups view=zRSig factor=zInput cellType=t2HELAS3 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHelas3InputStdRawRep1\ type bigWig 1.000000 10388.000000\ wgEncodeCaltechRnaSeqHepg2R1x75dAlignsRep1V3 HepG 1x75D A 1 bam HepG2 single read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 75 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 single read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel HepG 1x75D A 1\ subGroups view=Aligns cellType=t2HEPG2 insertLength=ilNa readType=r1x75D rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHepg2R1x75dAlignsRep1V3\ type bam\ wgEncodeGisRnaPetHepg2NucleusPapMinusRawSigRep1 HepG nucl pA+ - 1 bigWig 1.000000 105811.000000 HepG2 nucleus polyA+ clone-based RNA PET Minus signal Rep 1 from ENCODE/GIS 2 75 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleus polyA+ clone-based RNA PET Minus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel HepG nucl pA+ - 1\ subGroups view=v2MinusRawSignal cellType=bHEPG2 cloned=Based localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHepg2NucleusPapMinusRawSigRep1\ type bigWig 1.000000 105811.000000\ wgEncodeAwgDnaseUwHrpepicUniPk HRPEpiC DNase narrowPeak HRPEpiC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 75 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HRPEpiC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HRPEpiC DNase\ subGroups tier=a30 cellType=HRPEpiC\ track wgEncodeAwgDnaseUwHrpepicUniPk\ pgNA18940 JPT NA18940 pgSnp JPT NA18940 (Complete Genomics) 0 75 0 0 0 127 127 127 0 0 0 varRep 1 longLabel JPT NA18940 (Complete Genomics)\ parent pgSnpCg\ shortLabel JPT NA18940\ subGroups view=C_CG id=CE_div_GS18940 type=SNP\ track pgNA18940\ wgEncodeRikenCageK562NucleoplasmTotalAln K562 nplm tot A 1 bam K562 nucleoplasm total CAGE Alignments Rep 1 from ENCODE/RIKEN 0 75 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleoplasm total CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel K562 nplm tot A 1\ subGroups view=Alignments cellType=t1K562 localization=nucleoplasm rnaExtract=total rep=rep0 rank=rank1\ track wgEncodeRikenCageK562NucleoplasmTotalAln\ type bam\ wgEncodeOpenChromChipMcf7CmycSerumstimBaseOverlapSignal MCF-7 cMyc stm OS bigWig 0.000000 4340.000000 MCF-7 serum stim cMyc TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 75 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 serum stim cMyc TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel MCF-7 cMyc stm OS\ subGroups view=SIGBO factor=CMYC cellType=t2MCF7 treatment=SERUMSTIM\ track wgEncodeOpenChromChipMcf7CmycSerumstimBaseOverlapSignal\ type bigWig 0.000000 4340.000000\ wgEncodeUwDnaseMcf7RawRep2 MCF7 Sg 2 bigWig 1.000000 69705.000000 MCF-7 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 75 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel MCF7 Sg 2\ subGroups view=zRSig cellType=t2MCF7 rep=rep2 treatment=None\ track wgEncodeUwDnaseMcf7RawRep2\ type bigWig 1.000000 69705.000000\ wgEncodeOpenChromFaireMedulloBaseOverlapSignal Medullo FAIRE OS bigWig 0.000000 3221.000000 Medullo FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 75 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Medullo FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel Medullo FAIRE OS\ subGroups view=SIGBO cellType=t3MEDULLO treatment=AANONE\ track wgEncodeOpenChromFaireMedulloBaseOverlapSignal\ type bigWig 0.000000 3221.000000\ wgEncodeHaibGenotypePanc1RegionsRep2 PANC-1 2 bed 9 + PANC-1 Copy number variants Replicate 2 from ENCODE/HAIB 0 75 0 0 0 127 127 127 0 0 0 varRep 1 longLabel PANC-1 Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel PANC-1 2\ subGroups cellType=t3PANC1 obtainedBy=HudsonAlpha treatment=None rep=rep2\ track wgEncodeHaibGenotypePanc1RegionsRep2\ type bed 9 +\ wgEncodeUwRepliSeqSknshS4PctSignalRep1 SK-N-SH S4 1 bigWig 1.000000 100.000000 SK-N-SH S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 75 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel SK-N-SH S4 1\ subGroups view=v1PctSignal cellType=t2SKNSH phase=p5S4 rep=rep1\ track wgEncodeUwRepliSeqSknshS4PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeHaibRnaSeqT47dEstradia4hRawRep2 T-47D EST 2 bigWig 0.090113 781.908997 T-47D ESTRADIOL 4 hr 10 nM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 75 0 0 0 127 127 127 0 0 0 expression 0 longLabel T-47D ESTRADIOL 4 hr 10 nM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel T-47D EST 2\ subGroups view=RawSignal cellType=t3T47D treatment=EST10NM4H rep=rep2\ track wgEncodeHaibRnaSeqT47dEstradia4hRawRep2\ type bigWig 0.090113 781.908997\ wgEncodeCshlShortRnaSeqA549CellShorttotalMinusRep4 A549 cell - 2 bigWig 1.000000 13048663.000000 A549 whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 76 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel A549 cell - 2\ subGroups view=MinusSignal cellType=t2A549 localization=CELL protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqA549CellShorttotalMinusRep4\ type bigWig 1.000000 13048663.000000\ wgEncodeUwTfbsAg09319CtcfStdRawRep1 AG19 CTCF Sg 1 bigWig 1.000000 11837.000000 AG09319 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 76 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG09319 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AG19 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3AG09319 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg09319CtcfStdRawRep1\ type bigWig 1.000000 11837.000000\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_ctss_rev AorticSmsToIL1b_01hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_reverse 0 76 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep1%20%28LK43%29.CNhs13353.12656-134I1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12656-134I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_tpm_rev AorticSmsToIL1b_01hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_reverse 1 76 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep1%20%28LK43%29.CNhs13353.12656-134I1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12656-134I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseAosmcSerumfreePk AoSMC Srm Free Pk narrowPeak AoSMC Serum Free Media DNaseI HS Peaks from ENCODE/Duke 3 76 0 0 0 127 127 127 1 0 0 regulation 1 longLabel AoSMC Serum Free Media DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel AoSMC Srm Free Pk\ subGroups view=Peaks cellType=t3AOSMC treatment=SERUMFREE\ track wgEncodeOpenChromDnaseAosmcSerumfreePk\ type narrowPeak\ wgEncodeUwDnaseMonocd14ro1746HotspotsRep2 CD14+ Mono Ht 2 broadPeak Monocytes CD14+ RO01746 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 76 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Monocytes CD14+ RO01746 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel CD14+ Mono Ht 2\ subGroups view=Hot cellType=t2MONOCYTESCD14RO01746 rep=rep2 treatment=None\ track wgEncodeUwDnaseMonocd14ro1746HotspotsRep2\ type broadPeak\ encTfChipPkENCFF446MKT GM12874 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12874 from ENCODE 3 (ENCFF446MKT) 1 76 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12874 from ENCODE 3 (ENCFF446MKT)\ parent encTfChipPk off\ shortLabel GM12874 CTCF\ subGroups cellType=GM12874 factor=CTCF\ track encTfChipPkENCFF446MKT\ wgEncodeAwgTfbsHaibGm12878Taf1Pcr1xUniPk GM12878 TAF1 narrowPeak GM12878 TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis 1 76 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 TAF1\ subGroups tier=a10 cellType=a10GM12878 factor=TAF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Taf1Pcr1xUniPk\ wgEncodeDukeAffyExonGm18507SimpleSignalRep3V2 GM18507 3 bigBed 6 + GM18507 Exon array Signal Rep 3 from ENCODE/Duke 0 76 0 0 0 127 127 127 1 0 0 expression 1 longLabel GM18507 Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel GM18507 3\ subGroups cellType=t3GM18507 treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonGm18507SimpleSignalRep3V2\ type bigBed 6 +\ wgEncodeHaibTfbsGm12878Nfatc1sc17834V0422111RawRep1 GM78 NFATC1 V11 1 bigWig 0.134567 119.528999 GM12878 NFATC1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 76 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 NFATC1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 NFATC1 V11 1\ subGroups view=RawSignal factor=NFATC1SC17834 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Nfatc1sc17834V0422111RawRep1\ type bigWig 0.134567 119.528999\ wgEncodeSydhTfbsGm12878Spt20StdSig GM78 SPT Std bigWig 1.000000 279087.000000 GM12878 SPT20 Standard ChIP-seq Signal from ENCODE/SYDH 2 76 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 SPT20 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 SPT Std\ subGroups view=Signal factor=SPT20 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Spt20StdSig\ type bigWig 1.000000 279087.000000\ wgEncodeBroadHistoneH1hescSirt6Pk H1-hESC SIRT6 broadPeak H1-hESC SIRT6 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 76 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC SIRT6 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC SIRT6\ subGroups view=Peaks factor=SIRT6 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescSirt6Pk\ type broadPeak\ wgEncodeCshlLongRnaSeqH1hescCytosolLongnonpolyaMinusRawSigRep2 H1hSC cyt pA- - 2 bigWig 1.000000 4084665.000000 H1-hESC cytosol polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 76 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC cytosol polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel H1hSC cyt pA- - 2\ subGroups view=MinusSignal cellType=t1H1HESC localization=CYTOSOL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescCytosolLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 4084665.000000\ wgEncodeUwDgfHcmRaw HCM Raw bigWig 1.000000 290539.000000 HCM DNaseI DGF Raw Signal from ENCODE/UW 0 76 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCM DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HCM Raw\ subGroups view=zRaw cellType=t3HCM treatment=aNONE rep=rep1\ track wgEncodeUwDgfHcmRaw\ type bigWig 1.000000 290539.000000\ wgEncodeUwAffyExonArrayHek293SimpleSignalRep2 HEK293 2 broadPeak HEK293 Exon array Signal Rep 2 from ENCODE/UW 0 76 0 0 0 127 127 127 0 0 0 expression 1 longLabel HEK293 Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HEK293 2\ subGroups cellType=t3HEK293 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHek293SimpleSignalRep2\ type broadPeak\ wgEncodeHaibMethylRrbsHek293UwSitesRep2 HEK293 UW 2 bed 9 + HEK293 UW Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 76 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 UW Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HEK293 UW 2\ subGroups cellType=t3HEK293 obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHek293UwSitesRep2\ type bed 9 +\ wgEncodeCaltechRnaSeqHepg2R1x75dAlignsRep2V3 HepG 1x75D A 2 bam HepG2 single read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 76 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 single read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel HepG 1x75D A 2\ subGroups view=Aligns cellType=t2HEPG2 insertLength=ilNa readType=r1x75D rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHepg2R1x75dAlignsRep2V3\ type bam\ wgEncodeUwHistoneHepg2H3k4me3StdHotspotsRep1 HepG H3K4M3 Ht 1 broadPeak HepG2 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 76 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HepG H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t2HEPG2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeGisRnaPetHepg2NucleusPapPlusRawSigRep1 HepG nucl pA+ + 1 bigWig 1.000000 101038.000000 HepG2 nucleus polyA+ clone-based RNA PET Plus signal Rep 1 from ENCODE/GIS 2 76 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleus polyA+ clone-based RNA PET Plus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel HepG nucl pA+ + 1\ subGroups view=v2PlusRawSignal cellType=bHEPG2 cloned=Based localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHepg2NucleusPapPlusRawSigRep1\ type bigWig 1.000000 101038.000000\ wgEncodeAwgDnaseUwdukeHsmmUniPk HSMM DNase narrowPeak HSMM DNaseI HS Uniform Peaks from ENCODE/Analysis 1 76 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HSMM DNase\ subGroups tier=a30 cellType=HSMM\ track wgEncodeAwgDnaseUwdukeHsmmUniPk\ pgNA18940indel JPT NA18940 indel pgSnp JPT NA18940 indel (Complete Genomics) 0 76 0 0 0 127 127 127 0 0 0 varRep 1 longLabel JPT NA18940 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel JPT NA18940 indel\ subGroups view=C_CG id=CE_div_GS18940 type=Indel\ track pgNA18940indel\ wgEncodeRikenCageK562NucleusPamTssHmmV2 K562 nucl pA- bed 6 K562 nucleus polyA- CAGE TSS HMM from ENCODE/RIKEN 3 76 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleus polyA- CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm on\ shortLabel K562 nucl pA-\ subGroups view=TssHmm cellType=t1K562 localization=nucleus rnaExtract=pAM rep=rep0 rank=rankP\ track wgEncodeRikenCageK562NucleusPamTssHmmV2\ type bed 6\ wgEncodeOpenChromChipMcf7CmycVehPkRep1 MCF-7 veh cMyc Pk narrowPeak MCF-7 vehicle cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 76 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 vehicle cMyc TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel MCF-7 veh cMyc Pk\ subGroups treatment=VEH view=Peaks factor=CMYC cellType=t2MCF7\ track wgEncodeOpenChromChipMcf7CmycVehPkRep1\ type narrowPeak\ wgEncodeOpenChromFaireMrta2041Pk MRT A204.1 F Pk narrowPeak MRT A204.1 FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 76 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MRT A204.1 FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel MRT A204.1 F Pk\ subGroups view=Peaks cellType=t3MRTA204 treatment=AANONE\ track wgEncodeOpenChromFaireMrta2041Pk\ type narrowPeak\ wgEncodeHaibGenotypePfsk1RegionsRep1 PFSK-1 1 bed 9 + PFSK-1 Copy number variants Replicate 1 from ENCODE/HAIB 0 76 0 0 0 127 127 127 0 0 0 varRep 1 longLabel PFSK-1 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel PFSK-1 1\ subGroups cellType=t3PFSK1 obtainedBy=HudsonAlpha treatment=None rep=rep1\ track wgEncodeHaibGenotypePfsk1RegionsRep1\ type bed 9 +\ wgEncodeUwRepliSeqSknshG2PctSignalRep1 SK-N-SH G2 1 bigWig 1.000000 100.000000 SK-N-SH G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 76 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel SK-N-SH G2 1\ subGroups view=v1PctSignal cellType=t2SKNSH phase=p6G2 rep=rep1\ track wgEncodeUwRepliSeqSknshG2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeHaibRnaSeqT47dEstradia4hAlnRep2 T-47D EST 2 bam T-47D ESTRADIOL 4 hr 10 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 76 0 0 0 127 127 127 0 0 0 expression 1 longLabel T-47D ESTRADIOL 4 hr 10 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel T-47D EST 2\ subGroups view=Alignments cellType=t3T47D treatment=EST10NM4H rep=rep2\ track wgEncodeHaibRnaSeqT47dEstradia4hAlnRep2\ type bam\ wgEncodeCshlShortRnaSeqA549CellShorttotalPlusRep3 A549 cell + 1 bigWig 1.000000 14934186.000000 A549 whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 77 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 cell + 1\ subGroups view=PlusSignal cellType=t2A549 localization=CELL protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqA549CellShorttotalPlusRep3\ type bigWig 1.000000 14934186.000000\ wgEncodeUwTfbsAg09319CtcfStdHotspotsRep2 AG19 CTCF Ht 2 broadPeak AG09319 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 77 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09319 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel AG19 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3AG09319 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAg09319CtcfStdHotspotsRep2\ type broadPeak\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_ctss_fwd AorticSmsToIL1b_01hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_forward 0 77 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep2%20%28LK44%29.CNhs13373.12754-136A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12754-136A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_tpm_fwd AorticSmsToIL1b_01hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_forward 1 77 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep2%20%28LK44%29.CNhs13373.12754-136A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12754-136A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseAosmcSerumfreeSig AoSMC Srm Free DS bigWig 0.000000 0.726900 AoSMC Serum Free Media DNaseI HS Density Signal from ENCODE/Duke 2 77 0 0 0 127 127 127 1 0 0 regulation 0 longLabel AoSMC Serum Free Media DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel AoSMC Srm Free DS\ subGroups view=SIG cellType=t3AOSMC treatment=SERUMFREE\ track wgEncodeOpenChromDnaseAosmcSerumfreeSig\ type bigWig 0.000000 0.726900\ wgEncodeUwDnaseMonocd14ro1746PkRep2 CD14+ Mono Pk 2 narrowPeak Monocytes CD14+ RO01746 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 77 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Monocytes CD14+ RO01746 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel CD14+ Mono Pk 2\ subGroups view=Peaks cellType=t2MONOCYTESCD14RO01746 rep=rep2 treatment=None\ track wgEncodeUwDnaseMonocd14ro1746PkRep2\ type narrowPeak\ encTfChipPkENCFF733YSO GM12875 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12875 from ENCODE 3 (ENCFF733YSO) 1 77 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12875 from ENCODE 3 (ENCFF733YSO)\ parent encTfChipPk off\ shortLabel GM12875 CTCF\ subGroups cellType=GM12875 factor=CTCF\ track encTfChipPkENCFF733YSO\ wgEncodeAwgTfbsSydhGm12878Tblr1ab24550IggmusUniPk GM12878 TBL1XR1 narrowPeak GM12878 TFBS Uniform Peaks of TBLR1_(ab24550) from ENCODE/Stanford/Analysis 1 77 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of TBLR1_(ab24550) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 TBL1XR1\ subGroups tier=a10 cellType=a10GM12878 factor=TBL1XR1 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Tblr1ab24550IggmusUniPk\ wgEncodeDukeAffyExonGm19238SimpleSignalRep1V2 GM19238 1 bigBed 6 + GM19238 Exon array Signal Rep 1 from ENCODE/Duke 0 77 0 0 0 127 127 127 1 0 0 expression 1 longLabel GM19238 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel GM19238 1\ subGroups cellType=t3GM19238 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonGm19238SimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeHaibTfbsGm12878Nfatc1sc17834V0422111PkRep2 GM78 NFATC1 V11 2 broadPeak GM12878 NFATC1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 77 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 NFATC1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 NFATC1 V11 2\ subGroups view=Peaks factor=NFATC1SC17834 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Nfatc1sc17834V0422111PkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12878Srebp1IggrabPk GM78 SREBP1 IgR narrowPeak GM12878 SREBP1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 77 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 SREBP1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 SREBP1 IgR\ subGroups view=Peaks factor=SREBP1 cellType=t1GM12878 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsGm12878Srebp1IggrabPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescSirt6Sig H1-hESC SIRT6 bigWig 0.040000 397.559998 H1-hESC SIRT6 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 77 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC SIRT6 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC SIRT6\ subGroups view=Signal factor=SIRT6 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescSirt6Sig\ type bigWig 0.040000 397.559998\ wgEncodeCshlLongRnaSeqH1hescCytosolLongnonpolyaPlusRawSigRep2 H1hSC cyt pA- + 2 bigWig 1.000000 12750162.000000 H1-hESC cytosol polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 77 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC cytosol polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel H1hSC cyt pA- + 2\ subGroups view=PlusSignal cellType=t1H1HESC localization=CYTOSOL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescCytosolLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 12750162.000000\ wgEncodeUwDgfHcpeHotspots HCPEpiC Hot broadPeak HCPEpiC DNaseI DGF Hotspots from ENCODE/UW 0 77 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpiC DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HCPEpiC Hot\ subGroups view=Hotspots cellType=t3HCPEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHcpeHotspots\ type broadPeak\ wgEncodeHaibMethylRrbsHepatocytesDukeSitesRep1 Hepatocytes 1 bed 9 + Hepatocytes Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 77 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Hepatocytes Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Hepatocytes 1\ subGroups cellType=t3HEPATOCYTES obtainedBy=DUKE treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHepatocytesDukeSitesRep1\ type bed 9 +\ wgEncodeCaltechRnaSeqHepg2R1x75dTh1014UMinusRawRep1V4 HepG 1x75D - 1 bigWig -123468.328125 -0.003000 HepG2 single read RNA-seq Minus Signal Rep 1 from ENCODE/Caltech 2 77 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 single read RNA-seq Minus Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewMinusSignal off\ shortLabel HepG 1x75D - 1\ subGroups view=MinusSignal cellType=t2HEPG2 readType=r1x75D insertLength=ilNa rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHepg2R1x75dTh1014UMinusRawRep1V4\ type bigWig -123468.328125 -0.003000\ wgEncodeUwHistoneHepg2H3k4me3StdPkRep1 HepG H3K4M3 Pk 1 narrowPeak HepG2 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 77 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HepG H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t2HEPG2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k4me3StdPkRep1\ type narrowPeak\ wgEncodeGisRnaPetHepg2NucleusPapAlnRep1 HepG nucl pA+ A 1 bam HepG2 nucleus polyA+ clone-based RNA PET Alignments Rep 1 from ENCODE/GIS 0 77 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleus polyA+ clone-based RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel HepG nucl pA+ A 1\ subGroups view=v3Alignments cellType=bHEPG2 cloned=Based localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHepg2NucleusPapAlnRep1\ type bam\ wgEncodeUwAffyExonArrayHffSimpleSignalRep1 HFF 1 broadPeak HFF Exon-array Signal Rep 1 from ENCODE/UW 0 77 0 0 0 127 127 127 0 0 0 expression 1 longLabel HFF Exon-array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HFF 1\ subGroups cellType=t3HFF rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHffSimpleSignalRep1\ type broadPeak\ wgEncodeAwgDnaseDukeHsmmembUniPk HSMM_emb DNase narrowPeak HSMM_emb DNaseI HS Uniform Peaks from ENCODE/Analysis 1 77 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM_emb DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HSMM_emb DNase\ subGroups tier=a30 cellType=HSMM_emb\ track wgEncodeAwgDnaseDukeHsmmembUniPk\ pgNA18942 JPT NA18942 pgSnp JPT NA18942 (Complete Genomics) 0 77 0 0 0 127 127 127 0 0 0 varRep 1 longLabel JPT NA18942 (Complete Genomics)\ parent pgSnpCg\ shortLabel JPT NA18942\ subGroups view=C_CG id=CE_div_GS18942 type=SNP\ track pgNA18942\ wgEncodeRikenCageK562NucleusPamPlusSignal K562 nucl pA- + 1 bigWig 0.040000 4464.319824 K562 nucleus polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 77 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleus polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal on\ shortLabel K562 nucl pA- + 1\ subGroups view=PlusRawSignal cellType=t1K562 localization=nucleus rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageK562NucleusPamPlusSignal\ type bigWig 0.040000 4464.319824\ wgEncodeOpenChromChipMcf7CmycVehSig MCF-7 veh cMyc DS bigWig 0.000000 3.484600 MCF-7 vehicle cMyc TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 77 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 vehicle cMyc TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel MCF-7 veh cMyc DS\ subGroups treatment=VEH view=SIG factor=CMYC cellType=t2MCF7\ track wgEncodeOpenChromChipMcf7CmycVehSig\ type bigWig 0.000000 3.484600\ wgEncodeOpenChromFaireMrta2041Sig MRT A204.1 F DS bigWig 0.000000 0.650900 MRT A204.1 FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 77 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MRT A204.1 FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel MRT A204.1 F DS\ subGroups view=SIG cellType=t3MRTA204 treatment=AANONE\ track wgEncodeOpenChromFaireMrta2041Sig\ type bigWig 0.000000 0.650900\ wgEncodeHaibGenotypePrecRegionsRep1 PrEC 1 bed 9 + PrEC Copy number variants Replicate 1 from ENCODE/HAIB 0 77 0 0 0 127 127 127 0 0 0 varRep 1 longLabel PrEC Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel PrEC 1\ subGroups cellType=t3PREC obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypePrecRegionsRep1\ type bed 9 +\ wgEncodeUwRepliSeqSknshPkRep1 SK-N-SH Pk 1 bed 9 SK-N-SH Repli-seq Peaks Rep 1 from ENCODE/UW 0 77 0 0 0 127 127 127 1 0 0 regulation 1 longLabel SK-N-SH Repli-seq Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPeaks off\ shortLabel SK-N-SH Pk 1\ subGroups view=v2Peaks cellType=t2SKNSH phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqSknshPkRep1\ type bed 9\ wgEncodeHaibRnaSeqT47dGen4hRawRep1 T-47D GEN 1 bigWig 0.256140 872.221008 T-47D GENISTEIN 4 hr 100 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 77 0 0 0 127 127 127 0 0 0 expression 0 longLabel T-47D GENISTEIN 4 hr 100 nM RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel T-47D GEN 1\ subGroups view=RawSignal cellType=t3T47D treatment=GEN4H rep=rep1\ track wgEncodeHaibRnaSeqT47dGen4hRawRep1\ type bigWig 0.256140 872.221008\ wgEncodeCshlShortRnaSeqA549CellShorttotalPlusRep4 A549 cell + 2 bigWig 1.000000 9095308.000000 A549 whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 78 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 cell + 2\ subGroups view=PlusSignal cellType=t2A549 localization=CELL protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqA549CellShorttotalPlusRep4\ type bigWig 1.000000 9095308.000000\ wgEncodeUwTfbsAg09319CtcfStdPkRep2 AG19 CTCF Pk 2 narrowPeak AG09319 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 78 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09319 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel AG19 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3AG09319 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAg09319CtcfStdPkRep2\ type narrowPeak\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_ctss_rev AorticSmsToIL1b_01hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_reverse 0 78 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep2%20%28LK44%29.CNhs13373.12754-136A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12754-136A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_tpm_rev AorticSmsToIL1b_01hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_reverse 1 78 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep2%20%28LK44%29.CNhs13373.12754-136A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12754-136A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseAosmcSerumfreeBaseOverlapSignal AoSMC Srm Free OS bigWig 0.000000 151.000000 AoSMC Serum Free Media DNaseI HS Overlap Signal from ENCODE/Duke 2 78 0 0 0 127 127 127 1 0 0 regulation 0 longLabel AoSMC Serum Free Media DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel AoSMC Srm Free OS\ subGroups view=SIGBO cellType=t3AOSMC treatment=SERUMFREE\ track wgEncodeOpenChromDnaseAosmcSerumfreeBaseOverlapSignal\ type bigWig 0.000000 151.000000\ wgEncodeUwDnaseMonocd14ro1746RawRep2 CD14+ Mono Sg 2 bigWig 1.000000 36131.000000 Monocytes CD14+ RO01746 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 78 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Monocytes CD14+ RO01746 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel CD14+ Mono Sg 2\ subGroups view=zRSig cellType=t2MONOCYTESCD14RO01746 rep=rep2 treatment=None\ track wgEncodeUwDnaseMonocd14ro1746RawRep2\ type bigWig 1.000000 36131.000000\ encTfChipPkENCFF027VZK GM12878 ARID3A narrowPeak Transcription Factor ChIP-seq Peaks of ARID3A in GM12878 from ENCODE 3 (ENCFF027VZK) 1 78 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ARID3A in GM12878 from ENCODE 3 (ENCFF027VZK)\ parent encTfChipPk off\ shortLabel GM12878 ARID3A\ subGroups cellType=GM12878 factor=ARID3A\ track encTfChipPkENCFF027VZK\ wgEncodeAwgTfbsSydhGm12878TbpIggmusUniPk GM12878 TBP narrowPeak GM12878 TFBS Uniform Peaks of TBP from ENCODE/Stanford/Analysis 1 78 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of TBP from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 TBP\ subGroups tier=a10 cellType=a10GM12878 factor=TBP lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878TbpIggmusUniPk\ wgEncodeDukeAffyExonGm19238SimpleSignalRep2V2 GM19238 2 bigBed 6 + GM19238 Exon array Signal Rep 2 from ENCODE/Duke 0 78 0 0 0 127 127 127 1 0 0 expression 1 longLabel GM19238 Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel GM19238 2\ subGroups cellType=t3GM19238 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonGm19238SimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeHaibTfbsGm12878Nfatc1sc17834V0422111RawRep2 GM78 NFATC1 V11 2 bigWig 0.152496 124.818001 GM12878 NFATC1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 78 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 NFATC1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 NFATC1 V11 2\ subGroups view=RawSignal factor=NFATC1SC17834 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Nfatc1sc17834V0422111RawRep2\ type bigWig 0.152496 124.818001\ wgEncodeSydhTfbsGm12878Srebp1IggrabSig GM78 SREBP1 IgR bigWig 1.000000 568.000000 GM12878 SREBP1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 78 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 SREBP1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 SREBP1 IgR\ subGroups view=Signal factor=SREBP1 cellType=t1GM12878 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsGm12878Srebp1IggrabSig\ type bigWig 1.000000 568.000000\ wgEncodeBroadHistoneH1hescSuz12051317Pk H1-hESC SUZ12 broadPeak H1-hESC SUZ12 (05-1317) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 78 0 107 27 127 181 141 1 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC SUZ12 (05-1317) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel H1-hESC SUZ12\ subGroups view=Peaks factor=SUZ12051317 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescSuz12051317Pk\ type broadPeak\ wgEncodeCshlLongRnaSeqH1hescCytosolPapAlnRep2 H1hSC cyt pA+ A 2 bam H1-hESC cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 78 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel H1hSC cyt pA+ A 2\ subGroups view=Alignments cellType=t1H1HESC localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescCytosolPapAlnRep2\ type bam\ wgEncodeUwDgfHcpePkV2 HCPEpiC Pk narrowPeak HCPEpiC DNaseI DGF Peaks from ENCODE/UW 0 78 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpiC DNaseI DGF Peaks from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HCPEpiC Pk\ subGroups view=Peaks cellType=t3HCPEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHcpePkV2\ type narrowPeak\ wgEncodeHaibMethylRrbsHepatocytesDukeSitesRep2 Hepatocytes 2 bed 9 + Hepatocytes Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 78 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Hepatocytes Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Hepatocytes 2\ subGroups cellType=t3HEPATOCYTES obtainedBy=DUKE treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHepatocytesDukeSitesRep2\ type bed 9 +\ wgEncodeCaltechRnaSeqHepg2R1x75dTh1014UMinusRawRep2V4 HepG 1x75D - 2 bigWig -92854.000000 -0.003000 HepG2 single read RNA-seq Minus Signal Rep 2 from ENCODE/Caltech 2 78 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 single read RNA-seq Minus Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewMinusSignal off\ shortLabel HepG 1x75D - 2\ subGroups view=MinusSignal cellType=t2HEPG2 readType=r1x75D insertLength=ilNa rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHepg2R1x75dTh1014UMinusRawRep2V4\ type bigWig -92854.000000 -0.003000\ wgEncodeUwHistoneHepg2H3k4me3StdRawRep1 HepG H3K4M3 Sg 1 bigWig 1.000000 1372.000000 HepG2 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 78 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HepG H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t2HEPG2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k4me3StdRawRep1\ type bigWig 1.000000 1372.000000\ wgEncodeUwAffyExonArrayHffSimpleSignalRep2 HFF 2 broadPeak HFF Exon-array Signal Rep 2 from ENCODE/UW 0 78 0 0 0 127 127 127 0 0 0 expression 1 longLabel HFF Exon-array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HFF 2\ subGroups cellType=t3HFF rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHffSimpleSignalRep2\ type broadPeak\ wgEncodeAwgDnaseUwdukeHsmmtubeUniPk HSMMtube DNase narrowPeak HSMMtube DNaseI HS Uniform Peaks from ENCODE/Analysis 1 78 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMMtube DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HSMMtube DNase\ subGroups tier=a30 cellType=HSMMtube\ track wgEncodeAwgDnaseUwdukeHsmmtubeUniPk\ wgEncodeGisRnaPetHuvecCytosolPapClustersRep1V2 HUVE cyto pA+ 1 bed 6 + HUVEC cytosol polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS 2 78 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC cytosol polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel HUVE cyto pA+ 1\ subGroups view=v1Clusters cellType=bHUVEC cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHuvecCytosolPapClustersRep1V2\ type bed 6 +\ pgNA18942indel JPT NA18942 indel pgSnp JPT NA18942 indel (Complete Genomics) 0 78 0 0 0 127 127 127 0 0 0 varRep 1 longLabel JPT NA18942 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel JPT NA18942 indel\ subGroups view=C_CG id=CE_div_GS18942 type=Indel\ track pgNA18942indel\ wgEncodeRikenCageK562NucleusPamMinusSignal K562 nucl pA- - 1 bigWig 0.040000 4464.319824 K562 nucleus polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 78 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleus polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal on\ shortLabel K562 nucl pA- - 1\ subGroups view=MinusRawSignal cellType=t1K562 localization=nucleus rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageK562NucleusPamMinusSignal\ type bigWig 0.040000 4464.319824\ wgEncodeOpenChromChipMcf7CmycVehBaseOverlapSignal MCF-7 veh cMyc OS bigWig 0.000000 4372.000000 MCF-7 vehicle cMyc TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 78 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 vehicle cMyc TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel MCF-7 veh cMyc OS\ subGroups treatment=VEH view=SIGBO factor=CMYC cellType=t2MCF7\ track wgEncodeOpenChromChipMcf7CmycVehBaseOverlapSignal\ type bigWig 0.000000 4372.000000\ wgEncodeOpenChromFaireMrta2041BaseOverlapSignal MRT A204.1 F OS bigWig 0.000000 1571.000000 MRT A204.1 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 78 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MRT A204.1 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel MRT A204.1 F OS\ subGroups view=SIGBO cellType=t3MRTA204 treatment=AANONE\ track wgEncodeOpenChromFaireMrta2041BaseOverlapSignal\ type bigWig 0.000000 1571.000000\ wgEncodeHaibGenotypeRptecRegionsRep1 RPTEC 1 bed 9 + RPTEC Copy number variants Replicate 1 from ENCODE/HAIB 0 78 0 0 0 127 127 127 0 0 0 varRep 1 longLabel RPTEC Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel RPTEC 1\ subGroups cellType=t3RPTEC obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeRptecRegionsRep1\ type bed 9 +\ wgEncodeUwRepliSeqSknshValleysRep1 SK-N-SH Vly 1 bed 9 SK-N-SH Repli-seq Valleys Rep 1 from ENCODE/UW 0 78 0 0 0 127 127 127 1 0 0 regulation 1 longLabel SK-N-SH Repli-seq Valleys Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewValleys off\ shortLabel SK-N-SH Vly 1\ subGroups view=v3Valleys cellType=t2SKNSH phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqSknshValleysRep1\ type bed 9\ wgEncodeHaibRnaSeqT47dGen4hAlnRep1 T-47D GEN 1 bam T-47D GENISTEIN 4 hr 100 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 78 0 0 0 127 127 127 0 0 0 expression 1 longLabel T-47D GENISTEIN 4 hr 100 nM RNA-seq Alignments Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel T-47D GEN 1\ subGroups view=Alignments cellType=t3T47D treatment=GEN4H rep=rep1\ track wgEncodeHaibRnaSeqT47dGen4hAlnRep1\ type bam\ wgEncodeCshlShortRnaSeqA549CellTapContigsV2 A549 cell TAP C bed 6 A549 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 79 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel A549 cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t2A549 localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqA549CellTapContigsV2\ type bed 6\ wgEncodeUwDnaseAg04449HotspotsRep1 AG04449 Ht 1 broadPeak AG04449 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 79 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04449 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel AG04449 Ht 1\ subGroups view=Hot cellType=t3AG04449 rep=rep1 treatment=None\ track wgEncodeUwDnaseAg04449HotspotsRep1\ type broadPeak\ wgEncodeUwTfbsAg09319CtcfStdRawRep2 AG19 CTCF Sg 2 bigWig 1.000000 16542.000000 AG09319 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 79 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG09319 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AG19 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3AG09319 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAg09319CtcfStdRawRep2\ type bigWig 1.000000 16542.000000\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_ctss_fwd AorticSmsToIL1b_02hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_forward 0 79 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep2%20%28LK47%29.CNhs13374.12755-136B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12755-136B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_tpm_fwd AorticSmsToIL1b_02hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_forward 1 79 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep2%20%28LK47%29.CNhs13374.12755-136B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12755-136B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseCerebellumocPk Cerbllm Pk narrowPeak Cerebellum OC DNaseI HS Peaks from ENCODE/Duke 3 79 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Cerebellum OC DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Cerbllm Pk\ subGroups view=Peaks cellType=t3CEREBELLUMOC treatment=zNONE\ track wgEncodeOpenChromDnaseCerebellumocPk\ type narrowPeak\ encTfChipPkENCFF166OZW GM12878 ARNT narrowPeak Transcription Factor ChIP-seq Peaks of ARNT in GM12878 from ENCODE 3 (ENCFF166OZW) 1 79 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ARNT in GM12878 from ENCODE 3 (ENCFF166OZW)\ parent encTfChipPk off\ shortLabel GM12878 ARNT\ subGroups cellType=GM12878 factor=ARNT\ track encTfChipPkENCFF166OZW\ wgEncodeAwgTfbsHaibGm12878Tcf12Pcr1xUniPk GM12878 TCF12 narrowPeak GM12878 TFBS Uniform Peaks of TCF12 from ENCODE/HudsonAlpha/Analysis 1 79 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of TCF12 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 TCF12\ subGroups tier=a10 cellType=a10GM12878 factor=TCF12 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Tcf12Pcr1xUniPk\ wgEncodeDukeAffyExonGm19239SimpleSignalRep1V2 GM19239 1 bigBed 6 + GM19239 Exon array Signal Rep 1 from ENCODE/Duke 0 79 0 0 0 127 127 127 1 0 0 expression 1 longLabel GM19239 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel GM19239 1\ subGroups cellType=t3GM19239 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonGm19239SimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeHaibTfbsGm12878Nficsc81335V0422111PkRep1 GM78 NFIC V11 1 broadPeak GM12878 NFIC v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 79 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 NFIC v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 NFIC V11 1\ subGroups view=Peaks factor=NFICSC81335 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Nficsc81335V0422111PkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878Srebp2IggrabPk GM78 SREBP2 IgR narrowPeak GM12878 SREBP2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 79 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 SREBP2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 SREBP2 IgR\ subGroups view=Peaks factor=SREBP2 cellType=t1GM12878 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsGm12878Srebp2IggrabPk\ type narrowPeak\ wgEncodeBroadHistoneH1hescSuz12051317Sig H1-hESC SUZ12 bigWig 0.040000 398.920013 H1-hESC SUZ12 (05-1317) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 79 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC SUZ12 (05-1317) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC SUZ12\ subGroups view=Signal factor=SUZ12051317 cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescSuz12051317Sig\ type bigWig 0.040000 398.920013\ wgEncodeCshlLongRnaSeqH1hescCytosolPapContigsV2 H1hSC cyt pA+ C bed 6 + H1-hESC cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 79 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel H1hSC cyt pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1H1HESC localization=CYTOSOL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqH1hescCytosolPapContigsV2\ type bed 6 +\ wgEncodeUwDgfHcpeSig HCPEpiC Sig bigWig 1.000000 28712.000000 HCPEpiC DNaseI DGF Per-base Signal from ENCODE/UW 2 79 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCPEpiC DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HCPEpiC Sig\ subGroups view=Signal cellType=t3HCPEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHcpeSig\ type bigWig 1.000000 28712.000000\ wgEncodeCaltechRnaSeqHepg2R1x75dTh1014UPlusRawRep1V4 HepG 1x75D + 1 bigWig 0.025000 117038.125000 HepG2 single read RNA-seq Plus Signal Rep 1 from ENCODE/Caltech 2 79 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 single read RNA-seq Plus Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewPlusSignal off\ shortLabel HepG 1x75D + 1\ subGroups view=PlusSignal cellType=t2HEPG2 readType=r1x75D insertLength=ilNa rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHepg2R1x75dTh1014UPlusRawRep1V4\ type bigWig 0.025000 117038.125000\ wgEncodeUwHistoneHepg2H3k4me3StdHotspotsRep2 HepG H3K4M3 Ht 2 broadPeak HepG2 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 79 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HepG H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t2HEPG2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwAffyExonArrayHffmycSimpleSignalRep1 HFF-Myc 1 broadPeak HFF-Myc Exon-array Signal Rep 1 from ENCODE/UW 0 79 0 0 0 127 127 127 0 0 0 expression 1 longLabel HFF-Myc Exon-array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HFF-Myc 1\ subGroups cellType=t3HFFMYC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHffmycSimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethylRrbsHipeUwSitesRep1 HIPEpiC 1 bed 9 + HIPEpiC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 79 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HIPEpiC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HIPEpiC 1\ subGroups cellType=t3HIPEPIC obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHipeUwSitesRep1\ type bed 9 +\ wgEncodeAwgDnaseDukeHtr8svnUniPk HTR8svn DNase narrowPeak HTR8svn DNaseI HS Uniform Peaks from ENCODE/Analysis 1 79 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HTR8svn DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HTR8svn DNase\ subGroups tier=a30 cellType=HTR8svn\ track wgEncodeAwgDnaseDukeHtr8svnUniPk\ wgEncodeGisRnaPetHuvecCytosolPapMinusRawRep1V2 HUVE cyto pA+ - 1 bigWig 1.000000 925042.000000 HUVEC cytosol polyA+ clone-free RNA PET Minus Signal Rep 1 from ENCODE/GIS 2 79 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC cytosol polyA+ clone-free RNA PET Minus Signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel HUVE cyto pA+ - 1\ subGroups view=v2MinusRawSignal cellType=bHUVEC cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHuvecCytosolPapMinusRawRep1V2\ type bigWig 1.000000 925042.000000\ pgNA18947 JPT NA18947 pgSnp JPT NA18947 (Complete Genomics) 0 79 0 0 0 127 127 127 0 0 0 varRep 1 longLabel JPT NA18947 (Complete Genomics)\ parent pgSnpCg\ shortLabel JPT NA18947\ subGroups view=C_CG id=CE_div_GS18947 type=SNP\ track pgNA18947\ wgEncodeRikenCageK562NucleusPamAln K562 nucl pA- A 1 bam K562 nucleus polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN 0 79 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleus polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel K562 nucl pA- A 1\ subGroups view=Alignments cellType=t1K562 localization=nucleus rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageK562NucleusPamAln\ type bam\ wgEncodeOpenChromChipMcf7CtcfPk MCF-7 CTCF Pk narrowPeak MCF-7 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 79 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel MCF-7 CTCF Pk\ subGroups treatment=AANONE view=Peaks factor=CTCF cellType=t2MCF7\ track wgEncodeOpenChromChipMcf7CtcfPk\ type narrowPeak\ wgEncodeOpenChromFaireMrtg4016Pk MRT G401.6 F Pk narrowPeak MRT G401.6 FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 79 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MRT G401.6 FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel MRT G401.6 F Pk\ subGroups view=Peaks cellType=t3MRTG401 treatment=AANONE\ track wgEncodeOpenChromFaireMrtg4016Pk\ type narrowPeak\ wgEncodeHaibGenotypeRptecRegionsRep2 RPTEC 2 bed 9 + RPTEC Copy number variants Replicate 2 from ENCODE/HAIB 0 79 0 0 0 127 127 127 0 0 0 varRep 1 longLabel RPTEC Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel RPTEC 2\ subGroups cellType=t3RPTEC obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeRptecRegionsRep2\ type bed 9 +\ wgEncodeUwRepliSeqSknshWaveSignalRep1 SK-N-SH Ws 1 bigWig -4.517115 80.696381 SK-N-SH Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW 2 79 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewWaveSignal off\ shortLabel SK-N-SH Ws 1\ subGroups view=v4WaveSignal cellType=t2SKNSH phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqSknshWaveSignalRep1\ type bigWig -4.517115 80.696381\ wgEncodeHaibRnaSeqT47dGen4hRawRep2 T-47D GEN 2 bigWig 0.174213 644.237976 T-47D GENISTEIN 4 hr 100 nM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 79 0 0 0 127 127 127 0 0 0 expression 0 longLabel T-47D GENISTEIN 4 hr 100 nM RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel T-47D GEN 2\ subGroups view=RawSignal cellType=t3T47D treatment=GEN4H rep=rep2\ track wgEncodeHaibRnaSeqT47dGen4hRawRep2\ type bigWig 0.174213 644.237976\ wgEncodeCshlShortRnaSeqA549CellShorttotalTapMinusRep1V2 A549 cell TAP - 1 bigWig 1.000000 6730925.000000 A549 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 80 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel A549 cell TAP - 1\ subGroups view=MinusSignal cellType=t2A549 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqA549CellShorttotalTapMinusRep1V2\ type bigWig 1.000000 6730925.000000\ wgEncodeUwDnaseAg04449PkRep1 AG04449 Pk 1 narrowPeak AG04449 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 80 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04449 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel AG04449 Pk 1\ subGroups view=Peaks cellType=t3AG04449 rep=rep1 treatment=None\ track wgEncodeUwDnaseAg04449PkRep1\ type narrowPeak\ wgEncodeUwTfbsAg09319InputStdRawRep1 AG19 In Sg 1 bigWig 1.000000 23698.000000 AG09319 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 80 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG09319 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AG19 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3AG09319 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg09319InputStdRawRep1\ type bigWig 1.000000 23698.000000\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_ctss_rev AorticSmsToIL1b_02hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_reverse 0 80 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep2%20%28LK47%29.CNhs13374.12755-136B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12755-136B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_tpm_rev AorticSmsToIL1b_02hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_reverse 1 80 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep2%20%28LK47%29.CNhs13374.12755-136B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12755-136B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseCerebellumocSig Cerbllm DS bigWig 0.000000 1.795000 Cerebellum OC DNaseI HS Density Signal from ENCODE/Duke 2 80 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Cerebellum OC DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Cerbllm DS\ subGroups view=SIG cellType=t3CEREBELLUMOC treatment=zNONE\ track wgEncodeOpenChromDnaseCerebellumocSig\ type bigWig 0.000000 1.795000\ encTfChipPkENCFF917CXD GM12878 ASH2L narrowPeak Transcription Factor ChIP-seq Peaks of ASH2L in GM12878 from ENCODE 3 (ENCFF917CXD) 1 80 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ASH2L in GM12878 from ENCODE 3 (ENCFF917CXD)\ parent encTfChipPk off\ shortLabel GM12878 ASH2L\ subGroups cellType=GM12878 factor=ASH2L\ track encTfChipPkENCFF917CXD\ wgEncodeAwgTfbsHaibGm12878Tcf3Pcr1xUniPk GM12878 TCF3 narrowPeak GM12878 TFBS Uniform Peaks of TCF3_(SC-349) from ENCODE/HudsonAlpha/Analysis 1 80 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of TCF3_(SC-349) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 TCF3\ subGroups tier=a10 cellType=a10GM12878 factor=TCF3 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Tcf3Pcr1xUniPk\ wgEncodeDukeAffyExonGm19239SimpleSignalRep2V2 GM19239 2 bigBed 6 + GM19239 Exon array Signal Rep 2 from ENCODE/Duke 0 80 0 0 0 127 127 127 1 0 0 expression 1 longLabel GM19239 Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel GM19239 2\ subGroups cellType=t3GM19239 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonGm19239SimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeHaibTfbsGm12878Nficsc81335V0422111RawRep1 GM78 NFIC V11 1 bigWig 0.137796 126.428001 GM12878 NFIC v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 80 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 NFIC v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 NFIC V11 1\ subGroups view=RawSignal factor=NFICSC81335 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Nficsc81335V0422111RawRep1\ type bigWig 0.137796 126.428001\ wgEncodeSydhTfbsGm12878Srebp2IggrabSig GM78 SREBP2 IgR bigWig 1.000000 600.000000 GM12878 SREBP2 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 80 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 SREBP2 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 SREBP2 IgR\ subGroups view=Signal factor=SREBP2 cellType=t1GM12878 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsGm12878Srebp2IggrabSig\ type bigWig 1.000000 600.000000\ wgEncodeBroadHistoneH1hescControlStdSig H1-hESC Input bigWig 0.040000 10153.759766 H1-hESC Input Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 80 0 107 27 127 181 141 1 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Input Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel H1-hESC Input\ subGroups view=Signal factor=zCTRL cellType=t1H1HESC treatment=zNONE\ track wgEncodeBroadHistoneH1hescControlStdSig\ type bigWig 0.040000 10153.759766\ wgEncodeCshlLongRnaSeqH1hescCytosolPapJunctions H1hSC cyt pA+ J bed 6 + H1-hESC cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 80 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel H1hSC cyt pA+ J\ subGroups view=Junctions cellType=t1H1HESC localization=CYTOSOL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqH1hescCytosolPapJunctions\ type bed 6 +\ wgEncodeUwDgfHcpeRaw HCPEpiC Raw bigWig 1.000000 96000.000000 HCPEpiC DNaseI DGF Raw Signal from ENCODE/UW 0 80 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCPEpiC DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HCPEpiC Raw\ subGroups view=zRaw cellType=t3HCPEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHcpeRaw\ type bigWig 1.000000 96000.000000\ wgEncodeCaltechRnaSeqHepg2R1x75dTh1014UPlusRawRep2V4 HepG 1x75D + 2 bigWig 0.018800 87949.000000 HepG2 single read RNA-seq Plus Signal Rep 2 from ENCODE/Caltech 2 80 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 single read RNA-seq Plus Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewPlusSignal off\ shortLabel HepG 1x75D + 2\ subGroups view=PlusSignal cellType=t2HEPG2 readType=r1x75D insertLength=ilNa rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHepg2R1x75dTh1014UPlusRawRep2V4\ type bigWig 0.018800 87949.000000\ wgEncodeUwHistoneHepg2H3k4me3StdPkRep2 HepG H3K4M3 Pk 2 narrowPeak HepG2 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 80 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HepG H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t2HEPG2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k4me3StdPkRep2\ type narrowPeak\ wgEncodeUwAffyExonArrayHffmycSimpleSignalRep2 HFF-Myc 2 broadPeak HFF-Myc Exon-array Signal Rep 2 from ENCODE/UW 0 80 0 0 0 127 127 127 0 0 0 expression 1 longLabel HFF-Myc Exon-array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HFF-Myc 2\ subGroups cellType=t3HFFMYC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHffmycSimpleSignalRep2\ type broadPeak\ wgEncodeHaibMethylRrbsHipeUwSitesRep2 HIPEpiC 2 bed 9 + HIPEpiC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 80 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HIPEpiC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HIPEpiC 2\ subGroups cellType=t3HIPEPIC obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHipeUwSitesRep2\ type bed 9 +\ wgEncodeGisRnaPetHuvecCytosolPapPlusRawRep1V2 HUVE cyto pA+ + 1 bigWig 1.000000 1596070.000000 HUVEC cytosol polyA+ clone-free RNA PET Plus Signal Rep 1 from ENCODE/GIS 2 80 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC cytosol polyA+ clone-free RNA PET Plus Signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel HUVE cyto pA+ + 1\ subGroups view=v2PlusRawSignal cellType=bHUVEC cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHuvecCytosolPapPlusRawRep1V2\ type bigWig 1.000000 1596070.000000\ wgEncodeAwgDnaseUwHvmfUniPk HVMF DNase narrowPeak HVMF DNaseI HS Uniform Peaks from ENCODE/Analysis 1 80 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HVMF DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HVMF DNase\ subGroups tier=a30 cellType=HVMF\ track wgEncodeAwgDnaseUwHvmfUniPk\ pgNA18947indel JPT NA18947 indel pgSnp JPT NA18947 indel (Complete Genomics) 0 80 0 0 0 127 127 127 0 0 0 varRep 1 longLabel JPT NA18947 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel JPT NA18947 indel\ subGroups view=C_CG id=CE_div_GS18947 type=Indel\ track pgNA18947indel\ wgEncodeRikenCageK562NucleusPapTssHmm K562 nucl pA+ bed 6 K562 nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 80 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm on\ shortLabel K562 nucl pA+\ subGroups view=TssHmm cellType=t1K562 localization=nucleus rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageK562NucleusPapTssHmm\ type bed 6\ wgEncodeOpenChromChipMcf7CtcfSig MCF-7 CTCF DS bigWig 0.000000 10.135200 MCF-7 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 80 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel MCF-7 CTCF DS\ subGroups treatment=AANONE view=SIG factor=CTCF cellType=t2MCF7\ track wgEncodeOpenChromChipMcf7CtcfSig\ type bigWig 0.000000 10.135200\ wgEncodeOpenChromFaireMrtg4016Sig MRT G401.6 F DS bigWig 0.000000 0.801300 MRT G401.6 FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 80 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MRT G401.6 FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel MRT G401.6 F DS\ subGroups view=SIG cellType=t3MRTG401 treatment=AANONE\ track wgEncodeOpenChromFaireMrtg4016Sig\ type bigWig 0.000000 0.801300\ wgEncodeHaibGenotypeSaecRegionsRep1 SAEC 1 bed 9 + SAEC Copy number variants Replicate 1 from ENCODE/HAIB 0 80 0 0 0 127 127 127 0 0 0 varRep 1 longLabel SAEC Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel SAEC 1\ subGroups cellType=t3SAEC obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeSaecRegionsRep1\ type bed 9 +\ wgEncodeUwRepliSeqSknshSumSignalRep1 SK-N-SH Sd 1 bigWig 1.000000 2886.000000 SK-N-SH Repli-seq Summed Densities Rep 1 from ENCODE/UW 0 80 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Repli-seq Summed Densities Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewSumSignal off\ shortLabel SK-N-SH Sd 1\ subGroups view=v5SumSignal cellType=t2SKNSH phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqSknshSumSignalRep1\ type bigWig 1.000000 2886.000000\ wgEncodeHaibRnaSeqT47dGen4hAlnRep2 T-47D GEN 2 bam T-47D GENISTEIN 4 hr 100 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 80 0 0 0 127 127 127 0 0 0 expression 1 longLabel T-47D GENISTEIN 4 hr 100 nM RNA-seq Alignments Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel T-47D GEN 2\ subGroups view=Alignments cellType=t3T47D treatment=GEN4H rep=rep2\ track wgEncodeHaibRnaSeqT47dGen4hAlnRep2\ type bam\ wgEncodeCshlShortRnaSeqA549CellShorttotalTapMinusRep2V2 A549 cell TAP - 2 bigWig 1.000000 6935555.000000 A549 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 81 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel A549 cell TAP - 2\ subGroups view=MinusSignal cellType=t2A549 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqA549CellShorttotalTapMinusRep2V2\ type bigWig 1.000000 6935555.000000\ wgEncodeUwTfbsAg10803CtcfStdHotspotsRep1 AG03 CTCF Ht 1 broadPeak AG10803 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 81 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel AG03 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3AG10803 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg10803CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseAg04449RawRep1 AG04449 Sg 1 bigWig 1.000000 31758.000000 AG04449 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 81 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04449 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel AG04449 Sg 1\ subGroups view=zRSig cellType=t3AG04449 rep=rep1 treatment=None\ track wgEncodeUwDnaseAg04449RawRep1\ type bigWig 1.000000 31758.000000\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_ctss_fwd AorticSmsToIL1b_02hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_forward 0 81 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep3%20%28LK48%29.CNhs13582.12853-137C9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12853-137C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_tpm_fwd AorticSmsToIL1b_02hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_forward 1 81 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep3%20%28LK48%29.CNhs13582.12853-137C9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12853-137C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9\ urlLabel FANTOM5 Details:\ wgEncodeUwRepliSeqBg02esG1bPctSignalRep1 BG02ES G1b 1 bigWig 1.000000 100.000000 BG02ES G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 81 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BG02ES G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BG02ES G1b 1\ subGroups view=v1PctSignal cellType=t3BG02ES phase=p1G1B rep=rep1\ track wgEncodeUwRepliSeqBg02esG1bPctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseCerebellumocBaseOverlapSignal Cerbllm OS bigWig 0.000000 220.000000 Cerebellum OC DNaseI HS Overlap Signal from ENCODE/Duke 2 81 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Cerebellum OC DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Cerbllm OS\ subGroups view=SIGBO cellType=t3CEREBELLUMOC treatment=zNONE\ track wgEncodeOpenChromDnaseCerebellumocBaseOverlapSignal\ type bigWig 0.000000 220.000000\ encTfChipPkENCFF127GYQ GM12878 ATF2 1 narrowPeak Transcription Factor ChIP-seq Peaks of ATF2 in GM12878 from ENCODE 3 (ENCFF127GYQ) 1 81 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ATF2 in GM12878 from ENCODE 3 (ENCFF127GYQ)\ parent encTfChipPk off\ shortLabel GM12878 ATF2 1\ subGroups cellType=GM12878 factor=ATF2\ track encTfChipPkENCFF127GYQ\ wgEncodeAwgTfbsHaibGm12878Usf1Pcr2xUniPk GM12878 USF1 narrowPeak GM12878 TFBS Uniform Peaks of USF-1 from ENCODE/HudsonAlpha/Analysis 1 81 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of USF-1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 USF1\ subGroups tier=a10 cellType=a10GM12878 factor=USF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Usf1Pcr2xUniPk\ wgEncodeDukeAffyExonGm19240SimpleSignalRep1V2 GM19240 1 bigBed 6 + GM19240 Exon array Signal Rep 1 from ENCODE/Duke 0 81 0 0 0 127 127 127 1 0 0 expression 1 longLabel GM19240 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel GM19240 1\ subGroups cellType=t3GM19240 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonGm19240SimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeHaibTfbsGm12878Nficsc81335V0422111PkRep2 GM78 NFIC V11 2 broadPeak GM12878 NFIC v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 81 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 NFIC v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 NFIC V11 2\ subGroups view=Peaks factor=NFICSC81335 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Nficsc81335V0422111PkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12878Stat1StdPk GM78 STA1 Std narrowPeak GM12878 STAT1 Standard ChIP-seq Peaks from ENCODE/SYDH 3 81 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 STAT1 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 STA1 Std\ subGroups view=Peaks factor=STAT1 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Stat1StdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqH1hescCytosolPapMinusRawSigRep2 H1hSC cyt pA+ - 2 bigWig 1.000000 250111.000000 H1-hESC cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 81 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel H1hSC cyt pA+ - 2\ subGroups view=MinusSignal cellType=t1H1HESC localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescCytosolPapMinusRawSigRep2\ type bigWig 1.000000 250111.000000\ wgEncodeUwDgfHeeHotspots HEEpiC Hot broadPeak HEEpiC DNaseI DGF Hotspots from ENCODE/UW 0 81 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpiC DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HEEpiC Hot\ subGroups view=Hotspots cellType=t3HEEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHeeHotspots\ type broadPeak\ wgEncodeAwgDnaseDukeHelas3ifna4hUniPk HeLaS3(IFN) DNase narrowPeak HeLa-S3 (IFNa) DNaseI HS Uniform Peaks from ENCODE/Analysis 1 81 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HeLa-S3 (IFNa) DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel HeLaS3(IFN) DNase\ subGroups tier=a30 cellType=HeLa-S3-IFNa\ track wgEncodeAwgDnaseDukeHelas3ifna4hUniPk\ wgEncodeCaltechRnaSeqHepg2R1x75dSplicesRep1V2 HepG 1x75D Sp 1 bam HepG2 single read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 81 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 single read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel HepG 1x75D Sp 1\ subGroups view=Splices cellType=t2HEPG2 insertLength=ilNa readType=r1x75D rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHepg2R1x75dSplicesRep1V2\ type bam\ wgEncodeUwHistoneHepg2H3k4me3StdRawRep2 HepG H3K4M3 Sg 2 bigWig 1.000000 1522.000000 HepG2 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 81 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HepG H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t2HEPG2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k4me3StdRawRep2\ type bigWig 1.000000 1522.000000\ wgEncodeUwAffyExonArrayHgfSimpleSignalRep1 HGF 1 broadPeak HGF Exon array Signal Rep 1 from ENCODE/UW 0 81 0 0 0 127 127 127 0 0 0 expression 1 longLabel HGF Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HGF 1\ subGroups cellType=t3HGF rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHgfSimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethylRrbsHl60UwSitesRep1 HL-60 1 bed 9 + HL-60 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 81 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HL-60 1\ subGroups cellType=t3HL60 obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHl60UwSitesRep1\ type bed 9 +\ wgEncodeGisRnaPetHuvecCytosolPapAlnRep1V2 HUVE cyto pA+ A 1 bam HUVEC cytosol polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS 0 81 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC cytosol polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel HUVE cyto pA+ A 1\ subGroups view=v3Alignments cellType=bHUVEC cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHuvecCytosolPapAlnRep1V2\ type bam\ pgNA18956 JPT NA18956 pgSnp JPT NA18956 (Complete Genomics) 0 81 0 0 0 127 127 127 0 0 0 varRep 1 longLabel JPT NA18956 (Complete Genomics)\ parent pgSnpCg\ shortLabel JPT NA18956\ subGroups view=C_CG id=CE_div_GS18956 type=SNP\ track pgNA18956\ wgEncodeBroadHistoneK562Cbpsc369Pk K562 CBP (SC-369) broadPeak K562 CBP (sc-369) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 81 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 CBP (sc-369) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 CBP (SC-369)\ subGroups view=Peaks factor=CBPSC369 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Cbpsc369Pk\ type broadPeak\ wgEncodeRikenCageK562NucleusPapPlusSignalRep1 K562 nucl pA+ + 1 bigWig 0.050000 34920.730469 K562 nucleus polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 81 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleus polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal on\ shortLabel K562 nucl pA+ + 1\ subGroups view=PlusRawSignal cellType=t1K562 localization=nucleus rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageK562NucleusPapPlusSignalRep1\ type bigWig 0.050000 34920.730469\ wgEncodeOpenChromChipMcf7CtcfBaseOverlapSignal MCF-7 CTCF OS bigWig 0.000000 4684.000000 MCF-7 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 81 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel MCF-7 CTCF OS\ subGroups treatment=AANONE view=SIGBO factor=CTCF cellType=t2MCF7\ track wgEncodeOpenChromChipMcf7CtcfBaseOverlapSignal\ type bigWig 0.000000 4684.000000\ wgEncodeOpenChromFaireMrtg4016BaseOverlapSignal MRT G401.6 F OS bigWig 0.000000 1909.000000 MRT G401.6 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 81 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MRT G401.6 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel MRT G401.6 F OS\ subGroups view=SIGBO cellType=t3MRTG401 treatment=AANONE\ track wgEncodeOpenChromFaireMrtg4016BaseOverlapSignal\ type bigWig 0.000000 1909.000000\ wgEncodeHaibGenotypeSaecRegionsRep2 SAEC 2 bed 9 + SAEC Copy number variants Replicate 2 from ENCODE/HAIB 0 81 0 0 0 127 127 127 0 0 0 varRep 1 longLabel SAEC Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel SAEC 2\ subGroups cellType=t3SAEC obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeSaecRegionsRep2\ type bed 9 +\ wgEncodeHaibRnaSeqU87RawRep1V2 U87 1 bigWig 1.000000 52464.000000 U87 RNA-seq Raw Signal Rep 1 from ENCODE/HAIB 2 81 0 0 0 127 127 127 0 0 0 expression 0 longLabel U87 RNA-seq Raw Signal Rep 1 from ENCODE/HAIB\ origAssembly hg18\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel U87 1\ subGroups view=RawSignal cellType=t3U87 treatment=zNONE rep=rep1\ track wgEncodeHaibRnaSeqU87RawRep1V2\ type bigWig 1.000000 52464.000000\ wgEncodeCshlShortRnaSeqA549CellShorttotalTapPlusRep1V2 A549 cell TAP + 1 bigWig 1.000000 6306518.000000 A549 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 82 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 cell TAP + 1\ subGroups view=PlusSignal cellType=t2A549 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqA549CellShorttotalTapPlusRep1V2\ type bigWig 1.000000 6306518.000000\ wgEncodeUwTfbsAg10803CtcfStdPkRep1 AG03 CTCF Pk 1 narrowPeak AG10803 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 82 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel AG03 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3AG10803 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg10803CtcfStdPkRep1\ type narrowPeak\ wgEncodeUwDnaseAg04449HotspotsRep2 AG04449 Ht 2 broadPeak AG04449 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 82 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04449 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel AG04449 Ht 2\ subGroups view=Hot cellType=t3AG04449 rep=rep2 treatment=None\ track wgEncodeUwDnaseAg04449HotspotsRep2\ type broadPeak\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_ctss_rev AorticSmsToIL1b_02hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_reverse 0 82 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep3%20%28LK48%29.CNhs13582.12853-137C9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12853-137C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_tpm_rev AorticSmsToIL1b_02hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_reverse 1 82 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep3%20%28LK48%29.CNhs13582.12853-137C9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12853-137C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9\ urlLabel FANTOM5 Details:\ wgEncodeUwRepliSeqBg02esS1PctSignalRep1 BG02ES S1 1 bigWig 1.000000 100.000000 BG02ES S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 82 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BG02ES S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BG02ES S1 1\ subGroups view=v1PctSignal cellType=t3BG02ES phase=p2S1 rep=rep1\ track wgEncodeUwRepliSeqBg02esS1PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseCerebrumfrontalocPk Cerbrm frnt Pk narrowPeak Cerebrum frontal OC DNaseI HS Peaks from ENCODE/Duke 3 82 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Cerebrum frontal OC DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Cerbrm frnt Pk\ subGroups view=Peaks cellType=t3CEREBRUMFRONTALOC treatment=zNONE\ track wgEncodeOpenChromDnaseCerebrumfrontalocPk\ type narrowPeak\ encTfChipPkENCFF609KOY GM12878 ATF2 2 narrowPeak Transcription Factor ChIP-seq Peaks of ATF2 in GM12878 from ENCODE 3 (ENCFF609KOY) 1 82 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ATF2 in GM12878 from ENCODE 3 (ENCFF609KOY)\ parent encTfChipPk off\ shortLabel GM12878 ATF2 2\ subGroups cellType=GM12878 factor=ATF2\ track encTfChipPkENCFF609KOY\ wgEncodeAwgTfbsSydhGm12878Usf2IggmusUniPk GM12878 USF2 narrowPeak GM12878 TFBS Uniform Peaks of USF2 from ENCODE/Stanford/Analysis 1 82 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of USF2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 USF2\ subGroups tier=a10 cellType=a10GM12878 factor=USF2 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Usf2IggmusUniPk\ wgEncodeDukeAffyExonGm19240SimpleSignalRep2V2 GM19240 2 bigBed 6 + GM19240 Exon array Signal Rep 2 from ENCODE/Duke 0 82 0 0 0 127 127 127 1 0 0 expression 1 longLabel GM19240 Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel GM19240 2\ subGroups cellType=t3GM19240 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonGm19240SimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeHaibTfbsGm12878Nficsc81335V0422111RawRep2 GM78 NFIC V11 2 bigWig 0.150112 255.979004 GM12878 NFIC v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 82 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 NFIC v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 NFIC V11 2\ subGroups view=RawSignal factor=NFICSC81335 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Nficsc81335V0422111RawRep2\ type bigWig 0.150112 255.979004\ wgEncodeSydhTfbsGm12878Stat1StdSig GM78 STA1 Std bigWig 1.000000 11984.000000 GM12878 STAT1 Standard ChIP-seq Signal from ENCODE/SYDH 2 82 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 STAT1 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 STA1 Std\ subGroups view=Signal factor=STAT1 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Stat1StdSig\ type bigWig 1.000000 11984.000000\ wgEncodeCshlLongRnaSeqH1hescCytosolPapPlusRawSigRep2 H1hSC cyt pA+ + 2 bigWig 1.000000 463028.000000 H1-hESC cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 82 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel H1hSC cyt pA+ + 2\ subGroups view=PlusSignal cellType=t1H1HESC localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescCytosolPapPlusRawSigRep2\ type bigWig 1.000000 463028.000000\ wgEncodeUwDgfHeePk HEEpiC Pk narrowPeak HEEpiC DNaseI DGF Peaks from ENCODE/UW 0 82 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpiC DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HEEpiC Pk\ subGroups view=Peaks cellType=t3HEEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHeePk\ type narrowPeak\ wgEncodeAwgDnaseDukeHepatocytesUniPk Hepatocytes DNase narrowPeak Hepatocytes DNaseI HS Uniform Peaks from ENCODE/Analysis 1 82 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Hepatocytes DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Hepatocytes DNase\ subGroups tier=a30 cellType=Hepatocytes\ track wgEncodeAwgDnaseDukeHepatocytesUniPk\ wgEncodeCaltechRnaSeqHepg2R1x75dSplicesRep2V2 HepG 1x75D Sp 2 bam HepG2 single read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 82 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 single read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel HepG 1x75D Sp 2\ subGroups view=Splices cellType=t2HEPG2 insertLength=ilNa readType=r1x75D rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHepg2R1x75dSplicesRep2V2\ type bam\ wgEncodeUwHistoneHepg2H3k27me3StdHotspotsRep1 HepG H3K27M3 Ht 1 broadPeak HepG2 H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 82 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HepG H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t2HEPG2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k27me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwAffyExonArrayHgfSimpleSignalRep2 HGF 2 broadPeak HGF Exon array Signal Rep 2 from ENCODE/UW 0 82 0 0 0 127 127 127 0 0 0 expression 1 longLabel HGF Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HGF 2\ subGroups cellType=t3HGF rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHgfSimpleSignalRep2\ type broadPeak\ wgEncodeHaibMethylRrbsHl60UwSitesRep2 HL-60 2 bed 9 + HL-60 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 82 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HL-60 2\ subGroups cellType=t3HL60 obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHl60UwSitesRep2\ type bed 9 +\ wgEncodeGisRnaPetHuvecNucleusPapClustersRep1 HUVE nucl pA+ 1 bed 6 + HUVEC nucleus polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS 2 82 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC nucleus polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel HUVE nucl pA+ 1\ subGroups view=v1Clusters cellType=bHUVEC cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHuvecNucleusPapClustersRep1\ type bed 6 +\ pgNA18956indel JPT NA18956 indel pgSnp JPT NA18956 indel (Complete Genomics) 0 82 0 0 0 127 127 127 0 0 0 varRep 1 longLabel JPT NA18956 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel JPT NA18956 indel\ subGroups view=C_CG id=CE_div_GS18956 type=Indel\ track pgNA18956indel\ wgEncodeBroadHistoneK562Cbpsc369Sig K562 CBP (SC-369) bigWig 0.040000 400.000000 K562 CBP (sc-369) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 82 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 CBP (sc-369) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 CBP (SC-369)\ subGroups view=Signal factor=CBPSC369 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Cbpsc369Sig\ type bigWig 0.040000 400.000000\ wgEncodeRikenCageK562NucleusPapPlusSignalRep2 K562 nucl pA+ + 2 bigWig 0.050000 45255.660156 K562 nucleus polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 82 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleus polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel K562 nucl pA+ + 2\ subGroups view=PlusRawSignal cellType=t1K562 localization=nucleus rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageK562NucleusPapPlusSignalRep2\ type bigWig 0.050000 45255.660156\ wgEncodeOpenChromChipMcf7CtcfEstroPkRep1 MCF-7 est CTCF Pk narrowPeak MCF-7 estrogen CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 82 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 estrogen CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel MCF-7 est CTCF Pk\ subGroups treatment=ESTRO view=Peaks factor=CTCF cellType=t2MCF7\ track wgEncodeOpenChromChipMcf7CtcfEstroPkRep1\ type narrowPeak\ wgEncodeOpenChromFaireMrtttc549Pk MRT TTC549 F Pk narrowPeak MRT TTC549 FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 82 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MRT TTC549 FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel MRT TTC549 F Pk\ subGroups view=Peaks cellType=t3MRTTTC549 treatment=AANONE\ track wgEncodeOpenChromFaireMrtttc549Pk\ type narrowPeak\ wgEncodeHaibGenotypeSkmcRegionsRep1 SKMC 1 bed 9 + SKMC Copy number variants Replicate 1 from ENCODE/HAIB 0 82 0 0 0 127 127 127 0 0 0 varRep 1 longLabel SKMC Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel SKMC 1\ subGroups cellType=t3SKMC obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeSkmcRegionsRep1\ type bed 9 +\ wgEncodeHaibRnaSeqU87AlnRep1V2 U87 1 bam U87 RNA-seq Alignments Rep 1 from ENCODE/HAIB 0 82 0 0 0 127 127 127 0 0 0 expression 1 longLabel U87 RNA-seq Alignments Rep 1 from ENCODE/HAIB\ origAssembly hg18\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel U87 1\ subGroups view=Alignments cellType=t3U87 treatment=zNONE rep=rep1\ track wgEncodeHaibRnaSeqU87AlnRep1V2\ type bam\ wgEncodeCshlShortRnaSeqA549CellShorttotalTapPlusRep2V2 A549 cell TAP + 2 bigWig 1.000000 7325977.000000 A549 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 83 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 cell TAP + 2\ subGroups view=PlusSignal cellType=t2A549 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqA549CellShorttotalTapPlusRep2V2\ type bigWig 1.000000 7325977.000000\ wgEncodeUwTfbsAg10803CtcfStdRawRep1 AG03 CTCF Sg 1 bigWig 1.000000 19625.000000 AG10803 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 83 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG10803 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AG03 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3AG10803 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg10803CtcfStdRawRep1\ type bigWig 1.000000 19625.000000\ wgEncodeUwDnaseAg04449PkRep2 AG04449 Pk 2 narrowPeak AG04449 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 83 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04449 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel AG04449 Pk 2\ subGroups view=Peaks cellType=t3AG04449 rep=rep2 treatment=None\ track wgEncodeUwDnaseAg04449PkRep2\ type narrowPeak\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_ctss_fwd AorticSmsToIL1b_03hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_forward 0 83 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep1%20%28LK49%29.CNhs13355.12658-134I3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12658-134I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_tpm_fwd AorticSmsToIL1b_03hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_forward 1 83 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep1%20%28LK49%29.CNhs13355.12658-134I3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12658-134I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3\ urlLabel FANTOM5 Details:\ wgEncodeUwRepliSeqBg02esS2PctSignalRep1 BG02ES S2 1 bigWig 1.000000 100.000000 BG02ES S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 83 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BG02ES S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BG02ES S2 1\ subGroups view=v1PctSignal cellType=t3BG02ES phase=p3S2 rep=rep1\ track wgEncodeUwRepliSeqBg02esS2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseCerebrumfrontalocSig Cerbrm frnt DS bigWig 0.000000 1.972200 Cerebrum frontal OC DNaseI HS Density Signal from ENCODE/Duke 2 83 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Cerebrum frontal OC DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Cerbrm frnt DS\ subGroups view=SIG cellType=t3CEREBRUMFRONTALOC treatment=zNONE\ track wgEncodeOpenChromDnaseCerebrumfrontalocSig\ type bigWig 0.000000 1.972200\ encTfChipPkENCFF726VEK GM12878 ATF7 narrowPeak Transcription Factor ChIP-seq Peaks of ATF7 in GM12878 from ENCODE 3 (ENCFF726VEK) 1 83 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ATF7 in GM12878 from ENCODE 3 (ENCFF726VEK)\ parent encTfChipPk off\ shortLabel GM12878 ATF7\ subGroups cellType=GM12878 factor=ATF7\ track encTfChipPkENCFF726VEK\ wgEncodeAwgTfbsSydhGm12878WhipIggmusUniPk GM12878 WRNIP1 narrowPeak GM12878 TFBS Uniform Peaks of WHIP from ENCODE/Stanford/Analysis 1 83 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of WHIP from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 WRNIP1\ subGroups tier=a10 cellType=a10GM12878 factor=WRNIP1 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878WhipIggmusUniPk\ wgEncodeHaibTfbsGm12878NrsfPcr1xPkRep1 GM78 NRSF PCR1 1 broadPeak GM12878 NRSF PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 83 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 NRSF PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 NRSF PCR1 1\ subGroups view=Peaks factor=NRSF cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878NrsfPcr1xPkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878Stat3IggmusPk GM78 STA3 IgM narrowPeak GM12878 STAT3 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 83 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 STAT3 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 STA3 IgM\ subGroups view=Peaks factor=STAT3 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Stat3IggmusPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqH1hescNucleusLongnonpolyaAlnRep2 H1hSC nuc pA- A 2 bam H1-hESC nucleus polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 83 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC nucleus polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel H1hSC nuc pA- A 2\ subGroups view=Alignments cellType=t1H1HESC localization=NUCLEUS rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescNucleusLongnonpolyaAlnRep2\ type bam\ wgEncodeDukeAffyExonH7esSimpleSignalRep1 H7-hESC 1 bigBed 6 + H7-hESC Exon array Signal Rep 1 from ENCODE/Duke 0 83 0 0 0 127 127 127 1 0 0 expression 1 longLabel H7-hESC Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel H7-hESC 1\ subGroups cellType=t3H7HESC treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonH7esSimpleSignalRep1\ type bigBed 6 +\ wgEncodeUwDgfHeeSig HEEpiC Sig bigWig 1.000000 120281.000000 HEEpiC DNaseI DGF Per-base Signal from ENCODE/UW 2 83 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEEpiC DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HEEpiC Sig\ subGroups view=Signal cellType=t3HEEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHeeSig\ type bigWig 1.000000 120281.000000\ wgEncodeUwHistoneHepg2H3k27me3StdPkRep1 HepG H3K27M3 Pk 1 narrowPeak HepG2 H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 83 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HepG H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t2HEPG2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k27me3StdPkRep1\ type narrowPeak\ wgEncodeUwAffyExonArrayHipeSimpleSignalRep1 HIPEpiC 1 broadPeak HIPEpiC Exon array Signal Rep 1 from ENCODE/UW 0 83 0 0 0 127 127 127 0 0 0 expression 1 longLabel HIPEpiC Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HIPEpiC 1\ subGroups cellType=t3HIPEPIC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHipeSimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethylRrbsHmecUwSitesRep1 HMEC 1 bed 9 + HMEC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 83 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HMEC 1\ subGroups cellType=t3HMEC obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHmecUwSitesRep1\ type bed 9 +\ wgEncodeAwgDnaseDukeHuh7UniPk Huh7 DNase narrowPeak Huh7 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 83 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Huh7 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Huh7 DNase\ subGroups tier=a30 cellType=Huh-7\ track wgEncodeAwgDnaseDukeHuh7UniPk\ wgEncodeGisRnaPetHuvecNucleusPapMinusRawRep1 HUVE nucl pA+ - 1 bigWig 1.000000 31077.000000 HUVEC nucleus polyA+ clone-free RNA PET Minus signal Rep 1 from ENCODE/GIS 2 83 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC nucleus polyA+ clone-free RNA PET Minus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel HUVE nucl pA+ - 1\ subGroups view=v2MinusRawSignal cellType=bHUVEC cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHuvecNucleusPapMinusRawRep1\ type bigWig 1.000000 31077.000000\ wgEncodeCaltechRnaSeqHuvecR2x75Il200AlignsRep1V2 HUVEC 2x75 A 1 bam HUVEC 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 83 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel HUVEC 2x75 A 1\ subGroups view=Aligns cellType=t2HUVEC insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHuvecR2x75Il200AlignsRep1V2\ type bam\ wgEncodeBroadHistoneK562Cbx2Pk K562 CBX2 broadPeak K562 CBX2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 83 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 CBX2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 CBX2\ subGroups view=Peaks factor=CBX2 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Cbx2Pk\ type broadPeak\ wgEncodeRikenCageK562NucleusPapMinusSignalRep1 K562 nucl pA+ - 1 bigWig 0.050000 16401.419922 K562 nucleus polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 83 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleus polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal on\ shortLabel K562 nucl pA+ - 1\ subGroups view=MinusRawSignal cellType=t1K562 localization=nucleus rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageK562NucleusPapMinusSignalRep1\ type bigWig 0.050000 16401.419922\ pgNA19017 LWK NA19017 pgSnp LWK NA19017 (Complete Genomics) 0 83 0 0 0 127 127 127 0 0 0 varRep 1 longLabel LWK NA19017 (Complete Genomics)\ parent pgSnpCg\ shortLabel LWK NA19017\ subGroups view=C_CG id=CF_div_GS19017 type=SNP\ track pgNA19017\ wgEncodeOpenChromChipMcf7CtcfEstroSig MCF-7 est CTCF DS bigWig 0.000000 4.305300 MCF-7 estrogen CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 83 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 estrogen CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel MCF-7 est CTCF DS\ subGroups treatment=ESTRO view=SIG factor=CTCF cellType=t2MCF7\ track wgEncodeOpenChromChipMcf7CtcfEstroSig\ type bigWig 0.000000 4.305300\ wgEncodeOpenChromFaireMrtttc549Sig MRT TTC549 F DS bigWig 0.000000 0.664800 MRT TTC549 FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 83 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MRT TTC549 FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel MRT TTC549 F DS\ subGroups view=SIG cellType=t3MRTTTC549 treatment=AANONE\ track wgEncodeOpenChromFaireMrtttc549Sig\ type bigWig 0.000000 0.664800\ wgEncodeHaibGenotypeSkmcRegionsRep2 SKMC 2 bed 9 + SKMC Copy number variants Replicate 2 from ENCODE/HAIB 0 83 0 0 0 127 127 127 0 0 0 varRep 1 longLabel SKMC Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel SKMC 2\ subGroups cellType=t3SKMC obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeSkmcRegionsRep2\ type bed 9 +\ wgEncodeHaibRnaSeqU87RawRep2V2 U87 2 bigWig 1.000000 70252.000000 U87 RNA-seq Raw Signal Rep 2 from ENCODE/HAIB 2 83 0 0 0 127 127 127 0 0 0 expression 0 longLabel U87 RNA-seq Raw Signal Rep 2 from ENCODE/HAIB\ origAssembly hg18\ parent wgEncodeHaibRnaSeqViewSignal off\ shortLabel U87 2\ subGroups view=RawSignal cellType=t3U87 treatment=zNONE rep=rep2\ track wgEncodeHaibRnaSeqU87RawRep2V2\ type bigWig 1.000000 70252.000000\ wgEncodeCshlShortRnaSeqA549CytosolCiptapContigs A549 cyto CIP C bed 6 A549 CIP-TAP cytosol small RNA-seq Contigs from ENCODE/CSHL 2 84 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 CIP-TAP cytosol small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel A549 cyto CIP C\ subGroups view=Contigs rep=Pooled cellType=t2A549 localization=CYTOSOL protocol=CIPTAP rank=none\ track wgEncodeCshlShortRnaSeqA549CytosolCiptapContigs\ type bed 6\ wgEncodeUwTfbsAg10803CtcfStdHotspotsRep2 AG03 CTCF Ht 2 broadPeak AG10803 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 84 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel AG03 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3AG10803 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAg10803CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseAg04449RawRep2 AG04449 Sg 2 bigWig 1.000000 35692.000000 AG04449 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 84 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04449 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel AG04449 Sg 2\ subGroups view=zRSig cellType=t3AG04449 rep=rep2 treatment=None\ track wgEncodeUwDnaseAg04449RawRep2\ type bigWig 1.000000 35692.000000\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_ctss_rev AorticSmsToIL1b_03hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_reverse 0 84 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep1%20%28LK49%29.CNhs13355.12658-134I3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12658-134I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_tpm_rev AorticSmsToIL1b_03hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_reverse 1 84 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep1%20%28LK49%29.CNhs13355.12658-134I3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12658-134I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3\ urlLabel FANTOM5 Details:\ wgEncodeUwRepliSeqBg02esS3PctSignalRep1 BG02ES S3 1 bigWig 1.000000 100.000000 BG02ES S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 84 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BG02ES S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BG02ES S3 1\ subGroups view=v1PctSignal cellType=t3BG02ES phase=p4S3 rep=rep1\ track wgEncodeUwRepliSeqBg02esS3PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseCerebrumfrontalocBaseOverlapSignal Cerbrm frnt OS bigWig 0.000000 231.000000 Cerebrum frontal OC DNaseI HS Overlap Signal from ENCODE/Duke 2 84 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Cerebrum frontal OC DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Cerbrm frnt OS\ subGroups view=SIGBO cellType=t3CEREBRUMFRONTALOC treatment=zNONE\ track wgEncodeOpenChromDnaseCerebrumfrontalocBaseOverlapSignal\ type bigWig 0.000000 231.000000\ encTfChipPkENCFF012JXJ GM12878 BACH1 narrowPeak Transcription Factor ChIP-seq Peaks of BACH1 in GM12878 from ENCODE 3 (ENCFF012JXJ) 1 84 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of BACH1 in GM12878 from ENCODE 3 (ENCFF012JXJ)\ parent encTfChipPk off\ shortLabel GM12878 BACH1\ subGroups cellType=GM12878 factor=BACH1\ track encTfChipPkENCFF012JXJ\ wgEncodeAwgTfbsHaibGm12878Yy1sc281Pcr1xUniPk GM12878 YY1 h narrowPeak GM12878 TFBS Uniform Peaks of YY1_(SC-281) from ENCODE/HudsonAlpha/Analysis 1 84 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of YY1_(SC-281) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 YY1 h\ subGroups tier=a10 cellType=a10GM12878 factor=YY1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Yy1sc281Pcr1xUniPk\ wgEncodeHaibTfbsGm12878NrsfPcr1xRawRep1 GM78 NRSF PCR1 1 bigWig 0.274588 164.820999 GM12878 NRSF PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 84 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 NRSF PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 NRSF PCR1 1\ subGroups view=RawSignal factor=NRSF cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878NrsfPcr1xRawRep1\ type bigWig 0.274588 164.820999\ wgEncodeSydhTfbsGm12878Stat3IggmusSig GM78 STA3 IgM bigWig 1.000000 10782.000000 GM12878 STAT3 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 84 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 STAT3 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 STA3 IgM\ subGroups view=Signal factor=STAT3 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Stat3IggmusSig\ type bigWig 1.000000 10782.000000\ wgEncodeCshlLongRnaSeqH1hescNucleusPamContigsV2 H1hSC nuc pA- C bed 6 + H1-hESC nucleus polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 84 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC nucleus polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel H1hSC nuc pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1H1HESC localization=NUCLEUS rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqH1hescNucleusPamContigsV2\ type bed 6 +\ wgEncodeDukeAffyExonH7esSimpleSignalRep2 H7-hESC 2 bigBed 6 + H7-hESC Exon array Signal Rep 2 from ENCODE/Duke 0 84 0 0 0 127 127 127 1 0 0 expression 1 longLabel H7-hESC Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel H7-hESC 2\ subGroups cellType=t3H7HESC treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonH7esSimpleSignalRep2\ type bigBed 6 +\ wgEncodeUwDgfHeeRaw HEEpiC Raw bigWig 1.000000 408862.000000 HEEpiC DNaseI DGF Raw Signal from ENCODE/UW 0 84 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEEpiC DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HEEpiC Raw\ subGroups view=zRaw cellType=t3HEEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHeeRaw\ type bigWig 1.000000 408862.000000\ wgEncodeUwHistoneHepg2H3k27me3StdRawRep1 HepG H3K27M3 Sg 1 bigWig 1.000000 2797.000000 HepG2 H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 84 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HepG H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t2HEPG2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k27me3StdRawRep1\ type bigWig 1.000000 2797.000000\ wgEncodeUwAffyExonArrayHipeSimpleSignalRep2 HIPEpiC 2 broadPeak HIPEpiC Exon array Signal Rep 2 from ENCODE/UW 0 84 0 0 0 127 127 127 0 0 0 expression 1 longLabel HIPEpiC Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HIPEpiC 2\ subGroups cellType=t3HIPEPIC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHipeSimpleSignalRep2\ type broadPeak\ wgEncodeHaibMethylRrbsHmecUwSitesRep2 HMEC 2 bed 9 + HMEC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 84 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HMEC 2\ subGroups cellType=t3HMEC obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHmecUwSitesRep2\ type bed 9 +\ wgEncodeAwgDnaseDukeHuh75UniPk Huh7.5 DNase narrowPeak Huh7.5 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 84 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Huh7.5 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Huh7.5 DNase\ subGroups tier=a30 cellType=Huh-75\ track wgEncodeAwgDnaseDukeHuh75UniPk\ wgEncodeGisRnaPetHuvecNucleusPapPlusRawRep1 HUVE nucl pA+ + 1 bigWig 1.000000 582351.000000 HUVEC nucleus polyA+ clone-free RNA PET Plus signal Rep 1 from ENCODE/GIS 2 84 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC nucleus polyA+ clone-free RNA PET Plus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel HUVE nucl pA+ + 1\ subGroups view=v2PlusRawSignal cellType=bHUVEC cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHuvecNucleusPapPlusRawRep1\ type bigWig 1.000000 582351.000000\ wgEncodeCaltechRnaSeqHuvecR2x75Il200AlignsRep2V2 HUVEC 2x75 A 2 bam HUVEC 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 84 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel HUVEC 2x75 A 2\ subGroups view=Aligns cellType=t2HUVEC insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHuvecR2x75Il200AlignsRep2V2\ type bam\ wgEncodeBroadHistoneK562Cbx2Sig K562 CBX2 bigWig 0.040000 341.279999 K562 CBX2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 84 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 CBX2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 CBX2\ subGroups view=Signal factor=CBX2 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Cbx2Sig\ type bigWig 0.040000 341.279999\ wgEncodeRikenCageK562NucleusPapMinusSignalRep2 K562 nucl pA+ - 2 bigWig 0.050000 10692.429688 K562 nucleus polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 84 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleus polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel K562 nucl pA+ - 2\ subGroups view=MinusRawSignal cellType=t1K562 localization=nucleus rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageK562NucleusPapMinusSignalRep2\ type bigWig 0.050000 10692.429688\ pgNA19017indel LWK NA19017 indel pgSnp LWK NA19017 indel (Complete Genomics) 0 84 0 0 0 127 127 127 0 0 0 varRep 1 longLabel LWK NA19017 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel LWK NA19017 indel\ subGroups view=C_CG id=CF_div_GS19017 type=Indel\ track pgNA19017indel\ wgEncodeOpenChromChipMcf7CtcfEstroBaseOverlapSignal MCF-7 est CTCF OS bigWig 0.000000 4381.000000 MCF-7 estrogen CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 84 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 estrogen CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel MCF-7 est CTCF OS\ subGroups treatment=ESTRO view=SIGBO factor=CTCF cellType=t2MCF7\ track wgEncodeOpenChromChipMcf7CtcfEstroBaseOverlapSignal\ type bigWig 0.000000 4381.000000\ wgEncodeOpenChromFaireMrtttc549BaseOverlapSignal MRT TTC549 F OS bigWig 0.000000 1553.000000 MRT TTC549 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 84 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MRT TTC549 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel MRT TTC549 F OS\ subGroups view=SIGBO cellType=t3MRTTTC549 treatment=AANONE\ track wgEncodeOpenChromFaireMrtttc549BaseOverlapSignal\ type bigWig 0.000000 1553.000000\ wgEncodeHaibGenotypeSknshraRegionsRep1 SK-N-SH_RA 1 bed 9 + SK-N-SH_RA Copy number variants Replicate 1 from ENCODE/HAIB 0 84 0 0 0 127 127 127 0 0 0 varRep 1 longLabel SK-N-SH_RA Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel SK-N-SH_RA 1\ subGroups cellType=t3SKNSHRA obtainedBy=UW treatment=None rep=rep1\ track wgEncodeHaibGenotypeSknshraRegionsRep1\ type bed 9 +\ wgEncodeHaibRnaSeqU87AlnRep2V2 U87 2 bam U87 RNA-seq Alignments Rep 2 from ENCODE/HAIB 0 84 0 0 0 127 127 127 0 0 0 expression 1 longLabel U87 RNA-seq Alignments Rep 2 from ENCODE/HAIB\ origAssembly hg18\ parent wgEncodeHaibRnaSeqViewAlignments off\ shortLabel U87 2\ subGroups view=Alignments cellType=t3U87 treatment=zNONE rep=rep2\ track wgEncodeHaibRnaSeqU87AlnRep2V2\ type bam\ wgEncodeCshlShortRnaSeqA549CytosolShorttotalCiptapMinusRep3 A549 cyto CIP - 1 bigWig 1.000000 4845573.000000 A549 CIP-TAP cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 85 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 CIP-TAP cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel A549 cyto CIP - 1\ subGroups view=MinusSignal cellType=t2A549 localization=CYTOSOL protocol=CIPTAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqA549CytosolShorttotalCiptapMinusRep3\ type bigWig 1.000000 4845573.000000\ wgEncodeUwTfbsAg10803CtcfStdPkRep2 AG03 CTCF Pk 2 narrowPeak AG10803 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 85 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel AG03 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3AG10803 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAg10803CtcfStdPkRep2\ type narrowPeak\ wgEncodeUwDnaseAg04450HotspotsRep1 AG04450 Ht 1 broadPeak AG04450 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 85 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel AG04450 Ht 1\ subGroups view=Hot cellType=t3AG04450 rep=rep1 treatment=None\ track wgEncodeUwDnaseAg04450HotspotsRep1\ type broadPeak\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_ctss_fwd AorticSmsToIL1b_03hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_forward 0 85 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep2%20%28LK50%29.CNhs13375.12756-136B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12756-136B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_tpm_fwd AorticSmsToIL1b_03hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_forward 1 85 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep2%20%28LK50%29.CNhs13375.12756-136B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12756-136B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2\ urlLabel FANTOM5 Details:\ wgEncodeUwRepliSeqBg02esS4PctSignalRep1 BG02ES S4 1 bigWig 1.000000 100.000000 BG02ES S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 85 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BG02ES S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BG02ES S4 1\ subGroups view=v1PctSignal cellType=t3BG02ES phase=p5S4 rep=rep1\ track wgEncodeUwRepliSeqBg02esS4PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseChorionPk Chorion Pk narrowPeak Chorion DNaseI HS Peaks from ENCODE/Duke 3 85 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Chorion DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Chorion Pk\ subGroups view=Peaks cellType=t3CHORION treatment=zNONE\ track wgEncodeOpenChromDnaseChorionPk\ type narrowPeak\ encTfChipPkENCFF593FBF GM12878 BATF narrowPeak Transcription Factor ChIP-seq Peaks of BATF in GM12878 from ENCODE 3 (ENCFF593FBF) 1 85 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of BATF in GM12878 from ENCODE 3 (ENCFF593FBF)\ parent encTfChipPk on\ shortLabel GM12878 BATF\ subGroups cellType=GM12878 factor=BATF\ track encTfChipPkENCFF593FBF\ wgEncodeAwgTfbsSydhGm12878Yy1UniPk GM12878 YY1 c narrowPeak GM12878 TFBS Uniform Peaks of YY1 from ENCODE/USC/Analysis 1 85 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of YY1 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 YY1 c\ subGroups tier=a10 cellType=a10GM12878 factor=YY1 lab=USC\ track wgEncodeAwgTfbsSydhGm12878Yy1UniPk\ wgEncodeHaibTfbsGm12878NrsfPcr1xPkRep2 GM78 NRSF PCR1 2 broadPeak GM12878 NRSF PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 85 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 NRSF PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 NRSF PCR1 2\ subGroups view=Peaks factor=NRSF cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878NrsfPcr1xPkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12878Tblr1ab24550IggmusPk GM78 TBLR1 IgM narrowPeak GM12878 TBLR1 AB24550 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 85 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TBLR1 AB24550 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 TBLR1 IgM\ subGroups view=Peaks factor=TBLR1AB24550 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Tblr1ab24550IggmusPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqH1hescNucleusPamJunctions H1hSC nuc pA- J bed 6 + H1-hESC nucleus polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 85 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC nucleus polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel H1hSC nuc pA- J\ subGroups view=Junctions cellType=t1H1HESC localization=NUCLEUS rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqH1hescNucleusPamJunctions\ type bed 6 +\ wgEncodeDukeAffyExonH7esSimpleSignalRep3 H7-hESC 3 bigBed 6 + H7-hESC Exon array Signal Rep 3 from ENCODE/Duke 0 85 0 0 0 127 127 127 1 0 0 expression 1 longLabel H7-hESC Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel H7-hESC 3\ subGroups cellType=t3H7HESC treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonH7esSimpleSignalRep3\ type bigBed 6 +\ wgEncodeUwHistoneHepg2H3k27me3StdHotspotsRep2 HepG H3K27M3 Ht 2 broadPeak HepG2 H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 85 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HepG H3K27M3 Ht 2\ subGroups view=Hot factor=H3K27ME3 cellType=t2HEPG2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k27me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDgfHffHotspots HFF Hot broadPeak HFF DNaseI DGF Hotspots from ENCODE/UW 0 85 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HFF Hot\ subGroups view=Hotspots cellType=t3HFF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHffHotspots\ type broadPeak\ wgEncodeUwAffyExonArrayHl60SimpleSignalRep1 HL-60 1 broadPeak HL-60 Exon array Signal Rep 1 from ENCODE/UW 0 85 0 0 0 127 127 127 0 0 0 expression 1 longLabel HL-60 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HL-60 1\ subGroups cellType=t3HL60 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHl60SimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethylRrbsHnpceUwSitesRep1 HNPCEpiC 1 bed 9 + HNPCEpiC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 85 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HNPCEpiC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HNPCEpiC 1\ subGroups cellType=t3HNPCEPIC obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHnpceUwSitesRep1\ type bed 9 +\ wgEncodeGisRnaPetHuvecNucleusPapAlnRep1 HUVE nucl pA+ A 1 bam HUVEC nucleus polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS 0 85 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC nucleus polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel HUVE nucl pA+ A 1\ subGroups view=v3Alignments cellType=bHUVEC cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetHuvecNucleusPapAlnRep1\ type bam\ wgEncodeCaltechRnaSeqHuvecR2x75Th1014Il200SigRep1V4 HUVEC 2x75 Sg 1 bigWig 0.025000 140203.156250 HUVEC 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech 2 85 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel HUVEC 2x75 Sg 1\ subGroups view=Signal cellType=t2HUVEC insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHuvecR2x75Th1014Il200SigRep1V4\ type bigWig 0.025000 140203.156250\ wgEncodeAwgDnaseDukeIpsUniPk iPS DNase narrowPeak iPS DNaseI HS Uniform Peaks from ENCODE/Analysis 1 85 0 0 0 127 127 127 1 0 0 regulation 1 longLabel iPS DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel iPS DNase\ subGroups tier=a30 cellType=IPS\ track wgEncodeAwgDnaseDukeIpsUniPk\ wgEncodeBroadHistoneK562Cbx3sc101004Pk K562 CBX3 broadPeak K562 CBX3 (SC-101004) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 85 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 CBX3 (SC-101004) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 CBX3\ subGroups view=Peaks factor=CBX3SC101004 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Cbx3sc101004Pk\ type broadPeak\ wgEncodeRikenCageK562NucleusPapAlnRep1 K562 nucl pA+ A 1 bam K562 nucleus polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 85 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleus polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel K562 nucl pA+ A 1\ subGroups view=Alignments cellType=t1K562 localization=nucleus rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageK562NucleusPapAlnRep1\ type bam\ pgNA19020 LWK NA19020 pgSnp LWK NA19020 (Complete Genomics) 0 85 0 0 0 127 127 127 0 0 0 varRep 1 longLabel LWK NA19020 (Complete Genomics)\ parent pgSnpCg\ shortLabel LWK NA19020\ subGroups view=C_CG id=CF_div_GS19020 type=SNP\ track pgNA19020\ wgEncodeOpenChromChipMcf7CtcfSerumstvdPkRep1 MCF-7 CTCF stv Pk narrowPeak MCF-7 serum starved CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 85 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 serum starved CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel MCF-7 CTCF stv Pk\ subGroups view=Peaks factor=CTCF cellType=t2MCF7 treatment=SERUMSTAVD\ track wgEncodeOpenChromChipMcf7CtcfSerumstvdPkRep1\ type narrowPeak\ wgEncodeOpenChromFaireNhaPk NH-A FAIRE Pk narrowPeak NH-A FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 85 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NH-A FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel NH-A FAIRE Pk\ subGroups view=Peaks cellType=t3NHA treatment=AANONE\ track wgEncodeOpenChromFaireNhaPk\ type narrowPeak\ wgEncodeHaibGenotypeSknshraRegionsRep2 SK-N-SH_RA 2 bed 9 + SK-N-SH_RA Copy number variants Replicate 2 from ENCODE/HAIB 0 85 0 0 0 127 127 127 0 0 0 varRep 1 longLabel SK-N-SH_RA Copy number variants Replicate 2 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel SK-N-SH_RA 2\ subGroups cellType=t3SKNSHRA obtainedBy=UW treatment=None rep=rep2\ track wgEncodeHaibGenotypeSknshraRegionsRep2\ type bed 9 +\ wgEncodeCshlShortRnaSeqA549CytosolShorttotalCiptapMinusRep4 A549 cyto CIP - 2 bigWig 1.000000 39285896.000000 A549 CIP-TAP cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 86 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 CIP-TAP cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel A549 cyto CIP - 2\ subGroups view=MinusSignal cellType=t2A549 localization=CYTOSOL protocol=CIPTAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqA549CytosolShorttotalCiptapMinusRep4\ type bigWig 1.000000 39285896.000000\ wgEncodeUwTfbsAg10803CtcfStdRawRep2 AG03 CTCF Sg 2 bigWig 1.000000 21460.000000 AG10803 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 86 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG10803 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AG03 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3AG10803 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAg10803CtcfStdRawRep2\ type bigWig 1.000000 21460.000000\ wgEncodeUwDnaseAg04450PkRep1 AG04450 Pk 1 narrowPeak AG04450 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 86 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel AG04450 Pk 1\ subGroups view=Peaks cellType=t3AG04450 rep=rep1 treatment=None\ track wgEncodeUwDnaseAg04450PkRep1\ type narrowPeak\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_ctss_rev AorticSmsToIL1b_03hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_reverse 0 86 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep2%20%28LK50%29.CNhs13375.12756-136B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12756-136B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_tpm_rev AorticSmsToIL1b_03hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_reverse 1 86 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep2%20%28LK50%29.CNhs13375.12756-136B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12756-136B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2\ urlLabel FANTOM5 Details:\ wgEncodeHaibGenotypeBcsmallintestine0111002RegionsRep1 BC Sm Intest 1 bed 9 + BC_Small_Intestine_01-11002 Copy number variants Replicate 1 from ENCODE/HAIB 0 86 0 0 0 127 127 127 0 0 0 varRep 1 longLabel BC_Small_Intestine_01-11002 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel BC Sm Intest 1\ subGroups cellType=t3SMALLINTESTINEBC0111002 obtainedBy=HudsonAlpha treatment=None rep=rep1\ track wgEncodeHaibGenotypeBcsmallintestine0111002RegionsRep1\ type bed 9 +\ wgEncodeUwRepliSeqBg02esG2PctSignalRep1 BG02ES G2 1 bigWig 1.000000 100.000000 BG02ES G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 86 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BG02ES G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BG02ES G2 1\ subGroups view=v1PctSignal cellType=t3BG02ES phase=p6G2 rep=rep1\ track wgEncodeUwRepliSeqBg02esG2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseChorionSig Chorion DS bigWig 0.000000 1.413200 Chorion DNaseI HS Density Signal from ENCODE/Duke 2 86 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Chorion DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Chorion DS\ subGroups view=SIG cellType=t3CHORION treatment=zNONE\ track wgEncodeOpenChromDnaseChorionSig\ type bigWig 0.000000 1.413200\ encTfChipPkENCFF468MFY GM12878 BCL11A narrowPeak Transcription Factor ChIP-seq Peaks of BCL11A in GM12878 from ENCODE 3 (ENCFF468MFY) 1 86 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of BCL11A in GM12878 from ENCODE 3 (ENCFF468MFY)\ parent encTfChipPk off\ shortLabel GM12878 BCL11A\ subGroups cellType=GM12878 factor=BCL11A\ track encTfChipPkENCFF468MFY\ wgEncodeAwgTfbsHaibGm12878Zbtb33Pcr1xUniPk GM12878 ZBTB33 narrowPeak GM12878 TFBS Uniform Peaks of ZBTB33 from ENCODE/HudsonAlpha/Analysis 1 86 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of ZBTB33 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 ZBTB33\ subGroups tier=a10 cellType=a10GM12878 factor=ZBTB33 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Zbtb33Pcr1xUniPk\ wgEncodeHaibTfbsGm12878NrsfPcr1xRawRep2 GM78 NRSF PCR1 2 bigWig 0.252183 615.265015 GM12878 NRSF PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 86 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 NRSF PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 NRSF PCR1 2\ subGroups view=RawSignal factor=NRSF cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878NrsfPcr1xRawRep2\ type bigWig 0.252183 615.265015\ wgEncodeSydhTfbsGm12878Tblr1ab24550IggmusSig GM78 TBLR1 IgM bigWig 1.000000 12597.000000 GM12878 TBLR1 AB24550 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 86 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 TBLR1 AB24550 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 TBLR1 IgM\ subGroups view=Signal factor=TBLR1AB24550 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Tblr1ab24550IggmusSig\ type bigWig 1.000000 12597.000000\ wgEncodeCshlLongRnaSeqH1hescNucleusLongnonpolyaMinusRawSigRep2 H1hSC nuc pA- - 2 bigWig 1.000000 3290208.000000 H1-hESC nucleus polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 86 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC nucleus polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel H1hSC nuc pA- - 2\ subGroups view=MinusSignal cellType=t1H1HESC localization=NUCLEUS rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescNucleusLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 3290208.000000\ wgEncodeDukeAffyExonH9esSimpleSignalRep1V2 H9ES 1 bigBed 6 + H9ES Exon array Signal Rep 1 from ENCODE/Duke 0 86 0 0 0 127 127 127 1 0 0 expression 1 longLabel H9ES Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel H9ES 1\ subGroups cellType=t3H9ES treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonH9esSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeUwHistoneHepg2H3k27me3StdPkRep2 HepG H3K27M3 Pk 2 narrowPeak HepG2 H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 86 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HepG H3K27M3 Pk 2\ subGroups view=Peaks factor=H3K27ME3 cellType=t2HEPG2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k27me3StdPkRep2\ type narrowPeak\ wgEncodeUwDgfHffPk HFF Pk narrowPeak HFF DNaseI DGF Peaks from ENCODE/UW 0 86 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HFF Pk\ subGroups view=Peaks cellType=t3HFF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHffPk\ type narrowPeak\ wgEncodeUwAffyExonArrayHl60SimpleSignalRep2 HL-60 2 broadPeak HL-60 Exon array Signal Rep 2 from ENCODE/UW 0 86 0 0 0 127 127 127 0 0 0 expression 1 longLabel HL-60 Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HL-60 2\ subGroups cellType=t3HL60 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHl60SimpleSignalRep2\ type broadPeak\ wgEncodeHaibMethylRrbsHnpceUwSitesRep2 HNPCEpiC 2 bed 9 + HNPCEpiC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 86 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HNPCEpiC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HNPCEpiC 2\ subGroups cellType=t3HNPCEPIC obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHnpceUwSitesRep2\ type bed 9 +\ wgEncodeCaltechRnaSeqHuvecR2x75Th1014Il200SigRep2V4 HUVEC 2x75 Sg 2 bigWig 0.025000 109492.835938 HUVEC 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech 2 86 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel HUVEC 2x75 Sg 2\ subGroups view=Signal cellType=t2HUVEC insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHuvecR2x75Th1014Il200SigRep2V4\ type bigWig 0.025000 109492.835938\ wgEncodeGisRnaPetImr90CellPapClusters IMR9 cell pA+ bed 6 + IMR90 whole cell polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS 2 86 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 whole cell polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel IMR9 cell pA+\ subGroups view=v1Clusters rep=rep1 rank=none cellType=bIMR90 cloned=Free localization=cell rnaExtract=PAP\ track wgEncodeGisRnaPetImr90CellPapClusters\ type bed 6 +\ wgEncodeAwgDnaseDukeIshikawaestradiolUniPk Ishika(Est) DNase narrowPeak Ishikawa (Estradiol) DNaseI HS Uniform Peaks from ENCODE/Analysis 1 86 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Ishikawa (Estradiol) DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Ishika(Est) DNase\ subGroups tier=a30 cellType=Ishikawa-Estr\ track wgEncodeAwgDnaseDukeIshikawaestradiolUniPk\ wgEncodeBroadHistoneK562Cbx3sc101004Sig K562 CBX3 bigWig 0.040000 400.000000 K562 CBX3 (SC-101004) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 86 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 CBX3 (SC-101004) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 CBX3\ subGroups view=Signal factor=CBX3SC101004 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Cbx3sc101004Sig\ type bigWig 0.040000 400.000000\ wgEncodeRikenCageK562NucleusPapAlnRep2 K562 nucl pA+ A 2 bam K562 nucleus polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 86 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleus polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel K562 nucl pA+ A 2\ subGroups view=Alignments cellType=t1K562 localization=nucleus rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageK562NucleusPapAlnRep2\ type bam\ pgNA19020indel LWK NA19020 indel pgSnp LWK NA19020 indel (Complete Genomics) 0 86 0 0 0 127 127 127 0 0 0 varRep 1 longLabel LWK NA19020 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel LWK NA19020 indel\ subGroups view=C_CG id=CF_div_GS19020 type=Indel\ track pgNA19020indel\ wgEncodeOpenChromChipMcf7CtcfSerumstvdSig MCF-7 CTCF stv DS bigWig 0.000000 8.219700 MCF-7 serum starved CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 86 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 serum starved CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel MCF-7 CTCF stv DS\ subGroups view=SIG factor=CTCF cellType=t2MCF7 treatment=SERUMSTAVD\ track wgEncodeOpenChromChipMcf7CtcfSerumstvdSig\ type bigWig 0.000000 8.219700\ wgEncodeOpenChromFaireNhaSig NH-A FAIRE DS bigWig 0.000000 0.459700 NH-A FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 86 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NH-A FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel NH-A FAIRE DS\ subGroups view=SIG cellType=t3NHA treatment=AANONE\ track wgEncodeOpenChromFaireNhaSig\ type bigWig 0.000000 0.459700\ wgEncodeCshlShortRnaSeqA549CytosolShorttotalCiptapPlusRep3 A549 cyto CIP + 1 bigWig 1.000000 4828783.000000 A549 CIP-TAP cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 87 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 CIP-TAP cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 cyto CIP + 1\ subGroups view=PlusSignal cellType=t2A549 localization=CYTOSOL protocol=CIPTAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqA549CytosolShorttotalCiptapPlusRep3\ type bigWig 1.000000 4828783.000000\ wgEncodeUwTfbsAg10803InputStdRawRep1 AG03 In Sg 1 bigWig 1.000000 21401.000000 AG10803 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 87 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG10803 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AG03 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3AG10803 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAg10803InputStdRawRep1\ type bigWig 1.000000 21401.000000\ wgEncodeUwDnaseAg04450RawRep1 AG04450 Sg 1 bigWig 1.000000 23646.000000 AG04450 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 87 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04450 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel AG04450 Sg 1\ subGroups view=zRSig cellType=t3AG04450 rep=rep1 treatment=None\ track wgEncodeUwDnaseAg04450RawRep1\ type bigWig 1.000000 23646.000000\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_ctss_fwd AorticSmsToIL1b_04hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_forward 0 87 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep1%20%28LK52%29.CNhs13682.12659-134I4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12659-134I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_tpm_fwd AorticSmsToIL1b_04hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_forward 1 87 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep1%20%28LK52%29.CNhs13682.12659-134I4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12659-134I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4\ urlLabel FANTOM5 Details:\ wgEncodeUwRepliSeqBg02esPkRep1 BG02ES Pk 1 bed 9 BG02ES Repli-seq Peaks Rep 1 from ENCODE/UW 0 87 0 0 0 127 127 127 1 0 0 regulation 1 longLabel BG02ES Repli-seq Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPeaks off\ shortLabel BG02ES Pk 1\ subGroups view=v2Peaks cellType=t3BG02ES phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqBg02esPkRep1\ type bed 9\ wgEncodeOpenChromDnaseChorionBaseOverlapSignal Chorion OS bigWig 0.000000 286.000000 Chorion DNaseI HS Overlap Signal from ENCODE/Duke 2 87 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Chorion DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Chorion OS\ subGroups view=SIGBO cellType=t3CHORION treatment=zNONE\ track wgEncodeOpenChromDnaseChorionBaseOverlapSignal\ type bigWig 0.000000 286.000000\ encTfChipPkENCFF625SHY GM12878 BCL3 narrowPeak Transcription Factor ChIP-seq Peaks of BCL3 in GM12878 from ENCODE 3 (ENCFF625SHY) 1 87 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of BCL3 in GM12878 from ENCODE 3 (ENCFF625SHY)\ parent encTfChipPk off\ shortLabel GM12878 BCL3\ subGroups cellType=GM12878 factor=BCL3\ track encTfChipPkENCFF625SHY\ wgEncodeAwgTfbsHaibGm12878Zeb1sc25388V0416102UniPk GM12878 ZEB1 narrowPeak GM12878 TFBS Uniform Peaks of ZEB1_(SC-25388) from ENCODE/HudsonAlpha/Analysis 1 87 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of ZEB1_(SC-25388) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 ZEB1\ subGroups tier=a10 cellType=a10GM12878 factor=ZEB1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12878Zeb1sc25388V0416102UniPk\ wgEncodeHaibTfbsGm12878NrsfPcr2xPkRep1 GM78 NRSF PCR2 1 broadPeak GM12878 NRSF PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 87 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 NRSF PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 NRSF PCR2 1\ subGroups view=Peaks factor=NRSF cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878NrsfPcr2xPkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878TbpIggmusPk GM78 TBP IgM narrowPeak GM12878 TBP IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 87 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TBP IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks on\ shortLabel GM78 TBP IgM\ subGroups view=Peaks factor=TBP cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878TbpIggmusPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqH1hescNucleusLongnonpolyaPlusRawSigRep2 H1hSC nuc pA- + 2 bigWig 1.000000 8968383.000000 H1-hESC nucleus polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 87 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC nucleus polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel H1hSC nuc pA- + 2\ subGroups view=PlusSignal cellType=t1H1HESC localization=NUCLEUS rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescNucleusLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 8968383.000000\ wgEncodeDukeAffyExonH9esSimpleSignalRep2 H9ES 2 bigBed 6 + H9ES Exon array Signal Rep 2 from ENCODE/Duke 0 87 0 0 0 127 127 127 1 0 0 expression 1 longLabel H9ES Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel H9ES 2\ subGroups cellType=t3H9ES treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonH9esSimpleSignalRep2\ type bigBed 6 +\ wgEncodeUwHistoneHepg2H3k27me3StdRawRep2 HepG H3K27M3 Sg 2 bigWig 1.000000 3019.000000 HepG2 H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 87 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HepG H3K27M3 Sg 2\ subGroups view=zRSig factor=H3K27ME3 cellType=t2HEPG2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k27me3StdRawRep2\ type bigWig 1.000000 3019.000000\ wgEncodeUwDgfHffSig HFF Sig bigWig 1.000000 25572.000000 HFF DNaseI DGF Per-base Signal from ENCODE/UW 2 87 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HFF DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HFF Sig\ subGroups view=Signal cellType=t3HFF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHffSig\ type bigWig 1.000000 25572.000000\ wgEncodeUwAffyExonArrayHmecSimpleSignalRep1 HMEC 1 broadPeak HMEC Exon array Signal Rep 1 from ENCODE/UW 0 87 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMEC Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMEC 1\ subGroups cellType=t3HMEC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHmecSimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethylRrbsHpaeUwSitesRep1 HPAEpiC 1 bed 9 + HPAEpiC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 87 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAEpiC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HPAEpiC 1\ subGroups cellType=t3HPAEPIC obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHpaeUwSitesRep1\ type bed 9 +\ wgEncodeCaltechRnaSeqHuvecR2x75Il200SplicesRep1V2 HUVEC 2x75 Sp 1 bam HUVEC 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 87 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel HUVEC 2x75 Sp 1\ subGroups view=Splices cellType=t2HUVEC insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHuvecR2x75Il200SplicesRep1V2\ type bam\ wgEncodeGisRnaPetImr90CellPapMinusRawRep1 IMR9 cell pA+ - 1 bigWig 1.000000 787688.000000 IMR90 whole cell polyA+ clone-free RNA PET Minus signal Rep 1 from ENCODE/GIS 2 87 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell polyA+ clone-free RNA PET Minus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel IMR9 cell pA+ - 1\ subGroups view=v2MinusRawSignal cellType=bIMR90 cloned=Free localization=cell rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetImr90CellPapMinusRawRep1\ type bigWig 1.000000 787688.000000\ wgEncodeAwgDnaseDukeIshikawatamoxifenUniPk Ishika(Tam) DNase narrowPeak Ishikawa (Tamoxifen) DNaseI HS Uniform Peaks from ENCODE/Analysis 1 87 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Ishikawa (Tamoxifen) DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Ishika(Tam) DNase\ subGroups tier=a30 cellType=Ishikawa-Tamox\ track wgEncodeAwgDnaseDukeIshikawatamoxifenUniPk\ wgEncodeBroadHistoneK562Cbx8Pk K562 CBX8 broadPeak K562 CBX8 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 87 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 CBX8 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 CBX8\ subGroups view=Peaks factor=CBX8 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Cbx8Pk\ type broadPeak\ wgEncodeRikenCageK562PolysomePamTssHmmV2 K562 poly pA- bed 6 K562 polysome polyA- CAGE TSS HMM from ENCODE/RIKEN 3 87 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 polysome polyA- CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel K562 poly pA-\ subGroups view=TssHmm cellType=t1K562 localization=polysome rnaExtract=pAM rep=rep0 rank=rankP\ track wgEncodeRikenCageK562PolysomePamTssHmmV2\ type bed 6\ pgNA19025 LWK NA19025 pgSnp LWK NA19025 (Complete Genomics) 0 87 0 0 0 127 127 127 0 0 0 varRep 1 longLabel LWK NA19025 (Complete Genomics)\ parent pgSnpCg\ shortLabel LWK NA19025\ subGroups view=C_CG id=CF_div_GS19025 type=SNP\ track pgNA19025\ wgEncodeOpenChromChipMcf7CtcfSerumstvdBaseOverlapSignal MCF-7 CTCF stv OS bigWig 0.000000 4938.000000 MCF-7 serum starved CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 87 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 serum starved CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel MCF-7 CTCF stv OS\ subGroups view=SIGBO factor=CTCF cellType=t2MCF7 treatment=SERUMSTAVD\ track wgEncodeOpenChromChipMcf7CtcfSerumstvdBaseOverlapSignal\ type bigWig 0.000000 4938.000000\ wgEncodeOpenChromFaireNhaBaseOverlapSignal NH-A FAIRE OS bigWig 0.000000 1226.000000 NH-A FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 87 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NH-A FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel NH-A FAIRE OS\ subGroups view=SIGBO cellType=t3NHA treatment=AANONE\ track wgEncodeOpenChromFaireNhaBaseOverlapSignal\ type bigWig 0.000000 1226.000000\ wgEncodeHaibGenotypeT47dRegionsRep2 T-47D 1 bed 9 + T-47D Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB 0 87 0 0 0 127 127 127 0 0 0 varRep 1 longLabel T-47D Copy number variants Replicate 1 (Lab Rep 2) from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel T-47D 1\ subGroups cellType=t3T47D obtainedBy=HudsonAlpha treatment=None rep=rep1\ track wgEncodeHaibGenotypeT47dRegionsRep2\ type bed 9 +\ wgEncodeCshlShortRnaSeqA549CytosolShorttotalCiptapPlusRep4 A549 cyto CIP + 2 bigWig 1.000000 10026360.000000 A549 CIP-TAP cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 88 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 CIP-TAP cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 cyto CIP + 2\ subGroups view=PlusSignal cellType=t2A549 localization=CYTOSOL protocol=CIPTAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqA549CytosolShorttotalCiptapPlusRep4\ type bigWig 1.000000 10026360.000000\ wgEncodeUwDnaseAg04450HotspotsRep2 AG04450 Ht 2 broadPeak AG04450 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 88 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel AG04450 Ht 2\ subGroups view=Hot cellType=t3AG04450 rep=rep2 treatment=None\ track wgEncodeUwDnaseAg04450HotspotsRep2\ type broadPeak\ wgEncodeUwTfbsAoafCtcfStdHotspotsRep1 AoAF CTCF Ht 1 broadPeak AoAF CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 88 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoAF CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel AoAF CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3AOAF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAoafCtcfStdHotspotsRep1\ type broadPeak\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_ctss_rev AorticSmsToIL1b_04hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_reverse 0 88 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep1%20%28LK52%29.CNhs13682.12659-134I4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12659-134I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_tpm_rev AorticSmsToIL1b_04hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_reverse 1 88 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep1%20%28LK52%29.CNhs13682.12659-134I4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12659-134I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4\ urlLabel FANTOM5 Details:\ wgEncodeUwRepliSeqBg02esValleysRep1 BG02ES Vly 1 bed 9 BG02ES Repli-seq Valleys Rep 1 from ENCODE/UW 0 88 0 0 0 127 127 127 1 0 0 regulation 1 longLabel BG02ES Repli-seq Valleys Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewValleys off\ shortLabel BG02ES Vly 1\ subGroups view=v3Valleys cellType=t3BG02ES phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqBg02esValleysRep1\ type bed 9\ wgEncodeOpenChromDnaseCllPk CLL Pk narrowPeak CLL DNaseI HS Peaks from ENCODE/Duke 3 88 0 0 0 127 127 127 1 0 0 regulation 1 longLabel CLL DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel CLL Pk\ subGroups view=Peaks cellType=t3CLL treatment=zNONE\ track wgEncodeOpenChromDnaseCllPk\ type narrowPeak\ encTfChipPkENCFF853SOB GM12878 BHLHE40 1 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in GM12878 from ENCODE 3 (ENCFF853SOB) 1 88 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in GM12878 from ENCODE 3 (ENCFF853SOB)\ parent encTfChipPk off\ shortLabel GM12878 BHLHE40 1\ subGroups cellType=GM12878 factor=BHLHE40\ track encTfChipPkENCFF853SOB\ wgEncodeAwgTfbsSydhGm12878Znf143166181apUniPk GM12878 ZNF143 narrowPeak GM12878 TFBS Uniform Peaks of Znf143_(16618-1-AP) from ENCODE/Stanford/Analysis 1 88 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of Znf143_(16618-1-AP) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 ZNF143\ subGroups tier=a10 cellType=a10GM12878 factor=ZNF143 lab=Stanford\ track wgEncodeAwgTfbsSydhGm12878Znf143166181apUniPk\ wgEncodeHaibTfbsGm12878NrsfPcr2xRawRep1 GM78 NRSF PCR2 1 bigWig 0.170084 245.302994 GM12878 NRSF PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 88 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 NRSF PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 NRSF PCR2 1\ subGroups view=RawSignal factor=NRSF cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878NrsfPcr2xRawRep1\ type bigWig 0.170084 245.302994\ wgEncodeSydhTfbsGm12878TbpIggmusSig GM78 TBP IgM bigWig 0.000000 25521.199219 GM12878 TBP IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 88 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 TBP IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal on\ shortLabel GM78 TBP IgM\ subGroups view=Signal factor=TBP cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878TbpIggmusSig\ type bigWig 0.000000 25521.199219\ wgEncodeCshlLongRnaSeqH1hescNucleusPapAlnRep2 H1hSC nuc pA+ A 2 bam H1-hESC nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 88 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel H1hSC nuc pA+ A 2\ subGroups view=Alignments cellType=t1H1HESC localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescNucleusPapAlnRep2\ type bam\ wgEncodeDukeAffyExonH9esSimpleSignalRep3 H9ES 3 bigBed 6 + H9ES Exon array Signal Rep 3 from ENCODE/Duke 0 88 0 0 0 127 127 127 1 0 0 expression 1 longLabel H9ES Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel H9ES 3\ subGroups cellType=t3H9ES treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonH9esSimpleSignalRep3\ type bigBed 6 +\ wgEncodeUwHistoneHepg2H3k36me3StdHotspotsRep1 HepG H3K36M3 Ht 1 broadPeak HepG2 H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 88 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HepG H3K36M3 Ht 1\ subGroups view=Hot factor=H3K36ME3 cellType=t2HEPG2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k36me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDgfHffRaw HFF Raw bigWig 1.000000 274268.000000 HFF DNaseI DGF Raw Signal from ENCODE/UW 0 88 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HFF DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HFF Raw\ subGroups view=zRaw cellType=t3HFF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHffRaw\ type bigWig 1.000000 274268.000000\ wgEncodeUwAffyExonArrayHmecSimpleSignalRep2 HMEC 2 broadPeak HMEC Exon array Signal Rep 2 from ENCODE/UW 0 88 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMEC Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMEC 2\ subGroups cellType=t3HMEC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHmecSimpleSignalRep2\ type broadPeak\ wgEncodeHaibMethylRrbsHpaeUwSitesRep2 HPAEpiC 2 bed 9 + HPAEpiC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 88 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAEpiC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HPAEpiC 2\ subGroups cellType=t3HPAEPIC obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHpaeUwSitesRep2\ type bed 9 +\ wgEncodeCaltechRnaSeqHuvecR2x75Il200SplicesRep2V2 HUVEC 2x75 Sp 2 bam HUVEC 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 88 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel HUVEC 2x75 Sp 2\ subGroups view=Splices cellType=t2HUVEC insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHuvecR2x75Il200SplicesRep2V2\ type bam\ wgEncodeGisRnaPetImr90CellPapMinusRawRep2 IMR9 cell pA+ - 2 bigWig 1.000000 1356150.000000 IMR90 whole cell polyA+ clone-free RNA PET Minus signal Rep 2 from ENCODE/GIS 2 88 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell polyA+ clone-free RNA PET Minus signal Rep 2 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel IMR9 cell pA+ - 2\ subGroups view=v2MinusRawSignal cellType=bIMR90 cloned=Free localization=cell rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeGisRnaPetImr90CellPapMinusRawRep2\ type bigWig 1.000000 1356150.000000\ wgEncodeAwgDnaseUwJurkatUniPk Jurkat DNase narrowPeak Jurkat DNaseI HS Uniform Peaks from ENCODE/Analysis 1 88 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Jurkat DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Jurkat DNase\ subGroups tier=a30 cellType=Jurkat\ track wgEncodeAwgDnaseUwJurkatUniPk\ wgEncodeBroadHistoneK562Cbx8Sig K562 CBX8 bigWig 0.040000 352.679993 K562 CBX8 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 88 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 CBX8 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 CBX8\ subGroups view=Signal factor=CBX8 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Cbx8Sig\ type bigWig 0.040000 352.679993\ wgEncodeRikenCageK562PolysomePamPlusSignal K562 psom pA- + 1 bigWig 0.040000 4464.319824 K562 polysome polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 88 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 polysome polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel K562 psom pA- + 1\ subGroups view=PlusRawSignal cellType=t1K562 localization=polysome rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageK562PolysomePamPlusSignal\ type bigWig 0.040000 4464.319824\ pgNA19025indel LWK NA19025 indel pgSnp LWK NA19025 indel (Complete Genomics) 0 88 0 0 0 127 127 127 0 0 0 varRep 1 longLabel LWK NA19025 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel LWK NA19025 indel\ subGroups view=C_CG id=CF_div_GS19025 type=Indel\ track pgNA19025indel\ wgEncodeOpenChromChipMcf7CtcfSerumstimPkRep1 MCF-7 CTCF stm Pk narrowPeak MCF-7 serum stim CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 88 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 serum stim CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel MCF-7 CTCF stm Pk\ subGroups view=Peaks factor=CTCF cellType=t2MCF7 treatment=SERUMSTIM\ track wgEncodeOpenChromChipMcf7CtcfSerumstimPkRep1\ type narrowPeak\ wgEncodeOpenChromFaireNhbePk NHBE FAIRE Pk narrowPeak NHBE FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 88 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHBE FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel NHBE FAIRE Pk\ subGroups view=Peaks cellType=t3NHBE treatment=AANONE\ track wgEncodeOpenChromFaireNhbePk\ type narrowPeak\ wgEncodeHaibGenotypeU87RegionsRep1 U87 1 bed 9 + U87 Copy number variants Replicate 1 from ENCODE/HAIB 0 88 0 0 0 127 127 127 0 0 0 varRep 1 longLabel U87 Copy number variants Replicate 1 from ENCODE/HAIB\ parent wgEncodeHaibGenotype off\ shortLabel U87 1\ subGroups cellType=t3U87 obtainedBy=HudsonAlpha treatment=None rep=rep1\ track wgEncodeHaibGenotypeU87RegionsRep1\ type bed 9 +\ wgEncodeCshlShortRnaSeqA549CytosolContigs A549 cyto C bed 6 A549 cytosol small RNA-seq Contigs from ENCODE/CSHL 2 89 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 cytosol small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel A549 cyto C\ subGroups view=Contigs rep=Pooled cellType=t2A549 localization=CYTOSOL protocol=NONE rank=none\ track wgEncodeCshlShortRnaSeqA549CytosolContigs\ type bed 6\ wgEncodeUwDnaseAg04450PkRep2 AG04450 Pk 2 narrowPeak AG04450 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 89 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel AG04450 Pk 2\ subGroups view=Peaks cellType=t3AG04450 rep=rep2 treatment=None\ track wgEncodeUwDnaseAg04450PkRep2\ type narrowPeak\ wgEncodeUwTfbsAoafCtcfStdPkRep1 AoAF CTCF Pk 1 narrowPeak AoAF CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 89 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoAF CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel AoAF CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3AOAF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAoafCtcfStdPkRep1\ type narrowPeak\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_ctss_fwd AorticSmsToIL1b_04hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_forward 0 89 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep2%20%28LK53%29.CNhs13376.12757-136B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12757-136B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_tpm_fwd AorticSmsToIL1b_04hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_forward 1 89 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep2%20%28LK53%29.CNhs13376.12757-136B3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12757-136B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3\ urlLabel FANTOM5 Details:\ wgEncodeUwRepliSeqBg02esWaveSignalRep1 BG02ES Ws 1 bigWig -3.279608 86.164284 BG02ES Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW 2 89 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BG02ES Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewWaveSignal off\ shortLabel BG02ES Ws 1\ subGroups view=v4WaveSignal cellType=t3BG02ES phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqBg02esWaveSignalRep1\ type bigWig -3.279608 86.164284\ wgEncodeOpenChromDnaseCllSig CLL DS bigWig 0.000000 0.697500 CLL DNaseI HS Density Signal from ENCODE/Duke 2 89 0 0 0 127 127 127 1 0 0 regulation 0 longLabel CLL DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel CLL DS\ subGroups view=SIG cellType=t3CLL treatment=zNONE\ track wgEncodeOpenChromDnaseCllSig\ type bigWig 0.000000 0.697500\ encTfChipPkENCFF095GMM GM12878 BHLHE40 2 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in GM12878 from ENCODE 3 (ENCFF095GMM) 1 89 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in GM12878 from ENCODE 3 (ENCFF095GMM)\ parent encTfChipPk off\ shortLabel GM12878 BHLHE40 2\ subGroups cellType=GM12878 factor=BHLHE40\ track encTfChipPkENCFF095GMM\ wgEncodeAwgTfbsSydhGm12878Znf274UniPk GM12878 ZNF274 narrowPeak GM12878 TFBS Uniform Peaks of ZNF274 from ENCODE/USC/Analysis 1 89 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of ZNF274 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 ZNF274\ subGroups tier=a10 cellType=a10GM12878 factor=ZNF274 lab=USC\ track wgEncodeAwgTfbsSydhGm12878Znf274UniPk\ wgEncodeHaibTfbsGm12878NrsfPcr2xPkRep2 GM78 NRSF PCR2 2 broadPeak GM12878 NRSF PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 89 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 NRSF PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 NRSF PCR2 2\ subGroups view=Peaks factor=NRSF cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878NrsfPcr2xPkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12878Tr4StdPk GM78 TR4 Std narrowPeak GM12878 TR4 Standard ChIP-seq Peaks from ENCODE/SYDH 3 89 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TR4 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 TR4 Std\ subGroups view=Peaks factor=TR4 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Tr4StdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqH1hescNucleusPapContigsV2 H1hSC nuc pA+ C bed 6 + H1-hESC nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 89 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel H1hSC nuc pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1H1HESC localization=NUCLEUS rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqH1hescNucleusPapContigsV2\ type bed 6 +\ wgEncodeDukeAffyExonHek293tSimpleSignalRep1 HEK293T 1 bigBed 6 + HEK293T Exon array Signal Rep 1 from ENCODE/Duke 0 89 0 0 0 127 127 127 1 0 0 expression 1 longLabel HEK293T Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HEK293T 1\ subGroups cellType=t3HEK293T treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonHek293tSimpleSignalRep1\ type bigBed 6 +\ wgEncodeUwHistoneHepg2H3k36me3StdPkRep1 HepG H3K36M3 Pk 1 narrowPeak HepG2 H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 89 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HepG H3K36M3 Pk 1\ subGroups view=Peaks factor=H3K36ME3 cellType=t2HEPG2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k36me3StdPkRep1\ type narrowPeak\ wgEncodeUwDgfHgfHotspots HGF Hot broadPeak HGF DNaseI DGF Hotspots from ENCODE/UW 0 89 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HGF DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HGF Hot\ subGroups view=Hotspots cellType=t3HGF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHgfHotspots\ type broadPeak\ wgEncodeUwAffyExonArrayHmfSimpleSignalRep1 HMF 1 broadPeak HMF Exon array Signal Rep 1 from ENCODE/UW 0 89 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMF Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMF 1\ subGroups cellType=t3HMF rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHmfSimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethylRrbsHrceUwSitesRep1 HRCEpiC 1 bed 9 + HRCEpiC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 89 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRCEpiC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HRCEpiC 1\ subGroups cellType=t3HRCEPIC obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHrceUwSitesRep1\ type bed 9 +\ wgEncodeCaltechRnaSeqHuvecR1x75dAlignsRep1V2 HUVEC 1x75D A 1 bam HUVEC single read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 89 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC single read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel HUVEC 1x75D A 1\ subGroups view=Aligns cellType=t2HUVEC insertLength=ilNa readType=r1x75D rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHuvecR1x75dAlignsRep1V2\ type bam\ wgEncodeGisRnaPetImr90CellPapPlusRawRep1 IMR9 cell pA+ + 1 bigWig 1.000000 917538.000000 IMR90 whole cell polyA+ clone-free RNA PET Plus signal Rep 1 from ENCODE/GIS 2 89 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell polyA+ clone-free RNA PET Plus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel IMR9 cell pA+ + 1\ subGroups view=v2PlusRawSignal cellType=bIMR90 cloned=Free localization=cell rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetImr90CellPapPlusRawRep1\ type bigWig 1.000000 917538.000000\ wgEncodeBroadHistoneK562Chd1a301218aStdPk K562 CHD1 broadPeak K562 CHD1 (A301-218A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 89 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 CHD1 (A301-218A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 CHD1\ subGroups view=Peaks factor=CHD1A301218A cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Chd1a301218aStdPk\ type broadPeak\ wgEncodeRikenCageK562PolysomePamMinusSignal K562 psom pA- - 1 bigWig 0.040000 4464.319824 K562 polysome polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 89 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 polysome polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel K562 psom pA- - 1\ subGroups view=MinusRawSignal cellType=t1K562 localization=polysome rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageK562PolysomePamMinusSignal\ type bigWig 0.040000 4464.319824\ wgEncodeAwgDnaseUwdukeLncapUniPk LNCaP DNase narrowPeak LNCaP DNaseI HS Uniform Peaks from ENCODE/Analysis 1 89 0 0 0 127 127 127 1 0 0 regulation 1 longLabel LNCaP DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel LNCaP DNase\ subGroups tier=a30 cellType=LNCaP\ track wgEncodeAwgDnaseUwdukeLncapUniPk\ pgNA19026 LWK NA19026 pgSnp LWK NA19026 (Complete Genomics) 0 89 0 0 0 127 127 127 0 0 0 varRep 1 longLabel LWK NA19026 (Complete Genomics)\ parent pgSnpCg\ shortLabel LWK NA19026\ subGroups view=C_CG id=CF_div_GS19026 type=SNP\ track pgNA19026\ wgEncodeOpenChromChipMcf7CtcfSerumstimSig MCF-7 CTCF stm DS bigWig 0.000000 10.246700 MCF-7 serum stim CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 89 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 serum stim CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel MCF-7 CTCF stm DS\ subGroups view=SIG factor=CTCF cellType=t2MCF7 treatment=SERUMSTIM\ track wgEncodeOpenChromChipMcf7CtcfSerumstimSig\ type bigWig 0.000000 10.246700\ wgEncodeOpenChromFaireNhbeSig NHBE FAIRE DS bigWig 0.000000 0.366700 NHBE FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 89 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHBE FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel NHBE FAIRE DS\ subGroups view=SIG cellType=t3NHBE treatment=AANONE\ track wgEncodeOpenChromFaireNhbeSig\ type bigWig 0.000000 0.366700\ wgEncodeCshlShortRnaSeqA549CytosolShorttotalMinusRep3 A549 cyto - 1 bigWig 1.000000 13784293.000000 A549 cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 90 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel A549 cyto - 1\ subGroups view=MinusSignal cellType=t2A549 localization=CYTOSOL protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqA549CytosolShorttotalMinusRep3\ type bigWig 1.000000 13784293.000000\ wgEncodeUwDnaseAg04450RawRep2 AG04450 Sg 2 bigWig 1.000000 43642.000000 AG04450 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 90 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04450 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel AG04450 Sg 2\ subGroups view=zRSig cellType=t3AG04450 rep=rep2 treatment=None\ track wgEncodeUwDnaseAg04450RawRep2\ type bigWig 1.000000 43642.000000\ wgEncodeUwTfbsAoafCtcfStdRawRep1 AoAF CTCF Sg 1 bigWig 1.000000 4397.000000 AoAF CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 90 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AoAF CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AoAF CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3AOAF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAoafCtcfStdRawRep1\ type bigWig 1.000000 4397.000000\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_ctss_rev AorticSmsToIL1b_04hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_reverse 0 90 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep2%20%28LK53%29.CNhs13376.12757-136B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12757-136B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_tpm_rev AorticSmsToIL1b_04hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_reverse 1 90 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep2%20%28LK53%29.CNhs13376.12757-136B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12757-136B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3\ urlLabel FANTOM5 Details:\ wgEncodeUwRepliSeqBg02esSumSignalRep1 BG02ES Sd 1 bigWig 2.000000 2088.000000 BG02ES Repli-seq Summed Densities Rep 1 from ENCODE/UW 0 90 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BG02ES Repli-seq Summed Densities Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewSumSignal off\ shortLabel BG02ES Sd 1\ subGroups view=v5SumSignal cellType=t3BG02ES phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqBg02esSumSignalRep1\ type bigWig 2.000000 2088.000000\ wgEncodeOpenChromDnaseCllBaseOverlapSignal CLL OS bigWig 0.000000 302.000000 CLL DNaseI HS Overlap Signal from ENCODE/Duke 2 90 0 0 0 127 127 127 1 0 0 regulation 0 longLabel CLL DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel CLL OS\ subGroups view=SIGBO cellType=t3CLL treatment=zNONE\ track wgEncodeOpenChromDnaseCllBaseOverlapSignal\ type bigWig 0.000000 302.000000\ encTfChipPkENCFF809PXE GM12878 BMI1 narrowPeak Transcription Factor ChIP-seq Peaks of BMI1 in GM12878 from ENCODE 3 (ENCFF809PXE) 1 90 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of BMI1 in GM12878 from ENCODE 3 (ENCFF809PXE)\ parent encTfChipPk off\ shortLabel GM12878 BMI1\ subGroups cellType=GM12878 factor=BMI1\ track encTfChipPkENCFF809PXE\ wgEncodeAwgTfbsSydhGm12878Zzz3UniPk GM12878 ZZZ3 narrowPeak GM12878 TFBS Uniform Peaks of ZZZ3 from ENCODE/Harvard/Analysis 1 90 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TFBS Uniform Peaks of ZZZ3 from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12878 ZZZ3\ subGroups tier=a10 cellType=a10GM12878 factor=ZZZ3 lab=Harvard\ track wgEncodeAwgTfbsSydhGm12878Zzz3UniPk\ wgEncodeHaibTfbsGm12878NrsfPcr2xRawRep2 GM78 NRSF PCR2 2 bigWig 0.206820 181.897995 GM12878 NRSF PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 90 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 NRSF PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 NRSF PCR2 2\ subGroups view=RawSignal factor=NRSF cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878NrsfPcr2xRawRep2\ type bigWig 0.206820 181.897995\ wgEncodeSydhTfbsGm12878Tr4StdSig GM78 TR4 Std bigWig 0.000000 8489.599609 GM12878 TR4 Standard ChIP-seq Signal from ENCODE/SYDH 2 90 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 TR4 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 TR4 Std\ subGroups view=Signal factor=TR4 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Tr4StdSig\ type bigWig 0.000000 8489.599609\ wgEncodeCshlLongRnaSeqH1hescNucleusPapJunctions H1hSC nuc pA+ J bed 6 + H1-hESC nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 90 0 107 27 127 181 141 0 0 0 expression 1 color 0,107,27\ longLabel H1-hESC nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel H1hSC nuc pA+ J\ subGroups view=Junctions cellType=t1H1HESC localization=NUCLEUS rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqH1hescNucleusPapJunctions\ type bed 6 +\ wgEncodeDukeAffyExonHek293tSimpleSignalRep2 HEK293T 2 bigBed 6 + HEK293T Exon array Signal Rep 2 from ENCODE/Duke 0 90 0 0 0 127 127 127 1 0 0 expression 1 longLabel HEK293T Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HEK293T 2\ subGroups cellType=t3HEK293T treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonHek293tSimpleSignalRep2\ type bigBed 6 +\ wgEncodeUwHistoneHepg2H3k36me3StdRawRep1 HepG H3K36M3 Sg 1 bigWig 1.000000 3834.000000 HepG2 H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 90 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HepG H3K36M3 Sg 1\ subGroups view=zRSig factor=H3K36ME3 cellType=t2HEPG2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k36me3StdRawRep1\ type bigWig 1.000000 3834.000000\ wgEncodeUwDgfHgfPk HGF Pk narrowPeak HGF DNaseI DGF Peaks from ENCODE/UW 0 90 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HGF DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HGF Pk\ subGroups view=Peaks cellType=t3HGF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHgfPk\ type narrowPeak\ wgEncodeUwAffyExonArrayHmfSimpleSignalRep2 HMF 2 broadPeak HMF Exon array Signal Rep 2 from ENCODE/UW 0 90 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMF Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMF 2\ subGroups cellType=t3HMF rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHmfSimpleSignalRep2\ type broadPeak\ wgEncodeHaibMethylRrbsHrceUwSitesRep2 HRCEpiC 2 bed 9 + HRCEpiC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 90 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRCEpiC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HRCEpiC 2\ subGroups cellType=t3HRCEPIC obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHrceUwSitesRep2\ type bed 9 +\ wgEncodeCaltechRnaSeqHuvecR1x75dAlignsRep2V2 HUVEC 1x75D A 2 bam HUVEC single read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 90 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC single read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel HUVEC 1x75D A 2\ subGroups view=Aligns cellType=t2HUVEC insertLength=ilNa readType=r1x75D rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHuvecR1x75dAlignsRep2V2\ type bam\ wgEncodeGisRnaPetImr90CellPapPlusRawRep2 IMR9 cell pA+ + 2 bigWig 1.000000 1807720.000000 IMR90 whole cell polyA+ clone-free RNA PET Plus signal Rep 2 from ENCODE/GIS 2 90 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell polyA+ clone-free RNA PET Plus signal Rep 2 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel IMR9 cell pA+ + 2\ subGroups view=v2PlusRawSignal cellType=bIMR90 cloned=Free localization=cell rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeGisRnaPetImr90CellPapPlusRawRep2\ type bigWig 1.000000 1807720.000000\ wgEncodeBroadHistoneK562Chd1a301218aStdSig K562 CHD1 bigWig 0.040000 36551.800781 K562 CHD1 (A301-218A) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 90 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 CHD1 (A301-218A) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 CHD1\ subGroups view=Signal factor=CHD1A301218A cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Chd1a301218aStdSig\ type bigWig 0.040000 36551.800781\ wgEncodeRikenCageK562PolysomePamAln K562 psom pA- A 1 bam K562 polysome polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN 0 90 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 polysome polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel K562 psom pA- A 1\ subGroups view=Alignments cellType=t1K562 localization=polysome rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageK562PolysomePamAln\ type bam\ wgEncodeAwgDnaseDukeLncapandrogenUniPk LNCaP(Andr) DNase narrowPeak LNCaP (Androgen) DNaseI HS Uniform Peaks from ENCODE/Analysis 1 90 0 0 0 127 127 127 1 0 0 regulation 1 longLabel LNCaP (Androgen) DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel LNCaP(Andr) DNase\ subGroups tier=a30 cellType=LNCaP-Andr\ track wgEncodeAwgDnaseDukeLncapandrogenUniPk\ pgNA19026indel LWK NA19026 indel pgSnp LWK NA19026 indel (Complete Genomics) 0 90 0 0 0 127 127 127 0 0 0 varRep 1 longLabel LWK NA19026 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel LWK NA19026 indel\ subGroups view=C_CG id=CF_div_GS19026 type=Indel\ track pgNA19026indel\ wgEncodeOpenChromChipMcf7CtcfSerumstimBaseOverlapSignal MCF-7 CTCF stm OS bigWig 0.000000 5538.000000 MCF-7 serum stim CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 90 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 serum stim CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel MCF-7 CTCF stm OS\ subGroups view=SIGBO factor=CTCF cellType=t2MCF7 treatment=SERUMSTIM\ track wgEncodeOpenChromChipMcf7CtcfSerumstimBaseOverlapSignal\ type bigWig 0.000000 5538.000000\ wgEncodeOpenChromFaireNhbeBaseOverlapSignal NHBE FAIRE OS bigWig 0.000000 1478.000000 NHBE FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 90 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHBE FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel NHBE FAIRE OS\ subGroups view=SIGBO cellType=t3NHBE treatment=AANONE\ track wgEncodeOpenChromFaireNhbeBaseOverlapSignal\ type bigWig 0.000000 1478.000000\ wgEncodeCshlShortRnaSeqA549CytosolShorttotalMinusRep4 A549 cyto - 2 bigWig 1.000000 17388524.000000 A549 cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 91 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel A549 cyto - 2\ subGroups view=MinusSignal cellType=t2A549 localization=CYTOSOL protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqA549CytosolShorttotalMinusRep4\ type bigWig 1.000000 17388524.000000\ wgEncodeUwDnaseAg09309HotspotsRep1 AG09309 Ht 1 broadPeak AG09309 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 91 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09309 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel AG09309 Ht 1\ subGroups view=Hot cellType=t3AG09309 rep=rep1 treatment=None\ track wgEncodeUwDnaseAg09309HotspotsRep1\ type broadPeak\ wgEncodeUwTfbsAoafCtcfStdHotspotsRep2 AoAF CTCF Ht 2 broadPeak AoAF CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 91 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoAF CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel AoAF CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3AOAF rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAoafCtcfStdHotspotsRep2\ type broadPeak\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_ctss_fwd AorticSmsToIL1b_04hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_forward 0 91 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep3%20%28LK54%29.CNhs13584.12855-137D2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12855-137D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_tpm_fwd AorticSmsToIL1b_04hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_forward 1 91 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep3%20%28LK54%29.CNhs13584.12855-137D2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12855-137D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2\ urlLabel FANTOM5 Details:\ wgEncodeUwRepliSeqBjG1bPctSignalRep1 BJ G1b 1 bigWig 1.000000 100.000000 BJ G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 91 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BJ G1b 1\ subGroups view=v1PctSignal cellType=t3BJ phase=p1G1B rep=rep1\ track wgEncodeUwRepliSeqBjG1bPctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseColo829Pk Colo829 Pk narrowPeak Colo829 DNaseI HS Peaks from ENCODE/Duke 3 91 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Colo829 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Colo829 Pk\ subGroups view=Peaks cellType=t3COLO829 treatment=zNONE\ track wgEncodeOpenChromDnaseColo829Pk\ type narrowPeak\ encTfChipPkENCFF082JDH GM12878 BRCA1 narrowPeak Transcription Factor ChIP-seq Peaks of BRCA1 in GM12878 from ENCODE 3 (ENCFF082JDH) 1 91 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of BRCA1 in GM12878 from ENCODE 3 (ENCFF082JDH)\ parent encTfChipPk off\ shortLabel GM12878 BRCA1\ subGroups cellType=GM12878 factor=BRCA1\ track encTfChipPkENCFF082JDH\ wgEncodeHaibTfbsGm12878P300Pcr1xPkRep1 GM78 p300 PCR1 1 broadPeak GM12878 p300 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 91 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 p300 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 p300 PCR1 1\ subGroups view=Peaks factor=P300 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878P300Pcr1xPkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878Usf2IggmusPk GM78 USF2 IgM narrowPeak GM12878 USF2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 91 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 USF2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 USF2 IgM\ subGroups view=Peaks factor=USF2 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Usf2IggmusPk\ type narrowPeak\ wgEncodeAwgTfbsHaibH1hescAtf2sc81188V0422111UniPk H1-hESC ATF2 narrowPeak H1-hESC TFBS Uniform Peaks of ATF2_(SC-81188) from ENCODE/HudsonAlpha/Analysis 1 91 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of ATF2_(SC-81188) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC ATF2\ subGroups tier=a10 cellType=a10H1HESC factor=ATF2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescAtf2sc81188V0422111UniPk\ wgEncodeCshlLongRnaSeqH1hescNucleusPapMinusRawSigRep2 H1hSC nuc pA+ - 2 bigWig 1.000000 178195.000000 H1-hESC nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 91 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel H1hSC nuc pA+ - 2\ subGroups view=MinusSignal cellType=t1H1HESC localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescNucleusPapMinusRawSigRep2\ type bigWig 1.000000 178195.000000\ wgEncodeDukeAffyExonHepatoSimpleSignalRep1V2 Hepatocytes 1 bigBed 6 + Hepatocytes Exon array Signal Rep 1 from ENCODE/Duke 0 91 0 0 0 127 127 127 1 0 0 expression 1 longLabel Hepatocytes Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Hepatocytes 1\ subGroups cellType=t3HEPATOCYTES treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonHepatoSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeUwHistoneHepg2H3k36me3StdHotspotsRep2 HepG H3K36M3 Ht 2 broadPeak HepG2 H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 91 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HepG H3K36M3 Ht 2\ subGroups view=Hot factor=H3K36ME3 cellType=t2HEPG2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k36me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDgfHgfSig HGF Sig bigWig 1.000000 63610.000000 HGF DNaseI DGF Per-base Signal from ENCODE/UW 2 91 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HGF DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HGF Sig\ subGroups view=Signal cellType=t3HGF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHgfSig\ type bigWig 1.000000 63610.000000\ wgEncodeUwAffyExonArrayHmvecdadSimpleSignalRep1 HMVEC-dAd 1 broadPeak HMVEC-dAd Exon-array Signal Rep 1 from ENCODE/UW 0 91 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMVEC-dAd Exon-array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMVEC-dAd 1\ subGroups cellType=t3HMVECDAD rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHmvecdadSimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethylRrbsHreUwSitesRep1 HRE 1 bed 9 + HRE Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 91 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HRE 1\ subGroups cellType=t3HRE obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHreUwSitesRep1\ type bed 9 +\ wgEncodeCaltechRnaSeqHuvecR1x75dTh1014UMinusRawRep1V4 HUVEC 1x75D - 1 bigWig -132924.000000 -0.025000 HUVEC single read RNA-seq Minus Signal Rep 1 from ENCODE/Caltech 2 91 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC single read RNA-seq Minus Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewMinusSignal off\ shortLabel HUVEC 1x75D - 1\ subGroups view=MinusSignal cellType=t2HUVEC readType=r1x75D insertLength=ilNa rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHuvecR1x75dTh1014UMinusRawRep1V4\ type bigWig -132924.000000 -0.025000\ wgEncodeGisRnaPetImr90CellPapAlnRep1 IMR9 cell pA+ A 1 bam IMR90 whole cell polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS 0 91 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 whole cell polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel IMR9 cell pA+ A 1\ subGroups view=v3Alignments cellType=bIMR90 cloned=Free localization=cell rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetImr90CellPapAlnRep1\ type bam\ wgEncodeRikenCageK562CellPapTssHmm K562 cell pA+ bed 6 K562 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 91 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm on\ shortLabel K562 cell pA+\ subGroups view=TssHmm cellType=t1K562 localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageK562CellPapTssHmm\ type bed 6\ wgEncodeBroadHistoneK562Chd4mi2Pk K562 CHD4 Mi2 broadPeak K562 CHD4 Mi2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 91 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 CHD4 Mi2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 CHD4 Mi2\ subGroups view=Peaks factor=CHD4MI2 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Chd4mi2Pk\ type broadPeak\ wgEncodeOpenChromChipMcf7CtcfVehPkRep1 MCF-7 veh CTCF Pk narrowPeak MCF-7 vehicle CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 91 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 vehicle CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel MCF-7 veh CTCF Pk\ subGroups treatment=VEH view=Peaks factor=CTCF cellType=t2MCF7\ track wgEncodeOpenChromChipMcf7CtcfVehPkRep1\ type narrowPeak\ wgEncodeAwgDnaseDukeMcf7hypoxiaUniPk MCF7(Hypox) DNase narrowPeak MCF-7 (Hypoxia) DNaseI HS Uniform Peaks from ENCODE/Analysis 1 91 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 (Hypoxia) DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel MCF7(Hypox) DNase\ subGroups tier=a30 cellType=MCF-7-Hypox\ track wgEncodeAwgDnaseDukeMcf7hypoxiaUniPk\ pgNA19648 MXL NA19648 pgSnp MXL NA19648 (Complete Genomics) 0 91 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MXL NA19648 (Complete Genomics)\ parent pgSnpCg\ shortLabel MXL NA19648\ subGroups view=C_CG id=CG_div_GS19648 type=SNP\ track pgNA19648\ wgEncodeOpenChromFaireNhekPk NHEK FAIRE Pk narrowPeak NHEK FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 91 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel NHEK FAIRE Pk\ subGroups view=Peaks cellType=t3NHEK treatment=AANONE\ track wgEncodeOpenChromFaireNhekPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqA549CytosolShorttotalPlusRep3 A549 cyto + 1 bigWig 1.000000 8900805.000000 A549 cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 92 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 cyto + 1\ subGroups view=PlusSignal cellType=t2A549 localization=CYTOSOL protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqA549CytosolShorttotalPlusRep3\ type bigWig 1.000000 8900805.000000\ wgEncodeUwDnaseAg09309PkRep1 AG09309 Pk 1 narrowPeak AG09309 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 92 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09309 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel AG09309 Pk 1\ subGroups view=Peaks cellType=t3AG09309 rep=rep1 treatment=None\ track wgEncodeUwDnaseAg09309PkRep1\ type narrowPeak\ wgEncodeUwTfbsAoafCtcfStdPkRep2 AoAF CTCF Pk 2 narrowPeak AoAF CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 92 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoAF CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel AoAF CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3AOAF rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAoafCtcfStdPkRep2\ type narrowPeak\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_ctss_rev AorticSmsToIL1b_04hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_reverse 0 92 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep3%20%28LK54%29.CNhs13584.12855-137D2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12855-137D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_tpm_rev AorticSmsToIL1b_04hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_reverse 1 92 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep3%20%28LK54%29.CNhs13584.12855-137D2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12855-137D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2\ urlLabel FANTOM5 Details:\ wgEncodeUwRepliSeqBjS1PctSignalRep1 BJ S1 1 bigWig 1.000000 100.000000 BJ S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 92 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BJ S1 1\ subGroups view=v1PctSignal cellType=t3BJ phase=p2S1 rep=rep1\ track wgEncodeUwRepliSeqBjS1PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseColo829Sig Colo829 DS bigWig 0.000000 0.945300 Colo829 DNaseI HS Density Signal from ENCODE/Duke 2 92 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Colo829 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Colo829 DS\ subGroups view=SIG cellType=t3COLO829 treatment=zNONE\ track wgEncodeOpenChromDnaseColo829Sig\ type bigWig 0.000000 0.945300\ encTfChipPkENCFF788LSH GM12878 CBFB narrowPeak Transcription Factor ChIP-seq Peaks of CBFB in GM12878 from ENCODE 3 (ENCFF788LSH) 1 92 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of CBFB in GM12878 from ENCODE 3 (ENCFF788LSH)\ parent encTfChipPk off\ shortLabel GM12878 CBFB\ subGroups cellType=GM12878 factor=CBFB\ track encTfChipPkENCFF788LSH\ wgEncodeHaibTfbsGm12878P300Pcr1xRawRep1 GM78 p300 PCR1 1 bigWig 0.110460 174.112000 GM12878 p300 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 92 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 p300 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 p300 PCR1 1\ subGroups view=RawSignal factor=P300 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878P300Pcr1xRawRep1\ type bigWig 0.110460 174.112000\ wgEncodeSydhTfbsGm12878Usf2IggmusSig GM78 USF2 IgM bigWig 1.000000 8996.000000 GM12878 USF2 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 92 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 USF2 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 USF2 IgM\ subGroups view=Signal factor=USF2 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Usf2IggmusSig\ type bigWig 1.000000 8996.000000\ wgEncodeAwgTfbsHaibH1hescAtf3V0416102UniPk H1-hESC ATF3 narrowPeak H1-hESC TFBS Uniform Peaks of ATF3 from ENCODE/HudsonAlpha/Analysis 1 92 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of ATF3 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC ATF3\ subGroups tier=a10 cellType=a10H1HESC factor=ATF3 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescAtf3V0416102UniPk\ wgEncodeCshlLongRnaSeqH1hescNucleusPapPlusRawSigRep2 H1hSC nuc pA+ + 2 bigWig 1.000000 498253.000000 H1-hESC nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 92 0 107 27 127 181 141 0 0 0 expression 0 color 0,107,27\ longLabel H1-hESC nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel H1hSC nuc pA+ + 2\ subGroups view=PlusSignal cellType=t1H1HESC localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqH1hescNucleusPapPlusRawSigRep2\ type bigWig 1.000000 498253.000000\ wgEncodeDukeAffyExonHepatoSimpleSignalRep2V2 Hepatocytes 2 bigBed 6 + Hepatocytes Exon array Signal Rep 2 from ENCODE/Duke 0 92 0 0 0 127 127 127 1 0 0 expression 1 longLabel Hepatocytes Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Hepatocytes 2\ subGroups cellType=t3HEPATOCYTES treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonHepatoSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeUwHistoneHepg2H3k36me3StdPkRep2 HepG H3K36M3 Pk 2 narrowPeak HepG2 H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 92 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HepG H3K36M3 Pk 2\ subGroups view=Peaks factor=H3K36ME3 cellType=t2HEPG2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k36me3StdPkRep2\ type narrowPeak\ wgEncodeUwDgfHgfRaw HGF Raw bigWig 1.000000 302143.000000 HGF DNaseI DGF Raw Signal from ENCODE/UW 0 92 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HGF DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HGF Raw\ subGroups view=zRaw cellType=t3HGF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHgfRaw\ type bigWig 1.000000 302143.000000\ wgEncodeUwAffyExonArrayHmvecdadSimpleSignalRep2 HMVEC-dAd 2 broadPeak HMVEC-dAd Exon-array Signal Rep 2 from ENCODE/UW 0 92 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMVEC-dAd Exon-array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMVEC-dAd 2\ subGroups cellType=t3HMVECDAD rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHmvecdadSimpleSignalRep2\ type broadPeak\ wgEncodeHaibMethylRrbsHreUwSitesRep2 HRE 2 bed 9 + HRE Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 92 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HRE 2\ subGroups cellType=t3HRE obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHreUwSitesRep2\ type bed 9 +\ wgEncodeCaltechRnaSeqHuvecR1x75dTh1014UMinusRawRep2V4 HUVEC 1x75D - 2 bigWig -37542.500000 -0.025000 HUVEC single read RNA-seq Minus Signal Rep 2 from ENCODE/Caltech 2 92 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC single read RNA-seq Minus Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewMinusSignal off\ shortLabel HUVEC 1x75D - 2\ subGroups view=MinusSignal cellType=t2HUVEC readType=r1x75D insertLength=ilNa rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHuvecR1x75dTh1014UMinusRawRep2V4\ type bigWig -37542.500000 -0.025000\ wgEncodeGisRnaPetImr90CellPapAlnRep2 IMR9 cell pA+ A 2 bam IMR90 whole cell polyA+ clone-free RNA PET Alignments Rep 2 from ENCODE/GIS 0 92 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 whole cell polyA+ clone-free RNA PET Alignments Rep 2 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel IMR9 cell pA+ A 2\ subGroups view=v3Alignments cellType=bIMR90 cloned=Free localization=cell rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeGisRnaPetImr90CellPapAlnRep2\ type bam\ wgEncodeRikenCageK562CellPapPlusSignalRep1 K562 cell pA+ + 1 bigWig 0.050000 12831.000000 K562 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 92 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal on\ shortLabel K562 cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t1K562 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageK562CellPapPlusSignalRep1\ type bigWig 0.050000 12831.000000\ wgEncodeBroadHistoneK562Chd4mi2Sig K562 CHD4 Mi2 bigWig 0.040000 347.640015 K562 CHD4 Mi2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 92 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 CHD4 Mi2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 CHD4 Mi2\ subGroups view=Signal factor=CHD4MI2 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Chd4mi2Sig\ type bigWig 0.040000 347.640015\ wgEncodeOpenChromChipMcf7CtcfVehSig MCF-7 veh CTCF DS bigWig 0.000000 6.029000 MCF-7 vehicle CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 92 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 vehicle CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel MCF-7 veh CTCF DS\ subGroups treatment=VEH view=SIG factor=CTCF cellType=t2MCF7\ track wgEncodeOpenChromChipMcf7CtcfVehSig\ type bigWig 0.000000 6.029000\ wgEncodeAwgDnaseDukeMedulloUniPk Medullo DNase narrowPeak Medullo DNaseI HS Uniform Peaks from ENCODE/Analysis 1 92 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Medullo DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Medullo DNase\ subGroups tier=a30 cellType=Medullo\ track wgEncodeAwgDnaseDukeMedulloUniPk\ pgNA19648indel MXL NA19648 indel pgSnp MXL NA19648 indel (Complete Genomics) 0 92 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MXL NA19648 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel MXL NA19648 indel\ subGroups view=C_CG id=CG_div_GS19648 type=Indel\ track pgNA19648indel\ wgEncodeOpenChromFaireNhekSig NHEK FAIRE DS bigWig 0.000000 0.643100 NHEK FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 92 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel NHEK FAIRE DS\ subGroups view=SIG cellType=t3NHEK treatment=AANONE\ track wgEncodeOpenChromFaireNhekSig\ type bigWig 0.000000 0.643100\ wgEncodeCshlShortRnaSeqA549CytosolShorttotalPlusRep4 A549 cyto + 2 bigWig 1.000000 9212263.000000 A549 cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 93 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 cyto + 2\ subGroups view=PlusSignal cellType=t2A549 localization=CYTOSOL protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqA549CytosolShorttotalPlusRep4\ type bigWig 1.000000 9212263.000000\ wgEncodeUwDnaseAg09309RawRep1 AG09309 Sg 1 bigWig 1.000000 55288.000000 AG09309 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 93 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG09309 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel AG09309 Sg 1\ subGroups view=zRSig cellType=t3AG09309 rep=rep1 treatment=None\ track wgEncodeUwDnaseAg09309RawRep1\ type bigWig 1.000000 55288.000000\ wgEncodeUwTfbsAoafCtcfStdRawRep2 AoAF CTCF Sg 2 bigWig 1.000000 18876.000000 AoAF CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 93 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AoAF CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AoAF CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3AOAF rep=rep2 treatment=aNone\ track wgEncodeUwTfbsAoafCtcfStdRawRep2\ type bigWig 1.000000 18876.000000\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_ctss_fwd AorticSmsToIL1b_05hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_forward 0 93 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep1%20%28LK55%29.CNhs13356.12660-134I5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12660-134I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_tpm_fwd AorticSmsToIL1b_05hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_forward 1 93 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep1%20%28LK55%29.CNhs13356.12660-134I5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12660-134I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5\ urlLabel FANTOM5 Details:\ wgEncodeUwRepliSeqBjS2PctSignalRep1 BJ S2 1 bigWig 1.000000 100.000000 BJ S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 93 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BJ S2 1\ subGroups view=v1PctSignal cellType=t3BJ phase=p3S2 rep=rep1\ track wgEncodeUwRepliSeqBjS2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseColo829BaseOverlapSignal Colo829 OS bigWig 0.000000 198.000000 Colo829 DNaseI HS Overlap Signal from ENCODE/Duke 2 93 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Colo829 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Colo829 OS\ subGroups view=SIGBO cellType=t3COLO829 treatment=zNONE\ track wgEncodeOpenChromDnaseColo829BaseOverlapSignal\ type bigWig 0.000000 198.000000\ encTfChipPkENCFF141LEI GM12878 CBX3 narrowPeak Transcription Factor ChIP-seq Peaks of CBX3 in GM12878 from ENCODE 3 (ENCFF141LEI) 1 93 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of CBX3 in GM12878 from ENCODE 3 (ENCFF141LEI)\ parent encTfChipPk off\ shortLabel GM12878 CBX3\ subGroups cellType=GM12878 factor=CBX3\ track encTfChipPkENCFF141LEI\ wgEncodeHaibTfbsGm12878P300Pcr1xPkRep2 GM78 p300 PCR1 2 broadPeak GM12878 p300 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 93 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 p300 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 p300 PCR1 2\ subGroups view=Peaks factor=P300 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878P300Pcr1xPkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12878WhipIggmusPk GM78 WHIP IgM narrowPeak GM12878 WHIP IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 93 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 WHIP IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 WHIP IgM\ subGroups view=Peaks factor=WHIP cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878WhipIggmusPk\ type narrowPeak\ wgEncodeAwgTfbsSydhH1hescBach1sc14700IggrabUniPk H1-hESC BACH1 narrowPeak H1-hESC TFBS Uniform Peaks of Bach1_(sc-14700) from ENCODE/Stanford/Analysis 1 93 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of Bach1_(sc-14700) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC BACH1\ subGroups tier=a10 cellType=a10H1HESC factor=BACH1 lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescBach1sc14700IggrabUniPk\ wgEncodeUwHistoneHepg2H3k36me3StdRawRep2 HepG H3K36M3 Sg 2 bigWig 1.000000 4879.000000 HepG2 H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 93 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HepG H3K36M3 Sg 2\ subGroups view=zRSig factor=H3K36ME3 cellType=t2HEPG2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHepg2H3k36me3StdRawRep2\ type bigWig 1.000000 4879.000000\ wgEncodeUwDgfHipeHotspots HIPEpiC Hot broadPeak HIPEpiC DNaseI DGF Hotspots from ENCODE/UW 0 93 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HIPEpiC DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HIPEpiC Hot\ subGroups view=Hotspots cellType=t3HIPEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHipeHotspots\ type broadPeak\ wgEncodeDukeAffyExonHmecSimpleSignalRep1V2 HMEC 1 bigBed 6 + HMEC Exon array Signal Rep 1 from ENCODE/Duke 0 93 0 0 0 127 127 127 1 0 0 expression 1 longLabel HMEC Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HMEC 1\ subGroups cellType=t3HMEC treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonHmecSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeUwAffyExonArrayHmvecdbladSimpleSignalRep1 HMVEC-dBl-Ad 1 broadPeak HMVEC-dBl-Ad Exon array Signal Rep 1 from ENCODE/UW 0 93 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMVEC-dBl-Ad Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMVEC-dBl-Ad 1\ subGroups cellType=t3HMVECDBLAD rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHmvecdbladSimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethylRrbsHrpeUwSitesRep1 HRPEpiC 1 bed 9 + HRPEpiC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 93 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRPEpiC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HRPEpiC 1\ subGroups cellType=t3HRPEPIC obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHrpeUwSitesRep1\ type bed 9 +\ wgEncodeCaltechRnaSeqHuvecR1x75dTh1014UPlusRawRep1V4 HUVEC 1x75D + 1 bigWig 0.025000 83835.000000 HUVEC single read RNA-seq Plus Signal Rep 1 from ENCODE/Caltech 2 93 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC single read RNA-seq Plus Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewPlusSignal off\ shortLabel HUVEC 1x75D + 1\ subGroups view=PlusSignal cellType=t2HUVEC readType=r1x75D insertLength=ilNa rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHuvecR1x75dTh1014UPlusRawRep1V4\ type bigWig 0.025000 83835.000000\ wgEncodeGisRnaPetImr90CytosolPapClusters IMR9 cyto pA+ bed 6 + IMR90 cytosol polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS 2 93 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 cytosol polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel IMR9 cyto pA+\ subGroups view=v1Clusters rep=rep1 rank=none cellType=bIMR90 cloned=Free localization=cytosol rnaExtract=PAP\ track wgEncodeGisRnaPetImr90CytosolPapClusters\ type bed 6 +\ wgEncodeCshlLongRnaSeqK562CellLongnonpolyaAlnRep1 K562 cel pA- A 1 bam K562 whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 93 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel K562 cel pA- A 1\ subGroups view=Alignments cellType=t1K562 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562CellLongnonpolyaAlnRep1\ type bam\ wgEncodeRikenCageK562CellPapPlusSignalRep2 K562 cell pA+ + 2 bigWig 0.040000 12450.700195 K562 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 93 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel K562 cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t1K562 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageK562CellPapPlusSignalRep2\ type bigWig 0.040000 12450.700195\ wgEncodeBroadHistoneK562Chd7a301223a1Pk K562 CHD7 broadPeak K562 CHD7 (A301-223A-1) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 93 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 CHD7 (A301-223A-1) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 CHD7\ subGroups view=Peaks factor=CHD7A301223A1 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Chd7a301223a1Pk\ type broadPeak\ wgEncodeOpenChromChipMcf7CtcfVehBaseOverlapSignal MCF-7 veh CTCF OS bigWig 0.000000 5010.000000 MCF-7 vehicle CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 93 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 vehicle CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel MCF-7 veh CTCF OS\ subGroups treatment=VEH view=SIGBO factor=CTCF cellType=t2MCF7\ track wgEncodeOpenChromChipMcf7CtcfVehBaseOverlapSignal\ type bigWig 0.000000 5010.000000\ wgEncodeAwgDnaseDukeMelanoUniPk Melano DNase narrowPeak Melano DNaseI HS Uniform Peaks from ENCODE/Analysis 1 93 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Melano DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Melano DNase\ subGroups tier=a30 cellType=Melano\ track wgEncodeAwgDnaseDukeMelanoUniPk\ pgNA19649 MXL NA19649 pgSnp MXL NA19649 (Complete Genomics) 0 93 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MXL NA19649 (Complete Genomics)\ parent pgSnpCg\ shortLabel MXL NA19649\ subGroups view=C_CG id=CG_div_GS19649 type=SNP\ track pgNA19649\ wgEncodeOpenChromFaireNhekBaseOverlapSignal NHEK FAIRE OS bigWig 0.000000 3137.000000 NHEK FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 93 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel NHEK FAIRE OS\ subGroups view=SIGBO cellType=t3NHEK treatment=AANONE\ track wgEncodeOpenChromFaireNhekBaseOverlapSignal\ type bigWig 0.000000 3137.000000\ wgEncodeCshlShortRnaSeqA549CytosolTapContigs A549 cyto TAP C bed 6 A549 TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL 2 94 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel A549 cyto TAP C\ subGroups view=Contigs cellType=t2A549 localization=CYTOSOL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqA549CytosolTapContigs\ type bed 6\ wgEncodeUwDnaseAg09309HotspotsRep2 AG09309 Ht 2 broadPeak AG09309 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 94 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09309 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel AG09309 Ht 2\ subGroups view=Hot cellType=t3AG09309 rep=rep2 treatment=None\ track wgEncodeUwDnaseAg09309HotspotsRep2\ type broadPeak\ wgEncodeUwTfbsAoafInputStdRawRep1 AoAF In Sg 1 bigWig 1.000000 17667.000000 AoAF Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 94 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AoAF Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel AoAF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3AOAF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsAoafInputStdRawRep1\ type bigWig 1.000000 17667.000000\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_ctss_rev AorticSmsToIL1b_05hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_reverse 0 94 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep1%20%28LK55%29.CNhs13356.12660-134I5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12660-134I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_tpm_rev AorticSmsToIL1b_05hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_reverse 1 94 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep1%20%28LK55%29.CNhs13356.12660-134I5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12660-134I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5\ urlLabel FANTOM5 Details:\ wgEncodeUwRepliSeqBjS3PctSignalRep1 BJ S3 1 bigWig 1.000000 100.000000 BJ S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 94 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BJ S3 1\ subGroups view=v1PctSignal cellType=t3BJ phase=p4S3 rep=rep1\ track wgEncodeUwRepliSeqBjS3PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseEcc1Dm002p1hPk ECC-1 DMSO Pk narrowPeak ECC-1 DMSO 0.02% DNaseI HS Peaks from ENCODE/Duke 3 94 0 0 0 127 127 127 1 0 0 regulation 1 longLabel ECC-1 DMSO 0.02% DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel ECC-1 DMSO Pk\ subGroups view=Peaks cellType=t3ECC1 treatment=DM002P1H\ track wgEncodeOpenChromDnaseEcc1Dm002p1hPk\ type narrowPeak\ encTfChipPkENCFF420YHY GM12878 CBX5 narrowPeak Transcription Factor ChIP-seq Peaks of CBX5 in GM12878 from ENCODE 3 (ENCFF420YHY) 1 94 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of CBX5 in GM12878 from ENCODE 3 (ENCFF420YHY)\ parent encTfChipPk off\ shortLabel GM12878 CBX5\ subGroups cellType=GM12878 factor=CBX5\ track encTfChipPkENCFF420YHY\ wgEncodeHaibTfbsGm12878P300Pcr1xRawRep2 GM78 p300 PCR1 2 bigWig 0.185099 173.298996 GM12878 p300 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 94 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 p300 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 p300 PCR1 2\ subGroups view=RawSignal factor=P300 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878P300Pcr1xRawRep2\ type bigWig 0.185099 173.298996\ wgEncodeSydhTfbsGm12878WhipIggmusSig GM78 WHIP IgM bigWig 0.000000 6583.799805 GM12878 WHIP IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 94 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 WHIP IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 WHIP IgM\ subGroups view=Signal factor=WHIP cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878WhipIggmusSig\ type bigWig 0.000000 6583.799805\ wgEncodeAwgTfbsHaibH1hescBcl11aPcr1xUniPk H1-hESC BCL11A narrowPeak H1-hESC TFBS Uniform Peaks of BCL11A from ENCODE/HudsonAlpha/Analysis 1 94 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of BCL11A from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC BCL11A\ subGroups tier=a10 cellType=a10H1HESC factor=BCL11A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescBcl11aPcr1xUniPk\ wgEncodeUwHistoneHepg2InputStdRawRep1 HepG In Sg 1 bigWig 1.000000 7679.000000 HepG2 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 94 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HepG In Sg 1\ subGroups view=zRSig factor=zInput cellType=t2HEPG2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHepg2InputStdRawRep1\ type bigWig 1.000000 7679.000000\ wgEncodeUwDgfHipePk HIPEpiC Pk narrowPeak HIPEpiC DNaseI DGF Peaks from ENCODE/UW 0 94 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HIPEpiC DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HIPEpiC Pk\ subGroups view=Peaks cellType=t3HIPEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHipePk\ type narrowPeak\ wgEncodeDukeAffyExonHmecSimpleSignalRep2V2 HMEC 2 bigBed 6 + HMEC Exon array Signal Rep 2 from ENCODE/Duke 0 94 0 0 0 127 127 127 1 0 0 expression 1 longLabel HMEC Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HMEC 2\ subGroups cellType=t3HMEC treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonHmecSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeUwAffyExonArrayHmvecdbladSimpleSignalRep2 HMVEC-dBl-Ad 2 broadPeak HMVEC-dBl-Ad Exon array Signal Rep 2 from ENCODE/UW 0 94 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMVEC-dBl-Ad Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMVEC-dBl-Ad 2\ subGroups cellType=t3HMVECDBLAD rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHmvecdbladSimpleSignalRep2\ type broadPeak\ wgEncodeHaibMethylRrbsHrpeUwSitesRep2 HRPEpiC 2 bed 9 + HRPEpiC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 94 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRPEpiC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HRPEpiC 2\ subGroups cellType=t3HRPEPIC obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHrpeUwSitesRep2\ type bed 9 +\ wgEncodeCaltechRnaSeqHuvecR1x75dTh1014UPlusRawRep2V4 HUVEC 1x75D + 2 bigWig 0.025000 32384.500000 HUVEC single read RNA-seq Plus Signal Rep 2 from ENCODE/Caltech 2 94 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC single read RNA-seq Plus Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewPlusSignal off\ shortLabel HUVEC 1x75D + 2\ subGroups view=PlusSignal cellType=t2HUVEC readType=r1x75D insertLength=ilNa rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHuvecR1x75dTh1014UPlusRawRep2V4\ type bigWig 0.025000 32384.500000\ wgEncodeGisRnaPetImr90CytosolPapMinusRawRep1 IMR9 cyto pA+ - 1 bigWig 1.000000 1362750.000000 IMR90 cytosol polyA+ clone-free RNA PET Minus signal Rep 1 from ENCODE/GIS 2 94 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 cytosol polyA+ clone-free RNA PET Minus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel IMR9 cyto pA+ - 1\ subGroups view=v2MinusRawSignal cellType=bIMR90 cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetImr90CytosolPapMinusRawRep1\ type bigWig 1.000000 1362750.000000\ wgEncodeCshlLongRnaSeqK562CellLongnonpolyaAlnRep2 K562 cel pA- A 2 bam K562 whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 94 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel K562 cel pA- A 2\ subGroups view=Alignments cellType=t1K562 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562CellLongnonpolyaAlnRep2\ type bam\ wgEncodeRikenCageK562CellPapMinusSignalRep1 K562 cell pA+ - 1 bigWig 0.050000 18315.849609 K562 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 94 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal on\ shortLabel K562 cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t1K562 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageK562CellPapMinusSignalRep1\ type bigWig 0.050000 18315.849609\ wgEncodeBroadHistoneK562Chd7a301223a1Sig K562 CHD7 bigWig 0.040000 386.600006 K562 CHD7 (A301-223A-1) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 94 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 CHD7 (A301-223A-1) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 CHD7\ subGroups view=Signal factor=CHD7A301223A1 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Chd7a301223a1Sig\ type bigWig 0.040000 386.600006\ wgEncodeOpenChromChipMcf7Pol2PkRep1 MCF-7 Pol2 Pk narrowPeak MCF-7 Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 94 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel MCF-7 Pol2 Pk\ subGroups treatment=AANONE view=Peaks factor=POL2 cellType=t2MCF7\ track wgEncodeOpenChromChipMcf7Pol2PkRep1\ type narrowPeak\ pgNA19649indel MXL NA19649 indel pgSnp MXL NA19649 indel (Complete Genomics) 0 94 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MXL NA19649 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel MXL NA19649 indel\ subGroups view=C_CG id=CG_div_GS19649 type=Indel\ track pgNA19649indel\ wgEncodeAwgDnaseDukeMyometrUniPk Myometr DNase narrowPeak Myometr DNaseI HS Uniform Peaks from ENCODE/Analysis 1 94 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Myometr DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Myometr DNase\ subGroups tier=a30 cellType=Myometr\ track wgEncodeAwgDnaseDukeMyometrUniPk\ wgEncodeOpenChromFairePancreasocPk Pancreas FAIRE Pk narrowPeak Pancreas FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 94 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Pancreas FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel Pancreas FAIRE Pk\ subGroups view=Peaks cellType=t3PANCREASOC treatment=AANONE\ track wgEncodeOpenChromFairePancreasocPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqA549CytosolShorttotalTapMinusRep3 A549 cyto TAP - 1 bigWig 1.000000 5539866.000000 A549 TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 95 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel A549 cyto TAP - 1\ subGroups view=MinusSignal cellType=t2A549 localization=CYTOSOL protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqA549CytosolShorttotalTapMinusRep3\ type bigWig 1.000000 5539866.000000\ wgEncodeUwDnaseAg09309PkRep2 AG09309 Pk 2 narrowPeak AG09309 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 95 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09309 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel AG09309 Pk 2\ subGroups view=Peaks cellType=t3AG09309 rep=rep2 treatment=None\ track wgEncodeUwDnaseAg09309PkRep2\ type narrowPeak\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_ctss_fwd AorticSmsToIL1b_05hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_forward 0 95 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep2%20%28LK56%29.CNhs13377.12758-136B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12758-136B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_tpm_fwd AorticSmsToIL1b_05hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_forward 1 95 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep2%20%28LK56%29.CNhs13377.12758-136B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12758-136B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsBe2cCtcfStdHotspotsRep1 BE2c CTCF Ht 1 broadPeak BE2c CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 95 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BE2c CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel BE2c CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3BE2C rep=rep1 treatment=aNone\ track wgEncodeUwTfbsBe2cCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeUwRepliSeqBjS4PctSignalRep1 BJ S4 1 bigWig 1.000000 100.000000 BJ S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 95 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BJ S4 1\ subGroups view=v1PctSignal cellType=t3BJ phase=p5S4 rep=rep1\ track wgEncodeUwRepliSeqBjS4PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseEcc1Dm002p1hSig ECC-1 DMSO DS bigWig 0.000000 0.563500 ECC-1 DMSO 0.02% DNaseI HS Density Signal from ENCODE/Duke 2 95 0 0 0 127 127 127 1 0 0 regulation 0 longLabel ECC-1 DMSO 0.02% DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel ECC-1 DMSO DS\ subGroups view=SIG cellType=t3ECC1 treatment=DM002P1H\ track wgEncodeOpenChromDnaseEcc1Dm002p1hSig\ type bigWig 0.000000 0.563500\ encTfChipPkENCFF761MGJ GM12878 CEBPB narrowPeak Transcription Factor ChIP-seq Peaks of CEBPB in GM12878 from ENCODE 3 (ENCFF761MGJ) 1 95 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of CEBPB in GM12878 from ENCODE 3 (ENCFF761MGJ)\ parent encTfChipPk off\ shortLabel GM12878 CEBPB\ subGroups cellType=GM12878 factor=CEBPB\ track encTfChipPkENCFF761MGJ\ wgEncodeHaibTfbsGm12878Pax5c20Pcr1xPkRep1 GM78 PAX5 PCR1 1 broadPeak GM12878 PAX5-C20 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 95 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 PAX5-C20 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 PAX5 PCR1 1\ subGroups view=Peaks factor=PAX5C20 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Pax5c20Pcr1xPkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878Yy1StdPk GM78 YY1 Std narrowPeak GM12878 YY1 Standard ChIP-seq Peaks from ENCODE/SYDH 3 95 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 YY1 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 YY1 Std\ subGroups view=Peaks factor=YY1 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Yy1StdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhH1hescBrca1IggrabUniPk H1-hESC BRCA1 narrowPeak H1-hESC TFBS Uniform Peaks of BRCA1_(A300-000A) from ENCODE/Stanford/Analysis 1 95 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of BRCA1_(A300-000A) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC BRCA1\ subGroups tier=a10 cellType=a10H1HESC factor=BRCA1 lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescBrca1IggrabUniPk\ wgEncodeUwDgfHipeSig HIPEpiC Sig bigWig 1.000000 125548.000000 HIPEpiC DNaseI DGF Per-base Signal from ENCODE/UW 2 95 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HIPEpiC DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HIPEpiC Sig\ subGroups view=Signal cellType=t3HIPEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHipeSig\ type bigWig 1.000000 125548.000000\ wgEncodeUwAffyExonArrayHmvecdblneoSimpleSignalRep1 HMVEC-dBl-Neo 1 broadPeak HMVEC-dBl-Neo Exon array Signal Rep 1 from ENCODE/UW 0 95 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMVEC-dBl-Neo Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMVEC-dBl-Neo 1\ subGroups cellType=t3HMVECDBLNEO rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHmvecdblneoSimpleSignalRep1\ type broadPeak\ wgEncodeDukeAffyExonHpde6e6e7SimpleSignalRep1V2 HPDE6-E6E7 1 bigBed 6 + HPDE6-E6E7 Exon array Signal Rep 1 from ENCODE/Duke 0 95 0 0 0 127 127 127 1 0 0 expression 1 longLabel HPDE6-E6E7 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HPDE6-E6E7 1\ subGroups cellType=t3HPDE6E6E7 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonHpde6e6e7SimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeHaibMethylRrbsHsmmDukeSitesRep1 HSMM 1 bed 9 + HSMM Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 95 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMM Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HSMM 1\ subGroups obtainedBy=DUKE cellType=t3HSMM treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHsmmDukeSitesRep1\ type bed 9 +\ wgEncodeUwHistoneHuvecH3k4me3StdHotspotsRep1 HUVE H3K4M3 Ht 1 broadPeak HUVEC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 95 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HUVE H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t2HUVEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeCaltechRnaSeqHuvecR1x75dSplicesRep1V2 HUVEC 1x75D Sp 1 bam HUVEC single read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 95 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC single read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel HUVEC 1x75D Sp 1\ subGroups view=Splices cellType=t2HUVEC insertLength=ilNa readType=r1x75D rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHuvecR1x75dSplicesRep1V2\ type bam\ wgEncodeGisRnaPetImr90CytosolPapMinusRawRep2 IMR9 cyto pA+ - 2 bigWig 1.000000 1212040.000000 IMR90 cytosol polyA+ clone-free RNA PET Minus signal Rep 2 from ENCODE/GIS 2 95 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 cytosol polyA+ clone-free RNA PET Minus signal Rep 2 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel IMR9 cyto pA+ - 2\ subGroups view=v2MinusRawSignal cellType=bIMR90 cloned=Free localization=cytosol rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeGisRnaPetImr90CytosolPapMinusRawRep2\ type bigWig 1.000000 1212040.000000\ wgEncodeCshlLongRnaSeqK562CellPamContigs K562 cel pA- C bed 6 + K562 whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 95 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel K562 cel pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1K562 localization=CELL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqK562CellPamContigs\ type bed 6 +\ wgEncodeRikenCageK562CellPapMinusSignalRep2 K562 cell pA+ - 2 bigWig 0.040000 18586.400391 K562 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 95 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel K562 cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t1K562 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageK562CellPapMinusSignalRep2\ type bigWig 0.040000 18586.400391\ wgEncodeBroadHistoneK562CtcfStdPk K562 CTCF broadPeak K562 CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 95 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks\ shortLabel K562 CTCF\ subGroups view=Peaks factor=CTCF cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562CtcfStdPk\ type broadPeak\ wgEncodeOpenChromChipMcf7Pol2Sig MCF-7 Pol2 DS bigWig 0.000000 3.522500 MCF-7 Pol2 TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 95 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 Pol2 TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel MCF-7 Pol2 DS\ subGroups treatment=AANONE view=SIG factor=POL2 cellType=t2MCF7\ track wgEncodeOpenChromChipMcf7Pol2Sig\ type bigWig 0.000000 3.522500\ pgNA19669 MXL NA19669 pgSnp MXL NA19669 (Complete Genomics) 0 95 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MXL NA19669 (Complete Genomics)\ parent pgSnpCg\ shortLabel MXL NA19669\ subGroups view=C_CG id=CG_div_GS19669 type=SNP\ track pgNA19669\ wgEncodeAwgDnaseUwNb4UniPk NB4 DNase narrowPeak NB4 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 95 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NB4 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel NB4 DNase\ subGroups tier=a30 cellType=NB4\ track wgEncodeAwgDnaseUwNb4UniPk\ wgEncodeOpenChromFairePancreasocSig Pancreas FAIRE DS bigWig 0.000000 1.547700 Pancreas FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 95 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Pancreas FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel Pancreas FAIRE DS\ subGroups view=SIG cellType=t3PANCREASOC treatment=AANONE\ track wgEncodeOpenChromFairePancreasocSig\ type bigWig 0.000000 1.547700\ wgEncodeCshlShortRnaSeqA549CytosolShorttotalTapMinusRep4 A549 cyto TAP - 2 bigWig 1.000000 5349724.000000 A549 TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 96 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel A549 cyto TAP - 2\ subGroups view=MinusSignal cellType=t2A549 localization=CYTOSOL protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqA549CytosolShorttotalTapMinusRep4\ type bigWig 1.000000 5349724.000000\ wgEncodeUwDnaseAg09309RawRep2 AG09309 Sg 2 bigWig 1.000000 51881.000000 AG09309 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 96 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG09309 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel AG09309 Sg 2\ subGroups view=zRSig cellType=t3AG09309 rep=rep2 treatment=None\ track wgEncodeUwDnaseAg09309RawRep2\ type bigWig 1.000000 51881.000000\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_ctss_rev AorticSmsToIL1b_05hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_reverse 0 96 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep2%20%28LK56%29.CNhs13377.12758-136B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12758-136B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_tpm_rev AorticSmsToIL1b_05hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_reverse 1 96 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep2%20%28LK56%29.CNhs13377.12758-136B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12758-136B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsBe2cCtcfStdPkRep1 BE2c CTCF Pk 1 narrowPeak BE2c CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 96 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BE2c CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel BE2c CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3BE2C rep=rep1 treatment=aNone\ track wgEncodeUwTfbsBe2cCtcfStdPkRep1\ type narrowPeak\ wgEncodeUwRepliSeqBjG2PctSignalRep1 BJ G2 1 bigWig 1.000000 100.000000 BJ G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 96 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BJ G2 1\ subGroups view=v1PctSignal cellType=t3BJ phase=p6G2 rep=rep1\ track wgEncodeUwRepliSeqBjG2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseEcc1Dm002p1hBaseOverlapSignal ECC-1 DMSO OS bigWig 0.000000 198.000000 ECC-1 DMSO 0.02% DNaseI HS Overlap Signal from ENCODE/Duke 2 96 0 0 0 127 127 127 1 0 0 regulation 0 longLabel ECC-1 DMSO 0.02% DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel ECC-1 DMSO OS\ subGroups view=SIGBO cellType=t3ECC1 treatment=DM002P1H\ track wgEncodeOpenChromDnaseEcc1Dm002p1hBaseOverlapSignal\ type bigWig 0.000000 198.000000\ encTfChipPkENCFF273ULT GM12878 CHD1 narrowPeak Transcription Factor ChIP-seq Peaks of CHD1 in GM12878 from ENCODE 3 (ENCFF273ULT) 1 96 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of CHD1 in GM12878 from ENCODE 3 (ENCFF273ULT)\ parent encTfChipPk off\ shortLabel GM12878 CHD1\ subGroups cellType=GM12878 factor=CHD1\ track encTfChipPkENCFF273ULT\ wgEncodeHaibTfbsGm12878Pax5c20Pcr1xRawRep1 GM78 PAX5 PCR1 1 bigWig 0.088808 142.625000 GM12878 PAX5-C20 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 96 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 PAX5-C20 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 PAX5 PCR1 1\ subGroups view=RawSignal factor=PAX5C20 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Pax5c20Pcr1xRawRep1\ type bigWig 0.088808 142.625000\ wgEncodeSydhTfbsGm12878Yy1StdSig GM78 YY1 Std bigWig 0.000000 15035.299805 GM12878 YY1 Standard ChIP-seq Signal from ENCODE/SYDH 2 96 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 YY1 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 YY1 Std\ subGroups view=Signal factor=YY1 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Yy1StdSig\ type bigWig 0.000000 15035.299805\ wgEncodeAwgTfbsSydhH1hescCebpbIggrabUniPk H1-hESC CEBPB narrowPeak H1-hESC TFBS Uniform Peaks of CEBPB from ENCODE/Stanford/Analysis 1 96 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of CEBPB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC CEBPB\ subGroups tier=a10 cellType=a10H1HESC factor=CEBPB lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescCebpbIggrabUniPk\ wgEncodeUwDgfHipeRaw HIPEpiC Raw bigWig 1.000000 217432.000000 HIPEpiC DNaseI DGF Raw Signal from ENCODE/UW 0 96 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HIPEpiC DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HIPEpiC Raw\ subGroups view=zRaw cellType=t3HIPEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHipeRaw\ type bigWig 1.000000 217432.000000\ wgEncodeUwAffyExonArrayHmvecdblneoSimpleSignalRep2 HMVEC-dBl-Neo 2 broadPeak HMVEC-dBl-Neo Exon array Signal Rep 2 from ENCODE/UW 0 96 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMVEC-dBl-Neo Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMVEC-dBl-Neo 2\ subGroups cellType=t3HMVECDBLNEO rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHmvecdblneoSimpleSignalRep2\ type broadPeak\ wgEncodeDukeAffyExonHpde6e6e7SimpleSignalRep2V2 HPDE6-E6E7 2 bigBed 6 + HPDE6-E6E7 Exon array Signal Rep 2 from ENCODE/Duke 0 96 0 0 0 127 127 127 1 0 0 expression 1 longLabel HPDE6-E6E7 Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HPDE6-E6E7 2\ subGroups cellType=t3HPDE6E6E7 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonHpde6e6e7SimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeHaibMethylRrbsHsmmDukeSitesRep2 HSMM 2 bed 9 + HSMM Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 96 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMM Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HSMM 2\ subGroups obtainedBy=DUKE cellType=t3HSMM treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHsmmDukeSitesRep2\ type bed 9 +\ wgEncodeUwHistoneHuvecH3k4me3StdPkRep1 HUVE H3K4M3 Pk 1 narrowPeak HUVEC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 96 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HUVE H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t2HUVEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k4me3StdPkRep1\ type narrowPeak\ wgEncodeCaltechRnaSeqHuvecR1x75dSplicesRep2V2 HUVEC 1x75D Sp 2 bam HUVEC single read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 96 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC single read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel HUVEC 1x75D Sp 2\ subGroups view=Splices cellType=t2HUVEC insertLength=ilNa readType=r1x75D rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHuvecR1x75dSplicesRep2V2\ type bam\ wgEncodeGisRnaPetImr90CytosolPapPlusRawRep1 IMR9 cyto pA+ + 1 bigWig 1.000000 1550300.000000 IMR90 cytosol polyA+ clone-free RNA PET Plus signal Rep 1 from ENCODE/GIS 2 96 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 cytosol polyA+ clone-free RNA PET Plus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel IMR9 cyto pA+ + 1\ subGroups view=v2PlusRawSignal cellType=bIMR90 cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetImr90CytosolPapPlusRawRep1\ type bigWig 1.000000 1550300.000000\ wgEncodeCshlLongRnaSeqK562CellPamJunctions K562 cel pA- J bed 6 + K562 whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 96 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel K562 cel pA- J\ subGroups view=Junctions cellType=t1K562 localization=CELL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqK562CellPamJunctions\ type bed 6 +\ wgEncodeRikenCageK562CellPapAlnRep1 K562 cell pA+ A 1 bam K562 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 96 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel K562 cell pA+ A 1\ subGroups view=Alignments cellType=t1K562 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageK562CellPapAlnRep1\ type bam\ wgEncodeBroadHistoneK562CtcfStdSig K562 CTCF bigWig 0.040000 11319.440430 K562 CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 96 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal\ shortLabel K562 CTCF\ subGroups view=Signal factor=CTCF cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562CtcfStdSig\ type bigWig 0.040000 11319.440430\ wgEncodeOpenChromChipMcf7Pol2BaseOverlapSignal MCF-7 Pol2 OS bigWig 0.000000 3498.000000 MCF-7 Pol2 TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 96 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 Pol2 TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel MCF-7 Pol2 OS\ subGroups treatment=AANONE view=SIGBO factor=POL2 cellType=t2MCF7\ track wgEncodeOpenChromChipMcf7Pol2BaseOverlapSignal\ type bigWig 0.000000 3498.000000\ pgNA19669indel MXL NA19669 indel pgSnp MXL NA19669 indel (Complete Genomics) 0 96 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MXL NA19669 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel MXL NA19669 indel\ subGroups view=C_CG id=CG_div_GS19669 type=Indel\ track pgNA19669indel\ wgEncodeAwgDnaseUwNhaUniPk NH-A DNase narrowPeak NH-A DNaseI HS Uniform Peaks from ENCODE/Analysis 1 96 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NH-A DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel NH-A DNase\ subGroups tier=a30 cellType=NH-A\ track wgEncodeAwgDnaseUwNhaUniPk\ wgEncodeOpenChromFairePancreasocBaseOverlapSignal Pancreas FAIRE OS bigWig 0.000000 2501.000000 Pancreas FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 96 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Pancreas FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel Pancreas FAIRE OS\ subGroups view=SIGBO cellType=t3PANCREASOC treatment=AANONE\ track wgEncodeOpenChromFairePancreasocBaseOverlapSignal\ type bigWig 0.000000 2501.000000\ wgEncodeCshlShortRnaSeqA549CytosolShorttotalTapPlusRep3 A549 cyto TAP + 1 bigWig 1.000000 4428397.000000 A549 TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 97 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 cyto TAP + 1\ subGroups view=PlusSignal cellType=t2A549 localization=CYTOSOL protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqA549CytosolShorttotalTapPlusRep3\ type bigWig 1.000000 4428397.000000\ wgEncodeUwDnaseAg09319HotspotsRep1 AG09319 Ht 1 broadPeak AG09319 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 97 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09319 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel AG09319 Ht 1\ subGroups view=Hot cellType=t3AG09319 rep=rep1 treatment=None\ track wgEncodeUwDnaseAg09319HotspotsRep1\ type broadPeak\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_ctss_fwd AorticSmsToIL1b_06hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_forward 0 97 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep1%20%28LK58%29.CNhs13357.12661-134I6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12661-134I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_06hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_tpm_fwd AorticSmsToIL1b_06hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_forward 1 97 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep1%20%28LK58%29.CNhs13357.12661-134I6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12661-134I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_06hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsBe2cCtcfStdRawRep1 BE2c CTCF Sg 1 bigWig 1.000000 23779.000000 BE2c CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 97 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BE2c CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel BE2c CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3BE2C rep=rep1 treatment=aNone\ track wgEncodeUwTfbsBe2cCtcfStdRawRep1\ type bigWig 1.000000 23779.000000\ wgEncodeUwRepliSeqBjPkRep1 BJ Pk 1 bed 9 BJ Repli-seq Peaks Rep 1 from ENCODE/UW 0 97 0 0 0 127 127 127 1 0 0 regulation 1 longLabel BJ Repli-seq Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPeaks off\ shortLabel BJ Pk 1\ subGroups view=v2Peaks cellType=t3BJ phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqBjPkRep1\ type bed 9\ wgEncodeOpenChromDnaseEcc1Est10nm30mPk ECC-1 Estr 30m Pk narrowPeak ECC-1 Estradiol 10 nM 30 m DNaseI HS Peaks from ENCODE/Duke 3 97 0 0 0 127 127 127 1 0 0 regulation 1 longLabel ECC-1 Estradiol 10 nM 30 m DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel ECC-1 Estr 30m Pk\ subGroups view=Peaks cellType=t3ECC1 treatment=EST10NM30M\ track wgEncodeOpenChromDnaseEcc1Est10nm30mPk\ type narrowPeak\ encTfChipPkENCFF499ZPP GM12878 CHD4 narrowPeak Transcription Factor ChIP-seq Peaks of CHD4 in GM12878 from ENCODE 3 (ENCFF499ZPP) 1 97 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of CHD4 in GM12878 from ENCODE 3 (ENCFF499ZPP)\ parent encTfChipPk off\ shortLabel GM12878 CHD4\ subGroups cellType=GM12878 factor=CHD4\ track encTfChipPkENCFF499ZPP\ wgEncodeHaibTfbsGm12878Pax5c20Pcr1xPkRep2 GM78 PAX5 PCR1 2 broadPeak GM12878 PAX5-C20 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 97 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 PAX5-C20 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 PAX5 PCR1 2\ subGroups view=Peaks factor=PAX5C20 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Pax5c20Pcr1xPkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12878Znf143166181apStdPk GM78 Z143 Std narrowPeak GM12878 Znf143 Standard ChIP-seq Peaks from ENCODE/SYDH 3 97 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Znf143 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 Z143 Std\ subGroups view=Peaks factor=ZNF143166181AP cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Znf143166181apStdPk\ type narrowPeak\ wgEncodeAwgTfbsBroadH1hescChd1a301218aUniPk H1-hESC CHD1 b narrowPeak H1-hESC TFBS Uniform Peaks of CHD1_(A301-218A) from ENCODE/Broad/Analysis 1 97 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of CHD1_(A301-218A) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC CHD1 b\ subGroups tier=a10 cellType=a10H1HESC factor=CHD1 lab=Broad\ track wgEncodeAwgTfbsBroadH1hescChd1a301218aUniPk\ wgEncodeUwDgfHmfHotspots HMF Hot broadPeak HMF DNaseI DGF Hotspots from ENCODE/UW 0 97 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMF DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HMF Hot\ subGroups view=Hotspots cellType=t3HMF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmfHotspots\ type broadPeak\ wgEncodeUwAffyExonArrayHmvecdlyadSimpleSignalRep1 HMVEC-dLy-Ad 1 broadPeak HMVEC-dLy-Ad Exon array Signal Rep 1 from ENCODE/UW 0 97 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMVEC-dLy-Ad Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMVEC-dLy-Ad 1\ subGroups cellType=t3HMVECDLYAD rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHmvecdlyadSimpleSignalRep1\ type broadPeak\ wgEncodeDukeAffyExonHsmmSimpleSignalRep1V2 HSMM 1 bigBed 6 + HSMM Exon array Signal Rep 1 from ENCODE/Duke 0 97 0 0 0 127 127 127 1 0 0 expression 1 longLabel HSMM Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HSMM 1\ subGroups cellType=t3HSMM treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonHsmmSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeHaibMethylRrbsHsmmfshdDukeSitesRep1 HSMM_FSHD 1 bed 9 + HSMM FSHD Methyl RRBS Rep 1 from ENCODE/HudsonAlpha 1 97 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMM FSHD Methyl RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HSMM_FSHD 1\ subGroups cellType=t3HSMMFSHD obtainedBy=DUKE treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHsmmfshdDukeSitesRep1\ type bed 9 +\ wgEncodeUwHistoneHuvecH3k4me3StdRawRep1 HUVE H3K4M3 Sg 1 bigWig 1.000000 3357.000000 HUVEC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 97 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HUVE H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t2HUVEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k4me3StdRawRep1\ type bigWig 1.000000 3357.000000\ wgEncodeGisRnaPetImr90CytosolPapPlusRawRep2 IMR9 cyto pA+ + 2 bigWig 1.000000 1488120.000000 IMR90 cytosol polyA+ clone-free RNA PET Plus signal Rep 2 from ENCODE/GIS 2 97 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 cytosol polyA+ clone-free RNA PET Plus signal Rep 2 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel IMR9 cyto pA+ + 2\ subGroups view=v2PlusRawSignal cellType=bIMR90 cloned=Free localization=cytosol rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeGisRnaPetImr90CytosolPapPlusRawRep2\ type bigWig 1.000000 1488120.000000\ wgEncodeCshlLongRnaSeqK562CellLongnonpolyaMinusRawSigRep1 K562 cel pA- - 1 bigWig 1.000000 812379.000000 K562 whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 97 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel K562 cel pA- - 1\ subGroups view=MinusSignal cellType=t1K562 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562CellLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 812379.000000\ wgEncodeRikenCageK562CellPapAlnRep2 K562 cell pA+ A 2 bam K562 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 97 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel K562 cell pA+ A 2\ subGroups view=Alignments cellType=t1K562 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageK562CellPapAlnRep2\ type bam\ wgEncodeBroadHistoneK562Ezh239875StdPk K562 EZH2 broadPeak K562 EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 97 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 EZH2\ subGroups view=Peaks factor=EZH239875 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Ezh239875StdPk\ type broadPeak\ wgEncodeCaltechRnaSeqLhcnm2R2x75Il200AlignsRep1V2 LHCN 2x75 A 1 bam LHCN-M2 Myoblast 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 97 0 0 0 127 127 127 0 0 0 expression 1 longLabel LHCN-M2 Myoblast 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel LHCN 2x75 A 1\ subGroups view=Aligns cellType=t2LHCNM2 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqLhcnm2R2x75Il200AlignsRep1V2\ type bam\ wgEncodeOpenChromChipMcf7Pol2SerumstvdPkRep1 MCF-7 Pol2 stv Pk narrowPeak MCF-7 serum starved Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 97 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 serum starved Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel MCF-7 Pol2 stv Pk\ subGroups view=Peaks factor=POL2 cellType=t2MCF7 treatment=SERUMSTAVD\ track wgEncodeOpenChromChipMcf7Pol2SerumstvdPkRep1\ type narrowPeak\ pgNA19670 MXL NA19670 pgSnp MXL NA19670 (Complete Genomics) 0 97 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MXL NA19670 (Complete Genomics)\ parent pgSnpCg\ shortLabel MXL NA19670\ subGroups view=C_CG id=CG_div_GS19670 type=SNP\ track pgNA19670\ wgEncodeAwgDnaseUwNhdfadUniPk NHDF-Ad DNase narrowPeak NHDF-Ad DNaseI HS Uniform Peaks from ENCODE/Analysis 1 97 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHDF-Ad DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel NHDF-Ad DNase\ subGroups tier=a30 cellType=NHDF-Ad\ track wgEncodeAwgDnaseUwNhdfadUniPk\ wgEncodeOpenChromFairePanisletsPk PanIslet FAIRE Pk narrowPeak PanIslets FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 97 0 0 0 127 127 127 1 0 0 regulation 1 longLabel PanIslets FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel PanIslet FAIRE Pk\ subGroups view=Peaks cellType=t3PANISLETS treatment=AANONE\ track wgEncodeOpenChromFairePanisletsPk\ type narrowPeak\ wgEncodeRikenCageA549CytosolPapTssHmm A549 cyto pA+ bed 6 A549 cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 98 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel A549 cyto pA+\ subGroups view=TssHmm cellType=t2A549 localization=cytosol rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageA549CytosolPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqA549CytosolShorttotalTapPlusRep4 A549 cyto TAP + 2 bigWig 1.000000 5125971.000000 A549 TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 98 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 cyto TAP + 2\ subGroups view=PlusSignal cellType=t2A549 localization=CYTOSOL protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqA549CytosolShorttotalTapPlusRep4\ type bigWig 1.000000 5125971.000000\ wgEncodeUwDnaseAg09319PkRep1V2 AG09319 Pk 1 narrowPeak AG09319 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 98 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09319 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel AG09319 Pk 1\ subGroups view=Peaks cellType=t3AG09319 rep=rep1 treatment=None\ track wgEncodeUwDnaseAg09319PkRep1V2\ type narrowPeak\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_ctss_rev AorticSmsToIL1b_06hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_reverse 0 98 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep1%20%28LK58%29.CNhs13357.12661-134I6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12661-134I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_06hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_tpm_rev AorticSmsToIL1b_06hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_reverse 1 98 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep1%20%28LK58%29.CNhs13357.12661-134I6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12661-134I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_06hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsBe2cCtcfStdHotspotsRep2 BE2c CTCF Ht 2 broadPeak BE2c CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 98 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BE2c CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel BE2c CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3BE2C rep=rep2 treatment=aNone\ track wgEncodeUwTfbsBe2cCtcfStdHotspotsRep2\ type broadPeak\ wgEncodeUwRepliSeqBjValleysRep1 BJ Vly 1 bed 9 BJ Repli-seq Valleys Rep 1 from ENCODE/UW 0 98 0 0 0 127 127 127 1 0 0 regulation 1 longLabel BJ Repli-seq Valleys Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewValleys off\ shortLabel BJ Vly 1\ subGroups view=v3Valleys cellType=t3BJ phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqBjValleysRep1\ type bed 9\ wgEncodeOpenChromDnaseEcc1Est10nm30mSig ECC-1 Estr 30m DS bigWig 0.000000 0.888500 ECC-1 Estradiol 10 nM 30 m DNaseI HS Density Signal from ENCODE/Duke 2 98 0 0 0 127 127 127 1 0 0 regulation 0 longLabel ECC-1 Estradiol 10 nM 30 m DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel ECC-1 Estr 30m DS\ subGroups view=SIG cellType=t3ECC1 treatment=EST10NM30M\ track wgEncodeOpenChromDnaseEcc1Est10nm30mSig\ type bigWig 0.000000 0.888500\ encTfChipPkENCFF534CKB GM12878 CREM narrowPeak Transcription Factor ChIP-seq Peaks of CREM in GM12878 from ENCODE 3 (ENCFF534CKB) 1 98 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of CREM in GM12878 from ENCODE 3 (ENCFF534CKB)\ parent encTfChipPk off\ shortLabel GM12878 CREM\ subGroups cellType=GM12878 factor=CREM\ track encTfChipPkENCFF534CKB\ wgEncodeHaibTfbsGm12878Pax5c20Pcr1xRawRep2 GM78 PAX5 PCR1 2 bigWig 0.225667 156.386993 GM12878 PAX5-C20 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 98 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 PAX5-C20 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 PAX5 PCR1 2\ subGroups view=RawSignal factor=PAX5C20 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Pax5c20Pcr1xRawRep2\ type bigWig 0.225667 156.386993\ wgEncodeSydhTfbsGm12878Znf143166181apStdSig GM78 Z143 Std bigWig 1.000000 12838.000000 GM12878 Znf143 Standard ChIP-seq Signal from ENCODE/SYDH 2 98 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Znf143 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 Z143 Std\ subGroups view=Signal factor=ZNF143166181AP cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Znf143166181apStdSig\ type bigWig 1.000000 12838.000000\ wgEncodeAwgTfbsSydhH1hescChd1a301218aIggrabUniPk H1-hESC CHD1 s narrowPeak H1-hESC TFBS Uniform Peaks of CHD1_(A301-218A) from ENCODE/Stanford/Analysis 1 98 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of CHD1_(A301-218A) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC CHD1 s\ subGroups tier=a10 cellType=a10H1HESC factor=CHD1 lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescChd1a301218aIggrabUniPk\ wgEncodeUwDgfHmfPkV2 HMF Pk narrowPeak HMF DNaseI DGF Peaks from ENCODE/UW 0 98 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMF DNaseI DGF Peaks from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HMF Pk\ subGroups view=Peaks cellType=t3HMF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmfPkV2\ type narrowPeak\ wgEncodeUwAffyExonArrayHmvecdlyadSimpleSignalRep2 HMVEC-dLy-Ad 2 broadPeak HMVEC-dLy-Ad Exon array Signal Rep 2 from ENCODE/UW 0 98 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMVEC-dLy-Ad Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMVEC-dLy-Ad 2\ subGroups cellType=t3HMVECDLYAD rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHmvecdlyadSimpleSignalRep2\ type broadPeak\ wgEncodeDukeAffyExonHsmmSimpleSignalRep2V2 HSMM 2 bigBed 6 + HSMM Exon array Signal Rep 2 from ENCODE/Duke 0 98 0 0 0 127 127 127 1 0 0 expression 1 longLabel HSMM Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HSMM 2\ subGroups cellType=t3HSMM treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonHsmmSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeHaibMethylRrbsHsmmfshdDukeSitesRep2 HSMM_FSHD 2 bed 9 + HSMM FSHD Methyl RRBS Rep 2 from ENCODE/HudsonAlpha 1 98 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMM FSHD Methyl RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HSMM_FSHD 2\ subGroups cellType=t3HSMMFSHD obtainedBy=DUKE treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHsmmfshdDukeSitesRep2\ type bed 9 +\ wgEncodeUwHistoneHuvecH3k4me3StdHotspotsRep2 HUVE H3K4M3 Ht 2 broadPeak HUVEC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 98 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HUVE H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t2HUVEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeGisRnaPetImr90CytosolPapAlnRep1 IMR9 cyto pA+ A 1 bam IMR90 cytosol polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS 0 98 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 cytosol polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel IMR9 cyto pA+ A 1\ subGroups view=v3Alignments cellType=bIMR90 cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetImr90CytosolPapAlnRep1\ type bam\ wgEncodeCshlLongRnaSeqK562CellLongnonpolyaMinusRawSigRep2 K562 cel pA- - 2 bigWig 1.000000 1504958.000000 K562 whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 98 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel K562 cel pA- - 2\ subGroups view=MinusSignal cellType=t1K562 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562CellLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 1504958.000000\ wgEncodeBroadHistoneK562Ezh239875StdSig K562 EZH2 bigWig 0.040000 32918.300781 K562 EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 98 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 EZH2\ subGroups view=Signal factor=EZH239875 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Ezh239875StdSig\ type bigWig 0.040000 32918.300781\ wgEncodeCaltechRnaSeqLhcnm2R2x75Th1014Il200USigRep1V4 LHCN 2x75 Sg 1 bigWig 0.016100 286176.343750 LHCN-M2 Myoblast 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech 2 98 0 0 0 127 127 127 0 0 0 expression 0 longLabel LHCN-M2 Myoblast 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel LHCN 2x75 Sg 1\ subGroups view=Signal cellType=t2LHCNM2 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqLhcnm2R2x75Th1014Il200USigRep1V4\ type bigWig 0.016100 286176.343750\ wgEncodeOpenChromChipMcf7Pol2SerumstvdSig MCF-7 Pol2 stv DS bigWig 0.000000 4.383900 MCF-7 serum starved Pol2 TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 98 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 serum starved Pol2 TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel MCF-7 Pol2 stv DS\ subGroups view=SIG factor=POL2 cellType=t2MCF7 treatment=SERUMSTAVD\ track wgEncodeOpenChromChipMcf7Pol2SerumstvdSig\ type bigWig 0.000000 4.383900\ pgNA19670indel MXL NA19670 indel pgSnp MXL NA19670 indel (Complete Genomics) 0 98 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MXL NA19670 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel MXL NA19670 indel\ subGroups view=C_CG id=CG_div_GS19670 type=Indel\ track pgNA19670indel\ wgEncodeAwgDnaseUwNhdfneoUniPk NHDF-neo DNase narrowPeak NHDF-neo DNaseI HS Uniform Peaks from ENCODE/Analysis 1 98 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHDF-neo DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel NHDF-neo DNase\ subGroups tier=a30 cellType=NHDF-neo\ track wgEncodeAwgDnaseUwNhdfneoUniPk\ wgEncodeOpenChromFairePanisletsSig PanIslet FAIRE DS bigWig 0.000000 0.373200 PanIslets FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 98 0 0 0 127 127 127 1 0 0 regulation 0 longLabel PanIslets FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel PanIslet FAIRE DS\ subGroups view=SIG cellType=t3PANISLETS treatment=AANONE\ track wgEncodeOpenChromFairePanisletsSig\ type bigWig 0.000000 0.373200\ wgEncodeRikenCageA549CytosolPapPlusRawRep3 A549 cyto pA+ + 3 bigWig 1.000000 433645.000000 A549 cytosol polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN 2 99 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 cytosol polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel A549 cyto pA+ + 3\ subGroups view=PlusRawSignal cellType=t2A549 localization=cytosol rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageA549CytosolPapPlusRawRep3\ type bigWig 1.000000 433645.000000\ wgEncodeCshlShortRnaSeqA549NucleusCiptapContigs A549 nucl CIP C bed 6 A549 CIP-TAP nucleus small RNA-seq Contigs from ENCODE/CSHL 2 99 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 CIP-TAP nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel A549 nucl CIP C\ subGroups view=Contigs rep=Pooled cellType=t2A549 localization=NUCLEUS protocol=CIPTAP rank=none\ track wgEncodeCshlShortRnaSeqA549NucleusCiptapContigs\ type bed 6\ wgEncodeUwDnaseAg09319RawRep1 AG09319 Sg 1 bigWig 1.000000 47177.000000 AG09319 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 99 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG09319 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel AG09319 Sg 1\ subGroups view=zRSig cellType=t3AG09319 rep=rep1 treatment=None\ track wgEncodeUwDnaseAg09319RawRep1\ type bigWig 1.000000 47177.000000\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_ctss_fwd AorticSmsToIL1b_06hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_forward 0 99 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep2%20%28LK59%29.CNhs13378.12759-136B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12759-136B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_06hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_tpm_fwd AorticSmsToIL1b_06hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_forward 1 99 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep2%20%28LK59%29.CNhs13378.12759-136B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12759-136B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_06hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsBe2cCtcfStdPkRep2 BE2c CTCF Pk 2 narrowPeak BE2c CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 99 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BE2c CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel BE2c CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3BE2C rep=rep2 treatment=aNone\ track wgEncodeUwTfbsBe2cCtcfStdPkRep2\ type narrowPeak\ wgEncodeUwRepliSeqBjWaveSignalRep1 BJ Ws 1 bigWig -5.426893 81.547684 BJ Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW 2 99 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewWaveSignal off\ shortLabel BJ Ws 1\ subGroups view=v4WaveSignal cellType=t3BJ phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqBjWaveSignalRep1\ type bigWig -5.426893 81.547684\ wgEncodeOpenChromDnaseEcc1Est10nm30mBaseOverlapSignal ECC-1 Estr 30m OS bigWig 0.000000 220.000000 ECC-1 Estradiol 10 nM 30 m DNaseI HS Overlap Signal from ENCODE/Duke 2 99 0 0 0 127 127 127 1 0 0 regulation 0 longLabel ECC-1 Estradiol 10 nM 30 m DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel ECC-1 Estr 30m OS\ subGroups view=SIGBO cellType=t3ECC1 treatment=EST10NM30M\ track wgEncodeOpenChromDnaseEcc1Est10nm30mBaseOverlapSignal\ type bigWig 0.000000 220.000000\ encTfChipPkENCFF833FTF GM12878 CTCF 1 on narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12878 from ENCODE 3 (ENCFF833FTF) 1 99 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12878 from ENCODE 3 (ENCFF833FTF)\ parent encTfChipPk off\ shortLabel GM12878 CTCF 1 on\ subGroups cellType=GM12878 factor=CTCF\ track encTfChipPkENCFF833FTF\ wgEncodeHaibTfbsGm12878Pax5n19Pcr1xPkRep1 GM78 PAX5 PCR1 1 broadPeak GM12878 PAX5-N19 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 99 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 PAX5-N19 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 PAX5 PCR1 1\ subGroups view=Peaks factor=PAX5N19 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Pax5n19Pcr1xPkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878Znf274StdPk GM78 Z274 Std narrowPeak GM12878 ZNF274 Standard ChIP-seq Peaks from ENCODE/SYDH 3 99 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ZNF274 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks on\ shortLabel GM78 Z274 Std\ subGroups view=Peaks factor=ZNF274 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Znf274StdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhH1hescChd2IggrabUniPk H1-hESC CHD2 narrowPeak H1-hESC TFBS Uniform Peaks of CHD2_(AB68301) from ENCODE/Stanford/Analysis 1 99 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of CHD2_(AB68301) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC CHD2\ subGroups tier=a10 cellType=a10H1HESC factor=CHD2 lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescChd2IggrabUniPk\ wgEncodeUwDgfHmfSig HMF Sig bigWig 1.000000 77693.000000 HMF DNaseI DGF Per-base Signal from ENCODE/UW 2 99 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMF DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HMF Sig\ subGroups view=Signal cellType=t3HMF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmfSig\ type bigWig 1.000000 77693.000000\ wgEncodeUwAffyExonArrayHmvecdlyneoSimpleSignalRep1 HMVEC-dLy-Neo 1 broadPeak HMVEC-dLy-Neo Exon array Signal Rep 1 from ENCODE/UW 0 99 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMVEC-dLy-Neo Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMVEC-dLy-Neo 1\ subGroups cellType=t3HMVECDLYNEO rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHmvecdlyneoSimpleSignalRep1\ type broadPeak\ wgEncodeDukeAffyExonHsmmSimpleSignalRep3V2 HSMM 3 bigBed 6 + HSMM Exon array Signal Rep 3 from ENCODE/Duke 0 99 0 0 0 127 127 127 1 0 0 expression 1 longLabel HSMM Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HSMM 3\ subGroups cellType=t3HSMM treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonHsmmSimpleSignalRep3V2\ type bigBed 6 +\ wgEncodeHaibMethylRrbsHsmmfshdDukeSitesRep3 HSMM_FSHD 3 bed 9 + HSMM FSHD Methyl RRBS Rep 3 from ENCODE/HudsonAlpha 1 99 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMM FSHD Methyl RRBS Rep 3 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HSMM_FSHD 3\ subGroups cellType=t3HSMMFSHD obtainedBy=DUKE treatment=zNone rep=rep3\ track wgEncodeHaibMethylRrbsHsmmfshdDukeSitesRep3\ type bed 9 +\ wgEncodeUwHistoneHuvecH3k4me3StdPkRep2 HUVE H3K4M3 Pk 2 narrowPeak HUVEC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 99 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HUVE H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t2HUVEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k4me3StdPkRep2\ type narrowPeak\ wgEncodeGisRnaPetImr90CytosolPapAlnRep2 IMR9 cyto pA+ A 2 bam IMR90 cytosol polyA+ clone-free RNA PET Alignments Rep 2 from ENCODE/GIS 0 99 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 cytosol polyA+ clone-free RNA PET Alignments Rep 2 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel IMR9 cyto pA+ A 2\ subGroups view=v3Alignments cellType=bIMR90 cloned=Free localization=cytosol rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeGisRnaPetImr90CytosolPapAlnRep2\ type bam\ wgEncodeCshlLongRnaSeqK562CellLongnonpolyaPlusRawSigRep1 K562 cel pA- + 1 bigWig 1.000000 803002.000000 K562 whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 99 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel K562 cel pA- + 1\ subGroups view=PlusSignal cellType=t1K562 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562CellLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 803002.000000\ wgEncodeBroadHistoneK562H2azStdPk K562 H2A.Z broadPeak K562 H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 99 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H2azStdPk\ type broadPeak\ wgEncodeCaltechRnaSeqLhcnm2R2x75Il200SplicesRep1V2 LHCN 2x75 Sp 1 bam LHCN-M2 Myoblast 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 99 0 0 0 127 127 127 0 0 0 expression 1 longLabel LHCN-M2 Myoblast 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel LHCN 2x75 Sp 1\ subGroups view=Splices cellType=t2LHCNM2 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqLhcnm2R2x75Il200SplicesRep1V2\ type bam\ wgEncodeOpenChromChipMcf7Pol2SerumstvdBaseOverlapSignal MCF-7 Pol2 stv OS bigWig 0.000000 4637.000000 MCF-7 serum starved Pol2 TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 99 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 serum starved Pol2 TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel MCF-7 Pol2 stv OS\ subGroups view=SIGBO factor=POL2 cellType=t2MCF7 treatment=SERUMSTAVD\ track wgEncodeOpenChromChipMcf7Pol2SerumstvdBaseOverlapSignal\ type bigWig 0.000000 4637.000000\ pgNA19735 MXL NA19735 pgSnp MXL NA19735 (Complete Genomics) 0 99 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MXL NA19735 (Complete Genomics)\ parent pgSnpCg\ shortLabel MXL NA19735\ subGroups view=C_CG id=CG_div_GS19735 type=SNP\ track pgNA19735\ wgEncodeAwgDnaseUwdukeNhekUniPk NHEK DNase narrowPeak NHEK DNaseI HS Uniform Peaks from ENCODE/Analysis 1 99 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHEK DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform on\ shortLabel NHEK DNase\ subGroups tier=a30 cellType=NHEK\ track wgEncodeAwgDnaseUwdukeNhekUniPk\ wgEncodeOpenChromFairePanisletsBaseOverlapSignal PanIslet FAIRE OS bigWig 0.000000 984.000000 PanIslets FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 99 0 0 0 127 127 127 1 0 0 regulation 0 longLabel PanIslets FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel PanIslet FAIRE OS\ subGroups view=SIGBO cellType=t3PANISLETS treatment=AANONE\ track wgEncodeOpenChromFairePanisletsBaseOverlapSignal\ type bigWig 0.000000 984.000000\ pgSnp1kG 1000 Genomes March 2010 pgSnp Personal Genome Variants 0 100 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Personal Genome Variants\ parent pgSnp\ shortLabel 1000 Genomes March 2010\ track pgSnp1kG\ view B_1kG\ visibility hide\ tgpArchive 1000G Archive 1000 Genomes Archive 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This supertrack is a collection of tracks from the\ 1000 Genomes Project showing\ paired-end accessible regions and integrated variant calls. More information about display\ conventions, methods, credits, and references can be found on each subtrack's description page.\

\

\ For more details, see:

\ \ \

Credits

\

\ Thanks to the International Genome Sample Resource (IGSR) for making these variant calls\ freely available.

\ varRep 0 cartVersion 2\ group varRep\ html ../tgpArchive\ longLabel 1000 Genomes Archive\ shortLabel 1000G Archive\ superTrack on\ track tgpArchive\ visibility hide\ tgpPhase1Accessibility 1000G Ph1 Accsbl bigBed 3 1000 Genomes Project Phase 1 Paired-end Accessible Regions 0 100 0 0 0 127 127 127 0 0 15 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22, varRep 1 chromosomes chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,\ compositeTrack on\ group varRep\ html tgpPhase1Ascessibility\ longLabel 1000 Genomes Project Phase 1 Paired-end Accessible Regions\ parent tgpArchive\ shortLabel 1000G Ph1 Accsbl\ track tgpPhase1Accessibility\ type bigBed 3\ visibility hide\ tgpPhase1 1000G Ph1 Vars vcfTabix 1000 Genomes Phase 1 Integrated Variant Calls: SNVs, Indels, SVs 0 100 0 0 0 127 127 127 0 0 24 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX,chrY,

Description

\

\ This track shows ~38,200,000 single nucleotide variants (SNVs),\ ~3,900,000 short insertion/deletion variants (indels),\ and ~14,000 large deletions (also called structural variants, or SVs)\ discovered by the\ 1000 Genomes Project\ through its\ Phase 1 sequencing of 1,092 genomes from 14 populations in Africa, Europe,\ East Asia and the Americas.

\

\ The variant genotypes have been phased by the 1000 Genomes Project\ (i.e., the two alleles of each diploid genotype have been assigned to two\ haplotypes,\ one inherited from each parent).\ This extra information enables a clustering of independent haplotypes\ by local similarity for display.\

\ \

Display Conventions

\

\ \ \ \ In "dense" mode, a vertical line is drawn at the position of each\ variant.\ In "pack" mode, since these variants have been phased, the\ display shows a clustering of haplotypes in the viewed range, sorted\ by similarity of alleles weighted by proximity to a central variant.\ The clustering view can highlight local patterns of linkage.

\

\ In the clustering display, each sample's phased diploid genotype is split\ into two independent haplotypes.\ Each haplotype is placed in a horizontal row of pixels; when the number of\ haplotypes exceeds the number of vertical pixels for the track, multiple\ haplotypes fall in the same pixel row and pixels are averaged across haplotypes.

\

\ Each variant is a vertical bar with white (invisible) representing the reference allele\ and black representing the non-reference allele(s).\ Tick marks are drawn at the top and bottom of each variant's vertical bar\ to make the bar more visible when most alleles are reference alleles.\ The vertical bar for the central variant used in clustering is outlined in purple.\ In order to avoid long compute times, the range of alleles used in clustering\ may be limited; alleles used in clustering have purple tick marks at the\ top and bottom.

\

\ The clustering tree is displayed to the left of the main image.\ It does not represent relatedness of individuals; it simply shows the arrangement\ of local haplotypes by similarity. When a rightmost branch is purple, it means\ that all haplotypes in that branch are identical, at least within the range of\ variants used in clustering.\

\ \

Methods

\

\ Single-nucleotide variants, short insertions/deletions, and larger deletions were called\ from alignments of 1,092 individuals' low-coverage genomes and high-coverage exomes.\ For each type of variant, the results of multiple variant-calling methods \ were merged and filtered in order to provide high-confidence variant calls.\ For more details, see:\

\

\ \

Credits

\

\ Thanks to the\ 1000 Genomes Project\ for making these data available in advance of publication.\

\ \

References

\ \

\ 1000 Genomes Pilot Project:
\ 1000 Genomes Project Consortium.\ \ A map of human genome variation from population-scale sequencing.\ Nature. 2010 Oct 28;467(7319):1061-73.\

\ \

\ Phase 1 of the 1000 Genomes Project:
\ 1000 Genomes Project Consortium, Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, Handsaker\ RE, Kang HM, Marth GT, McVean GA.\ \ An integrated map of genetic variation from 1,092 human genomes.\ Nature. 2012 Nov 1;491(7422):56-65.\

\ \

\ 1000 Genomes Frequently Asked Questions (FAQ)

\ varRep 1 chromosomes chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX,chrY\ group varRep\ html tgpPhase1\ longLabel 1000 Genomes Phase 1 Integrated Variant Calls: SNVs, Indels, SVs\ maxWindowToDraw 5000000\ parent tgpArchive\ shortLabel 1000G Ph1 Vars\ showHardyWeinberg on\ track tgpPhase1\ type vcfTabix\ visibility hide\ tgpPhase3Accessibility 1000G Ph3 Accsbl bigBed 3 1000 Genomes Project Phase 3 Paired-end Accessible Regions 3 100 0 0 0 127 127 127 0 0 22 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,

Description

\

\ This track shows which genome regions are more or less accessible to next\ generation sequencing methods that use short, paired-end reads. It summarizes whole\ genome sequencing data from Phase 3 of the\ 1000 Genomes Project and shows two\ levels of stringency: "pilot" stringency regions (see below) cover 94.5%\ of non-N bases in the genome (excluding alternate haplotype sequences and unplaced contigs;\ 95.9% on autosomes)\ and "strict" regions cover 75.5% (76.9% on autosomes). Each site which meets\ "strict" criteria also passes the "pilot" criteria.\

\ \

\ This track does not show a mask of regions in which variant calls can\ or cannot be made.\ Some 1000 Genomes Phase 3 variant calls are in regions that do not meet the\ "strict" criteria.\ Phase 3 variant calls are filtered using various tools such as the\ Variant Quality Score Recalibrator (VQSR)\ method (implemented in the\ Genome Analysis Toolkit (GATK))\ without regard to the thresholds applied here.\ VQSR and similar tools assess the evidence for variation at sites where a variant is called,\ but say nothing about the remaining sites.\ The 1000 Genomes Project Phase 3 variant calls combine information from low coverage sequencing,\ exome sequencing and array genotyping for improved sensitivity and specificity.\ The coverage masks are based on low coverage sequencing only.\

\ \

\ These regions will be useful for (a) comparing accessibility using current technologies\ to accessibility in the 1000 Genomes Pilot Project, and (b) population genetic\ analyses (such as estimates of mutation rate) that must focus on genomic regions\ with very low false positive and false negative rates.\

\ \

Methods

\

\ The total depth of mapped sequence reads, the average mapping quality score\ and the fraction of reads with mapping quality zero (meaning that this read maps\ equally well to more than one location in the genome) are tabulated from\ 1000 Genomes Project Phase 3 .bam files.\ This combines whole genome sequence data from 2,504 individuals,\ giving a genome wide average depth of coverage of 17,920 reads.\ Both "pilot" and "strict" tracks are .bed file conversions of the\ "pass" regions from\ .fasta mask files.\ See the\ README file in that directory and\ Supplementary Information (section 9.2)\ of 1000 Genomes Project Consortium, et al. (2015) for more details.\

\ \

\ The "pilot" criteria require a depth of coverage between 8,960 and 35,840 inclusive\ (between one-half and twice the average depth) and that no more than 20% of\ covering reads have mapping quality zero. These are equivalent to the criteria\ used for analyses in the 1000 Genomes Pilot paper (2010). The "strict" criteria\ require a depth of coverage between 8,960 and 26,880 inclusive, no more than 0.1%\ of reads with mapping quality zero, and an average mapping quality of 56 or greater.\ This definition is quite stringent and focuses on the most unique regions of the\ genome.\ Since approximately\ one-half of 1000 Genomes Project individuals are males, the depth of coverage\ is generally lower on the X chromosome. Coverage thresholds on the X chromosome were\ adjusted by a factor of 3/4 and on the Y chromosome by a factor of 1/2.\

\ \

Data Access

\ \

\ The raw data can be explored interactively with the \ Table Browser, or the\ Data Integrator.\ For automated analysis, the genome annotation is stored in a bigBed file that can be downloaded from the\ download server.\ The underlying data files for this track are called\ 20141020.pilot_mask.whole_genome.bb and 20141020.strict_mask.whole_genome.bb. \ Individual regions or the whole genome annotation can be obtained using our tool bigBedToBed \ which can be compiled from the source code or downloaded as a precompiled binary\ for your system. Instructions for downloading source code and binaries can be found\ here. \ The tool can also be used to obtain only features within a given range, for example:
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/1000Genomes/phase3/20141020.strict_mask.whole_genome.bb -chrom=chr6 -start=0 -end=1000000 stdout \
\ Please refer to our mailing list archives\ for questions, or our Data Access FAQ for more information. \

\ \

Credits

\

\ Thank you to\ Mary Kate Wing at the\ University of Michigan Center for Statistical Genetics\ for providing the track data files.\ Thank you to Tom Blackwell and Mary Kate Wing at UM for editing the description and methods.\

\ \

References

\

\ 1000 Genomes Project Consortium, Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA,\ Hurles ME, McVean GA.\ \ A map of human genome variation from population-scale sequencing.\ Nature. 2010 Oct 28;467(7319):1061-73.\ PMID: 20981092; PMC: PMC3042601\

\ \

\ 1000 Genomes Project Consortium, Auton A, Brooks LD, Durbin RM, Garrison EP, Kang HM, Korbel JO,\ Marchini JL, McCarthy S, McVean GA et al.\ \ A global reference for human genetic variation.\ Nature. 2015 Oct 1;526(7571):68-74.\ PMID: 26432245\

\ varRep 1 chromosomes chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9\ compositeTrack on\ group varRep\ html tgpPhase3Accessibility\ longLabel 1000 Genomes Project Phase 3 Paired-end Accessible Regions\ parent tgpArchive\ shortLabel 1000G Ph3 Accsbl\ track tgpPhase3Accessibility\ type bigBed 3\ visibility pack\ tgpPhase3 1000G Ph3 Vars vcfTabix 1000 Genomes Phase 3 Integrated Variant Calls: SNVs, Indels, SVs 3 100 0 0 0 127 127 127 0 0 24 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX,chrY,

Description

\

\ This track shows 84.7 million single nucleotide polymorphisms (SNPs),\ 3.6 million short insertions/deletions (indels), and 60,000 structural variants\ discovered by the\ 1000 Genomes Project\ through its\ Phase 3 sequencing of 2,504 genomes from 16 populations worldwide.

\

\ The variant genotypes have been phased by the 1000 Genomes Project\ (i.e., the two alleles of each diploid genotype have been assigned to two\ haplotypes,\ one inherited from each parent).\ This extra information enables a clustering of independent haplotypes\ by local similarity for display.\

\ \

Display Conventions

\

\ \ \ \ In "dense" mode, a vertical line is drawn at the position of each\ variant.\ In "pack" mode, since these variants have been phased, the\ display shows a clustering of haplotypes in the viewed range, sorted\ by similarity of alleles weighted by proximity to a central variant.\ The clustering view can highlight local patterns of linkage.

\

\ In the clustering display, each sample's phased diploid genotype is split\ into two independent haplotypes.\ Each haplotype is placed in a horizontal row of pixels; when the number of\ haplotypes exceeds the number of vertical pixels for the track, multiple\ haplotypes fall in the same pixel row and pixels are averaged across haplotypes.

\

\ Each variant is a vertical bar with white (invisible) representing the reference allele\ and black representing the non-reference allele(s).\ Tick marks are drawn at the top and bottom of each variant's vertical bar\ to make the bar more visible when most alleles are reference alleles.\ The vertical bar for the central variant used in clustering is outlined in purple.\ In order to avoid long compute times, the range of alleles used in clustering\ may be limited; alleles used in clustering have purple tick marks at the\ top and bottom.

\

\ The clustering tree is displayed to the left of the main image.\ It does not represent relatedness of individuals; it simply shows the arrangement\ of local haplotypes by similarity. When a rightmost branch is purple, it means\ that all haplotypes in that branch are identical, at least within the range of\ variants used in clustering.\

\ \

Methods

\

\ The genomes of 2,504 individuals were sequenced using both whole-genome sequencing\ (mean depth = 7.4x) and targeted exome sequencing (mean depth = 65.7x).\ \ Quoting the Phase 3 publication (1000 Genomes Project Consortium, 2015):\ \

\ In contrast to earlier phases of the project, we expanded analysis\ beyond bi-allelic events to include multi-allelic SNPs, indels, and a\ diverse set of structural variants (SVs). An overview of the sample\ collection, data generation, data processing, and analysis is given in\ Extended Data Fig. 1. Variant discovery used an ensemble of 24\ sequence analysis tools (Supplementary Table 2), and machine-learning\ classifiers to separate high-quality variants from potential false\ positives, balancing sensitivity and specificity. Construction of\ haplotypes started with estimation of long-range phased haplotypes\ using array genotypes for project participants and, where available,\ their first degree relatives; continued with the addition of high\ confidence bi-allelic variants that were analysed jointly to improve\ these haplotypes; and concluded with the placement of multi-allelic\ and structural variants onto the haplotype scaffold one at a time.\
\ \ See also:\ \

\ \

Credits

\

\ Thanks to the\ 1000 Genomes Project\ for making these data freely available.\

\ \

References

\

\ 1000 Genomes Project Consortium, Auton A, Brooks LD, Durbin RM, Garrison EP, Kang HM, Korbel JO,\ Marchini JL, McCarthy S, McVean GA et al.\ \ A global reference for human genetic variation.\ Nature. 2015 Oct 1;526(7571):68-74.\ PMID: 26432245\

\ varRep 1 chromosomes chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX,chrY\ geneTrack ncbiRefSeqCurated\ group varRep\ html tgpPhase3\ longLabel 1000 Genomes Phase 3 Integrated Variant Calls: SNVs, Indels, SVs\ maxWindowToDraw 5000000\ parent tgpArchive\ shortLabel 1000G Ph3 Vars\ showHardyWeinberg on\ track tgpPhase3\ type vcfTabix\ visibility pack\ ntSssTop5p 5% Lowest S bed 5 Selective Sweep Scan (S): 5% Smallest S scores 0 100 0 0 0 127 127 127 1 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,

Description

\

\ This track shows regions of the human genome with a strong signal for depletion\ of Neandertal-derived alleles (regions from the \ Sel Swp Scan \ (S) track with S scores in the lowest 5%),\ which may indicate an episode of positive selection in early\ humans.

\ \

Display Conventions and Configuration

\

\ Grayscale shading is used as a rough indicator of the strength of the\ score; the darker the item, the stronger its negative score. The\ strongest negative score (-8.7011) is shaded black, and the shading\ lightens from dark to light gray as the negative score weakens (weakest\ score is -4.3202).\

\ \

Methods

\

\ Green et al. identified single-base sites that are\ polymorphic among five modern human genomes of diverse ancestry\ (in the \ Modern Human \ Seq track) plus the human reference\ genome, and determined ancestral or derived state of each\ single nucleotide polymorphism (SNP) by comparison with the chimpanzee\ genome. The SNPs are displayed in the \ S SNPs track.\ The human allele states were used to estimate an expected number\ of derived alleles in Neandertal in the 100,000-base window around \ each SNP, and a measure called the S score was developed, displayed in the \ Sel Swp Scan \ (S) track, to compare the observed\ number of Neandertal alleles in each window to the expected number. \ An S score significantly less than zero indicates a reduction of \ Neandertal-derived alleles (or an increase of human-derived alleles not found in\ Neandertal), consistent with the scenario of positive selection in\ the human lineage since divergence from Neandertals.\

\

\ Genomic regions of 25,000 or more bases in which all polymorphic sites\ were at least 2 standard deviations below the expected value were\ identified, and S was recomputed on each such region. Regions with S\ scores in the lowest 5% (strongest negative scores) were prioritized\ for further analysis as described in Green et al..\

\ \

Credits

\

\ This track was produced at UCSC using data generated by\ Ed Green.\

\ \

References

\

\ Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH\ et al.\ \ A draft sequence of the Neandertal genome.\ Science. 2010 May 7;328(5979):710-22.\ PMID: 20448178\ Description\

\ AbSplice is a method that predicts aberrant splicing across human tissues, as described in Wagner, \ Çelik et al., 2023. This track displays precomputed AbSplice scores for all possible\ single-nucleotide variants genome-wide. The scores represent the probability that a given variant\ causes aberrant splicing in a given tissue.\ AbSplice scores\ can be computed from VCF files and are based on quantitative tissue-specific splice site annotations\ (SpliceMaps).\ While SpliceMaps can be generated for any tissue of interest from a cohort of RNA-seq samples, this \ track includes 49 tissues available from the \ Genotype-Tissue\ Expression (GTEx) dataset. \

\ \

Display Conventions

\

\ The AbSplice score is a probability estimate of how likely aberrant splicing of some sort takes \ place in a given tissue. The authors suggest three cutoffs which are represented by color in the track.\

\ \
    \
  • High (red) - \ An AbSplice score over 0.2 indicates a high likelihood of aberrant splicing in at least one tissue.
    • \
  • Medium (orange) - \ A score between 0.05 and 0.2 indicates a medium likelihood.
    • \
  • Low (blue) - \ A score between 0.01 and 0.05 indicates a low likelihood.
    • \
  • Scores below 0.01 are not displayed.
    • \
\

\ Mouseover on items shows the gene name, maximum score, and tissues that had this score. Clicking on\ any item brings up a table with scores for all 49 GTEX tissues.\

\ \

Data Access

\

\ The raw data can be explored interactively with the\ Table Browser, or the\ Data Integrator. \ For automated analysis, the data may be queried from our\ REST API.\ Please refer to our\ mailing list archives \ for questions, or our\ Data Access FAQ \ for more information.\

Precomputed AbSplice-DNA scores in all 49 GTEx tissues are available at\ \ Zenodo. \ \

Methods

\

\ Data was converted from the files (AbSplice_DNA_ hg19 _snvs_high_scores.zip) provided by the authors\ at zenodo.org. Files in the\ score_cutoff=0.01 directory were concatenated. To convert the data to bigBed format, scores and\ their tissues were selected from the AbSplice_DNA fields and maximum scores, and then calculated\ using a custom Python script, which can be found in the\ \ makeDoc from our GitHub repository.

\ \

Credits

\

\ Thanks to Nils Wagner for helpful comments and suggestions.

\ \

References

\

\ Wagner N, Çelik MH, Hölzlwimmer FR, Mertes C, Prokisch H, Yépez VA, Gagneur J.\ \ Aberrant splicing prediction across human tissues.\ Nat Genet. 2023 May;55(5):861-870.\ PMID: 37142848\

\ phenDis 1 bigDataUrl /gbdb/hg19/abSplice/AbSplice.bb\ filter.spliceABscore 0.01\ filterLabel.maxScore Tissues\ filterLabel.spliceABscore Filter by minimum AbSplice score\ filterLimits.spliceABscore 0.01:1\ filterText.maxScore *\ group phenDis\ html abSplice\ itemRgb on\ longLabel Aberrant Splicing Prediction Scores\ mouseOver change: $name
gene: $ENSGid
max score: $spliceABscore
$maxScore\ noScoreFilter on\ pennantIcon New red ../goldenPath/newsarch.html#042524 "Released Apr. 25, 2024"\ shortLabel AbSplice Scores\ track abSplice\ type bigBed 9 +\ visibility hide\ acembly AceView Genes genePred acemblyPep acemblyMrna AceView Gene Models With Alt-Splicing 0 100 155 0 125 205 127 190 0 0 0 https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=human&l=$$

Description

\

\ This track shows AceView gene models constructed from\ cDNA and genomic evidence by Danielle and Jean Thierry-Mieg\ using the Acembly program.

\ \

\ AceView is the only database that defines the genes\ genome-wide by using only, but exhaustively, the public experimental\ cDNA sequences from the same species. The analysis relies on the\ quality of the genome sequence and exploits sophisticated cDNA-to-genome \ co-alignment algorithms to provide a comprehensive and\ non-redundant representation of the GenBank, dbEST, GSS, Trace and\ RefSeq cDNA sequences. In a way, the AceView transcripts represent a\ fully annotated non-redundant ‘nr’ view of the public\ RNAs, minus cloning artefacts, contaminations and bad quality\ sequences. AceView transcripts represent a 10 times compaction\ relative to the raw data, with minimal loss of sequence\ information.

\ \

\ 87% of the public RNA sequences are coalesced into AceView alternative\ transcripts and genes, thereby identifying close to twice as many main\ genes as there are "known genes" in both human and\ mouse. 18% to 25% of the spliced genes appear non-coding, in mouse and\ human respectively. Alternative transcripts are prominent in both\ species. The typical human gene produces on average eight distinct\ alternatively spliced forms from three promoters and with three\ non-overlapping terminal exons. It has on average three cassette exons\ and four internal donor or acceptor sites. The AceView site further\ proposes a thorough biological annotation of the reconstructed genes,\ including association to diseases and tissue specificity of the\ alternative transcripts.

\ \

AceView combines respect for the experimental data with extensive\ quality control. Evaluated in the ENCODE regions, AceView transcripts\ are close to indistinguishable from the manually curated Gencode\ reference genes (see Thierry-Mieg, 2006, or compare the two tracks in the \ Genome Browser), but over the entire genome the number of transcripts exceeds\ Havana/Vega by a factor of three and RefSeq by a factor of six.

\ \

Display Conventions and Configuration

\

\ This track follows the display conventions for \ gene \ tracks. Gene models that fall into the "main" class\ are displayed in purple; "putative" \ genes are displayed in pink.

\ \

The main genes include at least one transcript which is spliced or\ putatively protein coding. Spliced genes contain at least one\ well-defined standard intron, i.e., an intron with a GT-AG or GC-AG\ boundary, supported by at least one clone matching exactly, with no\ ambiguous bases, 8 bases of the genome on each side of the intron.

\ \

The putative genes have no standard intron and do not encode good\ proteins, yet are supported by more than six cDNA clones.

\ \

\ The track description page offers the following filter and configuration\ options:\

    \
  • Gene Class filter: Select the main or putative\ option to filter the display. \
  • Color track by codons: Select the genomic codons option\ to color and label each codon in a zoomed-in display to facilitate validation \ and comparison to gene predictions. Click the \ Codon coloring help link \ on the track description page for more information about this feature.\
\

\ \

Methods

\

The millions of cDNA sequences available from the public databases\ (GenBank, dbEST, GSS, Traces, etc.) are aligned cooperatively on the\ genome sequence, taking care to keep the paired 5' and 3' reads from\ single clones associated in the same transcript. \ Useful information about tissue, stage, publications, isolation\ procedure and so on is gathered.

\ \

AceView alignments on the genome use knowledge on sequencing errors\ gained from analyzing sequencing traces and cooperative\ refinements. They are usually obtained over the entire length of the\ EST or mRNA, (average 98.8% aligned, 0.2% mismatches in mRNAs or 95.5%\ aligned, 1.4% mismatches in ESTs).

\ \

Multiple alignments are evaluated and the sequences are stringently\ kept only in their best position genome-wide. Less than 1% of the\ mRNAs and less than 2% of the ESTs will ultimately be aligned in more\ than one gene, usually in the ~1% closely repeated genes.

\ \

The cDNA sequences are then processed and cleaned: the vectors and\ polyA are clipped, the reads submitted on the wrong strand are\ flipped, and the small insertion or deletion polymorphisms are\ identified.

\ \

Eventual cDNA clone rearrangements or anomalous alignments are\ flagged and filtered (akin to manually) so as not to lose unique\ valuable information while avoiding pollution of the database with\ poorly supported anomalous data.

\ \

Unfortunately, cDNA libraries are still far from saturation, so\ after 20% of the suspicious entries have been removed, a single good-quality\ cDNA sequence, aligned with standard introns on the genome, is\ considered sufficient evidence for a given mRNA structure. That is\ because cDNA sequences are difficult to obtain, but they remain the\ cleanest and most reliable information to best define the molecular\ genes. Unspliced non-coding genes are however reported (in the\ putative class) only if they are supported by six or more accessions. Others \ belong to what is termed ‘the cloud’ (not displayed on\ the UCSC Genome Browser).

\ \

The cDNA sequences are clustered into a minimal number of\ alternative transcript variants, preferring partial transcripts to\ artificially extended ones. Sequences are concatenated by simple\ contact, but the combinatorics are voided by allowing each cDNA\ accession to contribute to a single alternative variant, preferably\ one where it merges silently without bringing any new sequence\ information. As a result, for instance, all shorter reads compatible\ with a full-length mRNA will be absorbed in that transcript and will not \ be available to allow for extensions on other incompatible\ transcripts.

\ \

About 70% of the variants, clearly identified on the Acembly site, have\ their entire coding region supported by a single cDNA; the others may\ be illicit concatenations that could be split when more data become\ available.

\ \

For each transcript, the consensus sequence of the cDNAs most\ compatible to the genome sequence is generated. Single base insertion,\ deletion, transition or transversion is shown graphically in the mRNA\ view, where frequent SNPs become evident.

\ \

The main sequence of the transcript used in the annotation is that\ of the footprint of the transcript on the genome, which is of better\ quality than the mRNAs: this procedure corrects up to 2% sequencing\ errors.

\ \

Putative protein-coding regions are predicted from the mRNA\ sequence and annotated using BlastP, PFAM, Psort2, and comparison to\ AceView proteins from other species. Best proteins are scored (see the\ FAQ on the Acembly site) and transcripts are putatively proposed to be \ protein-coding or non-coding.

\ \

Expression, cDNA support, tissue specificity, sequences of\ alternative transcripts, introns and exons, alternative promoters,\ alternative exons and alternative polyadenylation sites are evaluated\ and annotated on the Acembly web site.

\ \

The reconstructed alternative transcripts are then grouped into\ genes if they share at least one exact intron boundary or if they have\ substantial sequence overlap.

\ \

Coding and non-coding genes are defined, and genes in antisense are\ flagged.

\ \

AceView genes are matched molecularly to Entrez genes and named\ according to the official nomenclature or the Entrez Gene\ nomenclature. For novel genes not in Entrez, AceView creates new gene\ names that are maintained from release to release until the genes receive\ an official or Entrez gene name.

\ \

Each gene is annotated in depth, with the intention of AceView serving \ as a one-stop knowledgebase for systems biology. Selected functional\ annotations are gathered from various sources, including expression\ data, protein interactions and GO annotations. In particular, possible\ disease associations are extracted directly from PubMed, in addition\ to OMIM and GAD, and the users can help refine those annotations.

\ \

Finally, lists of the most closely related genes by function,\ pathway, protein complex, GO annotation, disease, cellular\ localization or all criteria taken together are proposed, to\ stimulate research and development.

\ \

Click the "AceView Gene Summary" on an individual transcript's\ details page to access the gene on the NCBI AceView website.

\ \

Credits

\

\ Thanks to \ \ Danielle and Jean Thierry-Mieg at NCBI for providing this track\ for human, worm and mouse.

\ \

References

\

\ Thierry-Mieg D, Thierry-Mieg J.\ \ AceView: a comprehensive cDNA-supported gene and transcripts annotation.\ Genome Biol. 2006;7 Suppl 1:S12.1-14.\ PMID: 16925834; PMC: PMC1810549\

\ \

\ AceView web site:\ https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly

\ \ genes 1 autoTranslate 0\ color 155,0,125\ gClass_cDNA_supported 200,0,125\ gClass_main 128,0,125\ gClass_putative 200,0,125\ geneClasses main putative cDNA_supported\ group genes\ html ../../acembly\ itemClassTbl acemblyClass\ longLabel AceView Gene Models With Alt-Splicing\ parent genePredArchive\ shortLabel AceView Genes\ track acembly\ type genePred acemblyPep acemblyMrna\ url https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=human&l=$$\ urlLabel AceView Gene Summary:\ visibility hide\ gnomADPextAdipose_Subcutaneous Adipose-Subcut bigWig 0 1 gnomAD pext Adipose-Subcutaneous 0 100 255 102 0 255 178 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Adipose_Subcutaneous.bw\ color 255,102,0\ longLabel gnomAD pext Adipose-Subcutaneous\ parent gnomadPext off\ shortLabel Adipose-Subcut\ track gnomADPextAdipose_Subcutaneous\ visibility hide\ gnomADPextAdipose_Visceral_Omentum_ Adipose-Visceral (Omentum) bigWig 0 1 gnomAD pext Adipose-Visceral (Omentum) 0 100 255 170 0 255 212 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Adipose_Visceral_Omentum_.bw\ color 255,170,0\ longLabel gnomAD pext Adipose-Visceral (Omentum)\ parent gnomadPext off\ shortLabel Adipose-Visceral (Omentum)\ track gnomADPextAdipose_Visceral_Omentum_\ visibility hide\ gnomADPextAdrenalGland Adrenal Gland bigWig 0 1 gnomAD pext Adrenal Gland 0 100 51 221 51 153 238 153 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/AdrenalGland.bw\ color 51,221,51\ longLabel gnomAD pext Adrenal Gland\ parent gnomadPext off\ shortLabel Adrenal Gland\ track gnomADPextAdrenalGland\ visibility hide\ affyArchive Affy Archive psl . Affymetrix Archive 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This supertrack is a collection of Affymetrix tracks showing the location of the consensus and\ exemplar sequences used for the selection of probes on the Affymetrix chips.\

\

Credits

\

\ Thanks to\ Affymetrix for the data underlying these tracks.\

\ expression 1 cartVersion 2\ group expression\ html ../affyArchive\ longLabel Affymetrix Archive\ shortLabel Affy Archive\ superTrack on\ track affyArchive\ type psl .\ visibility hide\ wgEncodeUwDnaseAg09319HotspotsRep2 AG09319 Ht 2 broadPeak AG09319 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09319 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel AG09319 Ht 2\ subGroups view=Hot cellType=t3AG09319 rep=rep2 treatment=None\ track wgEncodeUwDnaseAg09319HotspotsRep2\ type broadPeak\ wgEncodeGisRnaPetViewAlignments Alignments bam RNA Sub-cellular Localization by Paired-end diTag Sequencing from ENCODE/GIS 0 100 0 0 0 127 127 127 0 0 0 expression 1 bamColorMode gray\ bamGrayMode aliQual\ baseColorDefault diffBases\ baseColorUseSequence lfExtra\ indelDoubleInsert on\ indelQueryInsert on\ longLabel RNA Sub-cellular Localization by Paired-end diTag Sequencing from ENCODE/GIS\ maxWindowToDraw 1000000\ noColorTag .\ pairEndsByName on\ parent wgEncodeGisRnaPet\ shortLabel Alignments\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 100\ showNames off\ track wgEncodeGisRnaPetViewAlignments\ type bam\ view v3Alignments\ visibility hide\ wgEncodeGisRnaSeqViewAlignments Alignments bam RNA-seq from ENCODE/Genome Institute of Singapore 1 100 46 0 184 150 127 219 0 0 0 expression 1 bamColorMode strand\ bamGrayMode aliQual\ baseColorDefault diffBases\ baseColorUseSequence lfExtra\ color 46,0,184\ indelDoubleInsert on\ indelQueryInsert on\ longLabel RNA-seq from ENCODE/Genome Institute of Singapore\ maxWindowToDraw 1000000\ noColorTag .\ pairEndsByName on\ parent wgEncodeGisRnaSeq\ shortLabel Alignments\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 100\ showNames on\ track wgEncodeGisRnaSeqViewAlignments\ type bam\ view Alignments\ visibility dense\ wgEncodeCshlLongRnaSeqViewAlignments Alignments bam Long RNA-seq from ENCODE/Cold Spring Harbor Lab 0 100 0 0 0 127 127 127 0 0 0 expression 1 bamGrayMode aliQual\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Long RNA-seq from ENCODE/Cold Spring Harbor Lab\ maxWindowToDraw 100000\ pairEndsByName on\ parent wgEncodeCshlLongRnaSeq\ shortLabel Alignments\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 100\ showNames on\ track wgEncodeCshlLongRnaSeqViewAlignments\ type bam\ view Alignments\ visibility hide\ wgEncodeHaibRnaSeqViewAlignments Alignments bam RNA-seq from ENCODE/HAIB 0 100 0 0 0 127 127 127 0 0 0 expression 1 bamColorMode off\ longLabel RNA-seq from ENCODE/HAIB\ maxWindowToDraw 10000000\ parent wgEncodeHaibRnaSeq\ shortLabel Alignments\ showNames off\ track wgEncodeHaibRnaSeqViewAlignments\ type bam\ view Alignments\ visibility hide\ wgEncodeRikenCageViewAlignments Alignments bam RNA Subcellular CAGE Localization from ENCODE/RIKEN 0 100 0 0 0 127 127 127 0 0 0 expression 1 bamColorMode off\ bamGrayMode aliQual\ baseColorDefault diffBases\ baseColorUseSequence lfExtra\ indelDoubleInsert on\ indelQueryInsert on\ longLabel RNA Subcellular CAGE Localization from ENCODE/RIKEN\ maxWindowToDraw 10000\ pairEndsByName on\ parent wgEncodeRikenCage\ shortLabel Alignments\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 100\ showNames off\ track wgEncodeRikenCageViewAlignments\ type bam\ view Alignments\ visibility hide\ wgEncodeSunyRipSeqViewAlignments Alignments bam RIP-seq from ENCODE/SUNY Albany 0 100 0 0 0 127 127 127 0 0 0 regulation 1 bamColorMode off\ bamGrayMode aliQual\ baseColorDefault diffBases\ baseColorUseSequence lfExtra\ indelDoubleInsert on\ indelQueryInsert on\ longLabel RIP-seq from ENCODE/SUNY Albany\ maxWindowToDraw 1000000\ pairEndsByName on\ parent wgEncodeSunyRipSeq\ shortLabel Alignments\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 100\ showNames on\ track wgEncodeSunyRipSeqViewAlignments\ type bam\ view Alignments\ visibility hide\ wgEncodeSydhRnaSeqViewAlignments Alignments bam RNA-seq from ENCODE/Stanford/Yale/USC/Harvard 0 100 0 0 0 127 127 127 0 0 0 expression 1 bamColorMode off\ bamGrayMode aliQual\ baseColorDefault diffBases\ baseColorUseSequence lfExtra\ indelDoubleInsert on\ indelQueryInsert on\ longLabel RNA-seq from ENCODE/Stanford/Yale/USC/Harvard\ maxWindowToDraw 1000000\ noColorTag .\ pairEndsByName on\ parent wgEncodeSydhRnaSeq\ shortLabel Alignments\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 100\ showNames off\ track wgEncodeSydhRnaSeqViewAlignments\ type bam\ view Alignments\ visibility hide\ wgEncodeCaltechRnaSeqViewAligns Alignments bam RNA-seq from ENCODE/Caltech 0 100 0 0 0 127 127 127 0 0 0 expression 1 bamColorMode off\ bamGrayMode aliQual\ baseColorDefault diffBases\ baseColorUseSequence lfExtra\ indelDoubleInsert on\ indelQueryInsert on\ longLabel RNA-seq from ENCODE/Caltech\ pairEndsByName on\ parent wgEncodeCaltechRnaSeq\ shortLabel Alignments\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 100\ showNames on\ track wgEncodeCaltechRnaSeqViewAligns\ type bam\ view Aligns\ visibility hide\ wgEncodeGisDnaPetViewAlignments Alignments bam ENCODE Genome Institute of Singapore DNA Paired-End Ditags 1 100 0 0 0 127 127 127 0 0 0 varRep 1 longLabel ENCODE Genome Institute of Singapore DNA Paired-End Ditags\ parent wgEncodeGisDnaPet\ shortLabel Alignments\ track wgEncodeGisDnaPetViewAlignments\ view Alignments\ visibility dense\ altSeqLiftOverPsl Alt Haplotypes psl Reference Assembly Alternate Haplotype Sequence Alignments 3 100 0 0 100 127 127 177 0 0 0

Description

\ \

\ This track shows alignments of alternate locus (also known as "alternate haplotype")\ reference sequences to main chromosome sequences in the reference genome assembly.\ Some loci in the genome are highly variable, with sets of variants that tend\ to segregate into distinct haplotypes.\ Only one haplotype can be included in a reference assembly chromosome sequence.\ Instead of providing a separate complete chromosome sequence for each haplotype,\ which could cause confusion with divergent chromosome coordinates and\ ambiguity about which sequence is the official reference, the\ Genome Reference Consortium\ (GRC) adds alternate locus sequences, ranging from tens of thousands of bases\ up to low millions of bases in size, to represent the distinct haplotypes. \

\ \

Display Conventions and Configuration

\ \

\ This track follows the display conventions for\ \ PSL alignment tracks.\ Mismatching bases are highlighted in red.\ Several types of alignment gap may also be colored;\ for more information, see\ \ Alignment Insertion/Deletion Display Options.\ \

\ \

Credits

\

\ The alignments were provided by NCBI as GFF files and translated into the PSL\ representation for browser display by UCSC.\

\ map 1 baseColorDefault diffBases\ baseColorUseSequence db\ color 0,0,100\ group map\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Reference Assembly Alternate Haplotype Sequence Alignments\ pennantIcon p14 black https://genome-blog.gi.ucsc.edu/blog/patches/ "Includes annotations on GRCh38.p14 patch sequences"\ shortLabel Alt Haplotypes\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ track altSeqLiftOverPsl\ type psl\ visibility pack\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_ctss_rev AorticSmsToIL1b_06hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_reverse 0 100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep2%20%28LK59%29.CNhs13378.12759-136B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12759-136B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_06hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_tpm_rev AorticSmsToIL1b_06hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_reverse 1 100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep2%20%28LK59%29.CNhs13378.12759-136B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12759-136B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_06hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5\ urlLabel FANTOM5 Details:\ genotypeArrays Array Probesets bed 3 . Microarray Probesets 0 100 0 0 0 127 127 127 0 0 0

Affymetrix Arrays

\ \

Affymetrix Genome-Wide Human SNP Array 6.0 and SV

\ The SNP Array 6.0 includes more than 906,600 single nucleotide polymorphisms (SNPs) \ and more than 946,000 probes for the detection of copy number variation. \ The SNPs include the 482,000 SNPs from the 5.0 Array (unbiased selection).\ In addition, 424,000 new SNPs were chosen in the following areas:\
    \
  • Tag SNPs
    • \
  • SNPs from chromosomes X and Y
    • \
  • Mitochondrial SNPs
    • \
  • New SNPs added to dbSNP
    • \
  • SNPs in recombination hotspots
    • \
\

\ The structural variation copy number (SV) probes include 202,000 probes \ targeting 5,677 known CNV regions\ from the Toronto Database of Genomic Variants. The additional 744,000 probes \ are evenly spaced throughout the genome.\

\ \

Affymetrix Genome-Wide Human SNP Array 5.0

\ The SNP Array 5.0 is a single microarray featuring all single nucleotide \ polymorphisms (SNPs) from the original two-chip Mapping 500K Array Set, as \ well as 420,000 additional non-polymorphic probes that can measure other \ genetic differences, such as copy number variation.\ \

Affymetrix 500K (250K Nsp and 250K Sty)

\ This annotation displays the SNPs available for genotyping with the \ GeneChip Human Mapping 500K Array Set from Affymetrix. It is comprised of\ two arrays: Nsp and Sty, which contain approximately 262,000 and 238,000 SNPs,\ respectively.\ \

Affymetrix CytoScan HD

\ The CytoScan High-Density (HD) Array provides whole-genome coverage with \ enriched coverage of all constitutional and cancer-related genes on a \ single array. The complete CytoScan array includes:\ \
\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Genome buildhg19
Total number of copy-number markers2,696,550
Total number of non-polymorphic markers1,953,246
Number of SNP markers743,304
SNP markers with >99% genotype accuracy749,157
Autosomal markers2,491,915
Pseudoautosomal markers4,624
Intragenic markers1,410,535
Intergenic markers1,286,015
\
\ \

\ Probes are colored \ green for CNV probesets and\ purple for SNP probesets. \ Some SNP probesets are also considered informative for CNV detection.\

\ \

Agilent Arrays

\

\ Non-SNP subtracks are colored in alternating shades of\ green and\ orange\ to highlight track boundaries. SNP subtracks\ are colored blue with SNP probes colored\ dark blue and CGH probes\ colored\ light blue.\

\ \

\ The track consists of the following subtracks:\

\ The arrays listed in this track are probes from the\ Agilent Catalog Oligonucleotide Microarrays. The following table summarizes the different Agilent arrays:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
DescriptionAMADIDSamples per SlideBiological FeaturesMedian Probe SpacingGene-biasedSNPs
SurePrint G3 Human CGH Microarray 1x1M0215291969,0332.1 kbYes0
SurePrint G3 Human High-Resolution Microarray 1x1M0236421989,2142.6 kbNo (evenly tiled)0
SurePrint G3 Human CGH+SNP Microarray 2x400K0280812411,4347 kbYes65,000
SurePrint G3 Human CGH Microarray 2x400K0218502415,9145.3 kbYes0
SurePrint G3 Human Cancer CGH+SNP Microarray 4x180K0305874172,59525 kbYes (cancer genes)65,000
SurePrint G3 Human CGH+SNP Microarray 4x180K0298304172,59525 kbNo (ISCA regions)65,000
SurePrint G3 Human CGH Microarray 4x180K0220604174,67513 kbYes0
SurePrint G3 Human CGH Microarray 8x60K021924859,17541 kbYes0
SurePrint HD Human CGH Microarray 1x244K0146931238,3318.9 kbYes0
SurePrint HD Human CGH Microarray 2x105K0146982100,03422 kbYes0
SurePrint HD Human CGH Microarray 4x44K014950443,14343 kbYes0
GenetiSure Cyto CGH+SNP 4x180K085591
GenetiSure Cyto CGH 4x180K085589
GenetiSure Cyto CGH 8x60k085590
\ \

Illumina Arrays

\ \

Illumina HumanHap650Y

\ This annotation displays the SNPs available for genotyping with Illumina's\ HumanHap650Y Genotyping BeadChip. The HumanHap650Y contains over 650,000 markers,\ extending the HumanHap550 by adding 100,000 additional Yoruba-specific tag\ SNPs. On average, there is 1 SNP every 5.3 kb, 6.2 kb and 5.4 kb across\ the genome in the CEU, CHB+JPT and YRI populations, respectively.\ The HumanHap650Y was derived from release 21 of the \ \ International HapMap Project.\ \

Illumina HumanHap550

\ This annotation displays the SNPs available for genotyping with Illumina's\ HumanHap550 Genotyping BeadChip. The HumanHap550 contains over 550,000 markers,\ the majority of which are tag SNPs \ derived from release 20 of the \ \ International HapMap Project. In addition,\ approximately 7800 non-synonymous SNPs, a higher density of tag SNPs in\ the MHC region, over 150 mitochondrial SNPs and over 4000\ SNPs from regions with copy number polymorphism were included. \ In the CEU population, an r-squared threshold of 0.8 was used\ for common SNPs in genes, within 10 kb of genes or in evolutionarily\ conserved regions. For all other regions, an r-squared threshold of 0.7 was used.\ On average, there is 1 SNP every 5.5 kb, 6.5 kb and 6.2 kb across the genome in \ the CEU, CHB+JPT and YRI populations, respectively.\ \

Illumina HumanHap300

\ This annotation displays the SNPs available for genotyping with Illumina's\ HumanHap300 Genotyping BeadChip. The HumanHap300 contains over 317,000 tagSNP markers\ derived from Phase I of the \ \ International HapMap Project. In addition,\ approximately 7300 non-synonymous SNPs and a higher density of tag SNPs in\ the MHC region were included. On average, there is 1 SNP every 9 kb across\ the genome and median spacing is 5 kb.\ \

Illumina Human1M-Duo

\ This annotation displays the SNPs available for genotyping with Illumina's\ Human1M-Duo Genotyping BeadChip. The Human1M-Duo contains more than 1,100,000 tagSNP markers\ and a set of ~60,000 additional CNV-targeted markers. \ The median spacing is 1.5kb (mean - 2.4 kb).\ \

Illumina HumanOmni1-Quad v1

\ The HumanOmni1-Quad BeadChip consists of 1,140,419 markers in a 4-sample\ format. The whole-genome content provides high\ genomic coverage rates of 93%, 92%, and 76% at r2 > 0.8 for the CEU,\ CHB+JPT, and YRI populations, respectively. High density markers with a\ median spacing of 1.2 kb ensure the highest level of resolution for CNV\ and breakpoint identification.\ \ The content has been derived from the 1,000 Genomes Project,\ all three HapMap phases, and recently published studies, including \ new coding variants identified by the 1000 Genomes Project and\ markers chosen in high-value regions of the genome: ABO blood\ typing SNPs, cSNPs, disease-associated SNPs, eSNPs, SNPs in mRNA splice\ sites, ADME genes, AIMs, HLA complexes, indels, introns, MHC regions,\ miRNA binding sites, mitochondrial DNA, PAR, promoter regions, and\ Y-chromosome.\ \

Illumina Human660W-Quad v1

\ The Human660W-Quad BeadChip consists of 657,366 markers in a 4-sample\ format. The Human660W-Quad BeadChip provides 87%, 85%, and 56% coverage\ of CEU, CHB+JPT, and YRI populations at r2 > 0.8. For \ CNV and cytogenetic analysis, the dense backbone content is combined\ with an additional ~100,000 markers that target observed common CNVs.\ \

HumanCytoSNP-12 v2.1

\ \ The 301,232 markers on the HumanCytoSNP-12 represents a complete 12-sample panel of \ genome-wide SNPs for a uniform backbone and additional markers targeting all regions of \ known cytogenetic importance. Backbone markers provide genome-wide marker spacing of 10kb. \ This is supplemented with dense coverage (at 6 kb spacing average) of ~250 genomic regions \ commonly studied in cytogenetics labs and targeted coverage in ~400 additional genes, \ subtelomeric regions, pericentromeric regions, and sex chromosomes. \ An efficiency-optimized tagging strategy provides a panel for GWAS \ (70% coverage in CEU at r2 > 0.8) in the highest throughput and most cost-effective \ whole-genome DNA Analysis BeadChip.\ \

Illumina Global Diversity Array

\

\ The\ Global Diversity Array-8 v1.0 BeadChip includes coverage of the ACMG 59-gene\ clinical research variants and multi-ethnic, genome-wide content. The GDA is the commercial version\ of the array chosen by the All of Us Research\ Program and is designed to capture a wider range of the world's populationsthan traditional\ microarrays.

\ \

Illumina 450k and 850k Methylation Arrays

\

\ With the Infinium MethylationEPIC BeadChip Kit, researchers can interrogate over 850,000\ methylation sites quantitatively across the genome at single-nucleotide resolution. Multiple\ samples, including FFPE, can be analyzed in parallel to deliver high-throughput power while\ minimizing the cost per sample. These tracks show positions being measured on the Illumina 450k and\ 850k (EPIC) microarray tracks. More information about the arrays can be found on the\ Infinium MethylationEPIC Kit website.\ \

Illumina CytoSNP 850K Probe Array

\

\ The Infinium CytoSNP-850K v1.2 BeadChip provides comprehensive coverage of\ cytogenetically relevant genes on a proven platform, helping researchers find valuable information\ that may be missed by other technologies. It contains approximately 850,000 empirically selected\ single nucleotide polymorphisms (SNPs) spanning the entire genome with enriched coverage for 3,262\ genes of known cytogenetics relevance in both constitutional and cancer applications. Items in this\ track are colored according to their strand orientation. Blue indicates\ alignment to the negative strand, and red indicates alignment to the\ positive strand.\

\ \ \

Methods

\

\ Position, strand, and polymorphism data were obtained from Affymetrix and \ supplemented with links to corresponding dbSNP rsIDs based on a positional\ lookup into \ \ dbSNP. The Affy 6.0 Array is based on dbSNP build 127; the Affy 5.0 Array \ is based on dbSNP build 126. The Affy 500K Array is based on dbSNP build 125 \ and was translated from hg17 by UCSC using rsID lookup. \ In fewer than 2% of the cases, a dbSNP rsID was\ not present in dbSNP at the Affymetrix array position. \ Reference allele information was retrieved from the UCSC database based on dbSNP position\ and strand data. \

\

\ Illumina data were supplied as rsIDs and position based on dbSNP build 126. \ Strand, polymorphism and reference allele information was retrieved from the UCSC database \ based on rsID and position.\ The Illumina arrays are comprised of probes for 4 of the possible single-base substitutions:\ A/C, A/G, C/T and G/T. A/T and C/G probes will be available in future arrays.\

\

\ For Illumina Human1M-Duo, the position, strand, polymorphism and reference allele information was \ retrieved from the snp129 table of UCSC database if the marker ID can be found in dbSNP 129, \ otherwise the information is retrieved from the data provided by Illumina.\

\

\ For Illumina HumanOmni1-Quad, Human660W-Quad, and HumanCytoSNP-12, \ the position, strand, polymorphism and reference allele information was \ retrieved from the snp130 table of UCSC database if the marker ID can be found in dbSNP 130, \ otherwise the information is retrieved from the data provided by Illumina.\

\

\ Agilent's oligonucleotide CGH (Comparative Genomic Hybridization) platform enables the \ study of genome-wide DNA copy number changes at a high resolution. The CGH probes on Agilent \ aCGH microarrays are 60-mer oligonucleotides synthesized in situ using Agilent's inkjet \ SurePrint technology. The probes represented on the Agilent CGH microarrays have been \ selected using algorithms developed specifically for the CGH application, assuring optimal \ performance of these probes in detecting DNA copy number changes. \

\

\ The Agilent SurePrint G3 CGH+SNP microarrays are designed for high quality human DNA \ copy-number profiling combined with the simultaneous detection of copy-neutral \ aberrations, such as lack or loss of heterozygosity (LOH) and uniparental disomy (UPD). \ Identification of LOH/UPD is enabled by the presence of a set of SNP probes on the CGH+SNP \ microarrays resulting in ~5-10 Mb resolution for copy neutral LOH/UPD detection across the \ entire genome.\

\

\ The Agilent catalog CGH and CGH+SNP microarrays are printed on 1 in. x 3 in. glass slides and are \ available in several formats. The human catalog SurePrint G3 microarrays formats are the 1x1M \ (gene-biased or evenly tiled), 2x400K (CGH-only or CGH+SNP), 4x180K (CGH-only or CGH+SNP), \ and 8x60K. The legacy human catalog SurePrint HD microarrays are the 1x244K, 2x105K, and \ 4x44K. \

\

\ Non-SNP subtracks are colored in alternating shades of \ green and orange to highlight track boundaries. SNP subtracks \ are colored blue with SNP probes colored dark blue and \ CGH probes colored light blue. The track consists of the \ following subtracks:\

\

\ The Illumina 450k track was created using a custom track by Brooke Rhead (\ brhead@gmail.\ com) and then converted into a bigBed.\

\

\ The Illumina 850k (EPIC) track was created using a few columns from the\ Infinium MethylationEPIC v1.0 B5 Manifest File (CSV Format)\ and was then converted into a bigBed.

\

\ The Illumina CytoSNP-850K track was created by downloading the\ CytoSNP-850K v1.2 Manifest File (CSV Format) file and then converted into a\ bigBed file using the hg19 coordinates.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API\ or downloaded from our \ Downloads site. Please refer to our\ \ mailing list archives for questions, or our\ \ Data Access FAQ for more information.\

\ \

References

\

\ More information on Agilent Oligonucleotide Microarrays can be found on \ Agilent's website.\

\

\ Barrett MT, Scheffer A, Ben-Dor A, Sampas N, Lipson D, Kincaid R, Tsang P, Curry B, Baird K, Meltzer\ PS et al.\ \ Comparative genomic hybridization using oligonucleotide microarrays and total genomic DNA.\ Proc Natl Acad Sci U S A. 2004 Dec 21;101(51):17765-70.\ PMID: 15591353; PMC: PMC535426\

\ \

\ More information on the Affymetrix arrays is available at these sites:\

\ \ More information on the Illumina arrays is available at these sites:\ \

\ \

Credits

\

\ Thanks to Shane Giles, Peter Webb, and Anniek De Witte from Agilent\ Technologies, Venu Valmeekam from Affymetrix, and Luana Galver and\ Jennifer L. Stone from Illumina for\ providing these data.\

\ varRep 1 compositeTrack on\ configurable off\ group varRep\ longLabel Microarray Probesets\ noInherit on\ noScoreFilter .\ shortLabel Array Probesets\ track genotypeArrays\ type bed 3 .\ visibility hide\ gnomADPextArtery_Aorta Artery-Aorta bigWig 0 1 gnomAD pext Artery-Aorta 0 100 255 85 85 255 170 170 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Artery_Aorta.bw\ color 255,85,85\ longLabel gnomAD pext Artery-Aorta\ parent gnomadPext off\ shortLabel Artery-Aorta\ track gnomADPextArtery_Aorta\ visibility hide\ gnomADPextArtery_Coronary Artery-Coronary bigWig 0 1 gnomAD pext Artery-Coronary 0 100 255 170 153 255 212 204 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Artery_Coronary.bw\ color 255,170,153\ longLabel gnomAD pext Artery-Coronary\ parent gnomadPext off\ shortLabel Artery-Coronary\ track gnomADPextArtery_Coronary\ visibility hide\ gnomADPextArtery_Tibial Artery-Tibial bigWig 0 1 gnomAD pext Artery-Tibial 0 100 255 0 0 255 127 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Artery_Tibial.bw\ color 255,0,0\ longLabel gnomAD pext Artery-Tibial\ parent gnomadPext off\ shortLabel Artery-Tibial\ track gnomADPextArtery_Tibial\ visibility hide\ gold Assembly bed 3 + Assembly from Fragments 0 100 150 100 30 230 170 40 0 0 0

Description

\

This track shows the finished assembly of the human genome.\ This assembly merges contigs from overlapping drafts and\ finished clones into longer sequence contigs. The sequence\ contigs are ordered and oriented when possible by mRNA, EST,\ paired plasmid reads (from the SNP Consortium) and BAC end\ sequence pairs.

\

In dense mode, this track depicts the path through the draft and \ finished clones (aka the golden path) used to create the assembled sequence. \ Clone boundaries are distinguished by the use of alternating gold and brown \ coloration. Where gaps\ exist in the path, spaces are shown between the gold and brown\ blocks. If the relative order and orientation of the contigs\ between the two blocks is known, a line is drawn to bridge the\ blocks.

\

\ Clone Type Key:\

    \
  • F - Finished (HTGS phase 3)\
  • O - Other sequence (typically means no HTG keyword)\
  • P - Pre draft\
  • W - WGS contig\
\ \

See also

\

\ NCBI discussion of genome\ \ assembly procedures.\

\ \

Credits

\

\ The Feb. 2009 human reference sequence (GRCh37) was produced by the\ \ Genome Reference Consortium.\

\ map 1 altColor 230,170,40\ color 150,100,30\ group map\ longLabel Assembly from Fragments\ shortLabel Assembly\ track gold\ type bed 3 +\ visibility hide\ augustusGene AUGUSTUS genePred AUGUSTUS ab initio gene predictions v3.1 3 100 12 105 0 133 180 127 0 0 0

Description

\ \

\ This track shows ab initio predictions from the program\ AUGUSTUS (version 3.1).\ The predictions are based on the genome sequence alone.\

\ \

\ For more information on the different gene tracks, see our Genes FAQ.

\ \

Methods

\ \

\ Statistical signal models were built for splice sites, branch-point\ patterns, translation start sites, and the poly-A signal.\ Furthermore, models were built for the sequence content of\ protein-coding and non-coding regions as well as for the length distributions\ of different exon and intron types. Detailed descriptions of most of these different models\ can be found in Mario Stanke's\ dissertation.\ This track shows the most likely gene structure according to a\ Semi-Markov Conditional Random Field model.\ Alternative splicing transcripts were obtained with\ a sampling algorithm (--alternatives-from-sampling=true --sample=100 --minexonintronprob=0.2\ --minmeanexonintronprob=0.5 --maxtracks=3 --temperature=2).\

\ \

\ The different models used by Augustus were trained on a number of different species-specific\ gene sets, which included 1000-2000 training gene structures. The --species option allows\ one to choose the species used for training the models. Different training species were used\ for the --species option when generating these predictions for different groups of\ assemblies.\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Assembly GroupTraining Species
Fishzebrafish\ \
Birdschicken\ \
Human and all other vertebrateshuman\ \
Nematodescaenorhabditis
Drosophilafly
A. melliferahoneybee1
A. gambiaeculex
S. cerevisiaesaccharomyces
\

\ This table describes which training species was used for a particular group of assemblies.\ When available, the closest related training species was used.\

\ \

Credits

\ \ Thanks to the\ Stanke lab\ for providing the AUGUSTUS program. The training for the chicken version was\ done by Stefanie König and the training for the\ human and zebrafish versions was done by Mario Stanke.\ \

References

\ \

\ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\

\ \

\ Stanke M, Waack S.\ \ Gene prediction with a hidden Markov model and a new intron submodel.\ Bioinformatics. 2003 Oct;19 Suppl 2:ii215-25.\ PMID: 14534192\

\ genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 12,105,0\ group genes\ html ../../augustusGene\ longLabel AUGUSTUS ab initio gene predictions v3.1\ parent genePredArchive\ shortLabel AUGUSTUS\ track augustusGene\ type genePred\ visibility pack\ avada Avada Variants bigBed 9 + Avada Variants extracted from full text publications 1 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ This track shows the genomic positions of variants in the\ AVADA database. \ AVADA is a database of variants built by a machine learning software\ that analyzes full text research articles to find the gene mentions in the text that \ look like they are most relevant for monogenic (non-cancer) genetic diagnosis, finds variant \ descriptions and uses the genes to map the variants to the genome. For details see the \ AVADA paper.\

\

As the data is automatically extracted from full-text publications, it includes \ some false positives. In the original study, out of 200 randomly selected articles,\ only 99 were considered relevant after manual curation. However, this share is very high\ compared to the Genomenom track. Ideally, the track is used\ in combination with variants found in human patients, to find relevant literature, \ or with Genome Browser tracks of variant databases that curated a single study \ for each variant, like our tracks for HGMD or LOVD.\

\ \

Display Conventions and Configuration

\ \

\ Genomic locations of a variants are labeled with the variant description\ in the original text. This is not a normalized HGVS string, but the original\ text as the authors of the study described it.\ The Pubmed ID, gene and transcript for each variant are shown on the\ variant's details page, as well as the PubMed title, authors, and abstract. \

\

\ Mouse over the variants to show the gene, variant, first author, year, and title.\

\

The data has been lifted from hg19 to hg38.

\ \

Data access

\

\ The raw data can be explored interactively with the Table Browser,\ for download, intersection or correlations with other tracks. To join this track with others\ based on the chromosome positions, use the Data Integrator.\ \

\ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ The file for this track is called avada.bb. Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool\ can also be used to obtain only features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi/avada.bb -chrom=chr21 -start=0 -end=100000000 stdout

\

\ \

For automated access, this track like all others, is also available via our\ API. However, for bulk processing in\ pipelines, downloading the data and/or using bigBed files as described above is\ usually faster.

\ \

Methods

\ \

\ The AVADA VCF file was reformatted at UCSC to the bigBed format.\ The program that performs the conversion is available on\ Github. The paper reference information was added from\ MEDLINE and is used Courtesy of the U.S. National Library of Medicine, according \ to its \ Terms and Conditions.

\ \

Credits

\

\ Thanks to Gill Bejerano and Johannes Birgmeier for making the data available.\

\ \

References

\

\ Johannes Birgmeier, Cole A. Deisseroth, Laura E. Hayward, Luisa M. T. Galhardo, Andrew P. Tierno, Karthik A. Jagadeesh, Peter D. Stenson, David N. Cooper, Jonathan A. Bernstein, Maximilian Haeussler, and Gill Bejerano.\ \ AVADA: Towards Automated Pathogenic Variant Evidence Retrieval Directly from the Full Text Literature. .\ Genetics in Medicine. 2019.\ PMID: 31467448\

\ phenDis 1 bigDataUrl /gbdb/hg19/bbi/avada.bb\ dataVersion release 1\ exonNumbers off\ longLabel Avada Variants extracted from full text publications\ mouseOverField _mouseOver\ noScoreFilter on\ parent varsInPubs pack\ shortLabel Avada Variants\ track avada\ type bigBed 9 +\ urls pmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" doi="https://doi.org/$$" ensId="http://grch37.ensembl.org/Homo_sapiens/Gene/Summary?g=$$" entrezs="https://www.ncbi.nlm.nih.gov/gene/$$" refSeq="https://www.ncbi.nlm.nih.gov/nuccore/$$"\ visibility dense\ bacEndPairs BAC End Pairs bed 6 + BAC End Pairs 0 100 0 0 0 80 80 80 0 0 0

Description

\

\ Bacterial artificial chromosomes (BACs) are a key part of many \ large-scale sequencing projects. A BAC typically consists of 25 - 350 kb of\ DNA. During the early phase of a sequencing project, it is common\ to sequence a single read (approximately 500 bases) off each end of\ a large number of BACs. Later on in the project, these BAC end reads\ can be mapped to the genome sequence.

\

\ This track shows these mappings\ in cases where both ends could be mapped. These BAC end pairs can\ be useful for validating the assembly over relatively long ranges. In some\ cases, the BACs are useful biological reagents. This track can also be\ used for determining which BAC contains a given gene, useful information\ for certain wet lab experiments.

\

\ A valid pair of BAC end sequences must be\ at least 25 kb but no more than 350 kb away from each other. \ The orientation of the first BAC end sequence must be "+" and\ the orientation of the second BAC end sequence must be "-".

\

\ The scoring scheme used for this annotation assigns 1000 to an alignment \ when the BAC end pair aligns to only one location in the genome (after \ filtering). When a BAC end pair or clone aligns to multiple locations, the \ score is calculated as 1500/(number of alignments).

\ \

Methods

\

\ BAC end sequences are placed on the assembled sequence using\ Jim Kent's blat program.

\ \

Credits

\

\ Additional information about the clone, including how it\ can be obtained, may be found at the \ NCBI Clone Registry. To view the registry entry for a \ specific clone, open the details page for the clone and click on its name at \ the top of the page.

\ \

\ Some BAC library clones (RPCI-11, and others) can be ordered from \ BACPAC Genomics, RIKEN, or from Thermofisher and possibly other companies.\

\ map 1 altColor 80,80,80\ color 0,0,0\ exonArrows off\ group map\ longLabel BAC End Pairs\ shortLabel BAC End Pairs\ track bacEndPairs\ type bed 6 +\ visibility hide\ wgEncodeOpenChromChipViewSigBo Base OS bed 3 Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin) 2 100 0 0 0 127 127 127 1 0 0 regulation 1 autoScale off\ longLabel Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)\ maxHeightPixels 100:32:16\ maxLimit 50\ minLimit 0\ parent wgEncodeOpenChromChip\ shortLabel Base OS\ track wgEncodeOpenChromChipViewSigBo\ view SIGBO\ viewLimits 0:50\ visibility full\ windowingFunction mean+whiskers\ wgEncodeOpenChromFaireViewSigBo Base Overlap Signal bed 3 Open Chromatin by FAIRE from ENCODE/OpenChrom(UNC Chapel Hill) 2 100 0 0 0 127 127 127 1 0 0 regulation 1 autoScale off\ longLabel Open Chromatin by FAIRE from ENCODE/OpenChrom(UNC Chapel Hill)\ maxHeightPixels 100:32:16\ maxLimit 50\ minLimit 0\ parent wgEncodeOpenChromFaire\ shortLabel Base Overlap Signal\ track wgEncodeOpenChromFaireViewSigBo\ view SIGBO\ viewLimits 0:50\ visibility full\ windowingFunction mean+whiskers\ bayesDel BayesDel bigWig BayesDel - deleteriousness meta-score 2 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ The "Prediction Scores" container track includes subtracks showing the results of prediction\ scores.

\ \

BayesDel

\

BayesDel is a deleteriousness meta-score for coding and non-coding variants, single nucleotide\ variants, and small insertion/deletions. The range of the score is from -1.29334 to 0.75731.\ The higher the score, the more likely the variant is pathogenic.

\ \

\ For gene discovery research, a universal cutoff value (0.0692655 with MaxAF, -0.0570105 without\ MaxAF) was obtained by maximizing sensitivity and specificity in classifying ClinVar variants;\ Version 1 (build date 2017-08-24).

\

\ For clinical variant classification, Bayesdel thresholds have been calculated for a variant to\ reach various levels of evidence; please refer to Pejaver et al. 2022 for general application\ of these scores in clinical applications.\

\ \

Display Conventions and Configuration

\ \

BayesDel

\

There are eight subtracks for the BayesDel track: four include pre-computed MaxAF-integrated BayesDel\ scores for missense variants, one for each base. The other four are of the same format, but scores\ are not MaxAF-integrated.

\ \

For SNVs, at each genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing the reference allele,\ (e.g. A to A) is always set to zero.

\ \

Note: There are cases in which a genomic position will have one value missing.\

\ \

When using this track, zoom in until you can see every base pair at the top of the display.\ Otherwise, there are several nucleotides per pixel under your mouse cursor and instead of an actual\ score, the tooltip text will show the average score of all nucleotides under the cursor. This is\ indicated by the prefix "~" in the mouseover.\

\ \

Data Access

\

BayesDel scores are available at the\ BayesDel website.\ \

Methods

\

BayesDel data was converted from the files provided on the\ BayesDel_170824 Database.\ The number 170824 is the date (2017-08-24) the scores were created. Both sets of BayesDel scores are\ available in this database, one integrated MaxAF (named BayesDel_170824_addAF) and one without\ (named BayesDel_170824_noAF). Data conversion was performed using\ \ custom Python scripts.\

\ \

Credits

\

Thanks to the BayesDel team for providing precomputed data, and to Tiana Pereira, Christopher\ Lee, Gerardo Perez, and Anna Benet-Pages of the Genome Browser team.

\ \

References

\

\ Feng BJ.\ \ PERCH: A Unified Framework for Disease Gene Prioritization.\ Hum Mutat. 2017 Mar;38(3):243-251.\ PMID: 27995669; PMC: PMC5299048\

\ \

\ Pejaver V, Byrne AB, Feng BJ, Pagel KA, Mooney SD, Karchin R, O'Donnell-Luria A, Harrison SM,\ Tavtigian SV, Greenblatt MS et al.\ \ Calibration of computational tools for missense variant pathogenicity classification and ClinGen\ recommendations for PP3/BP4 criteria.\ Am J Hum Genet. 2022 Dec 1;109(12):2163-2177.\ PMID: 36413997; PMC: PMC9748256\

\ \

\ Tian Y, Pesaran T, Chamberlin A, Fenwick RB, Li S, Gau CL, Chao EC, Lu HM, Black MH, Qian D.\ \ REVEL and BayesDel outperform other in silico meta-predictors for clinical variant\ classification.\ Sci Rep. 2019 Sep 4;9(1):12752.\ PMID: 31484976; PMC: PMC6726608\

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from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewSumSignal off\ shortLabel BJ Sd 1\ subGroups view=v5SumSignal cellType=t3BJ phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqBjSumSignalRep1\ type bigWig 1.000000 2370.000000\ wgEncodeMapabilityViewXR Blacklisted Regions bed 3 Mappability or Uniqueness of Reference Genome from ENCODE 0 100 0 0 0 127 127 127 0 0 0 map 1 longLabel Mappability or Uniqueness of Reference Genome from ENCODE\ noScoreFilter on\ parent wgEncodeMapability\ shortLabel Blacklisted Regions\ track wgEncodeMapabilityViewXR\ view XR\ visibility hide\ gnomADPextBladder Bladder bigWig 0 1 gnomAD pext Bladder 0 100 170 0 0 212 127 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Bladder.bw\ color 170,0,0\ longLabel gnomAD pext Bladder\ parent gnomadPext off\ shortLabel Bladder\ track gnomADPextBladder\ visibility hide\ gnomADPextBrain_Amygdala Brain-Amygdala bigWig 0 1 gnomAD pext Brain-Amygdala 0 100 238 238 0 246 246 127 0 0 0 varRep 0 bigDataUrl 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/gbdb/hg19/gnomAD/pext/Brain_Cortex.bw\ color 238,238,0\ longLabel gnomAD pext Brain-Cortex\ parent gnomadPext off\ shortLabel Brain-Cortex\ track gnomADPextBrain_Cortex\ visibility hide\ gnomADPextBrain_FrontalCortex_BA9_ Brain-Frontal Cortex (BA9) bigWig 0 1 gnomAD pext Brain-Frontal Cortex (BA9) 0 100 238 238 0 246 246 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Brain_FrontalCortex_BA9_.bw\ color 238,238,0\ longLabel gnomAD pext Brain-Frontal Cortex (BA9)\ parent gnomadPext off\ shortLabel Brain-Frontal Cortex (BA9)\ track gnomADPextBrain_FrontalCortex_BA9_\ visibility hide\ gnomADPextBrain_Hippocampus Brain-Hippocampus bigWig 0 1 gnomAD pext Brain-Hippocampus 0 100 238 238 0 246 246 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Brain_Hippocampus.bw\ color 238,238,0\ longLabel gnomAD pext Brain-Hippocampus\ parent gnomadPext off\ shortLabel Brain-Hippocampus\ track gnomADPextBrain_Hippocampus\ visibility hide\ gnomADPextBrain_Hypothalamus Brain-Hypothalamus bigWig 0 1 gnomAD pext Brain-Hypothalamus 0 100 238 238 0 246 246 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Brain_Hypothalamus.bw\ color 238,238,0\ longLabel gnomAD pext Brain-Hypothalamus\ parent gnomadPext off\ shortLabel Brain-Hypothalamus\ track gnomADPextBrain_Hypothalamus\ visibility hide\ gnomADPextBrain_Nucleusaccumbens_basalganglia_ Brain-Nucleus Accumbens (basal ganglia) bigWig 0 1 gnomAD pext Brain-Nucleus Accumbens (basal ganglia) 0 100 238 238 0 246 246 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Brain_Nucleusaccumbens_basalganglia_.bw\ color 238,238,0\ longLabel gnomAD pext Brain-Nucleus Accumbens (basal ganglia)\ parent gnomadPext off\ shortLabel Brain-Nucleus Accumbens (basal ganglia)\ track gnomADPextBrain_Nucleusaccumbens_basalganglia_\ visibility hide\ gnomADPextBrain_Putamen_basalganglia_ Brain-Putamen (basal ganglia) bigWig 0 1 gnomAD pext Brain-Putamen (basal ganglia) 0 100 238 238 0 246 246 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Brain_Putamen_basalganglia_.bw\ color 238,238,0\ longLabel gnomAD pext Brain-Putamen (basal ganglia)\ parent gnomadPext off\ shortLabel Brain-Putamen (basal ganglia)\ track gnomADPextBrain_Putamen_basalganglia_\ visibility hide\ gnomADPextBrain_Spinalcord_cervicalc_1_ Brain-Spinal Cord (cervicalc 1) bigWig 0 1 gnomAD pext Brain-Spinal Cord (cervicalc 1) 0 100 238 238 0 246 246 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Brain_Spinalcord_cervicalc_1_.bw\ color 238,238,0\ longLabel gnomAD pext Brain-Spinal Cord (cervicalc 1)\ parent gnomadPext off\ shortLabel Brain-Spinal Cord (cervicalc 1)\ track gnomADPextBrain_Spinalcord_cervicalc_1_\ visibility hide\ gnomADPextBrain_Substantianigra Brain-Substantia Nigra bigWig 0 1 gnomAD pext Brain-Substantia Nigra 0 100 238 238 0 246 246 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Brain_Substantianigra.bw\ color 238,238,0\ longLabel gnomAD pext Brain-Substantia Nigra\ parent gnomadPext off\ shortLabel Brain-Substantia Nigra\ track gnomADPextBrain_Substantianigra\ visibility hide\ gnomADPextBreast_MammaryTissue Breast-Mammary Tissue bigWig 0 1 gnomAD pext Breast-Mammary Tissue 0 100 51 204 204 153 229 229 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Breast_MammaryTissue.bw\ color 51,204,204\ longLabel gnomAD pext Breast-Mammary Tissue\ parent gnomadPext off\ shortLabel Breast-Mammary Tissue\ track gnomADPextBreast_MammaryTissue\ visibility hide\ wgEncodeBroadHmm Broad ChromHMM bed 9 . Chromatin State Segmentation by HMM from ENCODE/Broad 1 100 0 0 0 127 127 127 0 0 0

 Note: these data have been converted via liftOver from the Mar. 2006 (NCBI36/hg18) version of the track.

\ \

Description

\ \

This track displays a chromatin state segmentation for each of\ nine human cell types.\ A common set of states across the cell types were learned by\ computationally integrating ChIP-seq data for\ nine factors plus input\ \ using a Hidden Markov Model (HMM). In total, fifteen states were used to\ segment the genome, and these states were then grouped and colored to\ highlight predicted functional elements.\ \ \ \

Display Conventions and Configuration

\

This track is a composite track that contains multiple subtracks. Each subtrack represents data\ for a different cell type and displays individually on the browser. Instructions for configuring tracks\ with multiple subtracks are\ here.\ The fifteen states of the HMM, their associated segment color, and the\ candidate annotations are as follows:\

    \
  • State 1 -  Bright Red  - Active Promoter\
  • State 2 -  Light Red  -Weak Promoter\
  • State 3 -  Purple  - Inactive/poised Promoter\
  • State 4 -  Orange  - Strong enhancer\
  • State 5 -  Orange  - Strong enhancer\
  • State 6 -  Yellow  - Weak/poised enhancer\
  • State 7 -  Yellow  - Weak/poised enhancer\
  • State 8 -  Blue  - Insulator\
  • State 9 -  Dark Green  - Transcriptional transition\
  • State 10 -  Dark Green  - Transcriptional elongation\
  • State 11 -  Light Green  - Weak transcribed\
  • State 12 -  Gray  - Polycomb-repressed\
  • State 13 -  Light Gray  - Heterochromatin; low signal\
  • State 14 -  Light Gray  - Repetitive/Copy Number Variation\
  • State 15 -  Light Gray  - Repetitive/Copy Number Variation\
\

Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

\ \

Methods

\

ChIP-seq data from the Broad Histone\ track was used to generate this track. Data for\ nine factors plus input\ and nine cell types\ was binarized separately at a 200 base pair resolution based on a Poisson\ background model. The chromatin states were learned from this binarized data\ using a multivariate Hidden Markov Model (HMM) that explicitly models the\ combinatorial patterns of observed modifications (Ernst and Kellis, 2010).\ To learn a common set of states across the nine cell types, first the genomes were concatenated\ across the cell types. For each of the nine cell types, each 200 base pair interval\ was then assigned to its most likely state under the model. Detailed information about the model\ parameters and state enrichments can be found in (Ernst et al, accepted).\ \

Release Notes

\

\ This is release 1 (Jun 2011) of this track. It was lifted over from the\ NCBI36/hg18 version of the track, and is therefore based on the NCBI36/hg18\ release of the Broad Histone\ track. It is anticipated that the HMM methods will be run on the newer\ datasets in the GRCh37/hg19 version of the\ Broad Histone track, and, once that\ happens, the new data will replace this liftOver.\ \

Credits

\ \

The ChIP-seq data were generated at the\ \ Broad Institute and in the\ \ Bradley E. Bernstein lab at the Massachusetts General Hospital/Harvard Medical School,\ and the chromatin state segmentation was produced in\ \ Manolis Kellis's Computational Biology group at the Massachusetts Institute of Technology.\ Contact: Jason Ernst.\ \

\

Data generation and analysis was supported by funds from the NHGRI (ENCODE),\ the Burroughs Wellcome Fund, Howard Hughes Medical Institute, NSF, Sloan\ Foundation, Massachusetts General Hospital and the Broad Institute.\

\ \

References

\ \

\ Ernst J, Kellis M.\ \ Discovery and characterization of chromatin states for systematic annotation of the human genome.\ Nat Biotechnol. 2010 Aug;28(8):817-25.\

\ \

\ Ernst J, Kheradpour P, Mikkelsen TS, Shoresh N, Ward LD, Epstein CB, Zhang X, Wang L, Issner R, Coyne M et al.\ \ Mapping and analysis of chromatin state dynamics in nine human cell types.\ Nature. 2011 May 5;473(7345):43-9.\

\ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column on the track configuration page and\ the download page. The full data release policy for ENCODE is available\ here.

\ \

There is no restriction on the use of segmentation data.\ regulation 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell\ dimensions dimensionX=cellType\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line dccAccession=UCSC_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ filterBy name:State=1_Active_Promoter,2_Weak_Promoter,3_Poised_Promoter,4_Strong_Enhancer,5_Strong_Enhancer,6_Weak_Enhancer,7_Weak_Enhancer,8_Insulator,9_Txn_Transition,10_Txn_Elongation,11_Weak_Txn,12_Repressed,13_Heterochrom/lo,14_Repetitive/CNV,15_Repetitive/CNV\ group regulation\ itemRgb on\ longLabel Chromatin State Segmentation by HMM from ENCODE/Broad\ noScoreFilter .\ origAssembly hg18\ priority 0\ shortLabel Broad ChromHMM\ sortOrder cellType=+\ subGroup1 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t3HMEC=HMEC t3HSMM=HSMM t3NHEK=NHEK t3NHLF=NHLF\ superTrack wgEncodeHistoneSuper dense\ track wgEncodeBroadHmm\ type bed 9 .\ wgEncodeBroadHistone Broad Histone bed 3 Histone Modifications by ChIP-seq from ENCODE/Broad Institute 1 100 0 0 0 127 127 127 1 0 0

Description

\

This track displays maps of chromatin state generated by the Broad/MGH\ ENCODE group using ChIP-seq. Chemical modifications (methylation, acetylation)\ to the histone proteins present in chromatin influence gene expression\ by changing how accessible the chromatin is to transcription.\

\ \

The ChIP-seq method involves first using formaldehyde to cross-link histones\ and other DNA-associated proteins to genomic DNA within cells. The cross-linked\ chromatin is subsequently extracted, mechanically sheared, and\ immunoprecipitated using specific antibodies. After reversal of cross-links,\ the immunoprecipitated DNA is sequenced and mapped to the human reference\ genome. The relative enrichment of each antibody-target (epitope) across the\ genome is inferred from the density of mapped fragments.\ \ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains multiple data types\ (views). For each view, there are multiple subtracks that\ display individually on the browser. Instructions for configuring multi-view\ tracks are here.\ ENCODE tracks typically contain one or more of the following views:\

\
Peaks
Regions of statistically significant signal\ enrichment. The score associated with each enriched interval is the mean\ signal value across the interval. (Note that a broad region with moderate\ enrichment may deviate from the background more significantly than a short\ region with high signal.)\
\
Signal
Density graph (wiggle) of signal enrichment.\ At each base-pair position, the density is calculated as the number of sequenced\ tags overlapping a 25 bp window centered at that position.
\
\

\

Peaks and signals displayed in this track are the results of pooled replicates. The raw\ sequence and alignment files for each replicate are available for\ download.\

\

Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

\ \

Methods

\

ChIP-seq: Cells were grown according to the approved\ ENCODE cell culture protocols.\ Cells were fixed in 1% formaldehyde and resuspended in lysis buffer. Chromatin\ was sheared to 200-700 bp using a Diagenode Bioruptor. Solubilized chromatin was\ immunoprecipitated with antibodies against each of the histone antibodies\ listed above. Antibody-chromatin complexes were pulled down using protein\ A-sepharose (or anti-IgM-conjugated agarose for RNA polymerase II), washed and\ then eluted. After cross-link reversal and proteinase K treatment,\ immunoprecipitated DNA was extracted with phenol-chloroform, ethanol\ precipitated, treated with RNAse and purified. A quantity of 1-10 ng of DNA was\ end-repaired, adapter-ligated and sequenced by Illumina Genome Analyzers as\ recommended by the manufacturer.

\ \

Alignment: Sequence reads from each IP experiment were aligned to the\ human reference genome (GRCh37/hg19) using\ MAQ\ with default parameters, except '-C 11' and\ '-H output_file' were added. These options output up to 11 additional best matches\ for each read (if any are found) to a file. This information was used to filter\ out any read that had more than 10 best matches on the genome. Note that it is\ likely that instances where multiple reads align to the same position and with\ the same orientation are due to enhanced PCR amplification of a single DNA\ fragment. No attempt has been made, however, to remove such artifacts from the\ data, following ENCODE practices.

\ \

Signal: Fragment densities were computed by counting the number of\ reads overlapping each 25 bp bin along the genome. Densities were computed using\ igvtools count\ with default parameters (in particular, '-w 25' to set window size\ of 25 bp and '-f mean' to report the mean value across the window),\ except for '-e' which was set to extend the reads to 200 bp, and the\ .wig output was converted to bigWig using wigToBigWig\ from the UCSC Kent software package.

\ \

Peaks: Discrete intervals of ChIP-seq fragment enrichment were\ identified using Scripture,\ a scan statistics approach, under the assumption of uniform background signal.\ All data sets were processed with '-task chip', and with\ '-windows 100,200,500,1000,5000,10000,100000' (no mask file nor\ the '-trim' option have been used). The resulting called segments\ were then further filtered to remove intervals that were significantly enriched\ only because they contain smaller enriched intervals within them. This\ post-processing step has been implemented using Matlab. The use of the\ post-processing step allowed very large enriched intervals (of the order of\ Mbps for H3K27me3, for instance) to be detected, as well as much smaller\ intervals, without the need to tailor the parameters of Scripture\ based on prior expectations.\ \

Release Notes

\ \

\ This is Release 3 (Aug 2012). It contains 83 new experiments including 6 new cell lines and 25 new antibodies.\ Please note that an antibody previously labeled "Pol2 (b)" is, in fact, Covance antibody MMS-128P with the target POLR2A.\

\ \ \

Credits

\

The ChIP-seq data were generated at the\ Broad Institute and in the\ \ Bernstein lab at the Massachusetts General Hospital/Harvard Medical School.\   \ \

Data generation and analysis were supported by funds from the NHGRI, the\ Burroughs Wellcome Fund, Massachusetts General Hospital and the Broad Institute.\

\ \

\ Contact: Noam Shoresh\

\ \

References

\

\ Bernstein BE, Kamal M, Lindblad-Toh K, Bekiranov S, Bailey DK, Huebert DJ, McMahon S, Karlsson EK, Kulbokas EJ 3rd, Gingeras TR et al.\ \ Genomic maps and comparative analysis of histone modifications in human and mouse.\ Cell. 2005 Jan 28;120(2):169-81.\

\ \

\ Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J, Fry B, Meissner A, Wernig M, Plath K et al.\ \ A bivalent chromatin structure marks key developmental genes in embryonic stem cells.\ Cell. 2006 Apr 21;125(2):315-26.\

\ \

\ Ernst J, Kheradpour P, Mikkelsen TS, Shoresh N, Ward LD, Epstein CB, Zhang X, Wang L, Issner R, Coyne M et al.\ \ Mapping and analysis of chromatin state dynamics in nine human cell types.\ Nature. 2011 May 5;473(7345):43-9.\

\ \

\ Guttman M, Garber M, Levin JZ, Donaghey J, Robinson J, Adiconis X, Fan L, Koziol MJ, Gnirke A, Nusbaum C et al.\ \ Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs.\ Nat Biotechnol. 2010 May;28(5):503-10.\

\ \

\ Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP et al.\ \ Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.\ Nature. 2007 Aug 2;448(7153):553-60.\

\ \

Publications

\ \

\ Ram O, Goren A, Amit I, Shoresh N, Yosef N, Ernst J, Kellis M, Gymrek M, Issner R, Coyne M et al.\ \ Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells.\ Cell. 2011 Dec 23;147(7):1628-39.\

\ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until, above. The full data release policy for ENCODE is available\ here.

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Target treatment=Treatment view=View replicate=Rep dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ group regulation\ html wgEncodeBroadHistone.release3\ longLabel Histone Modifications by ChIP-seq from ENCODE/Broad Institute\ nextItemButton on\ noInherit on\ priority 0\ shortLabel Broad Histone\ sortOrder cellType=+ factor=+ treatment=+ view=+\ subGroup1 view Views Peaks=Peaks Signal=Signal\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2A549=A549 (Tier_2) t2BCELLSCD20=B_cells_CD20+ (Tier_2) t2BCELLSCD20RO01794=B_cells_CD20+_RO01794 (Tier_2) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2MONOCYTESCD14RO01746=Monocytes_CD14+_RO01746 (Tier_2) t3DND41=Dnd41 t3HMEC=HMEC t3HSMM=HSMM t3HSMMTUBE=HSMMtube t3NHA=NH-A t3NHDFAD=NHDF-Ad t3NHEK=NHEK t3NHLF=NHLF t3OSTEOBLASTS=Osteoblasts\ subGroup3 factor Antibody CBPSC369=CBP_(SC-369) CBX2=CBX2 CBX3SC101004=CBX3_(SC-101004) CBX8=CBX8 CHD1A301218A=CHD1_(A301-218A) CHD4MI2=CHD4_Mi2 CHD7A301223A1=CHD7_(A301-223A-1) CTCF=CTCF EZH239875=EZH2_(39875) H2AZ=H2A.Z H3K04ME1=H3K4me1 H3K04ME2=H3K4me2 H3K04ME3=H3K4me3 H3K09AC=H3K9ac H3K09me1=H3K9me1 H3K09ME3=H3K9me3 H3K27AC=H3K27ac H3K27ME3=H3K27me3 H3K36ME3=H3K36me3 H3K79ME2=H3K79me2 H4K20ME1=H4K20me1 HDAC1SC6298=HDAC1_(SC-6298) HDAC2A300705A=HDAC2_(A300-705A) HDAC6A301341A=HDAC6_(A301-341A) JARID1AAB26049=JARID1A_(ab26049) JMJD2AA300861A1=JMJD2A_(A300-861A-1) LSD1=LSD1 NCOR=NCoR NSD2AB75359=NSD2_(ab75359) P300=P300 P300KAT3B=P300_KAT3B PCAF=PCAF PHF8A301772A=PHF8_(A301-772A) PLU1=PLU1 POL2=Pol2_(MMS-128P) RBBP5A300109A=RBBP5_(A300-109A) REST=REST RNF2=RNF2 RNF2=RNF2 SAP3039731=SAP30_(39731) SETDB1=SETDB1 SIRT6=SIRT6 SUZ12051317=SUZ12_(05-1317) zCTRL=Input_Control\ subGroup4 treatment Treatment DEX100NM=DEX_100_nM ETOH02=EtOH_0.02% zNONE=None\ superTrack wgEncodeHistoneSuper dense\ track wgEncodeBroadHistone\ type bed 3\ useScore 0\ wgEncodeBuOrchid BU ORChID bed ORChID Predicted DNA Cleavage Sites from ENCODE/Boston Univ (Tullius lab) 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ This set of tracks displays the predicted hydroxyl radical cleavage\ intensity on naked DNA for each nucleotide in the genome.\ Because the hydroxyl radical cleavage intensity is proportional to the solvent\ accessible surface area of the deoxyribose hydrogen atoms \ (Balasubramanian et al., 1998), these tracks represent a structural \ profile of the DNA in the genome.

\ \

\ For additional details, please visit the Tullius lab website. \ \ \ \

Display Conventions and Configuration

\ \

\ These tracks may be configured in a variety of ways to highlight different \ aspects of the displayed data. The graphical configuration options \ are shown at the top of the track description page. For more information, \ click the \ Graph\ configuration help link.

\ \

\ In the full and pack display modes, positive intensity values are shown in \ red and negative intensity values are shown in tan.\ In the squish and dense display modes, intensity is represented in grayscale (the darker\ the shading, the higher the intensity).\ To show only selected subtracks, uncheck the boxes next to the tracks that \ you wish to hide.

\ \

Recommended Track Settings

\ \

\ Because the ORChID tracks are single nucleotide resolution and different viewing scales result \ in different levels of smoothing, the default data view scale parameter (auto-scale to data view) is not \ always ideal for visualizing the variability in the data. As a result, we recommend the following data \ view scale parameters for different scales:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Viewing scaleData view scalingVertical viewing range: minVertical viewing range: max
less than 10 Kbauto-scale to data viewNANA
10 Kbuse vertical viewing range setting00.75
100 Kbuse vertical viewing range setting0.10.5
1 Mb or largeruse vertical viewing range setting0.20.4
\ \

\ Note that these settings are only recommendations and may not be ideal for all viewing circumstances. \

\ \ \

Methods

\ \

\ Hydroxyl radical cleavage intensity predictions were performed using\ an in-house sliding tetramer window (STW) algorithm on the hg19 version of the human genome. This algorithm\ draws data from the ·OH Radical Cleavage Intensity Database\ (ORChID), which contains more than 150 experimentally determined cleavage\ patterns. The ORChID Version 1 predictions are performed on the + strand of the DNA sequence.\ These predictions are fairly accurate, with a Pearson\ coefficient of 0.88 between the predicted and experimentally\ determined cleavage intensities. \ \ For ORChID Version 2, two predictions are performed, one on the + strand and the other on \ the - strand, and then the average of the predicted cleavage intensity for nucleotides in close proximity across the minor groove is presented.\ For more details on the hydroxyl\ radical cleavage method, see below for reference (Greenbaum et al. 2007).

\ \ \

\ The hydroxyl radical cleavage pattern for any DNA sequence can be predicted, either using a web-based server or via a Perl script. For details please see the ORChID website.\

\ \ \

Verification

\ \

\ The STW algorithm has been cross-validated by removing each test\ sequence from the training set and performing a prediction. The\ mean correlation coefficient (between predicted and experimental\ cleavage patterns) from this study was 0.88.

\ \ \ \

Credits

\ \

\ These data were generated at Boston University\ and NHGRI.\

\ Contact:\ Tom Tullius\ \

\ These data are the result of the combined efforts of Bo Pang\ (now at MIT),\ Jason Greenbaum (now at The La Jolla Institute for Allergy and Immunology),\ Steve Parker and Elliott Margulies\ at The National Human Genome Research Institute,\ National Institutes of Health,\ and Eric Bishop and Tom Tullius at Boston University.

\ \ \ \

References

\ \

\ Balasubramanian B, Pogozelski WK, and Tullius TD. \ DNA strand breaking by the hydroxyl radical is governed by the \ accessible surface areas of the hydrogen atoms of the DNA backbone. \ Proc. Natl. Acad. Sci. USA. 1998 Aug 18;95(17):9738-43.

\ \

\ Greenbaum JA, Pang B, and Tullius TD.\ \ Construction of a genome-scale structural map at single-nucleotide resolution.\ Genome Res. 2007 Jun;17(6):947-53.\

\ \

\ Price MA, and Tullius TD.\ Using the Hydroxyl Radical to Probe DNA Structure.\ Meth. Enzymol. 1992;212:194-219.

\ \

\ Tullius TD. \ Probing DNA Structure with Hydroxyl Radicals.\ Curr Protoc Nucleic Acid Chem. 2002 Feb;Chapter 6:Unit 6.7. Review.

\ \ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior \ consent, submit publications that use an unpublished ENCODE dataset until \ nine months following the release of the dataset. This date is listed in \ the Restricted Until column, above. The full data release policy \ for ENCODE is available \ here.

\ map 1 compositeTrack on\ controlledVocabulary encode/cv.ra\ dragAndDrop subTracks\ fileSortOrder tableName=Version view=View dccAccession=UCSC_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until md5sum=md5sum\ group map\ longLabel ORChID Predicted DNA Cleavage Sites from ENCODE/Boston Univ (Tullius lab)\ maxWindowToQuery 10000000\ noInherit on\ priority 0\ shortLabel BU ORChID\ sortOrder view=+\ subGroup1 view Views Signal=Signal\ track wgEncodeBuOrchid\ type bed\ caddSuper CADD bed CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions 0 100 100 130 160 177 192 207 0 0 0

Description

\ \

This track collection shows Combined Annotation Dependent Depletion scores.\ CADD is a tool for scoring the deleteriousness of single nucleotide variants as\ well as insertion/deletion variants in the human genome.

\ \

\ Some mutation annotations\ tend to exploit a single information type (e.g., phastCons or phyloP for\ conservation) and/or are restricted in scope (e.g., to missense changes). Thus,\ a broadly applicable metric that objectively weights and integrates diverse\ information is needed. Combined Annotation Dependent Depletion (CADD) is a\ framework that integrates multiple annotations into one metric by contrasting\ variants that survived natural selection with simulated mutations.\

\ \

\ CADD scores strongly correlate with allelic diversity, pathogenicity of both\ coding and non-coding variants, experimentally measured regulatory effects,\ and also rank causal variants within individual genome sequences with a higher\ value than non-causal variants. \ Finally, CADD scores of complex trait-associated variants from genome-wide\ association studies (GWAS) are significantly higher than matched controls and\ correlate with study sample size, likely reflecting the increased accuracy of\ larger GWAS.\

\ \

\ A CADD score represents a ranking not a prediction, and no threshold is defined\ for a specific purpose. Higher scores are more likely to be deleterious: \ Scores are \ \ 

  10 * -log of the rank
\ \ so that variants with scores above 20 are \ predicted to be among the 1.0% most deleterious possible substitutions in \ the human genome. We recommend thinking carefully about what threshold is \ appropriate for your application.\

\ \

Display Conventions and Configuration

\

\ There are six subtracks of this track: four for single-nucleotide mutations,\ one for each base, showing all possible substitutions, \ one for insertions and one for deletions. All subtracks show the CADD Phred\ score on mouseover. Zooming in shows the exact score on mouseover, same\ basepair = score 0.0.

\

\ PHRED-scaled scores are normalized to all potential ~9 billion SNVs, and\ thereby provide an externally comparable unit for analysis. For example, a\ scaled score of 10 or greater indicates a raw score in the top 10% of all\ possible reference genome SNVs, and a score of 20 or greater indicates a raw\ score in the top 1%, regardless of the details of the annotation set, model\ parameters, etc.\

\

\ The four single-nucleotide mutation tracks have a default viewing range of\ score 10 to 50. As explained in the paragraph above, that results in\ slightly less than 10% of the data displayed. The \ deletion and insertion tracks have a default filter of 10-100, because they\ display discrete items and not graphical data.\

\ \

\ Single nucleotide variants (SNV): For SNVs, at every\ genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing \ the reference allele, e.g., A to A, is always set to zero.\

\

\ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and instead of an actual score, the tooltip text will show\ the average score of all nucleotides under the cursor. This is indicated by\ the prefix "~" in the mouseover. Averages of scores are not useful for any\ application of CADD.\

\ \

Insertions and deletions: Scores are also shown on mouseover for a\ set of insertions and deletions. On hg38, the set has been obtained from\ gnomAD3. On hg19, the set of indels has been obtained from various sources\ (gnomAD2, ExAC, 1000 Genomes, ESP). If your insertion or deleletion of interest\ is not in the track, you will need to use CADD's\ online scoring tool\ to obtain them.

\ \

Data access

\

\ CADD scores are freely available for all non-commercial applications from\ the CADD website.\ For commercial applications, see\ the license instructions there.\

\ \

\ The CADD data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ The files for this track are called a.bw, c.bw, g.bw, t.bw, ins.bb and del.bb. Individual\ regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\
\ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/cadd/a.bw stdout\
\ or\
\ bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/cadd/ins.bb stdout

\ \

Methods

\ \

\ Data were converted from the files provided on\ the CADD Downloads website,\ provided by the Kircher lab, using\ \ custom Python scripts, \ documented in our \ makeDoc files.\

\ \

Credits

\

\ Thanks to the CADD development team for providing precomputed data as simple tab-separated files.\

\ \

References

\

\ Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J.\ \ A general framework for estimating the relative pathogenicity of human genetic variants.\ Nat Genet. 2014 Mar;46(3):310-5.\ PMID: 24487276;\ PMC: PMC3992975\

\ \

\ Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M.\ \ CADD: predicting the deleteriousness of variants throughout the human genome.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894.\ PMID: 30371827;\ PMC: PMC6323892\

\ phenDis 1 color 100,130,160\ group phenDis\ longLabel CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions\ shortLabel CADD\ superTrack on hide\ track caddSuper\ type bed\ visibility hide\ cadd CADD bigWig CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores) 1 100 100 130 160 177 192 207 0 0 0

Description

\ \

This track collection shows Combined Annotation Dependent Depletion scores.\ CADD is a tool for scoring the deleteriousness of single nucleotide variants as\ well as insertion/deletion variants in the human genome.

\ \

\ Some mutation annotations\ tend to exploit a single information type (e.g., phastCons or phyloP for\ conservation) and/or are restricted in scope (e.g., to missense changes). Thus,\ a broadly applicable metric that objectively weights and integrates diverse\ information is needed. Combined Annotation Dependent Depletion (CADD) is a\ framework that integrates multiple annotations into one metric by contrasting\ variants that survived natural selection with simulated mutations.\

\ \

\ CADD scores strongly correlate with allelic diversity, pathogenicity of both\ coding and non-coding variants, experimentally measured regulatory effects,\ and also rank causal variants within individual genome sequences with a higher\ value than non-causal variants. \ Finally, CADD scores of complex trait-associated variants from genome-wide\ association studies (GWAS) are significantly higher than matched controls and\ correlate with study sample size, likely reflecting the increased accuracy of\ larger GWAS.\

\ \

\ A CADD score represents a ranking not a prediction, and no threshold is defined\ for a specific purpose. Higher scores are more likely to be deleterious: \ Scores are \ \ 

  10 * -log of the rank
\ \ so that variants with scores above 20 are \ predicted to be among the 1.0% most deleterious possible substitutions in \ the human genome. We recommend thinking carefully about what threshold is \ appropriate for your application.\

\ \

Display Conventions and Configuration

\

\ There are six subtracks of this track: four for single-nucleotide mutations,\ one for each base, showing all possible substitutions, \ one for insertions and one for deletions. All subtracks show the CADD Phred\ score on mouseover. Zooming in shows the exact score on mouseover, same\ basepair = score 0.0.

\

\ PHRED-scaled scores are normalized to all potential ~9 billion SNVs, and\ thereby provide an externally comparable unit for analysis. For example, a\ scaled score of 10 or greater indicates a raw score in the top 10% of all\ possible reference genome SNVs, and a score of 20 or greater indicates a raw\ score in the top 1%, regardless of the details of the annotation set, model\ parameters, etc.\

\

\ The four single-nucleotide mutation tracks have a default viewing range of\ score 10 to 50. As explained in the paragraph above, that results in\ slightly less than 10% of the data displayed. The \ deletion and insertion tracks have a default filter of 10-100, because they\ display discrete items and not graphical data.\

\ \

\ Single nucleotide variants (SNV): For SNVs, at every\ genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing \ the reference allele, e.g., A to A, is always set to zero.\

\

\ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and instead of an actual score, the tooltip text will show\ the average score of all nucleotides under the cursor. This is indicated by\ the prefix "~" in the mouseover. Averages of scores are not useful for any\ application of CADD.\

\ \

Insertions and deletions: Scores are also shown on mouseover for a\ set of insertions and deletions. On hg38, the set has been obtained from\ gnomAD3. On hg19, the set of indels has been obtained from various sources\ (gnomAD2, ExAC, 1000 Genomes, ESP). If your insertion or deleletion of interest\ is not in the track, you will need to use CADD's\ online scoring tool\ to obtain them.

\ \

Data access

\

\ CADD scores are freely available for all non-commercial applications from\ the CADD website.\ For commercial applications, see\ the license instructions there.\

\ \

\ The CADD data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ The files for this track are called a.bw, c.bw, g.bw, t.bw, ins.bb and del.bb. Individual\ regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\
\ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/cadd/a.bw stdout\
\ or\
\ bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/cadd/ins.bb stdout

\ \

Methods

\ \

\ Data were converted from the files provided on\ the CADD Downloads website,\ provided by the Kircher lab, using\ \ custom Python scripts, \ documented in our \ makeDoc files.\

\ \

Credits

\

\ Thanks to the CADD development team for providing precomputed data as simple tab-separated files.\

\ \

References

\

\ Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J.\ \ A general framework for estimating the relative pathogenicity of human genetic variants.\ Nat Genet. 2014 Mar;46(3):310-5.\ PMID: 24487276;\ PMC: PMC3992975\

\ \

\ Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M.\ \ CADD: predicting the deleteriousness of variants throughout the human genome.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894.\ PMID: 30371827;\ PMC: PMC6323892\

\ phenDis 0 color 100,130,160\ compositeTrack on\ group phenDis\ html caddSuper\ longLabel CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores)\ maxWindowToDraw 10000000\ mouseOverFunction noAverage\ parent caddSuper\ shortLabel CADD\ track cadd\ type bigWig\ visibility dense\ wgEncodeCaltechRnaSeq Caltech RNA-seq bed 3 RNA-seq from ENCODE/Caltech 1 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ This track was produced as part of the ENCODE Project. RNA-seq is a method for\ mapping and quantifying the transcriptome of any organism that has a genomic DNA\ sequence assembly. RNA-seq was performed by reverse-transcribing an RNA sample into\ cDNA, followed by high-throughput DNA sequencing, which was done on an Illumina\ Genome Analyzer (GAI or GAIIx) (Mortazavi et al., 2008). The transcriptome\ measurements shown on these tracks were performed on\ polyA selected RNA from\ total cellular RNA using two different protocols:\ one that preserves information about which strand the read is coming from and one\ that does not. Due to the specifics of the enzymology of library construction, gene\ and transcript quantification is more accurate based on the non-strand-specific\ protocol, while the strand-specific protocol is useful for assigning strandedness, but\ in general less reliable for quantification.\

\ \

Non-strand-specific Protocol (deep "reference" transcriptome measurements, 2x75 bp reads)

\ \

\ PolyA-selected RNA was fragmented by magnesium-catalyzed hydrolysis, converted into\ cDNA by random priming and then amplified. Data were produced in two formats: single\ reads, each of which came from one end of a cDNA molecule, and paired-end reads, which\ were obtained as pairs from both ends of cDNAs. This RNA-seq protocol does not specify\ the coding strand. As a result, there is ambiguity at loci where both strands are\ transcribed. The "randomly primed" reverse transcription is, apparently, not\ fully random. This is inferred from a sequence bias in the first residues of the read\ population, and this likely contributes to observed unevenness in sequence coverage\ across transcripts.\

\ \

Strand-specific Protocol (1x75 bp reads)

\ \

\ PolyA-selected RNA was fragmented by magnesium-catalyzed hydrolysis. A set of 3' and 5'\ adapters were ligated to the 3' and 5' ends of the fragments, respectively. The resulting\ RNA molecules were converted to cDNA and amplified. This RNA-seq protocol does specify the\ coding strand as each read is in the same 5'-3' orientation as the original RNA strand. As a\ result, loci where both strands are transcribed can be disambiguated. However, RNA ligation is\ an inherently biased process and as a result, greater unevenness in sequence coverage across\ transcripts is observed compared to the non-strand-specific data, and quantification is less\ accurate.\

\ \

Data Analysis

\ \

\ Reads were aligned to the hg19 human reference genome using TopHat (Trapnell et al.,\ 2009), a program specifically designed to align RNA-seq reads and discover splice junctions de\ novo. Cufflinks (Trapnell et al., 2010), a de novo transcript assembly and quantification\ software package, was run on the TopHat alignments to discover and quantify novel transcripts and\ to obtain transcript expression estimates based on the GENCODE annotation. All sequence files,\ alignments, gene and transcript models and expression estimates files are available for download.\

\ \

Display Conventions and Configuration

\ \

\ This track is a multi-view composite track that contains multiple data types (views). For each\ view, there are multiple subtracks that display individually on the browser. Instructions for\ configuring multi-view tracks are here.\ The following views are in this track:\

\ \
\
Alignments
\
The Alignments view shows reads aligned to the genome. Alignments are colored by cell type.\ The tags used in this file are: NH XS CP NM CC. The 'XS' custom tag indicates the sense/anti-sense\ of the strand. See the Bowtie Manual (Langmead et al., 2009) for more information about the\ SAM Bowtie output (including other tags) and the\ SAM Format Specification\ for more information on the SAM/BAM file format.
\
\ \

For Stranded Data (1x75)

\ \
\
Plus Raw Signal (only for stranded data)
\
Density graph (wiggle) of signal enrichment based on a normalized aligned read density (Read\ Per Million, RPM) for reads aligning to the forward strand.
\
Minus Raw Signal (only for stranded data)
\
Density graph (wiggle) of signal enrichment based on a normalized aligned read density (Read\ Per Million, RPM) for reads aligning to the reverse strand. Minus strand score is multiplied by -1\ for display purposes so that data can be viewed around an axis.
\
\ \

For Paired-End Non-Stranded Data (2x75)

\ \
\
Raw Signal (only for paired-end data)
\
Density graph (wiggle) of signal enrichment based on a normalized aligned read density (Read\ Per Million, RPM). The RPM measure assists in visualizing the relative amount of a given transcript\ across multiple samples. A separate track for the forward (plus) and reverse (minus) strands are\ provided for strand-specific data.
\
Splice Sites
\
Subset of aligned reads that crosses splice junctions.
\
\ \

\ Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.\

\ \

Methods

\ \

Experimental Procedures

\ \

\ Cells were grown according to the approved ENCODE cell culture protocols except for H1-hESC for which frozen cell pellets\ were purchased from Cellular Dynamics. Cells were lysed in RLT buffer (Qiagen RNeasy kit) and\ processed on RNeasy midi columns according to the manufacturer's protocol, with the inclusion of\ the "on-column" DNase digestion step to remove residual genomic DNA.\

\ \

\ A quantity of 75 µg of total RNA was selected twice with oligo-dT beads (Dynal) according\ to the manufacturer's protocol to isolate mRNA from each of the preparations. For 2x75 bp non-stranded\ RNA-seq, 100 ng of mRNA was then processed according to the protocol in Mortazavi et al.\ (2008), and prepared for sequencing on the Genome Analyzer flow cell according to the protocol for the\ ChIP-seq DNA genomic DNA kit (Illumina). The majority of paired-end libraries were size-selected around\ 200 bp (fragment length) with the exception of a few additional replicates that were size-selected at 400\ bp with the specific intent to investigate the effect of fragment length on results. Strand-specific RNA-seq\ libraries were prepared from 100 ng of mRNA from the same preparation following\ Illumina's Strand-Specific RNA-seq protocol.\

\ \

\ Libraries were sequenced with an Illumina Genome Analyzer I or an Illumina Genome Analyzer IIx according\ to the manufacturer's recommendations. Reads of 75 bp length were obtained, single-end for directional,\ strand-specific libraries (1x75D) and paired-end for non-strand-specific libraries (2x75).\

\ \

Data Processing and Analysis

\ \

\ Reads were mapped to the reference human genome (version hg19), with or without the Y chromosome,\ depending on the sex of the cell line, and without the random chromosomes and haplotypes in all cases,\ using TopHat (version 1.0.14). TopHat was\ used with default settings with the exception of specifying an empirically determined mean inner-mate\ distance. After mapping reads to the genome and identifying splice junctions, the data were further\ analyzed using the transcript assembly and quantification software\ Cufflinks (version 0.9.3) using the sequence\ bias detection and correction option. Cufflinks was used in two modes: 1) expression for genes and\ individual transcripts was quantified based on the GENCODE annotation, for both versions v3c and v4 of\ GENCODE GRCh37; 2) Cufflinks was run in de novo transcript assembly and quantification mode to\ obtain candidate novel transcript and gene models and expression estimates for them.\

\ \

Downloadable Files

\ \

\ The following files can be found on the\ downloads page:\

\ \
\
.fastq - Raw sequence files in fastq format with phred33 quality scores.
\
Junctions.bedRnaElements - A BED file containing TopHat-defined splice junctions.
\
TranscriptDeNovo.gtf - A GTF file containing transcript models and expression estimates in\ FPKM (Fragments Per Kilobase per Million reads) produced by Cufflinks in de novo mode.
\
TranscriptGencV3c.gtf - Expression level estimates at the transcript level for the GENCODE\ GRCh37.v3c annotation in GTF format.
\
GenesDeNovo.gtf - Expression estimates for genes defined by Cufflinks in de novo mode in\ GTF format.
\
GeneGencV3c.gtf - Expression level estimates at the gene level for the GENCODE GRCh37.v3c\ annotation in GTF format.
\
ExonGencV3c.gtf - Expression level estimates for GENCODE GRCh37.v3c exons in GTF format\ derived by summing the expression levels in FPKM for all transcripts containing a given exon.
\
TSS.gtf - Expression level estimates for GENCODE GRCh37.v3c transcription start sites (TSS) in\ GTF format derived by summing the expression levels in FPKM for all transcripts originating from a given TSS.
\
\ \

Verification

\ \
    \
  • Known exon maps as displayed on the genome browser are confirmed by the alignment of sequence reads.
    • \
  • Known spliced exons are detected at the expected frequency for transcripts of given abundance.
    • \
  • Linear range detection of spiked-in RNA transcripts from Arabidopsis and phage lambda over 5\ orders of magnitude.
    • \
  • Endpoint RT-PCR confirms presence of selected 3' UTR extensions.
    • \
  • Correlation to published microarray data r = 0.62.
    • \
\ \

Release Notes

\ \

\ This is release 4 (August 2012). Fastq files for GM12892, GM12891 and K562 (R1x75) were replaced\ after errors were found in the GEO submission process.\

\ \

Credits

\ \

Wold Group: Ali Mortazavi, Brian Williams, Georgi Marinov, Diane Trout, Brandon King, Ken McCue, Lorian Schaeffer.

\

Myers Group: Norma Neff, Florencia Pauli, Fan Zhang, Tim Reddy, Rami Rauch, Chris Partridge.

\

Illumina gene expression group: Gary Schroth, Shujun Luo, Eric Vermaas.

\

TopHat/Cufflinks development: Cole Trapnell, Lior Pachter, Steven Salzberg.

\ \

\ Contacts:\ \ Georgi Marinov (data coordination/informatics/experimental),\ \ \ \ Diane Trout (informatics) and\ \ \ Brian Williams (experimental).\ \

\ \

References

\ \

\ Langmead B, Trapnell C, Pop M, Salzberg SL.\ \ Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.\ Genome Biol. 2009;10(3):R25.\

\ \

\ Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B.\ \ Mapping and quantifying mammalian transcriptomes by RNA-Seq.\ Nat Methods. 2008 Jul;5(7):621-8.\

\ \

\ Trapnell C, Pachter L, Salzberg SL.\ \ TopHat: discovering splice junctions with RNA-Seq.\ Bioinformatics. 2009 May 1;25(9):1105-11.\

\ \

\ Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L.\ \ Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.\ Nat Biotechnol. 2010 May;28(5):511-5.\

\ \

Data Release Policy

\ \

\ Data users may freely use ENCODE data, but may not, without prior consent, submit publications\ that use an unpublished ENCODE dataset until nine months following the release of the dataset.\ This date is listed in the Restricted Until column, above. The full data release policy\ for ENCODE is available here.\

\ expression 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell readType=readType insertLength=insertLength treatment=Treatment\ dimensionAchecked rep1,rep2\ dimensions dimensionX=readType dimensionY=cellType dimensionA=rep\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line readType=Read
Type insertLength=Insert
Length treatment=Treatment view=View replicate=Rep labExpId=Lab_Exp_ID dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ group expression\ html wgEncodeCaltechRnaSeq.release4\ longLabel RNA-seq from ENCODE/Caltech\ noInherit on\ priority 0\ shortLabel Caltech RNA-seq\ sortOrder cellType=+ readType=+ view=+ rep=+\ subGroup1 view Views Signal=Raw_Signal PlusSignal=Plus_Raw_Signal MinusSignal=Minus_Raw_Signal Splices=Splice_Sites Aligns=Alignments\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2LHCNM2=LHCN-M2_Myoblast (Tier_2) t2LHCNM2D=LHCN-M2_Myocyte_7_d (Tier_2) t2MCF7=MCF-7 (Tier_2) t3GM12891=GM12891 t3GM12892=GM12892 t3HCT116=HCT-116 t3HSMM=HSMM t3NHEK=NHEK t3NHLF=NHLF\ subGroup3 readType Read_Type a1R2x75=Paired_75_nt_(200_bp) a1R2x75400=Paired_75_nt_(400_bp) r1x75D=Single_Strand-Specific_75_nt\ subGroup4 insertLength Insert_Length il200=200 il400=400 ilNa=NA\ subGroup5 rep Replicate rep1=1 rep2=2 rep3=3 rep4=4\ subGroup6 treatment Treatment aNone=None bDIFF7D=DIFF_7d\ superTrack wgEncodeRnaSeqSuper dense\ track wgEncodeCaltechRnaSeq\ type bed 3\ ntOoaHaplo Cand. Gene Flow bed 9 + Candidate Regions for Gene Flow from Neandertal to Non-African Modern Humans 0 100 0 0 0 127 127 127 0 0 10 chr1,chr4,chr5,chr6,chr9,chr10,chr15,chr17,chr20,chr22,

Description

\

\ This track shows 13 regions of the human genome in which there is\ considerably more haplotype diversity among non-African genomes than\ within African genomes. A prediction of Neandertal-to-modern human\ gene flow is that these deeply divergent haplotypes which exist only in\ non-African populations entered the human gene pool from Neandertals.\ Of the 12 candidate gene flow regions with tag SNP data, there are 10\ regions in which Neandertals match the deep haplotype clade unique to\ non-Africans (out of Africa, OOA) instead of the cosmopolitan\ haplotype clade shared by Africans and non-Africans (cosmopolitan,\ COS).\

\

\ The table below was copied from Table 5, "Non-African haplotypes \ match Neandertal at an unexpected rate", from Green et al.:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
RegionGenomic SizeSTAverage
Frequency
in OOA		AMDMANDNQualitative
Assessment
chr1:168,110,001-168,220,000110,0002.96.3%51010OOA
chr1:223,760,001-223,910,000150,0002.86.3%1400OOA
chr4:171,180,001-171,280,000100,0001.95.2%1200OOA
chr5:28,950,001-29,070,000120,0003.83.1%161660OOA
chr6:66,160,001-66,260,000100,0005.728.1%6600OOA
chr9:32,940,001-33,040,000100,0002.84.2%71400OOA
chr10:4,820,001-4,920,000100,0002.69.4%9500OOA
chr10:38,000,001-38,160,000160,0003.58.3%5920OOA
chr10:69,630,001-69,740,000110,0004.219.8%2201OOA
chr15:45,250,001-45,350,000100,0002.51.1%5610OOA
chr17:35,500,001-35,600,000100,0002.9(no tags)n/an/an/an/an/a
chr20:20,030,001-20,140,000110,0005.164.6%00105COS
chr22:30,690,001-30,820,000130,0003.54.2%0252COS
\
\ ST = estimated ratio of OOA/African gene tree depth.
\ Average Frequency in OOA = average (across tag SNPs in the region) of the population frequency in the 48 OOA individuals of the OOA-only allele for each tag SNP.
\ AM = Neandertal has ancestral allele and matches OOA-specific clade.
\ DM = Neandertal has derived allele and matches OOA-specific clade.
\ AN = Neandertal has ancestral allele and does not match OOA-specific clade.
\ DN = Neandertal has derived allele and does not match OOA-specific clade.\

\ \

Display Conventions and Configuration

\

\ A region is colored green if its qualitative assessment is OOA, blue\ if COS, and gray if unknown (no tag SNPs in region).\

\ \

Methods

\

\ Green et al. used 1,263,750 Perlegen Class A SNPs, identified\ in 71 individuals of diverse ancestry (see Hinds et al.), to\ identify 13 candidate gene flow regions (Supplemental Online Materials\ Text 17).\ 24 individuals of European ancestry and 24 individuals of Han Chinese\ ancestry were used to represent the non-African population, and the\ remaining 23 individuals, of African American ancestry, were used to\ represent the African population.\

\

\ From the 1,263,750 Perlegen Class A SNPs, they identified 166 tag\ SNPs that separate (see below) 12 of the haplotype clades in\ non-Africans (OOA) from the cosmopolitan haplotype clades shared between\ Africans and non-Africans (COS) and for which they had data from the\ Neandertals. Of the 13 regions, one had no tag SNPs so could not be\ assessed, two were COS, and 10 were OOA (see final column Table 1).\

\

\ Overall, the Neandertals match the deep clade unique to non-Africans\ (OOA) at 133 of the 166 tag SNPs. They assessed the rate at which\ Neandertal matches each of these clades by further subdividing the 133\ tag SNPs based on their ancestral or derived status in\ Neandertal and whether they matched the OOA-specific clade or not.\ Candidate regions were qualitatively assessed to be OOA matches for \ Neandertal when the proportion of tag SNPs matching the OOA-specific \ clade is much more than 50%.\

\ \

Credits

\

\ This track was produced at UCSC using data generated by\ Ed Green.\

\ \

References

\

\ Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH\ et al.\ \ A draft sequence of the Neandertal genome.\ Science. 2010 May 7;328(5979):710-22.\ PMID: 20448178\

\ \

\ Hinds DA, Stuve LL, Nilsen GB, Halperin E, Eskin E, Ballinger DG, Frazer KA, Cox DR.\ \ Whole-genome patterns of common DNA variation in three human populations.\ Science. 2005 Feb 18;307(5712):1072-9.\ PMID: 15718463\

\ neandertal 1 chromosomes chr1,chr4,chr5,chr6,chr9,chr10,chr15,chr17,chr20,chr22\ exonArrows off\ group neandertal\ itemRgb on\ longLabel Candidate Regions for Gene Flow from Neandertal to Non-African Modern Humans\ noScoreFilter .\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel Cand. Gene Flow\ track ntOoaHaplo\ type bed 9 +\ visibility hide\ ccdsGene CCDS genePred Consensus CDS 0 100 12 120 12 133 187 133 0 0 0

Description

\

\ This track shows human genome high-confidence gene annotations from the\ Consensus \ Coding Sequence (CCDS) project. This project is a collaborative effort \ to identify a core set of \ human protein-coding regions that are consistently annotated and of high \ quality. The long-term goal is to support convergence towards a standard set \ of gene annotations on the human genome.\

\

Collaborators include:\

\ \

\ For more information on the different gene tracks, see our Genes FAQ.

\ \

Methods

\

\ CDS annotations of the human genome were obtained from two sources:\ NCBI \ RefSeq and a union of the gene annotations from \ Ensembl and \ Vega, collectively known \ as Hinxton.

\

\ Genes with identical CDS genomic coordinates in both sets become CCDS \ candidates. The genes undergo a quality evaluation, which must be approved by \ all collaborators. The following criteria are currently used to assess each\ gene: \

    \
  • an initiating ATG (Exception: a non-ATG translation start codon is \ annotated if it has sufficient experimental support), a valid stop codon, and \ no in-frame stop codons (Exception: selenoproteins, which contain a TGA codon \ that is known to be translated to a selenocysteine instead of functioning as \ a stop codon) \
  • ability to be translated from the genome reference sequence without frameshifts\
  • recognizable splicing sites\
  • no intersection with putative pseudogene predictions\
  • supporting transcripts and protein homology\
  • conservation evidence with other species\

\

\ A unique CCDS ID is assigned to the CCDS, which links together all gene \ annotations with the same CDS. CCDS gene annotations are under continuous\ review, with periodic updates to this track.\

\ \

Credits

\

\ This track was produced at UCSC from data downloaded from the\ CCDS project \ web site.\

\ \

References

\

\ Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T et\ al.\ The Ensembl genome database project.\ Nucleic Acids Res. 2002 Jan 1;30(1):38-41.\ PMID: 11752248; PMC: PMC99161\

\

\ Pruitt KD, Harrow J, Harte RA, Wallin C, Diekhans M, Maglott DR, Searle S, Farrell CM, Loveland JE,\ Ruef BJ et al.\ \ The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the\ human and mouse genomes.\ Genome Res. 2009 Jul;19(7):1316-23.\ PMID: 19498102; PMC: PMC2704439\

\

\ Pruitt KD, Tatusova T, Maglott DR.\ \ NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts\ and proteins.\ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.\ PMID: 15608248; PMC: PMC539979\

\ genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 12,120,12\ group genes\ longLabel Consensus CDS\ shortLabel CCDS\ track ccdsGene\ type genePred\ visibility hide\ eioJcviNAS CD34 DnaseI bed 3 . Eur. Inst. Oncology/J. C. Venter Inst. Nuclease Accessible Sites 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ Genes in metazoa are controlled by a complex array of cis-regulatory elements \ that include core and distal promoters, enhancers, insulators, silencers, etc. \ (Levine and Tjian, 2003). In living cells, functionally active cis-regulatory \ elements bear a unifying feature, which is a chromatin-based epigenetic \ signature known as nuclease hypersensitivity (Elgin, 1988; Gross and Garrard, \ 1988; Wolffe, 1998). This track presents the results of a collaboration \ between J. Craig Venter Institute (JCVI, Rockville MD) and the European \ Institute of Oncology (Milan, Italy) to isolate nuclease accessible sites \ (NAS) from primary human CD34+ hematopoietic stem and progenitor cells, and \ from CD34- cells, maturating myeloid cells generated by in vitro \ differentiation of CD34+ cells (Gargiulo et al., submitted). This effort made \ use of a method (originally developed at Sangamo BioSciences, Richmond, CA) to \ isolate such NAS from living cells using restriction enzymes (RE), leading to \ minimal, if any, contamination from bulk DNA. High throughput 454 sequencing \ was then used to generate NAS libraries in CD34+ and CD34- cells: this \ technology has been named "NA-Seq" (Gargiulo et al., submitted).\

Display Conventions

\

\ The track annotates the location of NAS in the genome of human CD34+ and CD34- \ cells in the form of tags, generated by NA-Seq and obtained by merging NAS \ within 600 bp. Note that the method identifies a specific position in chromatin \ that is sensitive to nucleases, but does not map the boundaries of a \ regulatory element per se. A conservative estimate of element size would be \ the space occupied by one nucleosome, i.e., 180 - 200 bp surrounding the tag, \ although there is precedent in the literature for nuclease hypersensitive \ sites that span more than the length of one nucleosome (Turner, 2001; Wolffe, \ 1998; Boyle, 2008).\

Methods

\

\ CD34+ cells (enriched in hematopoietic stem and progenitor cells) were \ prepared from healthy donors following guidelines established by the Ethics \ Committee of the European Institute of Oncology (IEO), Milan. Mobilization of \ CD34+ cells to the peripheral blood was stimulated by G-CSF treatment \ according to standard procedures. After mobilization, donors were subjected to \ leukaphereses, and <10% of the sample was used in the experiment. CD34+ \ cells were purified using a magnetic positive selection procedure ("EASYSEP"; \ Stemcell, Vancouver, Canada). Purity of separation was evaluated by FACS \ after staining with an anti-Human CD34 FITC-conjugate antibody (Stemcell). \ Upon purification, the cell cycle status of the CD34+ cells was monitored by \ propidium iodide staining and FACS analysis. G0/G1 cells varied from \ approximately 90% to >95% of the total cells. Cells were immediately used \ for the isolation of NAS using the nuclease hypersensitive site isolation \ protocol (Gargiulo et al., submitted).\

Verification

\

\ The method was initially validated on human tissue culture cells by examining \ the colocalization of DNA fragments isolated from cells with experimentally \ determined nuclease hypersensitive sites in chromatin as mapped by indirect \ end-labeling and Southern blotting (Nedospasov and Georgiev, 1980; Wu, 1980). \ Nineteen out of nineteen randomly chosen clones from those libraries \ represented bona fide DNAse I hypersensitive sites in chromatin (Fyodor Urnov, \ unpublished results). These data confirmed that the method yields very \ high-content libraries of active cis-regulatory DNA elements, supporting its \ application to human CD34+ cells. In collaboration with scientists at the J. \ Craig Venter Institute and the European Institute of Oncology, libraries of \ NAS were prepared using this method in HT 454 sequencing from CD34+ and CD34- \ cells, and showed that 41 out of 51 randomly chosen clones - >80% - \ coincided with DNAse I hypersensitive sites (Gargiulo et al., submitted).\

Credits

\

\ The library of Nuclease Accessible sites (NAS) from human CD34+/CD34- cells \ was prepared and validated by Saverio Minucci and colleagues at the European \ Institute of Oncology. Sequencing was performed by Sam Levy and colleagues \ (J. Craig Venter Institute). This method was initially developed and validated \ by Fyodor Urnov, Alan Wolffe, and colleagues at Sangamo BioSciences, Inc. \

References

\

\ Boyle AP, Davis S, Shulha HP, Meltzer P, Margulies EH, Weng Z, Furey TS, Crawford GE.\ \ High-resolution mapping and characterization of open chromatin across the genome.\ Cell. 2008 Jan 25;132(2):311-22.\ PMID: 18243105; PMC: PMC2669738\

\ \

\ Elgin SC.\ \ The formation and function of DNase I hypersensitive sites in the process of gene activation.\ J Biol Chem. 1988 Dec 25;263(36):19259-62.\ PMID: 3198625\

\ \

\ Gargiulo G, Levy S, et al. A Global Analysis of chromatin Accessibility and \ Dynamics during Hematopoietic Differentiation. Submitted.

\ \

\ Gross DS, Garrard WT.\ \ Nuclease hypersensitive sites in chromatin.\ Annu Rev Biochem. 1988;57:159-97.\ PMID: 3052270\

\ \

\ Levine M, Tjian R.\ \ Transcription regulation and animal diversity.\ Nature. 2003 Jul 10;424(6945):147-51.\ PMID: 12853946\

\ \

\ Nedospasov SA, Georgiev GP.\ \ Non-random cleavage of SV40 DNA in the compact minichromosome and free in solution by micrococcal\ nuclease.\ Biochem Biophys Res Commun. 1980 Jan 29;92(2):532-9.\ PMID: 6243943\

\ \

\ Turner BM. \ \ Chromatin and Gene Regulation: Mechanisms in Epigenetics.\ Blackwell Science Ltd., Oxford. 2001.

\ \

\ Wolffe AP. Chromatin: Structure and Function. \ Academic Press, San Diego, CA. 1998.

\ \

\ Wu C.\ \ The 5' ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I.\ Nature. 1980 Aug 28;286(5776):854-60.\ PMID: 6774262\

\ regulation 1 compositeTrack on\ group regulation\ longLabel Eur. Inst. Oncology/J. C. Venter Inst. Nuclease Accessible Sites\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel CD34 DnaseI\ track eioJcviNAS\ type bed 3 .\ visibility hide\ gnomADPextCells_EBV_transformedlymphocytes Cells-EBV-transformed Lymphocytes bigWig 0 1 gnomAD pext Cells-EBV-transformed Lymphocytes 0 100 204 102 255 229 178 255 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Cells_EBV_transformedlymphocytes.bw\ color 204,102,255\ longLabel gnomAD pext Cells-EBV-transformed Lymphocytes\ parent gnomadPext off\ shortLabel Cells-EBV-transformed Lymphocytes\ track gnomADPextCells_EBV_transformedlymphocytes\ visibility hide\ gnomADPextCells_Transformedfibroblasts Cells-Transformed Fibroblasts bigWig 0 1 gnomAD pext Cells-Transformed Fibroblasts 0 100 170 238 255 212 246 255 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Cells_Transformedfibroblasts.bw\ color 170,238,255\ longLabel gnomAD pext Cells-Transformed Fibroblasts\ parent gnomadPext off\ shortLabel Cells-Transformed Fibroblasts\ track gnomADPextCells_Transformedfibroblasts\ visibility hide\ gnomADPextCervix_Ectocervix Cervix-Ectocervix bigWig 0 1 gnomAD pext Cervix-Ectocervix 0 100 255 204 204 255 229 229 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Cervix_Ectocervix.bw\ color 255,204,204\ longLabel gnomAD pext Cervix-Ectocervix\ parent gnomadPext off\ shortLabel Cervix-Ectocervix\ track gnomADPextCervix_Ectocervix\ visibility hide\ gnomADPextCervix_Endocervix Cervix-Endocervix bigWig 0 1 gnomAD pext Cervix-Endocervix 0 100 204 170 221 229 212 238 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Cervix_Endocervix.bw\ color 204,170,221\ longLabel gnomAD pext Cervix-Endocervix\ parent gnomadPext off\ shortLabel Cervix-Endocervix\ track gnomADPextCervix_Endocervix\ visibility hide\ hapmapAllelesChimp Chimp Alleles bed 6 + Orthologous Alleles from Chimp (panTro2) 0 100 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Orthologous Alleles from Chimp (panTro2)\ parent hapmapSnps\ priority 100\ shortLabel Chimp Alleles\ track hapmapAllelesChimp\ wgEncodeOpenChromChipViewSignal ChIP F-Seq DS bed 3 Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin) 2 100 0 0 0 127 127 127 1 0 0 regulation 1 autoScale off\ longLabel Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)\ maxHeightPixels 100:32:16\ maxLimit 0.2\ minLimit 0\ parent wgEncodeOpenChromChip\ shortLabel ChIP F-Seq DS\ track wgEncodeOpenChromChipViewSignal\ view SIG\ viewLimits 0:0.1\ visibility full\ windowingFunction mean+whiskers\ chm13LiftOver CHM13 alignments bigChain GCA_009914755.4 CHM13 (GCA_009914755.4) v1_nfLO liftOver alignments 0 100 120 20 0 187 137 127 0 0 0

Description

\

\ These tracks show the one-to-one v1_nfLO alignments of the GRCh37/hg19 to the\ T2T-CHM13 v2.0 assembly.\

\ \

Display Conventions

\

\ The track displays boxes joined together by either single or double lines,\ with the boxes represent aligning regions, single lines indicating gaps that\ are largely due to a deletion in the CHM13 v2.0 assembly or an insertion in\ the GRCh37/hg19, and double lines representing more complex gaps that involve\ substantial sequence in both assembly.\

\ \ \

Methods

\

Alignment and Chain Creation

\

\ For the minimap2-based pipeline, the initial chain file was generated using\ nf-LO v1.5.1 with\ minimap2 v2.24 alignments. \ These chains were then split at all locations that contained unaligned segments greater \ than 1 kbp or gaps greater than 10 kbp. Split chain files were then converted to PAF format \ with extended CIGAR strings using chaintools (v0.1), \ and alignments between nonhomologous chromosomes were removed. The trim-paf operation of \ rustybam (v0.1.29) was next used to remove overlapping \ alignments in the query sequence, and then the target sequence, to create 1:1 alignments. \ PAF alignments were converted back to the chain format with paf2chain commit f68eeca, and \ finally, chaintools was used to generate the inverted chain file.\

\ \

\ Full commands with parameters used were:\

\ 
\
    nextflow run main.nf --source GRCh37.fa --target chm13v2.0.fasta --outdir dir -profile local --aligner minimap2\
    python chaintools/src/split.py -c input.chain -o input-split.chain\
    python chaintools/src/to_paf.py -c input-split.chain -t target.fa -q query.fa -o input-split.paf\
    awk '$1==$6' input-split.paf | rb break-paf --max-size 10000  | rb trim-paf -r | rb invert | rb trim-paf -r | rb invert > out.paf\
    paf2chain -i out.paf > out.chain\
    python chaintools/src/invert.py -c out.chain -o out_inverted.chain\
\ \

\ The above process does not add chain ids or scores. The UCSC utilities\ chainMergeSort and chainScore are used to update the\ chains:\ \ 

\
    chainMergeSort out.chain | chainScore stdin chm13v2.0.2bit hg19.2bit chm13v2.0-hg19.chain\
    chainMergeSort out_inverted.chain | chainScore stdin hg19.2bit chm13v2.0.2bit hg19-chm13v2.0.chain\
\

\ \

\ Rustybam trim-paf\ uses dynamic programming and the CIGAR string to find an optimal\ splitting point between overlapping alignments in the query sequence. It\ starts its trimming with the largest overlap and then recursively trims\ smaller overlaps.\

\ \

\ Results were validated by using chaintools to confirm that there were no\ overlapping sequences with respect to both CHM13v2.0 and GRCh37 in the\ released chain file. In addition, trimmed alignments were visually inspected\ with SafFire to confirm their quality.\

\ \

\ Chains were swapped to make GRCh37/hg19 the target.\

\ \

Credits

\

\ The v1_nflo chains were generated by Nae-Chyun Chen<naechyun.chen@gmail.com>\ and Mitchell Vollger<mvollger@uw.edu>\

\ \

References

\

\

Nurk S, Koren S, Rhie A, Rautiainen M, et al. The complete sequence of a human genome. bioRxiv, 2021.

\

\ \ compGeno 1 bigDataUrl /gbdb/hg19/bbi/chm13LiftOver/hg19-chm13v2.ncbi-qnames.over.chain.bb\ color 120,20,0\ group compGeno\ linkDataUrl /gbdb/hg19/bbi/chm13LiftOver/hg19-chm13v2.ncbi-qnames.over.link.bb\ longLabel CHM13 (GCA_009914755.4) v1_nfLO liftOver alignments\ shortLabel CHM13 alignments\ track chm13LiftOver\ type bigChain GCA_009914755.4\ visibility hide\ cytoBand Chromosome Band bed 4 + Chromosome Bands Localized by FISH Mapping Clones 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ The chromosome band track represents the approximate \ location of bands seen on Giemsa-stained chromosomes.\ Chromosomes are displayed in the browser with the short arm first. \ Cytologically identified bands on the chromosome are numbered outward \ from the centromere on the short (p) and long (q) arms. At low resolution, \ bands are classified using the nomenclature \ [chromosome][arm][band], where band is a \ single digit. Examples of bands on chromosome 3 include 3p2, 3p1, cen, 3q1, \ and 3q2. At a finer resolution, some of the bands are subdivided into \ sub-bands, adding a second digit to the band number, e.g. 3p26. This \ resolution produces about 500 bands. A final subdivision into a \ total of 862 sub-bands is made by adding a period and another digit to the \ band, resulting in 3p26.3, 3p26.2, etc.

\ \

Methods

\

\ Chromosome band information was downloaded from NCBI\ using the ideogram.gz file for the respective assembly. These data were then \ transformed into our visualization format. See our \ assembly creation documentation for the organism of interest\ to see the specific steps taken to transform these data.\ Band lengths are typically estimated based on FISH or other\ molecular markers interpreted via microscopy.

\

\ For some of our older assemblies, greater than 10 years old, the tracks were\ created as detailed below and in Furey and Haussler, 2003.

\

\ Barbara Trask, Vivian Cheung, Norma Nowak and others in the BAC Resource\ Consortium used fluorescent in-situ hybridization (FISH) to determine a \ cytogenetic location for large genomic clones on the chromosomes.\ The results from these experiments are the primary source of information used\ in estimating the chromosome band locations.\ For more information about the process, see the paper, Cheung,\ et al., 2001. and the accompanying web site,\ Human BAC Resource.

\

\ BAC clone placements in the human sequence are determined at UCSC using a \ combination of full BAC clone sequence, BAC end sequence, and STS marker \ information.

\ \

Credits

\

\ We would like to thank all the labs that have contributed to this resource:\

\ \

References

\

\ Cheung VG, Nowak N, Jang W, Kirsch IR, Zhao S, Chen XN, Furey TS, Kim UJ, Kuo WL, Olivier M et\ al.\ \ Integration of cytogenetic landmarks into the draft sequence of the human genome.\ Nature. 2001 Feb 15;409(6822):953-8.\ PMID: 11237021\

\ \

\ Furey TS, Haussler D.\ \ Integration of the cytogenetic map with the draft human genome sequence.\ Hum Mol Genet. 2003 May 1;12(9):1037-44.\ PMID: 12700172\

\ \ map 1 group map\ longLabel Chromosome Bands Localized by FISH Mapping Clones\ shortLabel Chromosome Band\ track cytoBand\ type bed 4 +\ visibility hide\ cytoBandIdeo Chromosome Band (Ideogram) bed 4 + Chromosome Bands Localized by FISH Mapping Clones (for Ideogram) 1 100 0 0 0 127 127 127 0 0 0 map 1 group map\ longLabel Chromosome Bands Localized by FISH Mapping Clones (for Ideogram)\ shortLabel Chromosome Band (Ideogram)\ track cytoBandIdeo\ type bed 4 +\ visibility dense\ clinGenComp ClinGen bigBed 9 + ClinGen curation activities (Dosage Sensitivity and Gene-Disease Validity) 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ \

\

NOTE:
\ These data are for research purposes only. While the ClinGen data are \ open to the public, users seeking information about a personal medical or \ genetic condition are urged to consult with a qualified physician for \ diagnosis and for answers to personal medical questions.\

\

\ UCSC presents these data for use by qualified professionals, and even \ such professionals should use caution in interpreting the significance of \ information found here. No single data point should be taken at face \ value and such data should always be used in conjunction with as much \ corroborating data as possible. No treatment protocols should be \ developed or patient advice given on the basis of these data without \ careful consideration of all possible sources of information.\

\

\ No attempt to identify individual patients should \ be undertaken. No one is authorized to attempt to identify patients \ by any means.\

\ \
\ \

\ The Clinical Genome Resource (ClinGen)\ tracks display data generated from several key curation activities related to gene-disease validity,\ dosage sensitivity, and variant pathogenicity.\ ClinGen is a National Institute of Health (NIH)-funded initiative dedicated to \ identifying clinically relevant genes and variants for use in precision medicine and research. \ This is accomplished by harnessing the data from both research efforts and clinical genetic \ testing and using it to propel expert and machine-driven curation activities. \ ClinGen works closely with the National Center for Biotechnology Information (NCBI) of the \ National Library of Medicine (NLM)\ which distributes part of this information through its ClinVar database.\

\ \

\ The available data tracks are:\

    \
  • ClinGen Dosage Sensitivity Map -Haploinsufficiency (ClinGen \ Haploinsufficiency) and -Triplosensitivity (ClinGen Triplosensitivity) -\ Shows evidence supporting or refuting haploinsufficiency (loss) and triplosensitivity (gain) as \ mechanisms for disease at gene-level and larger genomic regions.\
    • \
  • ClinGen Gene-Disease Validity Classification (ClinGen Validity) -\ Provides a semi-qualitative measurement for the strength of evidence of a gene-disease relationship. \
    • \
\

\

\ A rating system is used to classify the evidence supporting or refuting dosage\ sensitivity for individual genes and regions, which takes in consideration the following criteria:\ number of causative variants reported, patterns of inheritance, consistency of phenotype, evidence\ from large-scale case-control studies, mutational mechanisms, data from public genome variation \ databases, and expert consensus opinion.\

\

\ The system is intended to be of a "dynamic nature", with regions being reevaluated periodically to \ incorporate emerging evidence. The evidence collected is displayed within a publicly available \ database. \ Evidence that haploinsufficiency or triplosensitivity of a gene is associated with a specific \ phenotype will aid in the interpretive assessment of CNVs including that gene or genomic region.\

\

\ Similarly, a qualitative classification system is used to correlate the evidence of \ a gene-disease relationship: "Definitive", "Strong", "Moderate", \ "Limited", "Animal Model Only", \ "No Known Disease Relationship", "Disputed", or "Refuted".\

\ \

Display Conventions

\

Haploinsufficiency/Triplosensitivity tracks

\

\ Items are shaded according to dosage sensitivity type, red \ for haploinsufficiency score 3, blue for triplosensitivity score 3, \ and grey for other evidence scores or \ not yet evaluated).\ Mouseover on items shows the supporting evidence of dosage sensitivity.\ Tracks can be filtered according to the supporting evidence of dosage sensitivity.\ \

\ Dosage Scores are used to classify the evidence of the supporting dosage sensitivity map:\

\
0 - no evidence available
\
1 - little evidence for dosage pathogenicity
\
2 - some evidence for dosage pathogenicity
\
3 - sufficient evidence for dosage pathogenicity
\
30 - gene associated with autosomal recessive phenotype
\
40 - dosage sensitivity unlikely
\
\

\ \

\ For more information on the use of the scores see the ClinGen\ FAQs.\

\ \

Gene-Disease Validity track

\ \

\ The gene-disease validity classifications are labeled with the disease entity and hovering \ over the features shows the associated gene. Items are color coded based on the strength of their \ classification as provided below:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
ColorClassifications
Definitive: The role of this gene in this particular disease has been \ repeatedly demonstrated and has been upheld over time
Strong: The role of this gene in disease has been independently\ demonstrated typically in at least two separate studies, including both strong variant-level\ evidence in unrelated probands and compelling gene-level evidence from experimental data
Moderate: There is moderate evidence to support a causal role for this\ gene in this disease, typically including both several probands with variants and moderate \ experimental data supporting the gene-disease assertion
Limited: There is limited evidence to support a causal role for this \ gene in this disease, such as few probands with variants and limited experimental data supporting \ the gene-disease assertion
Animal Model Only: There are no published human probands with variants \ but there is animal model data supporting the gene-disease assertion
No Known Disease Relationship: Evidence for a causal role in disease \ has not been reported
Disputed: Conflicting evidence disputing a role for this gene in this \ disease has arisen since the initial report identifying an association between the gene and disease
Refuted: Evidence refuting the role of the gene in the specified \ disease has been reported and significantly outweighs any evidence supporting the role
\ \

\ The version of the ClinGen Standard Operating Procedures (SOPs) that each gene-disease \ classification was performed with is provided as well. An older or newer SOP version does not \ necessarily mean the classification is any more or less valid but is provided for clarity. \ Each details page also contains a direct link to an evidence summary detailing the rationale behind\ the specific classification and information such as a breakdown of the semi-qualitative framework, \ relevant PubMed IDs, the type of data (Genetic vs Experimental Evidence), and a detailed summary.\

\ \

\ These tracks are multi-view composite tracks that contain multiple data types (views). Each view \ within a track has separate display controls, as described \ here.\

\ \

Data Updates

\ Our programs check every day if ClinGen has an updated data file, and if so, update the track with the latest file.\ Click the "Data Format" on this track documentation page to see when the track was last updated.\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ or the Data Integrator. For automated analysis, the data may \ be queried from our REST API. Please refer to our \ mailing list archives\ for questions, or our Data Access FAQ for more\ information.\

\ \

\ Data is also freely available on the ClinGen website \ (gene-disease curation methods) \ and FTP (dosage curations). \

\ \ \

Credits

\

\ Thank you to ClinGen and NCBI, especially Erin Rooney Riggs, Christa Lese Martin, Tristan Nelson,\ May Flowers, Scott Goehringer, and Phillip Weller for technical coordination and \ consultation, and to Christopher Lee, Luis Nassar, and Anna Benet-Pages of the Genome \ Browser team.\

\ \

References

\ \

\ Rehm HL, Berg JS, Brooks LD, Bustamante CD, Evans JP, Landrum MJ, Ledbetter DH, Maglott DR, Martin\ CL, Nussbaum RL et al.\ \ ClinGen--the Clinical Genome Resource.\ N Engl J Med. 2015 Jun 4;372(23):2235-42.\ PMID: 26014595; PMC: PMC4474187\

\ \

\ Riggs ER, Church DM, Hanson K, Horner VL, Kaminsky EB, Kuhn RM, Wain KE, Williams ES, Aradhya S,\ Kearney HM et al.\ \ Towards an evidence-based process for the clinical interpretation of copy number variation.\ Clin Genet. 2012 May;81(5):403-12.\ PMID: 22097934; PMC: PMC5008023\

\ \

\ Strande NT, Riggs ER, Buchanan AH, Ceyhan-Birsoy O, DiStefano M, Dwight SS, Goldstein J, Ghosh R,\ Seifert BA, Sneddon TP et al.\ \ Evaluating the Clinical Validity of Gene-Disease Associations: An Evidence-Based Framework Developed\ by the Clinical Genome Resource.\ Am J Hum Genet. 2017 Jun 1;100(6):895-906.\ PMID: 28552198; PMC: PMC5473734\

\ \ phenDis 1 compositeTrack on\ group phenDis\ html clinGen\ itemRgb on\ longLabel ClinGen curation activities (Dosage Sensitivity and Gene-Disease Validity)\ noParentConfig on\ shortLabel ClinGen\ track clinGenComp\ type bigBed 9 +\ visibility hide\ iscaComposite ClinGen CNVs bed 3 Clinical Genome Resource (ClinGen) CNVs 0 100 0 0 0 127 127 127 0 0 0

\
\

The ClinGen CNVs track is no longer being updated. These data, along with updates,\ can be found in the \ ClinVar Copy Number Variants (ClinVar CNVs) track.

\

\ See our \ news archive for more information.

\

\ \

Description

\

\

\

NOTE:
\ These data are for research purposes only. While the ClinGen data are\ open to the public, users seeking information about a personal medical or\ genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal medical questions.\

\ \

UCSC presents these data for use by qualified professionals, and even\ such professionals should use caution in interpreting the significance of \ information found here. No single data point should be taken at face \ value and such data should always be used in conjunction with as much \ corroborating data as possible. No treatment protocols should be \ developed or patient advice given on the basis of these data without \ careful consideration of all possible sources of information.\

\ \

No attempt to identify individual patients should\ be undertaken. No one is authorized to attempt to identify patients \ by any means.\

\ \
\ \

\ \

\ The Clinical Genome Resource (ClinGen)\ is a National Institutes of Health (NIH)-funded program dedicated to building a genomic\ knowledge base to improve patient care. \ This will be accomplished by harnessing the data from both research efforts and clinical genetic\ testing, and using it to propel expert and machine-driven curation activities. \ By facilitating collaboration within the genomics community,\ we will all better understand the relationship between genomic variation and human health. \ ClinGen will work closely with the National\ Center for Biotechnology Information (NCBI) of the National Library of Medicine (NLM), \ which will distribute this information through its\ ClinVar database.\

\ \

\ The ClinGen dataset displays clinical microarray data submitted to dbGaP/dbVar at NCBI\ by ClinGen member laboratories (dbVar study\ nstd37),\ as well as clinical data reported in Kaminsky et al., 2011 (dbVar study\ ntsd101)\ (see reference below). This track shows copy number variants (CNVs) found in patients referred\ for genetic testing for indications such as intellectual disability, developmental delay,\ autism and congenital anomalies. Additionally, the ClinGen "Curated Pathogenic" and\ "Curated Benign" tracks represent genes/genomic regions reviewed for dosage sensitivity\ in an evidence-based manner by the ClinGen Structural Variation Working Group (dbVar study\ nstd45).\

\ \

The CNVs in this study have been reviewed for their clinical significance by\ the submitting ClinGen laboratory. Some of the deletions and duplications in the track\ have been reported as causative for a phenotype by the submitting clinical \ laboratory; this information was based on current knowledge at the time of submission.\ However, it should be noted that phenotype information is often vague and imprecise and\ should be used with caution. While all samples were submitted because of a phenotype in \ a patient, only 15% of patients had variants determined to be causal, \ and most patients will have additional variants that are not causal.\

\ \

CNVs are separated into subtracks and are labeled as:\

    \
  • Pathogenic
    • \
  • Uncertain: Likely Pathogenic
    • \
  • Uncertain
    • \
  • Uncertain: Likely Benign
    • \
  • Benign
    • \
\ The user should be aware that some of the data were submitted using a 3-class\ system, with the two "Likely" categories omitted. \

\ \

Two subtracks, "Path Gain" and "Path Loss", are aggregate tracks\ showing graphically the accumulated level of gains and losses in the \ Pathogenic subtrack across the genome. Similarly, "Benign Gain" and\ "Benign Loss" show the accumulated level of gains and losses in the\ Benign subtrack. These tracks are collectively called "Coverage"\ tracks.\

\ \

Many samples have multiple variants, not all of which are causative \ of the phenotype. The CNVs in these samples have been decoupled, so it is not\ possible to connect multiple imbalances as coming from a single patient.\ It is therefore not possible to identify individuals via their genotype. \

\ \ \

Methods and Color Convention

\

\ The samples were analyzed by arrays from patients referred for \ cytogenetic testing due to clinical phenotypes. Samples were analyzed with a \ probe spacing of 20-75 kb. The minimum CNV breakpoints are shown; if available,\ the maximum CNV breakpoints are provided in the details page, but are not shown \ graphically on the Browser image.\

\ \

Data were submitted to \ dbGaP at NCBI and thence decoupled as described into\ dbVar for unrestricted release.\

\ \

\ The entries are colored red for loss and \ blue for gain. The names of items use the \ ClinVar convention of appending "_inheritance" indicating the mechanism of \ inheritance, if known: "_pat, _mat, _dnovo, _unk" as paternal, maternal, \ de novo and unknown, respectively. \

\ \

Verification

\

\ Most data were validated by the submitting laboratory using various methods, \ including FISH, G-banded karyotype, MLPA and qPCR.\

\ \

Credits

\

\ Thank you to ClinGen and NCBI for technical coordination and consultation, and to\ the UCSC Genome Browser staff for engineering the track display.\

\ \

References

\

\ Miller DT, Adam MP, Aradhya S, Biesecker LG, Brothman AR, Carter NP, Church DM, Crolla JA, Eichler\ EE, Epstein CJ et al.\ \ Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals\ with developmental disabilities or congenital anomalies.\ Am J Hum Genet. 2010 May 14;86(5):749-64.\ PMID: 20466091; PMC: PMC2869000\

\ \

\ Kaminsky EB, Kaul V, Paschall J, Church DM, Bunke B, Kunig D, Moreno-De-Luca D, Moreno-De-Luca A,\ Mulle JG, Warren ST et al.\ \ An evidence-based approach to establish the functional and clinical significance of copy number\ variants in intellectual and developmental disabilities.\ Genet Med. 2011 Sep;13(9):777-84.\ PMID: 21844811; PMC: PMC3661946\

\ phenDis 1 compositeTrack on\ dimensions dimensionY=class dimensionX=level\ group phenDis\ longLabel Clinical Genome Resource (ClinGen) CNVs\ pennantIcon snowflake.png /goldenPath/newsarch.html#093020b "ClinGen CNV data are now updated on ClinVar Variants track. See news archive for details."\ shortLabel ClinGen CNVs\ sortOrder class=+ level=+ view=+\ subGroup1 view Views cov=Coverage cnv=CNVs dose=Dose\ subGroup2 class Class path=Pathogenic likP=Likely_Pathogenic unc=Uncertain likB=Likely_Benign ben=Benign\ subGroup3 level Evidence cur=Curated sub=Submitted\ track iscaComposite\ type bed 3\ visibility hide\ clinvarSubLolly ClinVar interp bigLolly ClinVar SNVs submitted interpretations and evidence 0 100 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg19/clinvarSubLolly/clinvarSubLolly.bb\ configurable off\ group phenDis\ lollyMaxSize 10\ lollyNoStems on\ lollySizeField 10\ longLabel ClinVar SNVs submitted interpretations and evidence\ mouseOverField _mouseOver\ parent clinvar\ shortLabel ClinVar interp\ skipFields reviewStatus\ track clinvarSubLolly\ type bigLolly\ urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/snp/$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"\ viewLimits 0:5\ xrefDataUrl /gbdb/hg19/clinvarSubLolly/clinvarSub.bb\ yAxisLabel.0 0 on 150,150,150 OTH\ yAxisLabel.1 1 on 150,150,150 B\ yAxisLabel.2 2 on 150,150,150 LB\ yAxisLabel.3 3 on 150,150,150 VUS\ yAxisLabel.4 4 on 150,150,150 LP\ yAxisLabel.5 5 on 150,150,150 P\ yAxisNumLabels off\ clinvar ClinVar Variants bed 12 + ClinVar Variants 0 100 0 0 0 127 127 127 0 0 0

Description

\ \
\

NOTE:
\ ClinVar is intended for use primarily by physicians and other\ professionals concerned with genetic disorders, by genetics researchers, and\ by advanced students in science and medicine. While the ClinVar database is\ open to all academic users, users seeking information about a personal medical\ or genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal questions.

\
\ \

\ These tracks show the genomic positions of variants in the\ ClinVar database. \ ClinVar is a free, public archive of reports\ of the relationships among human variations and phenotypes, with supporting\ evidence.

\ \

\ The ClinVar SNVs track displays substitutions and indels shorter than 50 bp and \ the ClinVar CNVs track displays copy number variants (CNVs) equal or larger than 50 bp.\ Until October 2017, all variants with the ClinVar types \ copy number gain/loss and DbVar "nsv" accessions were assigned in the CNV \ category. Because the ClinVar type no longer captures this information, any variation equal to or \ larger than 50 bp is now considered a CNV.\

\ \

\ The ClinVar Interpretations track displays the genomic positions of individual variant \ submissions and interpretations of the clinical significance and their relationship to disease in \ the ClinVar database.\

\ \

\ Note: The data in the track are obtained directly from ClinVar's FTP site.\ We display the data obtained from ClinVar as-is to avoid discrepancies between UCSC and NCBI. \ However, be aware that the ClinVar conventions are different from the VCF standard. \ Variants may be right-aligned or may contain additional context, e.g. for\ inserts. ExAC/gnomAD make available a converter\ to make ClinVar more comparable to VCF files.

\ \

Display Conventions and Configuration

\ \

\ Items can be filtered according to the size of the variant, variant type, clinical significance,\ allele origin, and molecular consequence, using the track Configure options.\ Each subtrack has separate display controls, as described\ here.\

\ \

\ Mouseover on the genomic locations of ClinVar variants shows variant details, clinical \ interpretation, and associated conditions. Further information on each variant is displayed on \ the details page by a click onto any variant. ClinVar is an archive for assertions of clinical \ significance made by the submitters. The level of review supporting the assertion of clinical \ significance for the variation is reported as the \ review status. \ Stars (0 to 4) provide a graphical representation of the aggregate review status. \

\ \

\ Entries in the ClinVar CNVs track are colored by type of variant, among others:\

    \
  • red for loss
    • \
  • blue for gain
    • \
  • purple for inversion
    • \
  • orange for insertion
    • \
\ A light-to-dark color gradient indicates the clinical significance of each variant, with the \ lightest shade being benign, to the darkest shade being pathogenic. Detailed information on the \ CNV color code is described \ here. \

\ \

\ Entries in the ClinVar SNVs and ClinVar Interpretations tracks are colored by clinical \ significance:\

    \
  • red for pathogenic
    • \
  • dark blue for variant of uncertain significance
    • \
  • green for benign
    • \
  • dark grey for not provided
    • \
  • light blue for conflicting
    • \
\

\ \

\ The variants in the ClinVar Interpretations track are sorted by the variant \ classification of each submission:\

    \
  • P: Pathogenic
    • \
  • LP: Likely Pathogenic
    • \
  • VUS: Variant of Unknown Significance
    • \
  • LB: Likely Benign
    • \
  • B: Benign
    • \
  • OTH: Others
    • \
\ The size of the bead represents \ the number of submissions at that genomic position. For track display clarity, these submission\ numbers are binned into three categories:\
    \
  • Small-sized beads: 1-2 submissions
    • \
  • Medium-sized beads: 3-7 submissions
    • \
  • Large-sized beads: 8 or more submissions
    • \
\ Hovering on the track items shows the genomic variations which start at that position \ and the number of individual submissions with that classification. The details page lists all\ rated submissions from ClinVar, with specific details to the interpretation of the clinical or \ functional significance of each variant in relation to a condition. Interpretation is at \ variant-level, not at case (or patient-specific) level.\

\ \

\ More information about using and understanding the ClinVar data can be found \ here.\

\ \

\ For the human genome version hg19: the hg19 genome released by UCSC in 2009 had a \ mitochondrial genome "chrM" that was not the same as the one later used for most\ databases like ClinVar. As a result, we added the official mitochondrial genome\ in 2020 as "chrMT" and all mitochondrial annotations of ClinVar and most other\ databases are shown on the mitochondrial genome called "chrMT". For full description\ of the issue of the mitochondrial genome in hg19, please see the \ README file \ on our download site. \

\ \ \

Data updates

\

ClinVar publishes a new release on the \ first Thursday every month. \ This track is then updated automatically at most six days \ later. The exact date of our last update is shown when you click onto any variant. \ You can find the previous versions of the track organized by month on our\ downloads server in the \ archive\ directory. To display one of these previous versions, paste the URL to one of\ the older files into the custom track text input field under "My Data > Custom Tracks".

\ \

Data access

\

\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator. The data can be\ accessed from scripts through our API, the track names are\ "clinVarMain and "clinVarCnv".\ \

\ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ The files for this track are called clinVarMain.bb and clinVarCnv.bb. Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool\ can also be used to obtain only features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi/clinvar/clinvarMain.bb -chrom=chr21 -start=0 -end=100000000 stdout

\

\ \

Methods

\ \

\ ClinVar files were reformatted at UCSC to the bigBed format.\ The data is updated every month, one week after the ClinVar release date.\ The program that performs the update is available on\ Github.\

\ \

Credits

\

\ Thanks to NCBI for making the ClinVar data available on their FTP site as a tab-separated file.\

\ \

References

\

\ Landrum MJ, Lee JM, Benson M, Brown G, Chao C, Chitipiralla S, Gu B, Hart J, Hoffman D, Hoover J\ et al.\ \ ClinVar: public archive of interpretations of clinically relevant variants.\ Nucleic Acids Res. 2016 Jan 4;44(D1):D862-8.\ PMID: 26582918; PMC: PMC4702865\

\ \

\ Azzariti DR, Riggs ER, Niehaus A, Rodriguez LL, Ramos EM, Kattman B, Landrum MJ, Martin CL, Rehm HL.\ \ Points to consider for sharing variant-level information from clinical genetic testing with\ ClinVar.\ Cold Spring Harb Mol Case Stud. 2018 Feb;4(1).\ PMID: 29437798; PMC: PMC5793773\

\ \ phenDis 1 compositeTrack on\ dataVersion /gbdb/$D/bbi/clinvarAlpha/version.txt\ group phenDis\ itemRgb on\ longLabel ClinVar Variants\ noParentConfig on\ scoreLabel ClinVar Star-Rating (0-4)\ shortLabel ClinVar Variants\ track clinvar\ type bed 12 +\ urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/snp/$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"\ visibility hide\ ghClusteredInteraction Clustered Interactions bigInteract GeneHancer Regulatory Elements and Gene Interactions 3 100 0 0 0 127 127 127 0 0 0 https://www.genecards.org/cgi-bin/carddisp.pl?gene=$&keywords=$&prefilter=enhancers#enhancers regulation 1 interactDirectional clusterTarget\ interactMultiRegion on\ longLabel GeneHancer Regulatory Elements and Gene Interactions\ parent geneHancer\ shortLabel Clustered Interactions\ track ghClusteredInteraction\ type bigInteract\ url https://www.genecards.org/cgi-bin/carddisp.pl?gene=$&keywords=$&prefilter=enhancers#enhancers\ urlLabel Interaction in GeneCards\ view d_I\ visibility pack\ wgEncodeGisRnaPetViewClusters Clusters bed 6 RNA Sub-cellular Localization by Paired-end diTag Sequencing from ENCODE/GIS 2 100 0 0 0 127 127 127 0 0 0 expression 1 longLabel RNA Sub-cellular Localization by Paired-end diTag Sequencing from ENCODE/GIS\ noScoreFilter on\ parent wgEncodeGisRnaPet\ shortLabel Clusters\ track wgEncodeGisRnaPetViewClusters\ type bed 6\ view v1Clusters\ visibility full\ iscaViewDetail CNVs gvf Clinical Genome Resource (ClinGen) CNVs 3 100 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/?term=$$ phenDis 1 longLabel Clinical Genome Resource (ClinGen) CNVs\ noScoreFilter .\ parent iscaComposite\ shortLabel CNVs\ track iscaViewDetail\ type gvf\ url https://www.ncbi.nlm.nih.gov/dbvar/?term=$$\ urlLabel ClinGen details:\ view cnv\ visibility pack\ gnomADPextColon_Sigmoid Colon-Sigmoid bigWig 0 1 gnomAD pext Colon-Sigmoid 0 100 238 187 119 246 221 187 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Colon_Sigmoid.bw\ color 238,187,119\ longLabel gnomAD pext Colon-Sigmoid\ parent gnomadPext off\ shortLabel Colon-Sigmoid\ track gnomADPextColon_Sigmoid\ visibility hide\ gnomADPextColon_Transverse Colon-Transverse bigWig 0 1 gnomAD pext Colon-Transverse 0 100 204 153 85 229 204 170 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Colon_Transverse.bw\ color 204,153,85\ longLabel gnomAD pext Colon-Transverse\ parent gnomadPext off\ shortLabel Colon-Transverse\ track gnomADPextColon_Transverse\ visibility hide\ pgSnpCg Complete Genomics pgSnp Personal Genome Variants 0 100 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Personal Genome Variants\ parent pgSnp\ shortLabel Complete Genomics\ track pgSnpCg\ view C_CG\ visibility hide\ constraintSuper Constraint scores bed Human constraint scores 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ The "Constraint scores" container track includes several subtracks showing the results of\ constraint prediction algorithms. These try to find regions of negative\ selection, where variations likely have functional impact. The algorithms do\ not use multi-species alignments to derive evolutionary constraint, but use\ primarily human variation, usually from variants collected by gnomAD (see the\ gnomAD V2 or V3 tracks on hg19 and hg38) or TOPMED (contained in our dbSNP\ tracks and available as a filter). One of the subtracks is based on UK Biobank\ variants, which are not available publicly, so we have no track with the raw data.\ The number of human genomes that are used as the input for these scores are\ 76k, 53k and 110k for gnomAD, TOPMED and UK Biobank, respectively.\

\ \

Note that another important constraint score, gnomAD\ constraint, is not part of this container track but can be found in the hg38 gnomAD\ track.\

\ \ The algorithms included in this track are:\
    \
  1. \ JARVIS - "Junk" Annotation genome-wide Residual Variation Intolerance Score: \ JARVIS scores were created by first scanning the entire genome with a\ sliding-window approach (using a 1-nucleotide step), recording the number of\ all TOPMED variants and common variants, irrespective of their predicted effect,\ within each window, to eventually calculate a single-nucleotide resolution\ genome-wide residual variation intolerance score (gwRVIS). That score, gwRVIS\ was then combined with primary genomic sequence context, and additional genomic\ annotations with a multi-module deep learning framework to infer\ pathogenicity of noncoding regions that still remains naive to existing\ phylogenetic conservation metrics. The higher the score, the more deleterious\ the prediction. This score covers the entire genome, except the gaps.\ \
  2. \ HMC - Homologous Missense Constraint:\ Homologous Missense Constraint (HMC) is a amino acid level measure\ of genetic intolerance of missense variants within human populations.\ For all assessable amino-acid positions in Pfam domains, the number of\ missense substitutions directly observed in gnomAD (Observed) was counted\ and compared to the expected value under a neutral evolution\ model (Expected). The upper limit of a 95% confidence interval for the\ Observed/Expected ratio is defined as the HMC score. Missense variants\ disrupting the amino-acid positions with HMC<0.8 are predicted to be\ likely deleterious. This score only covers PFAM domains within coding regions.\ \
  3. \ MetaDome - Tolerance Landscape Score (hg19 only):\ MetaDome Tolerance Landscape scores are computed as a missense over synonymous \ variant count ratio, which is calculated in a sliding window (with a size of 21 \ codons/residues) to provide \ a per-position indication of regional tolerance to missense variation. The \ variant database was gnomAD and the score corrected for codon composition. Scores \ <0.7 are considered intolerant. This score covers only coding regions.\ \
  4. \ MTR - Missense Tolerance Ratio (hg19 only):\ Missense Tolerance Ratio (MTR) scores aim to quantify the amount of purifying \ selection acting specifically on missense variants in a given window of \ protein-coding sequence. It is estimated across sliding windows of 31 codons \ (default) and uses observed standing variation data from the WES component of \ gnomAD / the Exome Aggregation Consortium Database (ExAC), version 2.0. Scores\ were computed using Ensembl v95 release. The number of gnomAD 2 exomes used here\ is higher than the number of gnomAD 3 samples (125 exoms versus 76k full genomes), \ but this score only covers coding regions.\ \
  5. \ UK Biobank depletion rank score (hg38 only):\ Halldorsson et al. tabulated the number of UK Biobank variants in each\ 500bp window of the genome and compared this number to an expected number\ given the heptamer nucleotide composition of the window and the fraction of\ heptamers with a sequence variant across the genome and their mutational\ classes. A variant depletion score was computed for every overlapping set\ of 500-bp windows in the genome with a 50-bp step size. They then assigned\ a rank (depletion rank (DR)) from 0 (most depletion) to 100 (least\ depletion) for each 500-bp window. Since the windows are overlapping, we\ plot the value only in the central 50bp of the 500bp window, following\ advice from the author of the score,\ Hakon Jonsson, deCODE Genetics. He suggested that the value of the central\ window, rather than the worst possible score of all overlapping windows, is\ the most informative for a position. This score covers almost the entire genome,\ only very few regions were excluded, where the genome sequence had too many gap characters.
\ \

Display Conventions and Configuration

\ \

JARVIS

\

\ JARVIS scores are shown as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The scores were downloaded and converted to a single bigWig file.\ Move the mouse over the bars to display the exact values. A horizontal line is shown at the 0.733\ value which signifies the 90th percentile.

\ See hg19 makeDoc and\ hg38 makeDoc.

\

\ Interpretation: The authors offer a suggested guideline of > 0.9998 for identifying\ higher confidence calls and minimizing false positives. In addition to that strict threshold, the \ following two more relaxed cutoffs can be used to explore additional hits. Note that these\ thresholds are offered as guidelines and are not necessarily representative of pathogenicity.

\ \

\ \ \ \ \ \ \ \ \ \
PercentileJARVIS score threshold
99th0.9998
95th0.9826
90th0.7338
\

\ \

HMC

\

\ HMC scores are displayed as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The highly-constrained cutoff\ of 0.8 is indicated with a line.

\

\ Interpretation: \ A protein residue with HMC score <1 indicates that missense variants affecting\ the homologous residues are significantly under negative selection (P-value <\ 0.05) and likely to be deleterious. A more stringent score threshold of HMC<0.8\ is recommended to prioritize predicted disease-associated variants.\

\ \

MetaDome

\

\ MetaDome data can be found on two tracks, MetaDome and MetaDome All Data.\ The MetaDome track should be used by default for data exploration. In this track\ the raw data containing the MetaDome tolerance scores were converted into a signal ("wiggle")\ track. Since this data was computed on the proteome, there was a small amount of coordinate\ overlap, roughly 0.42%. In these regions the lowest possible score was chosen for display\ in the track to maintain sensitivity. For this reason, if a protein variant is being evaluated,\ the MetaDome All Data track can be used to validate the score. More information\ on this data can be found in the MetaDome FAQ.

\

\ Interpretation: The authors suggest the following guidelines for evaluating\ intolerance. By default, the MetaDome track displays a horizontal line at 0.7 which \ signifies the first intolerant bin. For more information see the MetaDome publication.

\ \

\ \ \ \ \ \ \ \ \ \
ClassificationMetaDome Tolerance Score
Highly intolerant≤ 0.175
Intolerant≤ 0.525
Slightly intolerant≤ 0.7
\

\ \

MTR

\

\ MTR data can be found on two tracks, MTR All data and MTR Scores. In the\ MTR Scores track the data has been converted into 4 separate signal tracks\ representing each base pair mutation, with the lowest possible score shown when\ multiple transcripts overlap at a position. Overlaps can happen since this score\ is derived from transcripts and multiple transcripts can overlap. \ A horizontal line is drawn on the 0.8 score line\ to roughly represent the 25th percentile, meaning the items below may be of particular\ interest. It is recommended that the data be explored using\ this version of the track, as it condenses the information substantially while\ retaining the magnitude of the data.

\ \

Any specific point mutations of interest can then be researched in the \ MTR All data track. This track contains all of the information from\ \ MTRV2 including more than 3 possible scores per base when transcripts overlap.\ A mouse-over on this track shows the ref and alt allele, as well as the MTR score\ and the MTR score percentile. Filters are available for MTR score, False Discovery Rate\ (FDR), MTR percentile, and variant consequence. By default, only items in the bottom\ 25 percentile are shown. Items in the track are colored according\ to their MTR percentile:

\
    \
  • Green items MTR percentiles over 75\
  • Black items MTR percentiles between 25 and 75\
  • Red items MTR percentiles below 25\
  • Blue items No MTR score\
\

\ Interpretation: Regions with low MTR scores were seen to be enriched with\ pathogenic variants. For example, ClinVar pathogenic variants were seen to\ have an average score of 0.77 whereas ClinVar benign variants had an average score\ of 0.92. Further validation using the FATHMM cancer-associated training dataset saw\ that scores less than 0.5 contained 8.6% of the pathogenic variants while only containing\ 0.9% of neutral variants. In summary, lower scores are more likely to represent\ pathogenic variants whereas higher scores could be pathogenic, but have a higher chance\ to be a false positive. For more information see the MTR-Viewer publication.

\ \

Methods

\ \

JARVIS

\

\ Scores were downloaded and converted to a single bigWig file. See the\ hg19 makeDoc and the\ hg38 makeDoc for more info.\

\ \

HMC

\

\ Scores were downloaded and converted to .bedGraph files with a custom Python \ script. The bedGraph files were then converted to bigWig files, as documented in our \ makeDoc hg19 build log.

\ \

MetaDome

\

\ The authors provided a bed file containing codon coordinates along with the scores. \ This file was parsed with a python script to create the two tracks. For the first track\ the scores were aggregated for each coordinate, then the lowest score chosen for any\ overlaps and the result written out to bedGraph format. The file was then converted\ to bigWig with the bedGraphToBigWig utility. For the second track the file\ was reorganized into a bed 4+3 and conveted to bigBed with the bedToBigBed\ utility.

\

\ See the hg19 makeDoc for details including the build script.

\

\ The raw MetaDome data can also be accessed via their Zenodo handle.

\ \

MTR

\

\ V2\ file was downloaded and columns were reshuffled as well as itemRgb added for the\ MTR All data track. For the MTR Scores track the file was parsed with a python\ script to pull out the highest possible MTR score for each of the 3 possible mutations\ at each base pair and 4 tracks built out of these values representing each mutation.

\

\ See the hg19 makeDoc entry on MTR for more info.

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

\ \

\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

\ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/hmc/hmc.bw stdout\
\

\ \

\ Please refer to our\ Data Access FAQ\ for more information.\

\ \ \

Credits

\ \

\ Thanks to Jean-Madeleine Desainteagathe (APHP Paris, France) for suggesting the JARVIS, MTR, HMC tracks. Thanks to Xialei Zhang for providing the HMC data file and to Dimitrios Vitsios and Slave Petrovski for helping clean up the hg38 JARVIS files for providing guidance on interpretation. Additional\ thanks to Laurens van de Wiel for providing the MetaDome data as well as guidance on the track development and interpretation. \

\ \

References

\ \

\ Vitsios D, Dhindsa RS, Middleton L, Gussow AB, Petrovski S.\ \ Prioritizing non-coding regions based on human genomic constraint and sequence context with deep\ learning.\ Nat Commun. 2021 Mar 8;12(1):1504.\ PMID: 33686085; PMC: PMC7940646\

\ \

\ Xiaolei Zhang, Pantazis I. Theotokis, Nicholas Li, the SHaRe Investigators, Caroline F. Wright, Kaitlin E. Samocha, Nicola Whiffin, James S. Ware\ \ Genetic constraint at single amino acid resolution improves missense variant prioritisation and gene discovery.\ Medrxiv 2022.02.16.22271023\

\ \

\ Wiel L, Baakman C, Gilissen D, Veltman JA, Vriend G, Gilissen C.\ \ MetaDome: Pathogenicity analysis of genetic variants through aggregation of homologous human protein\ domains.\ Hum Mutat. 2019 Aug;40(8):1030-1038.\ PMID: 31116477; PMC: PMC6772141\

\ \

\ Silk M, Petrovski S, Ascher DB.\ \ MTR-Viewer: identifying regions within genes under purifying selection.\ Nucleic Acids Res. 2019 Jul 2;47(W1):W121-W126.\ PMID: 31170280; PMC: PMC6602522\

\ \

\ Halldorsson BV, Eggertsson HP, Moore KHS, Hauswedell H, Eiriksson O, Ulfarsson MO, Palsson G,\ Hardarson MT, Oddsson A, Jensson BO et al.\ \ The sequences of 150,119 genomes in the UK Biobank.\ Nature. 2022 Jul;607(7920):732-740.\ PMID: 35859178; PMC: PMC9329122\

\ \ phenDis 1 group phenDis\ longLabel Human constraint scores\ shortLabel Constraint scores\ superTrack on hide\ track constraintSuper\ type bed\ visibility hide\ wgEncodeCshlLongRnaSeqViewContigs Contigs bed 3 Long RNA-seq from ENCODE/Cold Spring Harbor Lab 3 100 0 0 0 127 127 127 0 0 0 expression 1 longLabel Long RNA-seq from ENCODE/Cold Spring Harbor Lab\ parent wgEncodeCshlLongRnaSeq\ shortLabel Contigs\ track wgEncodeCshlLongRnaSeqViewContigs\ view Contigs\ visibility pack\ coriellDelDup Coriell CNVs bed 9 + Coriell Cell Line Copy Number Variants 0 100 0 0 0 127 127 127 0 0 0 http://ccr.coriell.org/Sections/Search/Search.aspx?q=$$

Description

\

\ The Coriell Cell Line Copy Number Variants track displays\ copy-number variants (CNVs) in chromosomal aberration and inherited disorder\ cell lines in the NIGMS Human Genetic Cell Repository. The Repository,\ sponsored by the National Institute of General Medical Sciences, provides\ scientists around the world with resources for cell and genetic research.\ The samples include highly characterized cell lines and high quality DNA.\ NIGMS Repository samples represent a variety of disease states, chromosomal\ abnormalities, apparently healthy individuals and many distinct human\ populations.\

\ \

\ Approximately 1000 samples from the Chromosomal Aberrations and Heritable\ Diseases collections of the NIGMS Repository were genotyped on the Affymetrix\ Genome-Wide Human SNP 6.0 Array and analyzed for CNVs at the Coriell Institute\ for Medical Research. Genotyping data for many of these samples is available\ through dbGaP.\

\ \

\ The genotyped samples represent a diverse set of copy-number variants. The\ selection was weighted to over-sample commonly manifested types of aberrations.\ Karyotyping was performed on all NIGMS Repository cell lines that were\ submitted with reported chromosome abnormalities. When available, the ISCN\ description of the sample, based on G-banding and FISH analysis, is included\ in the phenotypic data. Karyotypes for these cells can be viewed in the\ online Repository catalog.\

\ \

\ Field definitions for an item description:\

    \
  • CN State: Copy Number of the imbalance. Note that all CNVs with\ a copy number of 2 are colored neutral (black) and occur on the sex\ chromosomes, where a CN State of 2 should not be interpreted\ as normal, as it would be on an autosome.
    • \
  • Cell Type: Type of cell culture; one of the following:\ B Lymphocyte, Fibroblast, Amniotic fluid-derived cell line or\ Chorionic villus-derived cell line.
    • \
  • Description (Diagnosis): May be a medical diagnosis,\ such as "albinism" or a chromosomal phenotype, such as\ "translocation" or other description.
    • \
  • ISCN nomenclature: A description of the chromosomal\ karyotype in formal ISCN nomenclature.
    • \
\ \

\ CN State item coloring:\

    \
  • CN State 0 == score 0
    • \
  • CN State 1 == score 100
    • \
  • CN State 2 == score 200
    • \
  • CN State 3 == score 300
    • \
  • CN State 4 == score 400
    • \
\ \ Use the score filter limits on the configuration page\ to select desired CN States.\

\ \

Credits

\

\ We thank Dorit Berlin and Zhenya Tang of the NIGMS Human Genetic Cell\ Repository at the\ Coriell Institute for Medical\ Research for these data.\

\ \

References

\

\ NCBI dbGaP:\ \ Genotyping NIGMS Chromosomal Aberration and Inherited Disorder Samples.\ \
\ NIGMS Human Genetic Cell Repository\ online catalog at the Coriell Institute for Medical Research.\ \

\ phenDis 1 exonArrows off\ group phenDis\ itemRgb on\ longLabel Coriell Cell Line Copy Number Variants\ scoreFilterByRange on\ shortLabel Coriell CNVs\ track coriellDelDup\ type bed 9 +\ url http://ccr.coriell.org/Sections/Search/Search.aspx?q=$$\ urlLabel Coriell details:\ visibility hide\ cosmicRegions COSMIC Regions bigBed 8 + Catalogue of Somatic Mutations in Cancer V82 0 100 200 0 0 227 127 127 0 0 0 http://cancer.sanger.ac.uk/cosmic/mutation/overview?id=$$

Description

\

COSMIC, \ the "Catalogue Of Somatic Mutations In Cancer," is an online database of somatic mutations found in \ human cancer. Focused exclusively on non-inherited acquired mutations, COSMIC combines information \ from a range of sources, curating the described relationships between cancer phenotypes and gene \ (and genomic) mutations. These data are then made available in a number of ways including here in the \ UCSC genome browser, on the COSMIC website with custom analytical tools, or via the\ COSMIC sftp server.\ Publications using COSMIC as a data source may cite our reference below.

\ \

Methods

\

\

The data in COSMIC are curated from a number of high-quality sources and combined into a single\ resource. The sources include:

\ \ \ \

Information on known cancer genes, selected from the \ Cancer Gene Census is curated manually to maximize its descriptive content. \ \

\ The data was downloaded from the COSMIC sftp server. It was first converted to a bed file using\ the UCSC utility cosmicToBed, then converted into a bigBed file using the UCSC utility bedToBigBed.\ The bigBed file is used to generate the track. \

\ \

Display

\
    \
  • Dense - Indicate the positions where COSMIC mutations have been annotated in a single horizontal\ track.
    • \
  • Squish - Indicate each mutation, in vertical pileups where appropriate, while minimizing \ screen space used.
    • \
  • Pack - Indicate each mutation with COSMIC identifier (COSMnnnnn).
    • \
  • Full - Show each mutation in detail, one per line, with COSM identifier (COSMnnnnn).
    • \
\ \

Data Access

\

\ Due to licensed material, we do not allow downloads or Table Browser access for the bigBed data. The\ raw data underlying this track can be explored and downloaded via the COSMIC \ website. The\ CosmicMutantExport.tsv.gz file was converted to a BED file using the cosmicToBed\ utility, and then converted into a bigBed file using the bedToBigBed utility. You can\ download these tools from the\ utilities directory.\

\ \

Contacts

\

For further information on COSMIC, or for help with the information provided, please contact\ \ cosmic@sanger.\ ac.\ uk.\

\ \

References

\

\ Forbes SA, Beare D, Boutselakis H, Bamford S, Bindal N, Tate J, Cole CG, Ward S, Dawson E, Ponting L\ et al.\ \ COSMIC: somatic cancer genetics at high-resolution.\ Nucleic Acids Res. 2017 Jan 4;45(D1):D777-D783.\ PMID: 27899578; PMC: PMC5210583\

\ phenDis 1 bigDataUrl /gbdb/hg19/cosmic/cosMutHg19V82.bb\ color 200, 0, 0\ group phenDis\ html cosmicRegions\ labelFields cosmLabel\ longLabel Catalogue of Somatic Mutations in Cancer V82\ maxItems 2000\ mouseOverField _mouseOver\ noScoreFilter on\ searchIndex name,cosmLabel\ shortLabel COSMIC Regions\ tableBrowser off\ track cosmicRegions\ type bigBed 8 +\ url http://cancer.sanger.ac.uk/cosmic/mutation/overview?id=$$\ urlLabel COSMIC ID:\ iscaViewTotal Coverage (Graphical) bedGraph 4 Clinical Genome Resource (ClinGen) CNVs 2 100 0 0 0 127 127 127 0 0 0 phenDis 0 alwaysZero on\ longLabel Clinical Genome Resource (ClinGen) CNVs\ maxHeightPixels 128:57:16\ parent iscaComposite\ shortLabel Coverage (Graphical)\ track iscaViewTotal\ type bedGraph 4\ view cov\ viewLimits 0:100\ viewUi on\ visibility full\ cpgIslandSuper CpG Islands bed 4 + CpG Islands (Islands < 300 Bases are Light Green) 0 100 0 100 0 128 228 128 0 0 0

Description

\ \

CpG islands are associated with genes, particularly housekeeping\ genes, in vertebrates. CpG islands are typically common near\ transcription start sites and may be associated with promoter\ regions. Normally a C (cytosine) base followed immediately by a \ G (guanine) base (a CpG) is rare in\ vertebrate DNA because the Cs in such an arrangement tend to be\ methylated. This methylation helps distinguish the newly synthesized\ DNA strand from the parent strand, which aids in the final stages of\ DNA proofreading after duplication. However, over evolutionary time,\ methylated Cs tend to turn into Ts because of spontaneous\ deamination. The result is that CpGs are relatively rare unless\ there is selective pressure to keep them or a region is not methylated\ for some other reason, perhaps having to do with the regulation of gene\ expression. CpG islands are regions where CpGs are present at\ significantly higher levels than is typical for the genome as a whole.

\ \

\ The unmasked version of the track displays potential CpG islands\ that exist in repeat regions and would otherwise not be visible\ in the repeat masked version.\

\ \

\ By default, only the masked version of the track is displayed. To view the\ unmasked version, change the visibility settings in the track controls at\ the top of this page.\

\ \

Methods

\ \

CpG islands were predicted by searching the sequence one base at a\ time, scoring each dinucleotide (+17 for CG and -1 for others) and\ identifying maximally scoring segments. Each segment was then\ evaluated for the following criteria:\ \

    \ \
  • GC content of 50% or greater
    • \ \
  • length greater than 200 bp
    • \ \
  • ratio greater than 0.6 of observed number of CG dinucleotides to the expected number on the \ \ basis of the number of Gs and Cs in the segment
    • \
\

\

\ The entire genome sequence, masking areas included, was\ used for the construction of the track Unmasked CpG.\ The track CpG Islands is constructed on the sequence after\ all masked sequence is removed.\

\ \

The CpG count is the number of CG dinucleotides in the island. \ The Percentage CpG is the ratio of CpG nucleotide bases\ (twice the CpG count) to the length. The ratio of observed to expected \ CpG is calculated according to the formula (cited in \ Gardiner-Garden et al. (1987)):\ \ 

    Obs/Exp CpG = Number of CpG * N / (Number of C * Number of G)
\ \ where N = length of sequence.

\

\ The calculation of the track data is performed by the following command sequence:\ 

\
twoBitToFa assembly.2bit stdout | maskOutFa stdin hard stdout \\\
  | cpg_lh /dev/stdin 2> cpg_lh.err \\\
    |  awk '{$2 = $2 - 1; width = $3 - $2;  printf("%s\\t%d\\t%s\\t%s %s\\t%s\\t%s\\t%0.0f\\t%0.1f\\t%s\\t%s\\n", $1, $2, $3, $5, $6, width, $6, width*$7*0.01, 100.0*2*$6/width, $7, $9);}' \\\
     | sort -k1,1 -k2,2n > cpgIsland.bed\
\ The unmasked track data is constructed from\ twoBitToFa -noMask output for the twoBitToFa command.\

\ \

Data access

\

\ CpG islands and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator.\ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.

\

\ The source for the cpg_lh program can be obtained from\ src/utils/cpgIslandExt/.\ The cpg_lh program binary can be obtained from: http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/cpg_lh (choose "save file")\

\ \

Credits

\ \

This track was generated using a modification of a program developed by G. Miklem and L. Hillier \ (unpublished).

\ \

References

\ \

\ Gardiner-Garden M, Frommer M.\ \ CpG islands in vertebrate genomes.\ J Mol Biol. 1987 Jul 20;196(2):261-82.\ PMID: 3656447\

\ regulation 1 altColor 128,228,128\ color 0,100,0\ group regulation\ html cpgIslandSuper\ longLabel CpG Islands (Islands < 300 Bases are Light Green)\ shortLabel CpG Islands\ superTrack on\ track cpgIslandSuper\ type bed 4 +\ ucsfBrainMethylViewCG CpG score bed 3 UCSF Brain DNA Methylation 2 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel UCSF Brain DNA Methylation\ maxLimit 1000\ minLimit 0\ parent ucsfBrainMethyl\ shortLabel CpG score\ track ucsfBrainMethylViewCG\ view CG\ viewLimits 0:100\ visibility full\ wgEncodeMapabilityViewCRGMAP CRG GEM Alignability bed 3 Mappability or Uniqueness of Reference Genome from ENCODE 0 100 0 0 0 127 127 127 0 0 0 map 1 autoScale off\ canPack On\ longLabel Mappability or Uniqueness of Reference Genome from ENCODE\ maxHeightPixels 100:32:16\ parent wgEncodeMapability\ shortLabel CRG GEM Alignability\ track wgEncodeMapabilityViewCRGMAP\ view CRGMAP\ viewLimits 0:1\ visibility hide\ windowingFunction mean+whiskers\ crisprAllTargets CRISPR Targets bigBed 9 + CRISPR/Cas9 -NGG Targets, whole genome 0 100 0 0 0 127 127 127 0 0 0 http://crispor.tefor.net/crispor.py?org=$D&pos=$S:${&pam=NGG

Description

\ \

\ This track shows the DNA sequences targetable by CRISPR RNA guides using\ the Cas9 enzyme from S. pyogenes (PAM: NGG) over the entire\ human (hg19) genome. CRISPR target sites were annotated with\ predicted specificity (off-target effects) and predicted efficiency\ (on-target cleavage) by various\ algorithms through the tool CRISPOR. Sp-Cas9 usually cuts double-stranded DNA three or \ four base pairs 5' of the PAM site.\

\ \

Display Conventions and Configuration

\ \

\ The track "CRISPR Targets" shows all potential -NGG target sites across the genome.\ The target sequence of the guide is shown with a thick (exon) bar. The PAM\ motif match (NGG) is shown with a thinner bar. Guides\ are colored to reflect both predicted specificity and efficiency. Specificity\ reflects the "uniqueness" of a 20mer sequence in the genome; the less unique a\ sequence is, the more likely it is to cleave other locations of the genome\ (off-target effects). Efficiency is the frequency of cleavage at the target\ site (on-target efficiency).

\ \

Shades of gray stand for sites that are hard to target specifically, as the\ 20mer is not very unique in the genome:

\ \ \ \ \
impossible to target: target site has at least one identical copy in the genome and was not scored
hard to target: many similar sequences in the genome that alignment stopped, repeat?
hard to target: target site was aligned but results in a low specificity score <= 50 (see below)
\ \

Colors highlight targets that are specific in the genome (MIT specificity > 50) but have different predicted efficiencies:

\ \ \ \ \ \
unable to calculate Doench/Fusi 2016 efficiency score
low predicted cleavage: Doench/Fusi 2016 Efficiency percentile <= 30
medium predicted cleavage: Doench/Fusi 2016 Efficiency percentile > 30 and < 55
high predicted cleavage: Doench/Fusi 2016 Efficiency > 55

\ \

\ Mouse-over a target site to show predicted specificity and efficiency scores:
\

    \
  1. The MIT Specificity score summarizes all off-targets into a single number from\ 0-100. The higher the number, the fewer off-target effects are expected. We\ recommend guides with an MIT specificity > 50.
    2. \
  2. The efficiency score tries to predict if a guide leads to rather strong or\ weak cleavage. According to (Haeussler et al. 2016), the \ Doench 2016 Efficiency score should be used to select the guide with the highest\ cleavage efficiency when expressing guides from RNA PolIII Promoters such as\ U6. Scores are given as percentiles, e.g. "70%" means that 70% of mammalian\ guides have a score equal or lower than this guide. The raw score number is\ also shown in parentheses after the percentile.
    3. \
  3. The Moreno-Mateos 2015 Efficiency\ score should be used instead of the Doench 2016 score when transcribing the\ guide in vitro with a T7 promoter, e.g. for injections in mouse, zebrafish or\ Xenopus embryos. The Moreno-Mateos score is given in percentiles and the raw value in parentheses,\ see the note above.
\

\ \

Click onto features to show all scores and predicted off-targets with up to\ four mismatches. The Out-of-Frame score by Bae et al. 2014\ is correlated with\ the probability that mutations induced by the guide RNA will disrupt the open\ reading frame. The authors recommend out-of-frame scores > 66 to create\ knock-outs with a single guide efficiently.

\ \

Off-target sites are sorted by the CFD (Cutting Frequency Determination)\ score (Doench et al. 2016).\ The higher the CFD score, the more likely there is off-target cleavage at that site.\ Off-targets with a CFD score < 0.023 are not shown on this page, but are available when\ following the link to the external CRISPOR tool.\ When compared against experimentally validated off-targets by\ Haeussler et al. 2016, the large majority of predicted\ off-targets with CFD scores < 0.023 were false-positives. For storage and performance\ reasons, on the level of individual off-targets, only CFD scores are available.

\ \

Methods

\ \

Relationship between predictions and experimental data

\ \

\ Like most algorithms, the MIT specificity score is not always a perfect\ predictor of off-target effects. Despite low scores, many tested guides\ caused few and/or weak off-target cleavage when tested with whole-genome assays\ (Figure 2 from Haeussler\ et al. 2016), as shown below, and the published data contains few data points\ with high specificity scores. Overall though, the assays showed that the higher\ the specificity score, the lower the off-target effects.

\ \ \ \

Similarly, efficiency scoring is not very accurate: guides with low\ scores can be efficient and vice versa. As a general rule, however, the higher\ the score, the less likely that a guide is very inefficient. The\ following histograms illustrate, for each type of score, how the share of\ inefficient guides drops with increasing efficiency scores:\

\ \ \ \

When reading this plot, keep in mind that both scores were evaluated on\ their own training data. Especially for the Moreno-Mateos score, the\ results are too optimistic, due to overfitting. When evaluated on independent\ datasets, the correlation of the prediction with other assays was around 25%\ lower, see Haeussler et al. 2016. At the time of\ writing, there is no independent dataset available yet to determine the\ Moreno-Mateos accuracy for each score percentile range.

\ \

Track methods

\

\ The entire human (hg19) genome was scanned for the -NGG motif. Flanking 20mer\ guide sequences were\ aligned to the genome with BWA and scored with MIT Specificity scores using the\ command-line version of crispor.org. Non-unique guide sequences were skipped.\ Flanking sequences were extracted from the genome and input for Crispor\ efficiency scoring, available from the Crispor downloads page, which\ includes the Doench 2016, Moreno-Mateos 2015 and Bae\ 2014 algorithms, among others.

\

\ Note that the Doench 2016 scores were updated by\ the Broad institute in 2017 ("Azimuth" update). As a result, earlier versions of\ the track show the old Doench 2016 scores and this version of the track shows new\ Doench 2016 scores. Old and new scores are almost identical, they are\ correlated to 0.99 and for more than 80% of the guides the difference is below 0.02.\ However, for very few guides, the difference can be bigger. In case of doubt, we recommend\ the new scores. Crispor.org can display both\ scores and many more with the "Show all scores" link.

\ \

Data Access

\

\ Positional data can be explored interactively with the \ Table\ Browser or the Data Integrator.\ For small programmatic positional queries, the track can be accessed using our \ REST API. For genome-wide data or \ automated analysis, CRISPR genome annotations can be downloaded from\ our download server\ as a bigBedFile.

\

\ The files for this track are called crispr.bb, which lists positions and\ scores, and crisprDetails.tab, which has information about off-target matches. Individual\ regions or whole genome annotations can be obtained using our tool bigBedToBed,\ which can be compiled from the source code or downloaded as a pre-compiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here. The tool\ can also be used to obtain only features within a given range, e.g.

\

\ bigBedToBed\ http://hgdownload.soe.ucsc.edu/gbdb/hg19/crisprAllTargets/crispr.bb -chrom=chr21\ -start=0 -end=1000000 stdout

\ \

Credits

\ \

\ Track created by Maximilian Haeussler, with helpful input\ from Jean-Paul Concordet (MNHN Paris) and Alberto Stolfi (NYU).\

\ \

References

\ \

\ Haeussler M, Schönig K, Eckert H, Eschstruth A, Mianné J, Renaud JB, Schneider-Maunoury S,\ Shkumatava A, Teboul L, Kent J et al.\ Evaluation of off-target and on-target scoring algorithms and integration into the\ guide RNA selection tool CRISPOR.\ Genome Biol. 2016 Jul 5;17(1):148.\ PMID: 27380939; PMC: PMC4934014\

\ \

\ Bae S, Kweon J, Kim HS, Kim JS.\ \ Microhomology-based choice of Cas9 nuclease target sites.\ Nat Methods. 2014 Jul;11(7):705-6.\ PMID: 24972169\

\ \

\ Doench JG, Fusi N, Sullender M, Hegde M, Vaimberg EW, Donovan KF, Smith I, Tothova Z, Wilen C,\ Orchard R et al.\ \ Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9.\ Nat Biotechnol. 2016 Feb;34(2):184-91.\ PMID: 26780180; PMC: PMC4744125\

\ \

\ Hsu PD, Scott DA, Weinstein JA, Ran FA, Konermann S, Agarwala V, Li Y, Fine EJ, Wu X, Shalem O\ et al.\ \ DNA targeting specificity of RNA-guided Cas9 nucleases.\ Nat Biotechnol. 2013 Sep;31(9):827-32.\ PMID: 23873081; PMC: PMC3969858\

\ \

\ Moreno-Mateos MA, Vejnar CE, Beaudoin JD, Fernandez JP, Mis EK, Khokha MK, Giraldez AJ.\ \ CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo.\ Nat Methods. 2015 Oct;12(10):982-8.\ PMID: 26322839; PMC: PMC4589495\

\ genes 1 bigDataUrl /gbdb/hg19/crisprAll/crispr.bb\ denseCoverage 0\ detailsTabUrls _offset=/gbdb/$db/crisprAll/crisprDetails.tab\ group genes\ html crisprAll\ itemRgb on\ longLabel CRISPR/Cas9 -NGG Targets, whole genome\ mouseOverField _mouseOver\ noGenomeReason This track is too big for whole-genome Table Browser access, it would lead to a timeout in your internet browser. Small regional queries can work, but large regions, such as entire chromosomes, will fail. Please see the CRISPR Track documentation, the section "Data Access", for bulk-download options and remote access via the bedToBigBed tool. API access should always work. Contact us if you encounter difficulties with accessing the data.\ scoreFilterMax 100\ scoreLabel MIT Guide Specificity Score\ shortLabel CRISPR Targets\ tableBrowser tbNoGenome\ track crisprAllTargets\ type bigBed 9 +\ url http://crispor.tefor.net/crispor.py?org=$D&pos=$S:${&pam=NGG\ urlLabel Click here to show this guide on Crispor.org, with expression oligos, validation primers and more\ visibility hide\ wgEncodeCshlLongRnaSeq CSHL Long RNA-seq bed 3 Long RNA-seq from ENCODE/Cold Spring Harbor Lab 1 100 0 0 0 127 127 127 0 0 0

Description

\ \

These tracks were generated by the \ ENCODE\ Consortium. They contain information about human RNAs greater than 200\ nucleotides in length that were obtained as short reads from the Illumina GAIIx\ platform. Data are available from biological replicates of several\ cell lines. In addition to profiling Poly-A+ and Poly-A- RNA from\ whole cells, there are also data from various subcellular\ compartments. In many cases, there are Cap Analysis of Gene\ Expression (CAGE, see the\ RIKEN CAGE Loc track),\ Small RNA-seq (less than 200 nucleotides, see the\ CSHL Sm RNA-seq track) and Pair-End\ di-TAG-RNA (PET-RNA, see the\ GIS RNA PET track) datasets available from the same biological replicates. \ \

Display Conventions and Configuration

\ \

\ This track is a multi-view composite track that contains multiple data types\ (views). For each view, there are multiple subtracks that\ display individually on the browser. Instructions for configuring multi-view\ tracks are\ here.

\ \

To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ \

Color differences among the views are arbitrary. They provide a\ visual cue for\ distinguishing between the different cell types and compartments.

\ \
\
Contigs\
The Contigs represent blocks of overlapping mapped reads from the pooled biological\ replicates. Specific column specifications can be found in the\ supplemental directory.\
Signals\
The Plus Signal and Minus Signal views show the density of mapped reads on the plus and minus strands (wiggle format), respectively.\
\
Alignments\
The Alignments view shows individual reads mapped from biological replicates to the genome\ and indicates where bases may mismatch. Every mapped read is displayed, i.e. uncollapsed.\ The alignment file follows the standard SAM format. See the\ SAM Format Specification\ for more information on the SAM/BAM file format. \
\
Splice Junctions\
Subset of aligned reads that cross splice junctions. Specific column specifications can be found in the supplemental directory.\
\
\

Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

\ \

\ \ Additional views are available on the downloads page. \

\ \

Methods

\ \

Cell Culture

\

Cells were grown according to the approved \ ENCODE\ cell culture protocols. \

\ \

Library Preparation

\

The published \ \ cDNA sequencing protocol was used. This protocol generates directional libraries\ and reports the transcripts' strand of origin. Exogenous RNA spike-ins\ were added to each endogenous RNA isolate and carried\ through library construction and sequencing. The Illumina PhiX\ control library was also spiked-in at 1% to each completed human\ library just prior to cluster formation.\ Accompanying each RNA-seq dataset is a\ Protocol document available for download as a PDF. This document contains details\ about the RNA isolations and treatments, library construction,\ spike-ins as well as quality control figures for individual libraries. \ The spike-in sequence and the concentrations are available for download\ in the supplemental directory.\

\ \

Sequencing and Mapping

\

The libraries were sequenced on the Illumina GAIIx platform\ as paired-ends for 76 or 101 cycles for each read.\ The average depth of sequencing was ~200 million reads \ (100 million paired-ends). \ The data were mapped against hg19 using Spliced Transcript Alignment\ and Reconstruction (STAR) written by Alex Dobin (CSHL). More\ information about STAR, including the parameters used for these data,\ is available from the\ Gingeras lab.\

\ \

\ For each experiment there are additional \ element data views\ data files available for download.\ These elements were assessed for reproducibility using a nonparametric \ irreproducible detection (IDR) rate script. The IDR values for each element\ are included in the files for end-users to use as a threshold. An IDR value of 0.1 means\ that the probability of detecting that element in a third experiment equivalent \ in depth to the sum of the bioreplicates is 90%. In addition,\ expression values for annotated genes, transcripts and exons were computed. Further explanation of these \ files is available for download in the\ supplemental directory.\

\ \

Verification

\ \

\ FPKM (fragments per kilobase of exon per million fragments mapped) values were calculated \ for annotated Gencode exons and Spearman values were compared. \ In general, Rho values are greater than .90 between biological replicates. \

\ \

Release Notes

\ \

\ This is release 3 (Sept 2012) of this track for hg19. It has no new experiments, but has \ additional files for many experiments. The hMNC-CB experiment has been revoked. The\ doubly compressed spike-ins files have been uncompressed. \ The hMNC-PB experiment has been replaced with improved depth.\ The current downloadable elements files (Transcripts, Genes and Exons) were generated \ using GENCODE V10, while the older datasets were generated using GENCODE V7. \ The "view" metadata will specify V7 or V10 for these files.\

\ \

Errata

\

\ 6/6/2013 - CSHL reports that one lane of reads is missing from the SK-N-SH-RA fastq read2 file \ (wgEncodeCshlLongRnaSeqSknshraCellPapFastqRd2Rep1.fastq.gz).\

\ \

Credits

\ \

These data were generated and analyzed by the transcriptome group led by\ Tom Gingeras at\ Cold Spring Harbor Laboratories and the laboratory of Roderic Guigo at \ the \ Center for Genomic Regulation (CRG) in Barcelona.\ \

\ Contact: Carrie Davis \ \ \

References

\ \

\ Parkhomchuk D, Borodina T, Amstislavskiy V, Banaru M, Hallen L, Krobitsch S, Lehrach H, Soldatov A.\ \ Transcriptome analysis by strand-specific sequencing of complementary DNA.\ Nucleic Acids Res. 2009 Oct;37(18):e123.\

\ \

Publications

\ \

\ Cheng C, Alexander R, Min R, Leng J, Yip KY, Rozowsky J, Yan KK, Dong X, Djebali S, Ruan Y et\ al.\ \ Understanding transcriptional regulation by integrative analysis of transcription factor binding\ data.\ Genome Res. 2012 Sep;22(9):1658-67.\

\ \

\ Deng X, Hiatt JB, Nguyen DK, Ercan S, Sturgill D, Hillier LW, Schlesinger F, Davis CA, Reinke VJ, Gingeras TR et al.\ \ Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster.\ Nat Genet. 2011 Oct 23;43(12):1179-85.\

\ \

\ Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A,\ Knowles DG et al.\ \ The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution,\ and expression.\ Genome Res. 2012 Sep;22(9):1775-89.\

\ \

\ Dong X, Greven MC, Kundaje A, Djebali S, Brown JB, Cheng C, Gingeras TR, Gerstein M, Guigó R,\ Birney E et al.\ \ Modeling gene expression using chromatin features in various cellular contexts.\ Genome Biol. 2012 Sep 5;13(9):R53.\

\ \

\ ENCODE Project Consortium, Bernstein BE, Birney E, Dunham I, Green ED, Gunter C, Snyder M.\ \ An integrated encyclopedia of DNA elements in the human genome.\ Nature. 2012 Sep 6;489(7414):57-74.\

\ \ \

\ Jiang L, Schlesinger F, Davis CA, Zhang Y, Li R, Salit M, Gingeras TR, Oliver B.\ \ Synthetic spike-in standards for RNA-seq experiments.\ Genome Res. 2011 Sep;21(9):1543-51.\

\ \ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

\ expression 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell localization=localization rnaExtract=rnaExtract\ dimensionZchecked PAP,PAM,TOTAL\ dimensions dimensionY=cellType dimensionX=localization dimensionZ=rnaExtract dimensionA=rank\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line localization=Localization rnaExtract=RNA
Extract view=View replicate=Lab
Replicate bioRep=Cross_Lab
BioReplicate labExpId=Lab
Exp_ID dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession seqPlatform=Platform fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ filterComposite dimZ=all dimA=all\ group expression\ html wgEncodeCshlLongRnaSeq.release3\ longLabel Long RNA-seq from ENCODE/Cold Spring Harbor Lab\ noInherit on\ priority 0\ shortLabel CSHL Long RNA-seq\ sortOrder cellType=+ localization=+ rnaExtract=+ view=+ rank=+\ subGroup1 view Views Contigs=Contigs PlusSignal=Plus_Signal MinusSignal=Minus_Signal Junctions=Splice_Junctions Alignments=Alignments\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2A549=A549 (Tier_2) t2BCELLSCD20=B_cells_CD20+ (Tier_2) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2IMR90=IMR90 (Tier_2) t2MCF7=MCF-7 (Tier_2) t2MONOCYTESCD14=Monocytes_CD14+ (Tier_2) t2SKNSH=SK-N-SH (Tier_2) t3AG04450=AG04450 t3BJ=BJ t3CD34MOBILIZED=CD34+_Mobilized t3HAOAF=HAoAF t3HAOEC=HAoEC t3HCH=HCH t3HFDPC=HFDPC t3HMEC=HMEC t3HMEPC=HMEpC t3HMNCCB=hMNC-CB t3HMNCPB=hMNC-PB t3HMSCAT=hMSC-AT t3HMSCBM=hMSC-BM t3HMSCUC=hMSC-UC t3HOB=HOB t3HPCPL=HPC-PL t3HPIEPC=HPIEpC t3HSAVEC=HSaVEC t3HSMM=HSMM t3HVMF=HVMF t3HWP=HWP t3NHDF=NHDF t3NHEK=NHEK t3NHEMFM2=NHEM.f_M2 t3NHEMM2=NHEM_M2 t3NHLF=NHLF t3SKMC=SkMC t3SKNSHRA=SK-N-SH_RA\ subGroup3 localization Localization CELL=Whole_Cell CHROMATIN=Chromatin CYTOSOL=Cytosol NUCLEOLUS=Nucleolus NUCLEOPLASM=Nucleoplasm NUCLEUS=Nucleus POLYSOME=Polysome\ subGroup4 rnaExtract RNA_Extract PAP=PolyA+ PAM=PolyA- TOTAL=Total_RNA\ subGroup5 rep Rep rep1=1 rep2=2 rep3=3 rep4=4 Pooled=Pooled\ subGroup6 rank Replicate_rank rank1=1st rank2=2nd none=Pooled\ superTrack wgEncodeRnaSeqSuper dense\ track wgEncodeCshlLongRnaSeq\ type bed 3\ dbSnpArchive dbSNP Archive bed 6 + dbSNP Track Archive 0 100 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This composite track contains information about single nucleotide polymorphisms (SNPs)\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP, available from\ ftp.ncbi.nih.gov/snp.\ You can click into each track for a version/subset-specific description.

\

\ This collection includes numbered versions of the entire dbSNP datasets\ (All SNP) as well as three tracks with subsets of the items in that version. \ Here is information on each of the subsets:\

    \
  • dbSNP 153: The dbSNP build 153 is composed of 5 subtracks. Click the track for\ a description of the subtracks.
    • \
  • Common SNPs: SNPs that have a minor allele frequency\ of at least 1% and are mapped to a single location in the reference\ genome assembly. Frequency data are not available for all SNPs,\ so this subset is incomplete.
    • \
  • Flagged SNPs: SNPs flagged as clinically associated by dbSNP, \ mapped to a single location in the reference genome assembly, and \ not known to have a minor allele frequency of at least 1%.\ Frequency data are not available for all SNPs, so this subset may\ include some SNPs whose true minor allele frequency is 1% or greater.
    • \
  • Mult. SNPs: SNPs that have been mapped to multiple locations\ in the reference genome assembly.
    • \
\

\

\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic \ locations will be omitted from display. When a SNP's flanking sequences \ map to multiple locations in the reference genome, it calls into question \ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\
    \ \
  • \ \ Class: Describes the observed alleles
    \
      \
    • Single - single nucleotide variation: all observed alleles are single nucleotides\ \ (can have 2, 3 or 4 alleles)
      • \
    • In-del - insertion/deletion
      • \
    • Heterozygous - heterozygous (undetermined) variation: allele contains string '(heterozygous)'
      • \
    • Microsatellite - the observed allele from dbSNP is a variation in counts of short tandem repeats
      • \
    • Named - the observed allele from dbSNP is given as a text name instead of raw sequence, e.g., (Alu)/-
      • \
    • No Variation - the submission reports an invariant region in the surveyed sequence
      • \
    • Mixed - the cluster contains submissions from multiple classes
      • \
    • Multiple Nucleotide Polymorphism (MNP) - the alleles are all of the same length, and length > 1
      • \
    • Insertion - the polymorphism is an insertion relative to the reference assembly
      • \
    • Deletion - the polymorphism is a deletion relative to the reference assembly
      • \
    • Unknown - no classification provided by data contributor
      • \
    \
    • \ \ \
  • \ \ Validation: Method used to validate\ \ the variant (each variant may be validated by more than one method)
    \
      \
    • By Frequency - at least one submitted SNP in cluster has frequency data submitted
      • \
    • By Cluster - cluster has at least 2 submissions, with at least one submission assayed with a non-computational method
      • \
    • By Submitter - at least one submitter SNP in cluster was validated by independent assay
      • \
    • By 2 Hit/2 Allele - all alleles have been observed in at least 2 chromosomes
      • \
    • By HapMap (human only) - submitted by\ HapMap project
      • \
    • By 1000Genomes (human only) - submitted by\ \ 1000Genomes project
      • \
    • Unknown - no validation has been reported for this variant
      • \
    \
    • \
  • \ \ Function: dbSNP's predicted functional effect of variant on RefSeq transcripts,\ both curated (NM_* and NR_*) as in the RefSeq Genes track and predicted (XM_* and XR_*),\ not shown in UCSC Genome Browser.\ A variant may have more than one functional role if it overlaps\ multiple transcripts.\ These terms and definitions are from the Sequence Ontology (SO); click on a term to view it in the\ MISO Sequence Ontology Browser.
    \
      \
    • Unknown - no functional classification provided (possibly intergenic)
      • \
    • synonymous_variant -\ \ A sequence variant where there is no resulting change to the encoded amino acid\ \ (dbSNP term: coding-synon)
      • \
    • intron_variant -\ \ A transcript variant occurring within an intron\ \ (dbSNP term: intron)
      • \
    • downstream_gene_variant -\ \ A sequence variant located 3' of a gene\ \ (dbSNP term: near-gene-3)
      • \
    • upstream_gene_variant -\ \ A sequence variant located 5' of a gene\ \ (dbSNP term: near-gene-5)
      • \
    • nc_transcript_variant -\ \ A transcript variant of a non coding RNA gene\ \ (dbSNP term: ncRNA)
      • \ \
    • stop_gained -\ \ A sequence variant whereby at least one base of a codon is changed, resulting in\ \ a premature stop codon, leading to a shortened transcript\ \ (dbSNP term: nonsense)
      • \
    • missense_variant -\ \ A sequence variant, where the change may be longer than 3 bases, and at least\ \ one base of a codon is changed resulting in a codon that encodes for a\ \ different amino acid\ \ (dbSNP term: missense)
      • \
    • stop_lost -\ \ A sequence variant where at least one base of the terminator codon (stop)\ \ is changed, resulting in an elongated transcript\ \ (dbSNP term: stop-loss)
      • \
    • frameshift_variant -\ \ A sequence variant which causes a disruption of the translational reading frame,\ \ because the number of nucleotides inserted or deleted is not a multiple of three\ \ (dbSNP term: frameshift)
      • \
    • inframe_indel -\ \ A coding sequence variant where the change does not alter the frame\ \ of the transcript\ \ (dbSNP term: cds-indel)
      • \
    • 3_prime_UTR_variant -\ \ A UTR variant of the 3' UTR\ \ (dbSNP term: untranslated-3)
      • \
    • 5_prime_UTR_variant -\ \ A UTR variant of the 5' UTR\ \ (dbSNP term: untranslated-5)
      • \
    • splice_acceptor_variant -\ \ A splice variant that changes the 2 base region at the 3' end of an intron\ \ (dbSNP term: splice-3)
      • \
    • splice_donor_variant -\ \ A splice variant that changes the 2 base region at the 5' end of an intron\ \ (dbSNP term: splice-5)
      • \
    \ In the Coloring Options section of the track controls page,\ function terms are grouped into several categories, shown here with default colors:\ \
    • \
  • \ \ Molecule Type: Sample used to find this variant
    \
      \
    • Genomic - variant discovered using a genomic template
      • \
    • cDNA - variant discovered using a cDNA template
      • \
    • Unknown - sample type not known
      • \
    \
    • \
  • \ \ Unusual Conditions (UCSC): UCSC checks for several anomalies \ that may indicate a problem with the mapping, and reports them in the \ Annotations section of the SNP details page if found:\
      \
    • AlleleFreqSumNot1 - Allele frequencies do not sum\ to 1.0 (+-0.01). This SNP's allele frequency data are\ \ probably incomplete.
      • \
    • DuplicateObserved,\ MixedObserved - Multiple distinct insertion SNPs have \ \ been mapped to this location, with either the same inserted \ \ sequence (Duplicate) or different inserted sequence (Mixed).
      • \
    • FlankMismatchGenomeEqual,\ \ FlankMismatchGenomeLonger,\ \ FlankMismatchGenomeShorter - NCBI's alignment of\ the flanking sequences had at least one mismatch or gap\ \ near the mapped SNP position.\ (UCSC's re-alignment of flanking sequences to the genome may\ be informative.)
      • \
    • MultipleAlignments - This SNP's flanking sequences \ align to more than one location in the reference assembly.
      • \
    • NamedDeletionZeroSpan - A deletion (from the\ genome) was observed but the annotation spans 0 bases.\ (UCSC's re-alignment of flanking sequences to the genome may\ be informative.)
      • \
    • NamedInsertionNonzeroSpan - An insertion (into the\ genome) was observed but the annotation spans more than 0\ bases. (UCSC's re-alignment of flanking sequences to the\ genome may be informative.)
      • \
    • NonIntegerChromCount - At least one allele\ frequency corresponds to a non-integer (+-0.010000) count of\ chromosomes on which the allele was observed. The reported\ total sample count for this SNP is probably incorrect.
      • \
    • ObservedContainsIupac - At least one observed allele \ from dbSNP contains an IUPAC ambiguous base (e.g., R, Y, N).
      • \
    • ObservedMismatch - UCSC reference allele does not\ match any observed allele from dbSNP. This is tested only\ \ for SNPs whose class is single, in-del, insertion, deletion,\ \ mnp or mixed.
      • \
    • ObservedTooLong - Observed allele not given (length\ too long).
      • \
    • ObservedWrongFormat - Observed allele(s) from dbSNP\ have unexpected format for the given class.
      • \
    • RefAlleleMismatch - The reference allele from dbSNP\ does not match the UCSC reference allele, i.e., the bases in\ \ the mapped position range.
      • \
    • RefAlleleRevComp - The reference allele from dbSNP\ matches the reverse complement of the UCSC reference\ allele.
      • \
    • SingleClassLongerSpan - All observed alleles are\ single-base, but the annotation spans more than 1 base.\ (UCSC's re-alignment of flanking sequences to the genome may\ be informative.)
      • \
    • SingleClassZeroSpan - All observed alleles are\ single-base, but the annotation spans 0 bases. (UCSC's\ re-alignment of flanking sequences to the genome may be\ informative.)
      • \
    \ Another condition, which does not necessarily imply any problem,\ is noted:\
      \
    • SingleClassTriAllelic, SingleClassQuadAllelic - \ Class is single and three or four different bases have been\ \ observed (usually there are only two).
      • \
    \
    • \
  • \ \ Miscellaneous Attributes (dbSNP): several properties extracted\ from dbSNP's SNP_bitfield table\ (see dbSNP_BitField_v5.pdf for details)\
      \
    • Clinically Associated (human only) - SNP is in OMIM and/or at \ \ least one submitter is a Locus-Specific Database. This does\ \ not necessarily imply that the variant causes any disease,\ \ only that it has been observed in clinical studies.
      • \
    • Appears in OMIM/OMIA - SNP is mentioned in \ \ Online Mendelian Inheritance in Man for \ \ human SNPs, or Online Mendelian Inheritance in Animals for \ \ non-human animal SNPs. Some of these SNPs are quite common,\ \ others are known to cause disease; see OMIM/OMIA for more\ \ information.
      • \
    • Has Microattribution/Third-Party Annotation - At least\ \ one of the SNP's submitters studied this SNP in a biomedical\ \ setting, but is not a Locus-Specific Database or OMIM/OMIA.
      • \
    • Submitted by Locus-Specific Database - At least one of\ \ the SNP's submitters is associated with a database of variants\ \ associated with a particular gene. These variants may or may\ \ not be known to be causative.
      • \
    • MAF >= 5% in Some Population - Minor Allele Frequency is \ \ at least 5% in at least one population assayed.
      • \
    • MAF >= 5% in All Populations - Minor Allele Frequency is \ \ at least 5% in all populations assayed.
      • \
    • Genotype Conflict - Quality check: different genotypes \ \ have been submitted for the same individual.
      • \
    • Ref SNP Cluster has Non-overlapping Alleles - Quality\ \ check: this reference SNP was clustered from submitted SNPs\ \ with non-overlapping sets of observed alleles.
      • \
    • Some Assembly's Allele Does Not Match Observed - \ \ Quality check: at least one assembly mapped by dbSNP has an allele\ at the mapped position that is not present in this SNP's observed\ alleles.
      • \
    \
    • \
\ Several other properties do not have coloring options, but do have \ some filtering options:\
    \
  • \ \ Average heterozygosity: Calculated by dbSNP as described in \ \ Computation of Average Heterozygosity and Standard Error for dbSNP RefSNP Clusters.\
      \
    • Average heterozygosity should not exceed 0.5 for bi-allelic \ single-base substitutions.
      • \
    \
    • \
  • \ \ Weight: Alignment quality assigned by dbSNP
    \
      \
    • Weight can be 0, 1, 2, 3 or 10.
      • \
    • Weight = 1 are the highest quality alignments.
      • \
    • Weight = 0 and weight = 10 are excluded from the data set.
      • \
    • A filter on maximum weight value is supported, which defaults to 1\ on all tracks except the Mult. SNPs track, which defaults to 3.
      • \
    \
    • \
  • \ \ Submitter handles: These are short, single-word identifiers of\ labs or consortia that submitted SNPs that were clustered into this\ reference SNP by dbSNP (e.g., 1000GENOMES, ENSEMBL, KWOK). Some SNPs\ have been observed by many different submitters, and some by only a\ single submitter (although that single submitter may have tested a\ large number of samples).\
    • \
  • \ \ AlleleFrequencies: Some submissions to dbSNP include \ allele frequencies and the study's sample size \ (i.e., the number of distinct chromosomes, which is two times the\ number of individuals assayed, a.k.a. 2N). dbSNP combines all\ available frequencies and counts from submitted SNPs that are \ clustered together into a reference SNP.\
    • \
\ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/database/\ (for human, organism_tax_id = human_9606;\ for mouse, organism_tax_id = mouse_10090).\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/rs_fasta/\

\
    \
  • Coordinates, orientation, location type and dbSNP reference allele data\ were obtained from files like b138_SNPContigLoc.bcp.gz and \ b138_ContigInfo.bcp.gz.
    • \
  • b138_SNPMapInfo.bcp.gz provides the alignment weights.\
  • Functional classification was obtained from files like \ b138_SNPContigLocusId.bcp.gz. The internal database representation\ uses dbSNP's function terms, but for display in SNP details pages,\ these are translated into\ Sequence Ontology terms.
    • \
  • Validation status and heterozygosity were obtained from SNP.bcp.gz.
    • \
  • SNPAlleleFreq.bcp.gz and ../shared/Allele.bcp.gz provided allele frequencies.\ For the human assembly, allele frequencies were also taken from\ SNPAlleleFreq_TGP.bcp.gz .
    • \
  • Submitter handles were extracted from Batch.bcp.gz, SubSNP.bcp.gz and \ SNPSubSNPLink.bcp.gz.
    • \
  • SNP_bitfield.bcp.gz provided miscellaneous properties annotated by dbSNP,\ such as clinically-associated. See the document \ dbSNP_BitField_v5.pdf for details.
    • \
  • The header lines in the rs_fasta files were used for molecule type,\ class and observed polymorphism.
    • \
\ \

Data Access

\

\ Note: It is not recommeneded to use LiftOver to convert SNPs between assemblies,\ and more information about how to convert SNPs between assemblies can be found on the following\ FAQ entry.

\

\ The raw data can be explored interactively with the \ Table Browser,\ Data Integrator, or \ Variant Annotation Integrator.\ For automated analysis, the genome annotation files can be downloaded in their entirety for \ hg38,\ hg19, \ and mm10 as\ (snp*.txt.gz). \ You can also make queries using the UCSC Genome Browser \ JSON API or \ public MySQL server. Please refer to our \ mailing list archives\ for questions and example queries, or our \ Data Access FAQ for more information.\

\ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

    \
  • class = 'single'
    • \
  • mapped position in the human reference genome is one base long
    • \
  • aligned to only one location in the human reference genome
    • \
  • not aligned to a chrN_random chrom
    • \
  • biallelic (not tri- or quad-allelic)
    • \
\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download in the\ genome's snp*Mask folder.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exlcude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ varRep 1 cartVersion 3\ group varRep\ html ../../dbSnpArchive\ longLabel dbSNP Track Archive\ maxWindowToDraw 10000000\ shortLabel dbSNP Archive\ superTrack on\ track dbSnpArchive\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ dbVarSv dbVar Common Struct Var NCBI Curated Common Structural Variants from dbVar 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ The tracks listed here contain data from the\ \ nstd186 (NCBI Curated Common Structural Variants) study. This is a collection of structural\ variants (SV) originally submitted to dbVar which are part of a study with at least 100 samples and\ have an allele frequency of >=0.01 in at least one population. The complete dataset is imported\ from these common-population studies:\

\ \

\ gnomAD Structural Variants\ (nstd166):\ Catalog of SVs detected from the sequencing of the complete genome of 10,847 unrelated\ individuals from the GnomAD v2.1 release.

\

\ 1000 Genomes Consortium Phase 3 Integrated SV\ (estd219):\ Structural variants of the 1000 Genomes project Phase 3 as reported in a separate article\ specifically dedicated to the analysis of SVs. Many of these data are identical to those reported\ in the estd214 study.

\

\ DECIPHER Common CNVs\ (nstd183):\ Consensus set of common population CNVs selected from high-resolution controls sets where frequency\ information is available.\

\ \

\ There are two tracks in this collection:\

\

\ \

Display Conventions

\

\ These tracks are multi-view composite tracks that contain multiple data types (views). Each view\ within a track has separate display controls, as described\ here. Some dbVar tracks\ contain multiple subtracks, corresponding to subsets of data. If a track contains many subtracks,\ only some subtracks will be displayed by default. The user can select which subtracks are displayed\ via the display controls on the track details page.\

\ \

Data Access

\

\ The raw data can be explored interactively with the\ Table Browser, or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API. \

The data can also be found directly from the dbVar \ nstd186 data access, as well as in the\ \ dbVar Track Hub, where additional subtracks are included. For questions about\ dbVar track data, please contact \ dbvar@ncbi.\ nlm.\ nih.\ gov.\ \

\ \

\ \

Credits

\

\ Thanks to the dbVAR team at NCBI, especially John Lopez and Timothy Hefferon for technical \ coordination and consultation, and to Christopher Lee, Anna Benet-Pages, and Daniel Schmelter of \ the Genome Browser team for engineering the track display.

\ \

References

\ \

\ Lappalainen I, Lopez J, Skipper L, Hefferon T, Spalding JD, Garner J, Chen C, Maguire M, Corbett M,\ Zhou G et al.\ \ DbVar and DGVa: public archives for genomic structural variation.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D936-41.\ PMID: 23193291; PMC: PMC3531204\

\ \ varRep 0 group varRep\ html dbVarCurated\ longLabel NCBI Curated Common Structural Variants from dbVar\ shortLabel dbVar Common Struct Var\ superTrack on\ track dbVarSv\ dbVar_common dbVar Common SV bigBed 9 + . NCBI dbVar Curated Common Structural Variants 3 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ This track displays common copy number genomic variations from nstd186 (NCBI Curated Common\ Structural Variants), divided into subtracks according to population and source of original\ submission.\

\ \

\ This curated dataset of all structural variants in dbVar includes variants from gnomAD, 1000\ Genomes Phase 3, and DECIPHER (dbVar studies\ nstd166,\ estd219, and\ nstd183, respectively).\

\ \

\ It only includes copy number gain, copy number loss, copy number variation, duplications, and\ deletions (including mobile element deletions), that are part of a study with at least 100 samples,\ include allele frequency data, and have an allele frequency of >=0.01 in at least one population.\

\ \

\ For more information on the number of variant calls and latest statistics for nstd186 see\ Summary of nstd186\ (NCBI Curated Common Structural Variants).\

\ \

\ There are six subtracks in this track set:\

\ \

\

    \
  • NCBI Curated Common SVs: African - \ Variants with AF >= 0.01 for \ African Population.
    • \
  • NCBI Curated Common SVs: European -\ Variants with AF >= 0.01 for \ European Population.
    • \
  • NCBI Curated Common SVs: all populations -\ Variants with AF >= 0.01 for \ Global Population.
    • \
  • NCBI Curated Common SVs: all populations from gnomAD - \ Variants with AF >= 0.01 from \ gnomAD Structural Variants.
    • \
  • NCBI Curated Common SVs: all populations from 1000 Genomes - \ Variants with AF >= 0.01 from \ 1000 Genomes Consortium Phase 3 Integrated SV.
    • \
  • NCBI Curated Common SVs: all populations from DECIPHER -\ Variants with AF >= 0.01 from \ DECIPHER Consensus CNVs.
    • \
\

\ \

Display Conventions and Configuration

\ Items in all subtracks follow the same conventions: items are colored by variant type, and are \ based on the dbVar colors described in the \ dbVar Overview page. \ Red for copy number loss or deletion,\ blue for copy number gain or duplication, and\ violet for copy number variation. \

\ \

\ Mouseover on items indicates genes affected, size, variant type, and allele frequencies (AF). \ All tracks can be filtered according to the Variant Size and Variant Type.\

\ \

Data Access

\ The raw data can be explored interactively with the\ Table Browser, or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API. \

\

The data can also be found directly from the dbVar \ nstd186 data access, as well as in the\ \ dbVar Track Hub, where additional subtracks are included. For questions about\ dbVar track data, please contact \ dbvar@ncbi.nlm.nih.gov\ .\ \

\ \ \

Credits

\

\ Thanks to the dbVAR team at NCBI, especially John Lopez and Timothy Hefferon for technical \ coordination and consultation, and to Christopher Lee, Anna Benet-Pages, and Daniel Schmelter, of \ the Genome Browser team for engineering the track display. \

\ \

References

\

\ Lappalainen I, Lopez J, Skipper L, Hefferon T, Spalding JD, Garner J, Chen C, Maguire M, Corbett M,\ Zhou G et al.\ \ DbVar and DGVa: public archives for genomic structural variation.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D936-41.\ PMID: 23193291; PMC: PMC3531204\

\ \ \ varRep 1 compositeTrack on\ filterLabel.length Variant Size\ filterLabel.type Variant Type\ filterValues.length Under 10KB,10KB to 100KB,100KB to 1MB,Over 1MB\ filterValues.type alu deletion,copy number gain,copy number loss,copy number variation,deletion,duplication,herv deletion,line1 deletion,sva deletion\ group varRep\ html dbVarCommon\ itemRgb on\ longLabel NCBI dbVar Curated Common Structural Variants\ mouseOverField label\ searchIndex name\ shortLabel dbVar Common SV\ superTrack dbVarSv pack\ track dbVar_common\ type bigBed 9 + .\ visibility pack\ dbVar_conflict dbVar Conflict SV bigBed 9 + . NCBI dbVar Curated Conflict Variants 3 100 0 0 0 127 127 127 0 0 0

Description

\ The track NCBI dbVar Curated Common SVs: Conflicts with Pathogenic highlights loci where\ common copy number variants from\ nstd186 (NCBI Curated \ Common Structural Variants) overlap with structural Variants with clinical assertions,\ submitted to ClinVar by external labs (Clinical Structural \ Variants - nstd102).\

\ \

\ Overlap in the track refers to reciprocal overlap between variants in the common\ (NCBI Curated Common Structural Variants) versus clinical (ClinVar Long Variants)\ tracks. Reciprocal overlap values can be anywhere from 10% to 100%.\

\ \

\ For more information on the number of variant calls and latest statistics for nstd186 see\ Summary of nstd186\ (NCBI Curated Common Structural Variants).\

\ \

Display Conventions and Configuration

\ \

\ Items in all subtracks follow the same conventions: items are colored by variant type, and are\ based on the dbVar colors described in the\ dbVar Overview page.\ Red for copy number loss or deletion,\ blue for copy number gain or duplication, and\ violet for copy number variation. \

\ \

\ Mouseover on items indicates genes affected, size, variant type, and allele frequencies (AF). \ All tracks can be filtered according to the variant length, variant type and \ variant overlap. This last filter defines four bins within that range from which the \ user can choose.\

\ \ \

Data Access

\ The raw data can be explored interactively with the\ Table Browser, or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API.

\ \

\ The data can also be found directly from the dbVar \ nstd186 data access, as well as in the\ \ dbVar Track Hub, where additional subtracks are included. For questions about\ dbVar track data, please contact \ dbvar@ncbi.\ nlm.\ nih.\ gov.\ \

\ \ Thanks to the dbVAR team at NCBI, especially John Lopez and Timothy Hefferon for technical \ coordination and consultation, and to Christopher Lee, Anna Benet-Pages, and Daniel Schmelter of \ the Genome Browser team for engineering the track display.\

\ \

References

\

\ Lappalainen I, Lopez J, Skipper L, Hefferon T, Spalding JD, Garner J, Chen C, Maguire M, Corbett M,\ Zhou G et al.\ \ DbVar and DGVa: public archives for genomic structural variation.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D936-41.\ PMID: 23193291; PMC: PMC3531204\

\ \ varRep 1 compositeTrack on\ filterLabel.length Variant Length\ filterLabel.overlap Variant Overlap\ filterLabel.type Variant Type\ filterValues.length Under 10KB,10KB to 100KB,100KB to 1MB,Over 1MB\ filterValues.overlap 10 to 25,25 to 50,50 to 75,75 to 90,90 to 100\ filterValues.type alu deletion,copy number gain,copy number loss,copy number variation,deletion,duplication,herv deletion,line1 deletion,sva deletion\ html dbVarConflict\ itemRgb on\ longLabel NCBI dbVar Curated Conflict Variants\ mouseOverField label\ searchIndex name\ shortLabel dbVar Conflict SV\ superTrack dbVarSv pack\ track dbVar_conflict\ type bigBed 9 + .\ visibility pack\ decipher DECIPHER CNVs bigBed 9 + DECIPHER CNVs (not updated anymore - use the hg38 track) 0 100 0 0 0 127 127 127 0 0 0 https://www.deciphergenomics.org/patient/$$

Description

\ \
\

NOTE:
\ Decipher is not updating hg19 anymore. This data is outdated. New Decipher data will not appear on hg19. Please use the hg38 track !\

\

To go to the corresponding location in hg38 now, go back to the chromosome\ view, click in the menu bar "View > In other Genomes" and select the hg38\ assembly.

\ \

Data Display Agreement Notice
\ These data are only available for display in the Browser, and not for bulk\ download. Access to bulk data may be obtained directly from DECIPHER\ (https://www.deciphergenomics.org/about/data-sharing) and is subject to a\ Data Access Agreement, in which the user certifies that no attempt to\ identify individual patients will be undertaken. The same restrictions\ apply to the public data displayed at UCSC in the UCSC Genome Browser;\ no one is authorized to attempt to identify patients by any means.\

\

These data are made available as soon as possible and may be a\ pre-publication release. For information on the proper use of DECIPHER\ data, please see https://www.deciphergenomics.org/about/data-sharing.\

\

The DECIPHER consortium provides these data in good faith as a research\ tool, but without verifying the accuracy, clinical validity, or utility of\ the data. The DECIPHER consortium makes no warranty, express or implied,\ nor assumes any legal liability or responsibility for any purpose for\ which the data are used.\

\
\ \

\ The \ DECIPHER\ database of submicroscopic chromosomal imbalance \ collects clinical information about chromosomal \ microdeletions/duplications/insertions, translocations and inversions, \ and displays this information on the human genome map.\

\ This track shows genomic regions of reported cases and their \ associated phenotype information. All data have passed the strict\ consent requirements of the DECIPHER project and are approved for\ unrestricted public release. Clicking the Patient View ID link\ brings up a more detailed informational page on the patient at the \ DECIPHER web site. \ \

Display Conventions and Configuration

\

\ The genomic locations of DECIPHER variants are labeled with the DECIPHER variant descriptions. \ Mouseover on items shows variant details, clinical interpretation, and associated conditions. \ Further information on each variant is displayed on the details page by a click onto any variant. \

\ \

\ For the CNVs track, the entries are colored by the type of variant:\

    \
  • red for loss
    • \
  • blue for gain
    • \
  • grey for amplification
    • \
\

\ \

\ A light-to-dark color gradient indicates the clinical significance of each variant, with \ the lightest shade being benign, to the darkest shade being pathogenic. Detailed information on the \ CNV color code is described here.\ Items can be filtered according to the size of the variant, variant type, and clinical significance \ using the track Configure options.\

\ \

\ For the SNVs track, the entries are colored according to the estimated clinical significance \ of the variant:\

    \
  • black for likely or definitely pathogenic
    • \
  • dark grey for uncertain or unknown
    • \
  • light grey for likely or definitely benign
    • \
\

\ \

Method

\

\ Data provided by the DECIPHER project group are imported and processed\ to create a simple BED track to annotate the genomic regions associated\ with individual patients.\

\ \ \

Contact

\

\ For more information on DECIPHER, please contact\ \ contact@deciphergenomics.\ org\

\ \

References

\

\ Firth HV, Richards SM, Bevan AP, Clayton S, Corpas M, Rajan D, Van Vooren S, Moreau Y, Pettett RM,\ Carter NP.\ \ DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.\ Am J Hum Genet. 2009 Apr;84(4):524-33.\ PMID: 19344873; PMC: PMC2667985\

\ phenDis 1 bigDataUrl /gbdb/hg19/decipher/decipherCnv.bb\ filter.size 0\ filterByRange.size on\ filterLimits.size 2:170487333\ filterValues.pathogenicity Benign,Likely Benign,Likely Pathogenic,Pathogenic,Uncertain,Unknown\ filterValues.variant_class Amplification,Copy-Number Gain,Deletion,Duplication,Duplication/Trip\ group phenDis\ html decipher.html\ itemRgb on\ longLabel DECIPHER CNVs (not updated anymore - use the hg38 track)\ mergeSpannedItems on\ mouseOverField _mouseOver\ pennantIcon snowflake.png https://www.deciphergenomics.org/about/faqs "This track on hg19 has been frozen in its current state and will receive no further updates. The hg38 version of this track is regularly updated to reflect the most recent DECIPHER release."\ searchIndex name\ shortLabel DECIPHER CNVs\ tableBrowser off knownCanonToDecipher knownToDecipher decipherRaw\ track decipher\ type bigBed 9 +\ url https://www.deciphergenomics.org/patient/$$\ urlLabel Decipher Patient View:\ visibility hide\ decipherSnvs DECIPHER SNVs bed 4 DECIPHER SNVs (not updated anymore - use the hg38 track) 0 100 0 0 0 127 127 127 0 0 0

Description

\ \
\

NOTE:
\ Decipher is not updating hg19 anymore. This data is outdated. New Decipher data will not appear on hg19. Please use the hg38 track !\

\

To go to the corresponding location in hg38 now, go back to the chromosome\ view, click in the menu bar "View > In other Genomes" and select the hg38\ assembly.

\ \

Data Display Agreement Notice
\ These data are only available for display in the Browser, and not for bulk\ download. Access to bulk data may be obtained directly from DECIPHER\ (https://www.deciphergenomics.org/about/data-sharing) and is subject to a\ Data Access Agreement, in which the user certifies that no attempt to\ identify individual patients will be undertaken. The same restrictions\ apply to the public data displayed at UCSC in the UCSC Genome Browser;\ no one is authorized to attempt to identify patients by any means.\

\

These data are made available as soon as possible and may be a\ pre-publication release. For information on the proper use of DECIPHER\ data, please see https://www.deciphergenomics.org/about/data-sharing.\

\

The DECIPHER consortium provides these data in good faith as a research\ tool, but without verifying the accuracy, clinical validity, or utility of\ the data. The DECIPHER consortium makes no warranty, express or implied,\ nor assumes any legal liability or responsibility for any purpose for\ which the data are used.\

\
\ \

\ The \ DECIPHER\ database of submicroscopic chromosomal imbalance \ collects clinical information about chromosomal \ microdeletions/duplications/insertions, translocations and inversions, \ and displays this information on the human genome map.\

\ This track shows genomic regions of reported cases and their \ associated phenotype information. All data have passed the strict\ consent requirements of the DECIPHER project and are approved for\ unrestricted public release. Clicking the Patient View ID link\ brings up a more detailed informational page on the patient at the \ DECIPHER web site. \ \

Display Conventions and Configuration

\

\ The genomic locations of DECIPHER variants are labeled with the DECIPHER variant descriptions. \ Mouseover on items shows variant details, clinical interpretation, and associated conditions. \ Further information on each variant is displayed on the details page by a click onto any variant. \

\ \

\ For the CNVs track, the entries are colored by the type of variant:\

    \
  • red for loss
    • \
  • blue for gain
    • \
  • grey for amplification
    • \
\

\ \

\ A light-to-dark color gradient indicates the clinical significance of each variant, with \ the lightest shade being benign, to the darkest shade being pathogenic. Detailed information on the \ CNV color code is described here.\ Items can be filtered according to the size of the variant, variant type, and clinical significance \ using the track Configure options.\

\ \

\ For the SNVs track, the entries are colored according to the estimated clinical significance \ of the variant:\

    \
  • black for likely or definitely pathogenic
    • \
  • dark grey for uncertain or unknown
    • \
  • light grey for likely or definitely benign
    • \
\

\ \

Method

\

\ Data provided by the DECIPHER project group are imported and processed\ to create a simple BED track to annotate the genomic regions associated\ with individual patients.\

\ \ \

Contact

\

\ For more information on DECIPHER, please contact\ \ contact@deciphergenomics.\ org\

\ \

References

\

\ Firth HV, Richards SM, Bevan AP, Clayton S, Corpas M, Rajan D, Van Vooren S, Moreau Y, Pettett RM,\ Carter NP.\ \ DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.\ Am J Hum Genet. 2009 Apr;84(4):524-33.\ PMID: 19344873; PMC: PMC2667985\

\ phenDis 1 color 0,0,0\ group phenDis\ html decipher.html\ longLabel DECIPHER SNVs (not updated anymore - use the hg38 track)\ nextExonText Right edge\ pennantIcon snowflake.png https://www.deciphergenomics.org/about/faqs "This track on hg19 has been frozen in its current state and will receive no further updates. The hg38 version of this track is regularly updated to reflect the most recent DECIPHER release."\ prevExonText Left edge\ shortLabel DECIPHER SNVs\ tableBrowser off decipherSnvsRaw\ track decipherSnvs\ type bed 4\ visibility hide\ decodeRmap deCODE Recomb bed 3 deCODE Recombination maps, 10Kb bin size, October 2010 0 100 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21,

Description

\ \

\ The deCODE recombination rate track represents calculated rates of\ recombination based on the deCODE recombination maps in 10 Kb bins\ from October 2010. Sex averaged-, female- and male-specific recombination\ rates can be displayed by choosing the appropriate options on the track\ visibility controls.\

\ \

\ Corresponding to each of these tracks are separate\ tracks for carriers and non-carriers of the PRDM9 14/15 composite\ allele which can be displayed as well. There are also tracks depicting\ the difference between male and female recombination rates, and a\ track showing recombination hotspots (i.e., bins with standardized\ recombination rates higher than 10).\

\ \

\ In addition to the deCODE display, three data tracks from the\ HapMap project\ are included. CEU, YRI and combined maps from release #24 can be\ turned on with the track visibility controls.\

\ \

Methods

\ \

\ The deCODE genetic map was created at \ deCODE Genetics and is \ based on 289,658 and 8,411 SNPs on the autosomal and X chromosomes, respectively,\ for 15,257 parent-offspring pairs. For more information on this map, see\ Kong, et al., 2010.\

\ \

\ Each base is assigned the recombination rate calculated by\ assuming a linear genetic distance across the immediately flanking\ genetic markers. The recombination rate assigned to each 10 Kb window\ is the average recombination rate of the bases contained within the\ window. The recombination rates are standardized, bringing the average\ to 1 for all bins used for the standardization.\

\ \

Credits

\ \

\ This track was produced at UCSC using data that are freely available for\ the deCODE genetic maps. Thanks to all who played a part in the\ creation of these maps.\

\ \

References

\

\ Kong A, Gudbjartsson DF, Sainz J, Jonsdottir GM, Gudjonsson SA, Richardsson B, Sigurdardottir S,\ Barnard J, Hallbeck B, Masson G et al.\ \ A high-resolution recombination map of the human genome.\ Nat Genet. 2002 Jul;31(3):241-7.\ PMID: 12053178\

\ \

\ Kong A, Thorleifsson G, Gudbjartsson DF, Masson G, Sigurdsson A, Jonasdottir A, Walters GB,\ Jonasdottir A, Gylfason A, Kristinsson KT et al.\ \ Fine-scale recombination rate differences between sexes, populations and individuals.\ Nature. 2010 Oct 28;467(7319):1099-103.\ PMID: 20981099\

\ map 1 chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21\ compositeTrack on\ group map\ longLabel deCODE Recombination maps, 10Kb bin size, October 2010\ maxHeightPixels 100:36:11\ noInherit on\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel deCODE Recomb\ subGroup1 view Views male=Male female=Female avg=Sex_Average diff=Sex_Difference hot=Hot_Spots other=Other_maps\ track decodeRmap\ type bed 3\ viewLimits 0:10\ visibility hide\ caddDel Deletions bigBed 9 + CADD 1.6 Score: Deletions - label is length of deletion 1 100 100 130 160 177 192 207 0 0 0

Description

\ \

This track collection shows Combined Annotation Dependent Depletion scores.\ CADD is a tool for scoring the deleteriousness of single nucleotide variants as\ well as insertion/deletion variants in the human genome.

\ \

\ Some mutation annotations\ tend to exploit a single information type (e.g., phastCons or phyloP for\ conservation) and/or are restricted in scope (e.g., to missense changes). Thus,\ a broadly applicable metric that objectively weights and integrates diverse\ information is needed. Combined Annotation Dependent Depletion (CADD) is a\ framework that integrates multiple annotations into one metric by contrasting\ variants that survived natural selection with simulated mutations.\

\ \

\ CADD scores strongly correlate with allelic diversity, pathogenicity of both\ coding and non-coding variants, experimentally measured regulatory effects,\ and also rank causal variants within individual genome sequences with a higher\ value than non-causal variants. \ Finally, CADD scores of complex trait-associated variants from genome-wide\ association studies (GWAS) are significantly higher than matched controls and\ correlate with study sample size, likely reflecting the increased accuracy of\ larger GWAS.\

\ \

\ A CADD score represents a ranking not a prediction, and no threshold is defined\ for a specific purpose. Higher scores are more likely to be deleterious: \ Scores are \ \ 

  10 * -log of the rank
\ \ so that variants with scores above 20 are \ predicted to be among the 1.0% most deleterious possible substitutions in \ the human genome. We recommend thinking carefully about what threshold is \ appropriate for your application.\

\ \

Display Conventions and Configuration

\

\ There are six subtracks of this track: four for single-nucleotide mutations,\ one for each base, showing all possible substitutions, \ one for insertions and one for deletions. All subtracks show the CADD Phred\ score on mouseover. Zooming in shows the exact score on mouseover, same\ basepair = score 0.0.

\

\ PHRED-scaled scores are normalized to all potential ~9 billion SNVs, and\ thereby provide an externally comparable unit for analysis. For example, a\ scaled score of 10 or greater indicates a raw score in the top 10% of all\ possible reference genome SNVs, and a score of 20 or greater indicates a raw\ score in the top 1%, regardless of the details of the annotation set, model\ parameters, etc.\

\

\ The four single-nucleotide mutation tracks have a default viewing range of\ score 10 to 50. As explained in the paragraph above, that results in\ slightly less than 10% of the data displayed. The \ deletion and insertion tracks have a default filter of 10-100, because they\ display discrete items and not graphical data.\

\ \

\ Single nucleotide variants (SNV): For SNVs, at every\ genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing \ the reference allele, e.g., A to A, is always set to zero.\

\

\ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and instead of an actual score, the tooltip text will show\ the average score of all nucleotides under the cursor. This is indicated by\ the prefix "~" in the mouseover. Averages of scores are not useful for any\ application of CADD.\

\ \

Insertions and deletions: Scores are also shown on mouseover for a\ set of insertions and deletions. On hg38, the set has been obtained from\ gnomAD3. On hg19, the set of indels has been obtained from various sources\ (gnomAD2, ExAC, 1000 Genomes, ESP). If your insertion or deleletion of interest\ is not in the track, you will need to use CADD's\ online scoring tool\ to obtain them.

\ \

Data access

\

\ CADD scores are freely available for all non-commercial applications from\ the CADD website.\ For commercial applications, see\ the license instructions there.\

\ \

\ The CADD data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ The files for this track are called a.bw, c.bw, g.bw, t.bw, ins.bb and del.bb. Individual\ regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\
\ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/cadd/a.bw stdout\
\ or\
\ bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/cadd/ins.bb stdout

\ \

Methods

\ \

\ Data were converted from the files provided on\ the CADD Downloads website,\ provided by the Kircher lab, using\ \ custom Python scripts, \ documented in our \ makeDoc files.\

\ \

Credits

\

\ Thanks to the CADD development team for providing precomputed data as simple tab-separated files.\

\ \

References

\

\ Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J.\ \ A general framework for estimating the relative pathogenicity of human genetic variants.\ Nat Genet. 2014 Mar;46(3):310-5.\ PMID: 24487276;\ PMC: PMC3992975\

\ \

\ Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M.\ \ CADD: predicting the deleteriousness of variants throughout the human genome.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894.\ PMID: 30371827;\ PMC: PMC6323892\

\ phenDis 1 bigDataUrl /gbdb/hg19/cadd/del.bb\ filter.score 10:100\ filterByRange.score on\ filterLabel.score Show only items with PHRED scale score of\ filterLimits.score 0:100\ html caddSuper\ longLabel CADD 1.6 Score: Deletions - label is length of deletion\ mouseOver Mutation: $change CADD Phred score: $phred\ parent caddSuper\ shortLabel Deletions\ track caddDel\ type bigBed 9 +\ visibility dense\ denisovaMethylation Denisova Methyl bed 9 Denisova Reconstructed DNA Methylation Map 0 100 0 0 0 127 127 127 0 0 0

Description

\ \ This track shows the reconstructed DNA methylation map of the Denisova genome,\ derived from bone tissues.\ \

Display conventions and configuration

\ Green to red scaling is used as a rough indicator of methylation.\ Values range from 0% (green, unmethylated) to 100% (red, methylated).\ Data are displayed for CpG positions across the genome.\ \

Methods

\ Gokhman et al. reconstructed the DNA methylation maps of two archaic humans,\ the Neandertal and the Denisovan, based on the natural deamination of cytosines\ in ancient DNA. With time, cytosines (C's) in post-mortem DNA lose their amine\ group (deamination). However, deamination of methylated vs. unmethylated C's\ results in different products - Methylated C's are deaminated with time to T's,\ whereas unmethylated C's are deaminated to U's.\ The U's are later removed during ancient DNA library preparation and as a result,\ a distinct pattern is observed: methylated regions in the genome display high C-->T\ conversion rate, whereas unmethylated regions display a low C-->T conversion rate.\ These patterns were used to reconstruct the full DNA methylation maps of the archaic humans.\ \

Credits

\ This track was produced at UCSC using data generated by Gokhman et al., 2014.\ \

References

\

\ Gokhman D, Lavi E, Prüfer K, Fraga MF, Riancho JA, Kelso J, Pääbo S, Meshorer E,\ Carmel L.\ \ Reconstructing the DNA methylation maps of the Neandertal and the Denisovan.\ Science. 2014 May 2;344(6183):523-7.\ PMID: 24786081\

\ denisova 1 group denisova\ itemRgb on\ longLabel Denisova Reconstructed DNA Methylation Map\ shortLabel Denisova Methyl\ track denisovaMethylation\ type bed 9\ visibility hide\ dhcBamDenisova Denisova Seq bam Denisova High-Coverage Sequence Reads 0 100 0 0 0 127 127 127 0 0 0 \ \ \ \
\ Denisova cave\
\ Denisova cave entrance in the Altai Mountains\ \ of Siberia, Russia where the bones were found from which\ \ DNA was sequenced\ \ (Copyright (C) 2010, Johannes Krause)\ \
\ \

Description

\

\ The Denisova Sequence track shows\ high-coverage sequence reads from an archaic Denisovan individual\ mapped to the human genome reference assembly.\ The Denisova DNA was extracted from a phalanx bone excavated from\ Denisova Cave in the Altai Mountains in southern Siberia.\

\ \

Methods

\

\ A novel single-stranded DNA library preparation method\ (Note 2,\ supplementary online materials of Meyer, 2012)\ was applied to DNA previously extracted from 40mg of bone (Reich, 2010).\ Using single-stranded DNA greatly increased the genomic coverage to\ 30X compared to an earlier 1.9X sequence (Reich, 2010).\ Sequence reads were aligned to human sequence Feb. 2009 (GRCh37/hg19)\ (downloaded from the\ 1000 Genomes Project) using the\ Burrows-Wheeler Aligner.\

\ \

Credits

\

\ Thanks to the\ Max Planck Institute for Evolutionary Anthropology\ for providing the\ BAM files used for this track.\

\ \

References

\

\ Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de\ Filippo C et al.\ \ A high-coverage genome sequence from an archaic Denisovan individual.\ Science. 2012 Oct 12;338(6104):222-6.\ PMID: 22936568; PMC: PMC3617501;\ supplementary online materials, Note 2

\ \

\ Reich D, Green RE, Kircher M, Krause J, Patterson N, Durand EY, Viola B, Briggs AW, Stenzel U,\ Johnson PL et al.\ \ Genetic history of an archaic hominin group from Denisova Cave in Siberia.\ Nature. 2010 Dec 23;468(7327):1053-60.\ PMID: 21179161\

\ denisova 1 aliQualRange 0:60\ bamColorMode gray\ bamGrayMode aliQual\ baseColorDefault diffBases\ baseColorUseSequence lfExtra\ group denisova\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Denisova High-Coverage Sequence Reads\ maxWindowToDraw 1000000\ noColorTag .\ pairEndsByName on\ shortLabel Denisova Seq\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 100\ showNames off\ track dhcBamDenisova\ type bam\ visibility hide\ dhcVcfDenisovaPinky Denisova Variants vcfTabix Variant Calls from High-Coverage Genome Sequence of an Archaic Denisovan Individual 0 100 0 0 0 127 127 127 0 0 0 \ \ \ \
\ Denisova cave\
\ Denisova cave entrance in the Altai Mountains\ \ of Siberia, Russia where the bones were found from which\ \ DNA was sequenced\ \ (Copyright (C) 2010, Johannes Krause)\ \
\ \

Description

\

\ The Denisova Variants track shows variant calls made using\ high-coverage sequence reads from an archaic Denisovan individual\ mapped to the human genome reference assembly.\ The Denisova DNA was extracted from a phalanx bone excavated from\ Denisova Cave in the Altai Mountains in southern Siberia.\

\ \

Methods

\

\ A novel single-stranded DNA library preparation method (Meyer, 2012)\ was applied to DNA previously extracted from 40mg of bone (Reich, 2010).\ Using single-stranded DNA greatly increased the genomic coverage to\ 30X compared to an earlier 1.9X sequence (Reich, 2010).\ Sequence reads were aligned to human sequence Feb. 2009 (GRCh37/hg19)\ (downloaded from the\ 1000 Genomes Project) using the\ Burrows-Wheeler Aligner.\ Genotype calls for single nucleotide variants and small insertions and\ deletions were made using the Unified Genotyper from the\ Genome Analysis Toolkit (GATK), with an additional iteration\ using a modified reference genome in order to reduce reference bias\ (Note 6,\ supplementary online materials of Meyer, 2012).\

\

\ Variant Call Format (VCF) files were enhanced by adding information from\ \ Ensembl Compara EPO alignments of 6 primates and of 35 Eutherian mammals,\ phastCons conservation scores generated using EPO alignments,\ 1000 Genomes Project\ integrated variant call files,\ University of Washington\ background selection scores,\ ENCODE/Duke Uniqueness of 20mers (see the Mappability track),\ segmental duplications from the Eichler lab (see the Segmental Dups track),\ and\ samtools mpileup summaries of mapped reads.\

\

\ Comprehensive VCF files that include information for homozygous-reference\ bases and uncovered bases are available. This track uses VCF files that were filtered\ to retain only those locations that clearly differ from the human reference genome.\ Reference genome bases without variant calls may indicate either matching Denisova sequence\ or insufficient data.\

\ \

Credits

\

\ Thanks to the\ Max Planck Institute for Evolutionary Anthropology\ for providing the variant-only VCF files used for this track.\

\ \

References

\

\ Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de\ Filippo C et al.\ \ A high-coverage genome sequence from an archaic Denisovan individual.\ Science. 2012 Oct 12;338(6104):222-6.\ PMID: 22936568; PMC: PMC3617501;\ supplementary online materials, Note 2

\ \

\ Reich D, Green RE, Kircher M, Krause J, Patterson N, Durand EY, Viola B, Briggs AW, Stenzel U,\ Johnson PL et al.\ \ Genetic history of an archaic hominin group from Denisova Cave in Siberia.\ Nature. 2010 Dec 23;468(7327):1053-60.\ PMID: 21179161\

\ denisova 1 group denisova\ longLabel Variant Calls from High-Coverage Genome Sequence of an Archaic Denisovan Individual\ shortLabel Denisova Variants\ track dhcVcfDenisovaPinky\ type vcfTabix\ vcfDoMaf off\ visibility hide\ cnvDevDelay Development Delay gvf Copy Number Variation Morbidity Map of Developmental Delay 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ Enrichment of large copy number variants (CNVs) has been linked to severe pediatric disease\ including developmental delay, intellectual disability and autism spectrum disorder. The\ association of individual loci with specific disorders, however, has still been problematic.\

\ \

\ This track shows CNVs from cases of developmental delay along with healthy control sets from two\ separate studies. The study by Cooper et al. (2011) analyzed samples from 15,767 children\ with various developmental disabilities and compared them with samples from 8,329 adult controls to\ produce a detailed genome-wide morbidity map of developmental delay and congenital birth defects.\ The study by Coe et al. (2014) further expanded the morbidity map by analyzing 13,318 new\ case samples along with 11,255 new controls.\

\ \

Display Conventions and Configuration

\ \

\ This is a composite track consisting of a Case subtrack and a Control subtrack. To turn a subtrack\ on or off, toggle the checkbox to the left of the subtrack name in the track controls at the top of\ the track description page.\

\ \

\ Items in this track are colored red for copy number loss and\ blue for copy number gain.\

\ \

Methods

\ \

\ The samples were analyzed using nine different CGH platforms with initial CNV calls filtered as\ described in Coe et al. (2014).\

\ \

\ Final CNV calls were decoupled from identifying information and submitted to dbVar as\ nstd54 and\ nstd100\ for unrestricted release.\

\ \

\ The 15,767 case individuals from the Cooper study comprise nstd54 sampleset 1, while the 8,329\ control individuals from the Cooper study comprise nstd54 samplesets 2-12. The 13,318 case\ individuals from the Coe study were combined with the Cooper case individuals to comprise nstd100\ sampleset 1. The 11,255 control individuals from the Coe study comprise nsdt100 samplesets 2 and 3.\

\ \

\ The Case subtrack was constructed using nstd100 sampleset 1. The Control subtrack was constructed by\ combining nstd100 samplesets 2 and 3 with nstd54 samplesets 2-12.\

\ \

Credits

\ \

\ We would like to thank Gregory Cooper, Brad Coe and the\ Eichler Lab at the University of\ Washington for providing the data for this track.\

\ \

References

\ \

\ Coe BP, Witherspoon K, Rosenfeld JA, van Bon BW, Vulto-van Silfhout AT, Bosco P, Friend KL, Baker C,\ Buono S, Vissers LE et al.\ \ Refining analyses of copy number variation identifies specific genes associated with developmental\ delay.\ Nat Genet. 2014 Oct;46(10):1063-71.\ PMID: 25217958; PMC: PMC4177294\

\ \

\ Cooper GM, Coe BP, Girirajan S, Rosenfeld JA, Vu TH, Baker C, Williams C, Stalker H, Hamid R, Hannig\ V et al.\ \ A copy number variation morbidity map of developmental delay.\ Nat Genet. 2011 Aug 14;43(9):838-46.\ PMID: 21841781; PMC: PMC3171215\

\ phenDis 1 compositeTrack on\ group phenDis\ longLabel Copy Number Variation Morbidity Map of Developmental Delay\ noScoreFilter .\ shortLabel Development Delay\ track cnvDevDelay\ type gvf\ visibility hide\ dgvGold DGV Gold Standard bigBed 12 Database of Genomic Variants: Gold Standard Variants 0 100 0 0 0 127 127 127 0 0 0 http://dgv.tcag.ca/gb2/gbrowse_details/dgv2_hg19?ref=$S;start=${;end=$};name=$$;class=Sequence varRep 1 bigDataUrl /gbdb/hg19/dgv/dgvGold.bb\ longLabel Database of Genomic Variants: Gold Standard Variants\ mouseOver ID:$name; Position; $chrom:${chromStart}-${chromEnd}; Type:$variant_sub_type; Frequency:$Frequency\ parent dgvPlus\ searchIndex name\ shortLabel DGV Gold Standard\ track dgvGold\ type bigBed 12\ url http://dgv.tcag.ca/gb2/gbrowse_details/dgv2_hg19?ref=$S;start=${;end=$};name=$$;class=Sequence\ dgvPlus DGV Struct Var bed 9 + Database of Genomic Variants: Structural Variation (CNV, Inversion, In/del) 0 100 0 0 0 127 127 127 0 0 0 http://dgv.tcag.ca/dgv/app/variant?id=$$&ref=$D

Description

\

\ This track displays copy number variants (CNVs), insertions/deletions (InDels),\ inversions and inversion breakpoints annotated by the\ Database of Genomic Variants (DGV), which\ contains genomic variations observed in healthy individuals.\ DGV focuses on structural variation, defined as\ genomic alterations that involve segments of DNA that are larger than\ 1000 bp. Insertions/deletions of 50 bp or larger are also included.\

\ \

Display Conventions

\

\ This track contains three subtracks:\

\

    \
  • Structural Variant Regions: annotations that have been generated from one or more reported\ structural variants at the same location.\
    • \
  • Supporting Structural Variants: the sample-level reported structural variants.\
    • \
  • Gold Standard Variants: curated variants from a selected number of studies in DGV.\
\

\ Color is used in these subtracks to indicate the type of variation:\

    \
  • Inversions and\ inversion breakpoints are purple.\
    • \ \
  • CNVs and InDels are blue if there is a\ gain in size relative to the reference.\
    • \ \
  • CNVs and InDels are red if there is a\ loss in size relative to the reference.\
    • \ \
  • CNVs and InDels are brown if there are reports of\ both a loss and a gain in size\ relative to the reference.\
    • \
\

\

\ The DGV Gold Standard subtrack utilizes a boxplot-like\ display to represent the merging of records as explained in the Methods\ section below. In this track, the middle box (where applicable), represents\ the high confidence location of the CNV, while the thin lines and end boxes\ represent the possible range of the CNV.\

\ \

\ Clicking on a variant leads to a page with detailed information about the variant, \ such as the study reference and PubMed abstract link, the study's method and any\ genes overlapping the variant. Also listed, if available, are the sequencing or array platform\ used for the study, a sample cohort description, sample size, sample ID(s) in which\ the variant was observed, observed gains and observed losses.\ If the particular variant is a merged variant, links to genome browser views of \ the supporting variants are listed. If the particular variant is a supporting variant,\ a link to the genome browser view of its merged variant is displayed.\ A link to DGV's Variant Details page for each variant is also provided.\

\

\ For most variants, DGV uses accessions from peer archives of structural variation\ (dbVar\ at NCBI or DGVa at EBI).\ These accessions begin with either "essv",\ "esv", "nssv", or "nsv", followed by a number.\ Variant submissions processed by EBI begin with "e"\ and those processed by NCBI begin with "n".\

\

\ Accessions with ssv are for variant calls on a particular sample, and if they\ are copy number variants, they generally indicate whether the change is a gain\ or loss. \ In a few studies the ssv represents the variant called by a single\ algorithm. If multiple algorithms were used, overlapping ssv's from\ the same individual would be combined to generate a sample level\ sv. \

\

\ If there are many samples analyzed in a study, and if there are many\ samples which have the same variant, there will be multiple ssv's with\ the same start and end coordinates.\ These sample level variants are then merged and combined to form a\ representative variant that highlights the common variant found in\ that study. The result is called a structural variant (sv) record.\ Accessions with sv are for regions asserted by submitters to contain\ structural variants, and often span ssv elements for both losses and\ gains. dbVar and DGVa do not record numbers of losses and gains\ encompassed within sv regions.\

\

\ DGV merges clusters of variants that share at least 70% reciprocal\ overlap in size/location, and assigns an accession beginning with\ "dgv", followed by an internal variant serial number,\ followed by an abbreviated study id. For example,\ the first merged variant from the Shaikh et al. 2009 study (study\ accession=nstd21) would be dgv1n21. The second merged variant would be\ dgv2n21 and so forth.\ Since in this case there is an additional level of clustering,\ it is possible for an "sv" variant to be both a merged\ variant and a supporting variant.\

\

\ For most sv and dgv variants, DGV displays the total number of\ sample-level gains and/or losses at the bottom of their variant detail\ page. Since each ssv variant is for one sample, its total is 1.\

\ \

Methods

\

\ Published structural variants are imported from peer archives\ dbVar and\ DGVa.\ DGV then applies quality filters and merges overlapping variants.\

\

\ For data sets where the variation calls are reported at a\ sample-by-sample level, DGV merges calls with similar boundaries\ across the sample\ set. Only variants of the same type (i.e. CNVs, Indels, inversions)\ are merged, and gains and losses are merged separately.\ Sample level calls that overlap by ≥ 70% are merged in this\ process.\

\ \

\ The initial criteria for the Gold Standard set require that a variant is found\ in at least two different studies and found in at least two different samples. After\ filtering out low-quality variants, the remaining variants are clustered according\ to 50% minimum overlap, and then merged into a single record. Gains and losses are merged \ separately.\

\ \

\ The highest ranking variant in the cluster defines the inner box, while \ the outer lines define the maximum possible start and stop coordinates of the CNV.\ In this way, the inner box forms a high-confidence CNV location and the thin connecting \ lines indicate confidence intervals for the location of CNV.\

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset. The genome annotation is stored in a bigBed\ file that can be downloaded from the\ download server.\ The exact filenames can be found in the track configuration file. Annotations can be converted to\ ASCII text by our tool bigBedToBed which can be compiled from the source code or\ downloaded as a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found\ here. The tool can\ also be used to obtain only features within a given range, for example:

\ \ 
\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/dgv/dgvMerged.bb -chrom=chr6 -start=0 -end=1000000 stdout\
\ \ \

Credits

\

\ Thanks to the Database of Genomic Variants for providing these data.\ In citing the Database of Genomic Variants please refer to MacDonald\ et al.\

\ \

References

\

\ Iafrate AJ, Feuk L, Rivera MN, Listewnik ML, Donahoe PK, Qi Y, Scherer SW, Lee C.\ \ Detection of large-scale variation in the human genome.\ Nat Genet. 2004 Sep;36(9):949-51.\ PMID: 15286789\

\ \

\ MacDonald JR, Ziman R, Yuen RK, Feuk L, Scherer SW.\ \ The Database of Genomic Variants: a curated collection of structural variation in the human\ genome.\ Nucleic Acids Res. 2014 Jan;42(Database issue):D986-92.\ PMID: 24174537; PMC: PMC3965079\

\ \

\ Zhang J, Feuk L, Duggan GE, Khaja R, Scherer SW.\ \ Development of bioinformatics resources for display and analysis of copy number and other structural\ variants in the human genome.\ Cytogenet Genome Res. 2006;115(3-4):205-14.\ PMID: 17124402\

\ \ varRep 1 compositeTrack on\ coriellUrlBase http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=\ dataVersion 2020-02-25\ exonArrows off\ exonNumbers off\ group varRep\ html dgvPlusGold\ itemRgb on\ longLabel Database of Genomic Variants: Structural Variation (CNV, Inversion, In/del)\ noScoreFilter .\ shortLabel DGV Struct Var\ track dgvPlus\ type bed 9 +\ url http://dgv.tcag.ca/dgv/app/variant?id=$$&ref=$D\ urlLabel DGV Browser and Report:\ visibility hide\ dosageSensitivity Dosage Sensitivity bigBed 9 + 2 pHaplo and pTriplo dosage sensitivity map from Collins et al 2022 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ This container track represents dosage sensitivity map data from Collins et al 2022. There are\ two tracks, one corresponding to the probability of haploinsufficiency (pHaplo) and \ one to the probability of triplosensitivity (pTriplo).

\

\ Rare copy-number variants (rCNVs) include deletions and duplications that occur \ infrequently in the global human population and can confer substantial risk for \ disease. Collins et al aimed to quantify the properties of haploinsufficiency (i.e., \ deletion intolerance) and triplosensitivity (i.e., duplication intolerance) throughout \ the human genome by analyzing rCNVs from nearly one million individuals to construct a \ genome-wide catalog of dosage sensitivity across 54 disorders, which defined 163 dosage \ sensitive segments associated with at least one disorder. These segments were typically \ gene-dense and often harbored dominant dosage sensitive driver genes. An ensemble \ machine learning model was built to predict dosage sensitivity probabilities (pHaplo & \ pTriplo) for all autosomal genes, which identified 2,987 haploinsufficient and 1,559 \ triplosensitive genes, including 648 that were uniquely triplosensitive.\

\ \

Display Conventions and Configuration

\ \

\ Each of the tracks is displayed with a distinct item (bed track) covering the entire gene locus wherever \ a score was available. Clicking on an item provides a link to DECIPHER which contains the sensitivity scores as well as\ additional information. Mousing over the items will display the gene symbol, the ESNG ID for that gene, \ and the respective sensitivity score for the track rounded to two decimal places. Filters are \ also available to specify specific score thresholds to display for each of the tracks.

\ \

Coloring and Interpretation

\ \

\

\ Each of the tracks is colored based on standardized cutoffs for pHaplo and pTriplo as described by the\ authors:

\

\ pHaplo scores ≥0.86 indicate that the average effect sizes of deletions are as strong as \ the loss-of-function of genes known to be constrained against protein truncating variants (average OR≥2.7)\ (Karczewski et al., 2020). \ pHaplo scores ≥0.55 indicate an odds ratio ≥2.

\

\ pTriplo scores ≥0.94 indicate that the average effect sizes of deletions are as strong as\ the loss-of-function of genes known to be constrained against protein truncating variants (average OR≥2.7)\ (Karczewski et al., 2020).\ pHaplo scores ≥0.68 indicate an odds ratio ≥2.

\

\ Applying these cutoffs defined 2,987 haploinsufficient (pHaplo≥0.86) and 1,559\ triplosensitive (pTriplo≥0.94) genes with rCNV effect sizes comparable to loss-of-function\ of gold-standard PTV-constrained genes.

\

\

See below for a summary of the color scheme:

\ \
    \
  • Dark red items - pHaplo ≥ 0.86
    • \
  • Bright red items - pHaplo < 0.86
    • \
  • Dark blue items - pTriplo ≥ 0.94
    • \
  • Bright blue items - pTriplo < 0.94
    • \
\ \

Methods

\ \

\ The data were downloaded from Zenodo which consisted of a 3-column file with\ gene symbols, pHaplo, and pTriplo scores. Since the data were created using\ GENCODEv19 models, the hg19 data was mapped using those coordinates by picking the earliest\ transcription start site of all of the respective gene transcripts and the furthest \ transcription end site. This leads to some gene boundaries that are not representative of a real\ transcript, but since the data are for gene loci annotations this maximum coverage was used.\ Finally, both scores were rounded to two decimal points for easier interpretation.

\

\ For hg38, we attempted to use updated gene positions using a few different datasets since \ gene symbols have been updated many times since GENCODEv19. A summary of the workflow\ can be seen below, with each subsequent step being used only for genes where mapping failed:

\
    \
  1. Gene symbols were mapped using MANE1.0. < 2000 items failed mapping here.
    2. \
  2. Mapping with GENCODEv45 was attempted.
    3. \
  3. Mapping with GENCODEv20 was attempted. At this point, 448 items were not mapped.
    4. \
  4. Finally, any missing items were lifted using the hg19 track. 19/448 items failed\ mapping due to their regions having been split from hg19 to hg38.
\ \

\ In summary, the hg19 track was mapped using the original GENCODEv19 mappings, and a series\ of steps were taken to map the hg38 gene symbols with updated coordinates. 19/18641 items\ could not be mapped and are missing from the hg38 tracks.

\

\ The complete \ makeDoc can be found online. This includes all of the track creation steps.

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

\ \

\ For automated download and analysis, the genome annotation is stored at UCSC in bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tool \ bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

\ bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi/dosageSensitivityCollins2022/pHaploDosageSensitivity.bb stdout\
\

\ \

\ Please refer to our\ Data Access FAQ\ for more information.\

\ \

Credits

\ \

\ Thanks to DECIPHER for their support and assistance with the data. We would also like to \ thank Anna Benet-Pagès for suggesting and assisting in track development and interpretation.\

\ \

References

\ \

\ Collins RL, Glessner JT, Porcu E, Lepamets M, Brandon R, Lauricella C, Han L, Morley T, Niestroj LM,\ Ulirsch J et al.\ \ A cross-disorder dosage sensitivity map of the human genome.\ Cell. 2022 Aug 4;185(16):3041-3055.e25.\ PMID: 35917817; PMC: PMC9742861\

\ phenDis 1 compositeTrack on\ group phenDis\ html dosageSensitivityCollins2022\ itemRgb on\ longLabel pHaplo and pTriplo dosage sensitivity map from Collins et al 2022\ noParentConfig on\ shortLabel Dosage Sensitivity\ track dosageSensitivity\ type bigBed 9 + 2\ visibility hide\ wgEncodeDukeAffyExon Duke Affy Exon bed 3 Affymetrix Exon Array from ENCODE/Duke 0 100 0 0 0 127 127 127 1 0 0

Description

\

\ \ This track displays human tissue microarray data using Affymetrix Human Exon 1.0 \ ST expression arrays. This RNA expression track was produced as part of the\ ENCODE Project. The RNA was extracted from cells that were also analyzed by DNaseI hypersensitivity (Duke DNaseI HS), FAIRE (UNC FAIRE), and ChIP (UTA TFBS).\

\ \

Display Conventions and Configuration

\

\ In contrast to the hg18 annotation, this track now displays exon array data\ that has been aggregated to the gene level for those probes that have been\ linked to genes. Probes not linked to genes are not included.\ The display for this track shows gene probe location and signal value as\ grayscale-colored items where higher signal values correspond to darker-colored\ blocks.\

\ \

\ Items with scores between 900-1000 have signal values greater than 9 that have been linearly scaled for that particular cell type. \ Items scoring 400-900 have signal values between 4 and 9, and the signal is simply multiplied by 100 to get the score. \ Items with scores between 200-400 have signal values below 4 that have been linearly scaled to fit that score range. \

\

\ The subtracks within this composite annotation track correspond to data from different\ cell types and tissues. The configuration options are shown at the top of the track\ description page, followed by a list of subtracks. To display only selected subtracks,\ uncheck the boxes next to the tracks you wish to hide.\

\

\ For information regarding specific microarray probes, turn on the Affy Exon Probes track, which \ can be found in the Expression track group. See Methods for a description\ as to how probe level data was processed to produce gene level annotations.\

\

Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

\ \

\ Data from these tracks are stored as bed files whose first six fields follow the bed file standard. The three additional fields are as follows:\

    \
  • signalValue: The normalized expression value for a gene, calculated as described below.
    • \
  • exonCount: The number of exons used in the calculation of the expression value.
    • \
  • constitutiveExons: The number of constitutive exons used in the calculation of the expression value.
    • \
\ \

Methods

\

\ \ Cells were grown according to the approved\ ENCODE cell culture protocols.\ Total RNA was isolated from these cells using trizol extraction followed by\ cleanup on RNEasy column (Qiagen) that included a DNaseI step. \ The RNA was checked for quality using a nanodrop and an Agilent Bioanalyzer.\ RNA (1 µg) deemed to be of good quality was then processed\ either by 1) the standard Affymetrix Whole transcript Sense Target labeling protocol that included a riboreduction step,\ or 2) the NuGEN labeling system.\ The fragmented biotin-labeled cDNA was hybridized over 16 h to Affymetrix Exon 1.0 ST arrays and scanned on an Affymetrix Scanner 3000 7G using AGCC software. \

\

\ Data from all replicates were then normalized together.\ Probesets flagged as cross-hybridizing were removed from the analysis (Salomonis et al. 2010).\ Though these arrays provide exon-level resolution, gene-level expression was estimated by\ grouping probesets by gene for normalization (Bemmo et al. 2008). Probesets were assigned\ to genes based on the GENCODE v10 annotation (July 2011). An exon was classified as\ constitutive or non-constitutive based on whether it was present in all protein-coding transcripts.\ For genes with at least 4 constitutive probes, only constitutive probesets were used to\ estimate gene expression. For all other genes, including all non-protein-coding genes, \ all (non-cross-hybridizing) probesets that mapped to an expressed exon in any transcript of the gene were used. \ Gene-level expression estimates were normalized using Affymetrix Power Tools (APT) (Lockstone 2011)\ with the chipstream command "rma-bg, med-norm, pm-gcbg, med-polish". This chipstream calls \ for an RMA normalization with gc-background correction using antigenomic background probes. \

\

\ While the data was generated using the same microarray platform, two different experimental\ backgrounds were present due to a change in labeling reagents (Affymetrix vs. NuGEN; see Methods above). \ It was found that batch effects related to this change were causing array data to group by experimental protocol\ rather than cell type relatedness. We used an R script (ComBat) to correct for this batch effect (Johnson et al. 2007).\

\ \

Verification

\

\ When biological replicates were available, data were verified by analyzing replicates displaying a Pearson correlation coefficient > 0.9.\

\ \

Release Notes

\

\ This is release 3 of this track (April 2012). Several new cell types have been added. The name of cell line Astrocy was changed to NH-A. \

\ \

Credits

\ \

\ RNA was extracted from each cell type by Greg Crawford's group at \ Duke University.\ RNA was purified and hybridized to Affymetrix Exon arrays by\ Sridar Chittur and\ Scott Tenenbaum at the University of Albany-SUNY. \ Data analyses were primarily performed by\ Nathan Sheffield (Duke University) with assistance from Melissa Cline (UCSC), Zhancheng Zhang (UNC Chapel Hill), and Darin London (Duke University). \

\ \

Contact: \ \ Terry Furey\ \ \ \

References

\ \

\ Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.\ \ Gene expression and isoform variation analysis using Affymetrix Exon Arrays.\ BMC Genomics. 2008 Nov 7;9:529.\

\ \

\ Johnson WE, Li C, Rabinovic A.\ \ Adjusting batch effects in microarray expression data using empirical Bayes methods.\ Biostatistics. 2007 Jan;8(1):118-27.\

\ \

\ Lockstone HE.\ \ Exon array data analysis using Affymetrix power tools and R statistical software.\ Brief Bioinform. 2011 Nov;12(6):634-44.\

\ \

\ Salomonis N, Schlieve CR, Pereira L, Wahlquist C, Colas A, Zambon AC, Vranizan K, Spindler MJ, Pico AR, Cline MS et al.\ \ Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation.\ Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10514-9.\

\ \

Data Release Policy

\

\ Data users may freely use ENCODE data, but\ may not, without prior consent, submit publications that use an\ unpublished ENCODE dataset until nine months following the release of\ the dataset. This date is listed in the Restricted Until column,\ above. The full data release policy for ENCODE is available\ here.\

\ expression 1 boxedCfg on\ compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell treatment=treatment\ dimensionAchecked rep1,rep2\ dimensions dimensionA=rep dimensionY=cellType dimensionX=treatment\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line treatment=Treatment replicate=Rep dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ group expression\ html wgEncodeDukeAffyExon.release3\ longLabel Affymetrix Exon Array from ENCODE/Duke\ noInherit on\ priority 0\ scoreFilter 10\ scoreFilterLimits 0:1000\ shortLabel Duke Affy Exon\ sortOrder cellType=+ treatment=+ rep=+\ subGroup1 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2A549=A549 (Tier_2) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2MCF7=MCF-7 (Tier_2) t3A8988T=8988T t3AOSMC=AoSMC t3CHORION=Chorion t3CLL=CLL t3COLO829=Colo829 t3FIBROBL=Fibrobl t3FIBROPAG08395=FibroP_AG08395 t3FIBROPAG08396=FibroP_AG08396 t3FIBROPAG20443=FibroP_AG20443 t3GLIOBLA=Gliobla t3GM12891=GM12891 t3GM12892=GM12892 t3GM18507=GM18507 t3GM19238=GM19238 t3GM19239=GM19239 t3GM19240=GM19240 t3H7HESC=H7-hESC t3H9ES=H9ES t3HEK293T=HEK293T t3HEPATOCYTES=Hepatocytes t3HMEC=HMEC t3HPDE6E6E7=HPDE6-E6E7 t3HSMM=HSMM t3HSMMFSHD=HSMM_FSHD t3HSMMTUBE=HSMMtube t3HSMMTUBEFSHD=HSMMtube_FSHD t3HTR8SVN=HTR8svn t3HUH7=Huh-7 t3HUH75=Huh-7.5 t3IPSCWRU1=iPS_CWRU1 t3IPSNIHI7=iPS_NIHi7 t3IPSNIHI11=iPS_NIHi11 t3LNCAP=LNCaP t3MEDULLO=Medullo t3MEL2183=Mel_2183 t3MELANO=Melano t3MYOMETR=Myometr t3NHA=NH-A t3NHEK=NHEK t3OSTEOBLASTS=Osteoblasts t3PROGFIB=ProgFib t3STELLATE=Stellate t3UCH1=UCH-1 t3UROTHELIA=Urothelia\ subGroup2 rep Rep rep1=1 rep2=2 rep3=3 rep4=4\ subGroup3 treatment Treatment zNONE=None CTCFSHRNA=CTCF_shRNA_knockdown RANDSHRNA=Randomized_shRNA_control HYPOXLAC=Hypoxia,_Lactic_acidosis ESTRO=Estradiol_100_nM VEH=Vehicle IFNA4H=IFN-α_4_h IFNG4H=IFN-γ_4_h METHYLTRI=Methyltrienolone NABUT=Sodium_Butyrate SERUMFREE=Serum-free_media TGFB=TGF-β UT189=UT189_E._coli\ superTrack wgEncodeExonArraySuper dense\ track wgEncodeDukeAffyExon\ type bed 3\ useScore 1\ viewUi on\ visibility hide\ wgEncodeOpenChromDnase Duke DNaseI HS bed 3 Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University) 1 100 0 0 0 127 127 127 1 0 0

Description

\

These tracks display DNaseI hypersensitivity (HS) evidence as part of the\ four Open Chromatin track sets.\ DNaseI is an enzyme that has long been used to map general\ chromatin accessibility and DNaseI "hypersensitivity" is a feature of active\ cis-regulatory sequences. The use of this method has led to the discovery of\ functional regulatory elements that include promoters, enhancers, silencers,\ insulators, locus control regions, and novel elements. DNaseI hypersensitivity\ signifies chromatin accessibility following binding of trans-acting factors in\ place of a canonical nucleosome.\

\

Together with FAIRE and\ ChIP-seq experiments, these tracks display the locations of active regulatory\ elements identified as open chromatin in\ multiple cell types\ from the Duke, UNC-Chapel Hill, UT-Austin, and EBI ENCODE group.\ Within this project, open chromatin was identified using two\ independent and complementary methods: these DNaseI HS assays\ and Formaldehyde-Assisted Isolation of Regulatory Elements (FAIRE),\ combined with chromatin immunoprecipitation (ChIP) for select\ regulatory factors. DNaseI HS and FAIRE provide assay\ cross-validation with commonly identified regions delineating the\ highest confidence areas of open chromatin. ChIP assays provide\ functional validation and preliminary annotation of a subset of\ open chromatin sites. Each method employed Illumina (formerly Solexa)\ sequencing by synthesis as the detection platform.\ The Tier 1 and Tier 2 cell types were additionally verified using\ high-resolution 1% ENCODE tiled microarrays supplied by NimbleGen.\

\

Other Open Chromatin track sets:\

    \
  • Data for the FAIRE experiments can be found in\ UNC FAIRE.\
  • Data for the ChIP experiments can be found in\ UTA TFBS.\
  • A synthesis of all the open chromatin assays for select cell lines can\ be previewed in\ Open Chrom Synth.\
\ \

Display Conventions and Configuration

\

This track is a multi-view composite track that contains a single data type\ with multiple levels of annotation (views). For each view, there are\ multiple subtracks representing different cell types that display individually\ on the browser. Instructions for configuring multi-view tracks are\ here.\ Chromatin data displayed here represents a continuum of signal intensities.\ The Crawford lab recommends setting the "Data view scaling: auto-scale"\ option when viewing signal data in full mode to see the full dynamic\ range of the data. Note that in regions that do not have open chromatin sites,\ autoscale will rescale the data and inflate the background signal, making the\ regions appear noisy. Changing back to fixed scale will alleviate this issue.\ In general, for each experiment in each of the cell types, the\ Duke DNaseI HS tracks contain the following views:\

\
Peaks
\
Regions of enriched signal in DNaseI HS experiments.\ Peaks were called based on signals created using F-Seq, a software program\ developed at Duke (Boyle et al., 2008b). Significant regions were\ determined by fitting the data to a gamma distribution to calculate p-values.\ Contiguous regions where p-values were below a 0.05/0.01 threshold were\ considered significant. The solid vertical line in the peak represents the\ point with the highest signal.
\

\

F-Seq Density Signal
\
Density graph (wiggle) of signal\ enrichment calculated using F-Seq for the combined set of sequences from all\ replicates. F-Seq employs Parzen kernel density estimation to create base pair\ scores (Boyle et al., 2008b). This method does not look at fixed-length\ windows, but rather weights contributions of nearby sequences in proportion to\ their distance from that base. It only considers sequences aligned 4 or less\ times in the genome and uses an alignability background model to try to correct\ for regions where sequences cannot be aligned. For each cell type (especially\ important for those with an abnormal karyotype), a model to try to correct for\ amplifications and deletions that is based on control input data was also used.
\

\

Base Overlap Signal
\
An alternative version of the\ F-Seq Density Signal track annotation that provides a higher resolution\ view of the raw sequence data. This track also includes the combined set of\ sequences from all replicates. For each sequence, the aligned read is\ extended 5 bp in both directions from its 5' aligned end where DNase cut\ the DNA. The score at each base pair represents the number of\ extended fragments that overlap the base pair.
\
\

\

\ Peaks and signals displayed in this track are the results of pooled replicates. The raw\ sequence and alignment files for each replicate are available for\ download.\

\

Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

\ \ \

Methods

\

Cells were grown according to the approved\ ENCODE cell culture protocols.\

\

DNaseI hypersensitive sites were isolated using methods called DNase-seq or\ DNase-chip (Song and Crawford, 2010; Boyle et al., 2008a; Crawford et al., 2006).\ Briefly, cells were lysed with NP40, and intact nuclei were digested with optimal\ levels of DNaseI enzyme. DNaseI-digested ends were captured from three different\ DNase concentrations, and material was sequenced using Illumina (Solexa)\ sequencing. DNase-seq data for Tier 1 and Tier 2 cell lines were verified by comparing\ multiple independent growths (replicates) and determining the reproducibility of the\ data. In general, cell lines were verified if 80% of the top 50,000 peaks in\ one replicate were detected in the top 100,000 peaks of a second replicate. For\ some cell types, additional verification was performed using similar material\ hybridized to NimbleGen Human ENCODE tiling arrays (1% of the genome) along with\ the input DNA as reference (DNase-chip). A more detailed protocol is available\ here.\

\

The read length for sequences from DNase-seq was 20 bases long due to a MmeI\ cutting step of the approximately 50 kb DNA fragments extracted after DNaseI\ digestion. Sequences from each experiment were aligned to the genome using\ BWA (Li et al., 2008) for the GRCh37 (hg19) assembly.\

The command used for these alignments was:
\
> bwa aln -t 8 genome.fa s_1.sequence.txt.bfq > s_1.sequence.txt.sai
\ where genome.fa is the whole genome sequence and s_1.sequence.txt.bfq is one lane\ of sequences converted into the required bfq format.
\

\

Sequences from multiple lanes\ were combined for a single replicate using the bwa samse command and converted\ to the sam/bam format using SAMtools.\

\

Only those sequences that aligned to 4 or fewer locations were retained. Other sequences\ were also filtered based on their alignment to problematic regions\ (such as satellites and rRNA genes - see\ supplemental materials).\ The mappings of these short reads to the genome are available for\ download.

\

Using F-seq, the resulting digital signal was converted to a continuous wiggle track that employs a Parzen kernel density estimation to create base pair scores\ (Boyle et al., 2008b). Input data was generated for several\ cell lines. These were used directly to create a control/background model used\ for F-Seq when generating signal annotations for these cell lines.\ These models were meant to correct for sequencing biases, alignment artifacts,\ and copy number changes in these cell lines. Input data was not generated\ directly for other cell lines. For cell lines for which there is \ no input experiment available, the peaks were generated using the control\ of generic_male or generic_female, as an attempt to create a general\ background based on input data from several cell types. These files\ are in "iff" format, which is used when calling peaks with\ F-seq software, and can be downloaded from the\ production lab directly\ from under the section titled "Copy number / karyotype correction."\ Using a general background model derived from the available Input data sets provided corrections for\ sequencing biases and alignment artifacts, but did not correct for cell type-specific copy number changes.\

The exact command used for this step was:
\
> fseq -l 600 -v -f 0 -b <bff files> -p <iff files> aligments.bed
\ where the bff files are the background files based on alignability, the\ iff files are the background files based on the Input experiments,\ and alignments.bed is a bed file of filtered sequence alignments.
\

\

Discrete DNaseI HS sites (peaks) were identified from DNase-seq F-seq density signal.\ Significant regions were determined by fitting the data to a gamma distribution to\ calculate p-values. Contiguous regions where p-values were below a 0.05/0.01\ threshold were considered significant.\

\

Data from the high-resolution 1% ENCODE tiled microarrays supplied by\ NimbleGen were normalized using the Tukey biweight normalization and peaks\ were called using ChIPOTle (Buck et al., 2005) at multiple levels\ of significance. Regions matched on size to these peaks that were devoid of\ any significant signal were also created as a null model. These data were used\ for additional verification of Tier 1 and Tier 2 cell lines by ROC analysis.\ Files containing this data can be found in the \ Downloads \ directory, labeled 'Validation' in the View column.\

\ \ \ \

Release Notes

\

\ This is Release 3 (August 2012) of the track. It includes 27 new experiments including 18 new cell lines. \ \

\

\

    \
  • A synthesis of open chromatin evidence from the three assay types was\ compiled for Tier 1 and 2 cell lines and can be viewed in\ Open Chromatin Synthesis.\
    • \
  • Enhancer and Insulator Functional assays: A subset of DNase and FAIRE\ regions were cloned into functional tissue culture reporter assays to test for\ enhancer and insulator activity. Coordinates and results from these\ experiments can be found in the\ supplemental materials. \
    • \
\

\ \

Credits

\

\ These data and annotations were created by a collaboration of multiple\ institutions (contact:\ \ Terry Furey)\ \ \

\

\

\ We thank NHGRI for ENCODE funding support.\

\ \

References

\ \

\ Bhinge AA, Kim J, Euskirchen GM, Snyder M, Iyer VR.\ \ Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE).\ Genome Res. 2007 Jun;17(6):910-6.\

\ \

\ Boyle AP, Davis S, Shulha HP, Meltzer P, Margulies EH, Weng Z, Furey TS, Crawford GE.\ \ High-resolution mapping and characterization of open chromatin across the genome.\ Cell. 2008 Jan 25;132(2):311-22.\

\ \

\ Boyle AP, Guinney J, Crawford GE, Furey TS.\ \ F-Seq: a feature density estimator for high-throughput sequence tags.\ Bioinformatics. 2008 Nov 1;24(21):2537-8.\

\ \

\ Buck MJ, Nobel AB, Lieb JD.\ \ ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data.\ Genome Biol. 2005;6(11):R97.\

\ \

\ Crawford GE, Davis S, Scacheri PC, Renaud G, Halawi MJ, Erdos MR, Green R, Meltzer PS, Wolfsberg TG, Collins FS.\ \ DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays.\ Nat Methods. 2006 Jul;3(7):503-9.\

\ \

\ Crawford GE, Holt IE, Whittle J, Webb BD, Tai D, Davis S, Margulies EH, Chen Y, Bernat JA, Ginsburg D et al.\ \ Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS).\ Genome Res. 2006 Jan;16(1):123-31.\

\ \

\ ENCODE Project Consortium, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET et al.\ \ Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.\ Nature. 2007 Jun 14;447(7146):799-816.\

\ \

\ Giresi PG, Kim J, McDaniell RM, Iyer VR, Lieb JD.\ \ FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin.\ Genome Res. 2007 Jun;17(6):877-85.\

\ \

\ Giresi PG, Lieb JD.\ \ Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements).\ Methods. 2009 Jul;48(3):233-9.\

\ \

\ Li H, Ruan J, Durbin R.\ \ Mapping short DNA sequencing reads and calling variants using mapping quality scores.\ Genome Res. 2008 Nov;18(11):1851-8.\

\ \

\ Song L, Crawford GE.\ \ DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells.\ Cold Spring Harb Protoc. 2010 Feb;2010(2):pdb.prot5384.\

\ \

Data Release Policy

\ Data users may freely use ENCODE data, but may not, without prior consent, submit publications \ that use an unpublished ENCODE dataset until nine months following the release of the dataset. \ This date is listed in the Restricted Until column, above. The full data release policy for ENCODE is available\ here.\ regulation 1 compositeTrack on\ configurable on\ controlledVocabulary encode/cv.ra cellType=cell treatment=treatment\ dataVersion ENCODE July 2012 Freeze\ dimensions dimensionY=cellType dimensionX=treatment\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line treatment=Treatment view=View dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ group regulation\ html wgEncodeOpenChromDnase.release3\ longLabel Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)\ noInherit on\ shortLabel Duke DNaseI HS\ sortOrder cellType=+ treatment=+ view=+\ subGroup1 view Views Peaks=Peaks SIG=Density_Signal SIGBO=Overlap_Signal\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2A549=A549 (Tier_2) t2BCELLSCD20RO01794=B_cells_CD20+_RO01794 (Tier_2) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2IMR90=IMR90 (Tier_2) t2MCF7=MCF-7 (Tier_2) t2MONOCYTESCD14=Monocytes_CD14+ (Tier_2) t2SKNSH=SK-N-SH (Tier_2) t3A8988T=8988T t3ADULTCD4TH0=Adult_CD4+_Th0 t3ADULTCD4TH1=Adult_CD4+_Th1 t3AOSMC=AoSMC t3CEREBELLUMOC=Cerebellum_OC t3CEREBRUMFRONTALOC=Cerebrum_frontal_OC t3CHORION=Chorion t3CLL=CLL t3COLO829=Colo829 t3ECC1=ECC-1 t3FIBROBL=Fibrobl t3FIBROBLGM03348=Fibrobl_GM03348 t3FIBROPAG08395=FibroP_AG08395 t3FIBROPAG08396=FibroP_AG08396 t3FIBROPAG20443=FibroP_AG20443 t3FRONTALCORTEXOC=Frontal_cortex_OC t3GCBCELL=GC_B_cell t3GLIOBLA=Gliobla t3GM10248=GM10248 t3GM10266=GM10266 t3GM12891=GM12891 t3GM12892=GM12892 t3GM13976=GM13976 t3GM13977=GM13977 t3GM18507=GM18507 t3GM19238=GM19238 t3GM19239=GM19239 t3GM19240=GM19240 t3GM20000=GM20000 t3H7HESC=H7-hESC t3H9ES=H9ES t3HEARTOC=Heart_OC t3HEK293T=HEK293T t3HEPATOCYTES=Hepatocytes t3HMEC=HMEC t3HPDE6E6E7=HPDE6-E6E7 t3HSMM=HSMM t3HSMMEMB=HSMM_emb t3HSMMFSHD=HSMM_FSHD t3HSMMTUBE=HSMMtube t3HTR8SVN=HTR8svn t3HUH7=Huh-7 t3HUH75=Huh-7.5 t3IPSCWRU1=iPS_CWRU1 t3IPSNIHI07=iPS_NIHi7 t3IPSNIHI11=iPS_NIHi11 t3ISHIKAWA=Ishikawa t3LNCAP=LNCaP t3MEDULLO=Medullo t3MEDULLOD341=Medullo_D341 t3MEL2183=Mel_2183 t3MELANO=Melano t3MYOMETR=Myometr t3NAIVEBCELL=Naive_B_cell t3NHEK=NHEK t3OLFACTORYNEUROSPHERE=Olfactory_neurosphere t3OSTEOBLASTS=Osteoblasts t3PANISLETD=PanIsletD t3PANISLETS=PanIslets t3PHTE=pHTE t3PROGFIB=ProgFib t3PSOASMUSCLEOC=Psoas_muscle_OC t3RWPE1=RWPE1 t3STELLATE=Stellate t3T47D=T-47D t3UROTHELIA=Urothelia\ subGroup3 treatment Treatment CTCFSHRNA=CTCF_shRNA_knockdown RANDSHRNA=Randomized_shRNA_Control DM002P1H=DMSO_0.02% EST10NM1H=Estradiol_10_nM_1_h EST10NM30M=Estradiol_10_nM_30_m ESTRO=Estrogen HYPOXLAC=Hypoxia_LacAcid HYPOXLACCON=Hypoxia_LacAcid_Control IFNa4h=IFN-α_4_h LENTICON=Lenti-Control LENTIMYOD=Lenti-MyoD METHYLT=Methyltrienolone (androgen) NABUT=NaBut SAHA1U72HR=SAHA_1_µM_72_h SAHACTRL=SAHA_Control SERUMFREE=Serum_Free_Media A4TAM10030=4-OHTAM_100_nM_30_m UT189=UT189 G1PHASE=G1_phase G2MPHASE=G2-M_phase zNONE=None\ superTrack wgEncodeDNAseSuper dense\ track wgEncodeOpenChromDnase\ type bed 3\ useScore 0\ wgEncodeOpenChromDnaseViewPeaks Duke DNaseI HS bed 3 Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University) 3 100 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)\ pValueFilter 0.0\ pValueFilterLimits 0:16\ parent wgEncodeOpenChromDnase\ scoreFilter 100\ scoreFilterLimits 100:1000\ scoreMin 600\ shortLabel Duke DNaseI HS\ track wgEncodeOpenChromDnaseViewPeaks\ view Peaks\ visibility pack\ wgEncodeOpenChromDnaseViewSigBo Duke DNaseI HS bed 3 Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University) 2 100 0 0 0 127 127 127 1 0 0 regulation 1 autoScale off\ longLabel Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)\ maxHeightPixels 100:32:16\ maxLimit 630\ minLimit 0\ parent wgEncodeOpenChromDnase\ shortLabel Duke DNaseI HS\ track wgEncodeOpenChromDnaseViewSigBo\ view SIGBO\ viewLimits 0:50\ visibility full\ windowingFunction mean+whiskers\ wgEncodeOpenChromDnaseViewSignal Duke DNaseI HS bed 3 Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University) 2 100 0 0 0 127 127 127 1 0 0 regulation 1 autoScale off\ longLabel Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)\ maxHeightPixels 100:32:16\ maxLimit 3.2\ minLimit 0\ parent wgEncodeOpenChromDnase\ shortLabel Duke DNaseI HS\ track wgEncodeOpenChromDnaseViewSignal\ view SIG\ viewLimits 0:0.1\ visibility full\ windowingFunction mean+whiskers\ wgEncodeMapabilityViewDuniq Duke Uniqueness bed 3 Mappability or Uniqueness of Reference Genome from ENCODE 2 100 0 0 0 127 127 127 0 0 0 map 1 autoScale off\ longLabel Mappability or Uniqueness of Reference Genome from ENCODE\ maxHeightPixels 100:32:16\ parent wgEncodeMapability\ shortLabel Duke Uniqueness\ track wgEncodeMapabilityViewDuniq\ view DUNIQ\ viewLimits 0:1\ visibility full\ windowingFunction mean+whiskers\ wgEncodeChromSuper ENC Chromatin ENCODE Chromatin Interactions 0 100 0 0 0 127 127 127 0 0 0

\

Description

\

\ These tracks display evidence of chromatin interactions in ENCODE cell types.\ A chromatin interaction is defined as two regions of the genome that are far apart in terms of genomic distance, but are spatially proximate to each other in the 3-dimensional cellular nucleus.\ Binding sites are also displayed when a transcription factor is used in the assay.\ A binding site is defined as a region of the genome that is highly enriched by specific Chromatin Immunoprecipitation (ChIP) against a transcription factor, which indicates that the transcription factor binds specifically to this region.
\
\ ChIA-PET:\ The Chromatin Interaction Analysis with Paired-End Tag (ChIA-PET) (Li 2010, Fullwood 2010) track shows the locations of RNA polymerase II-bound (RNAPII-bound) chromatin interactions determined by Paired-End Tag (PET) sequencing using proximity-ligated chromatin extracts from human cell lines.\ The RNAPII ChIA-PET experiment generates RNAPII binding sites. \ Generally, a chromatin interaction is more likely to connect two RNAPII binding sites together.
\
\ 5C:\ Chromosome Conformation Capture Carbon Copy (5C) (Dostie 2006) maps genomic interactions of a focused set of restriction enzymes. \ The three-dimensional organization of chromosomes and chromatin domains is obtained by cross-linking, digestion, ligation and then detection (Dekker 2002).\ \

Display Conventions

\

These are multi-view composite tracks that contains multiple\ data types controllable using the 'Select view' function as described here.\ Most ENCODE tracks contain multiple subtracks, corresponding to\ multiple experimental conditions. If a track contains a large\ number of subtracks, only some subtracks will be displayed by default.\ The user can select which subtracks are displayed via the display controls\ on the track details pages.

\

Further details on display conventions and data interpretation are available in the subtrack descriptions.

\ \

Credits
\

\ These data were generated and analyzed as part of the ENCODE project, a\ genome-wide consortium project with the aim of cataloging all\ functional elements in the human genome. This effort includes\ collecting a variety of data across related experimental conditions to\ facilitate integrative analysis. Consequently, additional ENCODE tracks may \ contain data that is relevant to the data in these tracks.
\ \

References

\ \

\ Dekker J, Rippe K, Dekker M, Kleckner N.\ \ Capturing chromosome conformation.\ Science. 2002 Feb 15;295(5558):1306-11.\

\ \

\ Dostie J, Richmond TA, Arnaout RA, Selzer RR, Lee WL, Honan TA, Rubio ED, Krumm A, Lamb J, Nusbaum C et al.\ \ Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.\ Genome Res. 2006 Oct;16(10):1299-309.\

\ \

\ Fullwood MJ, Han Y, Wei CL, Ruan X, Ruan Y.\ \ Chromatin interaction analysis using paired-end tag sequencing.\ Curr Protoc Mol Biol. 2010 Jan;Chapter 21:Unit 21.15.1-25.\

\ \

\ Li G, Fullwood MJ, Xu H, Mulawadi FH, Velkov S, Vega V, Ariyaratne PN, Mohamed YB, Ooi HS, Tennakoon C et al.\ \ ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing.\ Genome Biol. 2010;11(2):R22.\

\ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column on the track configuration page \ and the download page. The full data release policy\ for ENCODE is available\ here.

\ expression 0 group expression\ longLabel ENCODE Chromatin Interactions\ shortLabel ENC Chromatin\ superTrack on\ track wgEncodeChromSuper\ wgEncodeDnaMethylSuper ENC DNA Methyl ENCODE DNA Methylation 0 100 0 0 0 127 127 127 0 0 0

Description

\

DNA methylation is essential for normal development and is\ associated with silencing large regions of DNA through processes such\ as imprinting and X-chromosome inactivation. The majority of CpG\ dinucleotides are methylated in mammals. Unmethylated CpGs occur\ in segments called "CpG islands", which often lie upstream of\ genes in the regulatory regions and impact transcription.
\
\

\

Display Conventions

\ These tracks are multi-view composite tracks that contains multiple\ data types (views). Each view within each track\ has separate display controls, as described here.\ Most ENCODE tracks contain multiple subtracks, corresponding to\ multiple experimental conditions. If a track contains a large\ number of subtracks, only some subtracks will be displayed by default.\ The user can select which subtracks are displayed via the display controls\ on the track details pages.\

Credits

\ These data were generated and analyzed as part of the ENCODE project, a\ genome-wide consortium project with the aim of cataloging all\ functional elements in the human genome. This effort includes\ collecting a variety of data across related experimental conditions, to\ facilitate integrative analysis. Consequently, additional ENCODE tracks \ may contain data that is relevant to the data in these tracks.\

References

\

\ Illingworth RS, Bird AP. CpG islands--'a rough guide'.\ FEBS Lett. 2009 Jun 5;583(11):1713-20.\

\

\ Caiafa P, Zampieri M. DNA methylation and\ chromatin structure: the puzzling CpG islands. J Cell Biochem.\ 2005 Feb 1;94(2):257-65.\

\

\ Latham T, Gilbert N, Ramsahoye B. DNA methylation in mouse embryonic stem\ cells and development. Cell Tissue Res. 2008\ Jan;331(1):31-55.\

\

Data Release Policy

\ Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset\ until nine months following the release of the dataset. This date is\ listed in the Restricted Until column on the track configuration page\ and the download page. The full data release policy for ENCODE is\ available here.
\
\ regulation 0 group regulation\ longLabel ENCODE DNA Methylation\ shortLabel ENC DNA Methyl\ superTrack on\ track wgEncodeDnaMethylSuper\ wgEncodeDNAseSuper ENC DNase/FAIRE ENCODE Open Chromatin by DNaseI HS and FAIRE 0 100 0 0 0 127 127 127 0 0 0

Description

\

These tracks display evidence of open chromatin in \ ENCODE \ cell types. \ Open chromatin describes segments of DNA that are unpacked and accessible\ to the regulatory factors, enzymes, and smaller molecules in the cell.\ This is in contrast to closed chromatin, which is packed and\ inaccessible. Transcriptionally-active chromatin tends to be more open,\ while condensed, densely-packed chromatin tends to be silent.\

\

Open chromatin was identified using complementary methods including:\ DNaseI hypersensitivity (HS), Formaldehyde-Assisted Isolation of\ Regulatory Elements (FAIRE), and chromatin immunoprecipitation (ChIP)\ for select regulatory factors.
\
\ DNaseI HS: DNaseI is an enzyme\ that has long been used to map\ general chromatin accessibility, and DNaseI "hyperaccessibility" or\ "hypersensitivity" is a feature of active cis-regulatory sequences. The\ use of this method has led to the discovery of functional regulatory\ elements that include enhancers, silencers, insulators, promotors,\ locus control regions and novel elements. DNaseI hypersensitivity\ signifies chromatin accessibility following binding of trans-acting\ factors in place of a canonical nucleosome.
\
\ FAIRE: FAIRE (Formaldehyde\ Assisted Isolation of Regulatory\ Elements) is a method to isolate and identify nucleosome-depleted\ regions of the genome. FAIRE was initially discovered in yeast and\ subsequently shown to identify active regulatory elements in human\ cells (Giresi et al., 2007). Although less well-characterized than\ DNase, FAIRE also appears to identify functional regulatory elements\ that include enhancers, silencers, insulators, promotors, locus control\ regions and novel elements.
\
\ ChIP: ChIP (Chromatin\ Immunoprecipitation) is a method to identify\ the specific location of proteins that are directly or indirectly bound\ to genomic DNA. By identifying the binding location of\ sequence-specific transcription factors, general transcription\ machinery components, and chromatin factors, ChIP can help in the\ functional annotation of the open chromatin regions identified by\ DNaseI HS mapping and FAIRE.
\

\

Display Conventions

\ These tracks are multi-view composite tracks that contains multiple\ data types (views). Each view within each track\ has separate display controls, as described here.\ Most ENCODE tracks contain multiple subtracks, corresponding to\ multiple experimental conditions. If a track contains a large\ number of subtracks, only some subtracks will be displayed by default.\ The user can select which subtracks are displayed via the display controls\ on the track details pages.\

Credits
\

\ These data were generated and analyzed as part of the ENCODE project, a\ genome-wide consortium project with the aim of cataloging all\ functional elements in the human genome. This effort includes\ collecting a variety of data across related experimental conditions, to\ facilitate integrative analysis. Consequently, additional ENCODE tracks may \ contain data that is relevant to the data in these tracks.
\

References

\ Ho L, Crabtree GR. Chromatin remodelling during development.\ Nature. 2010 Jan 28;463(7280):474-84.
\
\ Geiman TM, Robertson KD. Chromatin remodeling, histone\ modifications, and DNA methylation-how does it all fit together?\ J\ Cell\ Biochem.\ 2002;87(2):117-25.
\
\

Data Release Policy

\ Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset\ until nine months following the release of the dataset. This date is\ listed in the Restricted Until column on the track configuration page\ and the download page. The full data release policy for ENCODE is\ available here.
\
\ regulation 0 group regulation\ longLabel ENCODE Open Chromatin by DNaseI HS and FAIRE\ shortLabel ENC DNase/FAIRE\ superTrack on\ track wgEncodeDNAseSuper\ wgEncodeHistoneSuper ENC Histone ENCODE Histone Modification 0 100 0 0 0 127 127 127 0 0 0

Description

\

These tracks display maps of chromatin state\ of ENCODE cell\ types. Histones are a group of closely-related proteins that together\ form the nucleosome. There are six histone families: H1, H2A, H2B,\ H3, H4, and H5. Each nucleosome core is formed by two H2A-H2B dimers and\ a H3-H4 tetramer, while H1 and H5 bind the nucleosome and DNA. When\ histone proteins undergo post-transcriptional modifications at specific\ amino acids (methylation, acyetylation), these modifications (referred\ to as marks) perform a role in regulating the winding of the\ DNA around the nucleosome. This in turn regulates gene expression by\ controlling the accessibility of the chromatin. Histone marks vary in\ their effect. Promoters, enhancers, transcribed regions, and silenced\ regions are each associated with specific histone marks.

\

\ The ChIP-seq method enables identifying regions of DNA that interact\ with specific histone marks. This method involves cross-linking\ histones and other DNA associated proteins to genomic DNA within cells\ using formaldehyde. The cross-linked chromatin is subsequently\ extracted, mechanically sheared, and immunoprecipitated using specific\ antibodies. This has the effect of capturing segments of DNA that are\ bound to the protein selected by the antibody. After reversal of\ cross-links, the immunoprecipitated DNA is sequenced and mapped to the\ human reference genome. The relative enrichment of each antibody-target\ (epitope) across the genome is inferred from the density of mapped\ fragments. If the antibody is specific to a given histone mark, then\ this procedure identifies segments of the genome associated with that\ mark.

\ \

Display Conventions

\

\ These tracks are multi-view composite tracks that contains multiple\ data types (views). Each view within each track\ has separate display controls, as described here.\ Most ENCODE tracks contain multiple subtracks, corresponding to\ multiple experimental conditions. If a track contains a large\ number of subtracks, only some subtracks will be displayed by default.\ The user can select which subtracks are displayed via the display controls\ on the track details pages.

\

Credits

\

\ These data were generated and analyzed as part of the ENCODE project, a\ genome-wide consortium project with the aim of cataloging all\ functional elements in the human genome. This effort includes\ collecting a variety of data across related experimental conditions, to\ facilitate integrative analysis. Consequently, additional ENCODE tracks may \ contain data that is relevant to the data in these tracks.

\

References

\

\ Geiman TM, Robertson KD. Chromatin remodeling, histone\ modifications, and DNA methylation-how does it all fit together?\ J Cell Biochem. 2002;87(2):117-25.

\

\ Segal E, Widom J. \ What controls nucleosome positions? Trends Genet. 2009\ Aug;25(8):335-43.

\ \

Data Release Policy

\

\ Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset\ until nine months following the release of the dataset. This date is\ listed in the Restricted Until column on the track configuration page\ and the download page. The full data release policy for ENCODE is\ available here.\

\ regulation 0 group regulation\ longLabel ENCODE Histone Modification\ shortLabel ENC Histone\ superTrack on\ track wgEncodeHistoneSuper\ wgEncodeRbpSuper ENC RNA Binding ENCODE RNA Binding Proteins 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

In eukaryotic organisms, gene regulatory networks require an\ additional level of coordination that links transcriptional and\ post-transcriptional processes. Messenger RNAs (mRNAs) have\ traditionally been viewed as passive molecules in the pathway from\ transcription to translation. However, it is now clear that RNA-binding\ proteins (RBPs) play a major role in regulating multiple mRNAs in order\ to facilitate gene expression patterns.
\

\

These tracks can elucidate RNA processing by identifying RNA\ molecules that interact with specific RBPs. They were developed using\ assays that first purify mRNA-RBP complexes and then separate the\ complexes to identify the target mRNAs bound to specific RBPs. The\ mRNAs can be identified by methods including sequencing, microarrays,\ and SAGE. \

\ The tracks in this supertrack contain two forms of information: genes\ whose transcripts were bound by the given RBP (such as SUNY RIP GeneSt)\ and approximate location of the RBP binding site in the mRNA sequence\ (such SUNY RIP Tiling and SUNY RIP-seq).
\

\ \

Please note:

\

\ RIP input tracks (both array and sequencing based) were created for use\ in downstream informatic analysis to produce RBP specific RIP tracks.\ Low abundance RNA that is undetectable in the input samples may be\ proportionally enriched to the point of detection in the RIPs. This may\ be confusing to some users expecting\ to see RIP as a subset of input. Users seeking information on total\ RNA should examine the "expression" RNA-seq tracks produced by other\ ENCODE groups.\

\ \

Display Conventions and Configuration

\ \

\ These tracks are multi-view composite tracks that contains multiple\ data types (views). Each view within each track\ has separate display controls, as described here.\ Most\ ENCODE\ tracks contain multiple subtracks, corresponding to\ multiple experimental conditions. If a track contains a large\ number of subtracks, only some subtracks will be displayed by default.\ The user can select which subtracks are displayed via the display\ controls\ on the track details pages.

\ \

Credits

\ \

\ These data were generated and analyzed as part of the ENCODE project, a\ genome-wide consortium project with the aim of cataloging all\ functional elements in the human genome. This effort includes\ collecting a variety of data across related experimental conditions, to\ facilitate integrative analysis. Consequently, additional ENCODE tracks\ may contain data that is relevant to the data in these tracks.

\ \

References

\ \

\ Baroni TE, Chittur SV, George AD, Tenenbaum SA.\ \ Advances in RIP-chip analysis : RNA-binding protein immunoprecipitation-microarray profiling.\ Methods Mol Biol. 2008;419:93-108.\

\ \

\ George AD, Tenenbaum SA.\ \ MicroRNA modulation of RNA-binding protein regulatory elements.\ RNA Biol. 2006 Apr;3(2):57-9.\

\ \

\ Keene JD, Tenenbaum SA.\ \ Eukaryotic mRNPs may represent posttranscriptional operons.\ Mol Cell. 2002 Jun;9(6):1161-7.\

\ \

\ Penalva LO, Tenenbaum SA, Keene JD.\ \ Gene expression analysis of messenger RNP complexes.\ Methods Mol Biol. 2004;257:125-34.\

\ \

\ Tenenbaum SA, Lager PJ, Carson CC, Keene JD.\ \ Ribonomics: identifying mRNA subsets in mRNP complexes using antibodies to RNA-binding proteins and genomic arrays.\ Methods. 2002 Feb;26(2):191-8.\

\ \

Data Release Policy

\ \

\ Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset\ until nine months following the release of the dataset. This date is\ listed in the Restricted Until column on the track configuration page\ and the download page. The full data release policy for ENCODE is\ available here.\

\ regulation 0 group regulation\ longLabel ENCODE RNA Binding Proteins\ shortLabel ENC RNA Binding\ superTrack on\ track wgEncodeRbpSuper\ wgEncodeTfBindingSuper ENC TF Binding ENCODE Transcription Factor Binding 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ Transcription is regulated through the binding of transcription factor\ proteins to specific cis-level regulatory sites in the DNA.\ The nature of this regulation depends on the transcription factor.\ For example, some proteins activate transcription by recruiting RNA\ polymerase, some repress transcription by suppressing this\ recruitment, and others insulate proximal regions from the activity of\ nearby transcriptional activators or repressors.\ A key characteristic of each transcription factor protein is its DNA\ binding domain. Each DNA binding domain recognizes and interacts with\ DNA that matches a specific nucleotide pattern, or motif. These\ motifs tend to be short and degenerate, so even when the DNA binding\ motif is known, one cannot generally predict where a given\ transcription factor may bind. In general, transcription factor\ binding is determined experimentally.\

\ \ These tracks contain transcription factor binding sites determined by\ ChIP-seq. This process involves fragmenting DNA, selecting the\ fragments of DNA that are bound by a certain transcription factor, and\ sequencing those DNA fragments. This generally yields a large library\ of DNA sequences, including some that were bound by the transcription\ factor directly, some that were bound indirectly via interactions with\ other molecules, and some false positives (such as cases of\ nonspecific binding). With the appropriate analysis methods, ChIP-seq can be \ a valuable approach for elucidating transcription factor binding and \ cis-level regulation.\ \
\ \

Display Conventions

\ \ These tracks are multi-view composite tracks that contains multiple\ data types (views). Each view within each track\ has separate display controls, as described here.\ Most ENCODE tracks contain multiple subtracks, corresponding to\ multiple experimental conditions. If a track contains a large\ number of subtracks, only some subtracks will be displayed by default.\ The user can select which subtracks are displayed via the display controls\ on the track details pages.\ \

Credits

\ \ These data were generated and analyzed as part of the ENCODE project, a\ genome-wide consortium project with the aim of cataloging all\ functional elements in the human genome. This effort includes\ collecting a variety of data across related experimental conditions, to\ facilitate integrative analysis. Consequently, additional ENCODE tracks may \ contain data that is relevant to the data in these tracks. \ \

References

\ \

\ Euskirchen GM, Rozowsky JS, Wei CL, Lee WH, Zhang ZD, Hartman S, Emanuelsson O, Stolc V, Weissman S, Gerstein MB et al.\ \ Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies.\ Genome Res. 2007 Jun;17(6):898-909.\

\ \

\ Hudson ME, Snyder M.\ \ High-throughput methods of regulatory element discovery.\ Biotechniques. 2006 Dec;41(6):673, 675, 677 passim.\

\ \

Data Use Policy

\

\ \ External data users may freely download, analyze and publish results based on\ any ENCODE data without restrictions as soon as they are released.\ The full policy is available here:\ ENCODE Data Use Policy for External Users\ regulation 0 group regulation\ longLabel ENCODE Transcription Factor Binding\ shortLabel ENC TF Binding\ superTrack on\ track wgEncodeTfBindingSuper\ encodeRegions ENCODE Pilot bed 4 . Regions Used for ENCODE Pilot Project (1%) 0 100 150 100 30 202 177 142 0 0 21 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr18,chr19,chr2,chr20,chr21,chr22,chr4,chr5,chr6,chr7,chr8,chr9,chrX,

Description

\

\ This track depicts target regions for the \ NHGRI ENCODE \ project.\ The long-term goal of this project is to identify all functional elements \ in the human genome sequence to facilitate a better understanding of human \ biology and disease.

\

\ During the pilot phase, 44 regions comprising 30 Mb — approximately \ 1% of the human genome — have been selected for intensive study to identify, \ locate and analyze functional elements within the regions. These targets are \ being studied by a diverse public research consortium to test and evaluate the\ efficacy of various methods, technologies, and strategies for locating \ genomic features. The outcome of this initial phase will form the basis for a \ larger-scale effort to analyze the entire human genome.

\

\ See the NHGRI target \ selection process web page for a description of how the target \ regions were selected.

\

\ To open a UCSC Genome Browser with a menu for selecting ENCODE regions on the \ human genome, use ENCODE Regions in the UCSC Browser. The UCSC resources \ provided for the ENCODE project are described on the \ UCSC ENCODE Portal.

\ \

Credits

\

\ Thanks to the NHGRI ENCODE project for providing this initial set of data.

\ \ map 1 chromosomes chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr18,chr19,chr2,chr20,chr21,chr22,chr4,chr5,chr6,chr7,chr8,chr9,chrX\ color 150,100,30\ dataVersion ENCODE June 2005 Freeze\ group map\ longLabel Regions Used for ENCODE Pilot Project (1%)\ origAssembly hg16\ shortLabel ENCODE Pilot\ track encodeRegions\ type bed 4 .\ visibility hide\ ensGene Ensembl Genes genePred ensPep Ensembl Genes 0 100 150 0 0 202 127 127 0 0 0

Description

\ \

\ These gene predictions were generated by Ensembl.\

\ \

\ For more information on the different gene tracks, see our Genes FAQ.

\ \

Methods

\ \

\ For a description of the methods used in Ensembl gene predictions, please refer to\ Hubbard et al. (2002), also listed in the References section below. \

\ \

Data access

\

\ Ensembl Gene data can be explored interactively using the\ Table Browser or the\ Data Integrator. \ For local downloads, the genePred format files for hg19 are available in our\ \ downloads directory as ensGene.txt.gz or in our\ \ genes download directory in GTF format.

\ For programmatic access, the data can be queried from the \ REST API or\ directly from our public MySQL\ servers. Instructions on this method are available on our\ MySQL help page and on\ our blog.

\ \

\ Previous versions of this track can be found on our archive download server.\

\ \

Credits

\ \

\ We would like to thank Ensembl for providing these gene annotations. For more information, please see\ Ensembl's genome annotation page.\

\ \

References

\ \

\ Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J,\ Curwen V, Down T et al.\ The Ensembl genome database project.\ Nucleic Acids Res. 2002 Jan 1;30(1):38-41.\ PMID: 11752248; PMC: PMC99161\

\ genes 1 color 150,0,0\ ensemblIdUrl https://grch37.ensembl.org/Homo_sapiens\ exonNumbers on\ group genes\ longLabel Ensembl Genes\ shortLabel Ensembl Genes\ track ensGene\ type genePred ensPep\ visibility hide\ gnomADPextEsophagus_GastroesophagealJunction Esophagus-Gastroesophageal Junction bigWig 0 1 gnomAD pext Esophagus-Gastroesophageal Junction 0 100 139 115 85 197 185 170 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Esophagus_GastroesophagealJunction.bw\ color 139,115,85\ longLabel gnomAD pext Esophagus-Gastroesophageal Junction\ parent gnomadPext off\ shortLabel Esophagus-Gastroesophageal Junction\ track gnomADPextEsophagus_GastroesophagealJunction\ visibility hide\ gnomADPextEsophagus_Mucosa Esophagus-Mucosa bigWig 0 1 gnomAD pext Esophagus-Mucosa 0 100 85 34 0 170 144 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Esophagus_Mucosa.bw\ color 85,34,0\ longLabel gnomAD pext Esophagus-Mucosa\ parent gnomadPext off\ shortLabel Esophagus-Mucosa\ track gnomADPextEsophagus_Mucosa\ visibility hide\ gnomADPextEsophagus_Muscularis Esophagus-Muscularis bigWig 0 1 gnomAD pext Esophagus-Muscularis 0 100 187 153 136 221 204 195 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Esophagus_Muscularis.bw\ color 187,153,136\ longLabel gnomAD pext Esophagus-Muscularis\ parent gnomadPext off\ shortLabel Esophagus-Muscularis\ track gnomADPextEsophagus_Muscularis\ visibility hide\ evofold EvoFold bed 6 + EvoFold Predictions of RNA Secondary Structure 0 100 20 90 0 137 172 127 0 0 0

Description

\

\ This track shows RNA secondary structure predictions made with the\ EvoFold program, a comparative method that exploits the evolutionary signal\ of genomic multiple-sequence alignments for identifying conserved\ functional RNA structures.

\ \

Display Conventions and Configuration

\

\ Track elements are labeled using the convention ID_strand_score.\ When zoomed out beyond the base level, secondary structure prediction regions\ are indicated by blocks, with the stem-pairing regions shown in a darker shade \ than unpaired regions. Arrows indicate the predicted strand.\ When zoomed in to the base level, the specific secondary structure predictions \ are shown in parenthesis format. The confidence score for each position is\ indicated in grayscale, with darker shades corresponding to higher scores.\

\ The details page for each track element shows the predicted secondary structure \ (labeled SS anno), together with details of the multiple species \ alignments at that location. Substitutions relative to the human sequence are \ color-coded according to their compatibility with the predicted secondary \ structure (see the color legend on the details page). Each prediction is \ assigned an overall score and a sequence of position-specific scores. The \ overall score measures evidence for any functional RNA structures in the given \ region, while the position-specific scores (0 - 9) measure the confidence of \ the base-specific annotations. Base-pairing positions are annotated \ with the same pair symbol. The offsets are provided to ease\ visual navigation of the alignment in terms of the human sequence. The offset\ is calculated (in units of ten) from the start position of the element on \ the positive strand or from the end position when on the negative strand.

\

\ The graphical display may be filtered to show only those track elements \ with scores that meet or exceed a certain threshhold. To set a \ threshhold, type the minimum score into the text box at the top of the \ description page.

\ \

Methods

\

\ Evofold makes use of phylogenetic\ stochastic context-free grammars (phylo-SCFGs), which are combined\ probabilistic models of RNA secondary structure and primary sequence\ evolution. The predictions consist of both a specific RNA secondary\ structure and an overall score. The overall score is essentially a\ log-odd score between a phylo-SCFG modeling the constrained evolution of\ stem-pairing regions and one which only models unpaired regions.

\

\ The predictions for this track were based on the conserved elements of\ an 8-way vertebrate alignment of the human, chimpanzee, mouse, rat,\ dog, chicken, zebrafish, and Fugu assemblies. NOTE: These predictions\ were originally computed on the hg17 (May 2004) human assembly, from\ which the hg16 (July 2003), hg18 (May 2006), and hg19 (Feb 2009) predictions\ were lifted. As a result, the multiple alignments shown on the track\ details pages may differ from the 8-way alignments used for their\ prediction. Additionally, some weak predictions have been eliminated\ from the set displayed on hg18 and hg19. The hg17 prediction set corresponds\ exactly to the set analyzed in the EvoFold paper referenced below.\

\ \

Credits

\

\ The EvoFold program and browser track were developed by \ Jakob Skou Pedersen\ of the UCSC Genome Bioinformatics Group, now at \ Aarhus University, Denmark.

\

The RNA secondary structure is rendered using the VARNA Java applet.\ \

References

\ \

EvoFold

\

\ Pedersen JS, Bejerano G, Siepel A, Rosenbloom K, Lindblad-Toh K, Lander ES, Kent J, Miller W,\ Haussler D.\ \ Identification and classification of conserved RNA secondary structures in the human genome.\ PLoS Comput Biol. 2006 Apr;2(4):e33.\ PMID: 16628248; PMC: PMC1440920\

\ \

Phylo-SCFGs

\

\ Knudsen B, Hein J.\ \ RNA secondary structure prediction using stochastic context-free grammars and evolutionary\ history.\ Bioinformatics. 1999 Jun;15(6):446-54.\ PMID: 10383470\

\ \

\ Pedersen JS, Meyer IM, Forsberg R, Simmonds P, Hein J.\ \ A comparative method for finding and folding RNA secondary structures within protein-coding\ regions.\ Nucleic Acids Res. 2004;32(16):4925-36.\ PMID: 15448187; PMC: PMC519121\

\ \

PhastCons

\

\ Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K, Clawson H, Spieth J, Hillier\ LW, Richards S et al.\ \ Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.\ Genome Res. 2005 Aug;15(8):1034-50.\ PMID: 16024819; PMC: PMC1182216\

\ genes 1 color 20,90,0\ group genes\ longLabel EvoFold Predictions of RNA Secondary Structure\ mafTrack multiz46way\ origAssembly hg17\ pennantIcon 17.jpg ../goldenPath/help/liftOver.html "lifted from hg17"\ shortLabel EvoFold\ track evofold\ type bed 6 +\ visibility hide\ evsEsp6500 EVS Variants vcfTabix NHLBI GO Exome Sequencing Project (ESP) - Variants from 6,503 Exomes 0 100 0 0 0 127 127 127 0 0 24 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX,chrY, http://evs.gs.washington.edu/EVS/PopStatsServlet?searchBy=rsOrChrom&target=$$&chromosome=$s&chromoStart=${&chromoEnd=$}&x=0&y=0
\

Description

\ \

The goal of the \ NHLBI GO Exome Sequencing Project (ESP) \ is to discover novel genes and mechanisms contributing to heart, lung and blood disorders by \ pioneering the application of next-generation sequencing of the protein coding regions of the \ human genome across diverse, richly-phenotyped populations and to share these datasets and \ findings with the scientific community to extend and enrich the diagnosis, management and \ treatment of heart, lung and blood disorders. The current data release (ESP6500SI-V2-SSA137) \ through the \ EVS website \ is taken from 6,503 samples drawn from multiple \ ESP cohorts \ and represents all of the ESP exome variant data.\ \

\ Data in this track were obtained from the \ EVS Release Version: v.0.0.25. (Feb. 7, 2014).\

\ \

Display Conventions

\

\ In "dense" mode, a vertical line is drawn at the position of each\ variant.\ In "pack" and "full" modes, in addition to the vertical line, a label to \ the left shows the reference allele first and variant alleles below \ (A = red, C = blue, \ G = green, T = magenta, \ Indels = black).\ Hovering the pointer over any variant will prompt the display of the occurrences numbers for each\ allele in the Exome Sequencing Project's database. Clicking on any variant will result in \ full details of that variant being displayed as well as possible links to the ESP and dbSNP \ databases.

\ \

Methods

\ \

Sequences were aligned to NCBI build 37 human genome reference using BWA. PCR duplicates \ were removed using Picard. Alignments were recalibrated using GATK. Lane-level indel realignments \ and base alignment quality (BAQ) adjustments were applied.\

\

\ All data were simultaneously analyzed for exome SNP variants at the University of Michigan \ (by the Abecasis Laboratory). SNPs were called using a two-step approach. First, genotype \ likelihood files (GLFs) were generated using samtools pileup on individual BAM files. Next, \ we used glfMultiples, a multi-sample variant caller, to generate initial SNP calls. Details of\ the likelihood model implemented in glfMultiples are given in Li, et al., 2011\ (in the section entitled "Identifying Potential Polymorphic Sites"). The Michigan SNP calling pipeline\ is available at: \ http://genome.sph.umich.edu/wiki/UMAKE. \ This pipeline makes diploid calls for pseudo-autosomal regions of male samples and haploid \ calls for the rest of the chromosome. Female samples have diploid calls for all regions on \ the X chromosome. SNPs were filtered by a machine-learning technique called support \ vector machine (SVM) classification (for a detailed description, see \ Filter Status).\

\ \

Small INDEL variants were analyzed at the Broad Institute (by the Genome Sequencing and \ Analysis group) using the \ GATK \ variation discovery pipeline following the guidelines in the \ GATK best practices v4. \ More specifically, each BAM was reduced to create a Reduced BAM, and then INDELs were \ discovered by analyzing all samples simultaneously with the GATK \ UnifiedGenotyper,\ and subsequently filtered by the GATK Variant Quality Score Recalibration (VQSR) filtering \ model, again following the V4 best practices. The INDEL genotypes for X and Y chromosomes\ were adjusted to be consistent with the samples' genders. Female samples have diploid calls \ for all regions on the X chromosome. Male samples have diploid calls for pseudo-autosomal \ regions on the X chromosome and haploid calls for the rest of the X chromosome and on the \ Y chromosome as well. However, the INDEL calls for the ESP data are preliminary and not as \ robust as the SNP calls at this point. Users are advised to keep this difference in mind \ when applying the ESP data to research studies.\

\

All SNPs and INDELs were further annotated by \ SeattleSeqAnnotation137, \ and the variant annotations at the coding-DNA and protein levels mostly follow \ HGVS \ notations.\

\

The SNP calls are included in the release of dbSNP build 138. The full dataset is described in\ Fu, et al., 2013, and a subset of the data (i.e., 2,500 exomes) was published by the ESP Population\ Genetics and Statistical Analysis Working Group in Tennessen, et al., 2012.\

\ \

Credits

\ \

\ The authors would like to thank the \ NHLBI GO Exome Sequencing Project \ and its ongoing studies which produced and provided exome variant calls for comparison: the \ Lung GO Sequencing Project (HL-102923), \ the \ WHI Sequencing Project (HL-102924), \ the \ Broad GO Sequencing Project (HL-102925), \ the \ Seattle GO Sequencing Project (HL-102926), \ and the \ Heart GO Sequencing Project (HL-103010).\

\

\ Contact: evsserver@uw.edu\

\ \

References

\

\ Fu W, O'Connor TD, Jun G, Kang HM, Abecasis G, Leal SM, Gabriel S, Rieder MJ, Altshuler D, Shendure\ J et al.\ \ Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants.\ Nature. 2013 Jan 10;493(7431):216-20.\ PMID: 23201682; PMC: PMC3676746\

\ \

\ Li Y, Sidore C, Kang HM, Boehnke M, Abecasis GR.\ \ Low-coverage sequencing: implications for design of complex trait association studies.\ Genome Res. 2011 Jun;21(6):940-51.\ PMID: 21460063; PMC: PMC3106327\

\ \

\ Tennessen JA, Bigham AW, O'Connor TD, Fu W, Kenny EE, Gravel S, McGee S, Do R, Liu X, Jun G et\ al.\ \ Evolution and functional impact of rare coding variation from deep sequencing of human exomes.\ Science. 2012 Jul 6;337(6090):64-9.\ PMID: 22604720; PMC: PMC3708544\

\
\ varRep 1 chromosomes chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX,chrY\ group varRep\ longLabel NHLBI GO Exome Sequencing Project (ESP) - Variants from 6,503 Exomes\ maxWindowToDraw 5000000\ shortLabel EVS Variants\ track evsEsp6500\ type vcfTabix\ url http://evs.gs.washington.edu/EVS/PopStatsServlet?searchBy=rsOrChrom&target=$$&chromosome=$s&chromoStart=${&chromoEnd=$}&x=0&y=0\ urlLabel Exome Variant Server:\ vcfDoFilter off\ vcfDoQual off\ visibility hide\ exac ExAC bed 3 Exome Aggregation Consortium (ExAC) Variants and Calling Regions 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This track shows over 8.75 million single nucleotide variants (SNVs)\ and over 600,000 insertions or deletions (indels)\ as well as exome variant calling regions\ in 60,706 unrelated individuals sequenced as part of various population genetic \ and disease-specific \ studies\ collected by the\ Exome Aggregation Consortium (ExAC),\ release 0.3.\ Raw data from all studies have been reprocessed through a unified pipeline and jointly\ variant-called to increase consistency across projects.\ For more information on the processing pipeline and population annotations,\ see the release files\ \ README.release0.3\ and\ \ README.population_annotations\ respectively.\

\ \

Display Conventions

\

\ For the variants subtrack,\ in "dense" mode, a vertical line is drawn at the position of each variant.\ In "pack" mode, ref and alt alleles are displayed to the left of a vertical\ line with colored portions corresponding to allele counts. Hovering the mouse pointer\ over a variant pops up a display of alleles and counts.\

\ \

Data Access

\ \

\ The raw data can be explored interactively with the \ Table Browser, or the\ Data Integrator.\ For automated analysis, the genome annotation is stored in a bigBed file that can be downloaded from the\ download server.\ The underlying data files for this track are called\ ExAC.r0.3.sites.vep.hg19.vcf.gz and exacCallingRegions.bb. \ Individual regions or the whole genome annotation can be obtained using our tool bigBedToBed \ which can be compiled from the source code or downloaded as a precompiled binary\ for your system. Instructions for downloading source code and binaries can be found\ here. \ The tool can also be used to obtain only features within a given range, for example:
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/ExAC/exacCallingRegions.bb -chrom=chr6 -start=0 -end=1000000 stdout \
\ Please refer to our mailing list archives\ for questions, or our Data Access FAQ for more information. \

\ \

Credits

\

\ Thanks to the\ Exome Aggregation Consortium\ for making these data available in advance of publication. The data are released under a\ Fort Lauderdale Agreement; please email\ \ exomeconsortium@gmail.com\ \ with any further questions and please reference the 2016 paper.\

\ \

References

\ \

\ Exome Aggregation Consortium (ExAC), Cambridge, MA\ (http://exac.broadinstitute.org),\ release 0.3, downloaded Mar. 30, 2015.\

\ \

\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ \ Analysis of protein-coding genetic variation in 60,706 humans.\ Nature. 2016 Aug 17;536(7616):285-91.\ PMID: 27535533; PMC: PMC5018207\

\ varRep 1 compositeTrack on\ dataVersion release 0.3\ group varRep\ longLabel Exome Aggregation Consortium (ExAC) Variants and Calling Regions\ shortLabel ExAC\ track exac\ type bed 3\ gnomadExomesAvgCoverage Exome Avg Cover bigWig 0 100 Genome Aggregation Database (gnomAD) Average Exome Sample Coverage 2 100 0 0 0 127 127 127 0 0 24 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY,

Description

\

\ The tracks that are listed here contain data from unrelated individuals sequenced as part of\ various population-genetic and disease-specific studies collected by the Genome Aggregation Database (gnomAD).\ Individuals affected by severe pediatric diseases and first-degree relatives were excluded from the\ studies. However, some individuals with severe disease may still have remained in the datasets,\ although probably at an equivalent or lower frequency than observed in the general population. Raw\ data from all studies have been reprocessed using a standardized pipeline and jointly variant-called\ process, which aims to increase consistency between projects. For more information on the processing\ pipeline and population annotations, see the following blog post gnomAD,\ gnomAD v2.1 \ and the 2.0.2 README.

\ \

\ The available data tracks are:\

\

\ \

Display Conventions

\

\ These tracks are multi-view composite tracks that contain multiple data types (views). Each view\ within a track has separate display controls, as described here. Most gnomAD tracks contain\ multiple subtracks, corresponding to subsets of data. If a track contains many subtracks, only some\ subracks will be displayed by default. The user can select which subtracks are displayed via the\ display controls on the track details page.\

\ \

Data Access

\

\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that \ can be downloaded from our download server, subject\ to the conditions set forth by the gnomAD consortium (see below). Coverage values\ for the genome are in bigWig files in\ the coverage/ subdirectory. Variant VCFs can be found in the vcf/ subdirectory.

\

\ The data can also be found directly from the gnomAD downloads page. Please refer to \ our mailing list archives for questions, or our Data Access FAQ for more information.

\ \

\ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\

\ \

Credits

\

\ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the ODC Open Database License\ (ODbL) as described here.\

\ \

References

\ \

\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ \ Analysis of protein-coding genetic variation in 60,706 humans.\ Nature. 2016 Aug 18;536(7616):285-91.\ PMID: 27535533; PMC: PMC5018207\

\ \

\ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ \ The mutational constraint spectrum quantified from variation in 141,456 humans.\ Nature. 2020 May;581(7809):434-443.\ PMID: 32461654; PMC: PMC7334197\

\ \

\ Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\ Gauthier LD, Wang H et al.\ \ A structural variation reference for medical and population genetics.\ Nature. 2020 May;581(7809):444-451.\ PMID: 32461652; PMC: PMC7334194\

\

\ Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\ Satterstrom FK, O'Donnell-Luria AH et al.\ \ Transcript expression-aware annotation improves rare variant interpretation.\ Nature. 2020 May;581(7809):452-458.\ PMID: 32461655; PMC: PMC7334198\

\ \ varRep 0 aggregate none\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY\ html gnomad\ longLabel Genome Aggregation Database (gnomAD) Average Exome Sample Coverage\ maxHeightPixels 100:50:8\ parent gnomadCoverage\ shortLabel Exome Avg Cover\ showSubtrackColorOnUi on\ track gnomadExomesAvgCoverage\ type bigWig 0 100\ view eAvg\ viewLimits 0:50\ visibility full\ gnomadExomesReadDepthPct Exome Coverage % bigWig 0 1 Genome Aggregation Database (gnomAD) Percentage of Exome Samples with at least nX Coverage 0 100 0 0 0 127 127 127 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,

Description

\

\ The tracks that are listed here contain data from unrelated individuals sequenced as part of\ various population-genetic and disease-specific studies collected by the Genome Aggregation Database (gnomAD).\ Individuals affected by severe pediatric diseases and first-degree relatives were excluded from the\ studies. However, some individuals with severe disease may still have remained in the datasets,\ although probably at an equivalent or lower frequency than observed in the general population. Raw\ data from all studies have been reprocessed using a standardized pipeline and jointly variant-called\ process, which aims to increase consistency between projects. For more information on the processing\ pipeline and population annotations, see the following blog post gnomAD,\ gnomAD v2.1 \ and the 2.0.2 README.

\ \

\ The available data tracks are:\

\

\ \

Display Conventions

\

\ These tracks are multi-view composite tracks that contain multiple data types (views). Each view\ within a track has separate display controls, as described here. Most gnomAD tracks contain\ multiple subtracks, corresponding to subsets of data. If a track contains many subtracks, only some\ subracks will be displayed by default. The user can select which subtracks are displayed via the\ display controls on the track details page.\

\ \

Data Access

\

\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that \ can be downloaded from our download server, subject\ to the conditions set forth by the gnomAD consortium (see below). Coverage values\ for the genome are in bigWig files in\ the coverage/ subdirectory. Variant VCFs can be found in the vcf/ subdirectory.

\

\ The data can also be found directly from the gnomAD downloads page. Please refer to \ our mailing list archives for questions, or our Data Access FAQ for more information.

\ \

\ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\

\ \

Credits

\

\ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the ODC Open Database License\ (ODbL) as described here.\

\ \

References

\ \

\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ \ Analysis of protein-coding genetic variation in 60,706 humans.\ Nature. 2016 Aug 18;536(7616):285-91.\ PMID: 27535533; PMC: PMC5018207\

\ \

\ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ \ The mutational constraint spectrum quantified from variation in 141,456 humans.\ Nature. 2020 May;581(7809):434-443.\ PMID: 32461654; PMC: PMC7334197\

\ \

\ Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\ Gauthier LD, Wang H et al.\ \ A structural variation reference for medical and population genetics.\ Nature. 2020 May;581(7809):444-451.\ PMID: 32461652; PMC: PMC7334194\

\

\ Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\ Satterstrom FK, O'Donnell-Luria AH et al.\ \ Transcript expression-aware annotation improves rare variant interpretation.\ Nature. 2020 May;581(7809):452-458.\ PMID: 32461655; PMC: PMC7334198\

\ \ varRep 0 aggregate none\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX\ html gnomad\ longLabel Genome Aggregation Database (gnomAD) Percentage of Exome Samples with at least nX Coverage\ maxHeightPixels 100:16:8\ parent gnomadCoverage\ shortLabel Exome Coverage %\ showSubtrackColorOnUi on\ track gnomadExomesReadDepthPct\ type bigWig 0 1\ view eRDepth\ viewLimits 0:1\ visibility hide\ exomeProbesets Exome Probesets bigBed Exome Capture Probesets and Targeted Region 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This set of tracks shows the genomic positions of probes and targets from a full \ suite of in-solution-capture target enrichment exome kits for Next Generation Sequencing (NGS)\ applications. Also known as exome sequencing or whole exome sequencing (WES), \ this technique allows high-throughput parallel sequencing of all exons (e.g., coding regions of genes \ which affect protein function), constituting about 1% of the human genome, or approximately 30 \ million base pairs.\

\

\ The tracks are intended to show the major differences in target genomic regions between the \ different exome capture kits from the major players in the NGS sequencing market:\ Illumina Inc., \ Roche NimbleGen Inc., \ Agilent Technologies Inc.,\ MGI Tech,\ Twist Bioscience, and\ Integrated DNA Technologies Inc..\

\ \

Display Conventions and Configuration

\ \

\ Items are shaded according to manufacturing company:\

    \
  • IDT (Integrated DNA Technologies)
    • \
  • Twist Biosciences
    • \
  • MGI Tech (Beijing Genomics Institute)
    • \
  • Roche NimbleGen
    • \
  • Agilent Technologies
    • \
  • Illumina
    • \
\

\ \

\ Tracks labeled as Probes (P) indicate the footprint of the oligonucleotide probes\ mapped to the human genome. This is the technically relevant targeted region by the assay. However, \ the sequenced region will be bigger than this since flanking sequences are sequenced as well. \ Tracks labeled as Target Regions (T) indicate the genomic regions targeted by the\ assay. This is the biologically relevant target region. Not all targeted regions\ will necessarily be sequenced perfectly; there might be some capture bias at certain locations.\ The Target\ Regions are those normally used for coverage analysis. \

\ \

Note that most exome probesets are available on hg19 only. If you are working with hg38 and cannot find\ a particular probeset there, try to go to hg19, configure the same track, and\ see if it exists there. If you cannot find an array, do not hesitate to send us\ an email with the name of the manufacturer website with the probe file. If\ an array is available on hg19 but not on hg38 and you need it for your work, we\ can lift the locations. Our mailing list can be reached at genome@soe.ucsc.edu.\

\ \

Methods

\ \

\ The capture of the genomic regions of interest using in-solution capture, is achieved \ through the hybridization of a set of probes (oligonucleotides) with a sample of fragmented genomic \ DNA in a solution environment. The probes hybridize selectively to the genomic regions of interest \ which, after a process of exclusion of the non-selective DNA material, can be pulled down and \ sequenced, enabling selective DNA sequencing of the genomic regions of interest (e.g., exons).\ In-solution capture sequencing is a sensitive method to detect single nucleotide variants, \ insertions and deletions, and copy number variations.\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
KitTargeted RegionDatabases Used for DesignYear of Release
IDT - xGen Exome Research Panel V1.039 MbCoding sequences from RefSeq (19,396 genes)2015
IDT - xGen Exome Research Panel V2.034 MbCoding sequences from RefSeq 109 (19,433 genes)2020
Twist - RefSeq Exome Panel3.6 MbCurated subset of protein coding genes from CCDSN/A
Twist - Core Exome Panel33 MbProtein coding genes from CCDSN/A
Twist - Comprehensive Exome Panel36.8 MbProtein coding genes from RefSeq, CCDS, and GENCODE 2020
Twist - Exome Panel 2.036.4 MbProtein coding genes from RefSeq, CCDS, and GENCODE 2021
MGI - Easy Exome Capture V459 MbCCDS, GENCODE, RefSeq, and miRBaseN/A
MGI - Easy Exome Capture V569 MbCCDS, GENCODE, RefSeq, miRBase, and MGI Clinical DatabaseN/A
Agilent - SureSelect Clinical Research Exome54 MbDisease-associated regions from OMIM, HGMD, and ClinVar2014
Agilent - SureSelect Clinical Research Exome V263.7 MbDisease-associated regions from OMIM, HGMD, ClinVar, and ACMG2017
Agilent - SureSelect Focused Exome12 MbDisease-associated regions from HGMD, OMIM and ClinVar2016
Agilent - SureSelect All Exon V451 MbCoding regions from CCDS, RefSeq, and GENCODE v6, miRBase v17, TCGA v6, and UCSC known genes2011
Agilent - SureSelect All Exon V4 + UTRs71 MbCoding regions and 5' and 3' UTR sequences from CCDS, RefSeq, and GENCODE v6, regions from miRBase v17, TCGA v6, and UCSC known genes2011
Agilent - SureSelect All Exon V5 50 MbCoding regions from Refseq, GENCODE, UCSC, TCGA, CCDS, and miRBase (21.522 genes)2012
Agilent - SureSelect All Exon V5 + UTRs74 MbCoding regions and 5' and 3' UTR sequences from Refseq, GENCODE, UCSC, TCGA, CCDS, and miRBase (21.522 genes)2012
Agilent - SureSelect All Exon V6 r260 MbCoding regions from RefSeq, CCDS, GENCODE, HGMD, and OMIM2016
Agilent - SureSelect All Exon V6 + COSMIC r266 MbCoding regions from RefSeq, CCDS, GENCODE, HGMD, and OMIM, and targets from both TCGA and COSMIC2016
Agilent - SureSelect All Exon V6 + UTR r275 MbCoding regions and 5' and 3' UTR sequences from RefSeq, GENCODE, CCDS, and UCSC known genes,and miRNAs and lncRNA sequences2016
Agilent - SureSelect All Exon V735.7 MbCoding regions from RefSeq, CCDS, GENCODE, and UCSC known genes2018
Roche - KAPA HyperExome43Mb Coding regions from CCDS, RefSeq, Ensembl, GENCODE,and variants from ClinVar2020
Roche - SeqCap EZ Exome V364 MbCoding regions from RefSeq RefGene CDS, CCDS, and miRBase v14 databases, plus coverage of 97% Vega, 97% Gencode, and 99% Ensembl2018
Roche - SeqCap EZ Exome V3 + UTR92 MbCoding sequences from RefSeq RefGene, CCDS, and miRBase v14, plus coverage of 97% Vega, 97% Gencode, and 99% Ensembl and UTRs from RefSeq RefGene table from UCSC GRCh37/hg19 March 2012 and Ensembl (GRCh37 v64)2018
Roche - SeqCap EZ MedExome47 MbCoding sequences from CCDS 17, RefSeq, Ensembl 76, VEGA 56, GENCODE 20, miRBase 21, and disease-associated regions from GeneTests, ClinVar, and based on customer input2014
Roche - SeqCap EZ MedExome + Mito47 MbCoding sequences and mitochondrial genes from CCDS 17, RefSeq, Ensembl 76, VEGA 56, GENCODE 20 and miRBase 21, disease-associated regions from GeneTests, ClinVar, and based on customer input2014
Illumina - Nextera DNA Exome V1.245 MbCoding regions from RefSeq, CCDS, Ensembl, and GENCODE v192015
Illumina - Nextera Rapid Capture Exome37 Mb212,158 targeted exonic regions with start and stop chromosome locations in GRCh37/hg192013
Illumina - Nextera Rapid Capture Exome V1.237 MbCoding regions from RefSeq, CCDS, Ensembl, and GENCODE v122014
Illumina - Nextera Rapid Capture Expanded Exome66 MbCoding regions from RefSeq, CCDS, Ensembl, and GENCODE v122013
Illumina - TruSeq DNA Exome V1.245 MbCoding regions from RefSeq, CCDS, and Ensembl2017
Illumina - TruSeq Rapid Exome V1.245 MbCoding regions from RefSeq, CCDS, Ensembl, and GENECODE v192015
Illumina - TruSight ONE V1.112 MbCoding regions of 6700 genes from HGMD, OMIM, and GeneTest2017
Illumina - TruSight Exome7 MbDisease-causing mutations as curated by HGMD2017
Illumina - AmpliSeq Exome PanelN/ACCDS coding regions2019
\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser\ or cross-referenced with Data Integrator. The data can be\ accessed from scripts through our API, with track names\ found in the Table Schema page for each subtrack after "Primary Table:".\ \

\ For downloading the data, the annotations are stored in bigBed files that\ can be accessed at\ \ our download directory. \ Regional or the whole genome text annotations can be obtained using our utility \ bigBedToBed. Instructions for downloading utilities can be found\ here.\

\ \

Credits

\ \

\ Thanks to Illumina (U.S.), Roche NimbleGen, Inc. (U.S.), Agilent Technologies (U.S.), MGI Tech\ (Beijing Genomics Institute, China), Twist Bioscience (U.S.), and Integrated DNA Technologies (IDT),\ Inc. (U.S.) for making these data available and to Tiana Pereira, Pranav Muthuraman, Began Nguy\ and Anna Benet-Pages for enginering these tracks.\

\ \ \ \ map 1 allButtonPair on\ compositeTrack on\ group map\ longLabel Exome Capture Probesets and Targeted Region\ shortLabel Exome Probesets\ track exomeProbesets\ type bigBed\ visibility hide\ exoniphy Exoniphy genePred Exoniphy Human/Mouse/Rat/Dog 0 100 173 17 162 214 136 208 0 0 0

Description

\

\ The exoniphy program identifies evolutionarily conserved protein-coding\ exons in a multiple alignment using a phylogenetic hidden Markov\ model (phylo-HMM), a statistical model that simultaneously\ describes exon structure and exon evolution. This track shows exoniphy\ predictions for the human Feb. 2009 (GRCh37), mouse Jul. 2007 (mm9), rat\ Nov. 2004 (rn4), and dog May 2005 (canFam2) genomes, as aligned by the\ multiz program. For this track, only alignments on the "syntenic \ net" between human and each other species were considered. \

\ \

Methods

\

\ For a description of exoniphy, see Siepel et al., 2004.\ Multiz is described in Blanchette et al., 2004.\ The alignment chaining methods behind the "syntenic net" are \ described in Kent et al., 2003.

\ \

Acknowledgments

\

\ Thanks to Melissa Hubisz of the Siepel lab at Cornell University for \ producing these predictions.\

\ \

References

\

\ Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, Roskin KM,\ Baertsch R, Rosenbloom K, Clawson H, Green ED, et al.\ Aligning multiple genomic sequences with the threaded blockset aligner.\ Genome Res. 2004 Apr;14(4):708-15.\ PMID: 15060014; PMC: PMC383317\

\ \

\ Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\ Evolution's cauldron:\ duplication, deletion, and rearrangement in the mouse and human genomes.\ Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\ PMID: 14500911; PMC: PMC208784\

\ \

\ Siepel A, Haussler D. \ Computational identification of evolutionarily conserved\ exons. RECOMB '04. 2004.

\ genes 1 color 173,17,162\ group genes\ longLabel Exoniphy Human/Mouse/Rat/Dog\ shortLabel Exoniphy\ track exoniphy\ type genePred\ visibility hide\ wgEncodeOpenChromFaireViewSignal FAIRE F-Seq Density Signal bed 3 Open Chromatin by FAIRE from ENCODE/OpenChrom(UNC Chapel Hill) 2 100 0 0 0 127 127 127 1 0 0 regulation 1 autoScale off\ longLabel Open Chromatin by FAIRE from ENCODE/OpenChrom(UNC Chapel Hill)\ maxHeightPixels 100:32:16\ maxLimit 0.3\ minLimit 0\ parent wgEncodeOpenChromFaire\ shortLabel FAIRE F-Seq Density Signal\ track wgEncodeOpenChromFaireViewSignal\ view SIG\ viewLimits 0:0.03\ visibility full\ windowingFunction mean+whiskers\ gnomADPextFallopianTube Fallopian Tube bigWig 0 1 gnomAD pext Fallopian Tube 0 100 255 204 204 255 229 229 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/FallopianTube.bw\ color 255,204,204\ longLabel gnomAD pext Fallopian Tube\ parent gnomadPext off\ shortLabel Fallopian Tube\ track gnomADPextFallopianTube\ visibility hide\ fantom5 FANTOM5 FANTOM5: Mapped transcription start sites (TSS) and their usage 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\

\ \

Display Conventions and Configuration

\

\ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

\ \

Methods

\

Protocol

\

\ Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE\ (Kanamori-Katyama et al. 2011).\

    \
  • hCAGE
    • \
  • LQhCAGE
    • \
\

\

Samples

\

\ Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\

    \
  • Primary cell
    • \
  • Tissue
    • \
  • Cell Line
    • \
  • Time course
    • \
  • Fractionation
    • \
\

\

TSS peaks and enhancers

\

\ TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They \ are named as "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or\ "p@CHROM:START..END,STRAND" otherwise. The CAGE data is also used to produce an atlas of active, in\ vivo-transcribed enhancers (Andersson et al. 2014). The summary tracks consist of the TSS (CAGE)\ peaks, and summary profiles of TSS activities (total and maximum values). The summary track consists of the\ following tracks.\

    \
  • TSS (CAGE) peaks\
      \
    • the robust peaks
      • \
    \
  • Enhancers
    • \ \
  • TSS summary profiles\
      \
    • Total counts and TPM (tags per million) in all the samples
      • \
    • Maximum counts and TPM among the samples
      • \
    \
    • \
\ \

TSS activity

\

\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag\ starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read\ counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as\ TPM (tags per million).\

\ \
\
Categories of individual samples
\
- Cell Line hCAGE
\
- Cell Line LQhCAGE
\
- fractionation hCAGE
\
- Primary cell hCAGE
\
- Primary cell LQhCAGE
\
- Time course hCAGE
\
- Tissue hCAGE
\
\ \

FANTOM-NET enhancers

\

\ A set of enhancers consist of the ones identified by Andersson et al. 2014 and the ones by Hirabayashi\ et al. 2019

\ \

FANTOM CAT

\

\ FANTOM CAGE associated transcriptome (FANTOM CAT) is a meta-assembly where FANTOM5 CAGE datasets\ were integrated with transcript models from diverse sources. Transcription Initiation Evidence Score\ (TIEScore) is a custom metric that evaluates the properties of a pair of CAGE cluster and transcript\ model to quantify the likelihood that the corresponding CAGE transcription start site (TSS) is\ genuine. TIEScore was first applied to each of the five transcript model collections separately\ and then merged into a non-redundant transcript set. Specifically, the transcript models from\ GENCODEv19 were used as the initial reference to sequentially overlay onto them the transcripts\ from the other four collections, in sequence of Human BodyMap 2.0, miTranscriptome, ENCODE, and\ FANTOM5 RNA-seq assembly. For more details, please refer to Hon et al. 2017.\

\ \

Data Access

\

\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.

\ \

Credits

\

\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.

\ \

References

\

\ Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C,\ Suzuki T et al.\ \ An atlas of active enhancers across human cell types and tissues.\ Nature. 2014 Mar 27;507(7493):455-461.\ PMID: 24670763; PMC: PMC5215096\

\ \

\ FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\ Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\ \ A promoter-level mammalian expression atlas.\ Nature. 2014 Mar 27;507(7493):462-70.\ PMID: 24670764; PMC: PMC4529748\

\ \

\ Hirabayashi S, Bhagat S, Matsuki Y, Takegami Y, Uehata T, Kanemaru A, Itoh M, Shirakawa K, Takaori-\ Kondo A, Takeuchi O et al.\ \ NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements.\ Nat Genet. 2019 Sep;51(9):1369-1379.\ PMID: 31477927\

\ \

\ Hon CC, Ramilowski JA, Harshbarger J, Bertin N, Rackham OJ, Gough J, Denisenko E, Schmeier S,\ Poulsen TM, Severin J et al.\ \ An atlas of human long non-coding RNAs with accurate 5' ends.\ Nature. 2017 Mar 9;543(7644):199-204.\ PMID: 28241135; PMC: PMC6857182\

\ \ \

\ Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\ N, Daub CO et al.\ \ Unamplified cap analysis of gene expression on a single-molecule sequencer.\ Genome Res. 2011 Jul;21(7):1150-9.\ PMID: 21596820; PMC: PMC3129257\

\ \

\ Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\ Ishikawa-Kato S et al.\ \ Gateways to the FANTOM5 promoter level mammalian expression atlas.\ Genome Biol. 2015 Jan 5;16(1):22.\ PMID: 25723102; PMC: PMC4310165\

\ regulation 0 group regulation\ html fantom5.html\ longLabel FANTOM5: Mapped transcription start sites (TSS) and their usage\ shortLabel FANTOM5\ superTrack on\ track fantom5\ visibility hide\ femaleView Female bed 3 deCODE Recombination maps, 10Kb bin size, October 2010 0 100 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 1 longLabel deCODE Recombination maps, 10Kb bin size, October 2010\ parent decodeRmap\ shortLabel Female\ track femaleView\ view female\ visibility hide\ wgEncodeOpenChromDnaseFibroblPk Fibrob Pk narrowPeak Fibrobl DNaseI HS Peaks from ENCODE/Duke 3 100 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Fibrobl DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Fibrob Pk\ subGroups view=Peaks cellType=t3FIBROBL treatment=zNONE\ track wgEncodeOpenChromDnaseFibroblPk\ type narrowPeak\ fishClones FISH Clones bed 5 + Clones Placed on Cytogenetic Map Using FISH 0 100 0 150 0 127 202 127 0 0 0

Description

\

\ This track shows the location of fluorescent in situ hybridization \ (FISH)-mapped clones along the assembly sequence. The locations of\ these clones were obtained from the NCBI Human BAC Resource\ here. Earlier versions of this track obtained this\ information directly from the paper Cheung, et al. (2001).\

\ \

\ More information about the BAC clones, including how they may be obtained, \ can be found at the \ Human BAC Resource and the \ Clone Registry web sites hosted by \ NCBI.\ To view Clone Registry information for a clone, click on the clone name at \ the top of the details page for that item.

\ \

Using the Filter

\

\ This track has a filter that can be used to change the color or \ include/exclude the display of a dataset from an individual lab. This is \ helpful when many items are shown in the track display, especially when only \ some are relevant to the current task. The filter is located at the top of \ the track description page, which is accessed via the small button to the \ left of the track's graphical display or through the link on the track's \ control menu. To use the filter:\

    \
  1. In the pulldown menu, select the lab whose data you would like to \ highlight or exclude in the display. \
  2. Choose the color or display characteristic that will be used to highlight \ or include/exclude the filtered items. If "exclude" is chosen, the \ browser will not display clones from the lab selected in the pulldown list. \ If "include" is selected, the browser will display clones only \ from the selected lab.\

\

\ When you have finished configuring the filter, click the Submit \ button.

\ \

Credits

\

\ We would like to thank all of the labs that have contributed to this resource:\

\ \

References

\

\ Cheung VG, Nowak N, Jang W, Kirsch IR, Zhao S, Chen XN, Furey TS, Kim UJ, Kuo WL, Olivier M et\ al.\ \ Integration of cytogenetic landmarks into the draft sequence of the human genome.\ Nature. 2001 Feb 15;409(6822):953-8.\ PMID: 11237021\

\ map 1 color 0,150,0,\ group map\ longLabel Clones Placed on Cytogenetic Map Using FISH\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel FISH Clones\ track fishClones\ type bed 5 +\ visibility hide\ fosEndPairs Fosmid End Pairs bed 6 + Fosmid End Pairs 0 100 0 0 0 90 90 90 0 0 0

Description

\

A valid pair of fosmid end sequences must be\ at least 30 kb but no more than 50 kb away from each other. \ The orientation of the first fosmid end sequence must be "+" and\ the orientation of the second fosmid end sequence must be "-".

\ \

Note: For hg19 and hg18 assemblies, the Fosmid \ End Pairs track is a main track under the "Mapping and \ Sequencing" track category.

\ \

On the hg38 assembly, the FOSMID End Pairs track is a subtrack \ within the Clone Ends track under the "Mapping and \ Sequencing" track category. Under the list of subtracks on the \ Clone Ends Track Settings page, the FOSMID End Pairs track is now named \ "WIBR-2 Fosmid library." With the \ WIBR-2 Fosmid library track\ setting on full, individual clone end mapping items are\ listed in the browser; click into any item to see details from NCBI. \ \

Methods

End sequences were trimmed at the NCBI using\ ssahaCLIP written by Jim Mullikin. Trimmed fosmid end sequences were\ placed on the assembled sequence using Jim Kent's \ blat\ program.

\ \

Credits

\

Sequencing of the fosmid ends was done at the \ Eli & Edythe L. Broad\ Institute of MIT and Harvard University. Clones are available through the\ BACPAC Resources\ Center at Children's Hospital Oakland Research Institute (CHORI).\

\ map 1 altColor 90,90,90\ color 0,0,0\ exonArrows off\ group map\ longLabel Fosmid End Pairs\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel Fosmid End Pairs\ track fosEndPairs\ type bed 6 +\ visibility hide\ wgEncodeFsuRepliChip FSU Repli-chip bigWig Replication Timing by Repli-chip from ENCODE/FSU 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

This track displays replication timing and was produced as part \ of the ENCODE Project. Replication timing refers to the order in\ which DNA is duplicated during the synthesis phase of the cell\ cycle and is correlated with the expression of genes and the structure\ of chromosomes. This track shows genome-wide assessment of DNA replication\ timing in cell lines using NimbleGen tiling CGH microarrays. Each experiment\ represents the relative enrichment of early versus late S-phase nascent strands\ in a given cell line, with data represented as a loess-smoothed function\ of individual timing values at probes spaced at even intervals across \ the genome. Regions with high values indicate domains of early replication where\ initiation occurs earlier in S-phase. \

\ \

Display Conventions and Configuration

\

\ The graph displays a wavelet-smoothed signal of mean early/late S-phase ratios.\ Metadata for a particular subtrack can be found by clicking the down arrow\ in the list of subtracks.

\ \ \

Methods

\ \

Experimental Procedures

\

\ Cells were grown according to the approved\ ENCODE cell culture protocols.\ Methods for replication timing profile creation and analysis are described in detail in \ Hiratani et al. (2008) and Ryba et al. (June 2011).\ Methods for individual stages of extraction, hybridization, scanning and\ processing are summarized below.

\ \

\ For the extraction protocol, replication timing data were obtained by hybridizing\ early and late replication intermediates to NimbleGen oligonucleotide arrays. \ Replication intermediates were prepared from cells that were first pulse-labeled\ with 5'-bromo-2'-deoxyuridine (BrdU) and then sorted into early and late stages\ of S-phase by flow cytometry, followed by anti-BrdU immunoprecipitation of the \ BrdU-substituted (nascent) replication intermediates newly synthesized either \ early or late during S-phase. Samples were labeled after unbiased amplification\ of recovered DNA by whole-genome amplification (WGA; Sigma, GenomePlex). \

\ \

\ The hybridization set used the \ \ NimbleGen standard hybridization protocol. Cy3- and Cy5-labeled DNA samples (6 µg each)\ were co-hybridized to Nimblegen CGH arrays containing evenly-spaced oligonucleotide\ probes across the human genome, with a median probe spacing of 1.1-5.8 kb. \ No differences in smoothed data have been detected with probe densities from 100 bp to 5.8 kb. The NimbleGen MS 200 2 µm resolution scanner and GenePix software\ were used per \ NimbleGen's standard scanning protocol.\

\ \

Data Processing

\

\ NimbleScan software was used to obtain .pair raw data per\ manufacturer's instructions. Raw early/late data (i.e. from .pair files) from \ two independent biological replicates, in which early- and late-replicating DNA\ were labeled reciprocally, were loess-normalized to remove signal intensity-dependent bias.\ The data were then scaled to a reference data set to have the same median absolute deviation\ and then averaged (limma package, R/Bioconductor). The mean early/late ratios were\ used to generate a final smoothed profile (i.e. processed data) using local polynomial\ smoothing (loess, 300 kb span) for each chromosome using basic functions in\ the statistical language R. \

\ \ \

Verification

\ \

\ Technical data quality was assessed by verifying high autocorrelation between neighboring timing values. \ Biological identity was confirmed by verifying consistent early or late replication by PCR at individual loci, as well as uniformity in replication profiles between replicate experiments.\

\ \

Release Notes

\

\ This is Release 2 (July 2012) of this track. It adds 6 more data sets including additional replicates for\ H1-hESC and H7-hESC and all new data for the iPS skin fibroblast bio samples.\

\ \

Credits

\ \

These data were generated by the Florida State University ENCODE group.

\

Contact: \ David M. Gilbert\ \

\ \

References

\ \ \ \

\ Hiratani I, Ryba T, Itoh M, Rathjen J, Kulik M, Papp B, Fussner E, Bazett-Jones DP, Plath K, Dalton S et al.\ \ Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis.\ Genome Res. 2010 Feb;20(2):155-69.\

\ \

\ Hiratani I, Ryba T, Itoh M, Yokochi T, Schwaiger M, Chang CW, Lyou Y, Townes TM, Schübeler D, Gilbert DM.\ \ Global reorganization of replication domains during embryonic stem cell differentiation.\ PLoS Biol. 2008 Oct 7;6(10):e245.\

\ \

\ Pope BD, Tsumagari K, Battaglia D, Ryba T, Hiratani I, Ehrlich M, Gilbert DM.\ \ DNA replication timing is maintained genome-wide in primary human myoblasts independent of D4Z4 contraction in FSH muscular dystrophy.\ PLoS One. 2011;6(11):e27413.\

\ \

\ Ryba T, Battaglia D, Pope BD, Hiratani I, Gilbert DM.\ \ Genome-scale analysis of replication timing: from bench to bioinformatics.\ Nat Protoc. 2011 Jun;6(6):870-95.\

\ \

\ Ryba T, Hiratani I, Lu J, Itoh M, Kulik M, Zhang J, Schulz TC, Robins AJ, Dalton S, Gilbert DM.\ \ Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types.\ Genome Res. 2010 Jun;20(6):761-70.\

\ \

\ Ryba T, Hiratani I, Sasaki T, Battaglia D, Kulik M, Zhang J, Dalton S, Gilbert DM.\ \ Replication timing: a fingerprint for cell identity and pluripotency.\ PLoS Comput Biol. 2011 Oct;7(10):e1002225.\

\ \ \ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

\ \ regulation 0 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell\ dimensions dimensionX=cellType dimensionY=rep\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line replicate=Rep view=View platform=Platform labExpId=Lab_ID dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ group regulation\ html wgEncodeFsuRepliChip.release2\ longLabel Replication Timing by Repli-chip from ENCODE/FSU\ maxHeightPixels 100:32:16\ priority 0\ shortLabel FSU Repli-chip\ sortOrder cellType=+ rep=+\ subGroup1 view Views WaveSignal=Wavelet-smoothed_Signal\ subGroup2 cellType Cell_Line t1H1HESC=H1-hESC (Tier_1) t2HELAS3=HeLa-S3 (Tier_2) t2IMR90=IMR90 (Tier_2) t3BG02ES=BG02ES t3GM06990=GM06990 t3H7HESC=H7-hESC t3H9ES=H9-hESC t3IPSHFIB2IPS4=iPS_hFib2_iPS4 t3IPSHFIB2IPS5=iPS_hFib2_iPS5\ subGroup3 rep Rep rep1=1 rep2=2 rep3=3\ track wgEncodeFsuRepliChip\ type bigWig\ viewLimits -2:2\ visibilityViewDefaults WaveSignal=hide\ windowingFunction mean+whiskers\ gad GAD View bed 4 Genetic Association Studies of Complex Diseases and Disorders 0 100 200 0 0 227 127 127 0 0 0 http://geneticassociationdb.nih.gov/cgi-bin/tableview.cgi?table=allview&cond=gene=

Disclaimer

\

\ The Genetic Association Database (GAD) is intended for use primarily by \ medical scientists and other professionals concerned with genetic disorders, \ by genetics researchers, and by advanced students in science \ and medicine. While the GAD database is open to the public, \ users seeking information about a personal medical or \ genetic condition are urged to consult with a qualified \ physician for diagnosis and for answers to personal questions.\ These data are provided by the GAD\ and do not represent any additional curation by UCSC.

\ \

Description

\

\ After serving the scientific community for more than 10 years, \ the Genetic Association Database (GAD) has been retired and all data is "frozen" as of 09/01/2014.\

\

\ The \ Genetic Association Database is an archive of human genetic \ association studies of complex diseases and disorders. The goal \ of the database is to allow the user to rapidly identify medically \ relevant polymorphism from the large volume of polymorphism and \ mutational data, in the context of standardized nomenclature.\

\

If the track is displayed in "pack" or "full" mode, \ mousing over an entry of this track will show a pop-up message listing all \ associated diseases. \ In "full" mode, each feature is labeled with the associated disease \ class code (as defined below). \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    Disease Class Disease Class Code
    AGING AGE
    CANCER CAN
    CARDIOVASCULAR CARD
    CHEMICAL DEPENDENCY CHEM
    DEVELOPMENTAL DEV
    HEMATOLOGICAL HEM
    IMMUNE IMM
    INFECTION INF
    METABOLIC MET
    MITOCHONDRIAL MITO
    NEUROLOGICAL NEUR
    NORMAL VARIATION NV
    OTHER OTH
    PHARMACOGENOMICS PHARM
    PSYCHIATRIC PSY
    RENAL REN
    REPRODUCTION REP
    UNKNOWN UNK
    VISION VIS
    \
\ \

Methods

\

\ Study data are recorded in the context of official human gene \ nomenclature with additional molecular reference numbers and links. The data\ are gene-centered; that is, each record is based on a gene or marker. \ For example, if a study investigated six genes for a particular disorder, \ there will be six records. Gene information is standardized and annotated with \ molecular information, enabling integration with other molecular and genomic \ data resources.\

\ \

Data

\

\ Data are added to GAD on a periodic\ basis by the curator or investigators. A majority of the records in GAD\ are extracted from the online \ HuGE Navigator \ database, which is sponsored by the Centers for Disease Control and \ Prevention. HuGE Navigator\ provides access to a continuously updated, curated knowledge base of\ gene-disease associations, meta-analyses, and related information on genes\ and diseases extracted from NCBI PubMed. A gene-centered view is available via\ Genopedia.\

\ \ \

Contacts

\

\ For more information on this dataset, contact \ Kevin G. Becker, PhD,\ \ Yongqing Zhang, PhD, and John Garner, MS, \ from the DNA Array Unit, NIA, NIH.\

\ \

References

\

\ Becker KG, Barnes KC, Bright TJ, Wang AS. \ The Genetic Association Database. \ Nature Genetics 2004 May; 36(5):431-432.\

\ phenDis 1 color 200,0,0\ group phenDis\ longLabel Genetic Association Studies of Complex Diseases and Disorders\ shortLabel GAD View\ track gad\ type bed 4\ url http://geneticassociationdb.nih.gov/cgi-bin/tableview.cgi?table=allview&cond=gene=\ visibility hide\ gap Gap bed 3 + Gap Locations 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This track depicts gaps in the assembly. These gaps — with the\ exception of intractable heterochromatic gaps — will be closed during the\ finishing process.

\

\ Gaps are represented as black boxes in this track.\ If the relative order and orientation of the contigs on either side\ of the gap is known, it is a bridged gap and a white line is drawn \ through the black box representing the gap.

\

\ This assembly contains the following principal types of gaps:\

    \
  • Clone — gaps between clones in the same map contig. These\ may be bridged or not.\
  • Contig — non-bridged gaps between map contigs.\
  • Centromere — non-bridged gaps from centromeres.\
  • Telomere — non-bridged gaps from telomeres.\
  • Heterochromatin — non-bridged gaps from large blocks of heterochromatin.\
  • Short Arm — non-bridged long gaps on the short arm of the chromosome.\

\ \

See also

\

\ NCBI discussion of genome\ \ assembly procedures.\

\ \

Credits

\

\ The Feb. 2009 human reference sequence (GRCh37) was produced by the\ \ Genome Reference Consortium.\

\ map 1 group map\ longLabel Gap Locations\ shortLabel Gap\ track gap\ type bed 3 +\ visibility hide\ gc5Base GC Percent wig 0 100 GC Percent in 5-Base Windows 0 100 0 0 0 128 128 128 0 0 0

Description

\

\ The GC percent track shows the percentage of G (guanine) and C (cytosine) bases\ in 5-base windows. High GC content is typically associated with\ gene-rich areas.\

\

\ This track may be configured in a variety of ways to highlight different\ apsects of the displayed information. Click the\ "Graph configuration help"\ link for an explanation of the configuration options.\ \

Credits

\

The data and presentation of this graph were prepared by\ Hiram Clawson.\

\ \ map 0 altColor 128,128,128\ autoScale Off\ color 0,0,0\ graphTypeDefault Bar\ gridDefault OFF\ group map\ longLabel GC Percent in 5-Base Windows\ maxHeightPixels 128:36:16\ shortLabel GC Percent\ spanList 5\ track gc5Base\ type wig 0 100\ viewLimits 30:70\ visibility hide\ windowingFunction Mean\ genCC GenCC bigBed 9 + 33 GenCC: The Gene Curation Coalition Annotations 0 100 0 0 0 127 127 127 0 0 0 https://search.thegencc.org/genes/$

Description

\ \

\ This track shows annotations from The Gene Curation Coalition (GenCC).\ The GenCC provides information pertaining to the validity of gene-disease relationships, \ with a current focus on Mendelian diseases. Curated gene-disease relationships are submitted \ by GenCC member organizations that currently provide online resources (e.g. ClinGen, DECIPHER, \ Orphanet, etc.), as well as diagnostic laboratories that have committed to sharing their internal \ curated gene-level knowledge (e.g. Ambry Genetics, Illumina, Invitae, etc.).

\

\ The GenCC aims to clarify overlap between gene curation efforts and develop\ consistent terminology for validity, allelic requirement and mechanism\ of disease. Each item on this track corresponds with a gene, and contains\ a large number of information such as associated disease, evidence classification,\ specific submission notes and identifiers from different databases. In cases where\ multiple annotations exist for the same gene, multiple items are displayed.

\ \

Display Conventions and Configuration

\

\ Each item displayed represents a submission to the GenCC database. The displayed \ name is a combination of the gene symbol and the disease's original submission ID. \ This submission ID is either the OMIM#, MONDO# or Orphanet#. Clicking\ on any item will display the complete meta data for that item, including\ linkouts to the GenCC, NCBI, Ensembl, HGNC, GeneCards, Pombase (MONDO),\ and Human Phenotype Ontology (HPO). Mousing over any item will display the\ associated disease title, the classification title, and the mode of inheritance\ title.

\ \

\ Items are colored based on the GenCC classification, or validation, of the\ evidence in the color scheme seen in the table below. \ For more information on this process, see the GenCC\ validity terms FAQ. A filter for the track is also available\ to display a subset of the items based on their classification.

\ \

\ \ \ \ \ \ \ \ \ \ \ \ \ \
ColorEvidence classification
Definitive
Strong
Moderate
Supportive
Limited
Disputed Evidence
Refuted Evidence
No Known Disease Relationship
\

\ \

\ Limitations: Most entries include both NM_ accessions as well as ENST and ENSG identifiers.\ From the original file, which contains no coordinates, two genes were not mapped\ to the hg38 genome, SLCO1B7 and ATXN8. This means that the hg38 track has 2 fewer items\ than what can be found in the GenCC download file. For hg19, one additional\ gene was not mapped, KCNJ18. In addition to this, the GenCC data in the Genome\ Browser does not include OMIM data due to licensing restrictions. For more\ information, see the Methods section below.

\ \

Data Access

\

\ The source data can be explored in \ GenCC database. The source files can also be found on the GenCC downloads page.

\ \

\ The GenCC data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored at UCSC in bigBed\ files that can be downloaded from\ our download server.\ The data may also be explored interactively using our\ REST API.

\ \

\ The file for this track may also be locally explored using our tools bigBedToBed \ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

\ bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi/genCC.bb stdout

\ \

Methods

\

\ The data were downloaded from the GenCC downloads page in tsv format. Manual\ curation was performed on the file to remove newline characters and tab characters present in \ the submission notes, in total fewer than 20 manual edits were made.

\

\ The track was first built on hg38 by associating the gene symbols with the NCBI MANE 1.0 \ release transcripts. These coordinates were added to the items as well as the NM_ accession,\ ENST ID and ENSG ID. For items where there was no gene symbol match in MANE (~130), the gene\ symbols were queried against GENCODEv40 comprehensive set release. In places where multiple\ transcript matches were found, the earliest transcription start and latest end site was used\ from among the transcripts to encompass the entire gene coordinates. Two genes were not able\ to be mapped for hg38, SLCO1B7 and ATXN8, resulting in two missing submissions in the Genome\ Browser when compared to the raw file. Lastly, the items were colored according to their\ evidence classification as seen on the GenCC database.

\

\ For hg19, the hg38 NM_ accessions were used to convert the item coordinates according to the\ latest hg19 refseq release. For items that failed to convert, the gene symbols were queried\ using the GENCODEv40 hg19 lift comprehensive set. One additional gene symbol failed to map in\ hg19, KCNJ18, leading to 3 fewer items on this track when compared to the raw file.

\

\ For both assemblies, GenCC OMIM data is excluded do to data restrictions.\ For complete documentation of the processing of these tracks, read the\ \ GenCC MakeDoc.

\ \

Credits

\

\ Thanks to the entire GenCC\ committee for creating these annotations and making them available.

\ \

References

\

\ DiStefano MT, Goehringer S, Babb L, Alkuraya FS, Amberger J, Amin M, Austin-Tse C, Balzotti M, Berg\ JS, Birney E et al.\ \ The Gene Curation Coalition: A global effort to harmonize gene-disease evidence resources.\ Genet Med. 2022 May 4;.\ PMID: 35507016\

\ phenDis 1 bigDataUrl /gbdb/hg19/bbi/genCC.bb\ filterLabel.classification_title evidence classification\ filterValues.classification_title Supportive,Strong,Definitive,Limited,Moderate,No Known Disease Relationship,Disputed Evidence,Refuted Evidence\ group phenDis\ itemRgb on\ longLabel GenCC: The Gene Curation Coalition Annotations\ mouseOver $disease_title - $classification_title - $moi_title\ shortLabel GenCC\ track genCC\ type bigBed 9 + 33\ url https://search.thegencc.org/genes/$\ urlLabel Link to GenCC Gene page\ urls ensTranscript="https://useast.ensembl.org/Multi/Search/Results?q=$$;site=ensembl_all" ensGene="https://useast.ensembl.org/Multi/Search/Results?q=$$;site=ensembl_all" refSeqAccession="https://www.ncbi.nlm.nih.gov/clinvar/?term=$$" uuid="https://search.thegencc.org/submissions/$$" gene_curie="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$$" gene_symbol="https://www.genecards.org/cgi-bin/carddisp.pl?gene=$$" disease_curie="https://www.pombase.org/term/$$" moi_curie="https://hpo.jax.org/app/browse/term/$$"\ wgEncodeGencodeSuper GENCODE Versions Container of all new and previous GENCODE releases 0 100 0 0 0 127 127 127 0 0 0

\

Description

\

\ The aim of the GENCODE \ Genes project (Harrow et al., 2006) is to produce a set of \ highly accurate annotations of evidence-based gene features on the human reference genome.\ This includes the identification of all protein-coding loci with associated\ alternative splice variants, non-coding with transcript evidence in the public \ databases (NCBI/EMBL/DDBJ) and pseudogenes. A high quality set of gene\ structures is necessary for many research studies such as comparative or \ evolutionary analyses, or for experimental design and interpretation of the \ results.

\

\ The GENCODE Genes tracks display the high-quality manual annotations merged \ with evidence-based automated annotations across the entire\ human genome. The GENCODE gene set presents a full merge\ between HAVANA manual annotation and Ensembl automatic annotation.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations. With \ each release, there is an increase in the number of annotations that have undergone\ manual curation. \ This annotation was carried out on the GRCh37 (hg19) genome assembly.\

\

Experimental verification details are given in each descriptions for each\ track. Transcript Support Levels were determined for version 10 onwards based \ on evidence provided by GenBank mRNA and EST sequences. Versions 7 and 10 are\ being used in data analysis by the ENCODE consortium.

\ \ NOTE: Due to the UCSC Genome Browser using the NC_001807 mitochondrial \ genome sequence\ (chrM) and GENCODE annotating the NC_012920 mitochondrial sequence, the\ GENCODE mitochondrial sequences are not available in the UCSC Genome Browser.\ These annotations are available for download in the \ GENCODE GTF files.\

\ \

\ For more information on the different gene tracks, see our Genes FAQ.

\ \

Display Conventions

\

\ These are multi-view composite tracks that contain differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ Only some subtracks are shown by default. The user can select which subtracks\ are displayed via the display controls on the track details pages.\ Further details on display conventions and data interpretation are available in the track descriptions.

\ \

Data access

\

\ GENCODE Genes and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator.\ The GENCODE data files for hg19 are available in our\ \ downloads directory as wgEncodeGencode* in genePred format.\ All the tables can also be queried directly from our public MySQL\ servers, with instructions on this method available on our\ MySQL help page and on\ our blog.

\ \

Release Notes

\

\ GENCODE version 46lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 112.\

\

\ GENCODE version 45lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 111.\

\

\ GENCODE version 43lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 109.\

\

\ GENCODE version 42lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 108.\

\

\ GENCODE version 41lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 107.\

\

\ GENCODE version 40lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 106.\

\

\ GENCODE version 39lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 105.\

\

\ GENCODE version 38lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 104.\

\

\ GENCODE version 37lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 103.\

\

\ GENCODE version 36lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 102.\

\

\ GENCODE version 35lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 101.\

\

\ GENCODE version 34lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 100.\

\

\ GENCODE version 33lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 99.\

\

\ GENCODE version 30lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 96.\

\

\ GENCODE version 29lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 94.\

\

\ GENCODE version 28lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 92.\

\

\ GENCODE version 27lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 90.\

\

\ GENCODE version 24lift37 (mapped from GRCh38 to GRCh37)\ corresponds to Ensembl 83.\

\ GENCODE version 19 corresponds to Ensembl 74 and Vega 54.\

\ GENCODE version 17\ corresponds to Ensembl 72 and Vega 52.\

\ GENCODE version 14\ corresponds to Ensembl 69 and Vega 49\

\ GENCODE version 7\ corresponds to Ensembl 62 and Vega 42 \ and is used in ENCODE analysis.\

\

\ See also: The GENCODE Project Release History.\

\ \

Credits

\

The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

\ \

References

\

\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

\ \ \

A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ \ genes 0 group genes\ longLabel Container of all new and previous GENCODE releases\ pennantIcon New red ../goldenPath/newsarch.html#060724 "June 7, 2024"\ shortLabel GENCODE Versions\ superTrack on\ track wgEncodeGencodeSuper\ interactions Gene Interactions bigBed 9 Protein Interactions from Curated Databases and Text-Mining 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ The Pathways and Gene Interactions track shows a summary of gene interaction and pathway data\ collected from two sources: curated pathway/protein-interaction databases and interactions found\ through text mining of PubMed abstracts.

\ \

Display Conventions and Configuration

\

Track Display

\

\ The track features a single item for each gene loci in the genome. On the item itself, the gene\ symbol for the loci is displayed followed by the top gene interactions noted by their gene symbol.\ Clicking an item will take you a\ gene interaction graph\ that includes detailed information on the support for the various interactions.

\ \

\ Items are colored based on the number of documents supporting the interactions of a\ particular gene. Genes with >100 supporting documents are colored\ black, genes with >10 but <100\ supporting documents are colored dark blue, and\ those with >10 supporting documents are colored\ light blue.

\ \

Pathway and Gene Interaction Display

\

\ See the\ help documentation\ accompanying this gene interaction graph for more information on its configuration.

\ \

Methods

\

\ The pathways and gene interactions were imported from a number of databases and mined from\ millions of PubMed abstracts. More information can be found in the\ "Data Sources\ and Methods"\ section of the help page for the gene interaction graph.

\ \

Data Access

\

\ The underlying data for this track can be accessed interactively through the\ Table Browser or\ Data Integrator. \ The data for this track is spread across a number of relational tables. The best way to \ export or analyze the data is using our public MySQL server.\ The list of tables and how they are linked together are described in the \ documentation \ linked at the bottom of the gene interaction viewer.\

\ \

\ The genome annotation is just a summary of the actual interactions database and therefore often not \ of interest to most users. It is stored in a bigBed file that can be obtained\ from the\ download server.\ \ The data underlying the\ graphical display is in bigBed\ formatted file named interactions.bb. Individual regions or the whole genome annotation\ can be obtained using our tool bigBedToBed. Instructions\ for downloading source code and precompiled binaries can be found\ here. The tool can also\ be used to obtain only features within a given range, for example:\

\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi/interactions.bb\ -chrom=chr6 -start=0 -end=1000000 stdout\

\ \

Credits

\

\ The text-mined data for the gene interactions and pathways were generated by Chris Quirk and\ Hoifung Poon as part of\ Microsoft Research, Project\ Hanover.

\ \

\ Pathway data was provided by the databases listed under\ "Data Sources\ and Methods"\ section of the help page for the gene interaction graph.\ In particular, thank you to Ian Donaldson from IRef for his\ unique collection of interaction databases.

\ \

\ The short gene descriptions are a merge of the HPRD\ and PantherDB gene/molecule classifications. Thanks to Arun Patil from\ HPRD for making them available as a download.

\ \

\ The track display and gene interaction graph\ were developed at the UCSC Genome Browser by Max Haeussler.

\ \

References

\

\ Poon H, Quirk C, DeZiel C, Heckerman D.\ Literome: PubMed-scale genomic knowledge base in the cloud\ Bioinformatics. 2014 Oct;30(19):2840-2.\ PMID: 24939151

\ phenDis 1 bigDataUrl /gbdb/hg19/bbi/interactions.bb\ directUrl hgGeneGraph?db=hg19&gene=%s\ exonNumbers off\ group phenDis\ hgsid on\ itemRgb on\ labelOnFeature on\ linkIdInName on\ longLabel Protein Interactions from Curated Databases and Text-Mining\ noScoreFilter on\ shortLabel Gene Interactions\ track interactions\ type bigBed 9\ visibility hide\ ghGeneTss Gene TSS bigBed 9 GeneHancer Regulatory Elements and Gene Interactions 3 100 0 0 0 127 127 127 0 0 0 http://www.genecards.org/cgi-bin/carddisp.pl?gene=$$ regulation 1 itemRgb on\ longLabel GeneHancer Regulatory Elements and Gene Interactions\ parent geneHancer\ searchIndex name\ shortLabel Gene TSS\ track ghGeneTss\ type bigBed 9\ url http://www.genecards.org/cgi-bin/carddisp.pl?gene=$$\ urlLabel In GeneCards:\ view b_TSS\ visibility pack\ geneHancer GeneHancer bed 3 GeneHancer Regulatory Elements and Gene Interactions 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ GeneHancer is a database of human regulatory elements (enhancers and promoters) \ and their inferred target genes, which is embedded \ in GeneCards, a human gene \ compendium.\ The GeneHancer database was created by integrating >1 million regulatory elements \ from multiple genome-wide databases. \ Associations between the regulatory elements and target genes\ were based on multiple sources of linking molecular data, along with distance,\ as described in Methods below.\

\

\ The GeneHancer track set contains tracks representing:\

    \
  • Regulatory elements (GeneHancers)
    • \
  • Gene transcription start sites
    • \
  • Interactions (associations) between regulatory elements and genes
    • \
  • Clustered interactions, by gene target or GeneHancer
    • \
\ The full set of elements and interactions is included, along with a highly filtered \ "double elite" subset.\ \

Display Conventions

\

\ Each GeneHancer regulatory element is identified by a GeneHancer id. \ For example: GH0XJ101383 is located on chromosome X, with starting position of 101,383 kb\ (GRCh38/hg38 reference).\ Based on the id, one can obtain full GeneHancer information, as displayed in the Genomics \ section within the gene-centric web pages of GeneCards. Links to the GeneCards information pages\ are provided on the track details pages.

\ \

\ For the interaction tracks (Clusters and Interactions) a slight offset can be noticed between \ the line endpoints. This helps to identify the start and end of the feature. In this case,\ the higher point is the source (enhancers) and the lower point is the target.

\ \

Regulatory elements

\

\ Colors are used to distinguish promoters and enhancers and to indicate the GeneHancer element confidence score:

\

\ Promoters: \    High\    Medium\    Low\

\

\ Enhancers: \    High\    Medium\    Low\

\ \

Gene TSS

\

\ Colors are used to improve gene and interactions visibility. \ Successive genes are colored in different colors, and interactions of a gene have the same color.

\ \

Interactions

\

\ The Interactions view in Full mode shows GeneHancers and target genes connected by curves or \ half-rectangles (when one of the connected regions is off-screen). \ Configuration options are available to change the drawing style, and to limit the view to\ interactions with one or both connected items in the region.\ Interactions are identified on mouseover or clicked on for details at the end regions, or at \ the curve peak, which is marked with a gray ring shape. Interactions in the reverse direction\ (Gene TSS precedes GeneHancer on the genome) are drawn with a dashed line.\ \

Clusters

\

\ The Clusters view groups interactions by target gene; the target gene and all GeneHancers \ associated with it are displayed in a single browser item. The gene TSS and associated GeneHancers \ are shown as blocks linked together, with the TSS drawn as a "tall" item, and the \ GeneHancers drawn "short". \ A user configuration option is provided to change the view to group by GeneHancer \ (with tall GeneHancer and short TSS's). \ Clusters composed of interactions with a single gene are colored to correspond to the gene, \ and those composed of interactions with multiple genes are colored dark gray.

\ \

Methods

\

\ GeneHancer identifications were created from >1 million regulatory elements \ obtained from seven genome-wide databases:\

    \
  1. ENCODE project\ Z-Lab Enhancer-like regions (version v3)
    2. \
  2. Ensembl regulatory build (version 92)
    3. \
  3. FANTOM5 atlas of active enhancers
    4. \
  4. VISTA Enhancer Browser
    5. \
  5. dbSUPER super-enhancers
    6. \
  6. EPDnew promoters
    7. \
  7. UCNEbase ultra-conserved noncoding elements
    8. \
\

\ Employing an integration algorithm that removes redundancy, the GeneHancer pipeline\ identified ˜250k integrated candidate regulatory elements (GeneHancers).\ Each GeneHancer is assigned an annotation-derived confidence score. \ The GeneHancers that are derived from more than one information source are defined \ as "elite" GeneHancers.

\

\ Gene-GeneHancer associations, and their likelihood-based scores, were generated \ using information that helps link regulatory elements to genes:\

    \
  1. eQTLs (expression quantitative trait loci) from GTEx (version v6p)
    2. \
  2. Capture Hi-C promoter-enhancer long range interactions
    3. \
  3. FANTOM5 eRNA-gene expression correlations
    4. \
  4. Cross-tissue expression correlations between a transcription factor interacting \ with a GeneHancer and a candidate target gene
    5. \
  5. Distance-based associations, including several approaches: \
      \
    1. Nearest neighbors, where each GeneHancer is associated with its two proximal genes
      2. \
    2. Overlaps with the gene territory (intragenic)
      3. \
    3. Proximity to the gene TSS (<2kb)
      4. \
    \

\

\ Associations that are derived from more than one information source are defined \ as "elite" associations, which leads to the definition of the "double elite"\ dataset - elite gene associations of elite GeneHancers.

\

\ More details are provided at the GeneCards\ \ information page.\ For a full description of the methods used, refer to the GeneHancer manuscript1.

\

\ Source data for the GeneHancer version 4.8 was downloaded during May 2018.

\ \

Data Access

\

\ Due to our agreement with the Weizmann Institute, we cannot allow full genome \ queries from the Table Browser or share download files. You can still access \ data for individual chromosomes or positional data from the \ Table Browser.

\ \

\ GeneHancer is the property of the Weizmann Institute of Science and \ is not available for download or mirroring by any third party \ without permission. Please contact the Weizmann Institute directly for \ data inquiries.

\ \

Credits

\

\ Thanks to Simon Fishilevich, Marilyn Safran, Naomi Rosen, and Tsippi Iny Stein of the GeneCards \ group and Shifra Ben-Dor of the Bioinformatics Core group at the Weizmann Institute, \ for providing this data and documentation, creating track hub versions of these tracks \ as prototypes, and overall responsiveness during development of these tracks.

\

\ Contact: \ simon.\ fishilevich@weizmann.\ ac.\ il\ \

\ Supported in part by a grant from LifeMap Sciences Inc.

\ \

References

\

\ Fishilevich S., Nudel R., Rappaport N., Hadar R., Plaschkes I., Iny Stein T., Rosen N., Kohn A., Twik M., Safran M., Lancet D. and Cohen D. GeneHancer: genome-wide integration of enhancers and target genes in GeneCards, Database (Oxford) (2017), doi:10.1093/database/bax028. [PDF] PMID 28605766

\

\ Stelzer G, Rosen R, Plaschkes I, Zimmerman S, Twik M, Fishilevich S, Iny Stein T, Nudel R, Lieder I, Mazor Y, Kaplan S, Dahary, D, Warshawsky D, Guan- Golan Y, Kohn A, Rappaport N, Safran M, and Lancet D. The GeneCards Suite: From Gene Data Mining to Disease Genome Sequence Analysis, Current Protocols in Bioinformatics (2016), 54:1.30.1-1.30.33. doi: 10.1002/cpbi.5. PMID 27322403

\ regulation 1 compositeTrack on\ dataVersion January 2019 (V2: Corrections to Experiment field)\ dimensions dimX=set dimY=view\ group regulation\ longLabel GeneHancer Regulatory Elements and Gene Interactions\ shortLabel GeneHancer\ sortOrder set=+ view=+\ subGroup1 view View a_GH=Regulatory_Elements b_TSS=Gene_TSS c_I=Interactions d_I=Clusters\ subGroup2 set Set a_ELITE=Double_Elite b_ALL=All\ tableBrowser noGenome\ track geneHancer\ type bed 3\ visibility hide\ geneid Geneid Genes genePred geneidPep Geneid Gene Predictions 0 100 0 90 100 127 172 177 0 0 0

Description

\ \

\ This track shows gene predictions from the\ geneid program developed by\ Roderic Guigó's Computational Biology of RNA Processing\ group which is part of the\ Centre de Regulació Genòmica\ (CRG) in Barcelona, Catalunya, Spain.\

\ \

Methods

\ \

\ Geneid is a program to predict genes in anonymous genomic sequences designed\ with a hierarchical structure. In the first step, splice sites, start and stop\ codons are predicted and scored along the sequence using Position Weight Arrays\ (PWAs). Next, exons are built from the sites. Exons are scored as the sum of the\ scores of the defining sites, plus the the log-likelihood ratio of a\ Markov Model for coding DNA. Finally, from the set of predicted exons, the gene\ structure is assembled, maximizing the sum of the scores of the assembled exons.\

\ \

Credits

\ \

\ Thanks to Computational Biology of RNA Processing\ for providing these data.\ \

\ \

References

\

\ Blanco E, Parra G, Guigó R.\ Using geneid to identify genes.\ Curr Protoc Bioinformatics. 2007 Jun;Chapter 4:Unit 4.3.\ PMID: 18428791\

\ \ \

\ Parra G, Blanco E, Guigó R.\ \ GeneID in Drosophila.\ Genome Res. 2000 Apr;10(4):511-5.\ PMID: 10779490; PMC: PMC310871\

\ genes 1 color 0,90,100\ group genes\ html ../../geneid\ longLabel Geneid Gene Predictions\ parent genePredArchive\ shortLabel Geneid Genes\ track geneid\ type genePred geneidPep\ visibility hide\ geneReviews GeneReviews bigBed 9 + GeneReviews 0 100 0 80 0 127 167 127 0 0 0 https://www.ncbi.nlm.nih.gov/books/NBK1116/?term=$$

Description

\ \

\ GeneReviews is an online collection of expert-authored, peer-reviewed\ articles that describe specific gene-related diseases. GeneReviews articles are\ searchable by disease name, gene symbol, protein name, author, or title. GeneReviews\ is supported by the National Institutes of Health, hosted at NCBI as part of the\ \ Genetic Testing Registry (GTR). The GeneReviews data underlying this track will be updated frequently. \

\ \

The GeneReviews track allows the user to locate the NCBI GeneReviews resource\ quickly from the Genome Browser. Hovering the mouse on track items shows the gene symbol and \ associated diseases. A condensed version of the GeneReviews article\ name and its related diseases are displayed on the item details page as links. Similar\ information, when available, is provided in the details page of items from the UCSC Genes,\ RefSeq Genes, and OMIM Genes tracks.\

\ \

Data Access

\

\ The raw data for the GeneReviews track can be explored interactively with the\ Table Browser. Cross-referencing can be done with\ Data Integrator. The complete source file,\ in bigBed format, \ can be downloaded from our\ downloads directory.\ For automated analysis,\ the data may be queried from our\ REST API.\

\ \

\ Previous versions of this track can be found on our archive download server.\

\ \

References

\ \

\ Pagon RA, Adam MP, Bird TD, et al., editors. GeneReviews® [Internet]. Seattle (WA): University of Washington, Seattle; 1993-2014. Available from: \ \ https://www.ncbi.nlm.nih.gov/books/NBK1116.\

\ \ phenDis 1 bigDataUrl /gbdb/hg19/geneReviews/geneReviews.bb\ color 0, 80, 0\ group phenDis\ html geneReviews\ longLabel GeneReviews\ mouseOver $name disease(s): $diseases\ noScoreFilter on\ shortLabel GeneReviews\ track geneReviews\ type bigBed 9 +\ url https://www.ncbi.nlm.nih.gov/books/NBK1116/?term=$$\ visibility hide\ gnomadGenomesAvgCoverage Genome Avg Cover bigWig 0 100 Genome Aggregation Database (gnomAD) Average Genome Sample Coverage 1 100 0 0 0 127 127 127 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,

Description

\

\ The tracks that are listed here contain data from unrelated individuals sequenced as part of\ various population-genetic and disease-specific studies collected by the Genome Aggregation Database (gnomAD).\ Individuals affected by severe pediatric diseases and first-degree relatives were excluded from the\ studies. However, some individuals with severe disease may still have remained in the datasets,\ although probably at an equivalent or lower frequency than observed in the general population. Raw\ data from all studies have been reprocessed using a standardized pipeline and jointly variant-called\ process, which aims to increase consistency between projects. For more information on the processing\ pipeline and population annotations, see the following blog post gnomAD,\ gnomAD v2.1 \ and the 2.0.2 README.

\ \

\ The available data tracks are:\

\

\ \

Display Conventions

\

\ These tracks are multi-view composite tracks that contain multiple data types (views). Each view\ within a track has separate display controls, as described here. Most gnomAD tracks contain\ multiple subtracks, corresponding to subsets of data. If a track contains many subtracks, only some\ subracks will be displayed by default. The user can select which subtracks are displayed via the\ display controls on the track details page.\

\ \

Data Access

\

\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that \ can be downloaded from our download server, subject\ to the conditions set forth by the gnomAD consortium (see below). Coverage values\ for the genome are in bigWig files in\ the coverage/ subdirectory. Variant VCFs can be found in the vcf/ subdirectory.

\

\ The data can also be found directly from the gnomAD downloads page. Please refer to \ our mailing list archives for questions, or our Data Access FAQ for more information.

\ \

\ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\

\ \

Credits

\

\ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the ODC Open Database License\ (ODbL) as described here.\

\ \

References

\ \

\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ \ Analysis of protein-coding genetic variation in 60,706 humans.\ Nature. 2016 Aug 18;536(7616):285-91.\ PMID: 27535533; PMC: PMC5018207\

\ \

\ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ \ The mutational constraint spectrum quantified from variation in 141,456 humans.\ Nature. 2020 May;581(7809):434-443.\ PMID: 32461654; PMC: PMC7334197\

\ \

\ Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\ Gauthier LD, Wang H et al.\ \ A structural variation reference for medical and population genetics.\ Nature. 2020 May;581(7809):444-451.\ PMID: 32461652; PMC: PMC7334194\

\

\ Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\ Satterstrom FK, O'Donnell-Luria AH et al.\ \ Transcript expression-aware annotation improves rare variant interpretation.\ Nature. 2020 May;581(7809):452-458.\ PMID: 32461655; PMC: PMC7334198\

\ \ varRep 0 aggregate none\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX\ html gnomad\ longLabel Genome Aggregation Database (gnomAD) Average Genome Sample Coverage\ maxHeightPixels 100:50:8\ parent gnomadCoverage on\ shortLabel Genome Avg Cover\ showSubtrackColorOnUi on\ track gnomadGenomesAvgCoverage\ type bigWig 0 100\ view gAvg\ viewLimits 0:50\ visibility dense\ gnomadGenomesReadDepthPct Genome Coverage % bigWig 0 1 Genome Aggregation Database (gnomAD) Percentage of Genome Samples with at least nX Coverage 0 100 0 0 0 127 127 127 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,

Description

\

\ The tracks that are listed here contain data from unrelated individuals sequenced as part of\ various population-genetic and disease-specific studies collected by the Genome Aggregation Database (gnomAD).\ Individuals affected by severe pediatric diseases and first-degree relatives were excluded from the\ studies. However, some individuals with severe disease may still have remained in the datasets,\ although probably at an equivalent or lower frequency than observed in the general population. Raw\ data from all studies have been reprocessed using a standardized pipeline and jointly variant-called\ process, which aims to increase consistency between projects. For more information on the processing\ pipeline and population annotations, see the following blog post gnomAD,\ gnomAD v2.1 \ and the 2.0.2 README.

\ \

\ The available data tracks are:\

\

\ \

Display Conventions

\

\ These tracks are multi-view composite tracks that contain multiple data types (views). Each view\ within a track has separate display controls, as described here. Most gnomAD tracks contain\ multiple subtracks, corresponding to subsets of data. If a track contains many subtracks, only some\ subracks will be displayed by default. The user can select which subtracks are displayed via the\ display controls on the track details page.\

\ \

Data Access

\

\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that \ can be downloaded from our download server, subject\ to the conditions set forth by the gnomAD consortium (see below). Coverage values\ for the genome are in bigWig files in\ the coverage/ subdirectory. Variant VCFs can be found in the vcf/ subdirectory.

\

\ The data can also be found directly from the gnomAD downloads page. Please refer to \ our mailing list archives for questions, or our Data Access FAQ for more information.

\ \

\ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\

\ \

Credits

\

\ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the ODC Open Database License\ (ODbL) as described here.\

\ \

References

\ \

\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ \ Analysis of protein-coding genetic variation in 60,706 humans.\ Nature. 2016 Aug 18;536(7616):285-91.\ PMID: 27535533; PMC: PMC5018207\

\ \

\ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ \ The mutational constraint spectrum quantified from variation in 141,456 humans.\ Nature. 2020 May;581(7809):434-443.\ PMID: 32461654; PMC: PMC7334197\

\ \

\ Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\ Gauthier LD, Wang H et al.\ \ A structural variation reference for medical and population genetics.\ Nature. 2020 May;581(7809):444-451.\ PMID: 32461652; PMC: PMC7334194\

\

\ Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\ Satterstrom FK, O'Donnell-Luria AH et al.\ \ Transcript expression-aware annotation improves rare variant interpretation.\ Nature. 2020 May;581(7809):452-458.\ PMID: 32461655; PMC: PMC7334198\

\ \ varRep 0 aggregate none\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX\ html gnomad\ longLabel Genome Aggregation Database (gnomAD) Percentage of Genome Samples with at least nX Coverage\ maxHeightPixels 100:16:8\ parent gnomadCoverage\ shortLabel Genome Coverage %\ showSubtrackColorOnUi on\ track gnomadGenomesReadDepthPct\ type bigWig 0 1\ view gRDepth\ viewLimits 0:1\ visibility hide\ giab Genome In a Bottle bed 3 Genome In a Bottle Structural Variants and Trios 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ The tracks listed here contain data from\ The Genome in a\ Bottle Consortium (GIAB), an open, public consortium hosted by \ NIST. The priority of GIAB is to develop \ reference standards, reference methods, and reference data by authoritative characterization of \ human genomes for use in benchmarking, including analytical validation and technology \ development that will support translation of whole human genome sequencing to clinical practice. The\ sole purpose of this work is to provide validated variants and regions to enable technology and \ bioinformatics developers to benchmark and optimize their detection methods.\

\

\ The Ashkenazim and the Chinese Trio tracks show benchmark SNV calls from two \ son/father/mother trios of Ashkenazi Jewish and Han Chinese ancestry from the \ Personal Genome Project, \ consented for commercial redistribution.\

\

\ The Genome In a Bottle Structural Variants track shows benchmark SV calls (nssv) \ and variant regions (nsv) (5,262 insertions and 4,095 deletions, > 50 bp, in 2.51 Gb of \ the genome) from the son (HG002/NA24385) from the Ashkenazi Jewish trio.\

\

\ Samples are disseminated as National Institute of Standards and Technology (NIST)\ Reference Materials.\

\

Display Conventions and Configuration

\ These tracks are multi-view composite tracks that contain multiple data types (views). Each view \ within a track has separate display controls, as described \ here.\

\

\ Unlike a regular genome browser track, the Ashkenazim and the Chinese Trio tracks display \ the genome variants of each individual as two haplotypes; SNPs, small insertions and deletions\ are mapped to each haplotype based on the phasing information of the VCF file. The\ haplotype 1 and the haplotype 2 are displayed as two separate black lanes for the\ browser window region. Each variant is drawn as a vertical dash. Homozygous variants will\ show two identical dashes on both haplotype lanes. Phased heterozygous variants are placed on\ one of the haplotype lanes and unphased heterozygous variants are displayed in the area\ between the two haplotype lanes.\

\

\ Predicted de novo variants and variants that are inconsistent with phasing in the trio son can be \ colored in red using the track Configuration options.\

\ \

Data Access

\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API.\

\

\ Benchmark VCF and BED files for small variants are available for GRCh37 and GRCh38 under each\ genome at NCBI FTP site. \ Structural variants are available for GRCh37 at dbVAR \ nst175.\

\ \

References

\ \

\ Zook JM, McDaniel J, Olson ND, Wagner J, Parikh H, Heaton H, Irvine SA, Trigg L, Truty R, McLean CY\ et al.\ \ An open resource for accurately benchmarking small variant and reference calls.\ Nat Biotechnol. 2019 May;37(5):561-566.\ PMID: 30936564; PMC: PMC6500473\

\ \

\ Zook JM, Hansen NF, Olson ND, Chapman L, Mullikin JC, Xiao C, Sherry S, Koren S, Phillippy AM,\ Boutros PC et al.\ \ A robust benchmark for detection of germline large deletions and insertions.\ Nat Biotechnol. 2020 Jun 15;.\ PMID: 32541955\

\ \ varRep 1 compositeTrack on\ group varRep\ html giab\ longLabel Genome In a Bottle Structural Variants and Trios\ shortLabel Genome In a Bottle\ subGroup1 view Views trios=Trios sv=Structural_Variants\ track giab\ type bed 3\ visibility hide\ triosView Genome In a Bottle Trios vcfPhasedTrio Genome in a Bottle Ashkenazim and Chinese Trios 0 100 0 0 0 127 127 127 0 0 0 varRep 0 longLabel Genome in a Bottle Ashkenazim and Chinese Trios\ parent giab\ shortLabel Genome In a Bottle Trios\ track triosView\ type vcfPhasedTrio\ view trios\ visibility hide\ wgEncodeAwgSegmentation Genome Segments bed 9 . Genome Segmentations from ENCODE 0 100 0 0 0 127 127 127 0 0 0

Overview

\

\ This set of tracks represents multivariate genome-segmentation results based on ENCODE data \ (ENCODE Project Consortium, 2012). \ Using two different unsupervised machine learning techniques (ChromHMM and Segway), the genome\ was automatically segmented into disjoint segments. \ Each segment belongs to one of a few specific genomic "states" which is assigned an intuitive label.\ Each genomic state represents a particular combination and distribution of different ENCODE\ functional data tracks such as histone modifications, open chromatin data and specific TF\ binding data. \ A consensus unified segmentation was also generated by reconciling results from the \ individual segmentations. \ The specific descriptions for each segmentation are listed below.

\

\ These segmentations were performed on\ six human cell types\ (GM12878, K562, H1-hESC, HeLa-S3, HepG2, and HUVEC), integrating ChIP-seq data for \ \ 8 chromatin marks, RNA Polymerase II, the CTCF transcription factor, and input data.\ In total, twenty-five states were used to segment the genome, and these states were then \ grouped and colored to highlight predicted functional elements.\

\ \

Display Conventions and Configuration

\

\ The number and type of Segmentation states from the individual segmentations differ, \ but are unified via grouping by color (10 groups for ChromHMM and Segway, 7 for the Combined).\ The display can be filtered to selected groups using the 'Filter by Segment Type' control on the\ track configuration page. Groupings that are not represented in the Combined tracks are marked\ in the menu with an asterisk.

\ \
\

Combined Segmentations

\ \

Description

\ \

These tracks display chromatin state segmentations from 6 cell lines, using a consensus \ merge of the segmentations produced by the ChromHMM and Segway software. \ In both segmentations, twenty-five states were used to segment the genome, however\ for ease of comprehension and display, the merged segmentation uses only seven states.\ \

Display Conventions and Configuration

\

\ The seven states of the combined segmentation, the candidate annotations and associated segment colors are as follows:

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
TSS Bright Red Predicted promoter region including TSS
PF Light Red Predicted promoter flanking region
E Orange Predicted enhancer
WE Yellow Predicted weak enhancer or open chromatin cis regulatory element
CTCFBlue CTCF enriched element
T Dark Green Predicted transcribed region
R Gray Predicted Repressed or Low Activity region
\ \

Methods

\

ChIP-seq data from the ENCODE Consortium was used to generate this track, and the ChromHMM \ and Segway programs were used to perform the segmentation. \ Methods for the ChromHMM and Segway segmentations are described below.

\

\ To form the combined segmentation, for each original segmentation, states that could be grouped\ together based on similar signal patterns were identified.\ For the ChromHMM segmentation, the states were grouped manually based on the mean signal values \ across multiple cell lines. \ For the Segway segmentations run independently over multiple cell lines, multiple hierarchical \ clustering techniques were applied across all states in the segmentations to identify the most \ consistent clustering of states, both across cell lines and with respect to existing \ biological knowledge. \ Using these criteria, the Ward clustering on euclidean distances between mean signal scores \ transformed to the unit interval was chosen to cluster the Segway state labels. \ Subsequently, pairwise relationships between the ChromHMM and Segway merged states were \ identified using both overlap calculations and manual annotation (Hoffman, Ernst et al. 2013). \ Pairs of states that were viewed as concordant were assigned to one of the seven state classes. \ Regions of the genome occupied by concordant states between the two initial segmentations were \ reassigned to the new summary labels. \ In some cases there were combinations of states between the two segmentations that could not \ be reconciled and these combinations were viewed as discordant. \ Regions with discordant states were not assigned a state label, and were dropped from\ the summary combined segmentation.

\
\ \

ChromHMM Segmentations

\ \

Description

\

\ A common set of states across 6 human cell types were learned by computationally integrating ENCODE\ ChIP-seq, DNase-seq, and FAIRE-seq data using a Hidden Markov Model (HMM).\ Twenty-five states were used to segment the genome, and these states were then \ grouped and colored to highlight predicted functional elements.\ There are 6 ChromHMM tracks. Each track represents the segmentation results for each of the \ six cell lines.

\

\ A related ChromHMM browser track, \ \ Chromatin State Segmentation by HMM from ENCODE/Broad (Broad ChromHMM)\ (Ernst et. al. 2011) reports segmentations for 9 cell types and is based solely on histone data.\ \

Display Conventions and Configuration

\

\ The candidate annotations and associated segment colors are as follows:

\ \ \ \ \ \ \ \ \ \ \ \
Tss, TssFBright RedActive Promoter
PromFLight RedPromoter Flanking
PromPPurpleInactive Promoter
Enh, EnhFOrangeCandidate Strong enhancer
EnhWF, EnhW, DNaseU, DNaseD, FaireWYellowCandidate Weak enhancer/DNase
CtrcfO, CtcfBlueDistal CTCF/Candidate Insulator
Gen5', Elon, ElonW, Gen3', Pol2, H4K20Dark GreenTranscription associated
LowLight Green Low activity proximal to active states
ReprD, Repr, ReprWGrayPolycomb repressed
Quies, ArtLight GrayHeterochromatin/Repetitive/Copy Number Variation
\ \

Methods

\

\ Data from the ENCODE Consortium was used to generate this track, and the ChromHMM \ program was used to perform the segmentation. \ Datasets for 10 factors plus input in 6 cell types were binarized separately at a 200 base pair \ resolution using a Poisson background model and fold enrichment cut-offs. \ The chromatin states were learned from this binarized data using a multivariate Hidden Markov \ Model (HMM) that explicitly models the combinatorial patterns of observed modifications \ (Ernst and Kellis, 2010).\ To learn a common set of states across the six cell types, first the genomes were concatenated\ across the cell types. For each of the six cell types, each 200 base pair interval was then \ assigned to its most likely state under the model.

\
\ \

Segway Segmentations

\ \

Description

\

\ Sets of states across 6 human cell types were learned by computationally integrating\ ENCODE ChIP-seq, DNAse-seq and FAIRE-seq data using a Dynamic Bayesian Network (DBN). \ Twenty-five states were used to segment the genome (listed below in the Display Conventions\ and Configuration section by their prefixes - such as PromP for PromP1, PromP2, etc.),\ and these states were then grouped and colored to highlight predicted functional elements\ (such as the color purple for an inactive promoter region). There are 6 Segway tracks, each\ representing the segmentation results for a separate cell line. Not every\ segmentation state is found in each cell line. If you have further questions about the\ tracks, please contact the authors listed under the Credits section. \

\ \

Display Conventions and Configuration

\

\ The segment state prefixes, associated colors, and candidate annotations are:

\ \ \ \ \ \ \ \ \ \ \ \
Tss, DnaseDBright RedActive Promoter
TssF, PromFLight RedPromoter Flanking
PromPPurpleInactive Promoter
Enh, EnhF, EnhPr, EnhPOrangeCandidate Strong enhancer
EnhW, EnhWfYellowCandidate Weak enhancer
Ctcf, CtcfOBlueDistal CTCF/Candidate Insulator
Gen3', Gen5', Elon, ElonWDark GreenTranscription associated
LowLight GreenLow activity proximal to active states
ReprGrayPolycomb repressed
QuiescLight GrayHeterochromatin/Repetitive/Copy Number Variation
\ \

Methods

\

\ Data from the ENCODE Consortium was used to generate this track, and the Segway program \ was used to perform the segmentation. \ Data for 10 factors plus input in 6 cell types\ was converted to real valued signal data using the Wiggler program. \ Using the ENCODE regions (spanning 1% of the human genome) the chromatin states were \ learned from this data using a Dynamic Bayesian Network (DBN) (Hoffman, et al. 2012). \ Models were learned separately for each of the six cell types. For each cell type, \ the Viterbi algorithm was used to assign genomic regions to individual state labels at \ single base pair resolution over the entire genome.

\ \
\ \

Credits

\

\ The ChromHMM segmentation was produced at the \ \ MIT Computational Biology Group (Kellis lab) by\ \ \ Jason Ernst now at \ UCLA.

\

\ The Segway segmentation was produced at the \ \ Noble Research Lab by\ \ \ Michael Hoffman, now at the \ \ Princess Margaret Cancer Center, Toronto.\

\ The Combined segmentation was produced at the European Bioinformatics Institute (EMBL-EBI,\ Flicek team), by\ \ \ Steven Wilder and Ian Dunham,\ as part of the work of the ENCODE Data Analysis Center (Ewan Birney).

\

References

\

\ ENCODE Project Consortium.\ \ An integrated encyclopedia of DNA elements in the human genome.\ Nature. 2012 Sep 6;489(7414):57-74.\ PMID: 22955616; PMC: PMC3439153\

\ \

\ Ernst J, Kellis M.\ \ ChromHMM: automating chromatin-state discovery and characterization.\ Nat Methods. 2012 Feb 28;9(3):215-6.\ PMID: 22373907; PMC: PMC3577932\

\

\ \

\ Ernst J, Kellis M.\ \ Discovery and characterization of chromatin states for systematic annotation of the human\ genome.\ Nat Biotechnol. 2010 Aug;28(8):817-25.\ PMID: 20657582; PMC: PMC2919626\

\ \

\ Hoffman MM, Buske OJ, Wang J, Weng Z, Bilmes JA, Noble WS.\ \ Unsupervised pattern discovery in human chromatin structure through genomic segmentation.\ Nat Methods. 2012 Mar 18;9(5):473-6.\ PMID: 22426492; PMC: PMC3340533\

\ \

\ Hoffman MM, Ernst J, Wilder SP, Kundaje A, Harris RS, Libbrecht M, Giardine B, Ellenbogen PM, Bilmes\ JA, Birney E et al.\ \ Integrative annotation of chromatin elements from ENCODE data.\ Nucleic Acids Res. 2013 Jan;41(2):827-41.\ PMID: 23221638; PMC: PMC3553955\

\ \

Data Release Policy

\

\ The data used to generate these segmentations are covered by the ENCODE data release policy\ here, and\ so were subject to some usage restrictions for a 9 month period.\ There are no restrictions on the use of the ENCODE segmentation data.\

\ regulation 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell\ dataVersion ENCODE Jan 2011 Freeze\ dimensions dimX=method dimY=cellType\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line fileSize=Size fileType=File_Type\ filterBy reserved:Segment_Type=16711680|Strong_Promoter{color:#FF0000},16738665|Promoter_Flanking{color:#FF6969},13568966|Inactive_Promoter_*{color:#CF0BC6},16435712|Strong_Enhancer{color:#FACA00},16776196|Weak_Enhancer{color:#FFFC04},704254|Insulator{color:#0ABEFE},45136|Transcribed{color:#00B050},10092390|Low_Activity_*{color:#99FF66},8355711|Repressed{color:#7F7F7F},14803425|Repetitive_*{color:#E1E1E1}\ group regulation\ itemRgb on\ longLabel Genome Segmentations from ENCODE\ noScoreFilter .\ priority 0\ shortLabel Genome Segments\ sortOrder tier=+ cellType=+ method=+\ subGroup1 tier Tier t1=1 t2=2\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2)\ subGroup3 method Method ChromHMM=ChromHMM Segway=Segway Combined=Combined\ track wgEncodeAwgSegmentation\ type bed 9 .\ visibility hide\ pgSnp Genome Variants pgSnp Personal Genome Variants 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This track displays variant base calls from the publicly released genome\ sequences of several individuals:\

    \
  • 5 Sub-Saharan African genomes sequenced by Penn State University:
    • \
      \
    • !Gubi (KB1)
      • \
    • G/aq'o (NB1)
      • \
    • !Ai (MD8)
      • \
    • D#kgao (TK1)
      • \
    • Archbishop Desmond Tutu (ABTutu)
      • \
    \
  • 6 individuals from the 1000 Genomes Project:
    • \
      \
    • a CEU daughter and parents (NA12878, NA12891, NA12892)
      • \
    • a YRI daughter and parents (NA19240, NA19238, NA19239)
      • \
    \
  • 69 non-diseased individuals sequenced by Complete Genomics:
    • \
      \
    • a YRI daughter and parents (NA19240, NA19238, NA19239)
      • \
    • a PUR trio (HG00731, HG00732, HG00733)
      • \
    • a 17-member, 3-generation CEPH pedigree\ (Pedigree 1463: NA12877, NA12878, NA12879, NA12880, NA12881, NA12882, NA12883, NA12884,\ \ NA12885, NA12886, NA12887, NA12888, NA12889, NA12890, NA12891, NA12892, NA12893)
      • \
    • a diversity panel representing unrelated individuals from ten different populations:\
        \ \
      • ASW (NA19700, NA19701, NA19703, NA19704, NA19834)
        • \ \
      • CEU (NA06985, NA06994, NA07357, NA10851, NA12004)
        • \ \
      • CHB (NA18526, NA18537, NA18555, NA18558)
        • \ \
      • GIH (NA20845, NA20846, NA20847, NA20850)
        • \ \
      • JPT (NA18940, NA18942, NA18947, NA18956)
        • \ \
      • LWK (NA19017, NA19020, NA19025, NA19026)
        • \ \
      • MKK (NA21732, NA21733, NA21737, NA21767)
        • \ \
      • MXL (NA19735, NA19648, NA19649, NA19669, NA19670)
        • \ \
      • TSI (NA20502, NA20509, NA20510, NA20511)
        • \ \
      • YRI (NA18501, NA18502, NA18504, NA18505, NA18508, NA18517, NA19129)
        • \
      \
      • \
    \
  • 5 individuals from the Personal Genome Project:
    • \
      \
    • George Church (NA20431)
      • \
    • Misha Angrist (NA21677)
      • \
    • Rosalynn Gill (NA21833)
      • \
    • Henry Louis Gates Sr.
      • \
    • Henry Louis Gates Jr.
      • \
    \
  • and independently published genomes:
    • \
      \
    • Craig Venter
      • \
    • James Watson
      • \
    • Anonymous Yoruba individual NA18507
      • \
    • Anonymous Han Chinese individual (YH, YanHuang Project)
      • \
    • Seong-Jim Kim (SJK)
      • \
    • Anonymous Korean individual (AK1)
      • \
    • Stephen Quake
      • \
    • Anonymous Irish male
      • \
    • Marjolein Kriek
      • \
    • Gregory Lucier
      • \
    • Extinct Palaeo-Eskimo Saqqaq individual
      • \
    \
\ Note: The Khoisan languages are characterized by clicks, denoting\ additional consonants. The ! is a palatal click, / is a dental click,\ and # is an alveolar click (Le Roux and White, 2004).\

\ \

Display Conventions and Configuration

\

\ In the genome browser, when viewing the forward strand of the\ reference genome (the normal case), the displayed alleles are relative\ to the forward strand. When viewing the reverse strand of the\ reference genome ("reverse" button), the displayed alleles\ are reverse-complemented to match the reverse strand. \ When read frequency data are available, they are displayed in the mouseover \ text (e.g., "T:8 G:3" means that 8 reads contained a T and 3 reads contained \ a G at that base position) and box colors are used to show the proportion of \ alleles.

\

\ On the details page for each variant, the alleles are given for the\ forward strand of the reference genome. Frequency data are shown when\ available.\

\ \

Methods

\

\ Variants from Complete Genomics and Marjolein Kriek were mapped to the\ Feb. 2009 (GRCh37/hg19) human genome assembly, so they required no remapping.\ Variants for all other individuals were originally mapped to the Mar. 2006\ (NCBI36/hg18) human genome assembly. Their locations were translated into GRCh37/hg19\ coordinates using the liftOver program and the mapping file\ hg18ToHg19.over.chain.gz. Homozygous matches to the \ GRCh37/hg19 reference were removed.

\ \

Sources

\

\ KB1, NB1, MD8, TK1, ABTutu\ (Penn State)\ (Schuster et al.)
\ SNPs are from the allSNPs.txt file which can be downloaded\ from Galaxy. The indels are also\ available for download from Galaxy.\

\ \

\ CEU trio NA12878, NA12891, NA12892; YRI trio NA19240, NA19238, NA19239\ (1000 Genomes Project, March 2010 release)\ (1000 Genomes)
\ The variants shown are from the 1000 Genomes Project's March 2010\ release.\ The CEU variant calls were based on sequence data from the\ Wellcome Trust Sanger Insititute and the\ Broad Institute, using the Illumina/Solexa platform.\ The YRI variant calls were based on sequence data from the\ Baylor College of Medicine\ Human Genome Sequencing Center and\ Applied Biosystems, using the SOLiD platform.\ For more information on the mapping, variant calling, filtering and\ validation, see the\ pilot 2 README file.\ The variant calls are available from the March 2010 release subdirectory at\ EBI and at\ NCBI.\

\ \

Complete Genomics 69 genomes\ (Complete Genomics, Nov 2011 release)\ (CG)
\ There are four sets of data: a Yoruba trio; a Puerto Rican trio; a\ 17-member, 3-generation pedigree; and a diversity panel representing ten\ different populations. The CEPH samples within the pedigree and\ diversity sets are from the NIGMS Repository and the remainder from\ the NHGRI Repository, both housed at the Coriell Institute for Medical\ Research. The downloaded dataset was generated by the Complete Genomics\ Analysis Pipeline version 2.0.0.\

\ \

George Church\ (Personal Genome Project, Complete Genomics)\ (CG)
\ The variants are from Complete Genomics (Complete Genomics Analysis Pipeline\ version 1.2.0.14).\

\ \

Misha Angrist, Rosalynn Gill, Henry Louis Gates Sr., Henry Louis Gates Jr.\ (Personal Genome Project)\ (PGP)
\ The variants were downloaded from a\ \ Trait-o-matic installation that may be out of order.\ The numbers for Angrist are read counts; the number supporting each allele\ was not given.\ The Personal Genome Project offers whole genome sequences for the original\ individuals and many more\ for download.\

\ \

\ Craig Venter (JCVI)\ (Levy et al.)
\ An overview is given\ here.\ This subtrack contains Venter's single-base variants from the file\ HuRef.InternalHuRef-NCBI.gff,\ filtered to include only Method 1 variants (where each variant was\ kept in its original form and not post-processed), and to exclude any\ variants that had N as an allele.\ JCVI hosts a\ genome browser.\

\

\ James Watson\ (CSHL)\ (Wheeler et al.)
\ These single-base variants came from the file\ watson_snp.gff.gz.\ CSHL hosts a\ genome browser.\

\

\ Yoruba NA18507\ (Illumina Cambridge/Solexa)\ (Bentley et al.)
\ Illumina released the read sequences to the\ NCBI Short Read Archive.\ Aakrosh Ratan in the Miller Lab at Penn State University (PSU)\ mapped the sequence reads to the reference genome and called\ single-base variants using\ MAQ.\

\

\ YH (YanHuang Project)\ (Wang et al.)
\ The YanHuang Project released these single-base variants from the\ genome of a Han Chinese individual.\ The data are available from the\ YH database in the file\ yhsnp_add.gff.\ The YanHuang Project hosts a\ genome browser.\

\

\ SJK (GUMS/KOBIC)\ (Ahn et al.)
\ Researchers at Gachon University of Medicine and Science (GUMS)\ and the Korean Bioinformation Center (KOBIC)\ released these single-base variants from the genome of Seong-Jin Kim.\ The data are available from\ KOBIC\ in the file\ KOREF-solexa-snp-X30_Q40d4D100.gff.\

\

AK1\ (Genomic Medicine Institute)\ (Kim et al.)
\ The variants shown are from the\ AK1_SNP.tar.gz download.\

\

Stephen Quake (Stanford)\ (Pushkarev et al.)
\ The variants were downloaded from a\ \ Trait-o-matic installation that may be out of order.\

\

Anonymous Irish male\ (Tong et al.)
\ The SNPs shown are from the Galaxy library,\ Irish whole genome.\

\

\ Marjolein Kriek\ (Leiden)
\ The SNPs shown are called by Belinda Giardine from PSU, from the BAM file\ provided by\ Leiden University Medical Center. The reads were aligned to the\ GRCh37/hg19 build. SNP calls were made using samtools, with a minimum of 4 reads\ supporting the variant call and a maximum of 45. Those with a quality\ score of less than 30 were filtered out.\

\

Gregory Lucier\ (Life Technologies)
\ The SNPs shown are from\ Nimbus Informatics.\ Sequencing was done using the Life Technologies SOLiD platform.\

\

Palaeo-Eskimo Saqqaq individual (Saqqaq Genome Project)\ (Rasmussen et al.)
\ The variants shown are\ all non-reference SNPs found by the SNPest program, and in\ a second track the\ high confidence SNPs from the first set.\ The allele counts are not available for these tracks but read depth is\ available. The read depth was put in place of the allele counts to\ give a measure of the reliability of the call.\

\ \

Credits

\

\ Variants shown in this track were determined by the many individuals\ and institutions listed above.\ Thanks to Belinda Giardine at PSU for collecting the data and\ loading them into the UCSC database.\

\ \

References

\ \

\ Le Roux W, White A.\ The voices of the San living in Southern Africa today. Cape Town: Kwela Books; 2004.\

\ \

\ KB1, NB1, MD8, TK1, ABTutu (Penn State)
\ Schuster SC, Miller W, Ratan A, Tomsho LP, Giardine B, Kasson LR, Harris RS, Petersen DC, Zhao F, Qi\ J et al.\ \ Complete Khoisan and Bantu genomes from southern Africa.\ Nature. 2010 Feb 18;463(7283):943-7.\ PMID: 20164927; PMC: PMC3890430\

\ \

\ CEU trio NA12878, NA12891, NA12892;\ YRI trio NA19240, NA19238, NA19239 (1000 Genomes)
\ 1000 Genomes Project Consortium, Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA,\ Hurles ME, McVean GA.\ \ A map of human genome variation from population-scale sequencing.\ Nature. 2010 Oct 28;467(7319):1061-73.\ PMID: 20981092; PMC: PMC3042601\

\ \

\ Complete Genomics 69 genomes
\ Drmanac R, Sparks AB, Callow MJ, Halpern AL, Burns NL, Kermani BG, Carnevali P, Nazarenko I, Nilsen\ GB, Yeung G et al.\ \ Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays.\ Science. 2010 Jan 1;327(5961):78-81.\ PMID: 19892942\

\

\ Public Genome Data Repository Service Note,\ Complete Genomics 2011.\

\ \

\ George Church
\ Drmanac R, Sparks AB, Callow MJ, Halpern AL, Burns NL, Kermani BG, Carnevali P, Nazarenko I, Nilsen\ GB, Yeung G et al.\ \ Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays.\ Science. 2010 Jan 1;327(5961):78-81.\ PMID: 19892942\

\ \

\ Misha Angrist, Rosalynn Gill, Henry Louis Gates Sr., Henry Louis Gates Jr.
\ Church GM.\ \ The personal genome project.\ Mol Syst Biol. 2005;1:2005.0030.\ PMID: 16729065; PMC: PMC1681452\

\ \

\ Craig Venter (JCVI)
\ Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G\ et al.\ \ The diploid genome sequence of an individual human.\ PLoS Biol. 2007 Sep 4;5(10):e254.\ PMID: 17803354; PMC: PMC1964779\

\ \

\ James Watson (CSHL)
\ Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen YJ, Makhijani V, Roth GT\ et al.\ \ The complete genome of an individual by massively parallel DNA sequencing.\ Nature. 2008 Apr 17;452(7189):872-6.\ PMID: 18421352\

\ \

\ Yoruba NA18507 (Illumina Cambridge/Solexa)
\ Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, Brown CG, Hall KP, Evers DJ, Barnes\ CL, Bignell HR et al.\ \ Accurate whole human genome sequencing using reversible terminator chemistry.\ Nature. 2008 Nov 6;456(7218):53-9.\ PMID: 18987734; PMC: PMC2581791\

\ \

\ YH (YanHuang Project)
\ Wang J, Wang W, Li R, Li Y, Tian G, Goodman L, Fan W, Zhang J, Li J, Zhang J et al.\ \ The diploid genome sequence of an Asian individual.\ Nature. 2008 Nov 6;456(7218):60-5.\ PMID: 18987735; PMC: PMC2716080\

\ \

\ SJK (GUMS/KOBIC)
\ Ahn SM, Kim TH, Lee S, Kim D, Ghang H, Kim DS, Kim BC, Kim SY, Kim WY, Kim C et al.\ \ The first Korean genome sequence and analysis: full genome sequencing for a socio-ethnic group.\ Genome Res. 2009 Sep;19(9):1622-9.\ PMID: 19470904; PMC: PMC2752128\

\ \

\ AK1 (Genomic Medicine Institute)
\ Kim JI, Ju YS, Park H, Kim S, Lee S, Yi JH, Mudge J, Miller NA, Hong D, Bell CJ et al.\ \ A highly annotated whole-genome sequence of a Korean individual.\ Nature. 2009 Aug 20;460(7258):1011-5.\ PMID: 19587683; PMC: PMC2860965\

\ \

\ Stephen Quake
\ Pushkarev D, Neff NF, Quake SR.\ \ Single-molecule sequencing of an individual human genome.\ Nat Biotechnol. 2009 Sep;27(9):847-50.\ PMID: 19668243; PMC: PMC4117198\

\ \

\ Anonymous Irish male
\ Tong P, Prendergast JG, Lohan AJ, Farrington SM, Cronin S, Friel N, Bradley DG, Hardiman O, Evans A,\ Wilson JF et al.\ \ Sequencing and analysis of an Irish human genome.\ Genome Biol. 2010;11(9):R91.\ PMID: 20822512; PMC: PMC2965383\

\ \

\ Marjolein Kriek
\ Not published yet, data provided by\ Leiden University Medical Center.\

\ \

\ Gregory Lucier
\ Not published, data provided by Life Technologies and Nimbus Informatics.\

\ \

\ Palaeo-Eskimo Saqqaq individual
\ Rasmussen M, Li Y, Lindgreen S, Pedersen JS, Albrechtsen A, Moltke I, Metspalu M, Metspalu E,\ Kivisild T, Gupta R et al.\ \ Ancient human genome sequence of an extinct Palaeo-Eskimo.\ Nature. 2010 Feb 11;463(7282):757-62.\ PMID: 20148029; PMC: PMC3951495\

\ varRep 1 compositeTrack on\ configurable on\ dimensions dimX=view dimY=type\ dragAndDrop subTracks\ group varRep\ longLabel Personal Genome Variants\ maxItems 50\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel Genome Variants\ sortOrder view=+ id=+ type=-\ subGroup1 view Projects A_PSU=PSU_Bushmen B_1kG=1000_Genomes_March_2010 C_CG=Complete_Genomics D_PGP=Personal_Genomes_Project N_1off=Single-Genome_Projects\ subGroup2 type Variant_type SNP=SNP Indel=Indel\ subGroup3 id Genome AA_KB1=KB1 AB_NB1=NB1 AC_MD8=MD8 AD_TK1=TK1 AE_ABTutu=ABTutu BF_12878=NA12878 BG_12891=NA12891 BH_12892=NA12892 BI_19240=NA19240 BJ_19238=NA19238 BK_19239=NA19239 CA_PUR_731=HG00731 CB_PUR_732=HG00732 CC_PUR_733=HG00733 NL_Venter=Venter NM_Watson=Watson NN_18507=NA18507 NO_YH=YH NP_SJK=SJK NQ_AK1=AK1 NR_Quake=Quake NRS_Irish=Irish NS_Saqqaq=Saqqaq CA_div_GS19704=NA19704 CI_div_GS20511=NA20511 CK_div_GS18502=NA18502 CD_div_GS20847=NA20847 CG_div_GS19669=NA19669 CG_div_GS19735=NA19735 CC_div_GS18558=NA18558 CE_div_GS18942=NA18942 CH_div_GS21737=NA21737 CPed_GS12877=NA12877 CG_div_GS19649=NA19649 CC_div_GS18537=NA18537 CH_div_GS21732=NA21732 CA_div_GS19701=NA19701 CH_div_GS21767=NA21767 CC_div_GS18555=NA18555 CI_div_GS20510=NA20510 CPed_GS12885=NA12885 CA_div_GS19834=NA19834 CPed_GS12890=NA12890 CC_div_GS18526=NA18526 CPed_GS12883=NA12883 CG_div_GS19670=NA19670 CE_div_GS18956=NA18956 CF_div_GS19017=NA19017 CK_div_GS18501=NA18501 CI_div_GS20502=NA20502 CPed_GS12886=NA12886 CB_div_GS06985=NA06985 CK_div_GS18508=NA18508 CK_div_GS18505=NA18505 CB_div_GS10851=NA10851 CA_div_GS19700=NA19700 CB_div_GS12004=NA12004 CB_div_GS07357=NA07357 CD_div_GS20846=NA20846 CPed_GS12887=NA12887 CB_div_GS06994=NA06994 CD_div_GS20845=NA20845 CPed_GS12884=NA12884 CPed_GS12888=NA12888 CPed_GS12879=NA12879 CPed_GS12882=NA12882 CD_div_GS20850=NA20850 CI_div_GS20509=NA20509 CPed_GS12880=NA12880 CPed_GS12889=NA12889 CF_div_GS19020=NA19020 CA_div_GS19703=NA19703 CF_div_GS19025=NA19025 CPed_GS12881=NA12881 CE_div_GS18940=NA18940 CG_div_GS19648=NA19648 CE_div_GS18947=NA18947 CF_div_GS19026=NA19026 CK_div_GS19129=NA19129 CK_div_GS18517=NA18517 CH_div_GS21733=NA21733 CK_div_GS18504=NA18504 CPed_GS12893=NA12893 D_Church=Church D_Gill=Gill D_Angrist=Angrist D_GatesJr=Gates_Jr D_GatesSr=Gates_Sr NR_Kriek=Kriek NR_Lucier=Lucier\ track pgSnp\ type pgSnp\ visibility hide\ genscan Genscan Genes genePred genscanPep Genscan Gene Predictions 0 100 170 100 0 212 177 127 0 0 0

Description

\ \

\ This track shows predictions from the\ Genscan program\ written by Chris Burge.\ The predictions are based on transcriptional, translational and donor/acceptor\ splicing signals as well as the length and compositional distributions of exons,\ introns and intergenic regions.\

\ \

\ For more information on the different gene tracks, see our Genes FAQ.

\ \

Display Conventions and Configuration

\ \

\ This track follows the display conventions for\ gene prediction\ tracks.\

\ \

\ The track description page offers the following filter and configuration\ options:\

    \
  • Color track by codons: Select the genomic codons option\ to color and label each codon in a zoomed-in display to facilitate validation\ and comparison of gene predictions. Go to the\ \ Coloring Gene Predictions and Annotations by Codon page for more\ information about this feature.
    • \
\

\ \

Methods

\ \

\ For a description of the Genscan program and the model that underlies it,\ refer to Burge and Karlin (1997) in the References section below.\ The splice site models used are described in more detail in Burge (1998)\ below.\

\ \

Credits

\ \ Thanks to Chris Burge for providing the Genscan program.\ \

References

\ \

\ Burge C.\ Modeling Dependencies in Pre-mRNA Splicing Signals.\ In: Salzberg S, Searls D, Kasif S, editors.\ Computational Methods in Molecular Biology.\ Amsterdam: Elsevier Science; 1998. p. 127-163.\

\ \

\ Burge C, Karlin S.\ \ Prediction of complete gene structures in human genomic DNA.\ J. Mol. Biol. 1997 Apr 25;268(1):78-94.\ PMID: 9149143\

\ genes 1 color 170,100,0\ group genes\ html ../../genscan\ longLabel Genscan Gene Predictions\ parent genePredArchive\ shortLabel Genscan Genes\ track genscan\ type genePred genscanPep\ visibility hide\ wgEncodeGisChiaPet GIS ChIA-PET bed 12 Chromatin Interaction Analysis Paired-End Tags (ChIA-PET) from ENCODE/GIS-Ruan 1 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ This track was produced as part of the ENCODE Project. \ It shows the locations of protein factor\ mediated chromatin interactions determined by \ Chromatin Interaction Analysis with Paired-End Tag (ChIA-PET) data\ (Fullwood et al., 2010)\ extracted from five different human cancer cell lines \ (K562 (chronic myeloid leukemia), HCT116 (colorectal cancer),\ HeLa-S3 (cervical cancer), MCF-7 (breast cancer), and NB4\ (promyelocytic)). A chromatin interaction is\ defined as the association of two regions of the genome that are \ far apart in terms of genomic distance, but are\ spatially proximate to each other in \ the 3-dimensional cellular nucleus.\

\ Additionally, ChIA-PET experiments generate \ transcription factor binding sites. A binding site\ is defined as a region of the genome \ that is highly enriched by specific Chromatin\ ImmunoPrecipitation (ChIP) against a transcription \ factor, which indicates that the transcription\ factor binds specifically to this region. \ The protein factors displayed in the track\ include estrogen receptor alpha (ERα), RNA polymerase II (RNAPII),\ and CCCTC binding factor (CTCF).\ \

Display Conventions and Configuration

\ \

\ In the graphical display, the PETs are \ represented by two blocks one for each end. \ These blocks are connected by a horizontal\ line if both ends are in the same chromosome. \ If the two ends are on different chromosomes, only\ one block will display.\ PET sequences that overlap at both ends form \ PET clusters. The number of PETs in a cluster reflects\ the strength of a chromatin interaction. \ Singleton PETs (PETs without a cluster) are\ potentially false positives, whereas PET clusters of \ more than 3 PETs could indicate genuine\ chromatin interactions. The density graph of the \ tags shows the ChIP enrichment at different points\ of genome, and high peaks indicate transcription\ factor binding sites.\

\ Instructions for configuring multi-view tracks are \ here.\ \

To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ \
\
Interactions\
ChIA-PET Chromatin Interaction PET clusters: \ Two different genomic regions in the chromatin are \ genomically far from each other or in different \ chromosomes, but are spatially close to each \ other in the nucleus and interact with each \ other for regulatory functions. \ BED12 format is used to represent the data. \
Signal\
Density graph (wiggle) of signal enrichment based on aligned read density.\
\

Metadata for a particular subtrack can be found \ by clicking the down arrow in the list of subtracks.

\ \

Methods

\ \

\ Chromatin interaction analysis with paired-end tag \ sequencing (ChIA-PET) is a global de novo\ high-throughput method for characterizing the 3-dimensional\ structure of chromatin in the nucleus. In the \ ChIA-PET protocol, samples were cross-linked and\ fragmented, then subjected to chromatin immunoprecipitation. \ The DNA fragments that were brought together \ by the chromatin interactions were then \ proximity-ligated. During this proximity-ligation \ step, the half-linkers (created by the \ fragmentation) containing flanking \ MmeI sites (type IIS restriction enzymes) were\ first ligated to the DNA fragments and then\ ligated to each other to form full\ linkers. Full linkers bridge either two ends of a \ self-circularized fragment, or two ends of two\ different chromatin fragments. The material was \ then reverse cross-linked, purified and digested\ with MmeI. MmeI cuts 20 base pairs away from its \ recognition site. Tag-linker-tag (paired-end\ tag, PET) constructs were sequenced by ultra-high-throughput\ methods (Illumina or SOLiD paired-end sequencing). \ ChIA-PET reads were processed with\ the ChIA-PET Tool (Li et al., 2010)\ by the following steps: linker filtering, \ short reads mapping, PET classification, binding site \ identification, and interaction cluster identification. \ The high-confidence binding sites and \ chromatin interaction clusters were reported.\ \

Verification

\ \

\ Chromatin interactions identified by ChIA-PET have been \ validated by 3C, ChIP-3C, 4C and DNA-FISH (Fullwood et al., 2009).\ \

Credits

\ \

\ Genome Institute of Singapore: Guoliang Li, Xiaoan Ruan, Kuljeet Singh Sandhu, Fabianus Hendriyan Mulawadi, Huay Mei Poh, Yufen Goh, Su Qin Peh, Wing-Kin Sung, Yijun Ruan\

\

\ Stanford University: Raymond Auerbach, Michael Snyder

\ \ Contact:\ \ Yijun Ruan\ \ \

References

\ \

\ Fullwood MJ, Han Y, Wei CL, Ruan X, Ruan Y.\ \ Chromatin interaction analysis using paired-end tag sequencing.\ Curr Protoc Mol Biol. 2010 Jan;Chapter 21:Unit 21.15.1-25.\

\

\ Fullwood MJ, Liu MH, Pan YF, Liu J, Xu H, Mohamed YB, Orlov YL, Velkov S, Ho A, Mei PH et al.\ \ An oestrogen-receptor-alpha-bound human chromatin interactome.\ Nature. 2009 Nov 5;462(7269):58-64.\

\

\ Li G, Fullwood MJ, Xu H, Mulawadi FH, Velkov S, Vega V, Ariyaratne PN, Mohamed YB, Ooi HS, Tennakoon C et al.\ \ ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing.\ Genome Biol. 2010;11(2):R22.\

\ \

Publications

\ \

\ Li G, Ruan X, Auerbach RK, Sandhu KS, Zheng M, Wang P, Poh HM, Goh Y, Lim J, Zhang J et al.\ \ Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation.\ Cell. 2012 Jan 20;148(1-2):84-98.\

\ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

\ regulation 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell factor=antibody\ dimensionZchecked rep1\ dimensions dimensionX=cellType dimensionY=factor dimensionZ=rep\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line antibody=Factor replicate=Replicate view=View labExpId=Lab_ID dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ filterComposite dimensionZ=multi\ group regulation\ longLabel Chromatin Interaction Analysis Paired-End Tags (ChIA-PET) from ENCODE/GIS-Ruan\ noInherit on\ priority 0\ shortLabel GIS ChIA-PET\ sortOrder cellType=+ factor=+ rep=+\ subGroup1 view Views Interactions=Interactions Signal=Signal\ subGroup2 cellType Cell_Line t1K562=K562 (Tier_1) t2HELAS3=HeLa-S3 (Tier_2) t2MCF7=MCF-7 (Tier_2) t3HCT116=HCT-116 t3NB4=NB4\ subGroup3 factor Factor ERAA=ERalpha_a CTCF=CTCF POL2=Pol2\ subGroup4 rep Replicate rep1=1 rep2=2 rep3=3 rep4=4 Pooled=Pooled\ superTrack wgEncodeChromSuper dense\ track wgEncodeGisChiaPet\ type bed 12\ wgEncode on\ wgEncodeGisDnaPet GIS DNA PET bam ENCODE Genome Institute of Singapore DNA Paired-End Ditags 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

This track is produced as part of the ENCODE Transcriptome Project. \ It shows the starts and ends of DNA fragments from different \ cell\ lines\ determined by paired-end ditag (PET) sequencing using different\ DNA\ fragment sizes \ for analysis of genome structural variation. \

\ \

Display Conventions and Configuration

\ \

In the graphical display, the ends are represented by blocks connected by a \ horizontal line. In full and packed display modes, the arrowheads on the \ horizontal line represent the strand, and an ID of the \ format XXXXX-N-M is shown to the left of each PET, where X \ is the unique ID for each PET, N indicates the number of mapping \ locations in the genome (1 for a single mapping location, 2 for two mapping \ locations, and so forth), and M is the number of PET sequences at \ this location. PETs that mapped to multiple locations may represent low \ complexity or repetitive sequences.\

\ \

To show only selected subtracks, uncheck the boxes next to the tracks that \ you wish to hide.

\ \

\ The query sequences in the SAM/BAM alignment representation \ are normalized to the + strand of the reference genome\ (see the SAM Format Specification\ for more information on the SAM/BAM file format). If a query sequence was\ originally the reverse of what has been stored and aligned, it will have the\ following\ flag:\ 

\
(0x10) Read is on '-' strand.\

\

\ BAM/SAM alignment representations also have tags. The following tags are associated with this track: RG, CQ, CS, and MD.

\ \

Mapping quality is not available for this track and so, in accordance with the\ SAM Format Specification,\ a score of 255 is used.

\ \

Methods

\

\ Sample genomic DNA was isolated, hydrosheared at a given size-range, then\ ligated with specific DNA linker sequence at both ends, followed by\ gel-selection of the desired size, e.g., 1 kb, 10 kb, etc. respectively. \ The DNA fragments modified with linker at both ends (e.g., 10 kb) were then\ circularized by ligation, followed by restriction digest with enzyme EcoP15I to\ generate DNA PETs (25 bp tag from each end). The PETs were ligated with SOLiD\ sequencing adaptors at both ends, then amplified by PCR and purified as complex\ templates for high throughput DNA sequencing. The current DNA PET data sets\ submitted are mostly generated by SOLiD platform. \ Cells were grown according to the approved \ ENCODE cell culture\ protocols.\

\

\ Data:\ Reads of DNA PETs were mapped onto reference genome, GRCh37, hg19, excluding mitochondrion, haplotypes, randoms and chromosome Y. Majority of the PETs mapped on the same chromosome in correct orientations and within expected distance span (e.g., a 10 kb DNA PET was expected mapping on ~10 kb span distance). A small portion of misaligned PETs, called discordant PETs, mapped either too far from each other, had wrong orientations, or in different chromosomes indicating various genome structure or variations observed between the sample and the reference genome. The variations could be due to deletion, inversion, tandem repeats, trans-location, fusion etc.\

\

Mapping parameters:\ Mapping was done using Applied Biosystems' SOLiD alignment and pairing pipeline. The ungapped alignment is done in color space. Seed and extend strategy is adopted where initial seed length of 25 is mapped with maximum of 2 mismatches and then extended to read length, each color space match is awarded a score of +1 and each mismatch is awarded a penalty of -2.\ \ Read Score = read length - # of mismatches - 2 * # of mismatches\ \ After extension each read is trimmed to its maximum score, shortest length.\ \ The color space sequences are then converted into base space and checked to ensure that each sequence has a maximum of 2 base pair mismatches. If any sequence has more than 2 mismatches, then that pair is discarded. The final output is converted into SAM/BAM format.\

\ \

Verification

\ Representative structural variations identified by DNA PET data have been \ verified by targeted PCR and sequencing analysis to confirm the predicted \ rearrangement sites. Some of them have also been validated by FISH.\ \

Credits

\ \

The GIS DNA PET libraries and sequence data for genome structural \ variation analysis were produced at the \ Genome Institute of\ Singapore. \ The data were mapped and analyzed by scientists Xiaoan Ruan, Atif Shahab, \ Chialin Wei, and Yijun Ruan at the Genome Institute of Singapore.\

\ Contact:\ Yijun Ruan (now at The Jackson Laboratory) \ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior \ consent, submit publications that use an unpublished ENCODE dataset until \ nine months following the release of the dataset. This date is listed in \ the Restricted Until column, above. The full data release policy \ for ENCODE is available \ here.

\ varRep 1 bamColorMode off\ bamGrayMode aliQual\ baseColorDefault diffBases\ baseColorUseSequence lfExtra\ compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell fragSize=fragSize\ dimensions dimensionX=cellType dimensionY=fragSize\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line fragSize=Frag_Size view=View dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until md5sum=md5sum\ group varRep\ indelDoubleInsert on\ indelQueryInsert on\ longLabel ENCODE Genome Institute of Singapore DNA Paired-End Ditags\ maxWindowToDraw 1000000\ noColorTag .\ noInherit on\ pairEndsByName on\ shortLabel GIS DNA PET\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 100\ showNames off\ sortOrder cellType=+ fragSize=+\ subGroup1 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1K562=K562 (Tier_1)\ subGroup2 fragSize Frag_Size a1K=1k b5K=5k c10K=10k d20K=20k\ track wgEncodeGisDnaPet\ type bam\ wgEncodeGisRnaPet GIS RNA PET bed 3 RNA Sub-cellular Localization by Paired-end diTag Sequencing from ENCODE/GIS 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

This track was produced as part of the ENCODE Transcriptome Project\ and shows the starts and ends of full-length mRNA transcripts determined\ by Gene Identification Signature (GIS) paired-end ditag (PET) sequencing using\ RNA extracts\ from different\ sub-cellular\ localizations\ in different\ cell lines.\ Short tags used in GIS-PET sequencing provide signatures\ of the 5' start and the 3' end of individual mRNA transcripts, thus\ demarcating the first and last exon, and contain enough coding information\ to map the tags uniquely to the genome, in turn making it possible to\ identify unconventional fusion transcripts. These 5' and 3' paired-end tags\ extracted by restriction enzyme are ligated together to form a ditag for sequencing,\ where the 3' end includes two adenine bases from the polyA tail thereby \ reducing the relative amount of unique sequence.\ The RNA-PET information provided in this track is composed of two different\ PET length versions based on how the PETs were extracted using different\ restriction enzymes. The cloning-based PET method (18 bp and 16 bp for each of\ the 5' and 3' ends) is an earlier version (Ng et al., 2006). While the\ cloning-free PET approach (27 bp and 25 bp for each of the 5' and 3' ends) is a\ recently modified version which uses Type III restriction enzyme EcoP15I\ to generate a longer length of PET (Ruan and Ruan, 2012), \ which results in a significant enhancement\ in both library construction and mapping efficiency. Both versions of PET\ templates were sequenced by Illumina platform at 2 x 36 bp paired-end\ sequencing.\ See the Methods and References sections below for more details.\

\ \

Display Conventions and Configuration

\ \

\ This track is a multi-view composite track that contains multiple data types\ (views). For each view, there are multiple subtracks that display\ individually on the browser. Instructions for configuring multi-view tracks\ are here.\ Color differences among the views are arbitrary. They provide a visual cue for\ distinguishing between the different cell types and compartments.\

\ \
\
Clusters\
The Clusters view shows clusters built from the alignments.\ In the graphical display, the ends are represented by blocks connected by a\ horizontal line. In full and packed display modes, the arrowheads on the\ horizontal line represent the direction of transcription. Although some of\ the subtracks have score information most of them do not and score filtering\ has been disabled.\
Plus Raw Signal\
The Plus Raw Signal view graphs the base-by-base density of tags on the forward strand.\
Minus Raw Signal\
The Minus Raw Signal view graphs the base-by-base density of tags on the reverse strand.\
Alignments\
The Alignments view shows alignment of individual PET sequences.\ The alignment file follows the standard SAM/BAM format indicated in the\ SAM Format Specification.\ Some files also use the tag XA, generated by Bowtie, to represent the total\ number of mismatches in the tag.\
\

Metadata for a particular subtrack can be found by clicking the down arrow\ in the list of subtracks.

\ \ \

Methods

\ \

\ Cells were grown according to the approved\ ENCODE cell culture protocols.\ Two different GIS RNA-PET protocols were used to generate the full-length transcriptome\ PETs: one is based on a cloning-free RNA-PET library construction and sequencing strategy (Ruan and Ruan, 2012),\ and the other is a cloning-based library construction (Ng et al., 2005)\ and recent Illumina paired-end sequencing.\

\

Cloning-free RNA-PET (52 bp reads, 27 bp and 25 bp tag for each of the 5' and 3' ends)

\

\ Method:\ The cloning-free RNA-PET libraries were generated from polyA mRNA\ samples and constructed using a recently modified GIS protocol (Ruan and Ruan, 2012).\ High quality total RNA was used as starting material and purified with a\ MACs polyT column to obtain full-length polyA mRNAs. Approximately 5\ µgrams of enriched polyA mRNA was used for reverse transcription\ to convert polyA mRNA to full-length cDNA. Specific linker sequences\ were ligated to the full-length cDNA. The modified cDNA was circularized\ by ligation generating circular cDNA molecules. The 27 bp tag from each\ end of the full-length cDNA was extracted by type III enzyme EcoP15I\ digestion. The resulting PETs were ligated with sequencing adaptors at\ both ends, amplified by PCR, and further purified as complex templates\ for paired-end sequencing using Illumina platforms.\

\

\ Data:\ The sequenced RNA-PETs resulted in reads of 27 bp and 25 bp corresponding\ to the 5' and 3' end of each cDNA, respectively.\ Redundant and noisy reads were excluded from downstream\ analysis. Strand-specific orientation of each PET was determined using\ the barcode built into the sequencing template. The oriented RNA-PET was\ mapped onto the reference genome allowing up to two mismatches. The majority\ of the PETs mapped to known transcripts. A small portion of misaligned PETs,\ defined as discordant PETs, mapped too far from each tag, with wrong\ orientations, or to different chromosomes. These discordant PETs indicated\ the existence of some transcription variants that could be caused by\ genomic structural variants such as fusions, deletions, insertions,\ inversions, tandem repeats, translocations or RNA trans-splicing etc. \

\ \

Cloning-based RNA-PET (34 bp reads, 18 bp and 16 bp tag for each of the 5' and 3' ends)

\

\ Method:\ The cloning-based RNA-PET (GIS-PET) libraries were generated from polyA RNA samples\ and constructed using the protocol described by Ng et al., 2005. Total RNA in good\ quality was used as starting material and further purified with a MACs polyT column\ to enrich polyA mRNA. Approximately 10 µgrams of polyA enriched mRNA was\ reverse transcribed resulting in full-length cDNA. The obtained full-length\ cDNA was modified with specific linker sequences and ligated to a GIS-developed (pGIS4)\ vector. The resulting plasmids form a complex full-length cDNA library, which\ was cloned into E. coli. The plasmid DNA was then isolated from the library,\ followed by MmeI (a type II enzyme) digestion to generate a final length of 18 bp/16 bp\ ditags from each end of the full-length cDNA. The single ditag (or PET) was then\ ligated to form a diPET structure (a concatemer with two unrelated PET linked by\ a linker sequence) to facilitate Illumina paired-end sequencing. \

\ \

Data:Sequencing of clone-based RNA-PETs resulted in paired reads of 18 bp\ and 16 bp corresponding to the 5' and 3' end of each cDNA, respectively. The redundant\ reads were filtered out and unique reads were included for analysis. PET sequences\ were then mapped to (GRCh37, hg19, excluding mitochondrion, haplotypes, randoms\ and chromosome Y) reference genome using the following specific criteria\ (Ruan et al., 2007):

\
    \
  • A minimal continuous 16 bp match must exist for the 5' signature; the 3' signature\ must have a minimal continuous 14 bp match
    • \
  • Both 5' and 3' signatures must be present on the same chromosome
    • \
  • Their 5' to 3' orientation must be correct (5' signature followed by 3' signature)
    • \
  • The maximal genomic span of a PET genomic alignment must be less than one million bp
    • \
\

\ PETs mapping to 2-10 locations are also included and may represent duplicated genes\ or pseudogenes in the genome.\ A majority of the PETs mapped to known transcripts or splice variants. A small\ portion of misaligned PETs,\ defined as discordant PETs, mapped either too far from each other, in the wrong orientation, or\ to different chromosomes. The presence of discordant PETs indicates that some\ transcriptional variants exist. These variants could be caused by genomic\ structural variants such as fusions, deletions, insertions, inversions, tandem\ repeats, translocation or RNA trans-splicing etc. \

\

Clusters

\

PETs were clustered using the following procedure. The mapping location of\ the 5' and 3' tag of a given PET was extended by 100 bp in both directions\ creating 5' and 3' search windows. If the 5' and 3' tags of a second PET mapped\ within the 5' and 3' search window of the first PET then the two PETs were clustered\ and the search windows were adjusted so that they contained the tag\ extensions of the second PET. PETs which subsequently\ mapped with their 5' and 3' tags within the adjusted 5' and 3' search\ window, respectively, were also assigned to this cluster \ and the search window was readjusted. This iterative process continued\ until no new PETs fell within the search window. This process is\ repeated until all PETs were assigned to a cluster.

\ \

\ The total count of PET sequences mapped to the same locus but with\ slight nucleotide differences may reflect the expression level of the\ transcripts. PETs that mapped to multiple locations may represent low\ complexity or repetitive sequences.\

\ \

Verification

\

To assess overall PET quality and mapping specificity, the top ten\ most abundant PET clusters that mapped to well-characterized\ known genes were examined. Over 99% of the PETs represented full-length\ transcripts, and the majority fell within 10 bp of the\ known 5' and 3' boundaries of these transcripts. The PET mapping was\ further verified by confirming the existence of physical\ cDNA clones represented by the ditags. PCR primers were designed\ based on the PET sequences and amplified the corresponding cDNA\ inserts either from full-length cDNA library (cloning-based PET)\ or from isolated total RNA (cloning-free PET) for sequencing confirmation. \

\ \

Release Notes

\

\ This is Release 2 (Aug 2012) of this track. It adds data for tier 2\ cell lines (A549, SK-N-SH, IMR90, and MCF-7). This newer data has no\ scores in the Clusters files. \

\

\ Note: As mentioned above, this track mixes two different methodologies.\ The clone-based data has functioning score fields in\ the Cluster files which could be used for filtering or shading.\ However, the clone-free data either has scores that are not scaled\ well or scores that are set to zero for all items. Therefore, the scores \ are useful for some tables and not for others.\ \

\ \

Credits

\ \

The GIS RNA-PET libraries and sequence data for transcriptome\ analysis were generated and analyzed by\ scientists Xiaoan Ruan, Atif Shahab, Chialin Wei, and Yijun Ruan at the \ Genome Institute of\ Singapore. \

\

Contact:\ Yijun Ruan

\ \

References

\ \

Ng P, Tan JJ, Ooi HS, Lee YL, Chiu KP, Fullwood MJ, Srinivasan KG, Perbost C,\ Du L, Sung WK, et al., Multiplex sequencing of paired-end ditags (MS-PET): \ a strategy for the ultra-high-throughput analysis of transcriptomes and genomes.\ Nucleic Acids Res. 2006;34:e84.\

\ \

Ng P, Wei CL, Sung WK, Chiu KP, Lipovich L, Ang CC, Gupta S, Shahab A, \ Ridwan A, Wong CH, et al., Gene identification signature (GIS) analysis for \ transcriptome characterization and genome annotation. \ Nat Methods. 2005;2:105-111.\

\ \

Ng P, Wei CL, Ruan Y, \ Paired-end diTagging for transcriptome and genome analysis.\ Curr Protoc Mol Biol. 2007 Jul 21.12.\

\ \

Ruan Y, Ooi HS, Choo SW, Chiu KP, Zhao XD, Srinivasan KG, Yao F, Choo CY, \ Liu J, Ariyaratne P, et al., Fusion transcripts and transcribed retrotransposed \ loci discovered through comprehensive transcriptome analysis using Paired-End \ diTags (PETs).\ Genome Res. 2007;17:828-838.\

\ \

Ruan X and Ruan Y, Genome wide full-length transcript analysis using 5' and 3' paired-end-tag next generation sequencing (RNA-PET). Methods Mol Biol. 2012;809:535-62.\

\ \ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior \ consent, submit publications that use an unpublished ENCODE dataset until \ nine months following the release of the dataset. This date is listed in \ the Restricted Until column, above. The full data release policy \ for ENCODE is available \ here.

\ \ expression 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell localization=localization rnaExtract=rnaExtract\ dimensions dimensionX=localization dimensionY=cellType dimensionB=rank dimensionD=cloned dimensionsC=rnaExtract\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line localization=Localization rnaExtract=RNA
Extract labVersion=Lab_Version replicate=Replicate view=View bioRep=Cross_Lab
BioReplicate labExpId=Lab
Exp_ID dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession seqPlatform=Platform fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ filterComposite dimensionB=all dimensionC=all dimensionD=all\ group expression\ html wgEncodeGisRnaPet.release2\ longLabel RNA Sub-cellular Localization by Paired-end diTag Sequencing from ENCODE/GIS\ noInherit on\ shortLabel GIS RNA PET\ sortOrder cellType=+ localization=+ cloned=+ view=+ rank=+\ subGroup1 view Views v1Clusters=Clusters v2PlusRawSignal=Plus_Raw_Signal v2MinusRawSignal=Minus_Raw_Signal v3Alignments=Alignments\ subGroup2 cellType Cell_Line aGM12878=GM12878 (Tier_1) aH1HESC=H1-hESC (Tier_1) aK562=K562 (Tier_1) bA549=A549 (Tier_2) bHELAS3=HeLa-S3 (Tier_2) bHEPG2=HepG2 (Tier_2) bHUVEC=HUVEC (Tier_2) bIMR90=IMR90 (Tier_2) bMCF7=MCF-7 (Tier_2) bSKNSH=SK-N-SH (Tier_2) cNHEK=NHEK cPROSTATE=Prostate\ subGroup3 localization Localization cell=Whole_Cell cytosol=Cytosol nucleus=Nucleus polysome=Polysome nucleoplasm=Nucleoplasm chromatin=Chromatin nucleolus=Nucleolus\ subGroup4 rnaExtract RNA_Extract PAP=PolyA+ total=Total_RNA\ subGroup5 rep Rep rep1=1 rep2=2 rep3=3 rep4=4\ subGroup6 rank Replicate_rank rank1=1st rank2=2nd none=Pooled\ subGroup7 cloned Library_Prep_Method Free=Clone-free Based=Clone-based\ track wgEncodeGisRnaPet\ type bed 3\ wgEncodeGisRnaSeq GIS RNA-seq bed 3 RNA-seq from ENCODE/Genome Institute of Singapore 1 100 0 0 0 127 127 127 0 0 0

Description

\ \

This track is produced as part of the ENCODE Transcriptome Project.\ It shows high throughput sequencing of \ \ RNA samples from \ \ tissues or sub cellular compartments from \ cell lines\ included in the ENCODE Transcriptome subproject. The overall \ goal of the ENCODE project is to identify and characterize all functional \ elements in the sequence of the human genome.\

\ \

Display Conventions and Configuration

\ \

\ This track is a multi-view composite track that contains multiple data types\ (views). For each view, there are multiple subtracks that\ display individually on the browser. Instructions for configuring multi-view\ tracks are here.\

To show only selected subtracks, uncheck the boxes next to the tracks that \ you wish to hide.

\ \

Color differences among the views are arbitrary. They provide a \ visual cue for \ distinguishing between the different cell types.

\ \
\
Plus Raw Signal\
The Plus Raw Signal view graphs the base-by-base density of alignments \ on the + strand.\
Minus Raw Signal\
The Minus Raw Signal view graphs the base-by-base density of alignments\ on the - strand.\
Alignments\
The Alignments view shows reads mapped to the genome, both split alignments and alignments mapped to one exon. Sequences determined to be transcribed on the positive strand are shown in blue. \ Sequences determined to be transcribed on the negative strand are shown in \ red. Sequences for which the direction of \ transcription was not able to be determined are shown in black. \ For more information on the XL XJ and XU custom tags used in these files, please contact the producing lab. Please see the Bowtie Manual for more information about the SAM Bowtie output (including other tags) and the \ SAM Format Specification \ for more information on the SAM/BAM file format.\
\ \

Methods

\ \

\ The RNA-Seq data were generated from high quality polyA RNA, and the RNA-Seq\ libraries were constructed using SOLiD Whole Transcriptome (WT) protocol and\ reagent kit. Total RNA in good quality was used as starting materials and\ purified twice through MACs polyT column aimed to enrich polyA and remove any\ contaminants (e.g., rRNA, tRNA, DNA, protein etc.). A one microgram enriched\ polyA RNA sample was then fragmented to small pieces, and a gel-based selection\ method was performed to collect fragmented random polyA at a size-range of\ 50-150 nt in length. The collected fragmental RNA was then hybridized and\ ligated to a mix of adapters provided from ABI, followed by reverse\ transcription to generate corresponding cDNAs. The resulting cDNA library was\ further amplified by PCR and sequenced by SOLiD platform for single reads at 35\ bp length (new version in 50 bp length). \ Cells were grown according to the approved \ ENCODE cell culture\ protocols.\

\ \

\ Data: The SOLiD-generated RNA-Seq reads were 35 bp in length. An \ initial filtering process was performed to remove any non-desirable contamination\ sequences, such as rRNA, tRNA, and repeats etc. A read-split mapping approach\ was developed to map the 35 bp reads onto the reference genome\ (GRCh37/hg19) excluding mitochondrion, haplotypes, randoms and chromosome Y.\

\ \

\ Mapping parameters: Strand specific mapping was done using Applied Biosystems' SOLiD \ alignment where all the reads were mapped to the genome, and to exon-exon junction database. Seed and extend strategy is adopted where initial seed length of 25 is mapped with maximum of 2 mismatches and then extended to read length, each color space match is awarded a score of +1 and each mismatch is awarded a penalty of -2.\

\ \

\ After extension each read is trimmed to its maximum score, shortest length.\ The color space sequences are then converted into base space and checked to ensure that each sequence has a maximum of 2 base pair mismatches. If any sequence has more than 2 mismatches, then that sequence is discarded.\

\ \

Credits

\ \

The GIS RNA-seq libraries and sequence data for transcriptome analysis were\ produced at the \ Genome Institute of\ Singapore. \ The data were mapped and analyzed by scientists from the Genome Institute of \ Singapore.\

\ \

Contact: \ RUAN Xiaoan\ \ \

\ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior \ consent, submit publications that use an unpublished ENCODE dataset until \ nine months following the release of the dataset. This date is listed in \ the Restricted Until column, above. The full data release policy \ for ENCODE is available \ here.

\ expression 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell localization=localization rnaExtract=rnaExtract\ dimensionAchecked rep1,rep2\ dimensions dimensionY=localization dimensionX=cellType dimensionA=rep\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line localization=Localization rnaExtract=RNA
Extract replicate=Rep bioRep=Cross_Lab
Replicate labExpId=Lab
Exp_ID view=View dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until md5sum=md5sum\ group expression\ longLabel RNA-seq from ENCODE/Genome Institute of Singapore\ noInherit on\ priority 0\ shortLabel GIS RNA-seq\ sortOrder cellType=+ localization=+ rnaExtract=+ view=+ rep=+\ subGroup1 view Views PlusRawSignal=Plus_Raw_Signal MinusRawSignal=Minus_Raw_Signal AllRawSignal=All_Raw_Signal Alignments=Alignments\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1)\ subGroup3 rep Replicate rep1=1 rep2=2\ subGroup4 rnaExtract RNA_Extract longPolyA=PolyA+\ subGroup5 localization Localization cell=Whole_Cell cytosol=Cytosol\ superTrack wgEncodeRnaSeqSuper dense\ track wgEncodeGisRnaSeq\ type bed 3\ encTfChipPkENCFF710VEH GM12878 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12878 from ENCODE 3 (ENCFF710VEH) 1 100 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12878 from ENCODE 3 (ENCFF710VEH)\ parent encTfChipPk off\ shortLabel GM12878 CTCF 2\ subGroups cellType=GM12878 factor=CTCF\ track encTfChipPkENCFF710VEH\ wgEncodeHaibTfbsGm12878Pax5n19Pcr1xRawRep1 GM78 PAX5 PCR1 1 bigWig 0.230610 131.505005 GM12878 PAX5-N19 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 100 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 PAX5-N19 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 PAX5 PCR1 1\ subGroups view=RawSignal factor=PAX5N19 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Pax5n19Pcr1xRawRep1\ type bigWig 0.230610 131.505005\ wgEncodeSydhTfbsGm12878Znf274StdSig GM78 Z274 Std bigWig 1.000000 11447.000000 GM12878 ZNF274 Standard ChIP-seq Signal from ENCODE/SYDH 2 100 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ZNF274 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal on\ shortLabel GM78 Z274 Std\ subGroups view=Signal factor=ZNF274 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Znf274StdSig\ type bigWig 1.000000 11447.000000\ gnfAtlas2 GNF Atlas 2 expRatio GNF Expression Atlas 2 0 100 0 0 0 127 127 127 0 0 0

Description

\

This track shows expression data from the GNF Gene Expression\ Atlas 2. This contains two replicates each of 79 human\ tissues run over Affymetrix microarrays. \ By default, averages of related tissues are shown. Display all tissues\ by selecting "All Arrays" from the "Combine arrays" menu\ on the track settings page.\ As is standard with microarray data red indicates overexpression in the \ tissue, and green indicates underexpression. You may want to view gene\ expression with the Gene Sorter as well as the Genome Browser.

\ \

Credits

\ Thanks to the \ Genomics Institute of the Novartis\ Research Foundation (GNF) for the data underlying this track. \ \

References

\

\ Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G\ et al.\ \ A gene atlas of the mouse and human protein-encoding transcriptomes.\ Proc Natl Acad Sci U S A. 2004 Apr 20;101(16):6062-7.\ PMID: 15075390; PMC: PMC395923\

\ expression 1 expDrawExons on\ expScale 4.0\ expStep 0.5\ expTable gnfHumanAtlas2MedianExps\ group expression\ groupings gnfHumanAtlas2Groups\ longLabel GNF Expression Atlas 2\ shortLabel GNF Atlas 2\ track gnfAtlas2\ type expRatio\ visibility hide\ gnomadSuper gnomAD Genome Aggregation Database (gnomAD) - Variants, Coverage, and Constraint 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ The tracks that are listed here contain data from unrelated individuals sequenced as part of\ various population-genetic and disease-specific studies collected by the Genome Aggregation Database (gnomAD).\ Individuals affected by severe pediatric diseases and first-degree relatives were excluded from the\ studies. However, some individuals with severe disease may still have remained in the datasets,\ although probably at an equivalent or lower frequency than observed in the general population. Raw\ data from all studies have been reprocessed using a standardized pipeline and jointly variant-called\ process, which aims to increase consistency between projects. For more information on the processing\ pipeline and population annotations, see the following blog post gnomAD,\ gnomAD v2.1 \ and the 2.0.2 README.

\ \

\ The available data tracks are:\

\

\ \

Display Conventions

\

\ These tracks are multi-view composite tracks that contain multiple data types (views). Each view\ within a track has separate display controls, as described here. Most gnomAD tracks contain\ multiple subtracks, corresponding to subsets of data. If a track contains many subtracks, only some\ subracks will be displayed by default. The user can select which subtracks are displayed via the\ display controls on the track details page.\

\ \

Data Access

\

\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that \ can be downloaded from our download server, subject\ to the conditions set forth by the gnomAD consortium (see below). Coverage values\ for the genome are in bigWig files in\ the coverage/ subdirectory. Variant VCFs can be found in the vcf/ subdirectory.

\

\ The data can also be found directly from the gnomAD downloads page. Please refer to \ our mailing list archives for questions, or our Data Access FAQ for more information.

\ \

\ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\

\ \

Credits

\

\ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the ODC Open Database License\ (ODbL) as described here.\

\ \

References

\ \

\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ \ Analysis of protein-coding genetic variation in 60,706 humans.\ Nature. 2016 Aug 18;536(7616):285-91.\ PMID: 27535533; PMC: PMC5018207\

\ \

\ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ \ The mutational constraint spectrum quantified from variation in 141,456 humans.\ Nature. 2020 May;581(7809):434-443.\ PMID: 32461654; PMC: PMC7334197\

\ \

\ Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\ Gauthier LD, Wang H et al.\ \ A structural variation reference for medical and population genetics.\ Nature. 2020 May;581(7809):444-451.\ PMID: 32461652; PMC: PMC7334194\

\

\ Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\ Satterstrom FK, O'Donnell-Luria AH et al.\ \ Transcript expression-aware annotation improves rare variant interpretation.\ Nature. 2020 May;581(7809):452-458.\ PMID: 32461655; PMC: PMC7334198\

\ \ varRep 0 group varRep\ html gnomad\ longLabel Genome Aggregation Database (gnomAD) - Variants, Coverage, and Constraint\ pennantIcon Updated red ../goldenPath/newsarch.html#032624 "Updated Mar. 26, 2024"\ shortLabel gnomAD\ superTrack on\ track gnomadSuper\ gnomadPLI gnomAD Constraint Metrics bigBed 12 Genome Aggregation Database (gnomAD) - Predicted Constraint Metrics (pLI and Z-scores) 3 100 0 0 0 127 127 127 0 0 0

Description

\

\ The Genome Aggregation Database (gnomAD) - Predicted Constraint Metrics track set contains\ metrics of pathogenicity per-gene as predicted for gnomAD v2.1.1 and identifies genes subject to\ strong selection against various classes of mutation.\

\ \

\ This track includes several subtracks of constraint metrics calculated at gene (canonical\ transcript), transcript and transcript-region level. For more information see the following\ blog post.\ The metrics include:\

    \
  • Observed and expected variant counts per transcript/gene\
  • Observed/Expected ratio (O/E)\
  • Z-scores of the observed counts compared to expected\
  • Probability of loss of function intolerance (pLI), for predicted loss-of-function (pLoF) variation only\
  • Chi-Squared difference of observed to expected counts, for the regional missense constraint track only\
\

\ \

Display Conventions and Configuration

\

\ There are three "groups" of tracks in this set:\

    \
  1. Gene/Transcript LoF Constraint tracks: Predicted constraint metrics at the whole gene\ level or whole transcript level for three different types of variation: missense, synonymous,\ and predicted loss of function. The Gene Constraint track displays metrics for a canonical \ transcript per gene defined as the longest isoform. The Transcript Constraint track displays \ metrics for all transcript isoforms. Items on both tracks are shaded according to the pLI score,\ with outlier items shaded in grey.\
    LOEUF score legend
    \
  2. Gene/Transcript Missense Constraint tracks: The missense constraint tracks are built\ similarly to the LoF constraint tracks, however the items displayed are based on \ missense Z scores.\ All items are colored black, and individual Z scores can be seen on mouseover. \
  3. Regional Constraint track: Missense-variation constrained regions at the sub-genic\ level. This track displays metrics for transcripts that have two or more regions with \ significantly different levels of missense constraint. All items are colored black.\
\ All tracks follow the general configuration settings for bigBed tracks. Mouseover on the \ Gene/Transcript Constraint tracks shows the pLI score and the loss of function \ observed/expected upper bound fraction (LOEUF), while mouseover on the Regional\ Constraint track shows only the missense O/E ratio. Clicking on items in any track brings\ up a table of constraint metrics.\

\ \

\ Clicking the grey box to the left of the track, or right-clicking and choosing the Configure option,\ brings up the interface for filtering items based on their pLI score, or labeling the items\ based on their Ensembl identifier and/or Gene Name.\

\ \

Methods

\

\ Please see the gnomAD browser help page and FAQ for further explanation of the topics below.

\ \

Observed and Expected Variant Counts

\

\ Observed count: The number of unique single-nucleotide variants in each transcript/gene\ with 123 or fewer alternative alleles (MAF < 0.1%).\

\

\ Expected count: A depth-corrected probability prediction model that takes into account\ sequence context, coverage, and methylation was used to predict expected\ variant counts. For more information please see Lek et al., 2016.\

\

\ Variants found in exons with a median depth < 1 were removed from both counts.\

\ The O/E constraint score is the ratio of the observed/expected variants in that gene. Each item in\ this track shows the O/E ratio for three different types of variation: missense, synonymous, and\ loss-of-function. The O/E ratio is a continuous measurement of how tolerant a gene or\ transcript is to a certain class of variation. When a gene has a low O/E value, it is under stronger\ selection for that class of variation than a gene with a higher O/E value. Because Counts depend on\ gene size and sample size, the precision of the values varies a lot from one gene to the next. \ Therefore, the 90% confidence interval (CI) is also displayed along with the O/E ratio to better\ assist interpretation of the scores.\

\ When evaluating how constrained a gene is, it is essential to consider the CI when using O/E. In \ research and clinical interpretation of Mendelian cases, pLI > 0.9 has been widely used for \ filtering. Accordingly, the Gnomad team suggests using the upper bound of the O/E confidence interval\ LOEUF < 0.35 as a threshold if needed.\

\ Please see the Methods section below for more information about how the scores were calculated.\

\ \

pLI and Z-scores

\

\ The pLI and Z-scores of the deviation of observed variant counts relative to the expected number \ are intended to measure how constrained or intolerant a gene or transcript is to a specific type of\ variation. Genes or transcripts that are particularly depleted of a specific class of variation\ (as observed in the gnomAD data set) are considered intolerant of that specific type of variation.\ Z-scores are available for the missense and synonynmous categories and pLI scores are available for\ the loss-of-function variation.\

\

\ NOTE: The Regional Constraint track data reflects regions within transcripts that are\ intolerant of missense variation within the ExAc dataset and was calculated with the method\ described by Samocha et al., 2017.\

\

\ Missense and Synonymous: Positive Z-scores indicate more constraint (fewer observed \ variants than expected), and negative scores indicate less constraint (more observed variants than\ expected). A greater Z-score indicates more intolerance to the class of variation. Z-scores\ were generated by a sequence-context-based mutational model that predicted the number of expected\ rare (< 1% MAF) variants per transcript. The square root of the chi-squared value of the \ deviation of observed counts from expected counts was multiplied by -1 if the observed count was\ greater than the expected and vice versa. For the synonymous score, each Z-score was corrected by\ dividing by the standard deviation of all synonymous Z-scores between -5 and 5. For the missense\ scores, a mirrored distribution of all Z-scores between -5 and 0 was created, and then all missense\ Z-scores were corrected by dividing by the standard deviation of the Z-score of the mirror\ distribution.\

\

\ Loss-of-function: pLI closer to 1 indicates that the gene or transcript cannot tolerate\ protein truncating variation (nonsense, splice acceptor and splice donor variation). The gnomAD\ team recommends transcripts with a pLI >= 0.9 for the set of transcripts extremely intolerant\ to truncating variants. pLI is based on the idea that transcripts can be classified into three\ categories:\

    \
  • null: heterozygous or homozygous protein truncating variation is completely tolerated\
  • recessive: heterozygous variants are tolerated but homozygous variants are not\
  • haploinsufficient: heterozygous variants are not tolerated\
\ An expectation-maximization algorithm was then used to assign a probability of belonging in each\ class to each gene or transcript. pLI is the probability of belonging in the haploinsufficient class.\

\ \

\ Please see Samocha et al., 2014 and Lek et al., 2016 for further discussion of these metrics.\

\ \

Transcripts Included

\

\ Transcripts from GENCODE v19 were filtered according to the following criteria:\

    \
  • Must have methionine at start of coding sequence\
  • Must have stop codon at end of coding sequence\
  • Must be divisible by 3\
  • Must have at least one observed variant when removing exons with median depth < 1\
  • Must have reasonable number of missense and synonymous variants as determined by a Z-score cutoff\
\ After filtering the transcript set, 18225 transcripts were left.\

\ \ \

UCSC Track Methods

\

Gene and Transcript Constraint tracks

\

\ Per gene and per transcript data were downloaded from the gnomAD Google Storage bucket:\ 

\
gs://gnomad-public/release/2.1.1/constraint/gnomad.v2.1.1.lof_metrics.by_gene.txt.bgz\
gs://gnomad-public/release/2.1.1/constraint/gnomad.v2.1.1.lof_metrics.by_transcript.txt.bgz\
\ These data were then joined to the Gencode v19 set of genes/transcripts available at the UCSC\ Genome Browser and then transformed into a bigBed 12+5. For the full list of commands used to\ make this track please see the "gnomAD 2 pLI and other loss-of-function metrics" section\ of the\ makedoc.\

\

Regional Constraint track

\

\ Supplementary Table 4 from the \ associated publication was downloaded and joined to the Gencode v19 set of transcripts\ available at UCSC and then transformed into a bigBed 12+6. For the full list of commands\ used to make this track please the "gnomAD Missense Constraint Scores" section of the\ makedoc.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all \ others, is available via our API. However, for bulk \ processing, it is recommended to download the dataset. The genome annotation is stored in a bigBed \ file that can be downloaded from the\ download server. The exact\ filenames can be found in the track configuration file. Annotations can be converted to ASCII text\ by our tool bigBedToBed which can be compiled from the source code or downloaded as\ a precompiled binary for your system. Instructions for downloading source code and binaries can be\ found here. The tool\ can also be used to obtain only features within a given range, for example:

\ 
\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/gnomAD/pLI/pliByTranscript.bb -chrom=chr6 -start=0 -end=1000000 stdout\
\

\ Please refer to our\ mailing list archives\ for questions and example queries, or our\ Data Access FAQ\ for more information.\

\ \

\ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\

\ \

Credits

\

\ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the ODC Open Database License\ (ODbL) as described here.\

\ \

References

\ \

\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ \ Analysis of protein-coding genetic variation in 60,706 humans.\ Nature. 2016 Aug 18;536(7616):285-91.\ PMID: 27535533; PMC: PMC5018207\

\ \

\ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ \ The mutational constraint spectrum quantified from variation in 141,456 humans.\ Nature. 2020 May;581(7809):434-443.\ PMID: 32461654; PMC: PMC7334197\

\ \

\ Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\ Gauthier LD, Wang H et al.\ \ A structural variation reference for medical and population genetics.\ Nature. 2020 May;581(7809):444-451.\ PMID: 32461652; PMC: PMC7334194\

\ \

\ Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\ Satterstrom FK, O'Donnell-Luria AH et al.\ \ Transcript expression-aware annotation improves rare variant interpretation.\ Nature. 2020 May;581(7809):452-458.\ PMID: 32461655; PMC: PMC7334198\

\ \ varRep 1 compositeTrack On\ dataVersion Release 2.1.1 (March 6, 2019)\ group varRep\ labelFields name,geneName\ longLabel Genome Aggregation Database (gnomAD) - Predicted Constraint Metrics (pLI and Z-scores)\ parent gnomadSuper\ shortLabel gnomAD Constraint Metrics\ track gnomadPLI\ type bigBed 12\ visibility pack\ gnomadCoverage gnomAD Coverage bigWig Genome Aggregation Database (gnomAD) - Genome and Exome Sample Coverage 1 100 0 0 0 127 127 127 0 0 0

Description

\

\ The Genome Aggregation Database (gnomAD) - Genome and Exome Sample Coverage track\ set shows various read-depth variant metrics calculated separately for exomes and genomes on a ~10%\ subset of the v2.0.2 samples. Multiple exome capture methods and sequencing chemistries were used\ for sequencing, so coverage varies between individuals across sites. This variation of coverage is\ incorporated in this track. \

\ \

\ This track includes several subtracks of average coverage metrics and sample percentage of coverage.\ For more information on the processing pipeline and population annotations, see the following\ blog post\ and the 2.0.2 README.

\

\ \

Display Conventions

\

\ The Average Sample Coverage graphs display the mean and median read depth of the\ samples at each base position. The details page shows calculated sample percentages for the range\ of sequence within the browser window.\

\ \

\ The nX Coverage Percentage graphs display the percentage of samples whose read\ depth is at least 1X, 5X, 10X, 15X, 20X, 25X, 30X, 50X, and 100X at each base position. The details\ page shows calculated sample percentages for the range of sequence within the browser window.\

\ \

Data Access

\ \

\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that \ can be downloaded from our download server, subject\ to the conditions set forth by the gnomAD consortium (see below). Coverage values\ for the genome are in bigWig files in\ the coverage/ subdirectory. Variant VCFs can be found in the vcf/ subdirectory.

\

\ The data can also be found directly from the gnomAD downloads page. Please refer to \ our mailing list archives for questions, or our Data Access FAQ for more information.

\ \

\ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\

\ \

Credits

\

\ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the ODC Open Database License\ (ODbL) as described here.\

\ \

References

\ \

\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ \ Analysis of protein-coding genetic variation in 60,706 humans.\ Nature. 2016 Aug 18;536(7616):285-91.\ PMID: 27535533; PMC: PMC5018207\

\ \

\ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ \ The mutational constraint spectrum quantified from variation in 141,456 humans.\ Nature. 2020 May;581(7809):434-443.\ PMID: 32461654; PMC: PMC7334197\

\ \

\ Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\ Gauthier LD, Wang H et al.\ \ A structural variation reference for medical and population genetics.\ Nature. 2020 May;581(7809):444-451.\ PMID: 32461652; PMC: PMC7334194\

\ \

\ Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\ Satterstrom FK, O'Donnell-Luria AH et al.\ \ Transcript expression-aware annotation improves rare variant interpretation.\ Nature. 2020 May;581(7809):452-458.\ PMID: 32461655; PMC: PMC7334198\

\ \ varRep 0 compositeTrack on\ dataVersion Release 2.0.2\ group varRep\ html gnomadCoverage\ longLabel Genome Aggregation Database (gnomAD) - Genome and Exome Sample Coverage\ parent gnomadSuper\ shortLabel gnomAD Coverage\ subGroup1 view Views gAvg=GenomesAverage eAvg=ExomesAverage gRDepth=GenomesReadDepth eRDepth=ExomesReadDepth\ track gnomadCoverage\ type bigWig\ visibility dense\ gnomadExomes gnomAD Exomes Variants bigBed 9 + Genome Aggregation Database (gnomAD) Exome Variants v2.1.1 4 100 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$-$?dataset=gnomad_r2_1&ignore=$

Description

\

\ The Genome Aggregation Database (gnomAD) - Genome and Exome Variants tracks \ show single nucleotide variants (SNVs) and small insertion/deletion variants of <50 nucleotides\ (indels) from 125,748 exomes and 15,708 whole genomes of unrelated individuals, short variant \ release 2.1.1. For more information on the processing pipeline and population annotations, see the following\ blog post and the \ 2.1.1 README.\

\ \

\ There are two tracks making up this data set:\

    \
  1. gnomAD Exome Variants: short variants of 125,748 exomes, release 2.1.1.
    2. \
  2. gnomAD Genome Variants: short variants of 15,708 genomes, release 2.1.1.
    3. \
\

\ \

\ VCF files were downloaded according to the \ gnomAD instructions and\ transformed into one bigBed file per data set, as described in UCSC Methods.\

\ \

Display Conventions and Configuration

\

Display conventions

\

\ By default, a maximum of 50,000 variants can be displayed at a time (before applying the filters\ described below), before the track switches to dense display mode.\

\ \

\ Mouse hover on an item will display many details about each variant, including the affected gene(s),\ the variant type, and annotation (missense, synonymous, etc).\

\ \

\ Clicking on an item will display additional details on the variant, including a population frequency\ table showing allele count in each sub-population.\

\ \

\ Following the conventions on the gnomAD browser, items are shaded according to their Annotation\ type:\ \ \ \ \ \
pLoF
Missense
Synonymous
Other
\

\ \

Label Options

\

\ To maintain consistency with the gnomAD website, variants are by default labeled according\ to their chromosomal start position followed by the reference and alternate alleles,\ for example "chr1-1234-T-CAG". dbSNP rsID's are also available as an additional\ label, if the variant is present in dbSnp.\

\ \

Filtering Options

\

\ Three filters are available for these tracks:\

\ \
    \
  1. FILTER: Used to exclude/include variants that failed Random Forest\ (RF), Inbreeding Coefficient (Inbreeding Coeff), or Allele Count (AC0) filters. The\ PASS option is used to include/exclude variants that pass all of the RF,\ InbreedingCoeff, and AC0 filters, as denoted in the original VCF.\
  2. Annotation type: Used to exclude/include variants that are annotated as\ Probability Loss of Function (pLoF), Missense, Synonymous, or Other, as\ annotated by VEP version 85 (GENCODE v19).\
  3. Variant Type: Used to exclude/include variants according to the type of\ variation, as annotated by VEP v85.\
\ For gnomAD Exome Variants v2.1.1, there is a Non-cancer filter used to exclude/include variants\ from samples of individuals who were not ascertained for having cancer in a cancer study.\

\ As an individual variant can possess multiple FILTER and Variant Type values,\ it is important to select any options of interest (or rather deselect if trying\ to filter out variants from the display).\

\ \ \

UCSC Methods

\

\ Annotations from the Loss-of-function curation results have been added where\ appropriate to variants in both the exomes and genomes data.\

\ \

\ For the full steps used to create the track at UCSC, please see the section\ denoted "gnomAD v2.1.1 update" in the hg19 makedoc.\

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser or the Data Integrator. For automated analysis, the\ data may be queried from our REST API or downloaded as files from our\ download server, subject to the conditions set forth by the\ gnomAD consortium (see below). Please refer to our \ \ mailing list archives for questions or our \ Data Access FAQ \ for more information.

\ \

\ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\

\ \

Credits

\

\ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the ODC Open Database License\ (ODbL) as described here.\

\ \

References

\ \

\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ \ Analysis of protein-coding genetic variation in 60,706 humans.\ Nature. 2016 Aug 18;536(7616):285-91.\ PMID: 27535533; PMC: PMC5018207\

\ \

\ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ \ The mutational constraint spectrum quantified from variation in 141,456 humans.\ Nature. 2020 May;581(7809):434-443.\ PMID: 32461654; PMC: PMC7334197\

\ \

\ Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\ Gauthier LD, Wang H et al.\ \ A structural variation reference for medical and population genetics.\ Nature. 2020 May;581(7809):444-451.\ PMID: 32461652; PMC: PMC7334194\

\ \

\ Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\ Satterstrom FK, O'Donnell-Luria AH et al.\ \ Transcript expression-aware annotation improves rare variant interpretation.\ Nature. 2020 May;581(7809):452-458.\ PMID: 32461655; PMC: PMC7334198\

\ \ varRep 1 bigDataUrl /gbdb/hg19/gnomAD/variants/v2.1.1.exomes.bb\ dataVersion Release 2.1.1\ defaultLabelFields _displayName\ detailsStaticTable Population Frequencies|/gbdb/hg19/gnomAD/variants/v2.1.1.exomes.popTable.txt\ filter.AF 0.0\ filterLabel.AF Minor Allele Frequency Filter\ filterType.AC_non_cancer single\ filterType.FILTER multipleListAnd\ filterType.variation_type multipleListOr\ filterValues.AC_non_cancer Non-Cancer\ filterValues.FILTER PASS,InbreedingCoeff,RF,AC0\ filterValues.annot pLoF,missense,synonymous,other\ filterValues.variation_type 3_prime_UTR_variant,5_prime_UTR_variant,NMD_transcript_variant,TFBS_ablation,TF_binding_site_variant,coding_sequence_variant,frameshift_variant,incomplete_terminal_codon_variant,inframe_deletion,inframe_insertion,intergenic_variant,intron_variant,mature_miRNA_variant,missense_variant,non_coding_transcript_exon_variant,non_coding_transcript_variant,protein_altering_variant,splice_acceptor_variant,splice_donor_variant,splice_region_variant,start_lost,stop_gained,stop_lost,stop_retained_variant,synonymous_variant,transcript_ablation\ filterValuesDefault.AC_non_cancer Non-Cancer\ filterValuesDefault.FILTER PASS\ html gnomadExomesGenomes\ itemRgb on\ labelFields rsId,_displayName\ longLabel Genome Aggregation Database (gnomAD) Exome Variants v2.1.1\ maxItems 50000\ mouseOver Position: $chrom:${chromStart}-${chromEnd} ($ref/$alt); Genes: $genes; Type: $annot; Tag: $FILTER; Allele Frequency: $AF ($AC/$AN)\ parent gnomadSuper\ pennantIcon Updated red ../goldenPath/newsarch.html#032624 "Updated Mar. 26, 2024"\ shortLabel gnomAD Exomes Variants\ skipEmptyFields on\ skipFields _displayName\ track gnomadExomes\ type bigBed 9 +\ url https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$-$?dataset=gnomad_r2_1&ignore=$\ urlLabel View this variant at gnomAD\ visibility squish\ gnomadGenomes gnomAD Genomes Variants bigBed 9 + Genome Aggregation Database (gnomAD) Genome Variants v2.1.1 4 100 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$-$?dataset=gnomad_r2_1&ignore=$

Description

\

\ The Genome Aggregation Database (gnomAD) - Genome and Exome Variants tracks \ show single nucleotide variants (SNVs) and small insertion/deletion variants of <50 nucleotides\ (indels) from 125,748 exomes and 15,708 whole genomes of unrelated individuals, short variant \ release 2.1.1. For more information on the processing pipeline and population annotations, see the following\ blog post and the \ 2.1.1 README.\

\ \

\ There are two tracks making up this data set:\

    \
  1. gnomAD Exome Variants: short variants of 125,748 exomes, release 2.1.1.
    2. \
  2. gnomAD Genome Variants: short variants of 15,708 genomes, release 2.1.1.
    3. \
\

\ \

\ VCF files were downloaded according to the \ gnomAD instructions and\ transformed into one bigBed file per data set, as described in UCSC Methods.\

\ \

Display Conventions and Configuration

\

Display conventions

\

\ By default, a maximum of 50,000 variants can be displayed at a time (before applying the filters\ described below), before the track switches to dense display mode.\

\ \

\ Mouse hover on an item will display many details about each variant, including the affected gene(s),\ the variant type, and annotation (missense, synonymous, etc).\

\ \

\ Clicking on an item will display additional details on the variant, including a population frequency\ table showing allele count in each sub-population.\

\ \

\ Following the conventions on the gnomAD browser, items are shaded according to their Annotation\ type:\ \ \ \ \ \
pLoF
Missense
Synonymous
Other
\

\ \

Label Options

\

\ To maintain consistency with the gnomAD website, variants are by default labeled according\ to their chromosomal start position followed by the reference and alternate alleles,\ for example "chr1-1234-T-CAG". dbSNP rsID's are also available as an additional\ label, if the variant is present in dbSnp.\

\ \

Filtering Options

\

\ Three filters are available for these tracks:\

\ \
    \
  1. FILTER: Used to exclude/include variants that failed Random Forest\ (RF), Inbreeding Coefficient (Inbreeding Coeff), or Allele Count (AC0) filters. The\ PASS option is used to include/exclude variants that pass all of the RF,\ InbreedingCoeff, and AC0 filters, as denoted in the original VCF.\
  2. Annotation type: Used to exclude/include variants that are annotated as\ Probability Loss of Function (pLoF), Missense, Synonymous, or Other, as\ annotated by VEP version 85 (GENCODE v19).\
  3. Variant Type: Used to exclude/include variants according to the type of\ variation, as annotated by VEP v85.\
\ For gnomAD Exome Variants v2.1.1, there is a Non-cancer filter used to exclude/include variants\ from samples of individuals who were not ascertained for having cancer in a cancer study.\

\ As an individual variant can possess multiple FILTER and Variant Type values,\ it is important to select any options of interest (or rather deselect if trying\ to filter out variants from the display).\

\ \ \

UCSC Methods

\

\ Annotations from the Loss-of-function curation results have been added where\ appropriate to variants in both the exomes and genomes data.\

\ \

\ For the full steps used to create the track at UCSC, please see the section\ denoted "gnomAD v2.1.1 update" in the hg19 makedoc.\

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser or the Data Integrator. For automated analysis, the\ data may be queried from our REST API or downloaded as files from our\ download server, subject to the conditions set forth by the\ gnomAD consortium (see below). Please refer to our \ \ mailing list archives for questions or our \ Data Access FAQ \ for more information.

\ \

\ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\

\ \

Credits

\

\ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the ODC Open Database License\ (ODbL) as described here.\

\ \

References

\ \

\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ \ Analysis of protein-coding genetic variation in 60,706 humans.\ Nature. 2016 Aug 18;536(7616):285-91.\ PMID: 27535533; PMC: PMC5018207\

\ \

\ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ \ The mutational constraint spectrum quantified from variation in 141,456 humans.\ Nature. 2020 May;581(7809):434-443.\ PMID: 32461654; PMC: PMC7334197\

\ \

\ Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\ Gauthier LD, Wang H et al.\ \ A structural variation reference for medical and population genetics.\ Nature. 2020 May;581(7809):444-451.\ PMID: 32461652; PMC: PMC7334194\

\ \

\ Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\ Satterstrom FK, O'Donnell-Luria AH et al.\ \ Transcript expression-aware annotation improves rare variant interpretation.\ Nature. 2020 May;581(7809):452-458.\ PMID: 32461655; PMC: PMC7334198\

\ \ varRep 1 bigDataUrl /gbdb/hg19/gnomAD/variants/v2.1.1.genomes.bb\ dataVersion Release 2.1.1\ defaultLabelFields _displayName\ detailsStaticTable Population Frequencies|/gbdb/hg19/gnomAD/variants/v2.1.1.genomes.popTable.txt\ filter.AF 0.0\ filterLabel.AF Minor Allele Frequency Filter\ filterType.FILTER multipleListAnd\ filterType.annot multiple\ filterType.variation_type multipleListOr\ filterValues.FILTER PASS,InbreedingCoeff,RF,AC0\ filterValues.annot pLoF,missense,synonymous,other\ filterValues.variation_type 3_prime_UTR_variant,5_prime_UTR_variant,NMD_transcript_variant,TFBS_ablation,TF_binding_site_variant,coding_sequence_variant,frameshift_variant,incomplete_terminal_codon_variant,inframe_deletion,inframe_insertion,intergenic_variant,intron_variant,mature_miRNA_variant,missense_variant,non_coding_transcript_exon_variant,non_coding_transcript_variant,protein_altering_variant,splice_acceptor_variant,splice_donor_variant,splice_region_variant,start_lost,stop_gained,stop_lost,stop_retained_variant,synonymous_variant,transcript_ablation\ filterValuesDefault.FILTER PASS\ html gnomadExomesGenomes\ itemRgb on\ labelFields _displayName,rsId\ longLabel Genome Aggregation Database (gnomAD) Genome Variants v2.1.1\ maxItems 50000\ mouseOver Position: $chrom:${chromStart}-${chromEnd} ($ref/$alt); Genes: $genes; Type: $annot; Tag: $FILTER; Allele Frequency: $AF ($AC/$AN)\ parent gnomadSuper\ sepFields AC_afr\ shortLabel gnomAD Genomes Variants\ track gnomadGenomes\ type bigBed 9 +\ url https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$-$?dataset=gnomad_r2_1&ignore=$\ urlLabel View this variant at gnomAD\ visibility squish\ gnomadPext gnomAD pext bigWig 0 1 gnomAD Proportion Expression Across Transcript Scores (pext) 2 100 0 0 0 127 127 127 0 0 0

Description

\

\ The gnomAD Proportion Expression Across Transcript Scores (pext) (pext) track set displays isoform expression levels across 53 \ tissues, based on 11,706 tissue samples from the Genotype Tissue Expression (GTEx) v7 dataset.\

\ \

\ The gnomAD pext tracks provide a comprehensive view of the expression of exons across a \ gene using the proportion expression across transcripts, or pext metric, a \ transcript-level annotation metric that quantifies isoform expression for variants. This metric \ was calculated by annotating each variant with the expression of all possible consequences across \ all transcripts for each tissue and normalizing the expression of the annotation to the total \ expression of the gene, which can be interpreted as a measure of the proportion of the total \ transcriptional output from a gene that would be affected by the variant annotation in question.\

\ \

\ Each of the subtracks shows the pext metric for a specific tissue, except the gnomAD \ pext Mean Proportion subtrack that shows the average pext metrics calculated from the 53 GTEx \ tissues.\

\ \

Display Conventions and Configuration

\ \

\ The pext graphs display the mean expression at each base position for protein-coding (CDS) regions.\ While UTRs do have expression in transcriptome datasets, this information is not included\ for the visualization. The details page shows calculated sample percentages for the range of\ sequence within the browser window.\

\ \ \

Methods

\

\ The pext values are derived from isoform quantifications using the RSEM tool. Detailed information about\ development and commands to create these files can be found here. Pext values were downloaded\ from the gnomAD website \ and transformed into bigWigs, one per tissue. For the full list of UCSC specific steps, please\ see the "gnomAD PEXT scores" section of the\ \ hg19 makedoc from our GitHub repository.\

\ \

\ Note that isoform quantification tools can be imprecise, especially for longer genes with many\ annotated isoforms. Regions with low pext values might be enriched for annotation errors (ie. there\ may be edge cases for which an exon that is established to be critical for gene function may appear\ unexpressed with pext). Also note that the GTEx dataset is postmortem adult tissue, and thus\ the possibility that an exon may be development-specific or may be expressed in tissues not\ represented in GTEx can not be dismissed.\

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API.\ The data can also be found directly from the gnomAD downloads page.\

\ \

\ Please refer to our\ mailing list archives\ for questions and example queries, or our\ Data Access FAQ\ for more information.

\ \

\ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\

\ \

Credits

\

\ Thanks to the Genome Aggregation\ Database Consortium for making these data available, Nick Watts for developing this track on \ the gnomAD Browser, and Anna Benet-Pagès and Chris Lee for building this track on the UCSC Genome \ Browser. The data are released under the ODC Open Database License\ (ODbL) as described here.\

\ \

References

\ \

\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ \ Analysis of protein-coding genetic variation in 60,706 humans.\ Nature. 2016 Aug 18;536(7616):285-91.\ PMID: 27535533; PMC: PMC5018207\

\ \

\ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ \ The mutational constraint spectrum quantified from variation in 141,456 humans.\ Nature. 2020 May;581(7809):434-443.\ PMID: 32461654; PMC: PMC7334197\

\ \

\ Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\ Gauthier LD, Wang H et al.\ \ A structural variation reference for medical and population genetics.\ Nature. 2020 May;581(7809):444-451.\ PMID: 32461652; PMC: PMC7334194\

\ \

\ Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\ Satterstrom FK, O'Donnell-Luria AH et al.\ \ Transcript expression-aware annotation improves rare variant interpretation.\ Nature. 2020 May;581(7809):452-458.\ PMID: 32461655; PMC: PMC7334198\

\ \ varRep 0 compositeTrack on\ dataVersion Release 2.1.1 (March 6, 2019)\ html gnomadPext\ longLabel gnomAD Proportion Expression Across Transcript Scores (pext)\ maxHeightPixels 100:16:8\ parent gnomadSuper\ shortLabel gnomAD pext\ track gnomadPext\ type bigWig 0 1\ viewLimits 0:1\ visibility full\ gnomadStructuralVariants gnomAD Structural Variants bigBed 9 + Genome Aggregation Database (gnomAD) - Structural Variants 1 100 0 0 0 127 127 127 0 0 0

Description

\

\ The Genome Aggregation Database (gnomAD) - Structural Variants track set shows structural variants calls (>=50 nucleotides) from the gnomAD v2.1\ release on 10,847 unrelated genomes. It mostly (but not entirely) overlaps with the genome set used\ for the gnomAD short variant release. For more information see the following blog post, \ \ Structural variants in gnomAD.

\

\ There are three subtracks in this track set:\

    \
  1. All SV's: The full set of variant annotations from all 10,847 samples.
    2. \
  2. Control Only SV's: Only samples from individuals not selected as a case in a\ case/control study of common disease (5,192 samples).
    3. \
  3. Non-neuro SV's: Only samples from individuals not selected as having a neurological\ condition in a case/control study (8,342 samples).
    4. \
\

\ \

Display Conventions and Configuration

\ \

\ Items in all subtracks follow the same conventions: items are shaded according to variant type,\ mouseover on items indicates affected protein-coding genes, size of the variant (which may differ\ from the chromosomal coordinates in cases like insertions), variant type (insertion, duplication,\ etc), Allele Count, Allele Number, and Allele Frequency. When more than 2 genes are affected by a\ variant, the full list can be obtained by clicking on the item and reading the details page. A short\ summary of the 3 datasets is available in the below table:

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Variant TypeAllControlsNon-neuro
Breakend (BND)526043789144952
Complex (CPX)477831294167
Translocation (CTX)845
Deletion (DEL)169635116401145978
Duplication (DUP)495713622343916
Insertion (INS)1090257847595658
Inversion (INV)748492667
Multi-Allele CNV (MCNV)110811081108
\ \

\ Detailed information on the CNV color code is described \ here. All tracks can be \ filtered according to the size of the variant and variant type, using the track Configure\ options.\

\ \

Methods

\

\ Bed files were obtained from the gnomAD Google Storage bucket:\ \ 

\
gsutil cp gs://gnomad-public/papers/2019-sv/gnomad_v2.1_sv.*.bed*\
\ \ These data were then transformed into bigBed tracks. For the full list of commands used to make this\ track please see the "gnomAD Structural Variants v2.1" section of the\ makedoc.

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all \ others, is available via our API. However, for bulk \ processing, it is recommended to download the dataset. The genome annotation is stored in a bigBed \ file that can be downloaded from the\ download server.\ The exact filenames can be found in the track configuration file. Annotations can be converted to\ ASCII text by our tool bigBedToBed which can be compiled from the source code or\ downloaded as a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found\ here. The tool can\ also be used to obtain only features within a given range, for example:

\ \ 
\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/gnomAD/structuralVariants/gnomad_v2.1_sv.sites.bb -chrom=chr6 -start=0 -end=1000000 stdout\
\ \

\ Please refer to our\ mailing list archives\ for questions and example queries, or our\ Data Access FAQ\ for more information.

\ \

\ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\

\ \

Credits

\

\ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the ODC Open Database License\ (ODbL) as described here.\

\ \ \

References

\ \

\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ \ Analysis of protein-coding genetic variation in 60,706 humans.\ Nature. 2016 Aug 18;536(7616):285-91.\ PMID: 27535533; PMC: PMC5018207\

\ \

\ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ \ The mutational constraint spectrum quantified from variation in 141,456 humans.\ Nature. 2020 May;581(7809):434-443.\ PMID: 32461654; PMC: PMC7334197\

\ \

\ Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\ Gauthier LD, Wang H et al.\ \ A structural variation reference for medical and population genetics.\ Nature. 2020 May;581(7809):444-451.\ PMID: 32461652; PMC: PMC7334194\

\

\ Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\ Satterstrom FK, O'Donnell-Luria AH et al.\ \ Transcript expression-aware annotation improves rare variant interpretation.\ Nature. 2020 May;581(7809):452-458.\ PMID: 32461655; PMC: PMC7334198\

\ \ varRep 1 compositeTrack on\ dataVersion Release 2.1\ group varRep\ html gnomadSv\ longLabel Genome Aggregation Database (gnomAD) - Structural Variants\ noParentConfig on\ parent gnomadSuper\ shortLabel gnomAD Structural Variants\ track gnomadStructuralVariants\ type bigBed 9 +\ visibility dense\ grcIncidentDb GRC Incident bigBed 4 + GRC Incident Database 0 100 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/issue_detail.cgi?id=$$

Description

\

\ This track shows locations in the human assembly where assembly\ problems have been noted or resolved, as reported by the\ Genome Reference Consortium (GRC). \

\

\ If you would like to report an assembly problem, please use the GRC\ issue reporting system.\

\ \

Methods

\

\ Data for this track are extracted from the GRC\ incident database from the specific species *_issues.gff3 file.\ The track is synchronized once daily to incorporate new updates. \

\ \

Credits

\

The data and presentation of this track were prepared by\ Hiram Clawson.\

\ map 1 group map\ longLabel GRC Incident Database\ shortLabel GRC Incident\ track grcIncidentDb\ type bigBed 4 +\ url https://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/issue_detail.cgi?id=$$\ urlLabel GRC Incident:\ visibility hide\ ctgPos2 GRC Map Contigs ctgPos Genome Reference Consortium Map Contigs 0 100 0 0 0 127 127 127 0 0 0 none \

Description

\

\ This track represents the names of the assembled super contigs as\ established by the\ Genome Reference Consortium.\ The contigs in this track are identical to those in the\ Map Contigs track, \ the difference being the the contigs in this track\ track are named according to GRC.\

\ Data for this track were obtained from localId2acc files located at\ NCBI.

\ map 0 group map\ longLabel Genome Reference Consortium Map Contigs\ shortLabel GRC Map Contigs\ track ctgPos2\ type ctgPos\ url none\ visibility hide\ gtexEqtlCluster GTEx Combined eQTL bed 5 + Combined Expression QTLs from 44 Tissues from GTEx (midpoint release, V6) 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This track shows genetic variants likely affecting proximal gene expression in 44 human tissues \ from the\ Genotype-Tissue Expression (GTEx) V6 \ data release. \ The data items displayed are gene expression quantitative trait loci within 1MB of \ gene transcription start sites (cis-eQTLs), significantly associated with gene expression and in \ the credible set of variants for the gene at a high confidence level (95%).\ Each eQTL annotation includes the significance of the association, effect size on gene expression, \ and the probability the eQTL is a member of the 95% credible set (the set containing all causal variants\ for the gene locus, at 95% confidence level).\

\ \

Display Conventions

\

\ The eQTL item color indicates the effect size attributed to the eQTL:\

    \ \ \ \ \ \ \
    red  high positive
    light red  moderate positive
    light blue  moderate negative
    blue  high negative
    mixed  positive and negative effect in combined eQTL
    \
\ Effect size is the regression slope, computed from the effect of the alternative allele vs. \ the reference in FPKM units, based on quantile normalized expression tables.\ For display purposes, An arbitrary cutoff of +- 2.0 FPKM defines high effect size.\

\

Combined eQTL track

\

\ Gene/variant pairs occurring in multiple tissues are combined into a single item in the display. \ The item label shows the number of tissues where the eQTL was identified, or the tissue name and\ the GTEx-convention tissue color if the eQTL was identified solely in one tissue.\ Mouseover lists all tissues affected and the effect size.\ The item color reflects the largest effect size in any tissue.\

\ Track configuration supports filtering by gene, effect size, or probability. \ Tissues can be selected via checkboxes or from the UCSC GTEx Body Map graphic.\
\ GTEx Combined eQTL Track Settings: hg19.\

\

\

Tissue eQTL tracks

\

\ This track is a composite track containing 44 subtracks representing the GTEx eQTL tissues.\ Each subtrack contains all GTEx/CAVIAR eQTLs identified for that tissue. \
\ GTEx 44 Tissues eQTL Track Settings: hg19.\

\ \

Methods

\

\ Laboratory and RNA-seq analysis methods for GTEx V6 are summarized in the \ GTEx Gene Track description page.\

\

\ Cis-eQTL's were identified from GTEx RNA-seq and genotype data (variants with minor allele \ frequency >= 1%) in 44 tissues (those with sample size >=70) using \ the FastQTL mapper at 5% FDR threshold, \ by the GTEx Laboratory, Data Analysis and Coordinating Center (LDACC), as part of the GTEx project v6p analysis. \ These cis-eQTL's were then analyzed together with genome variation information (LD) using the \ CAVIAR statistical framework\ to quantify the probability a variant is causal, at the Eskin lab at UCLA, as part of GTEx downstream \ analysis.\ The UCSC track was created using the CAVIAR 95% credible set, with significance p-values and \ effect sizes from the LDACC analysis.\

\

\ Raw data for these analyses are available from dbGaP (phs000424.v6.p1).\

\ \

Credits

\ Thanks to GTEx investigators and analysts -- particularly \ Farhad Hormozdiari\ (currently at the \ Price lab, Harvard), \ the Eskin lab at UCLA,\ the GTEx Laboratory, Data Analysis and Coordinating Center and analysts and portal team for providing this data, \ and to Christopher Brown (U Penn) ,\ for input on design of the track.\ \

References

\

\

\ GTEx Consortium., Laboratory, Data Analysis &Coordinating Center (LDACC)—Analysis Working\ Group., Statistical Methods groups—Analysis Working Group., Enhancing GTEx (eGTEx) groups.,\ NIH Common Fund., NIH/NCI., NIH/NHGRI., NIH/NIMH., NIH/NIDA., Biospecimen Collection Source\ Site—NDRI. et al.\ \ Genetic effects on gene expression across human tissues.\ Nature. 2017 Oct 11;550(7675):204-213.\ PMID: 29022597\

\

\ Ongen H, Buil A, Brown AA, Dermitzakis ET, Delaneau O.\ \ Fast and efficient QTL mapper for thousands of molecular phenotypes.\ Bioinformatics. 2016 May 15;32(10):1479-85.\ PMID: 26708335; PMC: PMC4866519\

\

\ Hormozdiari F, Kostem E, Kang EY, Pasaniuc B, Eskin E.\ \ Identifying causal variants at loci with multiple signals of association.\ Genetics. 2014 Oct;198(2):497-508.\ PMID: 25104515; PMC: PMC4196608\

\

\ GTEx Consortium.\ \ The Genotype-Tissue Expression (GTEx) project.\ Nat Genet. 2013 Jun;45(6):580-5.\ PMID: 23715323; PMC: PMC4010069\

\

\ \ GTEx Portal Documentation\

\ regulation 1 dataVersion GTEx Analysis V6p (https://www.gtexportal.org/home/datasets)\ exonNumbers off\ group regulation\ html gtexEqtl\ longLabel Combined Expression QTLs from 44 Tissues from GTEx (midpoint release, V6)\ shortLabel GTEx Combined eQTL\ track gtexEqtlCluster\ type bed 5 +\ gtexGene GTEx Gene bed 6 + Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors) 0 100 0 0 0 127 127 127 1 0 0

Description

\

\ The\ NIH Genotype-Tissue Expression (GTEx) project\ was created to establish a sample and data resource for studies on the relationship between \ genetic variation and gene expression in multiple human tissues. \ This track shows median gene expression levels in 51 tissues and 2 cell lines, \ based on RNA-seq data from the GTEx midpoint milestone data release (V6, October 2015).\ This release is based on data from 8555 tissue samples obtained from 570 adult post-mortem individuals.

\ \

Display Conventions

\

\ In Full and Pack display modes, expression for each gene is represented by a colored bargraph,\ where the height of each bar represents the median expression level across all samples for a \ tissue, and the bar color indicates the tissue.\ Tissue colors were assigned to conform to the GTEx Consortium publication conventions.\
     
\ The bargraph display has the same width and tissue order for all genes.\ Mouse hover over a bar will show the tissue and median expression level.\ The Squish display mode draws a rectangle for each gene, colored to indicate the tissue\ with highest expression level if it contributes more than 10% to the overall expression\ (and colored black if no tissue predominates).\ In Dense mode, the darkness of the grayscale rectangle displayed for the gene reflects the total\ median expression level across all tissues.

\

\ The GTEx transcript model used to quantify expression level is displayed below the graph,\ colored to indicate the transcript class \ (coding, \ noncoding, \ pseudogene, \ problem), \ following GENCODE conventions.\

\

\ Click-through on a graph displays a boxplot of expression level quartiles with outliers, \ per tissue, along with a link to the corresponding gene page on the GTEx Portal.

\ The track configuration page provides controls to limit the genes and tissues displayed,\ and to select raw or log transformed expression level display.

\ \

Methods

\ Tissue samples were obtained using the GTEx standard operating procedures for informed consent\ and tissue collection, in conjunction with the \ \ National Cancer Institute Biorepositories and Biospecimen.\ All tissue specimens were reviewed by pathologists to characterize and\ verify organ source.\ Images from stained tissue samples can be viewed via the \ \ NCI histopathology viewer.\ The Qiagen PAXgene non-formalin tissue preservation product was used to stabilize \ tissue specimens without cross-linking biomolecules.

\

\ RNA-seq was performed by the GTEx Laboratory, Data Analysis and Coordinating Center \ (LDACC) at the Broad Institute.\ The Illumina TruSeq protocol was used to create an unstranded polyA+ library sequenced\ on the Illumina HiSeq 2000 platform to produce 76-bp paired end reads at a depth \ averaging 50M aligned reads per sample.\ Sequence reads were aligned to the hg19/GRCh37 human genome using Tophat v1.4.1 \ assisted by the GENCODE v19 transcriptome definition. \ Gene annotations were produced by taking the union of the GENCODE exons for each gene.\ Gene expression levels in RPKM were called via the RNA-SeQC tool, after filtering for \ unique mapping, proper pairing, and exon overlap.\ For further method details, see the \ \ GTEx Portal Documentation page.\

\ UCSC obtained the gene-level expression files, gene annotations and sample metadata from the \ GTEx Portal Download page.\ Median expression level in RPKM was computed per gene/per tissue.

\ \

Subject and Sample Characteristics

\

\ The scientific goal of the GTEx project required that the donors and their biospecimen \ present with no evidence of disease. \ The tissue types collected were chosen based on their clinical significance, logistical \ feasibility and their relevance to the scientific goal of the project and the \ research community. \ Postmortem samples were collected from non-diseased donors with ages ranging from 20 to 79. 34.4% of donors were female and 65.6% male. \

\

\

\

\ Additional summary plots of GTEx sample characteristics are available at the \ \ GTEx Portal Tissue Summary page.

\ \ \

Data Access

\

\ The raw data for the GTEx Gene expression track can be accessed interactively through the \ \ Table Browser or Data Integrator. Metadata can be \ found in the connected tables below.\

    \
  • \ gtexGeneModel describes the gene names and coordinates in genePred format.
    • \
  • \ hgFixed.gtexTissue lists each of the 53 tissues in alphabetical order,\ corresponding to the comma separated expression values in gtexGene.
    • \
  • \ hgFixed.gtexSampleData has RPKM expression scores for each individual gene-sample \ data point, connected to gtexSample.
    • \
  • \ hgFixed.gtexSample contains metadata about sample time, collection site,\ and tissue, connected to the donor field in the gtexDonor table.
    • \
  • \ hgFixed.gtexDonor has anonymized information on the tissue donor.

\

\ For automated analysis and downloads, the track data files can be downloaded from \ our downloads server\ or the JSON API.\ Individual regions or the whole genome annotation can be accessed as text using our utility\ bigBedToBed. Instructions for downloading the utility can be found \ here. \ That utility can also be used to obtain features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/gtex/gtexTranscExpr.bb -chrom=chr21\ -start=0 -end=100000000 stdout

\

\ Data can also be obtained directly from GTEx at the following link:\ \ https://gtexportal.org/home/datasets

\ \

Credits

\

\ Statistical analysis and data interpretation was performed by The GTEx Consortium Analysis \ Working Group. \ Data was provided by the GTEx LDACC at The Broad Institute of MIT and Harvard.

\ \

References

\

\ GTEx Consortium.\ \ The Genotype-Tissue Expression (GTEx) project.\ Nat Genet. 2013 Jun;45(6):580-5.\ PMID: 23715323; \ PMC: PMC4010069\

\ \

\ Carithers LJ, Ardlie K, Barcus M, Branton PA, Britton A, Buia SA, Compton CC, DeLuca DS, Peter-Demchok J, Gelfand ET et al.\ \ A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project.\ Biopreserv Biobank. 2015 Oct;13(5):311-9.\ PMID: 26484571; \ PMC: PMC4675181

\ \ Melé M, Ferreira PG, Reverter F, DeLuca DS, Monlong J, Sammeth M, Young TR, Goldmann JM,\ Pervouchine DD, Sullivan TJ et al.\ \ Human genomics. The human transcriptome across tissues and individuals.\ Science. 2015 May 8;348(6235):660-5.\ PMID: 25954002; PMC: PMC4547472

\ \

\ DeLuca DS, Levin JZ, Sivachenko A, Fennell T, Nazaire MD, Williams C, Reich M, Winckler W, Getz G.\ \ RNA-SeQC: RNA-seq metrics for quality control and process optimization.\ Bioinformatics. 2012 Jun 1;28(11):1530-2.\ PMID: 22539670; PMC: PMC3356847

\ \ expression 1 group expression\ html gtexGeneExpr\ longLabel Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors)\ maxItems 200\ shortLabel GTEx Gene\ spectrum on\ track gtexGene\ type bed 6 +\ visibility hide\ gtexEqtlTissue GTEx Tissue eQTL bed 9 + Expression QTLs in 44 tissues from GTEx (midpoint release, V6) 0 100 0 0 0 127 127 127 0 0 0 https://www.gtexportal.org/home/bubbleHeatmapPage/$$

Description

\

\ This track shows genetic variants likely affecting proximal gene expression in 44 human tissues \ from the\ Genotype-Tissue Expression (GTEx) V6 \ data release. \ The data items displayed are gene expression quantitative trait loci within 1MB of \ gene transcription start sites (cis-eQTLs), significantly associated with gene expression and in \ the credible set of variants for the gene at a high confidence level (95%).\ Each eQTL annotation includes the significance of the association, effect size on gene expression, \ and the probability the eQTL is a member of the 95% credible set (the set containing all causal variants\ for the gene locus, at 95% confidence level).\

\ \

Display Conventions

\

\ The eQTL item color indicates the effect size attributed to the eQTL:\

    \ \ \ \ \ \ \
    red  high positive
    light red  moderate positive
    light blue  moderate negative
    blue  high negative
    mixed  positive and negative effect in combined eQTL
    \
\ Effect size is the regression slope, computed from the effect of the alternative allele vs. \ the reference in FPKM units, based on quantile normalized expression tables.\ For display purposes, An arbitrary cutoff of +- 2.0 FPKM defines high effect size.\

\

Combined eQTL track

\

\ Gene/variant pairs occurring in multiple tissues are combined into a single item in the display. \ The item label shows the number of tissues where the eQTL was identified, or the tissue name and\ the GTEx-convention tissue color if the eQTL was identified solely in one tissue.\ Mouseover lists all tissues affected and the effect size.\ The item color reflects the largest effect size in any tissue.\

\ Track configuration supports filtering by gene, effect size, or probability. \ Tissues can be selected via checkboxes or from the UCSC GTEx Body Map graphic.\
\ GTEx Combined eQTL Track Settings: hg19.\

\

\

Tissue eQTL tracks

\

\ This track is a composite track containing 44 subtracks representing the GTEx eQTL tissues.\ Each subtrack contains all GTEx/CAVIAR eQTLs identified for that tissue. \
\ GTEx 44 Tissues eQTL Track Settings: hg19.\

\ \

Methods

\

\ Laboratory and RNA-seq analysis methods for GTEx V6 are summarized in the \ GTEx Gene Track description page.\

\

\ Cis-eQTL's were identified from GTEx RNA-seq and genotype data (variants with minor allele \ frequency >= 1%) in 44 tissues (those with sample size >=70) using \ the FastQTL mapper at 5% FDR threshold, \ by the GTEx Laboratory, Data Analysis and Coordinating Center (LDACC), as part of the GTEx project v6p analysis. \ These cis-eQTL's were then analyzed together with genome variation information (LD) using the \ CAVIAR statistical framework\ to quantify the probability a variant is causal, at the Eskin lab at UCLA, as part of GTEx downstream \ analysis.\ The UCSC track was created using the CAVIAR 95% credible set, with significance p-values and \ effect sizes from the LDACC analysis.\

\

\ Raw data for these analyses are available from dbGaP (phs000424.v6.p1).\

\ \

Credits

\ Thanks to GTEx investigators and analysts -- particularly \ Farhad Hormozdiari\ (currently at the \ Price lab, Harvard), \ the Eskin lab at UCLA,\ the GTEx Laboratory, Data Analysis and Coordinating Center and analysts and portal team for providing this data, \ and to Christopher Brown (U Penn) ,\ for input on design of the track.\ \

References

\

\

\ GTEx Consortium., Laboratory, Data Analysis &Coordinating Center (LDACC)—Analysis Working\ Group., Statistical Methods groups—Analysis Working Group., Enhancing GTEx (eGTEx) groups.,\ NIH Common Fund., NIH/NCI., NIH/NHGRI., NIH/NIMH., NIH/NIDA., Biospecimen Collection Source\ Site—NDRI. et al.\ \ Genetic effects on gene expression across human tissues.\ Nature. 2017 Oct 11;550(7675):204-213.\ PMID: 29022597\

\

\ Ongen H, Buil A, Brown AA, Dermitzakis ET, Delaneau O.\ \ Fast and efficient QTL mapper for thousands of molecular phenotypes.\ Bioinformatics. 2016 May 15;32(10):1479-85.\ PMID: 26708335; PMC: PMC4866519\

\

\ Hormozdiari F, Kostem E, Kang EY, Pasaniuc B, Eskin E.\ \ Identifying causal variants at loci with multiple signals of association.\ Genetics. 2014 Oct;198(2):497-508.\ PMID: 25104515; PMC: PMC4196608\

\

\ GTEx Consortium.\ \ The Genotype-Tissue Expression (GTEx) project.\ Nat Genet. 2013 Jun;45(6):580-5.\ PMID: 23715323; PMC: PMC4010069\

\

\ \ GTEx Portal Documentation\

\ regulation 1 allButtonPair on\ altColor 0,0,0\ bedNameLabel Variant/Gene\ causalProbFilter 0:1.0\ causalProbFilterLimits 0:1.0\ compositeTrack on\ darkerLabels on\ dataVersion GTEx Analysis V6p (https://www.gtexportal.org/home/datasets)\ dragAndDrop subTracks\ effectSizeFilter -9265.0:15363.0\ effectSizeFilterByRange on\ effectSizeFilterLimits -9265.0:15363.0\ exonNumbers off\ group regulation\ html gtexEqtl\ itemRgb on\ longLabel Expression QTLs in 44 tissues from GTEx (midpoint release, V6)\ maxItems 200\ noScoreFilter on\ shortLabel GTEx Tissue eQTL\ showSubtrackColorOnUi on\ track gtexEqtlTissue\ type bed 9 +\ url https://www.gtexportal.org/home/bubbleHeatmapPage/$$\ urlLabel GTEx portal eQTL visualizer:\ gtexTranscExpr GTEx Transcript bigBarChart Transcript Expression in 53 tissues from GTEx RNA-seq of 8555 samples/570 donors 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ The\ NIH Genotype-Tissue Expression (GTEx)\ project was created to establish a sample and data resource for studies on the relationship\ between genetic variation and gene expression in multiple human tissues. \ This track displays median transcript expression levels in 53 tissues, based on\ RNA-seq data from the GTEx midpoint milestone data release (V6, October 2015).\ To view the GTEx tissues in anatomical context, see the \ GTEx Body Map.\

\

\ Data for this track were computed at UCSC from GTEx RNA-seq sequence data using the\ Toil\ pipeline running the kallisto transcript-level quantification tool.

\ \

Display Conventions

\

\ In Full and Pack display modes, expression for each transcript is represented by a colored \ bar chart, where the height of each bar represents the median expression level across all \ samples for a tissue, and the bar color indicates the tissue.\

\

\ The bar chart display has the same width and tissue order for all transcripts.\ Mouse hover over a bar will show the tissue and median expression level.\ The Squish display mode draws a rectangle for each gene, colored to indicate the tissue\ with highest expression level if it contributes more than 10% to the overall expression\ (and colored black if no tissue predominates).\ In Dense mode, the darkness of the grayscale rectangle displayed for the transcript reflects \ the total median expression level across all tissues.

\

\ Click-through on a graph displays a boxplot of expression level quartiles with outliers, \ per tissue.

\ \

Methods

\

\ Tissue samples were obtained using the GTEx standard operating procedures for informed consent\ and tissue collection, in conjunction with the \ \ National Cancer Institute Biorepositories and Biospecimen.\ All tissue specimens were reviewed by pathologists to characterize and\ verify organ source.\ Images from stained tissue samples can be viewed via the \ \ NCI histopathology viewer.\ The Qiagen PAXgene non-formalin tissue preservation product was used to stabilize \ tissue specimens without cross-linking biomolecules.

\

\ RNA-seq was performed by the GTEx Laboratory, Data Analysis and Coordinating Center \ (LDACC) at the Broad Institute.\ The Illumina TruSeq protocol was used to create an unstranded polyA+ library sequenced\ on the Illumina HiSeq 2000 platform to produce 76-bp paired end reads at a depth \ averaging 50M aligned reads per sample.

\

\ Sequence reads for this track were quantified to the hg38/GRCh38 human genome using kallisto\ assisted by the GENCODE v23 transcriptome definition. Read quantification was performed at UCSC\ by the Computational Genomics lab, using the Toil pipeline. The resulting kallisto files were\ combined to generate a transcript per million (TPM) expression matrix using the UCSC tool,\ kallistoToMatrix. Average TPM expression values for each tissue were calculated and \ used to generate a bed6+5 file that is the base of the track. This was done using the UCSC\ tool, expMatrixToBarchartBed. The bed track was then converted to a bigBed file using the \ UCSC tool, bedToBigBed.

\

\ The data in the hg19/GRCh37 version of this track was generated by converting the\ coordinates from the hg38/GRCh38 track data.\ Of the 189,615 BED entries from the original hg38 track, 176,220 were mapped over by transcript\ name to hg19 using wgEncodeGencodeCompV24lift37 (~93% coverage).

\ \

Subject and Sample Characteristics

\

\ The scientific goal of the GTEx project required that the donors and their biospecimen \ present with no evidence of disease. The tissue types collected were chosen based on their \ clinical significance, logistical feasibility and their relevance to the scientific goal \ of the project and the research community. Postmortem samples were collected from \ non-diseased donors with ages ranging from 20 to 79. 34.4% of donors were female and\ 65.6% male. \

\

\

\

\ Additional summary plots of GTEx sample characteristics are available at the \ \ GTEx Portal Tissue Summary page.

\ \

Credits

\

\ Samples were collected by the GTEx Consortium.\ RNA-seq was performed by the GTEx Laboratory, Data Analysis and Coordinating Center \ (LDACC) at the Broad Institute.\ John Vivian, Melissa Cline, and Benedict Paten of the UCSC Computational Genomics lab were\ responsible for the sequence read quantification used to produce this track. Kate Rosenbloom \ and Chris Eisenhart of the UCSC Genome Browser group were responsible for data file\ post-processing and track configuration.

\ \

References

\

\ J. Vivian et al., \ \ Rapid and efficient analysis of 20,000 RNA-seq samples with Toil\ bioRxiv bioRxiv, vol. 2, p. 62497, 2016.

\

\ GTEx Consortium.\ \ The Genotype-Tissue Expression (GTEx) project.\ Nat Genet. 2013 Jun;45(6):580-5.\ PMID: 23715323; \ PMC: PMC4010069

\ \

\ Carithers LJ, Ardlie K, Barcus M, Branton PA, Britton A, Buia SA, Compton CC, DeLuca DS, Peter-Demchok J, Gelfand ET et al.\ \ A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project.\ Biopreserv Biobank. 2015 Oct;13(5):311-9.\ PMID: 26484571; \ PMC: PMC4675181

\ \

\ Melé M, Ferreira PG, Reverter F, DeLuca DS, Monlong J, Sammeth M, Young TR, Goldmann JM,\ Pervouchine DD, Sullivan TJ et al.\ \ Human genomics. The human transcriptome across tissues and individuals.\ Science. 2015 May 8;348(6235):660-5.\ PMID: 25954002; PMC: PMC4547472

\ \

\ DeLuca DS, Levin JZ, Sivachenko A, Fennell T, Nazaire MD, Williams C, Reich M, Winckler W, Getz G.\ \ RNA-SeQC: RNA-seq metrics for quality control and process optimization.\ Bioinformatics. 2012 Jun 1;28(11):1530-2.\ PMID: 22539670; PMC: PMC3356847

\ \ expression 1 barChartBars Adipose-Subcutaneous Adipose-Visceral_(Omentum) Adrenal_Gland Artery-Aorta Artery-Coronary Artery-Tibial Bladder Brain-Amygdala Brain-Anterior_cingulate_cortex_(BA24) Brain-Caudate_(basal_ganglia) Brain-Cerebellar_Hemisphere Brain-Cerebellum Brain-Cortex Brain-Frontal_Cortex_(BA9) Brain-Hippocampus Brain-Hypothalamus Brain-Nucleus_accumbens_(basal_ganglia) Brain-Putamen_(basal_ganglia) Brain-Spinal_cord_(cervical_c-1) Brain-Substantia_nigra Breast-Mammary_Tissue Cells-EBV-transformed_lymphocytes Cells-Transformed_fibroblasts Cervix-Ectocervix Cervix-Endocervix Colon-Sigmoid Colon-Transverse Esophagus-Gastroesophageal_Junction Esophagus-Mucosa Esophagus-Muscularis Fallopian_Tube Heart-Atrial_Appendage Heart-Left_Ventricle Kidney-Cortex Liver Lung Minor_Salivary_Gland Muscle-Skeletal Nerve-Tibial Ovary Pancreas Pituitary Prostate Skin-Not_Sun_Exposed_(Suprapubic) Skin-Sun_Exposed_(Lower_leg) Small_Intestine-Terminal_Ileum Spleen Stomach Testis Thyroid Uterus Vagina Whole_Blood\ barChartColors \\#FFA54F #EE9A00 #8FBC8F #8B1C62 #EE6A50 #FF0000 #CDB79E #EEEE00 \\#EEEE00 #EEEE00 #EEEE00 #EEEE00 #EEEE00 #EEEE00 #EEEE00 #EEEE00 \\#EEEE00 #EEEE00 #EEEE00 #EEEE00 #00CDCD #EE82EE #9AC0CD #EED5D2 \\#EED5D2 #CDB79E #EEC591 #8B7355 #8B7355 #CDAA7D #EED5D2 #B452CD \\#7A378B #CDB79E #CDB79E #9ACD32 #CDB79E #7A67EE #FFD700 #FFB6C1 \\#CD9B1D #B4EEB4 #D9D9D9 #3A5FCD #1E90FF #CDB79E #CDB79E #FFD39B \\#A6A6A6 #008B45 #EED5D2 #EED5D2 #FF00FF\ barChartLabel Tissue types\ barChartMatrixUrl /gbdb/hgFixed/human/expMatrix/cleanGtexMatrix.tab\ barChartMetric median\ barChartSampleUrl /gbdb/hgFixed/human/expMatrix/cleanGtexSamples.tab\ barChartUnit TPM\ bigDataUrl /gbdb/hg19/gtex/gtexTranscExpr.bb\ defaultLabelFields name2, name\ group expression\ labelFields name2, name\ longLabel Transcript Expression in 53 tissues from GTEx RNA-seq of 8555 samples/570 donors\ maxItems 300\ maxLimit 8000\ origAssembly hg38\ shortLabel GTEx Transcript\ track gtexTranscExpr\ type bigBarChart\ gwasCatalog GWAS Catalog bed 4 + NHGRI-EBI Catalog of Published Genome-Wide Association Studies 0 100 0 90 0 127 172 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track displays single nucleotide polymorphisms (SNPs) identified by published \ Genome-Wide Association Studies (GWAS), collected in the \ NHGRI-EBI GWAS Catalog\ published jointly by the National\ Human Genome Research Institute (NHGRI) and the European Bioinformatics Institute (EMBL-EBI).\ Some abbreviations\ are used above.\

\

\ From http://www.ebi.ac.uk/gwas/docs/about:\

\ The Catalog is a quality controlled, manually curated, literature-derived\ collection of all published genome-wide association studies assaying at least\ 100,000 SNPs and all SNP-trait associations with p-values < 1.0 x\ 10-5 (Hindorff et al., 2009). For more details about the Catalog\ curation process and data extraction procedures, please refer to the\ Methods page.\
\

\ \

Methods

\ \

\ From http://www.ebi.ac.uk/gwas/docs/methods:\

\ The GWAS Catalog data is extracted from the literature. Extracted information\ includes publication information, study cohort information such as cohort size,\ country of recruitment and subject ethnicity, and SNP-disease association\ information including SNP identifier (i.e. RSID), p-value, gene and risk\ allele. Each study is also assigned a trait that best represents the phenotype\ under investigation. When multiple traits are analysed in the same study either\ multiple entries are created, or individual SNPs are annotated with their\ specific traits. Traits are used both to query and visualise the data in the\ Catalog's web form and diagram-based query interfaces.\

\ Data extraction and curation for the GWAS Catalog is an expert activity; each\ step is performed by scientists supported by a web-based tracking and data\ entry system which allows multiple curators to search, annotate, verify and\ publish the Catalog data. Papers that qualify for inclusion in the Catalog are\ identified through weekly PubMed searches. They then undergo two levels of\ curation. First all data, including association information for SNPs, traits\ and general information about the study, are extracted by one curator. A second\ curator then performs an additional round of curation to double-check the\ accuracy and consistency of all the information. Finally, an automated pipeline\ performs validation of the extracted data, see the\ Quality control and SNP mapping section below for more\ details. This information is then used for queries and in the production of the\ diagram.\
\

\ \

Data Access

\ The raw data can be explored interactively with the Table Browser, or Data Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server\ (gwasCatalog*.txt.gz) or the public MySQL server. Please refer to our\ mailing list archives\ for questions, or our Data Access FAQ for more information.\

\ \

\ Previous versions of this track can be found on our archive download server.\

\ \

References

\

\ Hindorff LA, Sethupathy P, Junkins HA, Ramos EM, Mehta JP, Collins FS, Manolio TA.\ \ Potential etiologic and functional implications of genome-wide association loci for human diseases\ and traits.\ Proc Natl Acad Sci U S A. 2009 Jun 9;106(23):9362-7.\ PMID: 19474294; PMC: PMC2687147\

\ phenDis 1 color 0,90,0\ group phenDis\ longLabel NHGRI-EBI Catalog of Published Genome-Wide Association Studies\ shortLabel GWAS Catalog\ snpTable snp144\ snpVersion 144\ track gwasCatalog\ type bed 4 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ gwipsvizRiboseq GWIPS-viz Riboseq bigWig 0 3589344 Ribosome Profiling from GWIPS-viz 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ Ribosome profiling (ribo-seq) is a technique that takes advantage of NGS\ technology to sequence ribosome-protected mRNA fragments and consequently\ allows the locations of translating ribosomes to be determined at the entire\ transcriptome level (Ingolia et al., 2009).\

\ \

\ For a more detailed description of the protocol, see Ingolia et al.\ (2012). For reviews on this technique and its applications, please refer to\ Ingolia (2014) and Michel et al. (2013).\

\ \

\ This track displays cumulative ribo-seq data obtained from human cells under\ different conditions and can be used for the exploration of human genomic loci\ that are being translated. The values on the y-axis represent the number of\ ribosome footprint sequence reads at a given position. As of December\ 2014, the track contains data from 12 studies (see References section for\ details). Further details about the aggregated track and additional ribo-seq\ data from these and other studies including data obtained from other organisms\ can be found at the specialized ribo-seq browser\ GWIPS-viz.\

\ \

Methods

\ \

\ For each study used to generate this track, raw fastq files were downloaded from\ a repository (e.g., NCBI GEO datasets).\ Cutadapt\ was used to trim the relevant adapter sequence from the reads, after which reads\ below 25 nt in length were discarded. The trimmed reads were aligned to\ ribosomal RNA using\ Bowtie\ and aligning reads were discarded. The remaining reads were then aligned to the\ hg19 (GRCh37) genome assembly using\ RUM. An\ offset of 15 nt (to infer the position of the A-site) was added to the most 5'\ nucleotide coordinate of each uniquely-mapped read.\

\ \

\ The alignment files from each of the included studies were merged to generate\ this aggregate track.\

\ \

\ See individual studies at\ GWIPS-viz for a full\ description of the methods of data acquisition and processing.\

\ \

Credits

\ \

\ Thanks to Audrey Michel and GWIPS-viz for providing the data for this track.\ If you wish to cite this track, please reference:\

\ \

\ Michel AM, Fox G, M Kiran A, De Bo C, O'Connor PB, Heaphy SM, Mullan JP, Donohue CA, Higgins DG,\ Baranov PV.\ \ GWIPS-viz: development of a ribo-seq genome browser.\ Nucleic Acids Res. 2014 Jan;42(Database issue):D859-64.\ PMID: 24185699; PMC: PMC3965066\

\ \

References

\ \

Data

\ \

\ Fritsch C, Herrmann A, Nothnagel M, Szafranski K, Huse K, Schumann F, Schreiber S, Platzer M,\ Krawczak M, Hampe J et al.\ \ Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal\ footprinting.\ Genome Res. 2012 Nov;22(11):2208-18.\ PMID: 22879431; PMC: PMC3483550\

\ \

\ Gonzalez C, Sims JS, Hornstein N, Mela A, Garcia F, Lei L, Gass DA, Amendolara B, Bruce JN, Canoll P\ et al.\ \ Ribosome profiling reveals a cell-type-specific translational landscape in brain tumors.\ J Neurosci. 2014 Aug 13;34(33):10924-36.\ PMID: 25122893; PMC: PMC4131009\

\ \

\ Guo H, Ingolia NT, Weissman JS, Bartel DP.\ \ Mammalian microRNAs predominantly act to decrease target mRNA levels.\ Nature. 2010 Aug 12;466(7308):835-40.\ PMID: 20703300; PMC: PMC2990499\

\ \

\ Hsieh AC, Liu Y, Edlind MP, Ingolia NT, Janes MR, Sher A, Shi EY, Stumpf CR, Christensen C, Bonham\ MJ et al.\ \ The translational landscape of mTOR signalling steers cancer initiation and metastasis.\ Nature. 2012 Feb 22;485(7396):55-61.\ PMID: 22367541; PMC: PMC3663483\

\ \

\ Lee S, Liu B, Lee S, Huang SX, Shen B, Qian SB.\ \ Global mapping of translation initiation sites in mammalian cells at single-nucleotide\ resolution.\ Proc Natl Acad Sci U S A. 2012 Sep 11;109(37):E2424-32.\ PMID: 22927429; PMC: PMC3443142\

\ \

\ Liu B, Han Y, Qian SB.\ \ Cotranslational response to proteotoxic stress by elongation pausing of ribosomes.\ Mol Cell. 2013 Feb 7;49(3):453-63.\ PMID: 23290916; PMC: PMC3570626\

\ \

\ Loayza-Puch F, Drost J, Rooijers K, Lopes R, Elkon R, Agami R.\ \ p53 induces transcriptional and translational programs to suppress cell proliferation and\ growth.\ Genome Biol. 2013 Apr 17;14(4):R32.\ PMID: 23594524; PMC: PMC4053767\

\ \

\ Reid DW, Nicchitta CV.\ \ Primary role for endoplasmic reticulum-bound ribosomes in cellular translation identified by\ ribosome profiling.\ J Biol Chem. 2012 Feb 17;287(8):5518-27.\ PMID: 22199352; PMC: PMC3285328\

\ \

\ Stadler M, Fire A.\ \ Wobble base-pairing slows in vivo translation elongation in metazoans.\ RNA. 2011 Dec;17(12):2063-73.\ PMID: 22045228; PMC: PMC3222120\

\ \

\ Stern-Ginossar N, Weisburd B, Michalski A, Le VT, Hein MY, Huang SX, Ma M, Shen B, Qian SB, Hengel H\ et al.\ \ Decoding human cytomegalovirus.\ Science. 2012 Nov 23;338(6110):1088-93.\ PMID: 23180859; PMC: PMC3817102\

\ \

\ Stumpf CR, Moreno MV, Olshen AB, Taylor BS, Ruggero D.\ \ The translational landscape of the mammalian cell cycle.\ Mol Cell. 2013 Nov 21;52(4):574-82.\ PMID: 24120665; PMC: PMC3959127\

\ \

\ Wein N, Vulin A, Falzarano MS, Szigyarto CA, Maiti B, Findlay A, Heller KN, Uhlén M,\ Bakthavachalu B, Messina S et al.\ \ Translation from a DMD exon 5 IRES results in a functional dystrophin isoform that attenuates\ dystrophinopathy in humans and mice.\ Nat Med. 2014 Sep;20(9):992-1000.\ PMID: 25108525; PMC: PMC4165597\

\ \

Protocol/Technique

\ \

\ Ingolia NT.\ \ Ribosome profiling: new views of translation, from single codons to genome scale.\ Nat Rev Genet. 2014 Mar;15(3):205-13.\ PMID: 24468696\

\ \

\ Ingolia NT, Brar GA, Rouskin S, McGeachy AM, Weissman JS.\ \ The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-\ protected mRNA fragments.\ Nat Protoc. 2012 Jul 26;7(8):1534-50.\ PMID: 22836135; PMC: PMC3535016\

\ \

\ Ingolia NT, Ghaemmaghami S, Newman JR, Weissman JS.\ \ Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.\ Science. 2009 Apr 10;324(5924):218-23.\ PMID: 19213877; PMC: PMC2746483\

\ \

\ Michel AM, Baranov PV.\ \ Ribosome profiling: a Hi-Def monitor for protein synthesis at the genome-wide scale.\ Wiley Interdiscip Rev RNA. 2013 Sep-Oct;4(5):473-90.\ PMID: 23696005; PMC: PMC3823065\

\ expression 0 autoScale off\ group expression\ html gwipsvizRiboseq\ longLabel Ribosome Profiling from GWIPS-viz\ maxHeightPixels 100:32:8\ shortLabel GWIPS-viz Riboseq\ track gwipsvizRiboseq\ type bigWig 0 3589344\ viewLimits 0:2000\ visibility hide\ ntHumChimpCodingDiff H-C Coding Diffs bed 9 . Neandertal Alleles in Human/Chimp Coding Non-synonymous Differences in Human Lineage 0 100 0 0 0 127 127 127 0 0 24 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY,

Description

\

\ This track displays Neandertal alleles for human-chimp protein-coding\ differences on the human lineage using orangutan as the outgroup to \ determine which allele is more likely to be ancestral. \

\ \

Display Conventions and Configuration

\

\ Neandertal ancestral alleles are colored blue; derived \ (human) alleles are colored green. \

\

\ The item names show the number of Neandertal reads for the ancestral\ and derived alleles, followed by the ancestral and derived codons enclosed in\ parentheses.\ For example, if no Neandertal reads matched the ancestral base G and\ three Neandertal reads matched the derived base A, and the ancestral and\ derived codons were GTA and ATA respectively, then the item name would\ be "0G>3A(GTA>ATA)".\ If N Neandertal reads match neither ancestral nor derived\ base, then a "+N?" is added before the codons\ (i.e. "0G>3A+N?(GTA>ATA)").\

\ \

Methods

\

\ Neandertal DNA was extracted from a ~49,000-year-old bone\ (Sidrón 1253), which was excavated in El Sidrón cave,\ Asturias, Spain. Non-synonymous changes that occurred on the human\ lineage since the ancestral split with chimpanzee were identified by\ aligning human, chimpanzee and orangutan protein sequences for all\ orthologous proteins in\ HomoloGene\ (Build 58) . Comparison of these three species allowed the assignment\ of human/chimpanzee differences to their respective evolutionary\ lineages. An Agilent custom oligonucleotide array covering the 13,841\ non-synonymous changes inferred to have occurred in the human lineage\ was designed and used to capture Neandertal sequences. \

\ \

Reference

\

\ Burbano HA, Hodges E, Green RE, Briggs AW, Krause J, Meyer M, Good JM, Maricic T, Johnson PL, Xuan Z\ et al.\ \ Targeted investigation of the Neandertal genome by array-based sequence capture.\ Science. 2010 May 7;328(5979):723-5.\ PMID: 20448179; PMC: PMC3140021\

\ neandertal 1 chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY\ group neandertal\ itemRgb on\ longLabel Neandertal Alleles in Human/Chimp Coding Non-synonymous Differences in Human Lineage\ noScoreFilter .\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel H-C Coding Diffs\ track ntHumChimpCodingDiff\ type bed 9 .\ visibility hide\ hinv70Composite H-Inv 7.0 bed 12 H-Inv 7.0 Gene Predictions 0 100 0 0 0 127 127 127 0 0 0 http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$$

Description

\ \

\ This track shows alignments of full-length cDNAs that were used as the basis\ of the H-Invitational Gene Database (HInv-DB version 7.0).\ This is the version 7.0 update from March 2010.\

\ \

\ HInv-DB entries describe the following entities:\

    \
  • gene structures
    • \
  • functions
    • \
  • novel alternative splicing isoforms
    • \
  • non-coding functional RNAs
    • \
  • functional domains
    • \
  • sub-cellular localizations
    • \
  • metabolic pathways
    • \
  • predictions of protein 3D structure
    • \
  • mapping of SNPs and microsatellite repeat motifs in relation with orphan\ diseases
    • \
  • gene expression profiling
    • \
  • comparative results with mouse full-length cDNAs gene structures
    • \
\

\ \

Methods

\ \

\ To cluster redundant cDNAs and alternative splicing variants within the H-Inv\ cDNAs, a total of 41,118 H-Inv cDNAs were mapped to the human genome using\ the mapping pipeline developed by the Japan Biological Information Research\ Center (JBIRC). The mapping yielded 40,140 cDNAs that\ were aligned against the genome using the stringent criteria of at least 95%\ identity and 90% length coverage. These 40,140 cDNAs were clustered to 20,190\ loci, resulting in an average of 2.0 cDNAs per locus. For the remaining 978\ unmapped cDNAs, cDNA-based clustering was applied, yielding 847 clusters.\ In total, 21,037 clusters (20,190 mapped and 847 unmapped) were identified\ and integrated into H-InvDB. H-Inv cluster IDs (e.g. HIX0000001) were\ assigned to these clusters. A representative sequence was selected from each\ cluster and used for further analyses and annotation.\

\ \

\ A full description of the construction of the HInv-DB is contained in the\ report by the H-Inv Consortium (see References section).\

\ \

Credits

\ \

\ The H-InvDB is hosted at the Biomedicinal Information Research Center (BIRC),\ National Institute of Advanced Industrial Science and Technology (AIST) in\ Japan. The human-curated annotations were produced during invitational\ annotation meetings held in Japan during the summer of 2002, with a follow-up\ meeting in November 2004. Participants included 158 scientists\ representing 67 institutions from 12 countries.\

\ \

\ The full-length cDNA clones and sequences were produced by the\ Chinese National Human Genome Center (CHGC),\ the Deutsches Krebsforschungszentrum (DKFZ/MIPS),\ Helix Research Institute, Inc. (HRI),\ the Institute of Medical Science in the University of Tokyo (IMSUT),\ the Kazusa DNA Research Institute (KDRI),\ the Mammalian Gene Collection (MGC/NIH) and the\ Full-Length Long Japan (FLJ) project.\

\ \

References

\ \

\ Genome Information Integration Project And H-Invitational 2, Yamasaki C, Murakami K, Fujii Y, Sato\ Y, Harada E, Takeda J, Taniya T, Sakate R, Kikugawa S et al.\ \ The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and\ transcripts.\ Nucleic Acids Res. 2008 Jan;36(Database issue):D793-9.\ PMID: 18089548; PMC: PMC2238988\

\ \

\ Imanishi T, Itoh T, Suzuki Y, O'Donovan C, Fukuchi S, Koyanagi KO, Barrero RA, Tamura T, Yamaguchi-\ Kabata Y, Tanino M et al.\ \ Integrative annotation of 21,037 human genes validated by full-length cDNA clones.\ PLoS Biol. 2004 Jun;2(6):e162.\ PMID: 15103394; PMC: PMC393292\

\ \

\ Yamasaki C, Murakami K, Takeda J, Sato Y, Noda A, Sakate R, Habara T, Nakaoka H, Todokoro F, Matsuya\ A et al.\ \ H-InvDB in 2009: extended database and data mining resources for human genes and transcripts.\ Nucleic Acids Res. 2010 Jan;38(Database issue):D626-32.\ PMID: 19933760; PMC: PMC2808976\

\ genes 1 compositeTrack on\ configureByPopup off\ group genes\ longLabel H-Inv 7.0 Gene Predictions\ shortLabel H-Inv 7.0\ track hinv70Composite\ type bed 12\ url http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$$\ visibility hide\ wgEncodeAwgTfbsSydhH1hescCtbp2UcdUniPk H1-hESC CTBP2 narrowPeak H1-hESC TFBS Uniform Peaks of CtBP2 from ENCODE/USC/Analysis 1 100 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of CtBP2 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC CTBP2\ subGroups tier=a10 cellType=a10H1HESC factor=CTBP2 lab=USC\ track wgEncodeAwgTfbsSydhH1hescCtbp2UcdUniPk\ wgEncodeHaibGenotype HAIB Genotype bed 9 + Genotype (CNV and SNP) by Illumina 1MDuo and CBS from ENCODE/HudsonAlpha 0 100 0 0 0 127 127 127 0 0 0

Description

\

This track is produced as part of the ENCODE project. The track displays copy number variation (CNV) as determined by the Illumina Human 1M-Duo Infinium HD BeadChip assay and circular binary segmentation (CBS). The Human 1M-Duo contains more than 1,100,000 tagSNP markers and a set of ~60,000 additional CNV-targeted markers. The median spacing between markers is 1.5 kb and the mean spacing is 2.4 kb. The B-allele frequency and genotyping single nucleotide polymorphism (SNP) data generated by the experiment are not displayed, but are available for download from the Downloads page. \

\ \

Where applicable, biological replicates of each cell line are reported separately. Possible uses of the data include correction of copy number in peak-calling for ChIP-seq, transcriptome, DNase hypersensitivity, and methylation determinations.\

\ \

Display Conventions and Configuration

\

Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

\

The track displays regions of the genome where copy number variation has been assessed. CNV regions are colored by type:

\
    \
  • blue = amplified \
  • black = normal\
  • orange = heterozygous deletion \
  • red = homozygous deletion\
\ \

The mean log R ratio for each region can be seen by clicking on each individual region. See Methods below for significance of log R ratio values. The mean log R ratio for each region is reported in the .bed file available for download.\

\

The Illumina 1M-Duo B-allele frequency data is available from the Supplemental Materials directory on the Downloads page. The file (wgEncodeHaibGenotypeBalleleSnp.txt) was generated using the standard Illumina protocol and contains the B-allele frequency for all cell types tested. The genotype calls for all cell types tested are also available for download (wgEncodeHaibGenotypeGtypeSnp.txt). Genotyping calls with a Gencall value greater than 0.6 are considered significant. \

\ \

Replicate Numbering

\

\ The replicate labeling in the genome browser view is a\ counter indicating the total number of replicates submitted (UCSC Rep). \ The producing lab has replicate numbers (Lab Rep) that correspond to their internal bio-replicate numbering.\ Where these two numbering systems conflict, both are listed in the long label of the specific track.\ When comparing data across tracks, the lab replicate number should be considered. In the downloads directory both replicate numbers are listed. The files are labeled with the lab replicate number.\

\ \ \

Methods

\ \

Isolation of genomic DNA and hybridization

\

Cells were grown according to the approved ENCODE cell culture protocols by the Myers lab and by other ENCODE production groups. The production group is reported in the metadata. Genomic DNA was isolated using the DNeasy Blood and Tissue Kit (Qiagen). DNA concentration and quality were determined by fluorescence (Invitrogen Quant-iT dsDNA High Sensitivity Kit and Qubit Fluorometer), and 400 nanograms of each sample were hybridized to Illumina 1M-Duo DNA Analysis BeadChips.\

\ \

Processing and Analysis

\

\ The genotypes from the 1M-Duo Arrays were ascertained with BeadStudio by using default settings and formatting with the A/B genotype designation for each SNP. Primary QC for each sample was a cut-off at a call rate of 0.95.\

\

\ Copy Number Variation (CNV) analysis was performed with circular binary segmentation (DNAcopy) of the log R ratio values at each probe (Olshen et al., 2004). The parameters used were alpha=0.001, nperm=5000, sd.undo=1. The copy number segments are reported with the mean log R ratio for each chromosomal segment called by CBS. Log ratios of ~-0.2 to -1.5 can be considered heterozygous deletions, < -1.5 homozygous deletions, and > 0.2 amplifications. Primary QC for each sample was SD of < 0.6.\

\ \

Release Notes

\

This is release 2 of this track (Jan 2012). This is a correction release. There are no new experiments. The affected tracks are:
\ wgEncodeHaibGenotypeGm12878RegionsRep1 - replaced by wgEncodeHaibGenotypeGm12878RegionsRep1V2 \ due to mapping off the end of the chromosome in the original version.
\ wgEncodeHaibGenotypeAstrocyRegionsRep1 - renamed to wgEncodeHaibGenotypeNhaDukeRegionsRep1 \ Astrocytes and NH-A are the same cell line.
\
\ In addition to the above changes, color values for the files have been corrected as well. This does not affect any data values.\
\

\

\ \ This is the NCBI Build37 (hg19) release of this track. This release includes the 3 cell types previously released on NCBI Build36 (hg18) which were lifted to NCBI Build37 (hg19) and adds data for many more cell types. The track includes a single display for each cell type and reports the Log ratio in the .bed files. The B-allele frequency and SNP genotyping files are not displayed, but are available for download for the entire dataset from the downloads page.\

\ \ \

Credits

\

These data were produced by the Dr. Richard Myers Lab and the Dr. Devin Absher lab at the HudsonAlpha Institute for Biotechnology. \

Cells were grown by the Myers Lab and other ENCODE production groups. \

\ Contact:\ Dr. Florencia Pauli.\ \ \ \

References

\ \

\ Olshen AB, Venkatraman ES, Lucito R, Wigler M.\ \ Circular binary segmentation for the analysis of array-based DNA copy number data.\ Biostatistics. 2004 Oct;5(4):557-72.\

\ \

Data Release Policy

\

Data users may freely use ENCODE data, but may not, without prior consent, submit publications that use an unpublished ENCODE dataset until nine months following the release of the dataset. This date is listed in the Restricted Until column on the track configuration page and the download page. The full data release policy for ENCODE is available here.\

\ varRep 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell treatment=treatment\ dimensions dimY=cellType dimX=rep\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line treatment=Treatment obtainedBy=Obtained_By dccRep=UCSC
Rep replicate=Lab
Rep dccAccession=UCSC_Accession geoSampleAccession=GEO
Accession fileSize=Size\ group varRep\ html wgEncodeHaibGenotype.release2\ itemRgb on\ longLabel Genotype (CNV and SNP) by Illumina 1MDuo and CBS from ENCODE/HudsonAlpha\ noScoreFilter .\ shortLabel HAIB Genotype\ sortOrder cellType=+ rep=+ obtainedBy=+\ subGroup1 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2A549=A549 (Tier_2) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2IMR90=IMR90 (Tier_2) t2MCF7=MCF-7 (Tier_2) t3AG04449=AG04449 t3AG04450=AG04450 t3AG09309=AG09309 t3AG09319=AG09319 t3AG10803=AG10803 t3AOSMC=AoSMC t3BJ=BJ t3CACO2=Caco-2 t3CHORION=Chorion t3CMK=CMK t3GM06990=GM06990 t3GM12891=GM12891 t3GM12892=GM12892 t3GM19239=GM19239 t3HAEPIC=HAEpiC t3HCF=HCF t3HCM=HCM t3HCPEPIC=HCPEpiC t3HEEPIC=HEEpic t3HEK293=HEK293 t3HIPEPIC=HIPEpiC t3HL60=HL-60 t3HMEC=HMEC t3HNPCEPIC=HNPCEpiC t3HPAEPIC=HPAEpiC t3HRCEPIC=HRCEpiC t3HRE=HRE t3HRPEPIC=HRPEpiC t3HSMM=HSMM t3HSMMTUBE=HSMM_tube t3HTR8SVN=HTR8svn t3JEJUNUMBCH12817N=Jejunum_BC_H12817N t3JURKAT=Jurkat t3LNCAP=LNCaP t3MCF10AERSRC=MCF10A-Er-Src t3MCF10AESTAM=MCF10A-Er-Src_(Tamoxifin) t3MELANO=Melano t3MYOMETR=Myometr t3NB4=NB4 t3NHAd=NH-A_(Duke) t3NHAu=NH-A_(UW) t3NHBE=NHBE t3NHDFNEO=NHDF-neo t3NT2D1=NT2-D1 t3OVCAR3=Ovcar-3 t3PANC1=PANC-1 t3PFSK1=PFSK-1 t3PREC=PrEC t3RPTEC=RPTEC t3SAEC=SAEC t3SKNSHRA=SK-N-SH_RA t3SKMC=SKMC t3SMALLINTESTINEBC0111002=Small_Intestine_BC_01-11002 t3T47D=T-47D t3U87=U87\ subGroup2 obtainedBy ObtainedBy Duke=Duke HudsonAlpha=HudsonAlpha Stanford=Stanford UW=UW\ subGroup3 treatment Treatment None=None TAM=Tamoxifen\ subGroup4 rep Replicate rep1=1 rep2=2 rep3=3 rep4=4 rep5=5 rep6=6\ track wgEncodeHaibGenotype\ type bed 9 +\ visibility hide\ wgEncodeHaibMethylRrbs HAIB Methyl RRBS bed 9 + DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha 1 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ This track was produced as part of the ENCODE project. The track reports the\ percentage of DNA molecules that exhibit cytosine methylation at specific CpG\ dinucleotides. In general, DNA methylation within a gene's promoter is associated\ with gene silencing and DNA methylation within the exons and introns of a gene is\ associated with gene expression. Proper regulation of DNA methylation is essential\ during development and aberrant DNA methylation is a hallmark of cancer. DNA\ methylation status was assayed at more than 500,000 CpG dinucleotides in the genome\ using Reduced Representation Bisulfite Sequencing (RRBS). Genomic DNA was digested\ with the methyl-insensitive restriction enzyme MspI and then small genomic DNA fragments\ were purified by gel electrophoresis and used to construct an Illumina sequencing\ library. The library fragments were treated with sodium bisulfite and amplified by\ PCR to convert every unmethylated cytosine to a thymidine while leaving methylated\ cytosines intact. The sequenced fragments were aligned to a customized reference\ genome sequence. For each assayed CpG, the number of sequencing reads covering that\ CpG and the percentage of those reads that were methylated were reported.\

\ \

Display Conventions and Configuration

\ \

\ Methylation status is represented with an 11-color gradient using the following convention:\

\ \
    \
  • red = 100% of molecules sequenced are methylated
    • \
  • yellow = 50% of molecules sequenced are methylated
    • \
  • green = 0% of molecules sequenced are methylated
    • \
\ \

\ The score in this track reports the number of sequencing reads obtained for each CpG,\ which is often called 'coverage'. The score is capped at 1000, so any CpGs that were covered\ by more than 1000 sequencing reads have a score of 1000. The BED files available for\ download contain two extra columns: one with the uncapped coverage (number of reads at that\ site) and one with the percentage of those reads that show methylation. High reproducibility\ was obtained, with correlation coefficients greater than 0.9 between biological replicates,\ when only considering CpGs represented by at least 10 sequencing reads (10X coverage, score=10).\ Therefore, the default view for this track is set to 10X coverage, or a score of 10.\

\ \

\ Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.\

\ \

Methods

\ \

\ DNA methylation at CpG sites was assayed with a modified version of Reduced Representation\ Bisulfite Sequencing (Meissner et al., 2008). RRBS was performed on cell lines\ grown by many ENCODE production groups. The production group that grew the cells and isolated\ genomic DNA is indicated in the "obtainedBy" field of the metadata. When a cell type was\ provided by more than one lab, the data from only one lab are available for immediate display.\ However, the data for every cell type from every lab is available from the\ Downloads page.\ RRBS was also performed on genomic DNA from tissue samples provided by BioChain. The replicates\ for the BioChain tissues are technical replicates (rather than biological replicates) beginning\ at the bisulfite treatment step. RRBS was carried out by the Myers production group at the\ HudsonAlpha Institute for Biotechnology.\

\ \

Isolation of Genomic DNA

\ \

\ Genomic DNA was isolated from biological replicates of each cell line using the QIAGEN DNeasy\ Blood & Tissue Kit according to the instructions provided by the manufacturer. DNA\ concentrations for each genomic DNA preparation were determined using fluorescent DNA binding\ dye and a fluorometer (Invitrogen Quant-iT dsDNA High Sensitivity Kit and Qubit Fluorometer).\ Typically, 1 µg of DNA is used to make an RRBS library; however, there has been success\ in making libraries with 200 ng genomic DNA from rare or precious samples.\

\ \

RRBS Library Construction and Sequencing

\ \

\ RRBS library construction started with MspI digestion of genomic DNA, which cut at every CCGG\ regardless of methylation status. Klenow exo- DNA Polymerase was then used to fill in the recessed\ end of the genomic DNA and add an adenosine as a 3' overhang. Next, a methylated version of\ the Illumina paired-end adapters was ligated onto the DNA. Adapter-ligated genomic DNA fragments\ between 105 and 185 base pairs were selected using agarose gel electrophoresis and a Qiagen Qiaquick\ Gel Extraction Kit. The selected adapter-ligated fragments were treated with sodium bisulfite using\ the Zymo Research EZ DNA Methylation Gold Kit, which converts unmethylated cytosines to uracils and\ leaves methylated cytosines unchanged. Bisulfite treated DNA was amplified in a final PCR reaction\ which was optimized to uniformly amplify diverse fragment sizes and sequence contexts in the same\ reaction. During this final PCR reaction, uracils were copied as thymines resulting in a thymine in the\ PCR products wherever an unmethylated cytosine existed in the genomic DNA. The sample was then ready for\ sequencing on the Illumina sequencing platform. These libraries were sequenced with an Illumina Genome\ Analyzer IIx according to the manufacturer's recommendations. The full RRBS protocol can be found\ here.\

\ \

Data Analysis

\ \

\ To analyze the sequence data, a reference genome was created that contained only the 36 base pairs\ adjacent to every MspI site and in which every C was changed to a T. A converted sequence read file\ was then created by changing each C in the original sequence reads to a T. The converted sequence\ reads were aligned to the converted reference genome and only reads that mapped uniquely to the\ reference genome were kept. Once the reads were aligned, the percent methylation was calculated for\ each CpG using the original sequence reads. The percent methylation and number of reads were reported\ for each CpG.\

\ \

Release Notes

\ \

\ This is Release 3 (July 2012) of this track which adds the MCF-7 cell line with\ shRNA knockdowns\ obtained from the Crawford Lab at Duke University.\

\ \

Credits

\ \

\ These data were produced by the Dr. Richard Myers Lab\ at the HudsonAlpha Institute for Biotechnology.\

\ \

\ Cells were grown by the Myers Lab and other ENCODE production groups.\

\ \

\ Contact:\ Dr. Florencia Pauli\

\ \ \

References

\ \

\ Meissner A, Mikkelsen TS, Gu H, Wernig M, Hanna J, Sivachenko A, Zhang X, Bernstein BE, Nusbaum C, Jaffe DB et al.\ \ Genome-scale DNA methylation maps of pluripotent and differentiated cells.\ Nature. 2008 Aug 7;454(7205):766-70.\

\ \

Data Release Policy

\ \

\ Data users may freely use ENCODE data, but may not, without prior consent,\ submit publications that use an unpublished ENCODE dataset until nine months\ following the release of the dataset. This date is listed in the\ Restricted Until column, above. The full data release policy for\ ENCODE is available here.\

\ regulation 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell treatment=treatment obtainedBy=lab\ dimensions dimensionX=rep dimensionY=cellType dimensionC=obtainedBy\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line treatment=Treatment obtainedBy=Source replicate=Rep labExpId=Lab_ID dccAccession=UCSC_Accession geoSampleAccession=GEO
Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ filterComposite dimensionC=all\ group regulation\ html wgEncodeHaibMethylRrbs.release3\ itemRgb on\ longLabel DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha\ priority 0\ scoreFilter 10\ scoreFilterLimits 0:1000\ shortLabel HAIB Methyl RRBS\ sortOrder cellType=+ rep=+ treatment=+ obtainedBy=+\ subGroup1 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2A549=A549 (Tier_2) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2IMR90=IMR90 (Tier_2) t2MCF7=MCF-7 (Tier_2) t2SKNSH=SK-N-SH (Tier_2) t3ADRENALGLANDBCH12803N=Adrenal_Gland_BC_H12803N t3AG04449=AG04449 t3AG04450=AG04450 t3AG09309=AG09309 t3AG09319=AG09319 t3AG10803=AG10803 t3AOSMC=AoSMC t3BE2C=BE2_C t3BJ=BJ t3BRAINBCH11058N=Brain_BC_H11058N t3BREASTBC0203015=Breast_BC_02-03015 t3CACO2=Caco-2 t3CMK=CMK t3ECC1=ECC-1 t3FIBROBL=Fibrobl t3GM06990=GM06990 t3GM12878XIMAT=GM12878-XiMat t3GM12891=GM12891 t3GM12892=GM12892 t3GM19239=GM19239 t3GM19240=GM19240 t3HAEPIC=HAEpiC t3HCF=HCF t3HCM=HCM t3HCPEPIC=HCPEpiC t3HCT116=HCT-116 t3HEEPIC=HEEpiC t3HEK293=HEK293 t3HEPATOCYTES=Hepatocytes t3HIPEPIC=HIPEpiC t3HL60=HL-60 t3HMEC=HMEC t3HNPCEPIC=HNPCEpiC t3HPAEPIC=HPAEpiC t3HRCEPIC=HRCEpiC t3HRE=HRE t3HRPEPIC=HRPEpiC t3HSMM=HSMM t3HSMMFSHD=HSMM_FSHD t3HSMMTUBE=HSMMtube t3HSMMTUBEFSHD=HSMMtube_FSHD t3HTR8SVN=HTR8svn t3JURKAT=Jurkat t3KIDNEYBC0111002=Kidney_BC_01-11002 t3LEFTVENTRICLEBCN41=Left_Ventricle_BC_N41 t3LEUKOCYTEBCUHN00204=Leukocyte_BC_UHN00204 t3LIVERBC0111002=Liver_BC_01-11002 t3LNCAP=LNCaP t3LUNGBC0111002=Lung_BC_01-11002 t3MCF7SHRNA=MCF-7_shRNA t3MCF10AERSRC=MCF10A-Er-Src t3MELANO=Melano t3MYOMETR=Myometr t3NB4=NB4 t3NHA=NH-A t3NHBE=NHBE t3NHDFNEO=NHDF-neo t3NT2D1=NT2-D1 t3OSTEOBLASTS=Osteoblasts t3OVCAR3=Ovcar-3 t3PANC1=PANC-1 t3PANCREASBCH12817N=Pancreas_BC_H12817N t3PANISLETS=PanIslets t3PERICARDIUMBCH12529N=Pericardium_BC_H12529N t3PFSK1=PFSK-1 t3PLACENTABCUHN00189=Placenta_BC_UHN00189 t3PREC=PrEC t3PROGFIB=ProgFib t3RPTEC=RPTEC t3SAEC=SAEC t3SKnMC=SK-N-MC t3SKnSHRA=SK-N-SH_RA t3SKELETALMUSCLEH12817N=Skeletal_Muscle_BC_H12817N t3SKELETALMUSCLEBC0111002=Skeletal_Muscle_BC_01-11002 t3SKINBC0111002=Skin_BC_01-11002 t3SKMC=SkMC t3STOMACHBC0111002=Stomach_BC_01-11002 t3T47D=T-47D t3TESTISBCN30=Testis_BC_N30 t3U87=U87 t3UCH1=UCH-1 t3UTERUSBCBN0765=Uterus_BC_BN0765\ subGroup2 rep Replicate rep1=1 rep2=2 rep3=3 rep4=4 rep5=5\ subGroup3 treatment Treatment zNone=None ANDRO=Androgen DM002P24H=DMSO_0.02%_24_h DM002P7D=DMSO_0.02%_7_d EST10NM24H=Estradiol SHRNACONT=shRNA_Control SHRNACTCF=shRNA_CTCF TAM=Tamoxifen\ subGroup4 obtainedBy Source BioChain=BioChain DUKE=Duke HAIB=Hudson_Alpha Stanford=Stanford UNC=UNC UW=UW Yale=Yale\ superTrack wgEncodeDnaMethylSuper dense\ track wgEncodeHaibMethylRrbs\ type bed 9 +\ visibility dense\ wgEncodeHaibMethyl450 HAIB Methyl450 bed 9 + CpG Methylation by Methyl 450K Bead Arrays from ENCODE/HAIB 1 100 0 0 0 127 127 127 0 0 0 \ \

Description

\

This track is produced as part of the ENCODE project. The track displays the methylation status of specific CpG dinucleotides in the given cell types as identified by the Illumina Infinium Human Methylation 450 Bead Array platform. In general, methylation of CpG sites within a promoter causes silencing of the gene associated with that promoter. \ \

The Infinium Human Methylation 450 platform uses bisulfite treated genomic DNA to assay the methylation status of more than 450,000 CpG sites covering all designatable RefSeq genes, including promoter, 5' and 3' regions, without bias against those lacking CpG islands. Additionally, the assay includes CpG islands and shores, CpG sites outside of CpG islands, non-CpG methylated sites identified in human stem cells, differentially methylated sites identified in tumor versus normal (multiple forms of cancer) and across several tissue types, CpG islands outside of coding regions, miRNA promoter regions, and disease-associated regions identified through GWAS.\

\

\ The detailed protocol, information for CpG targets, and beta values are available from the\ supplemental directory. \ \

\

Display Conventions and Configuration

\

\ Scores associated with each site are beta values (see Methods) multiplied by 1000. Methylation\ status is color-coded as:\

    \
  • orange = methylated (score >= 600)
    • \
  • purple = partially methylated (200 < score < 600)
    • \
  • bright blue = unmethylated (0 < score <= 200)
    • \
  • black = NA (score = 0)
    • \
\

\

\ Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.\

\ \

Methods

\ \

\ Cells were grown according to the approved\ ENCODE cell culture protocols.

\ \

Genomic DNA was isolated from each cell line with the QIAGEN DNeasy Blood & Tissue Kit according to the instructions provided by the manufacturer. DNA concentrations and a level of quality of each preparation was determined by fluorescence with the Qubit Fluorometer (Invitrogen). Genomic DNA was treated with sodium bisulfite, converting unmethylated cytosines of CpG dinucleotides into uracils; methylated cytosines did not get converted. After bisulfite treatment, the methylation status of a site was assayed by single base-pair extension with a Cy3 or Cy5 labeled nucleotide on oligo-beads specific for the methylated or unmethylated state. \ \

The bisulfite conversion reaction was done using the\ Zymo Research EZ-96 DNA MethylationTM Kit. One step of the protocol was modified. During the incubation, a 30 second 95oC denaturing step every hour was included to increase reaction efficiency as recommended by the Illumina Infinium Human Methylation27 protocol. \

\ \

The bead arrays were run according to the \ protocol provided by Illumina.\

\ \

A beta value was calculated for each CpG target with Illumina's Bead Studio software with the Methylation Module v3.2. Beta-value = intensity value from the methylated bead type/(intensity values from the methylated + intensity value from unmethylated bead types + 100). \ The data was then quality-filtered using p-values. Beta values with p-value greater than 0.01 are considered to fall below the minimum intensity and threshold are displayed as "NA".\

\

\ Any beta value equal to or greater than 0.6 was considered fully methylated. Any beta value equal to or less than 0.2 was considered to be fully unmethylated. Beta values between 0.2 and 0.6 were considered to be partially methylated. \

\ \

Release Notes

\

\ This is Release 1 (Dec 2011) of the 450K bead array data, with data corrections applied\ to the displayed data tables in May 2012. \ A perl script to correct coordinates in the download files has been included in the \ download directory.

\

\ The initial release had incorrect probe mappings. The data providers\ also requested these annotations be limited to the first nucleotide in the probe, \ so the single CpG assayed is displayed instead of the full probe. When the Infinium\ platform was first released, it was thought that methylation states of CpG's within the\ 50 bp window could be assigned by assaying a single nucleotide, but it has since been\ determined that methylation states vary even at close distances.\

\ \

Credits

\

\

These data were produced by the Dr. Richard Myers Lab and the Dr. Devin Absher lab at the HudsonAlpha Institute for Biotechnology. \

Cells were grown by the Myers Lab and other ENCODE production groups. \

\ Contact:\ Dr. Florencia Pauli.\ \ \ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior consent, submit publications that use an unpublished ENCODE dataset until nine months following the release of the dataset. This date is listed in the Restricted Until column on the track configuration page and the download page. The full data release policy for ENCODE is available\ here.

\ \ regulation 1 boxedCfg on\ compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell treatment=treatment obtainedBy=lab\ dimensions dimY=cellType dimX=treatment\ dragAndDrop subTracks\ group regulation\ itemRgb on\ longLabel CpG Methylation by Methyl 450K Bead Arrays from ENCODE/HAIB\ priority 0\ scoreFilter 0\ scoreFilterLimits 0:1000\ shortLabel HAIB Methyl450\ sortOrder cellType=+ treatment=+ obtainedBy=+\ subGroup1 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2A549=A549 (Tier_2) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2IMR90=IMR90 (Tier_2) t2MCF7=MCF-7 (Tier_2) t2SKNSH=SK-N-SH (Tier_2) t3AG04449=AG04449 t3AG04450=AG04450 t3AG09309=AG09309 t3AG09319=AG09319 t3AG10803=AG10803 t3AOSMC=AoSMC t3BE2C=BE2_C t3BJ=BJ t3CACO2=Caco-2 t3CMK=CMK t3ECC1=ECC-1 t3GM06990=GM06990 t3GM12891=GM12891 t3GM12892=GM12892 t3GM19239=GM19239 t3HAEPIC=HAEpiC t3HCF=HCF t3HCM=HCM t3HCPEPIC=HCPEpiC t3HCT116=HCT-116 t3HEEPIC=HEEpiC t3HEK293=HEK293 t3HEPATOCYTES=Hepatocytes t3HIPEPIC=HIPEpiC t3HL60=HL-60 t3HMEC=HMEC t3HNPCEPIC=HNPCEpiC t3HPAEPIC=HPAEpiC t3HRCEPIC=HRCEpiC t3HRE=HRE t3HRPEPIC=HRPEpiC t3JURKAT=Jurkat t3LNCAP=LNCaP t3MCF10AERSRC=MCF10A-Er-Src t3NB4=NB4 t3NHA=NH-A t3NHBE=NHBE t3NHDFNEO=NHDF-neo t3NT2D1=NT2-D1 t3OVCAR3=ovcar-3 t3PANC1=PANC-1 t3PFSK1=PFSK-1 t3PREC=PrEC t3PROGFIB=ProgFib t3RPTEC=RPTEC t3SAEC=SAEC t3SKMC=SkMC t3SKNMC=SK-N-MC t3SKNSHRA=SK-N-SH_RA t3T47D=T-47D t3U87=U87\ subGroup2 treatment Treatment zNONE=None DM002P24H=DMSO_.02%_24h ETOH02=EtOH_.02%_1h TAM=Tamoxifen_1uM_36h\ subGroup3 obtainedBy Obtained_by UW=UW HAIB=Hudson_Alpha Stanford=Stanford DUKE=Duke\ superTrack wgEncodeDnaMethylSuper dense\ track wgEncodeHaibMethyl450\ type bed 9 +\ visibility dense\ wgEncodeHaibRnaSeq HAIB RNA-seq bed 3 RNA-seq from ENCODE/HAIB 1 100 0 0 0 127 127 127 0 0 0

Description

\ \

This track was produced as part of the ENCODE Project. RNA-seq is a method for mapping and quantifying the transcriptome of any organism that has a genomic DNA sequence assembly (Mortazavi et al., 2008). Biological replicates of ENCODE cell lines were grown on separate culture plates, total RNA was purified and \ polyA selected two times. The mRNA extract was then fragmented by magnesium-catalyzed hydrolysis and reverse transcribed to cDNA by random priming and amplification. The cDNA was sequenced on an Illumina Genome Analyzer (GAI or GAIIx).

\ \

The DNA sequences were aligned to the NCBI Build37 (hg19) version of the human genome using the sequence alignment programs ELAND (Illumina) or Bowtie (Langmead et al., 2009). The first 10 residues of sequencing have a weak characteristic nucleotide bias of unknown origin. This RNA-seq protocol does not specify the coding strand. As a result, there will be ambiguity at loci where both strands are transcribed.

\ \ \

Display Conventions and Configuration

\ \

This track is a multi-view composite track that contains multiple data types (views). For each view, there are multiple subtracks (cell lines, replicates and growth conditions) that display individually on the browser. Instructions for configuring multi-view tracks are here. The following views are in this track: \ \ \

Alignments
\
The Alignments view shows reads mapped to the genome. See the Bowtie Manual\ for more information about the SAM Bowtie output (including tag definitions) and the\ SAM Format Specification for more information on\ the SAM/BAM file format.
\ The reads are named using the following convention:
\ Lane #:Tile #:X-coordinate:Y-coordinate\
\ \
Raw Signal
\
Density graph of signal enrichment based on a normalized aligned read density (Read Per Million, RPM). RPM is reported in the score field and is equal to the number of reads at that position divided by the total number of reads divided by one million. The Raw Signal view displays dense, continuous data as a graph and the RPM measure assists in visualizing the relative amount of a given transcript across multiple samples.
\ \

Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

\ \

Methods

\ \

Experimental Procedures

\ \

Cells were grown according to the approved ENCODE cell culture protocols. Cells were lysed in RLT buffer (Qiagen RNEasy kit) and processed on RNEasy midi columns according to the manufacturer's protocol, with the inclusion of the "on-column" DNase digestion step to remove residual genomic DNA. The mRNA was isolated from at least 10 ug of total RNA with oligo(dT) two times (Dynabeads mRNA PurificationgKit, Invitrogen). Alternatively, cells were lysed and mRNA was purified directly two times with oligo(dT) (Dynabeads mRNA DIRECT Kit, Invitrogen). A quantity of 100 ng of mRNA was fragmented by magnesium-catalyzed hydrolysis and reverse transcribed to cDNA by random priming according to the protocol in Mortazavi et al. (2008). The cDNA was prepared for sequencing on the Genome Analyzer flowcell according to the protocol for the ChIPSeq DNA genomic DNA kit (Illumina). The sequencing libraries were size-selected around 225 bp and amplified with 15 rounds of PCR.

\ \

Libraries were sequenced with an Illumina Genome Analyzer I or an Illumina Genome Analyzer IIx according to the manufacturer's recommendations. Single end reads of 36 nt in length were obtained. \

\ \

Data Processing and Analysis

\ \

FastQ files were made from qseq files generated by the Illumina pipeline (Casava 1.7). The Raw Signal files (bigWig) were generated from bedgraph files and the score was calculated as the number of reads at that position divided by the total number of reads divided by one million.

\ \

Casava export files were aligned to the NCBI Build37 (hg19) version of the human genome with ELAND (Illumina), generating SAM files. FastQ files of experiments that were previously aligned to NCBI Build36 (hg18) were aligned to NCBI Build37 (hg19) using Bowtie (Langmead et al., 2009; parameters: -S -n 2 -k 11 -m 10 --best), also generating SAM files. SAM files were converted to BAM files with SAMtools (Li et al., 2009).

\ \

Gene expression within GENCODE V7 (Harrow et al., 2006) gene models was estimated using Cufflinks v0.9.3 (Roberts et al., 2011). Estimates of transcript abundance were reported in Fragments Per Kilobase of exon per Million fragments mapped (FPKM). FPKM is calculated by dividing the total number of fragments that align to the gene model by the size of the spliced transcript (exons) in kilobases. This number is then divided by the total number of reads in millions for the experiment. FPKM is reported in the last column of the GTF (TranscriptGencV7) files.

\ \

Raw Data (fastQ), Raw Signal (bigWig), Alignments (BAM) and Transcript GENCODE V7 (GTF) files are available from the Downloads page.

\ \

Verification

\
    \
  • The mapped data were visually inspected to verify the majority of the reads fell within known exons.
    • \
  • Biological replicates confirm expression measurements with r > 0.90.\
\ \

Release Notes

\

\ Update (May 2012): the labels of the Raw Signal subtracks have been updated because they were originally labeled as Signals instead of Raw Signals.

\

This is the first NCBI Build37 (hg19) release of this track (Feb 2012).
\ This release includes the 3 datasets (Jurkat, A549/DEX100nm, and A549/EtOH2pct) previously released on NCBI Build36 (hg18) and adds data for several more cell types and growth conditions in replicate. Four types of download files are available for each replicate including the Raw Data (fastQ), Transcript GENCODE V7 (GTF), Raw Signal (bigWig), and Alignments (BAM).

\ \ \ \

Credits

\ \

These data were produced by the Dr. Richard Myers Lab at the HudsonAlpha Institute for Biotechnology.\ \

Contact: Dr. Florencia Pauli\ \ \ \

\ \

References

\ \

\ Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D et al.\ \ GENCODE: producing a reference annotation for ENCODE.\ Genome Biol. 2006;7 Suppl 1:S4.1-9.\

\ \

\ Langmead B, Trapnell C, Pop M, Salzberg SL.\ \ Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.\ Genome Biol. 2009;10(3):R25.\

\ \

\ Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup.\ \ The Sequence Alignment/Map format and SAMtools.\ Bioinformatics. 2009 Aug 15;25(16):2078-9.\

\ \

\ Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B.\ \ Mapping and quantifying mammalian transcriptomes by RNA-Seq.\ Nat Methods. 2008 Jul;5(7):621-8.\

\ \

\ Roberts A, Trapnell C, Donaghey J, Rinn JL, Pachter L.\ \ Improving RNA-Seq expression estimates by correcting for fragment bias.\ Genome Biol. 2011;12(3):R22.\

\ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

\ expression 1 boxedCfg on\ compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell treatment=treatment obtainedBy=obtainedBy\ dimensionZchecked rep1\ dimensions dimensionY=cellType dimensionX=treatment dimensionZ=rep\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line treatment=Treatment view=View replicate=Rep labExpId=Lab_Exp_ID dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileType=File_Type fileSize=Size dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ group expression\ longLabel RNA-seq from ENCODE/HAIB\ noInherit on\ priority 0\ shortLabel HAIB RNA-seq\ sortOrder cellType=+ treatment=+ rep=+ view=-\ subGroup1 view Views RawSignal=Raw_Signal Alignments=Alignments\ subGroup2 cellType Cell_Line t2A549=A549 (Tier_2) t2SKNSH=SK-N-SH (Tier_2) t3BE2C=BE2_C t3ECC1=ECC-1 t3JURKAT=Jurkat t3PANC1=PANC-1 t3PFSK1=PFSK-1 t3T47D=T-47D t3U87=U87\ subGroup3 treatment Treatment BPA14h=BPA_4hr_100nM DM002P4H=DMSO_4hr_0.02pct EST10NM4H=ESTRADIOL_4hr_10nM GEN4H=GENISTEIN_4hr_100nM DEX100NM=DEX_1hr_100nM DEX5NM=DEX_1hr_5nM DEX1NM=DEX_1hr_1nM DEX500PM=DEX_1hr_500pM DEX100PM=DEX_1hr_100pM ETOH02=ETOH_1hr_0.02pct zNONE=None\ subGroup4 rep Replicate rep1=1 rep2=2 rep3=3 rep4=4\ superTrack wgEncodeRnaSeqSuper dense\ track wgEncodeHaibRnaSeq\ type bed 3\ wgEncodeHaibTfbs HAIB TFBS bed 3 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

This track displays binding sites of the specified transcription factors in the given cell types as identified by chromatin immunoprecipitation followed by high-throughput sequencing\ (ChIP-seq — see Johnson et al., 2007 and Fields, 2007).\

\ \

\ ChIP-seq was used to assay chromatin fragments bound by specific or general transcription factors as described below.\ DNA enriched by chromatin immunoprecipitation was sequenced and short sequence reads of 25-36 nt were mapped to the human reference genome.\ Enriched regions (peaks) of high sequence read density relative to input chromatin control sequence reads were identified with a peak calling algorithm.\

\ \

\ The sequence reads with quality scores\ (fastq files)\ and alignment coordinates\ (BAM files)\ from these experiments are available for\ download.\

\ \

Display Conventions and Configuration

\ \

\ \ This track is a multi-view composite track that contains multiple data types\ (views).\ For each view, there are multiple subtracks that display individually on the browser.\ Instructions for configuring multi-view tracks are\ here.\ The subtracks in this track are grouped by transcription factor targeted antibody and by cell type.\ For each experiment\ (cell type vs. antibody),\ the following views are included:\ \

\
Peaks
\
\ Sites with the greatest evidence of transcription factor binding,\ calculated using the\ MACS\ peak caller (Zhang et al., 2008),\ as enriched regions of high read density in the ChIP experiment relative to total input chromatin control reads.\
\
Raw Signal
\
\ A continuous signal which indicates density of aligned reads.\ The sequence reads were extended to the size-selected length (225 bp),\ and the read density computed as reads per million.\
\
\ \

\ \ \

\ Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.\

\ \

Methods

\ \

\ Cells were grown according to the approved\ ENCODE cell culture protocols.\ Cross-linked chromatin was immunoprecipitated with an antibody,\ the protein-DNA crosslinks were reversed and the DNA fragments were recovered and sequenced.\ Please see protocol notes below and check\ here\ for the most current version of the protocol.\ Biological replicates from each experiment were completed.\

\ \

\ Libraries were sequenced with an Illumina Genome Analyzer I or IIx according to the manufacturer's recommendations.\ Sequence data produced by the Illumina data pipeline software were quality-filtered and then mapped to NCBI GRCh37 (hg19) using the integrated Eland software;\ 32 nt of the sequence reads were used for alignment.\ Up to two mismatches were tolerated; reads that mapped to multiple sites in the genome were discarded.\

\ \

\ To identify likely transcription factor occupancy sites,\ peak calling was applied to the aligned sequence data sets using\ MACS\ (Zhang et al., 2008).\ The MACS method models the shift size of ChIP-seq tags empirically,\ and uses the shift to improve the spatial resolution of predicted binding sites.\ The MACS method also uses a dynamic Poisson distribution to capture local biases in the genome,\ allowing for more robust predictions\ (Zhang et al., 2008).\

\ \

Protocol Notes

\ \

\ Several changes and improvements were made to the original ChIP-seq protocol\ (Jonshon et al., 2008).\ The major differences between protocols are the number of cells and magnetic beads used for IP,\ the method of sonication used to fragment DNA,\ the method used for fragment size selection,\ and the number of cycles of PCR used to amplify the sequencing library.\ The protocol field for each file denotes the version of the protocol used as being PCR1x,\ PCR2x or a version number (e.g., v041610.1).\

\ \

\ The sequencing libraries labeled as PCR2x were made with two rounds of amplification\ (25 and 15 cycles)\ and those labeled as PCR1x were made with one 15-cycle round of amplification.\ Experiments that were completed prior to January 2010 were originally aligned to NCBI36 (hg18).\ They have been re-aligned to NCBI GRCh37 (hg19) with the\ Bowtie\ software (Langmead et al., 2009)\ for this data release.\ The libraries labeled with a protocol version number were competed after January 2010\ and were only aligned to NCBI GRCh37 (hg19).\

\ \

\ Please refer to the\ Myers Lab website\ for details on each protocol version and the most current protocol in use.\

\ \

Verification

\ \

\ The\ MACS\ peak caller was used to call significant peaks on the individual replicates of a ChIP-seq experiment.\ Next, the irreproducible discovery rate (IDR) method\ developed by Li et al. (2011),\ was used to quantify the consistency between pairs of ranked peaks lists from replicates.\ The IDR methods uses a model that assumes that the ranked lists of peaks in a pair of replicates consist of two groups:\ a reproducible group and an irreproducible group.\ In general, the signals in the reproducible group are more consistent\ (i.e. with a larger rank correlation coefficient)\ and are ranked higher than the irreproducible group.\ The proportion of peaks that belong to the irreproducible component\ and the correlation of the reproducible component are estimated adaptively from the data.\ The model also provides an IDR score for each peak,\ which reflects the posterior probability of the peak belonging to the irreproducible group.\ The aligned reads were pooled from all replicates\ and the MACS peak caller was used to call significant peaks on the pooled data.\ Only datasets containing at least 100 peaks passing the IDR threshold were considered valid and submitted for release.\

\ \

\ As part of the validation of ChIP-seq antibodies\ and to study the downstream targets of several transcription factors,\ inducible short hairpin RNA (shRNA) cell lines were generated to knock down the expression of these factors.\ K562 cells (non-adherent, human erythromyeloblastoid leukemia cell line; ENCODE Tier 1)\ were transduced with lentiviral vectors carrying an inducible shRNA to a specific transcription factor as described in this\ protocol.\ Expression of shRNA was induced with doxycycline in the growth media.\ Only cell lines that exhibited at least 70% reduction in expression of the targeted transcription factor\ (determined by qPCR) were used.\ The cell lines were designated K562-shX,\ where X is the transcription factor targeted by shRNA and K562 denotes the parent cell line.\ For example, K562-shATF3 cells are K562 cells selected for stable integration of shRNA targeting the ATF3 gene.\ Gene expression in doxycycline-induced and uninduced cells were measured and profiled using RNA-seq.\ The RNA-seq data were submitted to GEO\ (Accession:GSE33816).\

\ \

Release Notes

\ \

\

    \
  • This is Release 3 (Sept 2012). It contains 110 new experiments including 3 new cell lines and 1 new antibodies.
    • \
  • The entire HepG2/HEY1 (Accession: wgEncodeEH001502) and K562/HEY1 (Accession: wgEncodeEH001481) datasets have been revoked due to problems with the quality of the antibody.
    • \
  • All experiments with the U87 cell line were remapped. Previously, the sex of the cell was unknown and was mapped to the male genome. It was discovered that the cell line is female.
    • \
  • Other files from the previous releases also contained errors. They have been corrected with a version number appended to the name (e.g., V2).
    • \
  • shRNA validation data have been included in previous releases. The Verification section above provides a more in-depth explanation of the method.
    • \
\

\ \

Credits

\ \

\ These data were provided by the\ Myers Lab\ at the\ HudsonAlpha Institute for Biotechnology.\

\ \

\ Contact:\ Flo Pauli\ \

\ \

References

\ \

\ Fields S.\ \ Molecular biology. Site-seeing by sequencing.\ Science. 2007 Jun 8;316(5830):1441-2.\

\ \

\ Johnson DS, Mortazavi A, Myers RM, Wold B.\ \ Genome-wide mapping of in vivo protein-DNA interactions.\ Science. 2007 Jun 8;316(5830):1497-502.\

\ \

\ Langmead B, Trapnell C, Pop M, Salzberg SL.\ \ Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.\ Genome Biol. 2009;10(3):R25.\

\ \

\ Li Q, Brown JB, Huang H, Bickel PJ.\ \ Measuring Reproducibility of High-throughput experiments.\ Ann. Appl. Stat. Volume 5, Number 3 (2011), 1752-1779.\

\ \

\ Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W et al.\ \ Model-based analysis of ChIP-Seq (MACS).\ Genome Biol. 2008;9(9):R137.\

\ \

Data Release Policy

\ \

\ Data users may freely use ENCODE data, but may not, without prior consent, submit publications that use an unpublished ENCODE dataset until nine months following the release of the dataset. This date is listed in the Restricted Until column, above. The full data release policy for ENCODE is available\ here.

\ regulation 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell factor=antibody protocol=protocol treatment=treatment\ dimensionAchecked PCR1x,PCR2x,V0416101,V0416102,V0422111\ dimensionBchecked NONE\ dimensionCchecked rep1,rep2\ dimensions dimX=cellType dimY=factor dimA=protocol dimB=treatment dimC=rep\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line antibody=Antibody
Target protocol=Protocol treatment=Treatment replicate=Rep view=View labExpId=Lab_ID controlId=Control_ID setType=Type dccAccession=UCSC_Accession geoSampleAccession=GEO
Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ filterComposite dimB=all dimC=multi\ group regulation\ html wgEncodeHaibTfbs.release3\ longLabel Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB\ nextItemButton on\ noInherit on\ priority 0\ shortLabel HAIB TFBS\ sortOrder cellType=+ factor=+ treatment=+ protocol=+ rep=+ view=+\ subGroup1 view Views Peaks=Peaks RawSignal=Raw_Signal\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2A549=A549 (Tier_2) t2H1NEURONS=H1-neurons (Tier_2) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2MCF7=MCF-7 (Tier_2) t2SKNSH=SK-N-SH (Tier_2) t3ECC1=ECC-1 t3GM12891=GM12891 t3GM12892=GM12892 t3HCT116=HCT-116 t3HL60=HL-60 t3PANC1=PANC-1 t3PFSK1=PFSK-1 t3SKNMC=SK-N-MC t3SKNSHRA=SK-N-SH_RA t3T47D=T-47D t3U87=U87\ subGroup3 factor Factor ATF2SC81188=ATF2_(SC81188) ATF3=ATF3 BATF=BATF BCL11A=BCL11A BCL3=BCL3 BCLAF101388=BCLAF1_(SC-101388) BHLHE40=BHLHE40 CBX3SC101004=CBX3_(SC-101004) CEBPB=CEBPB CEBPDSC636=CEBPD_(SC-636) CREB1SC240=CREB1_(SC-240) CTCF=CTCF CTCFSC5916=CTCF_(SC-5916) CTCFLSC98982=CTCFL_(SC-98982) E2F6=E2F6 EBF1SC137065=EBF1_(SC-137065) EGR1=Egr-1 ELF1SC631=ELF1_(SC-631) ERAA=ERα_a ETS1=ETS1 FOSL1SC183=FOSL1_(SC-183) FOSL2=FOSL2 FOXA1SC6553=FOXA1_(SC-6553) FOXA1SC101058=FOXA1_(SC-101058) FOXA2SC6554=FOXA2_(SC-6554) FOXM1SC502=FOXM1_(SC-502) FOXP2=FOXP2 GABP=GABP GATA2SC267=GATA2_(SC-267) GATA3SC268=GATA3_(SC-268) GR=GR HDAC2SC6296=HDAC2_(SC-6296) HNF4ASC8987=HNF4A_(SC-8987) HNF4GSC6558=HNF4G_(SC-6558) IRF4SC6059=IRF4_(SC-6059) JUND=JunD MAX=Max MBD4SC271530=MBD4_(SC-271530) MEF2A=MEF2A MEF2CSC13268=MEF2C_(SC-13268) MTA3SC81325=MTA3_(SC-81325) MYBL2SC81192=MYBL2_(SC-81192) NANOGSC33759=NANOG_(SC-33759) NFATC1SC17834=NFATC1_(SC-17834) NFICSC81335=NFIC_(SC-81335) NR2F2SC271940=NR2F2_(SC-271940) NRSF=NRSF P300=p300 PAX5C20=PAX5-C20 PAX5N19=PAX5-N19 PBX3=PBx3 PMLSC71910=PML_(SC-71910) POL2=Pol2 POL24H8=Pol2-4H8 POU2F2=POU2F2 POU5F1SC9081=POU5F1_(SC-9081) PU1=PU.1 RAD21=RAD21 RUNX3SC101553=RUNX3_(SC-101553) RXRA=RXRA SIN3AK20=Sin3Ak-20 SIX5=SIX5 SP1=SP1 SP2SC643=SP2_(SC-643) SP4V20=SP4_(V-20) SRF=SRF STAT5ASC74442=STAT5A_(SC-74442) TAF1=TAF1 TAF7SC101167=TAF7_(SC-101167) TCF3=TCF3 TCF12=TCF12 TEAD4SC101184=TEAD4_(SC-101184) THAP1SC98174=THAP1_(SC-98174) TRIM28SC81411=TRIM28_(SC-81411) USF1=USF-1 USF1SC8983=USF1_(SC-8983) YY1=YY1 YY1SC281=YY1_(SC-281) ZBTB33=ZBTB33 ZBTB7ASC34508=ZBTB7A_(SC-34508) ZEB1SC25388=ZEB1_(SC-25388) zRXLCH=RevXlinkChromatin\ subGroup4 protocol Protocol PCR1X=PCR1x PCR2X=PCR2x V0416101=v041610.1 V0416102=v041610.2 V0422111=v042211.1\ subGroup5 treatment Treatment BPA1H=BPA_1h DEX500PM=DEX_500pM DEX5NM=DEX_5nM DEX50NM=DEX_50nM DEX100NM=DEX_100nM DM002P1H=DMSO_0.02pct EST10NM1H=Estradiol_10nM ETOH02=EtOH_0.02pct GEN1H=Genistein_100nM NONE=None\ subGroup6 rep Replicate rep1=1 rep2=2 rep3=3 rep4=4 rep5=5\ superTrack wgEncodeTfBindingSuper hide\ track wgEncodeHaibTfbs\ type bed 3\ decipherHaploIns Haploinsufficiency bigBed 9 + Haploinsufficiency predictions for genes from DECIPHER 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This track displays haploinsufficiency predictions for human genes (Huang 2010).\ Human cells have two copies of most genes (one from each parent). If a mutation\ alters one copy, the other is usually still sufficient to maintain gene function.\ For haploinsufficient genes, however, both copies must be functioning for the\ organism to have a normal life. Haploinsufficiency is implicated in a number of\ health disorders. \

\ \

Display Conventions

\

\ Predictions in this track are provided on a per-gene basis and are displayed in blocks\ corresponding to each gene's position in the genome (and labeled with that gene's name).\ The raw prediction scores range from 0 to 1, where 0 is very unlikely to be\ haploinsufficient and 1 is very likely. Because many of the predicted scores fall toward\ the lower end of the spectrum, the authors also grouped those scores by quantile. The\ quantile for each gene is shown as α-upper percentile, which shows the percentage\ of genes with a higher predicted score than this one. A gene with a relatively strong\ prediction of being haploinsufficient will have a quantile close to 0%. A gene with a very low\ comparative prediction of being haploinsufficient will have a quantile close to 100%.\

\ Moving the mouse cursor over any gene will display a pop-up box with the gene name\ and α-upper quantile for the prediction. The genes in this track\ are also color-coded according to quantile:\

    \
  • Magenta shades indicate a higher\ expectation of being haploinsufficient
    • \
  • Green shades indicate a lower\ expectation of being haploinsufficient
    • \
\

\ \

Credits

\

\ Data for this track were generously provided by the DECIPHER project at\ https://decipher.sanger.ac.uk/about/downloads/data.\

\ \

References

\

\ Huang N, Lee I, Marcotte EM, Hurles ME.\ \ Characterising and predicting haploinsufficiency in the human genome.\ PLoS Genet. 2010 Oct 14;6(10):e1001154.\ PMID: 20976243; PMC: PMC2954820\

\ phenDis 1 bigDataUrl /gbdb/hg19/bbi/haploins/haploinsufficiency.bb\ group phenDis\ itemRgb on\ longLabel Haploinsufficiency predictions for genes from DECIPHER\ mouseOver $name, HI: $quantile\ noScoreFilter on\ shortLabel Haploinsufficiency\ skipFields mouseOver\ track decipherHaploIns\ type bigBed 9 +\ otherMaps HapMap bigWig -1.0 111.0 HapMap Release 24 recombination maps 0 100 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 0 longLabel HapMap Release 24 recombination maps\ parent decodeRmap\ shortLabel HapMap\ track otherMaps\ type bigWig -1.0 111.0\ view other\ visibility hide\ hapmapSnps HapMap SNPs bed 6 + HapMap SNPs (rel27, merged Phase II + Phase III genotypes) 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ The HapMap Project\ identified a set of approximately four million\ common SNPs, and genotyped these SNPs in four populations in Phase II of the \ project. In Phase III, it genotyped approximately 1.4 to 1.5 million SNPs \ in eleven populations. This track shows the combined data from Phases II and III.\ The intent is that this data can be used as a reference for future studies\ of human disease. This track displays the genotype counts and allele\ frequencies of those SNPs, and (when available) shows orthologous alleles \ from the chimp and macaque reference genome assemblies.\

\

\ The four million HapMap Phase II SNPs were genotyped on individuals \ from these four human populations:\

\ Phase III expanded to eleven populations: the four above, plus the following:\ \ Each of the populations is displayed in a separate subtrack.\

\

\ The HapMap assays provide biallelic results. Over 99.8% of HapMap SNPs are\ described as biallelic in \ dbSNP build 129; \ approximately 6,800 are described as more complex types (in-del, mixed, etc).\ 70% of the HapMap SNPs are transitions: 35% are A/G, 35% are C/T.\

\

\ The orthologous alleles in chimp (panTro2) and macaque (rheMac2) \ were derived using \ liftOver.\

\

\ No two HapMap SNPs occupy the same position. Aside from 430 SNPs from the \ pseudoautosomal region of chrX and chrY, no SNP is mapped to more than one \ location in the reference genome. \ No HapMap SNPs occur on "random" chromosomes (concatenations\ of unordered and unoriented contigs).\

\ \

Display Conventions and Configuration

\

\ Note: calculation of heterozygosity has changed since the Phase II (rel22)\ version of this track. \ Observed heterozygosity is calculated as follows: each population's\ heterozygosity is computed as the proportion of heterozygous individuals in \ the population. The population heterozygosities are averaged to determine the \ overall observed heterozygosity. \ [For Phase II genotypes, expected heterozygosity was calculated \ as follows: the allele counts from all populations were summed \ (not normalized for population size)\ and used to determine overall major and minor allele frequencies. \ Assuming Hardy-Weinberg equilibrium, overall expected heterozygosity\ was calculated as two times the product of major and minor allele\ frequencies \ (see Modern Genetic Analysis, section 17-2).]\

\

\ The human SNPs are displayed in gray using a color gradient based on minor allele\ frequency. The higher the minor allele frequency, the darker the display. \ By definition, the maximum minor allele frequency is 50%. \ When zoomed to base level, the major allele is displayed for each population. \

\

\ The orthologous alleles from chimp and macaque are displayed in brown using a color \ gradient based on quality score.\ Quality scores range from 0 to 100 representing low to high quality. For \ orthologous alleles, the higher the quality, the darker the display. Quality \ scores are not available for chimp chromosomes chr21 and chrY; these were set to\ 98, consistent with the panTro2 browser quality track.\

\

\ Filters are provided for the data attributes described above. Additionally,\ a filter is provided for observed heterozgosity (average of all populations'\ observed heterozygosities).\ Filters are applied to all subtracks, even if a subtrack is not displayed.\

\ Notes on orthologous allele filters:\

    \
  • If a SNP's major allele is different between populations, no overall major\ allele for human is determined, thus the "matches major human allele"\ and "matches minor human allele" filters for\ orthologous alleles do not apply.
    • \
  • If a SNP is monomorphic in all populations, the minor allele is not\ verified in the HapMap dataset. In these cases, the filter to match\ orthologous alleles to the minor human allele will yield no results.
    • \
\

\ \

Credits

\

\ This track is based on \ International HapMap Project release 27 data, provided by the HapMap Data Coordination\ Center. \

\ \

References

\ \

HapMap Project

\

\ The International HapMap Consortium. \ A second generation human haplotype map of over 3.1 million SNPs.\ Nature. 2007 Oct 18;449(7164):851-61.

\

\ The International HapMap Consortium.\ A haplotype map of the human genome.\ Nature. 2005 Oct 27;437(7063):1299-320.

\

\ The International HapMap Consortium.\ The International HapMap Project.\ Nature. 2003 Dec 18;426(6968):789-96.

\ \

HapMap Data Coordination Center

\

\ Thorisson GA, Smith AV, Krishnan L, Stein LD.\ The International HapMap Project Web site.\ Genome Res. 2005 Nov;15(11):1592-3.

\ \

A Sampling of HapMap Literature

\

\ Gibson J, Morton NE, Collins A.\ Extended tracts of homozygosity in outbred human populations.\ Hum Mol Genet. 2006 Mar 1; 15(5):789-95.\

\

\ Redon R, Ishikawa S, Fitch KR, Feuk L, Perry GH, Andrews TD, Fiegler H, Shapero\ MH, Carson AR, Chen W et al.\ Global variation in copy number in the human genome.\ Nature. 2006 Nov 23;444(7118):444-454.\

\ Spielman RS, Bastone LA, Burdick JT, Morley M, Ewens WJ, Cheung VG.\ Common genetic variants account for differences in gene\ expression among ethnic groups. Nature Genet. 2007\ Feb;39(2):226-31.\

\

\ Tenesa A, Navarro P, Hayes BJ, Duffy DL, Clarke GM, Goddard ME, Visscher PM.\ Recent human effective population size estimated from linkage\ disequilibrium. Genome Res. 2007 Apr;17(4):520-6.\

\ Voight BF, Kudaravalli S, Wen X, Pritchard JK.\ A Map of Recent Positive Selection in the Human Genome.\ PLoS Biol. 2006 Mar;4(3):e72.

\

\ Weir BS, Cardon LR, Anderson AD, Nielsen DM, Hill WG.\ Measures of human population structure show heterogeneity among genomic\ regions. Genome Res. 2005 Nov;15(11):1468-76.\

\ \

Data Source

\

\ The genotypes_chr*_*_r27_nr.b36_fwd.txt.gz files from the\ HapMap FTP site were processed to make this track.\

\ varRep 1 compositeTrack on\ configureByPopup off\ dataVersion rel27\ exonArrows off\ group varRep\ hapmapPhase III\ longLabel HapMap SNPs (rel27, merged Phase II + Phase III genotypes)\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel HapMap SNPs\ track hapmapSnps\ type bed 6 +\ visibility hide\ gnomADPextHeart_AtrialAppendage Heart-Atrial Appendage bigWig 0 1 gnomAD pext Heart-Atrial Appendage 0 100 153 0 255 204 127 255 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Heart_AtrialAppendage.bw\ color 153,0,255\ longLabel gnomAD pext Heart-Atrial Appendage\ parent gnomadPext off\ shortLabel Heart-Atrial Appendage\ track gnomADPextHeart_AtrialAppendage\ visibility hide\ gnomADPextHeart_LeftVentricle Heart-Left Ventricle bigWig 0 1 gnomAD pext Heart-Left Ventricle 0 100 102 0 153 178 127 204 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Heart_LeftVentricle.bw\ color 102,0,153\ longLabel gnomAD pext Heart-Left Ventricle\ parent gnomadPext off\ shortLabel Heart-Left Ventricle\ track gnomADPextHeart_LeftVentricle\ visibility hide\ hg19ContigDiff Hg18 Diff bed 9 . Contigs New to GRCh37/(hg19), Not Carried Forward from NCBI Build 36(hg18) 0 100 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/nuccore/$$

Description

\

\ This track shows the differences between the GRCh37 (hg19) and previous NCBI Build 36 (hg18)\ human genome assemblies, indicating contigs (or portions of contigs) that are new\ to the hg19 assembly.\

\ \

\ The following color/score key is used:\
\
\ \ \ \ \ \
colorscorechange from hg18 to hg19
 0New contig added to hg19 to \ update sequence or fill gaps present in hg18
 500Different portions of this \ same contig used in the construction of hg19 and hg18 assemblies
 1000Updated version of\ an hg18 contig in which sequence errors have been corrected
\

\

\ Use the score filter to select which categories to show in the display.\

\ \

Methods

\

\ The contig coordinates were extracted from the AGP files for both assemblies.\ Contigs that matched the same name, same version, and the same specific\ portion of sequence in both assemblies were considered identical between the two\ assemblies and were excluded from this data set. The remaining contigs are shown\ in this track.\

\ \

Credits

\

\ The data and presentation of this track were prepared by\ Hiram Clawson, UCSC Genome\ Browser engineering.\

\ map 1 color 0,0,0\ group map\ itemRgb on\ longLabel Contigs New to GRCh37/(hg19), Not Carried Forward from NCBI Build 36(hg18)\ scoreFilterByRange on\ shortLabel Hg18 Diff\ track hg19ContigDiff\ type bed 9 .\ url https://www.ncbi.nlm.nih.gov/nuccore/$$\ urlLabel Genbank accession:\ visibility hide\ hg38ContigDiff Hg38 Diff bed 9 . Contigs Dropped or Changed from GRCh37(hg19) to GRCh38(hg38) 0 100 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/nuccore/$$

Description

\

\ This track shows the differences between the GRCh37 (hg19) and GRCh38 (hg38) human genome \ assemblies, indicating hg19 contigs (or portions of contigs) that were not carried forward to the \ newer assembly.\

\ \

\ The following color/score key is used:\
\
\ \ \ \ \ \
item
color		item
score		type of change from hg19 to hg38
 0hg19 contig dropped in\ the construction of the hg38 assembly
 500Different portions\ of this same contig used in the construction of hg38 and hg19 assemblies
 1000Contig updated in hg38 to \ correct sequence errors present in hg19 version
\

\

\ Use the score filter to select which categories to show in the display.\

\ \

Methods

\

\ The contig coordinates were extracted from the AGP files for both assemblies.\ Contigs that matched the same name, same version, and the same specific\ portion of sequence in both assemblies were considered identical between the two\ assemblies and were excluded from this data set. The remaining contigs are shown\ in this track.\

\ \

Credits

\

\ The data and presentation of this track were prepared by\ Hiram Clawson, UCSC Genome\ Browser engineering.\

\ map 1 color 0,0,0\ group map\ itemRgb on\ longLabel Contigs Dropped or Changed from GRCh37(hg19) to GRCh38(hg38)\ scoreFilterByRange on\ shortLabel Hg38 Diff\ track hg38ContigDiff\ type bed 9 .\ url https://www.ncbi.nlm.nih.gov/nuccore/$$\ urlLabel Genbank accession:\ visibility hide\ hgdpGeo HGDP Allele Freq bed 4 + Human Genome Diversity Project SNP Population Allele Frequencies 0 100 0 0 0 127 127 127 0 0 0 http://hgdp.uchicago.edu/cgi-bin/gbrowse/HGDP/?name=$$

Description

\

\ This track shows the 657,000 SNPs genotyped in 53 populations worldwide by the \ Human\ Genome Diversity Project in collaboration with the\ Centre d'Etude\ du Polymorphisme Humain (HGDP-CEPH).\ This track and several others are available from the \ HGDP Selection Browser.\

\ \

Methods

\

\ Samples collected by the HGDP-CEPH from 1,043 individuals from around the\ world were genotyped for 657,000 SNPs at\ Stanford.\ Ancestral states for all SNPs were estimated using whole genome\ human-chimpanzee alignments from the UCSC database.\ For each SNP in the human genome (NCBI Build 35, UCSC database hg17), the \ allele at the corresponding position in the chimp genome (Build 2 version 1,\ UCSC database pantro2) was used as ancestral.\

\

\ Allele frequencies were plotted on a world map using programs included in the\ Generic Mapping Tools.\

\ \

Credits

\

\ Thanks to the HGDP-CEPH, the Pritchard lab at Stanford University, Joe\ Pickrell and John Novembre for sharing the data and plotting scripts \ for this track.\

\ \ \

References

\

\ Cann HM, de Toma C, Cazes L, Legrand MF, Morel V, Piouffre L, Bodmer J, Bodmer WF, Bonne-Tamir B,\ Cambon-Thomsen A et al.\ \ A human genome diversity cell line panel.\ Science. 2002 Apr 12;296(5566):261-2.\ PMID: 11954565\

\ \

\ Li JZ, Absher DM, Tang H, Southwick AM, Casto AM, Ramachandran S, Cann HM, Barsh GS, Feldman M,\ Cavalli-Sforza LL et al.\ \ Worldwide human relationships inferred from genome-wide patterns of variation.\ Science. 2008 Feb 22;319(5866):1100-4.\ PMID: 18292342\

\ \

\ Pickrell JK, Coop G, Novembre J, Kudaravalli S, Li JZ, Absher D, Srinivasan BS, Barsh GS, Myers RM,\ Feldman MW et al.\ \ Signals of recent positive selection in a worldwide sample of human populations.\ Genome Res. 2009 May;19(5):826-37.\ PMID: 19307593; PMC: PMC2675971\

\ \

\ Wessel P, Smith WHF.\ \ New, improved version of Generic Mapping Tools released.\ EOS, Trans. Amer. Geophys. U. 1998;79(47):579.

\ varRep 1 group varRep\ longLabel Human Genome Diversity Project SNP Population Allele Frequencies\ shortLabel HGDP Allele Freq\ track hgdpGeo\ type bed 4 +\ url http://hgdp.uchicago.edu/cgi-bin/gbrowse/HGDP/?name=$$\ urlLabel HGDP Selection Browser:\ visibility hide\ hgmd HGMD public bigBed 9 . Human Gene Mutation Database - Public Version Dec 2023 0 100 0 0 0 127 127 127 0 0 0 http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$P&accession=$p

Description

\ \
\

NOTE:
\ HGMD public is intended for use primarily by physicians and other\ professionals concerned with genetic disorders, by genetics researchers, and\ by advanced students in science and medicine. While the HGMD public database is\ open to all academic users, users seeking information about a personal medical\ or genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal questions.

\

DOWNLOADS:
\ As requested by Qiagen, this track is not available for download or mirroring but only for limited API queries, see below.\

\ \

\ This track shows the genomic positions of variants in the public version of the\ Human Gene Mutation Database (HGMD). \ UCSC does not host any further information and provides only the coordinates of\ mutations.\

\ \

\ To get details on a mutation (bibliographic reference, phenotype,\ disease, nucleotide change, etc.), follow the "Link to HGMD" at the top\ of the details page. Mouse over to show the type of variant (substitution, insertion,\ deletion, regulatory or splice variant). For deletions, only start coordinates are shown\ as the end coordinates have not been provided by HGMD. Insertions are located between the two\ annotated nucleic acids.\

\ \

\ The HGMD public database is produced at Cardiff University, but is free only\ for academic use. Academic users can register for a free account at the\ HGMD\ User Registration page. Download and commercial use requires a license for the HGMD Professional\ database, which also contains many mutations not yet added to the public version of HGMD public.\ The public version is usually 1-2 years behind the professional version.\

\ \

The HGMD database itself does not come with a mapping to genome coordinates,\ but there is a related product called "GenomeTrax" which includes HGMD in the\ UCSC Custom Track format. Contact Qiagen for more information.

\ \

Batch queries

\

Due to license restrictions, the HGMD data is not available for download or for batch queries in the Table Browser. \ However, it is available for programmatic access via the Global\ Alliance Beacon API, a web service that accepts queries in the form\ (genome, chromosome, position, allele) and returns "true" or "false" depending on whether there\ is information about this allele in the database. For more details see our \ Beacon Server.

\

Subscribers of the HGMD database can also download the full database or use the HGMD API to retrieve full details, please contact Qiagen support\ for further information. Academic or non-profit users may be able to obtain a\ limited version of HGMD public from Qiagen.

\ \

Display Conventions and Configuration

\ \

\ Genomic locations of HGMD variants are labeled with the gene symbol\ and the accession of the mutation, separated by a colon. All other information\ is shown on the respective HGMD variation page, accessible via the\ "Link to HGMD" at the top of the details page.\

\ \

HGMD variants are originally annotated on RefSeq transcripts. You can show\ all and only those transcripts annotated by HGMD by activating the HGMD\ subtrack of the track "NCBI RefSeq".

\ \

Methods

\ \

\ The mappings displayed on this track were obtained from Qiagen\ and reformatted at UCSC as a bigBed file.\

\ \

Credits

\ \

\ Thanks to HGMD, Frank Schacherer and Rupert Yip from Qiagen for making these data available.\

\ \

References

\ \

\ Stenson PD, Mort M, Ball EV, Shaw K, Phillips A, Cooper DN.\ \ The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and\ molecular genetics, diagnostic testing and personalized genomic medicine.\ Hum Genet. 2014 Jan;133(1):1-9.\ PMID: 24077912; PMC: PMC3898141\

\ phenDis 1 bigDataUrl /gbdb/hg19/bbi/hgmd.bb\ group phenDis\ itemRgb on\ longLabel Human Gene Mutation Database - Public Version Dec 2023\ maxItems 1000\ maxWindowCoverage 10000000\ mouseOverField variantType\ noScoreFilter on\ shortLabel HGMD public\ tableBrowser off hgmd\ track hgmd\ type bigBed 9 .\ url http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$P&accession=$p\ urlLabel Link to HGMD\ visibility hide\ hgnc HGNC bigBed 9 + HUGO Gene Nomenclature 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ The HGNC is \ responsible for approving unique symbols and names for human loci, including protein \ coding genes, ncRNA genes and pseudogenes, to allow unambiguous scientific communication.\

\ For each known human gene, the HGNC approves a gene name and symbol (short-form abbreviation).\ All approved symbols are stored in the HGNC database, www.genenames.org, a curated online repository of HGNC-approved gene \ nomenclature, gene groups and associated resources including links to genomic, proteomic, \ and phenotypic information. Each symbol is unique and we ensure that each gene is only \ given one approved gene symbol. It is necessary to provide a unique symbol for each gene \ so that we and others can talk about them, and this also facilitates electronic data \ retrieval from publications and databases. In preference, each symbol maintains \ parallel construction in different members of a gene family and can also be \ used in other species, especially other vertebrates including mouse.\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser, or the Data Integrator. For computational analysis, genome annotations are stored in\ a bigBigFile file that can be downloaded from the\ download\ server. Regional or genome-wide annotations can be converted from binary data to human readable\ text using our command line utility bigBedToBed which can be compiled from source code or\ downloaded as a precompiled binary for your system. Files and instructions can be found in the\ utilities directory.\ \ The utility can be used to obtain features within a given range, for example:

\ bigBedToBed -chrom=chr6 -start=0 -end=1000000 http://hgdownload.soe.ucsc.edu/gbdb/hg38/hgnc/hgnc.bb stdout\ \

\ \

\ Please refer to our Data Access FAQ\ for more information or our mailing list for archived user questions.

\ \

Credits

\

\ HGNC Database, HUGO Gene Nomenclature Committee (HGNC), European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom www.genenames.org.\ \

References

\

\ Tweedie S, Braschi B, Gray KA, Jones TEM, Seal RL, Yates B, Bruford EA. Genenames.org: the HGNC and VGNC resources in 2021. Nucleic Acids Res. PMID: 33152070 PMCID: PMC7779007 DOI: 10.1093/nar/gkaa980\

\ genes 1 bigDataUrl /gbdb/hg19/hgnc/hgnc.bb\ defaultLabelFields symbol\ filterValues.locus_type RNA Y,RNA cluster,RNA long non-coding,RNA micro,RNA misc,RNA ribosomal,RNA small nuclear,RNA small nucleolar,RNA transfer,RNA vault,T cell receptor gene,T cell receptor pseudogene,complex locus constituent,endogenous retrovirus,fragile site,gene with protein product,immunoglobulin gene,immunoglobulin pseudogene,locus_type,protocadherin,pseudogene,readthrough,region,unknown,virus integration site,\ group genes\ itemRgb on\ labelFields symbol, geneName, name, uniprot_ids, ensembl_gene_id, ucsc_id, refseq_accession\ longLabel HUGO Gene Nomenclature\ mouseOver Symbol:$symbol; $name, Alias symbol: $alias_symbol; Previous symbols:$prev_symbol\ noScoreFilter on\ searchIndex name\ searchTrix /gbdb/hg19/hgnc/search.ix\ shortLabel HGNC\ skipEmptyFields on\ track hgnc\ type bigBed 9 +\ hiSeqDepth Hi Seq Depth bed 3 Regions of Exceptionally High Depth of Aligned Short Reads 0 100 139 69 19 197 162 137 0 0 0

Description

\

\ This track displays regions of the reference genome that have exceptionally high\ sequence depth, inferred from alignments of short-read sequences from the\ 1000 Genomes Project.\ These regions may be caused by collapsed repetitive sequences\ in the reference genome assembly; they also have high read depth in assays such as\ ChIP-seq, and may trigger false positive calls from peak-calling algorithms.\ Excluding these regions from analysis of short-read alignments should reduce\ such false positive calls.\

\ \

Methods

\

\ Pickrell et al. downloaded sequencing reads for 57 Yoruba individuals\ from the 1000 Genomes Project's low-coverage pilot data, mapped them to the\ Mar. 2006 human genome assembly (NCBI36/hg18), computed the read depth for\ every base in the genome, and compiled a distribution of read depths.\ They then identified contiguous regions where read depth exceeded thresholds\ corresponding to the top 0.001, 0.005, 0.01, 0.05 and 0.1 of the per-base \ read depths, merging regions which fall within 50 bases of each other.\ The regions are available for download from\ http://eqtl.uchicago.edu/Masking/\ (see the\ readme file).\

\ \

Credits

\

\ Thanks to Joseph Pickrell at the University of Chicago for these data.\

\ \

References

\

\ Pickrell JK, Gaffney DJ, Gilad Y, Pritchard JK.\ \ False positive peaks in ChIP-seq and other sequencing-based\ functional assays caused by unannotated high copy number regions.\ Bioinformatics. 2011 Aug 1;27(15):2144-6. Epub 2011 Jun 19.\

\ map 1 altColor 0,0,0\ color 139,69,19\ compositeTrack on\ group map\ longLabel Regions of Exceptionally High Depth of Aligned Short Reads\ shortLabel Hi Seq Depth\ track hiSeqDepth\ type bed 3\ visibility hide\ wgEncodeUwDgfHmfRaw HMF Raw bigWig 1.000000 220489.000000 HMF DNaseI DGF Raw Signal from ENCODE/UW 0 100 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMF DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HMF Raw\ subGroups view=zRaw cellType=t3HMF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmfRaw\ type bigWig 1.000000 220489.000000\ wgEncodeUwAffyExonArrayHmvecdlyneoSimpleSignalRep2 HMVEC-dLy-Neo 2 broadPeak HMVEC-dLy-Neo Exon array Signal Rep 2 from ENCODE/UW 0 100 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMVEC-dLy-Neo Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMVEC-dLy-Neo 2\ subGroups cellType=t3HMVECDLYNEO rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHmvecdlyneoSimpleSignalRep2\ type broadPeak\ wgEncodeUwDnaseViewHot Hot Spots bed 3 + DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington 1 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington\ pValueFilter 0.0\ pValueFilterLimits 1:324\ parent wgEncodeUwDnase\ scoreFilter 0\ scoreFilterLimits 0:1000\ shortLabel Hot Spots\ track wgEncodeUwDnaseViewHot\ view Hot\ visibility dense\ hotView Hot Spots bed 4 deCODE recombination map, Female and Male hot spots, >= 10.0 1 100 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 1 longLabel deCODE recombination map, Female and Male hot spots, >= 10.0\ parent decodeRmap\ shortLabel Hot Spots\ track hotView\ type bed 4\ view hot\ visibility dense\ wgEncodeUwDgfViewHotspots Hotspots bed 3 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington 0 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel DNaseI Digital Genomic Footprinting from ENCODE/University of Washington\ maxWindowToDraw 250000000\ minGrayLevel 2\ pValueFilter 0.0\ pValueFilterLimits 1:324\ parent wgEncodeUwDgf\ scoreFilter 100\ scoreFilterLimits 100:1000\ shortLabel Hotspots\ track wgEncodeUwDgfViewHotspots\ view Hotspots\ visibility hide\ wgEncodeUwHistoneViewHot Hotspots bed 3 Histone Modifications by ChIP-seq from ENCODE/University of Washington 2 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Histone Modifications by ChIP-seq from ENCODE/University of Washington\ pValueFilter 0.0\ pValueFilterLimits 0:324\ parent wgEncodeUwHistone\ shortLabel Hotspots\ track wgEncodeUwHistoneViewHot\ view Hot\ visibility full\ wgEncodeUwTfbsViewHot Hotspots bed 3 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington 2 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington\ pValueFilter 0.0\ pValueFilterLimits 0:324\ parent wgEncodeUwTfbs\ shortLabel Hotspots\ track wgEncodeUwTfbsViewHot\ view Hot\ visibility full\ wgEncodeDukeAffyExonHsmmfshdSimpleSignalRep1 HSMM_FSHD 1 bigBed 6 + HSMM_FSHD Exon array Signal Rep 1 from ENCODE/Duke 0 100 0 0 0 127 127 127 1 0 0 expression 1 longLabel HSMM_FSHD Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HSMM_FSHD 1\ subGroups cellType=t3HSMMFSHD treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonHsmmfshdSimpleSignalRep1\ type bigBed 6 +\ wgEncodeHaibMethylRrbsHsmmtDukeSitesRep1 HSMMtube 1 bed 9 + HSMMtube Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMMtube Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HSMMtube 1\ subGroups cellType=t3HSMMTUBE obtainedBy=DUKE treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHsmmtDukeSitesRep1\ type bed 9 +\ wgEncodeUwHistoneHuvecH3k4me3StdRawRep2 HUVE H3K4M3 Sg 2 bigWig 1.000000 2673.000000 HUVEC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 100 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HUVE H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t2HUVEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k4me3StdRawRep2\ type bigWig 1.000000 2673.000000\ hgIkmc IKMC Genes Mapped bed 12 International Knockout Mouse Consortium Genes Mapped to Human Genome 0 100 0 0 0 127 127 127 0 0 0 http://www.mousephenotype.org/data/genes/$$

Description

\

\ This track shows genes targeted by \ International Knockout Mouse Consortium (IKMC)\ mapped to the human genome. IKMC is a \ collaboration to generate a public resource of mouse embryonic stem (ES)\ cells containing a null mutation in every gene in the mouse genome.\ Gene targets are color-coded by status:\

    \
  • Green: Reagent(s) Available
    • \
  • Yellow: In Progress
    • \
  • Blue: Not Started/On Hold
    • \
  • Black: Withdrawn/Problematic
    • \
\

\

\ The KnockOut Mouse Project Data\ Coordination Center (KOMP DCC) is the central database resource\ for coordinating mouse gene targeting within IKMC and provides\ web-based query and display tools for IKMC data. In addition, the\ KOMP DCC website provides a tool for the scientific community to\ nominate genes of interest to be knocked out by the KOMP initiative.

\ \

\ IKMC members include\

\ \ KOMP includes two production centers: \ CSD, a collaborative team at the Children's Hospital Oakland Research Institute\ (CHORI), the Wellcome Trust Sanger Institute and the University\ of California at Davis School of Veterinary Medicine, and \ a team at the VelociGene division of Regeneron Pharmaceuticals, Inc.\ EUCOMM includes 9 participating institutions.\ NorCOMM includes several participating institutions.\

\ \

Methods

\

\ Using complementary targeting strategies, the IKMC centers\ design and create targeting vectors, mutant ES cell lines and, to some\ extent, mutant mice, embryos or sperm. Materials are distributed to\ the research community.

\

\ The KOMP Repository\ archives, maintains, and distributes IKMC products. Researchers can\ order products and get product information from the\ Repository. Researchers can also express interest in products that are\ still in the pipeline. They will then receive email notification as\ soon as KOMP generated products are available for distribution.

\

\ The process for ordering EUCOMM materials can be found \ here.

\

\ The process for ordering TIGM materials can be found \ here.

\

\ Information on NorCOMM products and services can be found \ here.\

\ Genes were mapped to the human genome by IKMC.\

\ \

Credits

\

\ Thanks to the International Knockout Mouse Consortium, and Carol Bult in \ particular, for providing these data.

\ \

References

\

\ Austin CP, Battey JF, Bradley A, Bucan M, Capecchi M, Collins FS, Dove WF, Duyk G, Dymecki S, Eppig\ JT et al.\ \ The knockout mouse project.\ Nat Genet. 2004 Sep;36(9):921-4.\ PMID: 15340423; PMC: PMC2716027\

\ \

\ Collins FS, Finnell RH, Rossant J, Wurst W.\ \ A new partner for the international knockout mouse consortium.\ Cell. 2007 Apr 20;129(2):235.\ PMID: 17448981\

\ \

\ International Mouse Knockout Consortium, Collins FS, Rossant J, Wurst W.\ \ A mouse for all reasons.\ Cell. 2007 Jan 12;128(1):9-13.\ PMID: 17218247\

\ genes 1 exonNumbers off\ group genes\ itemRgb on\ longLabel International Knockout Mouse Consortium Genes Mapped to Human Genome\ mgiUrl http://www.informatics.jax.org/marker/$$\ mgiUrlLabel MGI Report:\ noScoreFilter .\ shortLabel IKMC Genes Mapped\ track hgIkmc\ type bed 12\ url http://www.mousephenotype.org/data/genes/$$\ urlLabel KOMP Data Coordination Center:\ visibility hide\ illuminaProbes Illumina WG-6 bed 12 . Alignments of Illumina WG-6 3.0 Probe Set 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This track displays the probes from the Illumina WG-6 3.0 BeadChip.\ The WG-6 BeadChip contains probes for the following set of RNA \ transcripts:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \
Probe sourceNumber of probesNumber of unique probe sources
RefSeq NM (well-established coding transcript)27,45422,435
RefSeq XM (provisional coding transcript)7,8707,518
RefSeq NR (well-established non-coding transcript)446358
RefSeq XR (provisional non-coding transcript)196190
UniGene ESTs12,83712,837
TOTAL48,80343,338
\

\ \

Display

\

\ The track shows the location of the probes on the genome after the RNAs\ they correspond to were all aligned to the genome using BLAT. Alignment\ scores range from 0 to 1000, where 1000 is a perfect score. In the \ display, darker browns are for higher-scoring alignments. \

\

Click on a probe track item to see detailed information about that probe ID.\ View the base-by-base alignment for that probe by clicking the \ "View Alignment" link on the details page.\

\ \

Methods

\

\ The probe set was collected from the NCBI \ GEO \ (Gene Expression Omnibus), and the\ 43,338 RNA sequences were collected from Genbank using NCBI's EUtils interface\ to Entrez. These RNAs were aligned to the genome using BLAT, and 43,224 of them\ aligned well to 46,432 locations on the genome. The single best alignment was\ used, except in 1,789 cases where the RNA mapped equally well to two or more \ locations. The probes were then aligned to their respective RNAs using BLAT,\ and if a good alignment resulted, the probe was then mapped through to the\ genome using the combination of the probe-on-RNA and the RNA-on-genome\ alignments. Of the 48,803 original probes, 40,852 map well\ through this procedure to 44,163 locations on the genome.\

\ expression 1 group expression\ longLabel Alignments of Illumina WG-6 3.0 Probe Set\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ pslTable illuminaProbesAlign\ seqTable illuminaProbesSeq\ shortLabel Illumina WG-6\ track illuminaProbes\ type bed 12 .\ visibility hide\ wgEncodeGisRnaPetImr90NucleusPapClusters IMR9 nucl pA+ bed 6 + IMR90 nucleus polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS 2 100 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 nucleus polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel IMR9 nucl pA+\ subGroups view=v1Clusters rep=rep1 rank=none cellType=bIMR90 cloned=Free localization=nucleus rnaExtract=PAP\ track wgEncodeGisRnaPetImr90NucleusPapClusters\ type bed 6 +\ ucscToINSDC INSDC bed 4 Accession at INSDC - International Nucleotide Sequence Database Collaboration 0 100 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/nuccore/$$

Description

\

\ This track associates UCSC Genome Browser chromosome names to accession\ names from the International Nucleotide Sequence Database Collaboration (INSDC).\

\ \

\ The data were downloaded from the NCBI assembly database.\

\ \

Credits

\

The data for this track was prepared by\ Hiram Clawson.\ \ map 1 group map\ longLabel Accession at INSDC - International Nucleotide Sequence Database Collaboration\ shortLabel INSDC\ track ucscToINSDC\ type bed 4\ url https://www.ncbi.nlm.nih.gov/nuccore/$$\ urlLabel INSDC link:\ visibility hide\ caddIns Insertions bigBed 9 + CADD 1.6 Score: Insertions - label is length of insertion 1 100 100 130 160 177 192 207 0 0 0

Description

\ \

This track collection shows Combined Annotation Dependent Depletion scores.\ CADD is a tool for scoring the deleteriousness of single nucleotide variants as\ well as insertion/deletion variants in the human genome.

\ \

\ Some mutation annotations\ tend to exploit a single information type (e.g., phastCons or phyloP for\ conservation) and/or are restricted in scope (e.g., to missense changes). Thus,\ a broadly applicable metric that objectively weights and integrates diverse\ information is needed. Combined Annotation Dependent Depletion (CADD) is a\ framework that integrates multiple annotations into one metric by contrasting\ variants that survived natural selection with simulated mutations.\

\ \

\ CADD scores strongly correlate with allelic diversity, pathogenicity of both\ coding and non-coding variants, experimentally measured regulatory effects,\ and also rank causal variants within individual genome sequences with a higher\ value than non-causal variants. \ Finally, CADD scores of complex trait-associated variants from genome-wide\ association studies (GWAS) are significantly higher than matched controls and\ correlate with study sample size, likely reflecting the increased accuracy of\ larger GWAS.\

\ \

\ A CADD score represents a ranking not a prediction, and no threshold is defined\ for a specific purpose. Higher scores are more likely to be deleterious: \ Scores are \ \ 

  10 * -log of the rank
\ \ so that variants with scores above 20 are \ predicted to be among the 1.0% most deleterious possible substitutions in \ the human genome. We recommend thinking carefully about what threshold is \ appropriate for your application.\

\ \

Display Conventions and Configuration

\

\ There are six subtracks of this track: four for single-nucleotide mutations,\ one for each base, showing all possible substitutions, \ one for insertions and one for deletions. All subtracks show the CADD Phred\ score on mouseover. Zooming in shows the exact score on mouseover, same\ basepair = score 0.0.

\

\ PHRED-scaled scores are normalized to all potential ~9 billion SNVs, and\ thereby provide an externally comparable unit for analysis. For example, a\ scaled score of 10 or greater indicates a raw score in the top 10% of all\ possible reference genome SNVs, and a score of 20 or greater indicates a raw\ score in the top 1%, regardless of the details of the annotation set, model\ parameters, etc.\

\

\ The four single-nucleotide mutation tracks have a default viewing range of\ score 10 to 50. As explained in the paragraph above, that results in\ slightly less than 10% of the data displayed. The \ deletion and insertion tracks have a default filter of 10-100, because they\ display discrete items and not graphical data.\

\ \

\ Single nucleotide variants (SNV): For SNVs, at every\ genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing \ the reference allele, e.g., A to A, is always set to zero.\

\

\ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and instead of an actual score, the tooltip text will show\ the average score of all nucleotides under the cursor. This is indicated by\ the prefix "~" in the mouseover. Averages of scores are not useful for any\ application of CADD.\

\ \

Insertions and deletions: Scores are also shown on mouseover for a\ set of insertions and deletions. On hg38, the set has been obtained from\ gnomAD3. On hg19, the set of indels has been obtained from various sources\ (gnomAD2, ExAC, 1000 Genomes, ESP). If your insertion or deleletion of interest\ is not in the track, you will need to use CADD's\ online scoring tool\ to obtain them.

\ \

Data access

\

\ CADD scores are freely available for all non-commercial applications from\ the CADD website.\ For commercial applications, see\ the license instructions there.\

\ \

\ The CADD data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ The files for this track are called a.bw, c.bw, g.bw, t.bw, ins.bb and del.bb. Individual\ regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\
\ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/cadd/a.bw stdout\
\ or\
\ bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/cadd/ins.bb stdout

\ \

Methods

\ \

\ Data were converted from the files provided on\ the CADD Downloads website,\ provided by the Kircher lab, using\ \ custom Python scripts, \ documented in our \ makeDoc files.\

\ \

Credits

\

\ Thanks to the CADD development team for providing precomputed data as simple tab-separated files.\

\ \

References

\

\ Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J.\ \ A general framework for estimating the relative pathogenicity of human genetic variants.\ Nat Genet. 2014 Mar;46(3):310-5.\ PMID: 24487276;\ PMC: PMC3992975\

\ \

\ Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M.\ \ CADD: predicting the deleteriousness of variants throughout the human genome.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894.\ PMID: 30371827;\ PMC: PMC6323892\

\ phenDis 1 bigDataUrl /gbdb/hg19/cadd/ins.bb\ filter.score 10:100\ filterByRange.score on\ filterLabel.score Show only items with PHRED scale score of\ filterLimits.score 0:100\ html caddSuper\ longLabel CADD 1.6 Score: Insertions - label is length of insertion\ mouseOver Mutation: $change CADD Phred score: $phred\ parent caddSuper\ shortLabel Insertions\ track caddIns\ type bigBed 9 +\ visibility dense\ wgEncodeGisChiaPetInteractions Interactions bed 12 Chromatin Interaction Analysis Paired-End Tags (ChIA-PET) from ENCODE/GIS-Ruan 2 100 0 0 0 127 127 127 1 0 0 regulation 1 canPack 1\ longLabel Chromatin Interaction Analysis Paired-End Tags (ChIA-PET) from ENCODE/GIS-Ruan\ parent wgEncodeGisChiaPet\ scoreFilter 200\ scoreFilterLimits 200:1000\ shortLabel Interactions\ track wgEncodeGisChiaPetInteractions\ type bed 12\ useScore 1\ view Interactions\ visibility full\ ghInteraction Interactions bigInteract GeneHancer Regulatory Elements and Gene Interactions 2 100 0 0 0 127 127 127 0 0 0 https://www.genecards.org/cgi-bin/carddisp.pl?gene=$&keywords=$&prefilter=enhancers#enhancers regulation 1 interactDirectional offsetTarget\ interactMultiRegion on\ longLabel GeneHancer Regulatory Elements and Gene Interactions\ maxHeightPixels 50:100:200\ parent geneHancer\ shortLabel Interactions\ track ghInteraction\ type bigInteract\ url https://www.genecards.org/cgi-bin/carddisp.pl?gene=$&keywords=$&prefilter=enhancers#enhancers\ urlLabel Interaction in GeneCards\ view c_I\ viewUi on\ visibility full\ nestedRepeats Interrupted Rpts bed 12 + Fragments of Interrupted Repeats Joined by RepeatMasker ID 0 100 0 0 0 127 127 127 1 0 0

Description

\ \

\ This track shows joined fragments of interrupted repeats extracted\ from the output of the \ RepeatMasker program which screens DNA sequences\ for interspersed repeats and low complexity DNA sequences using the\ \ Repbase Update library of repeats from the\ Genetic\ Information Research Institute (GIRI). Repbase Update is described in\ Jurka (2000) in the References section below.\

\ \

\ The detailed annotations from RepeatMasker are in the RepeatMasker track. This\ track shows fragments of original repeat insertions which have been interrupted\ by insertions of younger repeats or through local rearrangements. The fragments\ are joined using the ID column of RepeatMasker output.\

\ \

Display Conventions and Configuration

\ \

\ In pack or full mode, each interrupted repeat is displayed as boxes\ (fragments) joined by horizontal lines, labeled with the repeat name.\ If all fragments are on the same strand, arrows are added to the\ horizontal line to indicate the strand. In dense or squish mode, labels\ and arrows are omitted and in dense mode, all items are collapsed to\ fit on a single row.\

\ \

\ Items are shaded according to the average identity score of their\ fragments. Usually, the shade of an item is similar to the shades of\ its fragments unless some fragments are much more diverged than\ others. The score displayed above is the average identity score,\ clipped to a range of 50% - 100% and then mapped to the range\ 0 - 1000 for shading in the browser.\

\ \

Methods

\ \

\ UCSC has used the most current versions of the RepeatMasker software\ and repeat libraries available to generate these data. Note that these\ versions may be newer than those that are publicly available on the Internet.\

\ \

\ Data are generated using the RepeatMasker -s flag. Additional flags\ may be used for certain organisms. See the\ FAQ for more information.\

\ \

Credits

\ \

\ Thanks to Arian Smit, Robert Hubley and GIRI for providing the tools and\ repeat libraries used to generate this track.\

\ \

References

\ \

\ Smit AFA, Hubley R, Green P.\ RepeatMasker Open-3.0.\ \ http://www.repeatmasker.org. 1996-2010.\

\ \

\ Repbase Update is described in:\

\ \

\ Jurka J.\ \ Repbase Update: a database and an electronic journal of repetitive elements.\ Trends Genet. 2000 Sep;16(9):418-420.\ PMID: 10973072\

\ \

\ For a discussion of repeats in mammalian genomes, see:\

\ \

\ Smit AF.\ \ Interspersed repeats and other mementos of transposable elements in mammalian genomes.\ Curr Opin Genet Dev. 1999 Dec;9(6):657-63.\ PMID: 10607616\

\ \

\ Smit AF.\ \ The origin of interspersed repeats in the human genome.\ Curr Opin Genet Dev. 1996 Dec;6(6):743-8.\ PMID: 8994846\

\ rep 1 exonNumbers off\ group rep\ longLabel Fragments of Interrupted Repeats Joined by RepeatMasker ID\ shortLabel Interrupted Rpts\ track nestedRepeats\ type bed 12 +\ useScore 1\ visibility hide\ jaspar JASPAR Transcription Factors bigBed 6 . JASPAR Transcription Factor Binding Site Database 0 100 0 0 0 127 127 127 1 0 0 http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all

Description

\

\ This track represents genome-wide predicted binding sites for TF \ (transcription factor) binding profiles in the \ JASPAR \ CORE collection. This open-source database contains a curated, non-redundant \ set of binding profiles derived from published collections of experimentally \ defined transcription factor binding sites for eukaryotes.

\ \

Display Conventions and Configuration

\

\ Shaded boxes represent predicted binding sites for each of the TF profiles\ in the JASPAR CORE collection. The shading of the boxes indicates \ the p-value of the profile's match to that position (scaled between \ 0-1000 scores, where 0 corresponds to a p-value of 1 and 1000 to a \ p-value ≤ 10-10). Thus, the darker the shade, the \ lower (better) the p-value.

\ \

\ The default view shows only predicted binding sites with scores of 400 or greater but\ can be adjusted in the track settings. Multi-select filters allow viewing of\ particular transcription factors. At window sizes of greater than\ 10,000 base pairs, this track turns to density graph mode. \ Zoom to a smaller region and click into an item to see more detail.

\ \

\ From BED format documentation:\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
shade         
score in range≤ 166167-277278-388389-499500-611612-722723-833834-944≥ 945
\ \

Conversion table:

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Item score01001312003004005006007008009001000
p-value10.10.04910-210-310-410-510-610-710-810-9≤ 10-10
\ \

Methods

\

\ The JASPAR 2024 update expanded the JASPAR CORE collection by 20% (329 added and 72 upgraded\ profiles). The new profiles were introduced after manual curation, in which 26 629 TF binding\ motifs were curated and obtained as PFMs or discovered from ChIP-seq/-exo or DAP-seq data. 2500\ profiles from JASPAR 2022 were revised to either promote them to the CORE collection, update the\ associated metadata, or remove them because of validation inconsistencies or poor quality. The\ JASPAR database stores and focuses mostly on PFMs as the model of choice for TF-DNA interactions.\ More information on the methods can be found in the\ \ JASPAR 2024 publication or on the\ JASPAR website.

\ \

\ JASPAR 2022 contains updated transcription factor binding sites\ with additional transcription factor profiles. More information on the methods can be found in the\ \ JASPAR 2022 publication\ JASPAR 2022 publication or on the\ JASPAR website.

\ \

\ JASPAR 2020 scanned DNA sequences with JASPAR CORE TF-binding profiles \ for each taxa independently using PWMScan. TFBS predictions were selected with \ a PWM relative score ≥ 0.8 and a p-value < 0.05. P-values were scaled \ between 0 (corresponding to a p-value of 1) and 1000 (p-value ≤ 10-10) for \ coloring of the genome tracks and to allow for comparison of prediction \ confidence between different profiles.

\ \

\ JASPAR 2018 used the TFBS Perl module (Lenhard and Wasserman 2002) \ and FIMO (Grant, Bailey, and Noble 2011), as distributed within the MEME suite \ (version 4.11.2) (Bailey et al. 2009). For scanning genomes with the \ BioPerl TFBS module, profiles were converted to PWMs and matches were kept with a \ relative score ≥ 0.8. For the FIMO scan, profiles were reformatted to MEME motifs \ and matches with a p-value < 0.05 were kept. TFBS predictions that were not \ consistent between the two methods (TFBS Perl module and FIMO) were removed. The \ remaining TFBS predictions were colored according \ to their FIMO p-value to allow for comparison of prediction confidence between \ different profiles.

\ \

\ Please refer to the JASPAR 2024, 2022, 2020, and 2018 publications for more \ details (citation below).

\ \

Data Access

\

\ JASPAR Transcription Factor Binding data includes billions of items. Limited regions can \ be explored interactively with the \ Table Browser and cross-referenced with \ Data Integrator, although positional\ queries that are too big can lead to timing out. This results in a black page\ or truncated output. In this case, you may try reducing the chromosomal query to\ a smaller window.

\

\ For programmatic access, \ the track can be accessed using the Genome Browser's \ REST API. \ JASPAR annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\

\ The utilities for working with bigBed-formatted binary files can be downloaded\ here.\ Run a utility with no arguments to see a brief description of the utility and its options.\

    \
  • bigBedInfo provides summary statistics about a bigBed file including the number of\ items in the file. With the -as option, the output includes an\ autoSql\ definition of data columns, useful for interpreting the column values.
    • \
  • bigBedToBed converts the binary bigBed data to tab-separated text.\ Output can be restricted to a particular region by using the -chrom, -start\ and -end options.
    • \
\

\ \

Example: retrieve all JASPAR items in chr1:200001-200400

\ \ 
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/jaspar/JASPAR2024.bb -chrom=chr1 -start=200000 -end=200400 stdout
\ \

\ All data are freely available.\ Additional resources are available directly from the JASPAR group:

\ \ \

Other Genomes

\

The JASPAR group provides TFBS predictions for many additional species and \ genomes, accessible by connection to their \ \ Public Hub or by clicking the assembly links below:

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
SpeciesGenome assembly versions
Human - Homo sapienshg19, \ hg38
Mouse - Mus musculusmm10, \ mm39
Zebrafish - Danio reriodanRer11
Fruitfly - Drosophila melanogasterdm6
Nematode - Caenorhabditis elegansce10,\ ce11
Vase tunicate - Ciona intestinalisci3
Thale cress - Arabidopsis thalianaaraTha1
Yeast - Saccharomyces cerevisiaesacCer3
\ \

Credits

\

\ The JASPAR database is a joint effort between several labs \ (please see the latest JASPAR paper, below). \ Binding site predictions and UCSC tracks were computed by the Wasserman Lab. For \ enquiries about the data please contact Oriol Fornes \ (\ oriol@cmmt.\ ubc.ca\ ).

\ \
\

Wasserman Lab
\ Centre for Molecular Medicine and Therapeutics
\ BC Children's Hospital Research Institute
\ Department of Medical Genetics
\ University of British Columbia
\ Vancouver, Canada\

\
\ \

References

\

\ Castro-Mondragon JA, Riudavets-Puig R, Rauluseviciute I, Berhanu Lemma R, Turchi L, Blanc-Mathieu R,\ Lucas J, Boddie P, Khan A, Manosalva Pérez N et al.\ \ JASPAR 2022: the 9th release of the open-access database of transcription factor binding\ profiles.\ Nucleic Acids Res. 2021 Nov 30;.\ PMID: 34850907\

\ \

\ Fornes O, Castro-Mondragon JA, Khan A, van der Lee R, Zhang X, Richmond PA, \ Modi BP, Correard S, Gheorghe M, Baranašić D et al.\ \ JASPAR 2020: update of the open-access database of transcription factor \ binding profiles.\ Nucleic Acids Res. 2020 Jan 8;48(D1):D87-D92.\ PMID: 31701148; PMC: PMC7145627\

\ \

\ Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, \ Bessy A, Chèneby J, Kulkarni SR, Tan G et al.\ \ JASPAR 2018: update of the open-access database of transcription factor \ binding profiles and its web framework.\ Nucleic Acids Res. 2018 Jan 4;46(D1):D260-D266.\ PMID: 29140473; PMC: PMC5753243\

\ \

\ Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma\ RB, Lucas J, Chèneby J, Baranasic D et al.\ \ JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding\ profiles.\ Nucleic Acids Res. 2023 Nov 14;.\ PMID: 37962376\

\ regulation 1 compositeTrack on\ exonArrows on\ filter.score 400\ filterByRange.score 0:1000\ group regulation\ longLabel JASPAR Transcription Factor Binding Site Database\ maxWindowCoverage 15000\ noGenomeReason JASPAR files contain billions of items. The Table Browser allows regional queries for this track, but those may timeout if the regions are too big. See the Data Access section in the track description page for other ways to query this data, such as command-line tools and our API.\ noParentConfig on\ pennantIcon Updated red ../goldenPath/newsarch.html#030524 "Updated Mar. 5, 2024"\ shortLabel JASPAR Transcription Factors\ showCfg on\ spectrum on\ tableBrowser tbNoGenome\ track jaspar\ type bigBed 6 .\ url http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all\ urlLabel View on JASPAR:\ visibility hide\ wgEncodeCshlLongRnaSeqK562CellLongnonpolyaPlusRawSigRep2 K562 cel pA- + 2 bigWig 1.000000 1498507.000000 K562 whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 100 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel K562 cel pA- + 2\ subGroups view=PlusSignal cellType=t1K562 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562CellLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 1498507.000000\ wgEncodeBroadHistoneK562H2azStdSig K562 H2A.Z bigWig 0.040000 9285.080078 K562 H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 100 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H2azStdSig\ type bigWig 0.040000 9285.080078\ gnomADPextKidney_Cortex Kidney-Cortex bigWig 0 1 gnomAD pext Kidney-Cortex 0 100 34 255 221 144 255 238 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Kidney_Cortex.bw\ color 34,255,221\ longLabel gnomAD pext Kidney-Cortex\ parent gnomadPext off\ shortLabel Kidney-Cortex\ track gnomADPextKidney_Cortex\ visibility hide\ laminB1 LaminB1 (Tig3) wig -6.602 5.678 NKI LaminB1 DamID Map (log2-ratio scores, Tig3 cells) 0 100 0 0 127 127 127 191 0 0 0

Description

\ \

\ Please see the NKI Nuc Lamina "super-track" link above for description and methods.\

\ regulation 0 autoScale Off\ color 0,0,127\ group regulation\ longLabel NKI LaminB1 DamID Map (log2-ratio scores, Tig3 cells)\ maxHeightPixels 100:40:11\ shortLabel LaminB1 (Tig3)\ smoothingWindow 2\ spanList 60\ superTrack laminB1Super dense\ track laminB1\ type wig -6.602 5.678\ viewLimits -2:2\ visibility hide\ windowingFunction mean\ patSeq Lens Patents bigBed 12 + Lens PatSeq Patent Document Sequences 0 100 0 0 0 127 127 127 0 0 0 https://www.lens.org/lens/bio/patseqanalyzer#psa/homo_sapiens/latest/chromosome/$s/${-$}?appInClaims=1

Description

\

This track shows genome matches to biomedical sequences submitted with patent application\ documents to patent offices around the world. The sequences, their mappings, and selected\ patent information were graciously provided by PatSeq, a search tool part of The Lens,\ Cambia.

\ \

This track contains more data than the NCBI Genbank Division "Patents", as the\ sequences were extracted from patents directly.

\ \

Display Convention and Configuration

\ \

The data is split into two subtracks: one for sequences that are only part of patents that\ have submitted more than 100 sequences ("bulk patents")\ and a second track for all other sequences ("non-bulk patents").

\ \

A sequence can be\ part of many patent documents, with some being found in several thousand patents.\ This track shows only a single alignment for every sequence, colored based on\ its occurrence in the different patent documents and using a color schema similar to The Lens.\ \

\ Based on the first sequence match, the four different item colors follow this priority ranking in\ descending order:
\ \ \ \ \ \
the sequence is referenced in the claims of a granted patent
the sequence is disclosed in a granted patent
the sequence is referenced in the claims of a patent application
the sequence is disclosed in a patent application

\

\ \

Sequences referenced in the claims section of a\ patent document define the scope of the invention and are important during\ litigation. Therefore, they are given priority in the color scheme. Patent\ grant documents form the basis of patent protection and are prioritized over\ applications.

\ \

Hover over a feature with the mouse to see\ the total number of documents where the sequence has been referenced, how many\ of these documents are granted patents and how often the sequence has been\ referenced in the claims. A randomly selected document title is also shown in\ the mouseover.

\ \

Clicking on a feature will bring up the details page, which contains information about\ the sequence and alignment of that feature.\ The link at the top of the page opens the PatSeq Analyzer with\ the chromosomal region covered by the feature that was clicked. The PatSeq Analyzer\ is a specialized genome browser that allows for the viewing and filtering of patent\ sequence matches in detail.\

\ \

The next section of the details page is a list of up to ten patent documents that include this\ sequence, with the number of occurrences within each document in parentheses.\ This is followed by up to thirty links to patent documents. The patent documents listed in these\ sections are displayed in order of the number of sequence occurrences in the document. Shown below\ these are the links to the sequence in The Lens, in the format\ "patentDocumentIdentifier-SEQIDNO (docSequenceCount)". The "SEQ ID NO"\ is an integer number, the unique identifier of a patent sequence in a patent\ document. When a protein sequence has been annotated on a nucleotide sequence,\ the "SEQ ID NO" contains the reading frame separated by a ".", e.g.\ "1.1" would indicate the first frame of SEQIDNO 1.\ The total number of sequences submitted with the patent document ("docSequenceCount") is\ shown in parentheses after the SEQIDNO. The links to the sequence are separated into the\ categories "granted and in claims", "granted", "in claims"\ and "applications" (=all others). Sequence identifiers link to the respective pages on PatSeq. A maximum of thirty documents\ are linked from this page per category listed in order of the number of sequence occurrences;\ please use PatSeq Analyzer to view all matching documents.\

\ \

The score of the features in this track is the number of documents where the\ sequence appears in the claims. For example, by setting the score filter to 1, only\ sequences are shown that have been referenced at least once in the claims.\

\ \

Methods

\

\ More than 96 million patent document files were collected by The Lens. The\ ST.25-formatted\ sequences were extracted and mapped to genomes with the aligners BLAT and BWA. The minimal\ identity of the query over the alignment is 95%. Note that for hg19, no patents are shown\ on chrM, as the mitochondrial chromosome used for the mapping was the one from\ the Ensembl genome FASTA files. \

\ \

Credits

\

\ Thanks to the team behind The Lens,\ in particular,\ Osmat Jefferson\ and Deniz Koellhofer, for making these data available.\

\ \

Feedback

\

\ Send suggestions on the way data in this track is visualized to our support\ address\ \ genome@soe.ucsc.edu.\ \ Questions on the data itself are best directed to \ support@cambia.org.\ \

\ \

Data access

\

\ The raw data can be explored interactively with the Table Browser.\ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ The files for this track are called patNonBulk.bb and patBulk.bb. Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\

\ \

\ The command to obtain the data as a tab-separated table looks like this:
\ 

bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi/patNonBulk.bb -chrom=chr5 -start=1000000 -end=2000000 output.tsv
\ A full log of the commands that were used to build this annotation is available\ from our database\ build description. In this text file, search for "patNonBulk" to find the right section.

\ \

References

\

\ \ Editorial: The patent bargain\ Nature. 2013 Dec 12;504(7479):187-188.\

\ \

\ \ Patently transparent.\ Nat Biotechnol. 2006 May;24(5):474.\ PMID: 16680110\

\ \

\ Jefferson OA, Köllhofer D, Ehrich TH, Jefferson RA.\ \ Transparency tools in gene patenting for informing policy and practice.\ Nat Biotechnol. 2013 Dec;31(12):1086-93.\ PMID: 24316644\

\ phenDis 1 compositeTrack on\ exonNumbers off\ group phenDis\ itemRgb on\ linkIdInName on\ longLabel Lens PatSeq Patent Document Sequences\ mouseOverField mouseOver\ sepFields claimGrantSeqIds\ shortLabel Lens Patents\ skipFields mouseOver,fprint\ track patSeq\ type bigBed 12 +\ url https://www.lens.org/lens/bio/patseqanalyzer#psa/homo_sapiens/latest/chromosome/$s/${-$}?appInClaims=1\ urlLabel Open Lens PatSeq Analyzer with this chromosomal range\ urls intDocIds="http://www.lens.org/lens/patent/$$" claimGrantSeqIds="http://www.lens.org/lens/patent/$$" claimSeqIds="http://www.lens.org/lens/patent/$$" grantSeqIds="http://www.lens.org/lens/patent/$$" appSeqIds="http://www.lens.org/lens/patent/$$"\ visibility hide\ wgEncodeCaltechRnaSeqLhcnm2R2x75Il200Myc7dAlignsRep1 LHCND 2x75 A 1 bam LHCN-M2 Myocyte 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 100 0 0 0 127 127 127 0 0 0 expression 1 longLabel LHCN-M2 Myocyte 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel LHCND 2x75 A 1\ subGroups view=Aligns cellType=t2LHCNM2D insertLength=il200 readType=a1R2x75 rep=rep1 treatment=bDIFF7D\ track wgEncodeCaltechRnaSeqLhcnm2R2x75Il200Myc7dAlignsRep1\ type bam\ liftHg38 liftOver & ReMap chain UCSC LiftOver and NCBI ReMap: Genome alignments to convert annotations to hg38 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ This track shows alignments from the hg19 to the hg38 genome assembly, used by the UCSC\ liftOver tool and \ NCBI's ReMap\ service, respectively.\ \

Display Conventions and Configuration

\ \

The track has three subtracks, one for UCSC and two for NCBI alignments.

\

\ The alignments are shown as "chains" of alignable regions. The display is similar to\ the other chain tracks, see our \ \ chain display documentation for more information.\

\ \ \

Data access

\

\ UCSC liftOver chain files for hg19 to hg38 can be obtained from a dedicated directory on our\ \ Download server. The NCBI chain file can be obtained from the \ \ MySQL tables directory on our download server, the filename is 'chainHg38ReMap.txt.gz'.\

\ \

\ Both tables can also be explored interactively with the\ Table Browser or the\ Data Integrator.\

\ \

Methods

\

\ ReMap 2.2 alignments were downloaded from the \ \ NCBI FTP site and converted with the UCSC kent command line tools. Like all data processing for\ the genome browser, the procedure is documented in our\ \ hg19 makeDoc file.\

\ \

Credits

\

\ Thanks to NCBI for making the ReMap data available and to Angie Hinrichs for the file conversion.\

\ map 1 compositeTrack on\ group map\ longLabel UCSC LiftOver and NCBI ReMap: Genome alignments to convert annotations to hg38\ shortLabel liftOver & ReMap\ track liftHg38\ type chain\ visibility hide\ lincRNAsTranscripts lincRNA Transcripts genePred lincRNA and TUCP transcripts 3 100 100 50 0 175 150 128 0 0 0

Description

\ \

This track displays the Human Body Map lincRNAs (large intergenic non\ coding RNAs) and TUCPs (transcripts of uncertain coding potential), as well as their\ expression levels across 22 human tissues and cell lines. The Human Body Map catalog was generated\ by integrating previously existing annotation sources with transcripts that were de-novo assembled\ from RNA-Seq data. These transcripts were collected from ~4 billion RNA-Seq reads across 24 tissues \ and cell types.

\ \

Expression abundance was estimated by Cufflinks (Trapnell et al., 2010) based on RNA-Seq. \ Expression abundances were estimated on the gene locus level, rather than for each transcript \ separately and are given as raw FPKM. The prefixes tcons_ and tcons_l2_ are used to describe \ lincRNAs and TUCP transcripts, respectively. Specific details about the catalog generation and data \ sets used for this study can be found in Cabili et al (2011). Extended \ characterization of each transcript in the human body map catalog can be found at the Human lincRNA\ Catalog website.

\ \

Expression abundance scores range from 0 to 1000, and are displayed from light blue to dark blue\ respectively:

\ \ \

01000

\ \

Credits

\ \

The body map RNA-Seq data was kindly provided by the Gene Expression\ Applications research group at Illumina.

\ \

References

\ \

\ Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL.\ \ Integrative annotation of human large intergenic noncoding RNAs reveals global properties and\ specific subclasses.\ Genes Dev. 2011 Sep 15;25(18):1915-27.\ PMID: 21890647; PMC: PMC3185964\

\ \

\ Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter\ L.\ \ Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform\ switching during cell differentiation.\ Nat Biotechnol. 2010 May;28(5):511-5.\ PMID: 20436464; PMC: PMC3146043\

\ genes 1 altColor 175,150,128\ color 100,50,0\ html lincRNAs\ longLabel lincRNA and TUCP transcripts\ noInherit on\ shortLabel lincRNA Transcripts\ superTrack lincRNAs pack\ track lincRNAsTranscripts\ type genePred\ lincRNAs lincRNAs Human Body Map lincRNAs and TUCP Transcripts 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

This track displays the Human Body Map lincRNAs (large intergenic non\ coding RNAs) and TUCPs (transcripts of uncertain coding potential), as well as their\ expression levels across 22 human tissues and cell lines. The Human Body Map catalog was generated\ by integrating previously existing annotation sources with transcripts that were de-novo assembled\ from RNA-Seq data. These transcripts were collected from ~4 billion RNA-Seq reads across 24 tissues \ and cell types.

\ \

Expression abundance was estimated by Cufflinks (Trapnell et al., 2010) based on RNA-Seq. \ Expression abundances were estimated on the gene locus level, rather than for each transcript \ separately and are given as raw FPKM. The prefixes tcons_ and tcons_l2_ are used to describe \ lincRNAs and TUCP transcripts, respectively. Specific details about the catalog generation and data \ sets used for this study can be found in Cabili et al (2011). Extended \ characterization of each transcript in the human body map catalog can be found at the Human lincRNA\ Catalog website.

\ \

Expression abundance scores range from 0 to 1000, and are displayed from light blue to dark blue\ respectively:

\ \ \

01000

\ \

Credits

\ \

The body map RNA-Seq data was kindly provided by the Gene Expression\ Applications research group at Illumina.

\ \

References

\ \

\ Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL.\ \ Integrative annotation of human large intergenic noncoding RNAs reveals global properties and\ specific subclasses.\ Genes Dev. 2011 Sep 15;25(18):1915-27.\ PMID: 21890647; PMC: PMC3185964\

\ \

\ Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter\ L.\ \ Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform\ switching during cell differentiation.\ Nat Biotechnol. 2010 May;28(5):511-5.\ PMID: 20436464; PMC: PMC3146043\

\ genes 0 group genes\ html lincRNAs\ longLabel Human Body Map lincRNAs and TUCP Transcripts\ shortLabel lincRNAs\ superTrack on\ track lincRNAs\ gnomADPextLiver Liver bigWig 0 1 gnomAD pext Liver 0 100 170 187 102 212 221 178 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Liver.bw\ color 170,187,102\ longLabel gnomAD pext Liver\ parent gnomadPext off\ shortLabel Liver\ track gnomADPextLiver\ visibility hide\ lovdComp LOVD Variants bigBed 4 + LOVD: Leiden Open Variation Database Public Variants 0 100 0 0 0 127 127 127 0 0 0

Description

\ \
\

NOTE:
\ LOVD is intended for use primarily by physicians and other\ professionals concerned with genetic disorders, by genetics researchers, and\ by advanced students in science and medicine. While the LOVD database is\ open to the public, users seeking information about a personal medical or\ genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal questions. Further, please be\ sure to visit the LOVD web site for the very latest, as they are continually \ updating data.

\ \

DOWNLOADS:
\ LOVD databases are owned by their respective curators\ and are not available for download or mirroring \ by any third party without their permission. Batch queries on this track are only available via the\ UCSC Beacon API (see below). See also the\ LOVD web site\ for a list of database installations and the respective curators.

\ \

\ This track shows the genomic positions of all public entries in public\ installations of the Leiden Open Variation Database system (LOVD) and the effect of the \ variant, if annotated. \ Due to the copyright restrictions of the LOVD databases, UCSC is not allowed to\ host any further information. To get details on a variant (bibliographic\ reference, phenotype, disease, patient, etc.), follow the\ "Link to LOVD" to the central server at Leiden, which will then redirect you\ to the details page on the particular LOVD server reporting this variant.\

\ \

\ Since Apr 2020, similar to the ClinVar track, the data is split into two subtracks, for variants\ with a length of < 50 bp and >= 50 bp, respectively.\

\ \

\ LOVD is a flexible, freely-available tool for gene-centered collection and\ display of DNA variations. It is not a database itself, but rather a platform\ where curators store and analyze data. While the LOVD team and the biggest LOVD\ sites are run at the Leiden University Medical Center, LOVD installations and their\ curators are spread over the whole world. Most LOVD databases report at least \ some of their content back to Leiden to allow global cross-database search, which\ is, among others, exported to this UCSC Genome Browser track every month.\

\

\ A few LOVD databases are entirely missing from this track. Reasons include configuration issues and\ intentionally blocked data search. During the last check in November 2019, the following databases\ did not export any variants:\

\ \ Curators who want to share data in their database so it is present in this track can find more\ details in the LOVD FAQ.

\ \ \

Batch queries

\

The LOVD data is not available for download or for batch queries in the Table Browser. \ However, it is available for programmatic access via the Global\ Alliance Beacon API, a web service that accepts queries in the form\ (genome, chromosome, position, allele) and returns "true" or "false" depending\ on whether there is information about this allele in the database. For more details see our \ Beacon Server.

\ \

\ To find all LOVD databases that contain variants of a given gene, you can get a list of databases by\ constructing a url in the format geneSymbol.lovd.nl, for example,\ tp53.lovd.nl. You can\ then use the LOVD API to retrieve more detailed information from a particular database. See the\ LOVD FAQ.

\ \

Display Conventions and Configuration

\ \

\ Genomic locations of LOVD variation entries are labeled with the gene symbol\ and the description of the mutation according to Human Gene Variation Society\ standards. For instance, the label AGRN:c.172G>A means that the cDNA of AGRN is\ mutated from G to A at position 172.\

\ \

\ Since October 2017, the functional effect for variants is shown on the details page, if annotated.\ The possible values are:\

    \
  • notClassified
    • \
  • functionAffected
    • \
  • notThisDisease
    • \
  • notAnyDisease
    • \
  • functionProbablyAffected
    • \
  • functionProbablyNotAffected
    • \
  • functionNotAffected
    • \
  • unknown
    • \
\ LOVD does not use the term "pathogenic", please see the HGVS Terminology page for\ more details.

\ \

\ All other information is shown on the respective LOVD variation page, accessible via the\ "Link to LOVD" above.\

\ \

Methods

\ \

\ The mappings displayed in this track were provided by LOVD.\

\ \

Credits

\ \

\ Thanks to the LOVD team, Ivo Fokkema, Peter Taschner, Johan den Dunnen, and all LOVD curators who\ gave permission to show their data.

\ \

References

\ \

\ Fokkema IF, Taschner PE, Schaafsma GC, Celli J, Laros JF, den Dunnen JT.\ \ LOVD v.2.0: the next generation in gene variant databases.\ Hum Mutat. 2011 May;32(5):557-63.\ PMID: 21520333\

\ phenDis 1 compositeTrack on\ group phenDis\ html lovdComp\ longLabel LOVD: Leiden Open Variation Database Public Variants\ shortLabel LOVD Variants\ tableBrowser off lovdComp\ track lovdComp\ type bigBed 4 +\ visibility hide\ lrg LRG Regions bigBed 12 + Locus Reference Genomic (LRG) / RefSeqGene Sequences Mapped to Feb. 2009 (GRCh37/hg19) Assembly 0 100 72 167 38 163 211 146 0 0 0 http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml

Description

\

\ Locus Reference Genomic (LRG)\ sequences are manually curated, stable DNA sequences that surround a\ locus (typically a gene) and provide an unchanging coordinate system\ for reporting sequence variants. They are not necessarily identical\ to the corresponding sequence in a particular reference genome\ assembly (such as Feb. 2009 (GRCh37/hg19)), but can be mapped to each version of a\ reference genome assembly in order to convert between the stable LRG\ variant coordinates and the various assembly coordinates.\

\ \

\ We import the data from the LRG database at the EBI. \ The NCBI RefSeqGene database is almost identical to LRG, \ but it may contain a few more sequences. See the NCBI documentation.\

\ \

\ Each LRG record also includes at least one stable transcript\ on which variants may be reported. These transcripts\ appear in the LRG Transcripts track in the Gene and Gene Predictions\ track section.

\ \

Methods

\

\ LRG sequences are suggested by the community studying a locus (for example,\ Locus-Specific Database curators, research laboratories, mutation consortia).\ LRG curators then examine the submitted transcript as well as other known\ transcripts at the locus, in the context of alignment and public expression\ data.\ For more information on the selection and annotation process, see the \ LRG FAQ,\ (Dalgleish, et al.) and (MacArthur, et al.).\

\ \

Credits

\

\ This track was produced at UCSC using\ LRG XML files.\ Thanks to\ LRG collaborators\ for making these data available.\

\ \

References

\

\ Dalgleish R, Flicek P, Cunningham F, Astashyn A, Tully RE, Proctor G, Chen Y, McLaren WM, Larsson P,\ Vaughan BW et al.\ \ Locus Reference Genomic sequences: an improved basis for describing human DNA variants.\ Genome Med. 2010 Apr 15;2(4):24.\ PMID: 20398331; PMC: PMC2873802 \

\ \

\ MacArthur JA, Morales J, Tully RE, Astashyn A, Gil L, Bruford EA, Larsson P, Flicek P, Dalgleish R,\ Maglott DR et al.\ \ Locus Reference Genomic: reference sequences for the reporting of clinically relevant sequence\ variants.\ Nucleic Acids Res. 2014 Jan;42(Database issue):D873-8.\ PMID: 24285302; PMC: PMC3965024\

\ map 1 baseColorDefault diffBases\ baseColorUseSequence lrg\ color 72,167,38\ group map\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Locus Reference Genomic (LRG) / RefSeqGene Sequences Mapped to Feb. 2009 (GRCh37/hg19) Assembly\ noScoreFilter .\ searchIndex name,ncbiAcc\ shortLabel LRG Regions\ showDiffBasesAllScales .\ track lrg\ type bigBed 12 +\ url http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml\ urlLabel Link to LRG report:\ urls hgncId="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" ncbiAcc="https://www.ncbi.nlm.nih.gov/nuccore/$$"\ visibility hide\ lrgTranscriptAli LRG Transcripts bigPsl Locus Reference Genomic (LRG) / RefSeqGene Fixed Transcript Annotations 0 100 54 125 29 127 127 127 0 0 0 http://ftp.ebi.ac.uk/pub/databases/lrgex/$<_lrgParent>.xml#transcripts_anchor

Description

\

\ This track shows the fixed (unchanging) transcript(s) associated with\ each \ Locus Reference Genomic (LRG) sequence.\ LRG\ sequences are manually curated, stable DNA sequences that surround a\ locus (typically a gene) and provide an unchanging coordinate system\ for reporting sequence variants. They are not necessarily identical\ to the corresponding sequence in a particular reference genome\ assembly (such as Feb. 2009 (GRCh37/hg19)), but can be mapped to each version of a\ reference genome assembly in order to convert between the stable LRG\ variant coordinates and the various assembly coordinates.\

\

\ We import the data from the LRG database at the EBI. \ The NCBI RefSeqGene database is almost identical to LRG, \ but it may contain a few more sequences. See the NCBI documentation.\

\ \

\ The LRG Regions track, in the Mapping and Sequencing Tracks section,\ includes more information about the LRG including the HGNC gene symbol\ for the gene at that locus, source of the LRG sequence, and summary of\ differences between LRG sequence and the genome assembly.\

\ \

Methods

\

\ LRG sequences are suggested by the community studying a locus (for example,\ Locus-Specific Database curators, research laboratories, mutation consortia).\ LRG curators then examine the submitted transcript as well as other known\ transcripts at the locus, in the context of alignment and public expression\ data.\ For more information on the selection and annotation process, see the \ LRG FAQ,\ (Dalgleish, et al.) and (MacArthur, et al.).\

\ \

Credits

\

\ This track was produced at UCSC using\ LRG XML files.\ Thanks to\ LRG\ collaborators for making these data available.\

\ \

References

\

\ Dalgleish R, Flicek P, Cunningham F, Astashyn A, Tully RE, Proctor G, Chen Y, McLaren WM, Larsson P,\ Vaughan BW et al.\ \ Locus Reference Genomic sequences: an improved basis for describing human DNA variants.\ Genome Med. 2010 Apr 15;2(4):24.\ PMID: 20398331; PMC: PMC2873802\

\ \

\ MacArthur JA, Morales J, Tully RE, Astashyn A, Gil L, Bruford EA, Larsson P, Flicek P, Dalgleish R,\ Maglott DR et al.\ \ Locus Reference Genomic: reference sequences for the reporting of clinically relevant sequence\ variants.\ Nucleic Acids Res. 2014 Jan;42(Database issue):D873-8.\ PMID: 24285302; PMC: PMC3965024\

\ genes 1 altColor 127,127,127\ baseColorDefault genomicCodons\ baseColorUseSequence lfExtra\ bigDataUrl /gbdb/hg19/bbi/lrgBigPsl.bb\ color 54,125,29\ group genes\ html lrgTranscriptAli\ indelDoubleInsert on\ indelPolyA on\ indelQueryInsert on\ longLabel Locus Reference Genomic (LRG) / RefSeqGene Fixed Transcript Annotations\ mouseOver ${name}: ${ncbiTranscript} ${ensemblTranscript} ${ncbiProtein} ${ensemblProtein} ${geneName}\ searchIndex name\ shortLabel LRG Transcripts\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ skipEmptyFields on\ skipFields mouseOver\ track lrgTranscriptAli\ type bigPsl\ url http://ftp.ebi.ac.uk/pub/databases/lrgex/$<_lrgParent>.xml#transcripts_anchor\ urlLabel Link to LRG transcript\ urls ncbiTranscript=https://www.ncbi.nlm.nih.gov/nuccore/$$ ensemblTranscript=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$ ncbiProtein=https://www.ncbi.nlm.nih.gov/protein/$$ ensemblProtein=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$\ visibility hide\ gnomADPextLung Lung bigWig 0 1 gnomAD pext Lung 0 100 153 255 0 204 255 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Lung.bw\ color 153,255,0\ longLabel gnomAD pext Lung\ parent gnomadPext off\ shortLabel Lung\ track gnomADPextLung\ visibility hide\ maleView Male bed 3 deCODE Recombination maps, 10Kb bin size, October 2010 0 100 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 1 longLabel deCODE Recombination maps, 10Kb bin size, October 2010\ parent decodeRmap\ shortLabel Male\ track maleView\ view male\ visibility hide\ diffView Male-Female bed 3 deCODE Recombination maps, 10Kb bin size, October 2010 2 100 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 1 longLabel deCODE Recombination maps, 10Kb bin size, October 2010\ parent decodeRmap\ shortLabel Male-Female\ track diffView\ view diff\ visibility full\ ctgPos Map Contigs ctgPos Physical Map Contigs 0 100 150 0 0 202 127 127 0 0 0

Description

\

\ This track shows the locations of human contigs on the physical map. \ The underlying data is derived from the GRCh37 AGP file \ that accompanies this assembly. \ The contigs in this track are identical to those in the\ \ GRC Map Contigs track, \ the difference being the the contigs in the GRC Map Contigs \ track are named according to GRC.\ All contigs in this track are oriented to the \ "+" strand.\

\ \

Methods

\

\ For human genome reference sequences dated April 2003 and later,\ the individual chromosome sequencing centers are responsible\ for preparing the assembly of their chromosomes in \ AGP format\ (see also: AGP File Specification).\ The files provided by these centers are checked and validated at NCBI, and\ form the basis for the AGP file that defines the physical \ map contigs.

\

\ For more information on the human genome assembly process, see \ \ NCBI Assembly Primer.

\ map 0 color 150,0,0\ group map\ longLabel Physical Map Contigs\ shortLabel Map Contigs\ track ctgPos\ type ctgPos\ visibility hide\ wgEncodeMapability Mappability bed 3 Mappability or Uniqueness of Reference Genome from ENCODE 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ These tracks display the level of sequence uniqueness of the reference GRCh37/hg19\ genome assembly. They were generated using different window sizes, and high signal\ will be found in areas where the sequence is unique.\ \

Display Conventions and Configuration

\

This track is a multi-view composite track that contains multiple data types\ separated as separate (views). For each view, there are\ multiple subtracks representing different sequence lengths or methods of preparation.\ Instructions for configuring multi-view tracks are\ here.\ Mappability tracks consist of the following views:\

\
Alignability
\
These tracks provide a measure of how often the sequence found at the particular\ location will align within the whole genome. Unlike measures of uniqueness, alignability\ will tolerate up to 2 mismatches. These tracks are in the form of signals ranging from\ 0 to 1 and have several configuration options.
\

\
Uniqueness
\
These tracks are a direct measure of sequence uniqueness throughout the reference\ genome. These tracks are in the form of signals ranging from 0 to 1 and have several\ configuration options.
\

\

Blacklisted Regions
\
Both tracks of blacklisted regions attempt to identify regions of the reference\ genome which are troublesome for high throughput sequencing aligners. Troubled\ regions may be due to repetitive elements or other anomalies. Each track contains a\ set of regions of varying length with no special configuration options.
\

\ \

Methods

\

Alignability

\ The CRG Alignability tracks display how uniquely k-mer sequences align\ to a region of the genome. To generate the data, the GEM-mappability\ program has\ been employed. The method is equivalent to mapping sliding windows of k-mers\ (where k has been set to 36, 40, 50, 75 or 100 nts to produce these tracks)\ back to the genome using the GEM mapper aligner (up to 2 mismatches were\ allowed in this case). For each window, a mappability score was computed\ (S = 1/(number of matches found in the genome): S=1 means one match in the\ genome, S=0.5 is two matches in the genome, and so on). The\ CRG Alignability tracks were\ generated independently of the ENCODE project, in the framework of the GEM\ (GEnome Multitool) project.\ \

Uniqueness

\ The Duke Uniqueness tracks display how unique each sequence is on the\ positive strand starting at a particular base and of a particular length.\ Thus, the 20 bp track reflects the uniqueness of all 20 base sequences with\ the score being assigned to the first base of the sequence. Scores are \ normalized to between 0 and 1, with 1 representing a completely unique sequence \ and 0 representing a sequence that occurs more than 4 times in the genome\ (excluding chrN_random and alternative haplotypes). A score of 0.5\ indicates the sequence occurs exactly twice, likewise 0.33 for three times\ and 0.25 for four times. The Duke Uniqueness tracks were generated\ for the ENCODE project as tools in the development of the\ Open Chromatin:\ DNaseI HS,\ FAIRE,\ TFBS and\ Synthesis tracks.\ \

Blacklisted Regions

\ The DAC Blacklisted Regions aim to identify a comprehensive set of\ regions in the human genome that have anomalous, unstructured, high\ signal/read counts in next gen sequencing experiments independent of\ cell line and type of experiment. There were 80 open chromatin tracks\ (DNase and FAIRE datasets) and 20 ChIP-seq input/control tracks spanning\ ~60 human tissue types/cell lines in total used to identify these regions\ with signal artifacts. These regions tend to have a very high ratio of\ multi-mapping to unique mapping reads and high variance in mappability.\ Some of these regions overlap pathological repeat elements such as satellite,\ centromeric and telomeric repeats. However, simple mappability based filters\ do not account for most of these regions. Hence, it is recommended to use this\ blacklist alongside mappability filters. The\ DAC Blacklisted Regions track was generated for the ENCODE project.\ \ \

\ The Duke Excluded Regions track displays genomic regions for\ which mapped sequence tags were filtered out before signal generation\ and peak calling for\ Open Chromatin:\ DNaseI HS and\ FAIRE tracks.\ This track contains problematic regions for short sequence tag signal\ detection (such as satellites and rRNA genes). The\ Duke Excluded Regions track was generated for the ENCODE project.\

\ \

Release Notes

\

\ This is Release 3 (October 2011) of this track, which now includes the DAC\ Blacklisted regions, Duke Uniqueness and Duke Excluded regions.\ \

Credits

\

\ The CRG Alignability track was created by Thomas Derrien and Paolo\ Ribeca\ \ in Roderic Guigo's lab at the Centre for Genomic\ Regulation (CRG), Barcelona, Spain. Thomas Derrien was supported by funds from NHGRI\ for the ENCODE project, while Paolo Ribeca was funded by a Consolider grant\ CDS2007-00050 from the Spanish Ministerio de Educación y Ciencia.\

\ \

\ The Duke Uniqueness and Duke Excluded Regions tracks were created\ by\ Terry Furey\ \ and Debbie Winter at Duke Univerisity's\ Institute for Genome Sciences & Policy (IGSP);\ and Stefan Graf at the\ University of Cambridge, Department of Oncology and CR-UK Cambridge Research Institute (CRI).\ We thank NHGRI for ENCODE funding support.\

\ \

\ The DAC Blacklisted Regions were created by\ Anshul Kundaje\ at Stanford University in the labs of\ Batzoglou and\ Sidow\ and in cooperation with\ Ewan Birney\ at the\ European Bioinformatics Insitute (EBI).\ We thank NHGRI for ENCODE funding support. (Contact:\ Anshul Kundaje).\

\ \

References

\

\ Derrien T, Estelle J, Marco Sola S, Knowles DG, Raineri E, Guigo R, Ribeca P.\ Fast computation and applications of genome mappability.\ PLoS One. 2012;7(1):e30377.

\ \

Data Release Policy

\

Data users may freely use all data in this track. ENCODE labs that\ contributed annotations have exempted the data displayed here from the\ ENCODE data release policy restrictions.\ map 1 allButtonPair on\ compositeTrack on\ dragAndDrop subTracks\ fileSortOrder grant=PI lab=Lab view=View size=Window_size dccAccession=UCSC_Accession fileSize=Size fileType=File_Type\ group map\ longLabel Mappability or Uniqueness of Reference Genome from ENCODE\ noInherit on\ priority 0\ shortLabel Mappability\ sortOrder view=+ lab=+ win=+\ subGroup1 view Mappability ALN=Broad_Alignability CRGMAP=Alignability DUNIQ=Uniqueness RUNIQ=Rosetta_Uniqueness UUNIQ=UMass_Uniqueness XR=Blacklisted\ subGroup2 win Window_Size w015=15bp w020=20bp w024=24bp w035=35bp w036=36bp w040=40bp w050=50bp w075=75bp w100=100bp zNA=Varied\ subGroup3 lab Lab DAC=DAC DUKE=Duke CRG=CRG-Guigo\ track wgEncodeMapability\ type bed 3\ visibility hide\ mastermind Mastermind Variants bigBed 9 + Genomenon Mastermind Variants extracted from full text publications 1 100 0 0 0 127 127 127 0 0 0

Description

\

\ This track shows most variants found in the full text of scientific publications gathered by\ Genomenon Mastermind. Mastermind\ uses a software that searches for disease-gene-variant associations in the \ scientific literature. The genome browser track shows only if a\ variant has been indexed by the search engine.\

\ \

\ To get details on a variant (bibliographic references, disease, etc)\ click it and follow the "Protein change and link to details" at the top\ of the details page. Mouse over an item to show the gene and amino acid change and the \ scores MMCNT1, MMCNT2 and MMCNT3, explained below.\

\ \

\ Genomenon Mastermind Genomic Search Engine is a commercial database of variants\ likely to be mentioned in full text scientific articles. A limited number of\ queries per week is free for healthcare professionals and researchers, if they register on the\ signup\ page page. Advanced features require a license for the\ Mastermind Professional Edition, \ which contains the same content but allows more comprehensive searches.\

\ \

Display Conventions and Configuration

\ \

\ Genomic locations of variants are labeled with the nucleotide change.\ Hover over the features to see the gene, the amino acid change and the scores MMCNT1, MMCNT2 and \ MMCNT3, described below. All other information is shown on the respective Mastermind variant detail\ page, accessible via the "Protein change and link to details" at the top of the details page. The\ features are colored based on their evidence:\

\ \

As suggested by Genomenom, we added a filter on all variants, so the data are not exactly identical \ to their website. We skip \ variants with more than one nucleotide and a MMCNT of 0 and where the variant is not an indel. \ This means that for longer variants, only variants are shown that are explicitly\ mentioned in the papers. This makes the data more specific.\

\ \

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
ColorLevel of support
High: at least one paper mentions this exact cDNA change
Medium: at least two papers mention a variant that leads to the same amino acid change
Low: only a single paper mentions a variant that leads to the same amino acid change
\

\ \

\ The three numbers that are shown on the mouse-over and the details page have the following meaning (MM=Mastermind):\

    \
  • MMCNT1: cDNA-level exact matches. This is the number of articles that mention the variant at the nucleotide level in either the title/abstract or the full-text.\
  • MMCNT2: cDNA-level possible matches. This is the number of articles with nucleotide-level matches (from 1) plus articles with protein-level matches in which the publication did not specify the cDNA-level change, meaning they could be referring to this nucleotide-level variant but there is insufficient data in these articles to determine conclusively.\
  • MMCNT3: This is the number of articles citing any variant resulting in the same biological effect as this variant. This includes the articles from MMCNT1 and MMCNT2 plus articles with alternative cDNA-level variants that result in the same protein effect.\
\ On the track settings page one can filter on these scores under the display mode section by entering\ a minimum number of articles for each kind of evidence.\ \

\ \

Data access

\

\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator. The data can be accessed from scripts through our \ API, the track name is "mastermind".\ \

\ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ The file for this track is called mastermind.bb. Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool\ can also be used to obtain only features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi/mastermind.bb -chrom=chr21 -start=0 -end=100000000 stdout

\

\ \

\ Previous versions of this track can be found on our archive download server.\

\ \

Methods

\ \

The Mastermind Cited Variants file was downloaded,\ converted to BED format with scripts that are available in our \ Git\ repository and converted to a bigBed file with the UCSC genome browser tool\ bedToBigBed.

\ \

This track is automatically updated two weeks after every Mastermind CVR release, which happens every three months.

\ \ \

Credits

\ \

\ Thanks to Mark Kiel, Steve Schwartz and Clayton Wheeler from Genomenon for making these data available.\

\ \

References

\

\ Chunn LM, Nefcy DC, Scouten RW, Tarpey RP, Chauhan G, Lim MS, Elenitoba-Johnson KSJ, Schwartz SA,\ Kiel MJ.\ \ Mastermind: A Comprehensive Genomic Association Search Engine for Empirical Evidence Curation and\ Genetic Variant Interpretation.\ Front Genet. 2020 Nov 13;11:577152. doi:\ 10.3389/fgene.2020.577152.\ PMID: 33281875; PMC: PMC7691534\

\ phenDis 1 bigDataUrl /gbdb/hg19/bbi/mastermind.bb\ dataVersion /gbdb/$D/bbi/mastermindRelease.txt\ exonNumbers off\ filter.mmcnt1 0\ filter.mmcnt2 0\ filter.mmcnt3 0\ itemRgb on\ longLabel Genomenon Mastermind Variants extracted from full text publications\ maxItems 1000000\ maxWindowCoverage 40000\ mouseOverField _mouseOver\ noScoreFilter on\ parent varsInPubs pack\ shortLabel Mastermind Variants\ track mastermind\ type bigBed 9 +\ urls url=$$\ visibility dense\ wgEncodeOpenChromChipMcf7Pol2SerumstimPkRep1 MCF-7 Pol2 stm Pk narrowPeak MCF-7 serum stim Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 100 0 0 0 127 127 127 1 0 0 regulation 1 longLabel MCF-7 serum stim Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel MCF-7 Pol2 stm Pk\ subGroups view=Peaks factor=POL2 cellType=t2MCF7 treatment=SERUMSTIM\ track wgEncodeOpenChromChipMcf7Pol2SerumstimPkRep1\ type narrowPeak\ gnomadExomesMeanCoverage Mean Coverage bigWig 0 100 gnomAD Mean Exome Sample Coverage 2 100 255 0 0 255 127 127 0 0 24 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.exomes.coverage.mean.bw\ color 255,0,0\ longLabel gnomAD Mean Exome Sample Coverage\ parent gnomadExomesAvgCoverage on\ shortLabel Mean Coverage\ subGroups view=eAvg\ track gnomadExomesMeanCoverage\ gnomadGenomesMeanCoverage Mean Coverage bigWig 0 100 gnomAD Mean Genome Sample Coverage 1 100 255 0 0 255 127 127 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.genomes.coverage.mean.bw\ color 255,0,0\ longLabel gnomAD Mean Genome Sample Coverage\ parent gnomadGenomesAvgCoverage on\ shortLabel Mean Coverage\ subGroups view=gAvg\ track gnomadGenomesMeanCoverage\ gnomadExomesMedianCoverage Median Coverage bigWig 0 100 gnomAD Median Exome Sample Coverage 2 100 0 0 255 127 127 255 0 0 24 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.exomes.coverage.median.bw\ color 0,0,255\ longLabel gnomAD Median Exome Sample Coverage\ parent gnomadExomesAvgCoverage off\ shortLabel Median Coverage\ subGroups view=eAvg\ track gnomadExomesMedianCoverage\ gnomadGenomesMedianCoverage Median Coverage bigWig 0 100 gnomAD Median Genome Sample Coverage 1 100 0 0 255 127 127 255 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 0 bigDataUrl /gbdb/hg19/gnomAD/coverage/gnomad.genomes.coverage.median.bw\ color 0,0,255\ longLabel gnomAD Median Genome Sample Coverage\ parent gnomadGenomesAvgCoverage off\ shortLabel Median Coverage\ subGroups view=gAvg\ track gnomadGenomesMedianCoverage\ mgcFullMrna MGC Genes psl Mammalian Gene Collection Full ORF mRNAs 3 100 0 100 0 127 177 127 0 0 0

Description

\ \

\ This track show alignments of human mRNAs from the\ Mammalian Gene Collection\ (MGC) having full-length open reading frames (ORFs) to the genome.\ The goal of the Mammalian Gene Collection is to provide researchers with\ unrestricted access to sequence-validated full-length protein-coding cDNA\ clones for human, mouse, rat, xenopus, and zerbrafish genes.\

\ \

Display Conventions and Configuration

\ \

\ The track follows the display conventions for\ gene prediction\ tracks.\

\ \

\ An optional codon coloring feature is available for quick\ validation and comparison of gene predictions.\ To display codon colors, select the genomic codons option from the\ Color track by codons pull-down menu. For more information\ about this feature, go to the\ \ Coloring Gene Predictions and Annotations by Codon page.\

\ \

Methods

\ \

\ GenBank human MGC mRNAs identified as having full-length ORFs\ were aligned against the genome using blat. When a single mRNA\ aligned in multiple places, the alignment having the highest base identity was\ found. Only alignments having a base identity level within 1% of\ the best and at least 95% base identity with the genomic sequence\ were kept.\

\ \

Credits

\ \

\ The human MGC full-length mRNA track was produced at UCSC from\ mRNA sequence data submitted to\ \ GenBank by the Mammalian Gene Collection project.\

\ \

References

\ \

\ Mammalian Gene Collection project\ references.\

\ \

\ Kent WJ.\ \ BLAT--the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

\ genes 1 baseColorDefault diffCodons\ baseColorUseCds genbank\ baseColorUseSequence genbank\ color 0,100,0\ group genes\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Mammalian Gene Collection Full ORF mRNAs\ parent mgcOrfeomeMrna\ shortLabel MGC Genes\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ track mgcFullMrna\ type psl\ visibility pack\ mgcOrfeomeMrna MGC/ORFeome Genes MGC/ORFeome Full ORF mRNA Clones 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ These tracks show alignments of human mRNAs from the\ Mammalian Gene Collection\ (MGC) and \ ORFeome Collaboration having full-length open reading frames (ORFs) to the genome.\ The goal of the Mammalian Gene Collection is to provide researchers with\ unrestricted access to sequence-validated full-length protein-coding cDNA\ clones for human, mouse, and rat genes. The ORFeome project extended MGC to\ provide additional human, mouse, and zebrafish clones.\

\ \

Display Conventions and Configuration

\ \

\ The track follows the display conventions for\ gene prediction\ tracks.\

\ \

\ An optional codon coloring feature is available for quick\ validation and comparison of gene predictions.\ To display codon colors, select the genomic codons option from the\ Color track by codons pull-down menu. For more information\ about this feature, go to the\ \ Coloring Gene Predictions and Annotations by Codon page.\

\ \

Methods

\ \

\ GenBank human MGC mRNAs identified as having full-length ORFs\ were aligned against the genome using blat. When a single mRNA\ aligned in multiple places, the alignment having the highest base identity was\ found. Only alignments having a base identity level within 1% of\ the best and at least 95% base identity with the genomic sequence\ were kept.\

\ \

Credits

\ \

\ The human MGC full-length mRNA track was produced at UCSC from\ mRNA sequence data submitted to\ \ GenBank by the Mammalian Gene Collection project.\

\ \

\ Visit the ORFeome Collaboration\ \ members page for a list of credits and references.\

\ \

References

\ \

\ Mammalian Gene Collection project\ references.\

\ \

\ Kent WJ.\ \ BLAT--the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

\ genes 0 group genes\ longLabel MGC/ORFeome Full ORF mRNA Clones\ shortLabel MGC/ORFeome Genes\ superTrack on\ track mgcOrfeomeMrna\ visibility hide\ jaxQtlMapped MGI Mouse QTL bed 4 . MGI Mouse Quantitative Trait Loci Coarsely Mapped to Human 0 100 0 0 0 127 127 127 0 0 0 http://www.informatics.jax.org/marker/$$

Description

\

\ This track shows Mouse quantitative trait loci (QTLs) from \ Mouse Genome Informatics (MGI) at the \ Jackson Laboratory \ that have been coarsely mapped by UCSC to the Human genome using \ stringently filtered cross-species alignments. \ A quantitative trait locus (QTL) is a polymorphic locus that contains alleles\ which differentially affect the expression of a continuously distributed \ phenotypic trait. Usually a QTL is a marker described by statistical \ association to quantitative variation in the particular phenotypic trait that\ is thought to be controlled by the cumulative action of alleles at multiple \ loci.

\

\ To map the Mouse QTLs to Human, UCSC's chained and netted blastz\ alignments of Mouse to Human were filtered to retain only those with\ minimum length of 20,000 bases in both Mouse and Human, and minimum \ score of 10,000. This removed many valid-but-short alignments. This\ choice was made because QTLs in general are extremely large and\ approximate regions. After the alignment filtering, UCSC's liftOver\ program was used to map Mouse regions to Human via the filtered\ alignments.

\

\ For the purpose of cross-species mapping, MGI QTLs were divided into\ two categories: QTLs whose genomic coordinates span the entire\ confidence interval (often several million bases), and QTLs for which\ only the STS marker with the peak score was given, resulting in\ genomic coordinates for very small regions (most less than 300 bases).\ QTLs in the latter set were so small as to make mapping impossible in many \ cases, so their coordinates were padded by 50,000 bases before and \ after, for a total size of approximately 100,000 bases, a \ conservative proxy for the unknown confidence interval. The two \ categories of QTL are displayed in subtracks: MGI Mouse QTL for the \ unmodified QTLs and MGI Mouse QTL Padded for the single-marker QTLs \ that were padded to 100,000 bases.\

\

\ To get a sense of how many genomic rearrangments between Mouse and\ Human are in the region of a particular Mouse QTL, you may want to\ view the Human Nets track in the Mouse Feb. 2006 (NCBI36/mm8) genome browser. \ In the position/search box, enter the name of the Mouse QTL of interest.\

\ \

Credits

\

\ Thanks to \ MGI \ at the Jackson Laboratory, \ and Bob Sinclair in particular, for providing these data.

\

\ phenDis 1 compositeTrack on\ group phenDis\ longLabel MGI Mouse Quantitative Trait Loci Coarsely Mapped to Human\ origAssembly hg18\ otherDb mm8\ otherDbTable jaxQtl\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel MGI Mouse QTL\ track jaxQtlMapped\ type bed 4 .\ url http://www.informatics.jax.org/marker/$$\ urlLabel MGI QTL Detail:\ visibility hide\ microsat Microsatellite bed 4 Microsatellites - Di-nucleotide and Tri-nucleotide Repeats 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This track displays regions that are likely to be useful as microsatellite\ markers. These are sequences of at least 15 perfect di-nucleotide and \ tri-nucleotide repeats and tend to be highly polymorphic in the\ population.\

\ \

Methods

\

\ The data shown in this track are a subset of the Simple Repeats track, \ selecting only those \ repeats of period 2 and 3, with 100% identity and no indels and with\ at least 15 copies of the repeat. The Simple Repeats track is\ created using the \ Tandem Repeats Finder. For more information about this \ program, see Benson (1999).

\ \

Credits

\

\ Tandem Repeats Finder was written by \ Gary Benson.

\ \

References

\ \

\ Benson G.\ \ Tandem repeats finder: a program to analyze DNA sequences.\ Nucleic Acids Res. 1999 Jan 15;27(2):573-80.\ PMID: 9862982; PMC: PMC148217\

\ rep 1 group rep\ longLabel Microsatellites - Di-nucleotide and Tri-nucleotide Repeats\ shortLabel Microsatellite\ track microsat\ type bed 4\ visibility hide\ gnomADPextMinorSalivaryGland Minor Salivary Gland bigWig 0 1 gnomAD pext Minor Salivary Gland 0 100 153 187 136 204 221 195 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/MinorSalivaryGland.bw\ color 153,187,136\ longLabel gnomAD pext Minor Salivary Gland\ parent gnomadPext off\ shortLabel Minor Salivary Gland\ track gnomADPextMinorSalivaryGland\ visibility hide\ wgEncodeGisRnaSeqViewMinusRawSignal Minus Raw Signal bed 3 RNA-seq from ENCODE/Genome Institute of Singapore 2 100 0 0 0 127 127 127 0 0 0 expression 1 autoScale on\ longLabel RNA-seq from ENCODE/Genome Institute of Singapore\ maxHeightPixels 100:24:16\ parent wgEncodeGisRnaSeq\ shortLabel Minus Raw Signal\ track wgEncodeGisRnaSeqViewMinusRawSignal\ transformFunc NONE\ view MinusRawSignal\ viewLimits 0:200\ visibility full\ windowingFunction maximum\ wgEncodeCaltechRnaSeqViewMinusSignal Minus Raw Signal bigWig RNA-seq from ENCODE/Caltech 2 100 0 0 0 127 127 127 0 0 0 expression 0 autoScale off\ longLabel RNA-seq from ENCODE/Caltech\ maxHeightPixels 100:24:16\ parent wgEncodeCaltechRnaSeq\ shortLabel Minus Raw Signal\ track wgEncodeCaltechRnaSeqViewMinusSignal\ type bigWig\ view MinusSignal\ viewLimits -15:0\ visibility full\ windowingFunction mean+whiskers\ wgEncodeCshlLongRnaSeqViewMinusSig Minus Signal bed 3 Long RNA-seq from ENCODE/Cold Spring Harbor Lab 2 100 0 0 0 127 127 127 0 0 0 expression 1 autoScale off\ longLabel Long RNA-seq from ENCODE/Cold Spring Harbor Lab\ maxHeightPixels 100:24:16\ maxLimit 3756424\ minLimit 0\ parent wgEncodeCshlLongRnaSeq\ shortLabel Minus Signal\ track wgEncodeCshlLongRnaSeqViewMinusSig\ transformFunc NONE\ view MinusSignal\ viewLimits 1:100\ visibility full\ windowingFunction mean+whiskers\ wgEncodeRikenCageViewMinusSignal Minus Signal bed 3 RNA Subcellular CAGE Localization from ENCODE/RIKEN 2 100 0 0 0 127 127 127 0 0 0 expression 1 autoScale off\ longLabel RNA Subcellular CAGE Localization from ENCODE/RIKEN\ maxHeightPixels 100:24:16\ maxLimit 25183\ maxWindowToDraw 10000000\ minLimit .005\ parent wgEncodeRikenCage\ shortLabel Minus Signal\ track wgEncodeRikenCageViewMinusSignal\ transformFunc NONE\ view MinusRawSignal\ viewLimits 0:5\ visibility full\ windowingFunction mean+whiskers\ wgEncodeGisRnaPetViewMinusRawSig MinusRawSig bed 3 RNA Sub-cellular Localization by Paired-end diTag Sequencing from ENCODE/GIS 2 100 0 0 0 127 127 127 0 0 0 expression 1 longLabel RNA Sub-cellular Localization by Paired-end diTag Sequencing from ENCODE/GIS\ maxHeightPixels 100:24:16\ maxLimit 25183\ minLimit .005\ parent wgEncodeGisRnaPet\ shortLabel MinusRawSig\ track wgEncodeGisRnaPetViewMinusRawSig\ transformFunc NONE\ view v2MinusRawSignal\ viewLimits 0:30\ visibility full\ windowingFunction mean+whiskers\ dhcVcfModern Mod Hum Variants vcfTabix Variant Calls from 11 Modern Human Genome Sequences 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ The Modern Human Variants track shows variant calls made from sequence\ reads of eleven individuals mapped to the human genome. The purpose of\ this track is to put the divergence of the Denisova genome into\ perspective with regard to present-day humans.\

\ \

Methods

\

\ DNA was obtained for each of ten individuals from the \ CEPH-Human Genome Diversity Panel (HGDP):\

    \
  • HGDP00456 (Mbuti)
    • \
  • HGDP00521 (French)
    • \
  • HGDP00542 (Papuan)
    • \
  • HGDP00665 (Sardinian)
    • \
  • HGDP00778 (Han)
    • \
  • HGDP00927 (Yoruba)
    • \
  • HGDP00998 (Karitiana)
    • \
  • HGDP01029 (San)
    • \
  • HGDP01284 (Mandenka)
    • \
  • HGDP01307 (Dai)
    • \
\ DNA was also extracted from a Dinka individual from Sudan (DNK02).\ To minimize biases due to instrument variability, the samples were pooled\ for sequencing, using four barcoded libraries per sample.\ The paired-end reads were aligned to the human genome\ using the Burrows-Wheeler Aligner and potential PCR duplicates\ were filtered using\ Picard.\

\ Genotype calls for single nucleotide variants and small insertions and\ deletions were made using the Unified Genotyper from the\ Genome Analysis Toolkit (GATK), with an additional iteration\ using a modified reference genome in order to reduce reference bias\ (Note 6,\ supplementary online materials of Meyer, 2012).\

\

\ Variant Call Format (VCF) files were enhanced by adding information from\ \ Ensembl Compara EPO alignments of 6 primates and of 35 Eutherian mammals,\ phastCons conservation scores generated using EPO alignments,\ 1000 Genomes Project\ integrated variant call files,\ University of Washington\ background selection scores,\ ENCODE/Duke Uniqueness of 20mers (see the Mappability track),\ segmental duplications from the Eichler lab (see the Segmental Dups track),\ and\ samtools mpileup summaries of mapped reads.\

\ \

Credits

\

\ Thanks to the\ Max Planck Institute for Evolutionary Anthropology\ for providing the variant-only VCF files used for this track.\

\ \

References

\

\ Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de\ Filippo C et al.\ \ A high-coverage genome sequence from an archaic Denisovan individual.\ Science. 2012 Oct 12;338(6104):222-6.\ PMID: 22936568; PMC: PMC3617501;\ supplementary online materials, Note 6.\

\ denisova 1 compositeTrack on\ group denisova\ longLabel Variant Calls from 11 Modern Human Genome Sequences\ maxWindowToDraw 10000000\ shortLabel Mod Hum Variants\ track dhcVcfModern\ type vcfTabix\ visibility hide\ dhcHumDerDenAncAll Modern Derivd All bigBed 4 + Modern Human Derived, Denisova Ancestral 3 100 0 0 0 127 127 127 0 0 0 denisova 1 longLabel Modern Human Derived, Denisova Ancestral\ parent dhcHumDerDenAnc\ shortLabel Modern Derivd All\ track dhcHumDerDenAncAll\ view All\ visibility pack\ dhcHumDerDenAncCcds Modern Derivd CC bigBed 4 + Modern Human Derived, Denisova Ancestral 3 100 0 0 0 127 127 127 0 0 0 denisova 1 longLabel Modern Human Derived, Denisova Ancestral\ parent dhcHumDerDenAnc\ shortLabel Modern Derivd CC\ track dhcHumDerDenAncCcds\ view Ccds\ visibility pack\ dhcHumDerDenAncEns Modern Derivd Ens bigBed 4 + Modern Human Derived, Denisova Ancestral 0 100 0 0 0 127 127 127 0 0 0 denisova 1 longLabel Modern Human Derived, Denisova Ancestral\ parent dhcHumDerDenAnc\ shortLabel Modern Derivd Ens\ track dhcHumDerDenAncEns\ view Ens\ visibility hide\ dhcHumDerDenAncReg Modern Derivd Reg bigBed 4 + Modern Human Derived, Denisova Ancestral 3 100 0 0 0 127 127 127 0 0 0 denisova 1 longLabel Modern Human Derived, Denisova Ancestral\ parent dhcHumDerDenAnc\ shortLabel Modern Derivd Reg\ track dhcHumDerDenAncReg\ view Reg\ visibility pack\ dhcHumDerDenAnc Modern Derived bigBed 4 + Modern Human Derived, Denisova Ancestral 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This track shows mutations in the modern human lineage that rose to\ fixation or near fixation since the split from the last common\ ancestor with Denisovans, along with predicted functional effects from\ Ensembl's\ Variant Effect Predictor (VEP).\

\ \

Methods

\

\ Methods and analysis are described in detail in Note 19 of\ supplementary online materials of (Meyer, 2012).\

\

\ Whole genome\ Enredo-Pecan-Ortheus (EPO) alignments of human,\ chimpanzee, gorilla and orangutan were combined with modern human genotypes\ from the 1000 Genomes Project Phase 1 (1000G) to identify sites that\ are fixed (>99.0% frequency in 1000G) or high frequency (>90.0%\ frequency in 1000G) derived in modern humans and ancestral in\ chimpanzee and at least one other great ape (gorilla or orangutan).\ In order to avoid paralogous regions, human and chimpanzee sequences\ were required to appear in only one EPO alignment block.\ Some "fixed" sites are in dbSNP; these were separated out from fixed\ sites not in dbSNP, so three categories of frequency are displayed:\ Fixed, Fixed+dbSNP, and High Frequency.\

\

\ Various quality filters were applied to Denisova genotypes:\ minimum 40 PHRED genotype likelihood from the\ Genome Analysis Toolkit (GATK);\ minimum 30 RMS map quality score;\ coverage at least 14X and at most 66X;\ no sites in positions identified as systematic errors or\ deemed to be of low quality due to conflicting genotype calls in a\ second iteration of GATK (Note 6,\ supplementary online materials of Meyer, 2012).\

\

\ The derived-in-modern-human sites were intersected with the high-confidence-in-Denisova\ sites and annotated using\ VEP to predict effects on protein structure and\ transcriptional regulation.\

\ \

Credits

\

\ Thanks to the\ Max Planck Institute for Evolutionary Anthropology\ for providing the\ data files used for this track.\

\ \

References

\

\ Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de\ Filippo C et al.\ \ A high-coverage genome sequence from an archaic Denisovan individual.\ Science. 2012 Oct 12;338(6104):222-6.\ PMID: 22936568; PMC: PMC3617501;\ supplementary online materials, Note 19

\ denisova 1 compositeTrack on\ dimensions dimensionX=subset dimensionY=freq\ dragAndDrop subTracks\ group denisova\ longLabel Modern Human Derived, Denisova Ancestral\ shortLabel Modern Derived\ sortOrder subset=+ freq=+\ subGroup1 view View All=All Ccds=Consensus_Coding_Sequence_(CCDS) Ens=Ensembl_Transcripts Reg=Regulatory_Regions\ subGroup2 subset Subset All=All CcdsUtr3=CCDS_3'_UTR CcdsUtr5=CCDS_5'_UTR CcdsFrameshiftCoding=CCDS_Frameshift CcdsInFrameNonsyn=CCDS_In-frame_Non-synonymous CcdsNonsyn=CCDS_Non-synonymous CcdsSplice=CCDS_Splice_Site CcdsZLast_Syn=CCDS_Synonymous DA_RegMotifHighInfo=Reg._Motif:_Highly_Informative_Pos. DB_RegMotif=Regulatory_Motif DC_Reg=Regulatory_Region Utr3=Ensembl_3'_UTR Utr5=Ensembl_5'_UTR FrameshiftCoding=Ensembl_Frameshift InFrameNonsyn=Ensembl_In-frame_Non-synonymous Nonsyn=Ensembl_Non-synonymous Splice=Ensembl_Splice_Site ZLast_Syn=Ensembl_Synonymous\ subGroup3 freq Frequency Fixed=Fixed_(>99%)_in_1000_Genomes_Phase_1 FixedDbSnp=Fixed_(>99%)_in_1000_Genomes_Phase_1_but_in_dbSNP HighFreq=High_Frequency_(>90%)_in_1000_Genomes_Phase_1\ track dhcHumDerDenAnc\ type bigBed 4 +\ visibility hide\ wgEncodeUncBsuProtGencViewmPepMapGcFt modPepMapping Gc bed 3 Proteogenomics Hg19 and GENCODE Mapping from ENCODE/Univ. North Carolina/Boise State Univ. 2 100 0 0 0 127 127 127 1 0 0 expression 1 longLabel Proteogenomics Hg19 and GENCODE Mapping from ENCODE/Univ. North Carolina/Boise State Univ.\ parent wgEncodeUncBsuProtGenc\ scoreFilterLimits 0:1000\ shortLabel modPepMapping Gc\ track wgEncodeUncBsuProtGencViewmPepMapGcFt\ useScore 1\ view mPepMapGcFt\ visibility full\ multiz100way Multiz Align wigMaf 0.0 1.0 Multiz Alignments of 100 Vertebrates 3 100 0 10 100 0 90 10 0 0 0 compGeno 1 altColor 0,90,10\ color 0, 10, 100\ frames multiz100wayFrames\ group compGeno\ irows on\ itemFirstCharCase noChange\ longLabel Multiz Alignments of 100 Vertebrates\ noInherit on\ parent cons100wayViewalign on\ priority 100\ sGroup_Afrotheria loxAfr3 eleEdw1 triMan1 chrAsi1 echTel2 oryAfe1\ sGroup_Birds falChe1 falPer1 ficAlb2 zonAlb1 geoFor1 taeGut2 pseHum1 melUnd1 amaVit1 araMac1 colLiv1 anaPla1 galGal4 melGal1\ sGroup_Euarchontoglires tupChi1 speTri2 jacJac1 micOch1 criGri1 mesAur1 mm10 rn5 hetGla2 cavPor3 chiLan1 octDeg1 oryCun2 ochPri3\ sGroup_Fish tetNig2 fr3 takFla1 oreNil2 neoBri1 hapBur1 mayZeb1 punNye1 oryLat2 xipMac1 gasAcu1 gadMor1 danRer7 astMex1 lepOcu1 petMar2\ sGroup_Laurasiatheria susScr3 vicPac2 camFer1 turTru2 orcOrc1 panHod1 bosTau7 oviAri3 capHir1 equCab2 cerSim1 felCat5 canFam3 musFur1 ailMel1 odoRosDiv1 lepWed1 pteAle1 pteVam1 myoDav1 myoLuc2 eptFus1 eriEur2 sorAra2 conCri1\ sGroup_Mammal dasNov3 monDom5 sarHar1 macEug2 ornAna1\ sGroup_Primate panTro4 gorGor3 ponAbe2 nomLeu3 rheMac3 macFas5 papHam1 chlSab1 calJac3 saiBol1 otoGar3\ sGroup_Sarcopterygii allMis1 cheMyd1 chrPic1 pelSin1 apaSpi1 anoCar2 xenTro7 latCha1\ shortLabel Multiz Align\ speciesCodonDefault hg19\ speciesDefaultOff speTri2 micOch1 criGri1 mesAur1 rn5 hetGla2 cavPor3 chiLan1 octDeg1 oryCun2 ochPri3 susScr3 vicPac2 camFer1 turTru2 orcOrc1 panHod1 bosTau7 oviAri3 capHir1 equCab2 cerSim1 felCat5 musFur1 ailMel1 odoRosDiv1 lepWed1 pteAle1 pteVam1 myoDav1 myoLuc2 eptFus1 eriEur2 sorAra2 conCri1 eleEdw1 triMan1 chrAsi1 echTel2 oryAfe1 dasNov3 sarHar1 macEug2 ornAna1 falChe1 falPer1 ficAlb2 zonAlb1 geoFor1 taeGut2 pseHum1 melUnd1 amaVit1 araMac1 colLiv1 anaPla1 melGal1 allMis1 cheMyd1 chrPic1 pelSin1 apaSpi1 anoCar2 latCha1 tetNig2 fr3 takFla1 oreNil2 neoBri1 hapBur1 mayZeb1 punNye1 oryLat2 xipMac1 gasAcu1 gadMor1 astMex1 lepOcu1 calJac3 chlSab1 gorGor3 jacJac1 macFas5 monDom5 nomLeu3 otoGar3 panTro4 papHam1 ponAbe2 saiBol1 tupChi1 petMar2\ speciesGroups Primate Euarchontoglires Laurasiatheria Afrotheria Mammal Birds Sarcopterygii Fish\ subGroups view=align clade=vert\ summary multiz100waySummary\ track multiz100way\ treeImage phylo/hg19_100way.png\ type wigMaf 0.0 1.0\ multiz46way Multiz Align wigMaf 0.0 1.0 Multiz Alignments of 46 Vertebrates 3 100 0 10 100 0 90 10 0 0 0 compGeno 1 altColor 0,90,10\ color 0, 10, 100\ frames multiz46wayFrames\ group compGeno\ irows on\ itemFirstCharCase noChange\ longLabel Multiz Alignments of 46 Vertebrates\ noInherit on\ parent cons46wayViewalign on\ priority 100\ sGroup_Placental_Mammal tupBel1 mm9 rn4 dipOrd1 cavPor3 speTri1 oryCun2 ochPri2 vicPac1 turTru1 bosTau4 equCab2 felCat3 canFam2 myoLuc1 pteVam1 eriEur1 sorAra1 loxAfr3 proCap1 echTel1 dasNov2 choHof1\ sGroup_Primate panTro2 gorGor1 ponAbe2 rheMac2 papHam1 calJac1 tarSyr1 micMur1 otoGar1\ sGroup_Vertebrate macEug1 monDom5 ornAna1 galGal3 taeGut1 anoCar1 xenTro2 tetNig2 fr2 gasAcu1 oryLat2 danRer6 petMar1\ shortLabel Multiz Align\ speciesCodonDefault hg19\ speciesDefaultOff panTro2 gorGor1 ponAbe2 papHam1 calJac1 tarSyr1 otoGar1 equCab2 micMur1 tupBel1 rn4 dipOrd1 cavPor3 speTri1 oryCun2 ochPri2 sorAra1 eriEur1 felCat3 pteVam1 myoLuc1 turTru1 bosTau4 vicPac1 choHof1 echTel1 dasNov2 macEug1 ornAna1 taeGut1 anoCar1 proCap1 tetNig2 fr2 gasAcu1 oryLat2 petMar1\ speciesGroups Primate Placental_Mammal Vertebrate\ subGroups view=align clade=vert\ summary multiz46waySummary\ track multiz46way\ treeImage phylo/hg19_46way.gif\ type wigMaf 0.0 1.0\ gnomADPextMuscle_Skeletal Muscle-Skeletal bigWig 0 1 gnomAD pext Muscle-Skeletal 0 100 170 170 255 212 212 255 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Muscle_Skeletal.bw\ color 170,170,255\ longLabel gnomAD pext Muscle-Skeletal\ parent gnomadPext off\ shortLabel Muscle-Skeletal\ track gnomADPextMuscle_Skeletal\ visibility hide\ pgNA19735indel MXL NA19735 indel pgSnp MXL NA19735 indel (Complete Genomics) 0 100 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MXL NA19735 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel MXL NA19735 indel\ subGroups view=C_CG id=CG_div_GS19735 type=Indel\ track pgNA19735indel\ nscanGene N-SCAN genePred nscanPep N-SCAN Gene Predictions 0 100 34 139 34 144 197 144 0 0 0

Description

\

\ This track shows gene predictions using the N-SCAN gene structure prediction\ software provided by the Computational Genomics Lab at Washington University \ in St. Louis, MO, USA.\

\ \

Methods

\

\ N-SCAN combines biological-signal modeling in the target genome sequence along\ with information from a multiple-genome alignment to generate de novo gene\ predictions. It extends the TWINSCAN target-informant genome pair to allow for\ an arbitrary number of informant sequences as well as richer models of\ sequence evolution. N-SCAN models the phylogenetic relationships between the\ aligned genome sequences, context-dependent substitution rates, insertions,\ and deletions.\

\

Human N-SCAN Human N-SCAN uses mouse (mm9) as the informant and iterative pseudogene masking.

\ \

Credits

\

\ Thanks to Michael Brent's Computational Genomics Group at Washington \ University St. Louis for providing this data.\

\

\ Special thanks for this implementation of N-SCAN to Aaron Tenney in\ the Brent lab, and Robert Zimmermann, currently at Max F. Perutz\ Laboratories in Vienna, Austria.\

\ \

References

\

\ Gross SS, Brent MR.\ \ Using multiple alignments to improve gene prediction.\ J Comput Biol. 2006 Mar;13(2):379-93.\ PMID: 16597247\

\ \

\ Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK Jr, Hannick LI, Maiti R, Ronning CM,\ Rusch DB, Town CD et al.\ Improving the Arabidopsis genome annotation using maximal transcript \ alignment assemblies.\ Nucleic Acids Res. 2003 Oct 1;31(19):5654-66.\ PMID: 14500829; PMC: PMC206470\

\ \

\ Korf I, Flicek P, Duan D, Brent MR.\ Integrating genomic homology into gene structure prediction.\ Bioinformatics. 2001;17 Suppl 1:S140-8.\ PMID: 11473003\

\ \

\ van Baren MJ, Brent MR.\ Iterative gene prediction and pseudogene removal improves\ genome annotation.\ Genome Res. 2006 May;16(5):678-85.\ PMID: 16651666; PMC: PMC1457044\

\ genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 34,139,34\ group genes\ html ../../nscanGene\ informant Human N-SCAN Human N-SCAN uses mouse (mm9) as the informant and iterative pseudogene masking.\ longLabel N-SCAN Gene Predictions\ parent genePredArchive\ shortLabel N-SCAN\ track nscanGene\ type genePred nscanPep\ visibility hide\ neandertalMethylation Neandertal Methyl bed 9 Neandertal Reconstructed DNA Methylation Map 0 100 0 0 0 127 127 127 0 0 0

Description

\ \ This track shows the reconstructed DNA methylation map of the Neandertal genome,\ derived from bone tissues.\ \

Display conventions and configuration

\ Green to red scaling is used as a rough indicator of methylation.\ Values range from 0% (green, unmethylated) to 100% (red, methylated).\ Data are displayed for CpG positions across the genome.\ \

Methods

\ Gokhman et al. reconstructed the DNA methylation maps of two archaic humans,\ the Neandertal and the Denisovan, based on the natural deamination of cytosines\ in ancient DNA. With time, cytosines (C's) in post-mortem DNA lose their amine\ group (deamination). However, deamination of methylated vs. unmethylated C's\ results in different products - Methylated C's are deaminated with time to T's,\ whereas unmethylated C's are deaminated to U's.\ The U's are later removed during ancient DNA library preparation and as a result,\ a distinct pattern is observed: methylated regions in the genome display high C-->T\ conversion rate, whereas unmethylated regions display a low C-->T conversion rate.\ These patterns were used to reconstruct the full DNA methylation maps of the archaic humans.\ \

Credits

\ This track was produced at UCSC using data generated by Gokhman et al., 2014.\ \

References

\

\ Gokhman D, Lavi E, Prüfer K, Fraga MF, Riancho JA, Kelso J, Pääbo S, Meshorer E,\ Carmel L.\ \ Reconstructing the DNA methylation maps of the Neandertal and the Denisovan.\ Science. 2014 May 2;344(6183):523-7.\ PMID: 24786081\

\ neandertal 1 group neandertal\ itemRgb on\ longLabel Neandertal Reconstructed DNA Methylation Map\ shortLabel Neandertal Methyl\ track neandertalMethylation\ type bed 9\ visibility hide\ ntMito Neandertal Mito psl Neandertal Mitochondrial Sequence (Vi33.16, 2008) 0 100 0 0 0 127 127 127 0 0 1 chrM,

Description

\

\ This track shows the alignment of a complete Neandertal mitochondrial\ sequence to a modern human mitochondrial sequence.\

\

\ Note: the mitochondrion used as the genome browser reference sequence\ "chrM" in hg18 and hg19 is\ NC_001807, which has been deprecated. \ Future human genome browsers will use the revised Cambridge Reference\ Sequence (rCRS) NC_012920.\

\ \

Display Conventions and Configuration

\

\ This track follows the display conventions for \ PSL alignment \ tracks.\ Mismatching bases are highlighted as described\ here.\ Several types of alignment gap may also be colored; for more information, click \ here.\

\ \

Methods

\

\ DNA was extracted from a 38,000-year-old bone and sequenced using \ methods described in Green, et al.\ The Neandertal mitochondrial sequence \ (NC_011137) was downloaded\ from GenBank and aligned to chrM\ (NC_001807) using BLAT.\

\ \

Reference

\

\ Green RE, Malaspinas AS, Krause J, Briggs AW, Johnson PL, Uhler C, Meyer M, \ Good JM, Maricic T, Stenzel U et al.\ A complete \ Neandertal mitochondrial genome sequence determined by high-throughput \ sequencing.\ Cell. 2008 Aug 8;134(3):416-26.\

\ neandertal 1 baseColorDefault diffBases\ baseColorUseSequence seq\ chromosomes chrM\ group neandertal\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Neandertal Mitochondrial Sequence (Vi33.16, 2008)\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel Neandertal Mito\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 100\ track ntMito\ type psl\ visibility hide\ ntSeqReads Neandertal Seq bam Neandertal Sequence Reads 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ The Neandertal Seq track shows Neandertal sequence reads mapped to the human\ genome. The Neandertal sequence was generated from six Neandertal fossils found\ in Croatia, Germany, Spain and Russia.\

\ \

Display Conventions and Configuration

\

\ The sequence reads (query sequences) from each of the six samples are contained\ in separate subtracks. Use the checkboxes to select which samples \ will be displayed in the browser. Click and drag the sample name to\ reorder the subtracks. The order in which the subtracks appear in the subtrack\ list will be the order in which they display in the browser.\

\ The query sequences in the SAM/BAM alignment representation\ are normalized to the + strand of the reference genome\ (see the SAM Format Specification\ for more information on the SAM/BAM file format). If a query sequence was\ originally the reverse of what has been stored and aligned, it will have the\ following\ flag:\ 

\
(0x10) Read is on '-' strand.\

\

\

\ BAM/SAM alignment representations also have tags. Some tags are predefined and others (those beginning\ with X, Y or Z) are defined by the aligner or data submitter. \ The following tag is associated with this track: \

    \
  • AS: Alignment score generated by aligner
    • \
\

\

\ The item labels and display colors of features within this track can be\ configured through the controls at the top of the track description page.\

\
    \
  • Display Read Names: By default, read names are not displayed. To \ display the read names, selected the check box next to "Display read names".\
    • \ \
  • Minimum alignment quality: Excludes alignments with quality less than\ the given number. The default is 0.
    • \ \
  • Color track by bases: By default, mismatching bases are highlighted\ in the display. Change the selection to "item bases" to see all base\ values from the query sequence, or "OFF" to ignore query sequence.\ Click here for additional \ information.
    • \ \
  • Alignment Gap/Insertion Display Options: Click \ here for help with \ these options.\ \
  • Additional coloring modes: Other aspects of the alignments can be\ displayed in color or grayscale.
    • \
      \
    • Color by strand: Alignments on the reverse strand are colored \ dark red, alignments on the forward strand are colored dark blue.
      • \ \
    • Grayscale: Items are shaded according to the chosen method:\ alignment quality or base qualities. The alignment qualities of individual \ items are shaded on a scale of 0 (lightest) to 99 (darkest).\ Base qualities are shaded on a scale of 0 (lightest) to 40 (darkest).\ Alignment quality is the default.
      • \
    \ \
\

\ \

Methods

\

\ The Neandertal sequence was genereated from six Neandertal fossils. Vi33.16\ (54.1% genome coverage), Vi33.25 (46.6%) and Vi33.26 (45.2%) were discovered in\ the Vindija cave in Croatia. Feld1 (0.1%) is from the Neandertal type specimen\ from the Neander Valley in Germany, Sid1253 (0.1%) is from El Sidron cave in\ Asturias, Spain, and Mez1 (2%) is from Mezmaiskaya in the Altai Mountains,\ Russia.

\

\ To increase the fraction of endogenous Neandertal DNA in the sequencing\ libraries, restriction enzymes were used to deplete libraries of microbial DNA.\ This was done by identifying Neandertal sequencing reads whose best alignment\ was to a primate sequence, and selecting enzymes that would differentially cut\ non-primate fragments. These enzymes all contained CpG dinucleotides in their\ recognition sequences, reflecting the particularly low abundance of this\ dinucleotide in mammalian DNA. Sequencing was carried out on the 454 FLX and\ Titanium platforms and the Illumina GA. Neandertal reads were mapped to the\ human genome (hg19) using a custom mapper called\ ANFO. This custom\ alignment program was developed to take into account the characteristics of \ ancient DNA. Following the observation and implementation by Briggs \ et al., ANFO\ uses different substitution matrices for DNA thought to be double-stranded\ versus single-stranded and changes between them if doing so affords a better\ score.\

\ \

Credits

\

\ This track was produced at UCSC using data generated by\ Ed Green.\

\ \

References

\

\ Briggs AW, Stenzel U, Johnson PL, Green RE, Kelso J, Prüfer K, Meyer M, Krause J, Ronan MT,\ Lachmann M et al.\ \ Patterns of damage in genomic DNA sequences from a Neandertal.\ Proc Natl Acad Sci U S A. 2007 Sep 11;104(37):14616-21.\ PMID: 17715061; PMC: PMC1976210\

\ \

\ Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH\ et al.\ \ A draft sequence of the Neandertal genome.\ Science. 2010 May 7;328(5979):710-22.\ PMID: 20448178\

\ neandertal 1 aliQualRange 0:254\ allButtonPair on\ bamColorMode gray\ bamGrayMode aliQual\ baseColorDefault diffBases\ baseColorUseSequence lfExtra\ compositeTrack on\ dimensions dimensionX=sample\ dragAndDrop subTracks\ group neandertal\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Neandertal Sequence Reads\ noColorTag .\ shortLabel Neandertal Seq\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 100\ showNames off\ sortOrder sample=+\ subGroup1 sample Sample Feld1=Feld1 Mez1=Mez1 Sid1253=Sid1253 Vi33dot16=Vi33.16 Vi33dot25=Vi33.25 Vi33dot26=Vi33.26\ track ntSeqReads\ type bam\ visibility hide\ gnomADPextNerve_Tibial Nerve-Tibial bigWig 0 1 gnomAD pext Nerve-Tibial 0 100 255 215 0 255 235 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Nerve_Tibial.bw\ color 255,215,0\ longLabel gnomAD pext Nerve-Tibial\ parent gnomadPext off\ shortLabel Nerve-Tibial\ track gnomADPextNerve_Tibial\ visibility hide\ wgEncodeAwgDnaseUwNhlfUniPk NHLF DNase narrowPeak NHLF DNaseI HS Uniform Peaks from ENCODE/Analysis 1 100 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHLF DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel NHLF DNase\ subGroups tier=a30 cellType=NHLF\ track wgEncodeAwgDnaseUwNhlfUniPk\ laminB1Lads NKI LADs (Tig3) bed 3 NKI LADs (Lamina Associated Domains, Tig3 cells) 0 100 0 0 127 127 127 191 0 0 0

Description

\ \

\ Please see the NKI Nuc Lamina "super-track" link above for description and methods.\

\ regulation 1 color 0,0,127\ group regulation\ longLabel NKI LADs (Lamina Associated Domains, Tig3 cells)\ shortLabel NKI LADs (Tig3)\ superTrack laminB1Super dense\ track laminB1Lads\ type bed 3\ visibility hide\ laminB1Super NKI Nuc Lamina NKI Nuclear Lamina Associated Domains (LaminB1 DamID) 0 100 0 0 0 127 127 127 0 0 0

Overview

\ \
\

Nuclear Lamina and Chromosomal Organization\

\ Model of chromosome organization in interphase, summarizing the main results\ presented in this paper. Large, discrete chromosomal domains are dynamically\ associated (double arrows) with the nuclear lamina, and demarcated by putative\ insulator elements that include CTCF binding sites, promoters that are oriented\ away from the lamina, and CpG islands (Fig. S1, Guelen et al., 2008).\

\ \

\ The architecture of human chromosomes in interphase nuclei is\ still largely unknown. Microscopy studies have indicated that specific\ regions of chromosomes are located in close proximity to the\ nuclear lamina (NL, a dense fibrillar network associated with the inner face \ of the nuclear envelope). \ This has led to the idea that certain genomic elements may be attached to the \ NL, which may contribute to\ the spatial organization of chromosomes inside the nucleus.\ This track represents a high-resolution map of genome-NL interactions in human \ Tig3 lung fibroblasts, \ as determined by the DamID technique. \

\ \

NKI LaminB1 track

\

\ The LaminB1 track shows a high resolution\ map of the interaction sites of the entire genome with\ Lamin B1, (a key NL component) in human fibroblasts.\ This map shows that genome-lamina interactions occur through more than 1,300 \ sharply defined large domains 0.1-10 megabases in size. \ Microscopy evidence indicates that most of these domains are preferentially \ located at nuclear periphery. \ These lamina associated domains (LADs) are characterized by low gene-expression\ levels,\ indicating that LADs represent a repressive chromatin environment. \ The borders of LADs are demarcated by the insulator\ protein CTCF, by promoters that are oriented away from\ LADs, or by CpG islands, suggesting possible mechanisms of\ LAD confinement. \ Taken together, these results demonstrate that\ the human genome is divided into large, discrete domains that are\ units of chromosome organization within the nucleus (see Guelen et al., \ 2008).\

\ \

NKI LADs track

\

The LADs track shows Lamina Associated Domains, or LADs, based on a \ genome-wide DamID profile of LaminB1 (above). \ For the definition of LADs, the full-genome lamin B1 DamID data set was\ binarized by setting tiling array probes with positive DamID log ratios to 1 and\ otherwise to 21. Next, a two-step algorithm was used to identify LADs. First,\ sharp transitions were identified with a sliding edge filter, which calculates the\ difference in average binary values in two windows of 99 neighbouring probes\ immediately left and right of a queried probe. The cutoff for this difference was\ chosen such that the number of edges detected in randomly permuted data sets\ was less than 5% of the number of edges detected in the original lamin B1 data\ set. Second, pairs of adjacent 'left' and 'right' edges were identified that together\ enclosed a region of arbitrary size with at least 70% of the enclosed probes\ reporting a positive log2 ratio. A total of 1,344 regions fulfilled these criteria\ and were termed LADs. In 20 randomly permuted data sets, fewer than 13\ domains were identified by the same criteria. Note that there are also\ lamin-B1-positive domains flanked by one or two gradual or irregular transitions.\ Because it is difficult to define the borders of such domains precisely, these \ 'fuzzy' domains are not analyzed here. \ (see Guelen et al., 2008).\

\ \

Display Conventions and Configuration

\ \

The LaminB1 wiggle track values range from -6.602 to 5.678 and were \ normalized so have a median of 0 and standard deviation of 1.037. The \ default vertical viewing range for the wiggle track was chosen from -2 \ to 2 because this is roughly +/- 2 standard deviations.\

\ \

For an example region see genomic location: \ chr4:35,000,001-45,000,000 (Fig 1, Guelen et al., 2008).\

\ \ \

Methods

\ \

The DamID technique was applied to generate a high-resolution map of NL \ interactions for the entire human genome. \ DamID is based on targeted adenine methylation of DNA sequences that interact \ in vivo with a protein of interest. \

\ \

DamID was performed with lentiviral transduction as described\ (Guelen et al., 2008). In short, a fusion protein consisting\ of Escherichia coli DNA adenine methyltransferase (Dam) fused to human\ LaminB1 was introduced into cultured Tig3 human lung fibroblasts. \ Dam methylates adenines in the sequence GATC, a mark absent in most eukaryotes. \ Here, the LaminB1-Dam fusion protein incorporates\ in the nuclear lamina, as verified by immunofluorescence\ staining. Hence, the sequences near the nuclear lamina are marked with\ a unique methylation tag. The adenine methylation pattern was detected with \ genomic tiling arrays. \ Unfused Dam was used as a\ reference (http://research.nki.nl/vansteensellab/DamID.htm). The data\ shown are the log2-ratio of LaminB1-Dam fusion protein over Dam-only.\

\ \

Sample labelling and hybridizations were performed by NimbleGen\ Inc., on a set of 8 custom-designed oligonucleotide arrays, with a median\ probe spacing of ~750 bp. All probes recognize unique (non-repetitive) sequences. \ The raw data was log2 transformed and loess\ normalized. Between array median/scale normalization was based on 6979\ probes common to all arrays. Replicate arrays were averaged and the\ full data set normalized to genome-wide median.\

\ \

Verification

\ \

The data are based on two independent biological replicates. \ Fluorescence in situ hybridization microscopy confirmed \ that most of the LaminB1 associated regions are preferentially located at \ the nuclear periphery. \ The array platform, the raw \ and normalized data have been deposited at the NCBI Gene Expression Omnibus \ (GEO) (https://www.ncbi.nlm.nih.gov/geo/) under accession number GSE8854.\

\ \

Credits

\ \

The data for this track were generated by Lars Guelen, Ludo Pagie,\ and Bas van Steensel at the Van Steensel Lab, Netherlands Cancer Institute.\

\ \

References

\

\ Guelen L, Pagie L, Brasset E, Meuleman W, Faza MB, Talhout W, Eussen BH, de Klein A, Wessels L, de\ Laat W et al.\ \ Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions.\ Nature. 2008 Jun 12;453(7197):948-51.\ PMID: 18463634\

\ regulation 0 group regulation\ longLabel NKI Nuclear Lamina Associated Domains (LaminB1 DamID)\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel NKI Nuc Lamina\ superTrack on\ track laminB1Super\ numtSeq NumtS Sequence bed 3 . Human NumtS mitochondrial sequence 0 100 0 0 0 127 127 127 0 0 0

Description and display conventions

\ \

NumtS (Nuclear mitochondrial sequences) are mitochondrial fragments inserted in nuclear\ genomic sequences. The most credited hypothesis concerning their generation suggests that in presence\ of mutagenic agents, or under stress conditions, fragments of mtDNA escape from mitochondria, reach\ the nucleus and insert into chromosomes during break repair; although NumtS can also derive from\ duplication of genomic fragments. NumtS may be a cause of contamination during human mtDNA sequencing\ and hence frequent false low heteroplasmic evidences have been reported.The Bioinformatics group \ chaired by M.Attimonelli (University of Bari, Italy) \ has produced the RHNumtS (Reference Human NumtS) compilation annotating more than 500 Human NumtS. \ To allow the scientific community to access the compilation and to perform genomics comparative \ analyses inclusive of the NumtS data, the group has designed the Human NumtS tracks described below.\

\ \

The NumtS tracks show nuclear and mitochondrial regions, the former derived from the application\ of the Lift-Over (Galaxy) tool on the High Score Pairs (HSPs) obtained by aligning the mitochondrial\ reference genome (NC_012920) with the hg18 release of the human genome then converted to hg19.

\ \
    \ \
  1. "NumtS (Nuclear mitochondrial Sequences)" Track \ \

    The "NumtS mitochondrial\ sequences" track shows the mapping of the HSPs returned by BlastN on the nuclear genome. The shading\ of the items reflect the similarity returned by BlastN, and the direction of the arrows is\ concordant with the strand of the alignment. For every item, a link pointing to the mitochondrial\ mapping is provided, thus allowing a fast cross among the NumtS genomic contexts.

    2. \ \ \
  2. "NumtS assembled" Track \ \

    The "NumtS assembled" track shows items obtained by\ assembling HSPs annotated in the "NumtS" track fulfilling the following conditions:

    \ \ \ \
      \ \ \ \
    • The orientation of their alignments must be concordant.
      • \ \ \ \
    • The distance between them must be less than 2 kb, on the mitochondrial genome as \ \ \ \ well as on the nuclear genome.
      • \ \ \
    \ \ \ \ \

    Exceptions for the second condition arise when a long repetitive element is present between\ \ two HSPs.

    3. \ \ \
  3. "NumtS on mitochondrion" Track \ \

    The "NumtS on mitochondrion" track shows the mapping\ of the HSPs on the mitochondrial genome. The shading of the items reflects the similarity returned\ by BlastN, and the direction of the arrows is concordant with the strand of the alignment. For every\ item, a link pointing to the nuclear mapping is provided.

    4. \ \ \
  4. "Human NumtS on mitochondrion SNP" Track \ \

    The "Human NumtS SNP" shows the mapping of\ the HSPs on the mitochondrial genome, with the SNPs which fall within, derived from the comparison\ with the hg19 build. No shading is provided here. For every item, a link pointing to the nuclear\ mapping is provided.

    5. \
\ \

Methods

\ \

NumtS mappings were obtained by running Blast2seq (program: BlastN) between\ each chromosome of the Human Genome (hg18 build) and the human mitochondrial reference sequence (rCRS,\ AC: NC_012920), fixing the e-value threshold to 1e-03. Mapping coordinates were converted from hg18\ to the hg19 assemby by using the Lift-Over software part of Galaxy suite. The assembling of the HSPs \ was performed with spreadsheet interpolation and manual inspection. BED format is used for the first\ three annotation tracks, while for the last one the BAM format is implemented.

\ \

Verification

\ \

NumtS predicted in silico were validated by carrying out PCR amplification\ and sequencing on blood-extracted DNA of a healthy individual of European origin. PCR amplification\ was successful for 275 NumtS and provided amplicons of the expected length. All PCR fragments were\ sequenced on both strands, and submitted to the EMBL databank.

\ \

Furthermore, 541 NumtS were\ validated by merging NumtS nuclear coordinates with HapMap annotations. The analysis was\ carried on eight HapMap individuals (NA18517, NA18507, NA18956, NA19240, NA18555, NA12878, NA19129,\ NA12156). For each sample, clones with a single best concordant placement (according to the fosmid\ end-sequence-pair analysis described in Kidd et al., 2008), have been considered. The analysis\ showed that 541 NumtS (at least 30bp for each one) had been sequenced in such samples.

\ \

Credits

\ \

These data were provided by Domenico Simone, Francesco Maria Calabrese and\ Marcella Attimonelli at the Department of Biochemistry and Molecular Biology "Ernesto Quagliariello"\ (University of Bari, Italy). Primer design was carried out by Francesco Calabrese and Giuseppe\ Mineccia. PCR validation was carried out by Martin Lang, Domenico Simone and Giuseppe Gasparre.\ Merging with HapMap annotations was performed by Domenico Simone.

\ \

References

\ \

\ Kidd JM, Cooper GM, Donahue WF, Hayden HS, Sampas N, Graves T, Hansen N, Teague B, Alkan C,\ Antonacci F et al.\ \ Mapping and sequencing of structural variation from eight human genomes.\ Nature. 2008 May 1;453(7191):56-64.\ PMID: 18451855; PMC: PMC2424287\

\ \

\ Lascaro D, Castellana S, Gasparre G, Romeo G, Saccone C, Attimonelli M.\ \ The RHNumtS compilation: features and bioinformatics approaches to locate and quantify Human\ NumtS.\ BMC Genomics. 2008 Jun 3;9:267.\ PMID: 18522722; PMC: PMC2447851\

\ \

\ Simone D, Calabrese FM, Lang M, Gasparre G, Attimonelli M.\ \ The reference human nuclear mitochondrial sequences compilation validated and implemented on the\ UCSC genome browser.\ BMC Genomics. 2011 Oct 20;12:517.\ PMID: 22013967; PMC: PMC3228558\

\ \ rep 1 compositeTrack on\ group rep\ html numtSeqHg19\ longLabel Human NumtS mitochondrial sequence\ noInherit on\ shortLabel NumtS Sequence\ track numtSeq\ type bed 3 .\ visibility hide\ knownGeneOld6 Old UCSC Genes genePred Previous Version of UCSC Genes 0 100 82 82 160 168 168 207 0 0 0

Description

\

\ The Old UCSC Genes track shows genes from the previous version of\ the UCSC Genes build. This is similar to the current version but\ without explicitly including Rfam or tRNA sequences.\

\

\ The new release has 82,960 total transcripts, compared with 80,922 in\ the previous version. The total number of canonical genes has\ increased from 31,227 to 31,848. Comparing the new gene set with the\ previous version:\

    \
  • 74,657 transcripts did not change between versions.
    • \
  • 88 transcripts were not carried forward to the new version.
    • \
  • 5,556 transcripts are "compatible" with those in the previous set,\ meaning that the two transcripts show consistent splicing. In most cases,\ the old and new transcripts differ in the lengths of their UTRs.
    • \
  • 621 transcripts overlap with those in the previous set but do\ not show consistent splicing, i.e., they contain overlapping introns\ with differing splice sites.\
\

\

\ Read the description\ of how the current version of the UCSC Genes track was built.\

\ \ genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 82,82,160\ group genes\ hgsid on\ longLabel Previous Version of UCSC Genes\ oldToNew kg6ToKg7\ shortLabel Old UCSC Genes\ track knownGeneOld6\ type genePred\ visibility hide\ omimAvSnp OMIM Alleles bed 4 OMIM Allelic Variant Phenotypes 0 100 0 80 0 127 167 127 0 0 0 http://www.omim.org/entry/

Description

\ \
\

NOTE:
\ OMIM is intended for use primarily by physicians and other\ professionals concerned with genetic disorders, by genetics researchers, and\ by advanced students in science and medicine. While the OMIM database is\ open to the public, users seeking information about a personal medical or\ genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal questions. Further, please be\ sure to click through to omim.org for the very latest, as they are continually \ updating data.

\ \

NOTE ABOUT DOWNLOADS:
\ OMIM is the property \ of Johns Hopkins University and is not available for download or mirroring \ by any third party without their permission. Please see \ OMIM\ for downloads.

\
\ \ \

OMIM is a compendium of human genes and genetic phenotypes. The full-text,\ referenced overviews in OMIM contain information on all known Mendelian\ disorders and over 12,000 genes. OMIM is authored and edited at the\ McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University\ School of Medicine, under the direction of Dr. Ada Hamosh. This database\ was initiated in the early 1960s by Dr. Victor A. McKusick as a catalog\ of Mendelian traits and disorders, entitled Mendelian Inheritance\ in Man (MIM).\

\ \

\ The OMIM data are separated into three separate tracks:\

\ \

OMIM Alellic Variant Phenotypes (OMIM Alleles)\
    Variants in the OMIM database that have associated \ dbSNP identifiers.\ \

OMIM Gene Phenotypes (OMIM Genes)\
    The genomic positions of gene entries in the OMIM \ database. The coloring indicates the associated OMIM phenotype map key.\

\ \

OMIM Cytogenetic Loci Phenotypes - Gene Unknown (OMIM Cyto Loci)\
    Regions known to be associated with a phenotype, \ but for which no specific gene is known to be causative. This track \ also includes known multi-gene syndromes.\

\ \
\ \ \

\ This track shows the allelic variants in the Online Mendelian Inheritance in Man\ (OMIM) database that have associated\ dbSNP identifiers.\

\ \

Display Conventions and Configuration

\ \

Genomic positions of OMIM allelic variants are marked by solid blocks, which appear\ as tick marks when zoomed out. \

The details page for each variant displays the allelic variant description, the amino\ acid replacement, and the associated\ dbSNP and/or\ ClinVar identifiers with links to the\ variant's details at those resources.\

\

The descriptions of OMIM entries are shown on the main browser display when Full display\ mode is chosen. In Pack mode, the descriptions are shown when mousing over each entry.\

\ \

Methods

\

\ This track was constructed as follows: \

    \
  • The OMIM allelic variant data file mimAV.txt was obtained from OMIM and\ loaded into the MySQL table omimAv.\
  • The genomic position for each allelic variant in omimAv with an associated\ dbSnp identifier was obtained from the snp151 table. The OMIM AV identifiers and\ their corresponding genomic positions from dbSNP were then loaded into the omimAvSnp\ table.\
\ \

Data Updates

\ This track is automatically updated once a week from OMIM data. The most recent update time is shown\ at the top of the track documentation page.\ \

Data Access

\

\ Because OMIM has only allowed Data queries within individual chromosomes, no download files are\ available from the Genome Browser. Full genome datasets can be downloaded directly from the\ OMIM Downloads page.\ All genome-wide downloads are freely available from OMIM after registration.

\

\ If you need the OMIM data in exactly the format of the UCSC Genome Browser,\ for example if you are running a UCSC Genome Browser local installation (a partial "mirror"),\ please create a user account on omim.org and contact OMIM via\ https://omim.org/contact. Send them your OMIM\ account name and request access to the UCSC Genome Browser 'entitlement'. They will\ then grant you access to a MySQL/MariaDB data dump that contains all UCSC\ Genome Browser OMIM tables.

\

\ UCSC offers queries within chromosomes from\ Table Browser that include a variety\ of filtering options and cross-referencing other datasets using our\ Data Integrator tool.\ UCSC also has an API\ that can be used to retrieve data in JSON format from a particular chromosome range.

\

\ Please refer to our searchable\ mailing list archives\ for more questions and example queries, or our\ Data Access FAQ\ for more information.

\ \

Credits

\

\ Thanks to OMIM and NCBI for the use of their data. This track was constructed by Fan Hsu,\ Robert Kuhn, and Brooke Rhead of the UCSC Genome Bioinformatics Group.

\ \

References

\

\ Amberger J, Bocchini CA, Scott AF, Hamosh A.\ McKusick's Online Mendelian Inheritance in Man (OMIM).\ Nucleic Acids Res. 2009 Jan;37(Database issue):D793-6.\ PMID: 18842627; PMC: PMC2686440\

\ \

\ Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA.\ \ Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic\ disorders.\ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D514-7.\ PMID: 15608251; PMC: PMC539987\

\ phenDis 1 color 0, 80, 0\ group phenDis\ hgsid on\ longLabel OMIM Allelic Variant Phenotypes\ noGenomeReason Distribution restrictions by OMIM. See the track documentation for details. You can download the complete OMIM dataset for free from omim.org\ shortLabel OMIM Alleles\ tableBrowser noGenome omimAv omimAvRepl\ track omimAvSnp\ type bed 4\ url http://www.omim.org/entry/\ visibility hide\ omimLocation OMIM Cyto Loci bed 4 OMIM Cytogenetic Loci Phenotypes - Gene Unknown 0 100 0 80 0 127 167 127 0 0 0 http://www.omim.org/entry/

Description

\ \
\

NOTE:
\ OMIM is intended for use primarily by physicians and other\ professionals concerned with genetic disorders, by genetics researchers, and\ by advanced students in science and medicine. While the OMIM database is\ open to the public, users seeking information about a personal medical or\ genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal questions. Further, please be\ sure to click through to omim.org for the very latest, as they are continually \ updating data.

\ \

NOTE ABOUT DOWNLOADS:
\ OMIM is the property \ of Johns Hopkins University and is not available for download or mirroring \ by any third party without their permission. Please see \ OMIM\ for downloads.

\
\ \ \

OMIM is a compendium of human genes and genetic phenotypes. The full-text,\ referenced overviews in OMIM contain information on all known Mendelian\ disorders and over 12,000 genes. OMIM is authored and edited at the\ McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University\ School of Medicine, under the direction of Dr. Ada Hamosh. This database\ was initiated in the early 1960s by Dr. Victor A. McKusick as a catalog\ of Mendelian traits and disorders, entitled Mendelian Inheritance\ in Man (MIM).\

\ \

\ The OMIM data are separated into three separate tracks:\

\ \

OMIM Alellic Variant Phenotypes (OMIM Alleles)\
    Variants in the OMIM database that have associated \ dbSNP identifiers.\ \

OMIM Gene Phenotypes (OMIM Genes)\
    The genomic positions of gene entries in the OMIM \ database. The coloring indicates the associated OMIM phenotype map key.\

\ \

OMIM Cytogenetic Loci Phenotypes - Gene Unknown (OMIM Cyto Loci)\
    Regions known to be associated with a phenotype, \ but for which no specific gene is known to be causative. This track \ also includes known multi-gene syndromes.\

\ \
\ \ \

\ This track shows the cytogenetic locations of phenotype entries in the Online Mendelian\ Inheritance in Man (OMIM) database for which\ the gene is unknown.\

\ \

Display Conventions and Configuration

\ \

Cytogenetic locations of OMIM entries are displayed as solid\ blocks. The entries are colored according to the OMIM phenotype map key of associated disorders:\ \

    \
  • Lighter Green for phenotype map key 1 OMIM records\ - the disorder has been placed on the map based on its association with\ a gene, but the underlying defect is not known.\
  • Light Green for phenotype map key 2 OMIM records\ - the disorder has been placed on the map by linkage; no mutation has\ been found.\
  • Dark Green for phenotype map key 3 OMIM records\ - the molecular basis for the disorder is known; a mutation has been\ found in the gene.\
  • Purple for phenotype map key 4 OMIM records\ - a contiguous gene deletion or duplication syndrome; multiple genes\ are deleted or duplicated causing the phenotype.\
\

Gene symbols and disease information, when available, are displayed on the details pages.\

\

The descriptions of OMIM entries are shown on the main browser display when Full display\ mode is chosen. In Pack mode, the descriptions are shown when mousing over each entry. Items\ displayed can be filtered according to phenotype map key on the track controls page.\

\ \

Methods

\

\ This track was constructed as follows: \

    \
  • The data file genemap.txt from OMIM was loaded into the MySQL table\ omimGeneMap.\
  • Entries in genemap.txt having disorder info were parsed and loaded into the\ omimPhenotype table. The phenotype map keys (the numbers (1)(2)(3)(4) from the\ disorder columns) were placed into a separate field.\
  • The cytogenetic location data (from the location column in omimGeneMap) were\ parsed and converted into genomic start and end positions based on the cytoBand table.\ These genomic positions, together with the corresponding OMIM IDs, were loaded into the\ omimLocation table.\
  • All entries with no associated phenotype map key and all OMIM gene entries as reported in the\ "OMIM Genes" track were then excluded from the omimLocation table.\
\ \

Data Access

\

\ Because OMIM has only allowed Data queries within individual chromosomes, no download files are\ available from the Genome Browser. Full genome datasets can be downloaded directly from the\ OMIM Downloads page.\ All genome-wide downloads are freely available from OMIM after registration.

\

\ If you need the OMIM data in exactly the format of the UCSC Genome Browser,\ for example if you are running a UCSC Genome Browser local installation (a partial "mirror"),\ please create a user account on omim.org and contact OMIM via\ https://omim.org/contact. Send them your OMIM\ account name and request access to the UCSC Genome Browser 'entitlement'. They will\ then grant you access to a MySQL/MariaDB data dump that contains all UCSC\ Genome Browser OMIM tables.

\

\ UCSC offers queries within chromosomes from\ Table Browser that include a variety\ of filtering options and cross-referencing other datasets using our\ Data Integrator tool.\ UCSC also has an API\ that can be used to retrieve data in JSON format from a particular chromosome range.

\

\ Please refer to our searchable\ mailing list archives\ for more questions and example queries, or our\ Data Access FAQ\ for more information.

\ \

Credits

\

\ Thanks to OMIM and NCBI for the use of their data. This track was constructed by Fan Hsu,\ Robert Kuhn, and Brooke Rhead of the UCSC Genome Bioinformatics Group.

\ \

References

\

\ Amberger J, Bocchini CA, Scott AF, Hamosh A.\ \ McKusick's Online Mendelian Inheritance in Man (OMIM).\ Nucleic Acids Res. 2009 Jan;37(Database issue):D793-6.\ PMID: 18842627; PMC: PMC2686440\

\ \

\ Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA.\ \ Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic\ disorders.\ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D514-7.\ PMID: 15608251; PMC: PMC539987\

\ phenDis 1 color 0, 80, 0\ group phenDis\ hgsid on\ longLabel OMIM Cytogenetic Loci Phenotypes - Gene Unknown\ noGenomeReason Distribution restrictions by OMIM. See the track documentation for details. You can download the complete OMIM dataset for free from omim.org\ shortLabel OMIM Cyto Loci\ tableBrowser noGenome\ track omimLocation\ type bed 4\ url http://www.omim.org/entry/\ visibility hide\ omimGene2 OMIM Genes bed 4 OMIM Gene Phenotypes - Dark Green Can Be Disease-causing 1 100 0 80 0 127 167 127 0 0 0 http://www.omim.org/entry/

Description

\ \
\

NOTE:
\ OMIM is intended for use primarily by physicians and other\ professionals concerned with genetic disorders, by genetics researchers, and\ by advanced students in science and medicine. While the OMIM database is\ open to the public, users seeking information about a personal medical or\ genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal questions. Further, please be\ sure to click through to omim.org for the very latest, as they are continually \ updating data.

\ \

NOTE ABOUT DOWNLOADS:
\ OMIM is the property \ of Johns Hopkins University and is not available for download or mirroring \ by any third party without their permission. Please see \ OMIM\ for downloads.

\
\ \ \

OMIM is a compendium of human genes and genetic phenotypes. The full-text,\ referenced overviews in OMIM contain information on all known Mendelian\ disorders and over 12,000 genes. OMIM is authored and edited at the\ McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University\ School of Medicine, under the direction of Dr. Ada Hamosh. This database\ was initiated in the early 1960s by Dr. Victor A. McKusick as a catalog\ of Mendelian traits and disorders, entitled Mendelian Inheritance\ in Man (MIM).\

\ \

\ The OMIM data are separated into three separate tracks:\

\ \

OMIM Alellic Variant Phenotypes (OMIM Alleles)\
    Variants in the OMIM database that have associated \ dbSNP identifiers.\ \

OMIM Gene Phenotypes (OMIM Genes)\
    The genomic positions of gene entries in the OMIM \ database. The coloring indicates the associated OMIM phenotype map key.\

\ \

OMIM Cytogenetic Loci Phenotypes - Gene Unknown (OMIM Cyto Loci)\
    Regions known to be associated with a phenotype, \ but for which no specific gene is known to be causative. This track \ also includes known multi-gene syndromes.\

\ \
\ \ \

\ This track shows the genomic positions of all gene entries in the Online Mendelian\ Inheritance in Man (OMIM) database.\

\ \

Display Conventions and Configuration

\ \

Genomic locations of OMIM gene entries are displayed as solid blocks. The entries are colored\ according to the associated OMIM phenotype map key (if any):\

    \
  • Lighter Green for phenotype map key 1 OMIM records\ - the disorder has been placed on the map based on its association with\ a gene, but the underlying defect is not known.\
  • Light Green for phenotype map key 2 OMIM records\ - the disorder has been placed on the map by linkage; no mutation has\ been found.\
  • Dark Green for phenotype map key 3 OMIM records\ - the molecular basis for the disorder is known; a mutation has been\ found in the gene.\
  • Purple for phenotype map key 4 OMIM records\ - a contiguous gene deletion or duplication syndrome; multiple genes\ are deleted or duplicated causing the phenotype.\
  • Light Gray for Others\ - no associated OMIM phenotype map key info available.\
\

Gene symbol, phenotype, and inheritance information, when available, are \ displayed on the details page for an item, and links to related RefSeq Genes and UCSC Genes are \ given. The descriptions of the OMIM entries are shown on the main browser display when mousing over\ each entry.\

\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Mode of InheritanceAbbreviation
Autosomal DominantAD
Autosomal RecessiveAR
Digenic Dominant DD
Digenic RecessiveDR
Isolated CasesIC
MitochondrialMi
MultifactorialMu
Pseudoautosomal DominantPADom
Pseudoautosomal RecessivePARec
Somatic MosaicismSomMos
Somatic MutationSMu
X-LinkedXL
X-Linked DominantXLD
X-Linked RecessiveXLR
Y-LinkedYL
\

\

\ Brackets, "[ ]", before the phenotype name indicate "nondiseases," mainly genetic variations that\ lead to apparently abnormal laboratory test values (e.g., dysalbuminemic euthyroidal \ hyperthyroxinemia).\

\

\ Braces, "{ }", indicate mutations that contribute to susceptibility to multifactorial disorders\ (e.g., diabetes, asthma) or to susceptibility to infection (e.g., malaria).\

\

\ Question marks, "?", indicate that the relationship between the phenotype and gene is provisional.\ More details about this relationship are provided in the comment field of the map and in the gene\ and phenotype OMIM entries.\

\ \

Methods

\

\ The mappings displayed in this track are based on OMIM gene entries, their Entrez Gene IDs, and\ the corresponding RefSeq Gene locations:\

    \
  • The data file genemap.txt from OMIM was loaded into the MySQL table omimGeneMap.\
  • The data file mim2gene.txt from OMIM was processed and loaded into the MySQL table omim2gene.\
  • Entries in genemap.txt having disorder info were parsed and loaded into the \ omimPhenotype table.\
  • For each OMIM gene in the omim2gene table, the\ Entrez Gene ID was used to get the\ corresponding RefSeq Gene ID via\ the refLink table, and the RefSeq ID was used to get the genomic location from the\ refGene table.* The OMIM gene IDs and corresponding RefSeq Gene locations were loaded into\ the omimGene2 table, the primary table for this track.\

    \
\

\ *The locations in the refGene table are from alignments of RefSeq Genes to the reference\ genome using BLAT.\

\ \

Data Updates

\ This track is automatically updated once a week from OMIM data. The most recent update time is shown\ at the top of the track documentation page.\ \

Data Access

\

\ Because OMIM has only allowed Data queries within individual chromosomes, no download files are\ available from the Genome Browser. Full genome datasets can be downloaded directly from the\ OMIM Downloads page.\ All genome-wide downloads are freely available from OMIM after registration.

\

\ If you need the OMIM data in exactly the format of the UCSC Genome Browser,\ for example if you are running a UCSC Genome Browser local installation (a partial "mirror"),\ please create a user account on omim.org and contact OMIM via\ https://omim.org/contact. Send them your OMIM\ account name and request access to the UCSC Genome Browser "entitlement". They will\ then grant you access to a MySQL/MariaDB data dump that contains all UCSC\ Genome Browser OMIM tables.

\

\ UCSC offers queries within chromosomes from \ Table Browser that include a variety\ of filtering options and cross-referencing other datasets using our\ Data Integrator tool. \ UCSC also has an API\ that can be used to retrieve data in JSON format from a particular chromosome range.

\

\ Please refer to our searchable\ mailing list archives\ for more questions and example queries, or our\ Data Access FAQ\ for more information.

\ \

Example: Retrieve phenotype, Mode of Inheritance, and other OMIM data within a range

\
    \
  1. Go to Table Browser, make sure the right dataset is selected:\ group: Phenotype and Literature, track: OMIM Genes, table: omimGene2.
    2. \
  2. Define region of interest by entering coordinates or a gene symbol into the "Position" textbox, such as\ chr1:11,166,591-11,322,608 or MTOR, or upload a list.
    3. \
  3. Format your data by setting the "Output format" dropdown to "selected fields from primary \ and related Tables" and click . This \ brings up the data field and linked table selection page.
    4. \
  4. Select chrom, chromStart, chromEnd, and name from omimGene2 table. Then select the related tables omim2gene \ and omimPhenotype and click .\ This brings up the fields of the linked tables, where you can select approvedGeneSymbol,\ omimID, description, omimPhenotypeMapKey, and inhMode.
    5. \
  5. Click on the to proceed to the results page:\ 
    chr1\	11166591\	11322608    601231  Gene: MTOR, Synonyms: FRAP1, SKS, Phenotypes: Smith-Kingsmore syndrome, AD, 3; Focal cortical dysplasia, type II, somatic, 3
\

For a quick link to pre-fill these options, click \ \ this session link.\ \ \

Credits

\

\ Thanks to OMIM and NCBI for the use of their data. This track was\ constructed by Fan Hsu, Robert Kuhn, and Brooke Rhead of the UCSC Genome Bioinformatics Group.

\ \

References

\

\ Amberger J, Bocchini CA, Scott AF, Hamosh A.\ \ McKusick's Online Mendelian Inheritance in Man (OMIM).\ Nucleic Acids Res. 2009 Jan;37(Database issue):D793-6.\ PMID: 18842627; PMC: PMC2686440\

\ \

\ Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA.\ \ Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic\ disorders.\ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D514-7.\ PMID: 15608251; PMC: PMC539987\

\ phenDis 1 color 0, 80, 0\ group phenDis\ hgsid on\ longLabel OMIM Gene Phenotypes - Dark Green Can Be Disease-causing\ noGenomeReason Distribution restrictions by OMIM. See the track documentation for details. You can download the complete OMIM dataset for free from omim.org\ shortLabel OMIM Genes\ tableBrowser noGenome omimGeneMap omimGeneMap2 omimPhenotype omimGeneSymbol omim2gene\ track omimGene2\ type bed 4\ url http://www.omim.org/entry/\ visibility dense\ oreganno ORegAnno bed 4 + Regulatory elements from ORegAnno 0 100 102 102 0 178 178 127 0 0 0

Description

\

\ This track displays literature-curated regulatory regions, transcription\ factor binding sites, and regulatory polymorphisms from\ ORegAnno (Open Regulatory Annotation). For more detailed\ information on a particular regulatory element, follow the link to ORegAnno\ from the details page. \ \

\ \

Display Conventions and Configuration

\ \

The display may be filtered to show only selected region types, such as:

\ \
    \
  • regulatory regions (shown in light blue)
    • \
  • regulatory polymorphisms (shown in dark blue)
    • \
  • transcription factor binding sites (shown in orange)
    • \
  • regulatory haplotypes (shown in red)
    • \
  • miRNA binding sites (shown in blue-green)
    • \
\ \

To exclude a region type, uncheck the appropriate box in the list at the top of \ the Track Settings page.

\ \

Methods

\

\ An ORegAnno record describes an experimentally proven and published regulatory\ region (promoter, enhancer, etc.), transcription factor binding site, or\ regulatory polymorphism. Each annotation must have the following attributes:\

    \
  • A stable ORegAnno identifier.\
  • A valid taxonomy ID from the NCBI taxonomy database.\
  • A valid PubMed reference. \
  • A target gene that is either user-defined, in Entrez Gene or in EnsEMBL.\
  • A sequence with at least 40 flanking bases (preferably more) to allow the\ site to be mapped to any release of an associated genome.\
  • At least one piece of specific experimental evidence, including the\ biological technique used to discover the regulatory sequence. (Currently\ only the evidence subtypes are supplied with the UCSC track.)\
  • A positive, neutral or negative outcome based on the experimental results\ from the primary reference. (Only records with a positive outcome are currently\ included in the UCSC track.)\
\ The following attributes are optionally included:\
    \
  • A transcription factor that is either user-defined, in Entrez Gene\ or in EnsEMBL.\
  • A specific cell type for each piece of experimental evidence, using the\ eVOC cell type ontology.\
  • A specific dataset identifier (e.g. the REDfly dataset) that allows\ external curators to manage particular annotation sets using ORegAnno's\ curation tools.\
  • A "search space" sequence that specifies the region that was\ assayed, not just the regulatory sequence. \
  • A dbSNP identifier and type of variant (germline, somatic or artificial)\ for regulatory polymorphisms.\
\ Mapping to genome coordinates is performed periodically to current genome\ builds by BLAST sequence alignment. \ The information provided in this track represents an abbreviated summary of the \ details for each ORegAnno record. Please visit the official ORegAnno entry\ (by clicking on the ORegAnno link on the details page of a specific regulatory\ element) for complete details such as evidence descriptions, comments,\ validation score history, etc.\

\ \

Credits

\

\ ORegAnno core team and principal contacts: Stephen Montgomery, Obi Griffith, \ and Steven Jones from Canada's Michael Smith Genome Sciences Centre, Vancouver, \ British Columbia, Canada.

\

\ The ORegAnno community (please see individual citations for various\ features): ORegAnno Citation.\ \

References

\

\ Lesurf R, Cotto KC, Wang G, Griffith M, Kasaian K, Jones SJ, Montgomery SB, Griffith OL, Open\ Regulatory Annotation Consortium..\ \ ORegAnno 3.0: a community-driven resource for curated regulatory annotation.\ Nucleic Acids Res. 2016 Jan 4;44(D1):D126-32.\ PMID: 26578589; PMC: PMC4702855\

\ \

\ Griffith OL, Montgomery SB, Bernier B, Chu B, Kasaian K, Aerts S, Mahony S, Sleumer MC, Bilenky M,\ Haeussler M et al.\ \ ORegAnno: an open-access community-driven resource for regulatory annotation.\ Nucleic Acids Res. 2008 Jan;36(Database issue):D107-13.\ PMID: 18006570; PMC: PMC2239002\

\ \

\ Montgomery SB, Griffith OL, Sleumer MC, Bergman CM, Bilenky M, Pleasance ED, \ Prychyna Y, Zhang X, Jones SJ. \ ORegAnno: an open access database and curation system for \ literature-derived promoters, transcription factor binding sites and regulatory variation.\ Bioinformatics. 2006 Mar 1;22(5):637-40.\ PMID: 16397004\

\ \ regulation 1 color 102,102,0\ group regulation\ longLabel Regulatory elements from ORegAnno\ shortLabel ORegAnno\ track oreganno\ type bed 4 +\ visibility hide\ orfeomeMrna ORFeome Clones psl ORFeome Collaboration Gene Clones 3 100 34 139 34 144 197 144 0 0 0

Description

\ \

\ This track show alignments of human clones from the\ \ ORFeome Collaboration. The goal of the project is to be an\ "unrestricted source of fully sequence-validated full-ORF human cDNA\ clones in a format allowing easy transfer of the ORF sequences into\ virtually any type of expression vector. A major goal is to provide\ at least one fully-sequenced full-ORF clone for each human, mouse, and zebrafish gene.\ This track is updated automatically as new clones become available.\

\ \

Display Conventions and Configuration

\ \

\ The track follows the display conventions for\ gene prediction\ tracks.

\ \

Methods

\ \

\ ORFeome human clones were obtained from GenBank and aligned against the\ genome using the blat program. When a single clone aligned in multiple\ places, the alignment having the highest base identity was found. Only alignments\ having a base identity level within 0.5% of the best and at least 96% base\ identity with the genomic sequence were kept.\

\ \

Credits and References

\ \

\ Visit the ORFeome Collaboration\ \ members page for a list of credits and references.\

\ genes 1 baseColorDefault diffCodons\ baseColorUseCds genbank\ baseColorUseSequence genbank\ color 34,139,34\ group genes\ indelDoubleInsert on\ indelQueryInsert on\ longLabel ORFeome Collaboration Gene Clones\ parent mgcOrfeomeMrna\ shortLabel ORFeome Clones\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ track orfeomeMrna\ type psl\ visibility pack\ orphadata Orphanet bigBed 9 + Orphadata: Aggregated Data From Orphanet 0 100 0 0 0 127 127 127 0 0 0 http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=$$

Description

\ \ \
\

\ NOTE:\
These data are for research purposes only. While the Orphadata data is open to the public, \ users seeking information about a personal medical or genetic condition are urged to consult with \ a qualified physician for diagnosis and for answers to personal medical questions.

\ \

UCSC presents these data for use by qualified professionals, and even such professionals \ should use caution in interpreting the significance of information found here. No single data point\ should be taken at face value and such data should always be used in conjunction with as much \ corroborating data as possible. No treatment protocols should be developed or patient advice given \ on the basis of these data without careful consideration of all possible sources of information.

\ \

No attempt to identify individual patients should be undertaken. No one is authorized to \ attempt to identify patients by any means.

\
\
\ \

\ The Orphadata: Aggregated data from Orphanet (Orphanet) track shows genomic positions \ of genes and their association to human disorders, related epidemiological data, and phenotypic\ annotations. As a consortium of 40 countries throughout the world, \ Orphanet\ gathers and improves knowledge regarding rare diseases and maintains the Orphanet rare disease \ nomenclature (ORPHAcode), essential in improving the visibility of rare diseases in health and\ research information systems. The data is updated monthly by Orphanet and updated monthly \ on the UCSC Genome Browser.\

\ \

Display Conventions

\

Mouseover on items shows the gene name, disorder name, modes of inheritance(s) (if available), \ and age(s) of onset (if available). Tracks can be filtered according to gene-disorder association \ types, modes of inheritance, and ages of onset. Clicking an item from the browser will return \ the complete entry, including gene linkouts to Ensembl, OMIM, and HGNC, as well as phenotype information \ using HPO (human phenotype ontology) terms.\ \ For more information on the use of this data, see \ the Orphadata FAQs.

\ \

Data Access

\

The raw data can be explored interactively with the Table Browser, \ or the Data Integrator. \ For automated analysis, the data may be queried from our REST API. \ Please refer to our mailing list archives \ for questions, or our Data Access FAQ \ for more information.\ \

Data is also freely available through \ Orphadata datasets.

\ \

Methods

\

Orphadata files were reformatted at UCSC to the \ bigBed format.

\ \

Credits

\

Thank you to the Orphanet and Orphadata team and to Tiana Pereira, Christopher Lee, \ Daniel Schmelter, and Anna Benet-Pages of the Genome Browser team.

\ \

References

\

\ Pavan S, Rommel K, Mateo Marquina ME, Höhn S, Lanneau V, Rath A.\ \ Clinical Practice Guidelines for Rare Diseases: The Orphanet Database.\ PLoS One. 2017;12(1):e0170365.\ PMID: 28099516; PMC: PMC5242437\

\ \

\ Nguengang Wakap S, Lambert DM, Olry A, Rodwell C, Gueydan C, Lanneau V, Murphy D, Le Cam Y, Rath A.\ \ Estimating cumulative point prevalence of rare diseases: analysis of the Orphanet database.\ Eur J Hum Genet. 2020 Feb;28(2):165-173.\ PMID: 31527858; PMC: PMC6974615\

\ phenDis 1 bedNameLabel OrphaCode\ bigDataUrl /gbdb/hg19/bbi/orphanet/orphadata.bb\ filterValues.assnType Biomarker tested in,Candidate gene tested in,Disease-causing germline mutation(s) (gain of function) in,Disease-causing germline mutation(s) (loss of function) in,Disease-causing germline mutation(s) in,Disease-causing somatic mutation(s) in,Major susceptibility factor in,Modifying germline mutation in,Part of a fusion gene in,Role in the phenotype of\ filterValues.inheritance Autosomal dominant,Autosomal recessive,Mitochondrial inheritance,Multigenic/multifactorial,No data available,Not applicable,Oligogenic,Semi-dominant,Unknown,X-linked dominant,X-linked recessive,Y-linked\ filterValues.onsetList Adolescent,Adult,All ages,Antenatal,Childhood,Elderly,Infancy,Neonatal,No data available\ group phenDis\ itemRgb on\ longLabel Orphadata: Aggregated Data From Orphanet\ mouseOver Gene: $geneSymbol, Disorder: $disorder, Inheritance(s): $inheritance, Onset: $onsetList\ shortLabel Orphanet\ skipEmptyFields on\ skipFields name,score,itemRgb\ track orphadata\ type bigBed 9 +\ url http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=$$\ urlLabel OrphaNet Phenotype Link:\ urls ensemblID="https://grch37.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" pmid="https://pubmed.ncbi.nlm.nih.gov/$$" orphaCode="http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=$$" omim="https://www.omim.org/entry/$$?search=$$&highlight=$$" hgnc="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$"\ xenoRefGene Other RefSeq genePred xenoRefPep xenoRefMrna Non-Human RefSeq Genes 0 100 12 12 120 133 133 187 0 0 0

Description

\

\ This track shows known protein-coding and non-protein-coding genes \ for organisms other than human, taken from the NCBI RNA reference \ sequences collection (RefSeq). The data underlying this track are \ updated weekly.

\ \

Display Conventions and Configuration

\

\ This track follows the display conventions for \ gene prediction \ tracks.\ The color shading indicates the level of review the RefSeq record has \ undergone: predicted (light), provisional (medium), reviewed (dark).

\

\ The item labels and display colors of features within this track can be\ configured through the controls at the top of the track description page. \

    \
  • Label: By default, items are labeled by gene name. Click the \ appropriate Label option to display the accession name instead of the gene\ name, show both the gene and accession names, or turn off the label \ completely.\
  • Codon coloring: This track contains an optional codon coloring \ feature that allows users to quickly validate and compare gene predictions.\ To display codon colors, select the genomic codons option from the\ Color track by codons pull-down menu. For more information about\ this feature, go to the\ \ Coloring Gene Predictions and Annotations by Codon page.\
  • Hide non-coding genes: By default, both the protein-coding and\ non-protein-coding genes are displayed. If you wish to see only the coding\ genes, click this box.\

\ \

Methods

\

\ The RNAs were aligned against the human genome using blat; those\ with an alignment of less than 15% were discarded. When a single RNA aligned \ in multiple places, the alignment having the highest base identity was \ identified. Only alignments having a base identity level within 0.5% of \ the best and at least 25% base identity with the genomic sequence were kept.\

\ \

Credits

\

\ This track was produced at UCSC from RNA sequence data\ generated by scientists worldwide and curated by the \ NCBI RefSeq project.

\ \

References

\

\ Kent WJ.\ \ BLAT--the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

\ \

\ Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J,\ Landrum MJ, McGarvey KM et al.\ \ RefSeq: an update on mammalian reference sequences.\ Nucleic Acids Res. 2014 Jan;42(Database issue):D756-63.\ PMID: 24259432; PMC: PMC3965018\

\ \

\ Pruitt KD, Tatusova T, Maglott DR.\ \ NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.\ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.\ PMID: 15608248; PMC: PMC539979\

\ genes 1 color 12,12,120\ group genes\ longLabel Non-Human RefSeq Genes\ shortLabel Other RefSeq\ track xenoRefGene\ type genePred xenoRefPep xenoRefMrna\ visibility hide\ gnomADPextOvary Ovary bigWig 0 1 gnomAD pext Ovary 0 100 255 170 255 255 212 255 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Ovary.bw\ color 255,170,255\ longLabel gnomAD pext Ovary\ parent gnomadPext off\ shortLabel Ovary\ track gnomADPextOvary\ visibility hide\ gnomADPextPancreas Pancreas bigWig 0 1 gnomAD pext Pancreas 0 100 153 85 34 204 170 144 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Pancreas.bw\ color 153,85,34\ longLabel gnomAD pext Pancreas\ parent gnomadPext off\ shortLabel Pancreas\ track gnomADPextPancreas\ visibility hide\ panelApp PanelApp bigBed 9 + Genomics England PanelApp Diagnostics 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ The\ Genomics England PanelApp\ tracks show gene panels that are related to human disorders. Originally developed to\ aid interpretation of participant genomes in the\ 100,000 Genomes Project, PanelApp is now also being used as the platform for\ achieving consensus on gene panels in the\ \ NHS Genomic Medicine Service (GMS).\ As panels in PanelApp are publicly available, they can also be used by other groups\ and projects. Panels are maintained and updated by\ Genomics England curators.\

\ Genes and genomic\ entities (short tandem repeats/STRs and copy number variants/CNVs)\ have been reviewed by experts to enable a community consensus to be reached on which\ genes and genomic entities should appear on a diagnostics grade panel for each disorder.\ A rating system (confidence level 0 - 3) is used to classify the level of evidence\ supporting association with phenotypes covered by the gene panel in question.\

\

\ The available data tracks are: \

\ \
    \
  • \ Genomics England PanelApp Genes (PanelApp Genes):\
    \ shows genes with evidence supporting a gene-disease relationship.\

    NOTE: Due to a bug in the PanelApp gene API, between \ 5 and 20% of gene entries are missing as of 11/2/22.

    \
    • \
    \
  • \ Genomics England PanelApp STRs (PanelApp STRs):\
    \ shows short tandem repeats that can be disease-causing when a particular number of repeats is\ present.
    • \
    \
  • \ Only on hg38: Genomics England PanelApp Regions (PanelApp CNV Regions):\
    \ shows copy-number variants (region-loss and region-gain) with evidence supporting a gene-disease\ relationship.
    • \
\ \

Display Conventions

\

\ The individual tracks are colored by confidence level:\ \

    \
  • Score 3 (lime green) - High level of evidence \ for this gene-disease association. Demonstrates confidence that this gene should be \ used for genome interpretation.
    • \
  • Score 2 (amber) - Moderate evidence \ for this gene-disease association. This gene should not be used for genomic \ interpretation.
    • \
  • Score 0 or 1 (red) - Not enough evidence \ for this gene-disease association. This gene should not be used for \ genomic interpretation.
    • \
\

\ Mouseover on items shows the gene name, panel associated, mode of inheritance \ (if known), phenotypes related to the gene, and confidence level. Tracks can \ be filtered according to the confidence \ level of disease association evidence. For more information on \ the use of this data, see the PanelApp\ FAQs.\

\ \

Data Access

\

\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API.\

\

\ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ The files for this track are called genes.bb, tandRep.bb and cnv.bb. Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool\ can also be used to obtain only features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/panelApp/genes.bb -chrom=chr21 -start=0 -end=100000000 stdout

\ \

\ Please refer to our\ \ mailing list archives for questions, or our\ \ Data Access FAQ for more information.\

\

\ Data is also freely available on the\ PanelApp API.\

\ \

Updates and archiving of old releases

\

\ This track is updated automatically every week. If you need to access older releases of the data,\ you can download them from our archive directory on the download server. To load them into the browser, select a week on the archive directory, copy the link to a file, go to My Data > Custom Tracks, click "Add custom track", paste the link into the box and click "Submit".\

\ \

Methods

\

\ PanelApp files were reformatted at UCSC to the bigBed format. The script that updates the track is called \ updatePanelApp and can be found in our Github repository.\

\ \

Credits

\

\ Thank you to Genomics England PanelApp, especially Catherine Snow for technical\ coordination and consultation. Thank you to Beagan Nguy, Christopher Lee, Daniel Schmelter,\ Ana Benet-Pagès and Maximilian Haeussler of the Genome Browser team for the creation of the tracks.\

\ \

Reference

\

\ Martin AR, Williams E, Foulger RE, Leigh S, Daugherty LC, Niblock O, Leong IUS, Smith KR,\ Gerasimenko O, Haraldsdottir E et al.\ \ PanelApp crowdsources expert knowledge to establish consensus diagnostic gene panels.\ Nat Genet. 2019 Nov;51(11):1560-1565.\ PMID: 31676867\

\ phenDis 1 compositeTrack on\ group phenDis\ longLabel Genomics England PanelApp Diagnostics\ shortLabel PanelApp\ track panelApp\ type bigBed 9 +\ visibility hide\ wgEncodeHaibTfbsViewPeaks Peaks bed 3 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB 3 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB\ minGrayLevel 3\ minScore 0\ parent wgEncodeHaibTfbs\ scoreFilter 0\ scoreFilterLimits 0:1000\ shortLabel Peaks\ track wgEncodeHaibTfbsViewPeaks\ view Peaks\ visibility pack\ wgEncodeSydhTfbsViewPeaks Peaks bed 3 Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard 3 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard\ pValueFilter 0\ pValueFilterLimits 0:300\ parent wgEncodeSydhTfbs\ qValueFilter 0\ qValueFilterLimits 0:300\ shortLabel Peaks\ signalFilter 0\ signalFilterLimits 0:18241\ track wgEncodeSydhTfbsViewPeaks\ view Peaks\ visibility pack\ wgEncodeUwRepliSeqViewPeaks Peaks bed 3 Replication Timing by Repli-seq from ENCODE/University of Washington 0 100 0 0 0 127 127 127 1 0 0 regulation 1 itemRgb on\ longLabel Replication Timing by Repli-seq from ENCODE/University of Washington\ parent wgEncodeUwRepliSeq\ shortLabel Peaks\ track wgEncodeUwRepliSeqViewPeaks\ useScore 1\ view v2Peaks\ visibility hide\ wgEncodeUwDnaseViewaPeaks Peaks bed 3 + DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington 1 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington\ pValueFilter 0.0\ pValueFilterLimits 1:324\ parent wgEncodeUwDnase\ scoreFilter 0\ scoreFilterLimits 0:1000\ shortLabel Peaks\ track wgEncodeUwDnaseViewaPeaks\ view Peaks\ visibility dense\ wgEncodeUchicagoTfbsPeaks Peaks bed 3 Transcription Factor Binding Sites by Epitope-Tag from ENCODE/UChicago 3 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor Binding Sites by Epitope-Tag from ENCODE/UChicago\ pValueFilter 5\ pValueFilterLimits 0:300\ parent wgEncodeUchicagoTfbs\ qValueFilter 0\ qValueFilterLimits 0:300\ shortLabel Peaks\ signalFilter 0\ signalFilterLimits 0:18241\ track wgEncodeUchicagoTfbsPeaks\ view Peaks\ visibility pack\ wgEncodeUwDgfViewPeaks Peaks bed 3 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington 0 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel DNaseI Digital Genomic Footprinting from ENCODE/University of Washington\ maxWindowToDraw 250000000\ minGrayLevel 3\ pValueFilter 0.0\ pValueFilterLimits 1:324\ parent wgEncodeUwDgf\ scoreFilter 100\ scoreFilterLimits 100:1000\ shortLabel Peaks\ track wgEncodeUwDgfViewPeaks\ view Peaks\ visibility hide\ wgEncodeSunyRipSeqViewPeaks Peaks bed 9 RIP-seq from ENCODE/SUNY Albany 2 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RIP-seq from ENCODE/SUNY Albany\ parent wgEncodeSunyRipSeq\ scoreFilter 0\ scoreFilterLimits 0:1000\ scoreMin 0\ shortLabel Peaks\ track wgEncodeSunyRipSeqViewPeaks\ type bed 9\ view Peaks\ visibility full\ wgEncodeUwHistoneViewPeaks Peaks bed 3 Histone Modifications by ChIP-seq from ENCODE/University of Washington 3 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Histone Modifications by ChIP-seq from ENCODE/University of Washington\ pValueFilter 0.0\ pValueFilterLimits 0:324\ parent wgEncodeUwHistone\ shortLabel Peaks\ track wgEncodeUwHistoneViewPeaks\ view Peaks\ visibility pack\ wgEncodeOpenChromFaireViewPeaks Peaks bed 3 Open Chromatin by FAIRE from ENCODE/OpenChrom(UNC Chapel Hill) 3 100 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Open Chromatin by FAIRE from ENCODE/OpenChrom(UNC Chapel Hill)\ pValueFilter 0.0\ pValueFilterLimits 0:16\ parent wgEncodeOpenChromFaire\ scoreFilter 100\ scoreFilterLimits 100:1000\ scoreMin 600\ shortLabel Peaks\ track wgEncodeOpenChromFaireViewPeaks\ view Peaks\ visibility pack\ wgEncodeUwTfbsViewPeaks Peaks bed 3 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington 3 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington\ pValueFilter 0.0\ pValueFilterLimits 0:324\ parent wgEncodeUwTfbs\ shortLabel Peaks\ track wgEncodeUwTfbsViewPeaks\ view Peaks\ visibility pack\ wgEncodeBroadHistoneViewPeaks Peaks bed 3 Histone Modifications by ChIP-seq from ENCODE/Broad Institute 3 100 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Histone Modifications by ChIP-seq from ENCODE/Broad Institute\ minGrayLevel 3\ pValueFilter 0.0\ pValueFilterLimits 0:100\ parent wgEncodeBroadHistone\ scoreFilter 0\ scoreFilterLimits 0:1000\ scoreMin 250\ shortLabel Peaks\ signalFilter 1.0\ signalFilterLimits 0.0:10000.0\ track wgEncodeBroadHistoneViewPeaks\ view Peaks\ visibility pack\ wgEncodeOpenChromChipViewPeaks Peaks bed 3 Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin) 3 100 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)\ pValueFilter 0.0\ pValueFilterLimits 0:16\ parent wgEncodeOpenChromChip\ scoreFilter 100\ scoreFilterLimits 100:1000\ scoreMin 600\ shortLabel Peaks\ track wgEncodeOpenChromChipViewPeaks\ view Peaks\ visibility pack\ wgEncodeSydhHistoneViewPeaks Peaks bed 3 Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard 3 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard\ pValueFilter 0\ pValueFilterLimits 0:300\ parent wgEncodeSydhHistone\ qValueFilter 0\ qValueFilterLimits 0:300\ shortLabel Peaks\ signalFilter 0\ signalFilterLimits 0:18241\ track wgEncodeSydhHistoneViewPeaks\ view Peaks\ visibility pack\ wgEncodeUncBsuProtGencViewpepMapGcFt pepMapping Gc bed 3 Proteogenomics Hg19 and GENCODE Mapping from ENCODE/Univ. North Carolina/Boise State Univ. 2 100 0 0 0 127 127 127 1 0 0 expression 1 longLabel Proteogenomics Hg19 and GENCODE Mapping from ENCODE/Univ. North Carolina/Boise State Univ.\ parent wgEncodeUncBsuProtGenc\ scoreFilterLimits 0:1000\ shortLabel pepMapping Gc\ track wgEncodeUncBsuProtGencViewpepMapGcFt\ useScore 1\ view pepMapGcFt\ visibility full\ peptideAtlas2014 PeptideAtlas bed 12 Peptide sequences identified from MS spectra of 971 samples by PeptideAtlas 0 100 100 82 160 177 168 207 1 0 0 https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/GetPeptide?atlas_build_id=433&searchWithinThis=Peptide+Name&searchForThis=$$&action=QUERY

Description

\

\ PeptideAtlas collects raw mass \ spectrometry proteomics datasets from laboratories around the world and reprocesses them in a \ uniform bioinformatics workflow using the \ \ Trans-Proteomic Pipeline . \ This track displays peptide identifications from the PeptideAtlas\ August 2014 (Build 433) Human build.\ This build, based on 971 samples containing 420,607,360 spectra, identified 1,021,823 distinct\ peptides, covering 15,136 canonical proteins.

\ \

\ Each PeptideAtlas build comprises a set of reprocessed experiments from a single species or subset of samples (such has human plasma) from a species. Processed results are filtered to a quality level such that there is a 1% false discovery rate at the protein level. All peptide identifications of sufficient quality to enter a build are mapped to the Ensembl genome (v75) using the Ensembl toolkit. Genomic coordinates for all identified peptides to all their Ensembl protein, transcript, and gene mappings, including intron spans, as calculated by the Ensembl toolkit are stored in the PeptideAtlas database.

\

\ All peptide sequences in the August 2014 human build (including unmapped sequences) are available for \ download in FASTA format.

\ \

Methods

\ \

\ Mass spectrometer spectra are compared to theoretical spectra (SEQUEST, X!Tandem) or actual \ spectra (SpectraST) to identify possible peptides.\ These peptide identifications are scored and filtered (using PeptideProphet) to retain \ only the highest scoring identifications.\ The filtered sequences are compared to protein sequence \ databases (for human, Ensembl, IPI, and Swiss-Prot).\ The CDS coordinates relative to protein start of matched sequences are used to\ then calculate genomic coordinates.\ The protein identifications are then clustered and annotated using ProteinProphet,\ and stored in the SBEAMS database, where they \ assigned a unique identifer of the form PAp[8 digit number], e.g. PAp00000001.\ The processing pipeline is summarized in the graphic below.\

\ \ PeptideAtlas Methods\
\ \ \

Credits

\ Eric Deutsch, Zhi Sun, and the PeptideAtlas team at the Institute for Systems Biology, Seattle.\ \

References

\

\ Desiere F, Deutsch EW, King NL, Nesvizhskii AI, Mallick P, Eng J, Chen S, Eddes J, Loevenich SN,\ Aebersold R.\ \ The PeptideAtlas project.\ Nucleic Acids Res. 2006 Jan 1;34(Database issue):D655-8.\ PMID: 16381952; PMC: PMC1347403\

\

\ Farrah T, Deutsch EW, Omenn GS, Sun Z, Watts JD, Yamamoto T, Shteynberg D, Harris MM, Moritz RL.\ \ State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and\ plasma proteomes for the biology- and disease-driven Human Proteome Project.\ J Proteome Res. 2014 Jan 3;13(1):60-75.\ PMID: 24261998; PMC: PMC3951210\

\

\ Keller A, Nesvizhskii AI, Kolker E, Aebersold R.\ \ Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and\ database search.\ Anal Chem. 2002 Oct 15;74(20):5383-92.\ PMID: 12403597\

\ \ Nesvizhskii AI, Keller A, Kolker E, Aebersold R.\ \ A statistical model for identifying proteins by tandem mass spectrometry.\ Anal Chem. 2003 Sep 1;75(17):4646-58.\ PMID: 14632076\

\ \ \ expression 1 color 100, 82, 160\ group expression\ html peptideAtlas\ longLabel Peptide sequences identified from MS spectra of 971 samples by PeptideAtlas\ minGrayLevel 4\ scoreMax 51\ scoreMin 1\ shortLabel PeptideAtlas\ spectrum on\ track peptideAtlas2014\ type bed 12\ url https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/GetPeptide?atlas_build_id=433&searchWithinThis=Peptide+Name&searchForThis=$$&action=QUERY\ urlLabel Link to PeptideAtlas:\ visibility hide\ wgEncodeUwRepliSeqViewPctSignal Percentile Normalized Signal bed 3 Replication Timing by Repli-seq from ENCODE/University of Washington 1 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Replication Timing by Repli-seq from ENCODE/University of Washington\ parent wgEncodeUwRepliSeq\ shortLabel Percentile Normalized Signal\ track wgEncodeUwRepliSeqViewPctSignal\ view v1PctSignal\ viewLimits 15:35\ visibility dense\ windowingFunction mean+whiskers\ pgSnpPGP Personal Genome Project pgSnp Personal Genome Variants 0 100 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Personal Genome Variants\ parent pgSnp\ shortLabel Personal Genome Project\ track pgSnpPGP\ view D_PGP\ visibility hide\ ucscGenePfam Pfam in UCSC Gene bed 12 Pfam Domains in UCSC Genes 0 100 20 0 250 137 127 252 0 0 0 https://www.ebi.ac.uk/interpro/search/text/$$/?page=1#table

Description

\ \

\ Most proteins are composed of one or more conserved functional regions called\ domains. This track shows the high-quality, manually-curated\ \ Pfam-A\ domains found in transcripts located in the UCSC Genes track by the software HMMER3.\

\ \

Display Conventions and Configuration

\ \

\ This track follows the display conventions for\ gene\ tracks.\

\ \

Methods

\ \

\ The sequences from the knownGenePep table (see \ UCSC Genes description page)\ are submitted to the set of Pfam-A HMMs which annotate regions within the\ predicted peptide that are recognizable as Pfam protein domains. These regions\ are then mapped to the transcripts themselves using the\ \ pslMap utility. A complete shell script log for every version of UCSC genes can be found in \ our GitHub repository under \ hg/makeDb/doc/ucscGenes,\ e.g. \ mm10.knownGenes17.csh\ is for the database mm10 and version 17 of UCSC known genes.

\ \

\ Of the several options for filtering out false positives, the "Trusted cutoff (TC)" \ threshold method is used in this track to determine significance. For more information regarding \ thresholds and scores, see the HMMER \ documentation \ and \ results interpretation pages.\

\ \

\ Note: There is currently an undocumented but known HMMER problem which results in lessened \ sensitivity and possible missed searches for some zinc finger domains. Until a fix is released for \ HMMER /PFAM thresholds, please also consult the "UniProt Domains" subtrack of the UniProt track for \ more comprehensive zinc finger annotations.\

\ \

Credits

\ \

\ pslMap was written by Mark Diekhans at UCSC.\

\ \

References

\ \

\ Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G,\ Forslund K et al.\ The Pfam protein families database.\ Nucleic Acids Res. 2010 Jan;38(Database issue):D211-22.\ PMID: 19920124; PMC: PMC2808889\

\ genes 1 color 20,0,250\ group genes\ longLabel Pfam Domains in UCSC Genes\ shortLabel Pfam in UCSC Gene\ track ucscGenePfam\ type bed 12\ url https://www.ebi.ac.uk/interpro/search/text/$$/?page=1#table\ gnomADPextPituitary Pituitary bigWig 0 1 gnomAD pext Pituitary 0 100 170 255 153 212 255 204 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Pituitary.bw\ color 170,255,153\ longLabel gnomAD pext Pituitary\ parent gnomadPext off\ shortLabel Pituitary\ track gnomADPextPituitary\ visibility hide\ platinumGenomes Platinum Genomes vcfTabix Platinum genome variants 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ These tracks show high-confidence "Platinum Genome" variant calls for two individuals,\ NA12877 and NA12878, part of a sequenced 17 member pedigree for family number\ 1463, from the Centre d'Etude du Polymorphisme Humain (CEPH). The hybrid\ track displays a merging of the NA12878 results with variant calls produced by Genome in a\ Bottle, discussed further below. CEPH is an international genetic research center that provides\ a resource of immortalized cell cultures used to map genetic markers, and pedigree 1463\ represents a family lineage from Utah of four grandparents, two parents, and 11 children.\ The whole pedigree was sequenced to 50x depth on a HiSeq 2000 Illumina system, which is\ considered a platinum standard, where platinum refers to the quality and completeness of\ the resulting assembly, such as providing full chromosome scaffolds with phasing and\ haplotypes resolved across the entire genome.

\

\

\ This figure depicts the pedigree of the family sequenced for this study, where the ID for each\ sample is defined by adding the prefix NA128 to each numbered individual, so that 77 = NA12877\ and 78 = NA12878, corresponding to the VCF tracks available in this track set. The dark orange\ individuals indicate sequences used in the analysis methods, whereas the blue represent the\ founder generations (grandparents), which were also sequenced and used in validation steps.\ The genomes of the parent-child trio on the top right side, 91-92-78, were also sequenced\ during Phase I of the 1000 Genomes Project.

\

\ These tracks represent a comprehensive genome-wide set of phased small variants that have been\ validated to high confidence. Sequencing and phasing a larger pedigree, beyond the two parents\ and one child, increases the ability to detect errors and assess the accuracy of more of the\ variants compared to a standard trio analysis. The genetic inheritance data enables creating a more\ comprehensive catalog of "platinum variants" that reflects both high accuracy and\ completeness. These results are significant as a comprehensive set of valid\ single-nucleotide variants (SNVs) and insertions and deletions (indels),\ in both the easy and difficult parts of the genome, provides a vital resource for software\ developers creating the next generation of variant callers, because these are the areas where\ the current methods most need training data to improve their methods. Since every one of the\ variants in this catalog is phased, this data set provides a resource to better assess emerging\ technologies designed to generate valid phasing information. To generate the calls, six analysis\ pipelines to call SNVs and indels were used and merged into one catalog, where the sensitivity of\ the genetic inheritance aided to detect genotyping errors and maximize the chance of only\ including true variants, that might otherwise be removed by suboptimal filtering. Read more\ about the detailed methods in the referenced paper, further describing this variant catalog\ of 4.7 million SNVs plus 0.7 million small (1-50 bp) indels, that are all consistent with\ the pattern of inheritance in the parents and 11 children of this pedigree.

\

\ The hybrid track in this set extends the characterization of NA12878\ by incorporating high confidence calls produced by Genome in a Bottle analysis.\ The resulting merged files contain more comprehensive coverage of variation than either\ set independently, for instance, the hg19 version contains over 80,000 more indels than\ either input set. Read more about the hybrid methods at the following link:\ https://github.com/Illumina/PlatinumGenomes/wiki/Hybrid-truthset

\ \

Data Access

\

\ The VCF files for this track can be obtained from the download server:\ \ https://hgdownload.soe.ucsc.edu/gbdb/hg19/platinumGenomes/.
\ These files were obtained from the Platinum genomes source archive:\ https://s3.eu-central-1.amazonaws.com/platinum-genomes/2017-1.0/ReleaseNotes.txt.\

\ \

Reference

\ \

\ Eberle MA, Fritzilas E, Krusche P, Källberg M, Moore BL, Bekritsky MA, Iqbal Z, Chuang HY,\ Humphray SJ, Halpern AL et al.\ \ A reference data set of 5.4 million phased human variants validated by genetic inheritance from\ sequencing a three-generation 17-member pedigree.\ Genome Res. 2017 Jan;27(1):157-164.\ PMID: 27903644; PMC: PMC5204340\

\ \ varRep 1 compositeTrack on\ configureByPopup off\ dataVersion Release 2017-1.0\ group varRep\ html ../platinumGenomes\ longLabel Platinum genome variants\ shortLabel Platinum Genomes\ track platinumGenomes\ type vcfTabix\ wgEncodeGisRnaSeqViewPlusRawSignal Plus Raw Signal bed 3 RNA-seq from ENCODE/Genome Institute of Singapore 2 100 0 0 0 127 127 127 0 0 0 expression 1 autoScale on\ longLabel RNA-seq from ENCODE/Genome Institute of Singapore\ maxHeightPixels 100:24:16\ parent wgEncodeGisRnaSeq\ shortLabel Plus Raw Signal\ track wgEncodeGisRnaSeqViewPlusRawSignal\ transformFunc NONE\ view PlusRawSignal\ viewLimits 0:200\ visibility full\ windowingFunction maximum\ wgEncodeCaltechRnaSeqViewPlusSignal Plus Raw Signal bigWig RNA-seq from ENCODE/Caltech 2 100 0 0 0 127 127 127 0 0 0 expression 0 autoScale off\ longLabel RNA-seq from ENCODE/Caltech\ maxHeightPixels 100:24:16\ minLimit 0\ parent wgEncodeCaltechRnaSeq\ shortLabel Plus Raw Signal\ track wgEncodeCaltechRnaSeqViewPlusSignal\ type bigWig\ view PlusSignal\ viewLimits 1:10\ visibility full\ windowingFunction mean+whiskers\ wgEncodeCshlLongRnaSeqViewPlusSig Plus Signal bed 3 Long RNA-seq from ENCODE/Cold Spring Harbor Lab 2 100 0 0 0 127 127 127 0 0 0 expression 1 autoScale off\ longLabel Long RNA-seq from ENCODE/Cold Spring Harbor Lab\ maxHeightPixels 100:24:16\ maxLimit 898990\ minLimit 0\ parent wgEncodeCshlLongRnaSeq\ shortLabel Plus Signal\ track wgEncodeCshlLongRnaSeqViewPlusSig\ transformFunc NONE\ view PlusSignal\ viewLimits 1:100\ visibility full\ windowingFunction mean+whiskers\ wgEncodeRikenCageViewPlusSignal Plus Signal bed 3 RNA Subcellular CAGE Localization from ENCODE/RIKEN 2 100 0 0 0 127 127 127 0 0 0 expression 1 autoScale off\ longLabel RNA Subcellular CAGE Localization from ENCODE/RIKEN\ maxHeightPixels 100:24:16\ maxLimit 25183\ maxWindowToDraw 10000000\ minLimit .005\ parent wgEncodeRikenCage\ shortLabel Plus Signal\ track wgEncodeRikenCageViewPlusSignal\ transformFunc NONE\ view PlusRawSignal\ viewLimits 0:5\ visibility full\ windowingFunction mean+whiskers\ wgEncodeGisRnaPetViewPlusRawSig PlusRawSig bed 3 RNA Sub-cellular Localization by Paired-end diTag Sequencing from ENCODE/GIS 2 100 0 0 0 127 127 127 0 0 0 expression 1 longLabel RNA Sub-cellular Localization by Paired-end diTag Sequencing from ENCODE/GIS\ maxHeightPixels 100:24:16\ maxLimit 25183\ minLimit .005\ parent wgEncodeGisRnaPet\ shortLabel PlusRawSig\ track wgEncodeGisRnaPetViewPlusRawSig\ transformFunc NONE\ view v2PlusRawSignal\ viewLimits 0:30\ visibility full\ windowingFunction mean+whiskers\ prs Polygenic Risk Scores bed 3 Polygenic Risk Scores 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ The Polygenic Risk Scores eMERGE track shows variants that are part of selected polygenic risk\ scores for ten common diseases. Polygenic risk scores (PRS) have clinical utility and are the result\ of many years of GWAS studies. A score is given for a combination of SNPs to calculate the risk of\ getting a disease in a healthy population. The risk scores were selected by the NHGRI eMERGE project, and the selection process is described in\ Lennon et al. 2023. Many PRS models were evaluated, and the 9 models shown here\ were selected based on quality and are part of this track:\

\
    \
  • Asthma
    • \
  • Atrial Fibrillation
    • \
  • Breast Cancer
    • \
  • Coronary Heart Disease
    • \
  • Chronic Kidney Disease
    • \
  • Hypercholesterolemia
    • \
  • Prostate Cancer
    • \
  • T1 Diabetes
    • \
  • T2 Diabetes
    • \
\

The BMI (body mass index) model cannot currently be shown on the browser, pending publication.

\ \

Methods

\

\ Text files provided by eMerge were converted to bigBed format. The scripts are available in our\ GitHub repo.\

\ \

Data access

\

\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator. The data can be accessed from scripts\ through our API, the track name is "prsEmerge".\

\ \

\ For automated download and analysis, the genome annotations are stored in files that can be\ obtained from our\ download server. The data is stored in our bigBed\ format. Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool can be used to obtain all features or only features within a given range, e.g.\
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/prsEmerge/t2d.bb -chrom=chr21 -start=0 -end=100000000 stdout

\

\ \

Credits

\

\ Thanks to Elisabeth McNally for advice, to Zia Truong for building this track and to Niall Lennon\ for sharing the data with us.\

\ \

References

\

\ Lennon NJ, Kottyan LC, Kachulis C, Abul-Husn N, Arias J, Belbin G, Below JE, Berndt S, Chung W,\ Cimino JJ et al.\ \ Selection, optimization, and validation of ten chronic disease polygenic risk scores for clinical\ implementation in diverse populations.\ medRxiv. 2023 Jun 5;.\ PMID: 37333246; PMC: PMC10275001\

\ phenDis 1 group phenDis\ longLabel Polygenic Risk Scores\ shortLabel Polygenic Risk Scores\ superTrack on\ track prs\ type bed 3\ genePredArchive Prediction Archive genePred Gene Prediction Archive 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This supertrack is a collection of gene prediction tracks and is composed of the following tracks:\

\
\
AUGUSTUS
\
\ shows ab initio predictions from the program\ AUGUSTUS\ (version 3.1). The predictions are based on the genome sequence alone.
\
Geneid Genes
\
\ shows gene predictions from the\ geneid\ program. Geneid is a program to predict genes in anonymous genomic sequences designed with a\ hierarchical structure.
\
Genscan Genes
\
\ shows predictions from the\ Genscan\ program. The predictions are based on transcriptional, translational and donor/acceptor\ splicing signals as well as the length and compositional distributions of exons, introns and\ intergenic regions.
\
SGP Genes
\
\ shows gene predictions from the\ SGP2 homology-based gene\ prediction program. To predict genes in a genomic query, SGP2 combines geneid predictions with\ tblastx comparisons of the genome of the target species against genomic sequences of other\ species (reference genomes) deemed to be at an appropriate evolutionary distance from the\ target.
\
SIB Genes
\
\ a transcript-based set of gene predictions based on data from RefSeq and\ EMBL/GenBank. The track includes both protein-coding and non-coding transcripts. The coding\ regions are predicted using\ ESTScan.
\
\

\ More information about display conventions, methods, credits, and references can be found on each\ subtrack's description page.

\ genes 1 cartVersion 2\ group genes\ html ../genePredArchive\ longLabel Gene Prediction Archive\ shortLabel Prediction Archive\ superTrack on\ track genePredArchive\ type genePred\ visibility hide\ predictionScoresSuper Prediction Scores Human Prediction Scores 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ The "Prediction Scores" container track includes subtracks showing the results of prediction\ scores.

\ \

BayesDel

\

BayesDel is a deleteriousness meta-score for coding and non-coding variants, single nucleotide\ variants, and small insertion/deletions. The range of the score is from -1.29334 to 0.75731.\ The higher the score, the more likely the variant is pathogenic.

\ \

\ For gene discovery research, a universal cutoff value (0.0692655 with MaxAF, -0.0570105 without\ MaxAF) was obtained by maximizing sensitivity and specificity in classifying ClinVar variants;\ Version 1 (build date 2017-08-24).

\

\ For clinical variant classification, Bayesdel thresholds have been calculated for a variant to\ reach various levels of evidence; please refer to Pejaver et al. 2022 for general application\ of these scores in clinical applications.\

\ \

Display Conventions and Configuration

\ \

BayesDel

\

There are eight subtracks for the BayesDel track: four include pre-computed MaxAF-integrated BayesDel\ scores for missense variants, one for each base. The other four are of the same format, but scores\ are not MaxAF-integrated.

\ \

For SNVs, at each genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing the reference allele,\ (e.g. A to A) is always set to zero.

\ \

Note: There are cases in which a genomic position will have one value missing.\

\ \

When using this track, zoom in until you can see every base pair at the top of the display.\ Otherwise, there are several nucleotides per pixel under your mouse cursor and instead of an actual\ score, the tooltip text will show the average score of all nucleotides under the cursor. This is\ indicated by the prefix "~" in the mouseover.\

\ \

Data Access

\

BayesDel scores are available at the\ BayesDel website.\ \

Methods

\

BayesDel data was converted from the files provided on the\ BayesDel_170824 Database.\ The number 170824 is the date (2017-08-24) the scores were created. Both sets of BayesDel scores are\ available in this database, one integrated MaxAF (named BayesDel_170824_addAF) and one without\ (named BayesDel_170824_noAF). Data conversion was performed using\ \ custom Python scripts.\

\ \

Credits

\

Thanks to the BayesDel team for providing precomputed data, and to Tiana Pereira, Christopher\ Lee, Gerardo Perez, and Anna Benet-Pages of the Genome Browser team.

\ \

References

\

\ Feng BJ.\ \ PERCH: A Unified Framework for Disease Gene Prioritization.\ Hum Mutat. 2017 Mar;38(3):243-251.\ PMID: 27995669; PMC: PMC5299048\

\ \

\ Pejaver V, Byrne AB, Feng BJ, Pagel KA, Mooney SD, Karchin R, O'Donnell-Luria A, Harrison SM,\ Tavtigian SV, Greenblatt MS et al.\ \ Calibration of computational tools for missense variant pathogenicity classification and ClinGen\ recommendations for PP3/BP4 criteria.\ Am J Hum Genet. 2022 Dec 1;109(12):2163-2177.\ PMID: 36413997; PMC: PMC9748256\

\ \

\ Tian Y, Pesaran T, Chamberlin A, Fenwick RB, Li S, Gau CL, Chao EC, Lu HM, Black MH, Qian D.\ \ REVEL and BayesDel outperform other in silico meta-predictors for clinical variant\ classification.\ Sci Rep. 2019 Sep 4;9(1):12752.\ PMID: 31484976; PMC: PMC6726608\

\ phenDis 0 group phenDis\ longLabel Human Prediction Scores\ pennantIcon New red ../goldenPath/newsarch.html#030724 "Released, Mar. 7, 2024"\ shortLabel Prediction Scores\ superTrack on hide\ track predictionScoresSuper\ visibility hide\ problematic Problematic Regions bigBed 3 + Problematic Regions for NGS or Sanger sequencing or very variable regions 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ This track helps call out sections of the genome that often cause problems for bioinformaticians.\ The 12 subtracks identify genomic regions known to cause analysis artifacts for common sequencing\ downstream computations, such as alignment, variant calling, or peak calling. The underlying data was\ imported from the\ NCBI GeT-RM, the \ Genome-in-a-Bottle,\ and Anshul Kundaje's ENCODE Blacklist projects.\

\ \

\ The only exception is the UCSC Unusual Regions subtrack, which contains annotations of \ a few special gene clusters (IGH, IGL, PAR1/2, TCRA, TCRB, etc) and fixed sequences,\ alternate haplotypes, unplaced contigs, pseudo-autosomal regions, and\ mitochondria. These loci can yield alignments with low-quality mapping scores and\ discordant read pairs. This data set\ was manually curated, based on the Genome Browser's assembly\ description, the FAQs about assembly,\ and the NCBI RefSeq "other" annotations\ track data.\

\ \

\ The ENCODE Blacklist subtrack contains a comprehensive set of regions which are troublesome\ for high-throughput Next-Generation Sequencing (NGS) aligners. These regions tend to have a very\ high ratio of multi-mapping to unique mapping reads and high variance in mappability due to\ repetitive elements such as satellite, centromeric and telomeric repeats. \

\ \

\ The Genome-In-A-Bottle (GIAB) track set contains defined regions where it is difficult to\ make a confident call, due to low coverage, systematic sequencing errors, and local alignment\ problems. These regions were identified from sequencing data generated by multiple technologies.\

\ \

\ The NCBI GeT-RM, Genetic Testing Reference Materials, track set contains highly homologous\ gene- and exon-level regions difficult\ or impossible to analyze with standard Sanger or short-read NGS approaches and are relevant to\ current clinical testing. \ \

Display Conventions and Configuration

\ \

\ Each track contains a set of regions of varying length with no special configuration options. \ The UCSC Unusual Regions track has a mouse-over description, all other tracks have at most\ a name field, which can be shown in pack mode. The tracks are usually kept in dense mode.\

\ \

\ The Hide empty subtracks control hides subtracks with no data in the browser window. Changing the browser window by zooming or scrolling may result in the display of a different selection of tracks.\

\ \

Data access

\

\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator.\ \

\ For automated download and analysis, the genome annotation is stored in bigBed files that\ can be downloaded from\ our download server.\ Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool\ can also be used to obtain only features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi/problematic/deadZone.bb -chrom=chr21 -start=0 -end=100000000 stdout

\

\ \

\

Methods

\ \

\ Files were downloaded from the respective databases and converted to bigBed format.\ The procedure is documented in our\ hg19 makeDoc file (search problematic).\

\ \

Credits

\

\ Thanks to Anna Benet-Pages, Max Haeussler, Angie Hinrichs, and Daniel Schmelter\ at the UCSC Genome Browser for planning, building, and testing these tracks. The\ underlying data comes from the \ ENCODE Blacklist, the\ GeT-RM,\ and the\ Genome-in-a-Bottle\ projects.\

\ \

References

\

\ Amemiya HM, Kundaje A, Boyle AP.\ \ The ENCODE Blacklist: Identification of Problematic Regions of the Genome.\ Sci Rep. 2019 Jun 27;9(1):9354.\ PMID: 31249361; PMC: PMC6597582\

\ Zook JM, Chapman B, Wang J, Mittelman D, Hofmann O, Hide W, Salit M.\ \ Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype\ calls.\ Nat Biotechnol. 2014 Mar;32(3):246-51.\ PMID: 24531798\

\

\ Mandelker D, Schmidt RJ, Ankala A, McDonald Gibson K, Bowser M, Sharma H, Duffy E, Hegde M, Santani\ A, Lebo M et al.\ \ Navigating highly homologous genes in a molecular diagnostic setting: a resource for clinical next-\ generation sequencing.\ Genet Med. 2016 Dec;18(12):1282-1289.\ PMID: 27228465\

\ \ \ map 1 compositeTrack on\ group map\ hideEmptySubtracks off\ longLabel Problematic Regions for NGS or Sanger sequencing or very variable regions\ shortLabel Problematic Regions\ track problematic\ type bigBed 3 +\ visibility hide\ gnomADPextProstate Prostate bigWig 0 1 gnomAD pext Prostate 0 100 221 221 221 238 238 238 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Prostate.bw\ color 221,221,221\ longLabel gnomAD pext Prostate\ parent gnomadPext off\ shortLabel Prostate\ track gnomADPextProstate\ visibility hide\ prsEmerge PRS eMERGE bigBed 8 + Polygenic Risk Scores from NHGRI Electronic Medical Records and Genomics (eMERGE) project 1 100 0 0 0 127 127 127 0 0 0

Description

\

\ The Polygenic Risk Scores eMERGE track shows variants that are part of selected polygenic risk\ scores for ten common diseases. Polygenic risk scores (PRS) have clinical utility and are the result\ of many years of GWAS studies. A score is given for a combination of SNPs to calculate the risk of\ getting a disease in a healthy population. The risk scores were selected by the NHGRI eMERGE project, and the selection process is described in\ Lennon et al. 2023. Many PRS models were evaluated, and the 9 models shown here\ were selected based on quality and are part of this track:\

\
    \
  • Asthma
    • \
  • Atrial Fibrillation
    • \
  • Breast Cancer
    • \
  • Coronary Heart Disease
    • \
  • Chronic Kidney Disease
    • \
  • Hypercholesterolemia
    • \
  • Prostate Cancer
    • \
  • T1 Diabetes
    • \
  • T2 Diabetes
    • \
\

The BMI (body mass index) model cannot currently be shown on the browser, pending publication.

\ \

Methods

\

\ Text files provided by eMerge were converted to bigBed format. The scripts are available in our\ GitHub repo.\

\ \

Data access

\

\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator. The data can be accessed from scripts\ through our API, the track name is "prsEmerge".\

\ \

\ For automated download and analysis, the genome annotations are stored in files that can be\ obtained from our\ download server. The data is stored in our bigBed\ format. Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool can be used to obtain all features or only features within a given range, e.g.\
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/prsEmerge/t2d.bb -chrom=chr21 -start=0 -end=100000000 stdout

\

\ \

Credits

\

\ Thanks to Elisabeth McNally for advice, to Zia Truong for building this track and to Niall Lennon\ for sharing the data with us.\

\ \

References

\

\ Lennon NJ, Kottyan LC, Kachulis C, Abul-Husn N, Arias J, Belbin G, Below JE, Berndt S, Chung W,\ Cimino JJ et al.\ \ Selection, optimization, and validation of ten chronic disease polygenic risk scores for clinical\ implementation in diverse populations.\ medRxiv. 2023 Jun 5;.\ PMID: 37333246; PMC: PMC10275001\

\ phenDis 1 compositeTrack on\ dataVersion Received from nlennon@broadinstitute.org, July 13 2023\ exonNumbers off\ html prs\ longLabel Polygenic Risk Scores from NHGRI Electronic Medical Records and Genomics (eMERGE) project\ mouseOver ${effectAllele}: weight ${weight}\ noScoreFilter on\ parent prs\ shortLabel PRS eMERGE\ skipFields reserved\ track prsEmerge\ type bigBed 8 +\ visibility dense\ pgSnpPSU PSU Bushmen pgSnp Personal Genome Variants 3 100 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Personal Genome Variants\ parent pgSnp\ shortLabel PSU Bushmen\ track pgSnpPSU\ view A_PSU\ visibility pack\ qPcrPrimers qPCR Primers bedDetail 14 Human (hg19) Whole Transcriptome qPCR Primers 0 100 0 0 0 127 127 127 0 0 0 http://www.weizmann.ac.il/cgi-bin/USERcompphys/primers/human/extract_primer_by_line.cgi?$$

Description

\

\ This track provides automatically-designed RT-qPCR primers for measuring the abundance of\ human and mouse transcripts using SYBR-based qPCR (qPCR with double-stranded DNA-binding\ reporter dye). The primers were generated by a\ procedure that targets all transcripts and all "possible" exon-exon and intron-exon\ junctions in the human and mouse transcriptomes.\

\

\ Not all consecutive exon-intron-exon triplets generate "possible" primer pairs.\ "Possible" primer pairs are defined as satisfying a set of imposed design rules:\

    \
  1. The first exon-exon junction is not addressed, to avoid problems related to abortive\ transcription.
    2. \
  2. Intron length should be more than 800 bp to avoid problems of double products in\ amplification.
    3. \
  3. Only junction primers are designed: forward and reverse primers must flank the junction.
    4. \
  4. Melting temperature of the primers should be between 60°C and 63°C (optimally\ 60.5°C, according to Breslauer et al., 1986).
    5. \
  5. Primer length should be 18-25 bp.
    6. \
  6. Product size should be 60-125 bp.
    7. \
  7. Primers are designed first for the intron-exon (pre-mRNA) junctions, and the two best primer\ pairs for each junction are chosen.\
  8. Then, for the reverse primer of each pair, two options are\ designed for the corresponding forward primer of the exon-exon (mRNA) junction.
    9. \
  9. The "Primer Mispriming Library" of the primer3 software is used: "human" for the human transcriptome and\ "rodent" for the mouse transcriptome.
    10. \
\

\

\ The track provides easy access to primers for almost all transcripts in the transcriptome,\ eliminating the need for a tedious, error-prone design process.\

\ \

Methods

\

\ The UCSC Genes model\ was used as a reference of the gene structure and the\ primer3 software as the design engine. The\ software goes over all possible exon-exon junctions in the transcriptome and applies our design\ rules/parameters to provide two primer pairs for every "possible" intron-exon junction\ and four pairs for every "possible" exon-exon junction.\

\

Display Conventions

\

\ The primers to amplify pre-mRNA (intron-exon junctions) are shown in red\ and the primers to amplify\ mRNA (exon-exon junctions) in blue. For each pre-mRNA primer pair,\ there are two corresponding mRNA primers (that use the same reverse primer, if possible). Each pair\ has a unique code which stands for the gene name and the junction name. For example, the human pair\ "JAG1_uc002wnw.2_11_1" amplifies pre-mRNA, and the corresponding mRNA primers are\ "JAG1_uc002wnw.2_11_1_1" and "JAG1_uc002wnw.2_11_1_2."

\

\ Using JAG1_uc002wnw.2_11_1_2 to illustrate the naming scheme:\

    \
  • JAG1 is the gene symbol.\
  • uc002wnw.2 is the UCSC Genes identifier of the isoform.\
  • 11 identifies the exon-intron-exon triplet.\
  • 1 is the number (1 or 2) of the intron-exon junction (step 7 in the Description\ section above). The names of primer pairs that cover intron-exon junctions\ end here. For the exon-exon junctions that use the same reverse primer, there is one additional\ number.\
  • 2 is the number (1 or 2) of the exon-exon junction pair (step 8 in the\ Description section above).\
\

\ Clicking on a primer pair\ will take you to a new page with details for that pair. Additional properties for the primer pair,\ including forward and reverse sequence, melting temperature, GC%, and product size, are available\ by clicking on the number next to the instruction "Click here for primer details."\ There is also a\ batch query website available to download details for a large number of primers.\

\ \

References

\

\ Breslauer KJ, Frank R, Blöcker H, Marky LA.\ \ Predicting DNA duplex stability from the base sequence.\ Proc Natl Acad Sci U S A. 1986 Jun;83(11):3746-50.\ PMID: 3459152; PMC: PMC323600\

\ \

\ Rozen S, Skaletsky H.\ \ Primer3 on the WWW for general users and for biologist programmers.\ Methods Mol Biol. 2000;132:365-86.\ PMID: 10547847\

\ \

\ Zeisel A, Yitzhaky A, Bossel Ben-Moshe N, Domany E.\ \ An accessible database for mouse and human whole transcriptome qPCR primers.\ Bioinformatics. 2013 May 15;29(10):1355-6.\ PMID: 23539303\

\ expression 1 group expression\ itemRgb on\ longLabel Human (hg19) Whole Transcriptome qPCR Primers\ noScoreFilter on\ shortLabel qPCR Primers\ track qPcrPrimers\ type bedDetail 14\ url http://www.weizmann.ac.il/cgi-bin/USERcompphys/primers/human/extract_primer_by_line.cgi?$$\ urlLabel Click here for primer details:\ visibility hide\ rao2014Hic Rao 2014 Hi-C hic Hi-C on 7 cell lines from Rao 2014 0 100 0 0 0 127 127 127 0 0 0

Description

\

These tracks provide heatmaps of chromatin folding data from in situ Hi-C experiments on\ the seven cell lines (Rao et al., 2014). Two other cell lines were \ also part of this project, but are not included in this track: CH12-LX (mouse B-lymphoblasts)\ and HeLa (the Henrietta Lacks tumor cell line). Below are the seven types of cells sequenced \ with a short description:

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
GM12878B-Lymphocyte Cells
HMECMammary Epithelial Cells
HUVECUmbilical Endothelial Cells
IMR90Fetal Lung Cells
K562Immortalised Leukemia Cells
KBM7Immortalised Leukemia Cells
NHEKEpidermal Keratinocyte Cells
\

\ The data indicate how many interactions were detected between regions of the genome. A high score\ between two regions suggests that they are probably in close proximity in 3D space within the\ nucleus of a cell. In the track display, this is shown by a more intense color in the heatmap.\

\

Display Conventions

\ This is a composite track with data from seven cell lines. Individual subtrack settings can be\ adjusted by clicking the wrench next to the subtrack name, and all subtracks can be configured\ simultaneously using the track controls at the top of the page. Note that some controls\ (specifically, resolution and normalization options) are only available in the subtrack-specific\ configuration. The proximity data in these tracks are displayed as heatmaps, with high scores (and\ more intense colors) corresponding to closer proximity.\

\

Draw modes

\ There are three display methods available for Hi-C heatmaps: square, triangle, and arc.
\ \

\ Square mode provides a traditional Hi-C display in which chromosome positions are mapped along the\ top-left-to-bottom-right diagonal, and interaction values are plotted on both sides of that diagonal\ to form a square. The upper-left corner of the square corresponds to the left-most position of the\ window in view, while the bottom-right corner corresponds to the right-most position of the window.\

\ The color shade at any point within the square shows the proximity score for two genomic regions:\ the region where a vertical line drawn from that point intersects with the diagonal, and the region\ where a horizontal line from that point intersects with the diagonal. A point directly on the\ diagonal shows the score for how proximal a region is to itself (scores on the diagonal are usually\ quite high unless no data are available). A point at the extreme bottom left of the square shows the\ score for how proximal the left-most position within the window is to the right-most position within\ the window.\

\ In triangle mode, the display is quite similar to square except that only the top half of the square\ is drawn (eliminating the redundancy), and the image is rotated so that the diagonal of the square\ now lies on the horizontal axis. This display consumes less vertical space in the image, although it\ may be more difficult to ascertain exactly which positions correspond to a point within the\ triangle.\

\ In arc mode, simple arcs are drawn between the centers of interacting regions. The color of each arc\ corresponds to the proximity score. Self-interactions are not displayed.\

\

Score normalization settings

\ Score values for this type of display correspond to how close two genomic regions are in 3D space. A\ high score indicates more links were formed between them in the experiment, which suggests that the\ regions are near to each other. A low score suggests that the regions are farther apart. High scores\ are displayed with a more intense color value; low scores are displayed in paler shades.\

\ There are four score values available in this display: NONE, VC, VC_SQRT, and KR. NONE provides raw,\ un-normalized counts for the number of interactions between regions. VC, or Vanilla Coverage,\ normalization (Lieberman-Aiden et al., 2009) and the VC_SQRT variant normalize these count\ values based on the overall count values for each of the two interacting regions. Knight-Ruiz, or\ KR, matrix balancing (Knight and Ruiz, 2013) provides an alternative normalization method where the\ row and column sums of the contact matrix equal 1.\

\ Color intensity in the heatmap goes up to indicate higher scores, but eventually saturates at a\ maximum beyond which all scores share the same color intensity. The value of this maximum score for\ saturation can be set manually by un-checking the "Auto-scale" box. When the\ "Auto-scale" box is checked, it automatically sets the saturation maximum to be double \ (2x) the median score in the current display window.\

\

Resolution settings

\ The resolution for each track is measured in base pairs and represents the size of the bins into\ which proximity data are gathered. The list of available resolutions ranges from 1kb to 10Mb. There\ is also an "Auto" setting, which attempts to use the coarsest resolution that still\ displays at least 500 bins in the current window.

\

\

Methods

\ The protocol described in this paper, in situ Hi-C, is a refinement of an earlier method\ originally called Hi-C and now referred to as dilution Hi-C. Both methods involve cross-linking DNA\ with formaldehyde, cleaving it with a restriction enzyme, forming local bonds between the cleaved\ DNA ends, and sequencing the resulting junctions. The primary refinement for in situ Hi-C is that it\ keeps cell nuclei intact during cross-linking, which reduces the number of spurious contacts in the\ resulting contact matrix. The protocol also takes less time (3 days instead of 7) and can make use\ of higher-resolution restriction enzymes.\

\ The cell lines in this paper were processed using the in situ Hi-C protocol to produce contact\ matrices in the .hic format. We downloaded a subset of those files from the GEO repository at\ https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63525. The files used for\ this track are the "combined.hic" files, which combine the results from multiple\ experimental replicates without imposing a cutoff on the data values. The files are parsed for\ display using the Straw library from\ the Aiden lab at Baylor College of Medicine.\

\ \

Data Access

\ The data for this track can be explored interactively with the Table Browser in the\ interact format. Direct access to the\ raw data files in .hic format can be obtained from GEO at the URL provided in the Methods section or\ from our own download server.\ The following files for this track can be found in the\ /gbdb/hg19/hic/\ subdirectory:\ GSE63525_GM12878_insitu_primary+replicate_combined.hic, GSE63525_HUVEC_combined.hic,\ GSE63525_K562_combined.hic, GSE63525_NHEK_combined.hic, GSE63525_HMEC_combined.hic,\ GSE63525_IMR90_combined.hic, and GSE63525_KBM7_combined.hic. Details on working with .hic files\ can be found at https://www.aidenlab.org/documentation.html.\

\ \

References

\ Knight P, Ruiz D.\ \ A fast algorithm for matrix balancing.\ IMA J Numer Anal. 2013 Jul;33(3):1029-1047.\

\ Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR,\ Sabo PJ, Dorschner MO et al.\ \ Comprehensive mapping of long-range interactions reveals folding principles of the human genome.\ Science. 2009 Oct 9;326(5950):289-93.\ PMID: 19815776; PMC: PMC2858594\

\ Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD,\ Lander ES et al.\ \ A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.\ Cell. 2014 Dec 18;159(7):1665-80.\ PMID: 25497547; PMC: PMC5635824\

\ regulation 1 compositeTrack on\ group regulation\ longLabel Hi-C on 7 cell lines from Rao 2014\ shortLabel Rao 2014 Hi-C\ track rao2014Hic\ type hic\ wgEncodeHaibTfbsViewRawSignal Raw Signal bed 3 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB 2 100 0 0 0 127 127 127 0 0 0 regulation 1 autoScale off\ longLabel Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB\ maxHeightPixels 100:32:16\ maxLimit 47957.00\ minLimit 0\ parent wgEncodeHaibTfbs\ shortLabel Raw Signal\ track wgEncodeHaibTfbsViewRawSignal\ view RawSignal\ viewLimits 0:5\ visibility full\ windowingFunction mean+whiskers\ wgEncodeUwDnaseViewzRaw Raw Signal bed 3 + DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington 2 100 0 0 0 127 127 127 0 0 0 regulation 1 autoScale off\ longLabel DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington\ maxHeightPixels 100:32:16\ maxLimit 127303.00\ minLimit 1\ parent wgEncodeUwDnase\ shortLabel Raw Signal\ track wgEncodeUwDnaseViewzRaw\ view zRSig\ viewLimits 1:100\ visibility full\ windowingFunction mean+whiskers\ wgEncodeUwTfbsViewRawSig Raw Signal bed 3 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington 2 100 0 0 0 127 127 127 0 0 0 regulation 1 autoScale off\ longLabel CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington\ maxHeightPixels 100:32:16\ maxLimit 16000.0\ minLimit -1\ parent wgEncodeUwTfbs\ shortLabel Raw Signal\ track wgEncodeUwTfbsViewRawSig\ view zRSig\ viewLimits 1:10\ visibility full\ windowingFunction mean+whiskers\ ucsfBrainMethylViewCOV Raw Signal bed 3 UCSF Brain DNA Methylation 2 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel UCSF Brain DNA Methylation\ maxLimit 1000\ minLimit 0\ parent ucsfBrainMethyl\ shortLabel Raw Signal\ track ucsfBrainMethylViewCOV\ view COV\ viewLimits 0:100\ visibility full\ wgEncodeUwDgfViewzRaw RawSignal bed 3 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington 0 100 0 0 0 127 127 127 0 0 0 regulation 1 autoScale off\ longLabel DNaseI Digital Genomic Footprinting from ENCODE/University of Washington\ maxHeightPixels 100:32:16\ maxLimit 218367.00\ minLimit 1\ parent wgEncodeUwDgf\ shortLabel RawSignal\ track wgEncodeUwDgfViewzRaw\ view zRaw\ viewLimits 1:250\ visibility hide\ windowingFunction mean+whiskers\ wgEncodeOpenChromFaireRcc7860Pk RCC7860 FAIR Pk narrowPeak RCC 7860 FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 100 0 0 0 127 127 127 1 0 0 regulation 1 longLabel RCC 7860 FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel RCC7860 FAIR Pk\ subGroups view=Peaks cellType=t3RCC7860 treatment=AANONE\ track wgEncodeOpenChromFaireRcc7860Pk\ type narrowPeak\ recombRate Recomb Rate bed 4 + Recombination Rate from deCODE, Marshfield, or Genethon Maps (deCODE default) 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ The recombination rate track represents\ calculated sex-averaged rates of recombination based on either the\ deCODE, Marshfield, or Genethon genetic maps. By default, the deCODE\ map rates are displayed. Female- and male-specific recombination\ rates, as well as rates from the Marshfield and Genethon maps, can\ also be displayed by choosing the appropriate filter option on the track \ description page.

\ \

Methods

\

\ The deCODE genetic map was created at \ deCODE Genetics and is \ based on 5,136 microsatellite markers for 146 families with a total\ of 1,257 meiotic events. For more information on this map, see\ Kong, et al., 2002.

\

\ The Marshfield genetic map was created at the \ Center for Medical Genetics and is based on 8,325 short \ tandem repeat polymorphisms (STRPs) for 8 CEPH families consisting of 134\ individuals with 186 meioses. For more information on this map, see \ Broman et al., 1998.

\

\ The Genethon genetic map was created at \ Genethon and is based on 5,264 microsatellites for 8 CEPH \ families consisting of 134 individuals with 186 meioses. For more information \ on this map, see \ Dib et al., 1996.

\

\ Each base is assigned the recombination rate calculated by\ assuming a linear genetic distance across the immediately flanking\ genetic markers. The recombination rate assigned to each 1 Mb window\ is the average recombination rate of the bases contained within the\ window.

\ \

Using the Filter

\

\ This track has a filter that can be used to change the map or\ gender-specific rate displayed. The filter is located at the top of the track \ description page, which is accessed via the small button to the left of \ the track's graphical display or through the link on the track's control menu.\ To view a particular map or gender-specific rate, select the corresponding\ option from the "Map Distances" pulldown list. By default, the \ browser displays the deCODE sex-averaged distances.

\

\ When you have finished configuring the filter, click the Submit \ button.

\ \

Credits

\

\ This track was produced at UCSC using data that are freely available for\ the Genethon, Marshfield, and deCODE genetic maps (see above links). Thanks\ to all who played a part in the creation of these maps.

\ \

References

\

\ Broman KW, Murray JC, Sheffield VC, White RL, Weber JL.\ \ Comprehensive human genetic maps: individual and sex-specific variation in recombination.\ Am J Hum Genet. 1998 Sep;63(3):861-9.\ PMID: 9718341; PMC: PMC1377399\

\ \

\ Dib C, Fauré S, Fizames C, Samson D, Drouot N, Vignal A, Millasseau P, Marc S, Hazan J, Seboun\ E et al.\ \ A comprehensive genetic map of the human genome based on 5,264 microsatellites.\ Nature. 1996 Mar 14;380(6570):152-4.\ PMID: 8600387\

\ \

\ Kong A, Gudbjartsson DF, Sainz J, Jonsdottir GM, Gudjonsson SA, Richardsson B, Sigurdardottir S,\ Barnard J, Hallbeck B, Masson G et al.\ \ A high-resolution recombination map of the human genome.\ Nat Genet. 2002 Jul;31(3):241-7.\ PMID: 12053178\

\ map 1 exonArrows off\ group map\ longLabel Recombination Rate from deCODE, Marshfield, or Genethon Maps (deCODE default)\ shortLabel Recomb Rate\ track recombRate\ type bed 4 +\ visibility hide\ ucscToRefSeq RefSeq Acc bed 4 RefSeq Accession 0 100 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/nuccore/$$

Description

\

\ This track associates UCSC Genome Browser chromosome names to accession\ identifiers from the NCBI Reference Sequence Database (RefSeq).\

\ \

\ The data were downloaded from the NCBI assembly database.\

\ \

Credits

\

The data for this track was prepared by\ Hiram Clawson.\ map 1 group map\ longLabel RefSeq Accession\ shortLabel RefSeq Acc\ track ucscToRefSeq\ type bed 4\ url https://www.ncbi.nlm.nih.gov/nuccore/$$\ urlLabel RefSeq accession:\ visibility hide\ ghGeneHancer Reg Elem bigBed 9 + GeneHancer Regulatory Elements and Gene Interactions 1 100 0 0 0 127 127 127 0 0 0 http://www.genecards.org/Search/Keyword?queryString=$$ regulation 1 exonArrows off\ itemRgb on\ longLabel GeneHancer Regulatory Elements and Gene Interactions\ mouseOverField elementType\ parent geneHancer\ searchIndex name\ shortLabel Reg Elem\ track ghGeneHancer\ type bigBed 9 +\ url http://www.genecards.org/Search/Keyword?queryString=$$\ urlLabel In GeneCards:\ view a_GH\ visibility dense\ ReMap ReMap ChIP-seq bigBed 9 + ReMap Atlas of Regulatory Regions 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This track represents the ReMap Atlas of regulatory regions, which consists of a\ large-scale integrative analysis of all Public ChIP-seq data for transcriptional\ regulators from GEO, ArrayExpress, and ENCODE. \

\ \

\ Below is a schematic diagram of the types of regulatory regions: \

    \
  • ReMap 2022 Atlas (all peaks for each analyzed data set)
    • \
  • ReMap 2022 Non-redundant peaks (merged similar target)
    • \
  • ReMap 2022 Cis Regulatory Modules
    • \
\

\ \ \ \

Display Conventions and Configuration

\
    \
  • \ Each transcription factor follows a specific RGB color.\
    • \
  • \ ChIP-seq peak summits are represented by vertical bars.\
    • \
  • \ Hsap: A data set is defined as a ChIP/Exo-seq experiment in a given\ GEO/ArrayExpress/ENCODE series (e.g. GSE41561), for a given TF (e.g. ESR1), in\ a particular biological condition (e.g. MCF-7).\
    Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE41561.ESR1.MCF-7).\
    • \
  • \ Atha: The data set is defined as a ChIP-seq experiment in a given series\ (e.g. GSE94486), for a given target (e.g. ARR1), in a particular biological\ condition (i.e. ecotype, tissue type, experimental conditions; e.g.\ Col-0_seedling_3d-6BA-4h).\
    Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE94486.ARR1.Col-0_seedling_3d-6BA-4h).\
    • \
\ \

Methods

\

\ This 4th release of ReMap (2022) presents the analysis of a total of 8,103 \ quality controlled ChIP-seq (n=7,895) and ChIP-exo (n=208) data sets from public\ sources (GEO, ArrayExpress, ENCODE). The ChIP-seq/exo data sets have been mapped\ to the GRCh38/hg38 human assembly. The data set is defined as a ChIP-seq \ experiment in a given series (e.g. GSE46237), for a given TF (e.g. NR2C2), in a\ particular biological condition (i.e. cell line, tissue type, disease state, or\ experimental conditions; e.g. HELA). Data sets were labeled by concatenating\ these three pieces of information, such as GSE46237.NR2C2.HELA. \ \

\

Those merged analyses cover a total of 1,211 DNA-binding proteins\ (transcriptional regulators) such as a variety of transcription factors (TFs),\ transcription co-activators (TCFs), and chromatin-remodeling factors (CRFs) for\ 182 million peaks. \

\ \ \ \

GEO & ArrayExpress

\

\ Public ChIP-seq data sets were extracted from Gene Expression Omnibus (GEO) and\ ArrayExpress (AE) databases. For GEO, the query\ \ '('chip seq' OR 'chipseq' OR\ 'chip sequencing') AND 'Genome binding/occupancy profiling by high throughput\ sequencing' AND 'homo sapiens'[organism] AND NOT 'ENCODE'[project]'\ \ was used to return a list of all potential data sets to analyze, which were then manually \ assessed for further analyses. Data sets involving polymerases (i.e. Pol2 and\ Pol3), and some mutated or fused TFs (e.g. KAP1 N/C terminal mutation, GSE27929)\ were excluded.\

\ \

ENCODE

\

\ Available ENCODE ChIP-seq data sets for transcriptional regulators from the\ ENCODE portal were processed with the\ standardized ReMap pipeline. The list of ENCODE data was retrieved as FASTQ files from the\ ENCODE portal\ using the following filters:\

    \
  • Assay: "ChIP-seq"
    • \
  • Organism: "Homo sapiens"
    • \
  • Target of assay: "transcription factor"
    • \
  • Available data: "fastq" on 2016 June 21st
    • \
\ Metadata information in JSON format and FASTQ files\ were retrieved using the Python requests module.\

\ \

ChIP-seq processing

\

\ Both Public and ENCODE data were processed similarly. Bowtie 2 (PMC3322381) (version 2.2.9) with options -end-to-end -sensitive was used to align all\ reads on the genome. Biological and technical\ replicates for each unique combination of GSE/TF/Cell type or Biological condition\ were used for peak calling. TFBS were identified using MACS2 peak-calling tool\ (PMC3120977) (version 2.1.1.2) in order to follow ENCODE ChIP-seq guidelines,\ with stringent thresholds (MACS2 default thresholds, p-value: 1e-5). An input data\ set was used when available.\

\ \ \

Quality assessment

\

\ To assess the quality of public data sets, a score was computed based on the\ cross-correlation and the FRiP (fraction of reads in peaks) metrics developed by\ the ENCODE Consortium (https://genome.ucsc.edu/ENCODE/qualityMetrics.html). Two\ thresholds were defined for each of the two cross-correlation ratios (NSC,\ normalized strand coefficient: 1.05 and 1.10; RSC, relative strand coefficient:\ 0.8 and 1.0). Detailed descriptions of the ENCODE quality coefficients can be\ found at https://genome.ucsc.edu/ENCODE/qualityMetrics.html. The\ phantompeak tools suite was used\ (https://code.google.com/p/phantompeakqualtools/) to compute\ RSC and NSC.\

\

\ Please refer to the ReMap 2022, 2020, and 2018 publications for more details\ (citation below).\

\ \ \ \

Data Access

\

\ ReMap Atlas of regulatory regions data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ Individual BED files for specific TFs, cells/biotypes, or data sets can be\ found and downloaded on the ReMap website.\

\ \

References

\ \

\ Chèneby J, Gheorghe M, Artufel M, Mathelier A, Ballester B.\ \ ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-\ seq experiments.\ Nucleic Acids Res. 2018 Jan 4;46(D1):D267-D275.\ PMID: 29126285; PMC: PMC5753247\

\

\ Chèneby J, Ménétrier Z, Mestdagh M, Rosnet T, Douida A, Rhalloussi W, Bergon A, Lopez\ F, Ballester B.\ \ ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis\ DNA-binding sequencing experiments.\ Nucleic Acids Res. 2020 Jan 8;48(D1):D180-D188.\ PMID: 31665499; PMC: PMC7145625\

\

\ Griffon A, Barbier Q, Dalino J, van Helden J, Spicuglia S, Ballester B.\ \ Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory\ landscape.\ Nucleic Acids Res. 2015 Feb 27;43(4):e27.\ PMID: 25477382; PMC: PMC4344487\

\

\ Hammal F, de Langen P, Bergon A, Lopez F, Ballester B.\ \ ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an\ integrative analysis of DNA-binding sequencing experiments.\ Nucleic Acids Res. 2022 Jan 7;50(D1):D316-D325.\ PMID: 34751401; PMC: PMC8728178\

\ \ regulation 1 compositeTrack on\ group regulation\ html ../reMap\ longLabel ReMap Atlas of Regulatory Regions\ noScoreFilter on\ shortLabel ReMap ChIP-seq\ track ReMap\ type bigBed 9 +\ visibility hide\ ucscRetroAli5 Retroposed Genes psl Retroposed Genes V5, Including Pseudogenes 0 100 20 0 250 137 127 252 0 0 0

Description

\ \

\ Retrotransposition is a process involving the copying of DNA by a group of\ enzymes that have the ability to reverse transcribe spliced mRNAs, resulting\ in single-exon copies of genes and sometime chimeric genes. RetroGenes can be\ either functional genes that have acquired a promoter from a neighboring gene,\ non-functional pseudogenes, or transcribed pseudogenes.\

\ \

Methods

\ \

\ All mRNAs of a species from GenBank were aligned to the genome using\ lastz\ (Miller lab, Pennsylvania State University). mRNAs that aligned twice in the\ genome (once with introns and once without introns) were initially screened.\ Next, a series of features were scored to determine candidates for retrotransposition\ events. These features included position and length of the polyA tail, degree of\ synteny with mouse, coverage of repetitive elements, number of exons that can still\ be aligned to the retrogene and degree of divergence from the parent gene. Retrogenes\ were classified using a threshold score function that is a linear combination\ of this set of features. Retrogenes in the final set were selected using\ a score threshold based on a ROC plot against the\ Vega annotated pseudogenes.\

\ \

Retrogene Statistics table:

\ \
    \
  • Expression of Retrogene: The following values are possible where\ those that are not expressed are classed as pseudogene or\ mrna:
    • \
      \
    • pseudogene indicates that the parent gene has been annotated\ by one of NCBI's RefSeq, UCSC Genes or Mammalian Gene Collection (MGC).
      • \
    • mrna indicates that the parent gene is a spliced mrna that\ has no annotation in NCBI's RefSeq, UCSC Genes or Mammalian Gene Collection\ (MGC). Therefore, the retrogene is a product of a potentially non-annotated\ parent gene and is a putative pseudogene of that putative parent gene.
      • \
    • expressed weak indicates that there is a mRNA overlapping\ the retrogene, indicating possible transcription. noOrf indicates\ that an ORF was not identified by BESTORF.
      • \
    • expressed indicates that there is a medium level of mRNAs/ESTs\ mapping to the retrogene locus, indicating possible transcription.
      • \
    • expressed strong indicates that there is a mRNA overlapping\ the retrogene, and at least five spliced ESTs indicating probable transcription.\ noOrf indicates that an ORF was not identified by BESTORF.
      • \
    • expressed shuffle indicates that the retrogene was inserted into\ a pre-existing annotated gene.
      • \
    \
  • Score: Based on features of the potential retrogene.
    • \
  • Percent Gene Alignment Coverage (Bases Matching Parent): Shows\ the percentage of the parent gene aligning to this region.
    • \
  • Intron Count: Number of introns is the number of gaps in\ the alignment between the parent mRNA and the genome where gaps are >80 bp and\ the ratio of the mRNA alignment gap to the genome alignment gap is less than\ 30% after removing repeats.
    • \
  • Gap Count: Numer of gaps in the alignment of between the parent\ mRNA and the genome after removing repeats. Gaps are not counted if the gap on\ the mRNA side of the alignment is a similar size to the gap in the genome\ alignment.
    • \
  • BESTORF Score:\ BESTORF (written by Victor Solovyev) predicts potential open reading\ frames (ORFs) in mRNAs/ESTs with very high accuracy using a Markov chain model of coding\ regions and a probabilistic model of translation start codon potential. The score threshold\ for finding an ORF is 50 (Jim Kent, personal communication).
    • \
\ \

Break in Orthology table:

\ \

\ Retrogenes inserted into the genome since the human/mouse divergence show\ a break in the mouse genome syntenic net alignments to the human genome.\ The percentage break represents the portion of the genome that is missing in\ each species relative to the reference genome (human hg19) at the retrogene\ locus as defined by syntenic alignment nets. Breaks in orthology with mouse\ and dog tend to be due to genomic insertions in the primate lineage. Relative\ orthology of dog/human and rhesus macque/human nets are used to avoid false\ positives due to deletions in the mouse genome. Older retrogenes will not show\ a break in orthology, so this feature is weighted lower than other features when\ scoring putative retrogenes.\

\ \

\ These features can be downloaded from the table retroMrnaInfo in many formats using\ the Table Browser option from the Tools menu in the top blue navigation bar.\

\ \

Credits

\ \

\ The RetroFinder program and browser track were developed by\ Robert Baertsch at UCSC.\

\ \ \

References

\ \

\ Baertsch R, Diekhans M, Kent WJ, Haussler D, Brosius J.\ \ Retrocopy contributions to the evolution of the human genome.\ BMC Genomics. 2008 Oct 8;9:466.\ PMID: 18842134; PMC: PMC2584115\

\ \

\ Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\ \ Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes.\ Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\ PMID: 14500911; PMC: PMC208784\

\ \

\ Pei B, Sisu C, Frankish A, Howald C, Habegger L, Mu XJ, Harte R, Balasubramanian S, Tanzer A,\ Diekhans M et al.\ \ The GENCODE pseudogene resource.\ Genome Biol. 2012 Sep 26;13(9):R51.\ PMID: 22951037; PMC: PMC3491395\

\ \

\ Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W.\ \ Human-mouse alignments with BLASTZ.\ Genome Res. 2003 Jan;13(1):103-7.\ PMID: 12529312; PMC: PMC430961\

\ \

\ Zheng D, Frankish A, Baertsch R, Kapranov P, Reymond A, Choo SW, Lu Y, Denoeud F, Antonarakis SE,\ Snyder M et al.\ \ Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and\ evolution.\ Genome Res. 2007 Jun;17(6):839-51.\ PMID: 17568002; PMC: PMC1891343\

\ genes 1 baseColorDefault diffCodons\ baseColorUseCds table ucscRetroCds5\ baseColorUseSequence extFile ucscRetroSeq5 ucscRetroExtFile5\ color 20,0,250\ dataVersion Mar. 2013\ group genes\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Retroposed Genes V5, Including Pseudogenes\ shortLabel Retroposed Genes\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ track ucscRetroAli5\ type psl\ ucscRetroInfo ucscRetroInfo5\ visibility hide\ revel REVEL Scores bigWig REVEL Pathogenicity Score for single-base coding mutations (zoom for exact score) 0 100 150 80 200 202 167 227 0 0 0

Description

\ \

This track collection shows Rare Exome Variant Ensemble Learner (REVEL) scores for predicting\ the deleteriousness of each nucleotide change in the genome.\

\ \

\ REVEL is an ensemble method for predicting the pathogenicity of missense variants \ based on a combination of scores from 13 individual tools: MutPred, FATHMM v2.3, \ VEST 3.0, PolyPhen-2, SIFT, PROVEAN, MutationAssessor, MutationTaster, LRT, GERP++, \ SiPhy, phyloP, and phastCons. REVEL was trained using recently discovered pathogenic \ and rare neutral missense variants, excluding those previously used to train its \ constituent tools. The REVEL score for an individual missense variant can range \ from 0 to 1, with higher scores reflecting greater likelihood that the variant is \ disease-causing. \

\ \

Most authors of deleteriousness scores argue against using fixed cutoffs in\ diagnostics. But to give an idea of the meaning of the score value, the REVEL\ authors note: "For example, 75.4% of disease mutations but only 10.9% of\ neutral variants (and 12.4% of all ESVs) have a REVEL score above 0.5,\ corresponding to a sensitivity of 0.754 and specificity of 0.891. Selecting a\ more stringent REVEL score threshold of 0.75 would result in higher specificity\ but lower sensitivity, with 52.1% of disease mutations, 3.3% of neutral\ variants, and 4.1% of all ESVs being classified as pathogenic". (Figure S1 of\ the reference below)\

\ \

Display Conventions and Configuration

\

\ There are five subtracks for this track:\

    \
  • \

    Four lettered subtracks, one for every nucleotide, showing\ scores for mutation from the reference to that\ nucleotide. All subtracks show the REVEL ensemble score on mouseover. Across the exome, \ there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing\ the reference allele, e.g. A to A, is always set to zero, "0.0". REVEL only\ takes into account amino acid changes, so a nucleotide change that results in no\ amino acid change (synonymous) also receives the score "0.0". \

    \ In rare cases, two scores are output for the same variant at a \ genome position. This happens when there are two transcripts with\ different splicing patterns and since some input scores for REVEL take into account\ the sequence context, the same mutation can get two different scores. In these cases,\ only the maximum score is shown in the four per-nucleotide subtracks. The complete set of \ scores are shown in the Overlaps track.\

    \ \
  • \

    One subtrack, Overlaps, shows alternate REVEL scores when applicable. \ In rare cases (0.05% of genome positions), multiple scores exist with a single variant, \ due to multiple, overlapping transcripts. For example, if there are \ two transcripts and one covers only half of an exon, then the amino acids\ that overlap both transcripts will get two different REVEL scores, since some of the underlying \ scores (polyPhen for example) take into account the amino acid sequence context and \ this context is different depending on the transcript.\ For these cases, this subtrack contains at least two\ graphical features, for each affected genome position. Each feature is labeled\ with the mutation (A, C, T or G). The transcript IDs and resulting score is \ shown when hovering over the feature or clicking\ it. For the large majority of the genome, this subtrack has no features.\ This is because REVEL usually outputs only a single score per nucleotide and \ most transcript-derived amino acid sequence contexts are identical.\

    \

    \ Note that in most diagnostic assays, variants are called using WGS\ pipelines, not RNA-seq. As a result, variants are originally located on the\ genome, not on transcripts, and the choice of transcript is made by\ a variant calling software using a heuristic. In addition, clinically, in the\ field, some transcripts have been agreed-on as more relevant for a disease, e.g.\ because only certain transcripts may be expressed in the relevant tissue. So\ the choice of the most relevant transcript, and as such the REVEL score, may be\ a question of manual curation standards rather than a result of the variant itself.\

    \
\ \

\ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and no score will be shown on the mouseover tooltip.\

\ \

For hg38, note that the data was converted from the hg19 data using the UCSC\ liftOver program, by the REVEL authors. This can lead to missing values or\ duplicated values. When a hg38 position is annotated with two scores due to the\ lifting, the authors removed all the scores for this position. They did the same when\ the reference allele has changed from hg19 to hg38. Also, on hg38, the track has\ the "lifted" icon to indicate\ this. You can double-check if a nucleotide\ position is possibly affected by the lifting procedure by activating the track\ "Hg19 Mapping" under "Mapping and Sequencing".\

\ \

Data access

\

\ REVEL scores are available at the \ \ REVEL website. \ The site provides precomputed REVEL scores for all possible human missense variants \ to facilitate the identification of pathogenic variants among the large number of \ rare variants discovered in sequencing studies.\ \

\ \

\ The REVEL data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig\ files that can be downloaded from\ our download server.\ The files for this track are called a.bw, c.bw, g.bw, t.bw. Individual\ regions or the whole genome annotation can be obtained using our tool bigWigToWig\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to given range, e.g.\
 \
\ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg19/revel/a.bw stdout\
\ \

Methods

\ \

\ Data were converted from the files provided on\ the REVEL Downloads website. As with all other tracks,\ a full log of all commands used for the conversion is available in our \ source repository, for hg19 and hg38. The release used for each assembly is shown on the track description page.\ \

\ \

Credits

\

\ Thanks to the REVEL development team for providing precomputed data and fixing duplicated values in the hg38 files.\

\ \

References

\

\ Ioannidis NM, Rothstein JH, Pejaver V, Middha S, McDonnell SK, Baheti S, \ Musolf A, Li Q, Holzinger E, Karyadi D, et al.\ \ REVEL: An Ensemble Method for Predicting the Pathogenicity of Rare Missense Variants\ Am J Hum Genet. 2016 Oct 6;99(4):877-885.\ PMID: 27666373;\ PMC: PMC5065685\

\ \ phenDis 0 color 150,80,200\ compositeTrack on\ dataVersion /gbdb/$D/revel/version.txt\ group phenDis\ longLabel REVEL Pathogenicity Score for single-base coding mutations (zoom for exact score)\ shortLabel REVEL Scores\ track revel\ type bigWig\ visibility hide\ rgdQtl RGD Human QTL bed 4 . Human Quantitative Trait Locus from RGD 0 100 12 12 120 133 133 187 0 0 0 http://rgd.mcw.edu/objectSearch/qtlReport.jsp?rgd_id=

Description

\

\ A quantitative trait locus (QTL) is a polymorphic locus that contains alleles\ which differentially affect the expression of a continuously distributed \ phenotypic trait. Usually a QTL is a marker described by statistical \ association to quantitative variation in the particular phenotypic trait that\ is thought to be controlled by the cumulative action of alleles at multiple \ loci.

\ \

Credits

\

\ Thanks to the RGD for \ providing this annotation. RGD is funded by grant HL64541 entitled "Rat \ Genome Database", awarded to Dr. Howard J Jacob, Medical College of \ Wisconsin, from the National Heart Lung and Blood Institute \ (NHLBI) of the National \ Institutes of Health (NIH).\

\ \

References

\

\ Rapp JP.\ \ Genetic analysis of inherited hypertension in the rat.\ Physiol Rev. 2000 Jan;80(1):135-72.\ PMID: 10617767\

\ phenDis 1 color 12,12,120\ group phenDis\ longLabel Human Quantitative Trait Locus from RGD\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel RGD Human QTL\ track rgdQtl\ type bed 4 .\ url http://rgd.mcw.edu/objectSearch/qtlReport.jsp?rgd_id=\ visibility hide\ rgdRatQtl RGD Rat QTL bed 4 . Rat Quantitative Trait Locus from RGD Coarsely Mapped to Human 0 100 12 100 100 133 177 177 0 0 0 http://rgd.mcw.edu/objectSearch/qtlReport.jsp?rgd_id=

Description

\

\ This track shows Rat quantitative trait loci (QTLs) from the \ Rat Genome Database (RGD) \ that have been coarsely mapped by UCSC to the Human genome using \ stringently filtered cross-species alignments. \ A quantitative trait locus (QTL) is a polymorphic locus that contains alleles\ which differentially affect the expression of a continuously distributed \ phenotypic trait. Usually a QTL is a marker described by statistical \ association to quantitative variation in the particular phenotypic trait that\ is thought to be controlled by the cumulative action of alleles at multiple \ loci.

\

\ For a comprehensive review of QTL mapping techniques in the rat, see Rapp, 2000.

\

\ To map the Rat QTLs to Human, UCSC's chained and netted blastz\ alignments of Rat to Human were filtered to retain only those with\ high chain scores (>=500,000). This removed many valid-but-short\ alignments and in general retained only very long chains (>10,000,\ usually >100,000 bp), so that only large regions could be mapped. This\ choice was made because QTLs in general are extremely large and\ approximate regions. After the alignment filtering, UCSC's liftOver\ program was used to map Rat regions to Human via the filtered\ alignments.

\

\ To get a sense of how many genomic rearrangments between Rat and\ Human are in the region of a particular Rat QTL, you may want to\ view the Human Nets track in the Rat Nov. 2004 (Baylor 3.4/rn4) genome browser. \ In the position/search box, enter the name of the Rat QTL of interest.\

\ \

Credits

\

\ Thanks to the RGD for \ providing the Rat QTLs. RGD is funded by grant HL64541 entitled "Rat \ Genome Database", awarded to Dr. Howard J Jacob, Medical College of \ Wisconsin, from the National Heart Lung and Blood Institute \ (NHLBI) of the National \ Institutes of Health (NIH).\

\ \

References

\

\ Rapp JP.\ \ Genetic analysis of inherited hypertension in the rat.\ Physiol Rev. 2000 Jan;80(1):135-72.\ PMID: 10617767\

\ phenDis 1 color 12,100,100\ group phenDis\ longLabel Rat Quantitative Trait Locus from RGD Coarsely Mapped to Human\ origAssembly hg18\ otherDb rn4\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel RGD Rat QTL\ track rgdRatQtl\ type bed 4 .\ url http://rgd.mcw.edu/objectSearch/qtlReport.jsp?rgd_id=\ visibility hide\ wgEncodeRikenCage RIKEN CAGE Loc bed 3 RNA Subcellular CAGE Localization from ENCODE/RIKEN 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This track shows 5' cap analysis gene expression (CAGE) tags and clusters in \ RNA extracts \ from different \ \ sub-cellular localizations \ in multiple\ cell lines.\ A CAGE cluster is a region of overlapping tags with\ an assigned value that represents the expression level.\ The data in this track were produced as part of the ENCODE \ Transcriptome Project. \ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains multiple data types\ (views). For each view, there are multiple subtracks that\ display individually on the browser. Instructions for configuring multi-view\ tracks are \ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that \ you wish to hide.

\ \

This track contains the following views:\

\ \ \
TSS HMM
\
Transcriptional Start Sites based on Hidden Markov Modeling for pooled replicates where two replicates exist. \
    \
  • Expression levels are shown in reads per kilobase of exon per million reads mapped (RPKM).
    • \
  • The IDR value is the irreproducible discovery rate. This is a measurement that measures\ expression variances between genomic replicates in large scale experiments.
    • \
\
\
Plus and Minus Signals\
These views display signals representing the amount of overlapping CAGE reads (clusters) mapped on the forward and reverse genomic strands.\
\
Alignments
\
The Alignments view shows reads mapped to the genome and indicates where\ bases may mismatch. Every mapped read is displayed, i.e. uncollapsed. \ The alignment file follows the standard SAM format of Bowtie output. The custom tag XP can be\ ignored. See the\ Bowtie Manual\ for more information about the SAM Bowtie output (including other tags) and the\ SAM Format Specification\ for more information on the SAM/BAM file format.\ Where mapping quality is not available for this track, a score of 255 is used in accordance with\ the SAM Format Specification. Also, where the sequence quality scores are not available,\ all scores are displayed as 40.\
\
\

Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

\

Replicate numbering in the track display page is done by rank. The first replicate available may be replicate number three.

\ \

Color differences in subtracks may be set as a visual cue to\ distinguish between the different cell types or between annotations\ on the plus and minus strand.\

\ \

Downloadable Files

\
\
TSS GencV7
\
For some samples, there are download files in a modified gtf format with Transcriptional Start\ Sites based on GENCODE V7. A complete description of the TSS files is located in the\ supplemental materials directory.\
\
\ \

Methods

\

\ Cells were grown according to the approved \ \ ENCODE cell culture protocols.\ RNA molecules longer than 200 nt were isolated \ from each subcellular compartment and then\ were fractionated into polyA+ and polyA- fractions as described in \ these \ protocols.\ The CAGE tags were sequenced from the 5' ends of cap-trapped cDNAs produced\ using RIKEN CAGE technology \ (Kodzius et al. 2006; Valen et al. 2009). \ To create the tag, a linker was attached to the 5'\ end of polyA+ or polyA- reverse-transcribed cDNAs which were selected by cap\ trapping (Carninci et al. 1996). The first 27 bp of\ the cDNA were cleaved using class II restriction enzymes. A linker was then\ attached to the 3' end of the cDNA. \

\

\ After PCR amplification, the tags were sequenced using Illumina's Genome analyzer or HiSeq. The read lengths for each sample \ are specified in the metadata.\ Tags were mapped to the human genome (hg19) using the program Delve (T. Lassmann manuscript in preparation).\ Delve is a new probabilistic aligner focused on giving the best possible alignment of reads to a genome rather\ than focusing on speed. It calculates the mapping accuracy (probability of each alignment being true or not)\ for each alignment. There is no set limit on the number of errors allowed and therefore the mapping rate is\ commonly 100%. However, for analysis it is recommended to discard alignments with low mapping qualities.\

\

\ Exceptions to the above protocol are the polyA- RNA samples from K562 cytosol, K562 nucleus, and prostate whole cell\ which were sequenced using ABI SOLiD technology. These reads were mapped using Bowtie with its default parameters.\ Clusters were defined as regions of overlapping CAGE reads. The expression level was computed as the number\ of reads making up the cluster, divided by the total number of reads sequenced, times 1 million.\

\ \

Release Notes

\

\ This is Release 4 (July 2012) of Riken CAGE. Three missing Transcription Start Sites determined by Hidden Markov Models\ (TssHmm) tables have been added (H1-hesc Nucleus, H1-hesc Cytosol and NHEK Nucleus polyA+ samples).\

\

\ As with previous releases, the orignal data from the hg18 version of this track is still included and can be noted in the metadata as having a bioRepId that starts with gen0. This older data may be missing some information and does not have replicates. If there are new data available for an older sample, only the newer data is displayed. The older data is still availble for downloads.

\ \ \

Credits

\

\ These data were generated and analyzed by Timo Lassmann, Phil Kapranov, \ Hazuki Takahashi, Yoshihide Hayashizaki, Carrie Davis, Tom Gingeras, and Piero Carninci.\

\

Contact: \ Piero Carninci at \ RIKEN Omics Science Center\ \

\ \

References

\

\ Carninci P, Kvam C, Kitamura A, Ohsumi T, Okazaki Y, Itoh M, Kamiya M, \ Shibata K, Sasaki N, Izawa M, et al.\ \ High-efficiency full-length cDNA cloning by biotinylated CAP trapper.\ Genomics. 1996 November 1; 37(3):327-336.\

\

\ Kodzius R, Kojima M, Nishiyori H, Nakamura M, Fukuda S, Tagami M, Sasaki D,\ Imamura K, Kai C, Harbers M, et al. \ \ CAGE: cap analysis of gene expression.\ Nat Methods. 2006 March 1; 3(3):211-222.\

\ \

\ Valen E, Pascarella G, Chalk A, Maeda N, Kojima M, Kawazu C, Murata M, Nishiyori\ H, Lazarevic D, Motti D, et al.\ \ Genome-wide detection and analysis of hippocampus core promoters using\ DeepCAGE.\ Genome Res. 2009 February; 19(2):255-265.\

\ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior \ consent, submit publications that use an unpublished ENCODE dataset until \ nine months following the release of the dataset. This date is listed in \ the Restricted Until column, above. The full data release policy \ for ENCODE is available \ here.

\ \ expression 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell localization=localization rnaExtract=rnaExtract\ dimensionBchecked rank1,rankP\ dimensions dimensionY=cellType dimensionC=rnaExtract dimensionX=localization dimensionB=rank\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line localization=Localization rnaExtract=RNA
Extract view=View replicate=Replicate bioRep=Cross_Lab
BioReplicate labExpId=Lab
Exp_ID dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ filterComposite dimC=all dimB=multi\ group expression\ html wgEncodeRikenCage.release4\ longLabel RNA Subcellular CAGE Localization from ENCODE/RIKEN\ noInherit on\ shortLabel RIKEN CAGE Loc\ sortOrder cellType=+ localization=+ rnaExtract=+ view=- rank=+\ subGroup1 view Views TssHmm=TSS_HMM_Clusters MinusRawSignal=Minus_Signal PlusRawSignal=Plus_Signal Alignments=Alignments\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2A549=A549 (Tier_2) t2BCELLSCD20=B_cells_CD20+ (Tier_2) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2IMR90=IMR90 (Tier_2) t2MCF7=MCF-7 (Tier_2) t2MONOCYTESCD14=Monocytes_CD14+ (Tier_2) t2SKNSH=SK-N-SH (Tier_2) t3AG04450=AG04450 t3BJ=BJ t3CD34MOBILIZED=CD34+_Mobilized t3HAOAF=HAoAF t3HAOEC=HAoEC t3HCH=HCH t3HFDPC=HFDPC t3HMEPC=HMEpC t3HMSCAT=hMSC-AT t3HMSCBM=hMSC-BM t3HMSCUC=hMSC-UC t3HOB=HOB t3HPCPL=HPC-PL t3HPIEPC=HPIEpC t3HSAVEC=HSaVEC t3HVMF=HVMF t3HWP=HWP t3NHDF=NHDF t3NHEK=NHEK t3NHEMFM2=NHEM.f_M2 t3NHEMM2=NHEM_M2 t3PROSTATE=Prostate t3SKMC=SkMC t3SKNSHRA=SK-N-SH_RA\ subGroup3 localization Localization wcell=Whole_Cell cytosol=Cytosol nucleus=Nucleus polysome=Polysome nucleoplasm=Nucleoplasm chromatin=Chromatin nucleolus=Nucleolus\ subGroup4 rnaExtract RNA_Extract pAM=PolyA- pAP=PolyA+ total=Total_RNA\ subGroup5 rep Rep rep0=0 rep1=1 rep2=2 rep3=3 rep4=4 Pooled=Pooled\ subGroup6 rank Replicate rank1=1st rank2=2nd rankP=Pooled\ track wgEncodeRikenCage\ type bed 3\ ntSssSnps S SNPs bed 9 SNPS Used for Selective Sweep Scan (S) 0 100 0 0 0 127 127 127 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,

Description

\

\ This track shows single nucleotide polymorphisms (SNPs) used in a\ genome-wide scan for signals of positive selection in the human\ lineage since divergence from the Neandertal lineage.

\

\ SNP labels represent the ancestral (A) or derived (D) status,\ determined by comparison with the chimpanzee reference genome,\ of alleles in the human reference assembly, five modern human\ genomes of diverse ancestry (see the \ Modern Human Seq \ track), and Neandertals. \ The first six characters of an item name show the status of the allele\ (A, D or _ if not known)\ in six genomes: human reference, San, Yoruba, Han, Papuan, and French, in that\ order. These characters are followed by a colon, the number of derived alleles\ found in Neandertals, a comma and the number of ancestral alleles found in\ Neandertals. \ For example, a SNP labeled AAADAA:0D,2A has the ancestral allele in\ the reference human genome and in all of the modern human genomes\ except Han. Among Neandertals, two instances of the ancestral allele \ were found, but no instances of the derived allele. \

\

\ SNPs are colored red when at least four of the six modern human\ genomes are derived while all observed Neandertal alleles are\ ancestral. An overrepresentation of such SNPs in a region would \ imply that the region had undergone positive selection in the \ modern human lineage since divergence from Neandertals; the \ Sel Swp Scan \ (S) track displays a signal calculated from these SNPs, and the \ 5% Lowest S\ track contains the regions in which the signal most strongly indicates selective\ pressure on the modern human lineage.\

\ \

Display Conventions and Configuration

\

\ Red\ SNPs are those where at least four of the six modern human\ genomes are derived while all observed Neandertal alleles are\ ancestral. All other SNPs are black.\

\ \

Methods

\

\ For the purposes of this analysis, SNPs were defined as single-base\ sites that are polymorphic among 5 modern human genomes of diverse\ ancestry (see the \ Modern Human Seq \ track) plus the human reference\ genome. SNPs at CpG sites were excluded because of the higher\ mutation rate at CpG sites. \ Ancestral or derived state was determined by comparison with the \ chimpanzee genome. \

\ \

Credits

\

\ This track was produced at UCSC using data generated by\ Ed Green.\

\ \

Reference

\

\ Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH\ et al.\ \ A draft sequence of the Neandertal genome.\ Science. 2010 May 7;328(5979):710-22.\ PMID: 20448178\

\ neandertal 1 chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX\ exonArrows off\ group neandertal\ itemRgb on\ longLabel SNPS Used for Selective Sweep Scan (S)\ noScoreFilter .\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel S SNPs\ track ntSssSnps\ type bed 9\ visibility hide\ genomicSuperDups Segmental Dups bed 6 + Duplications of >1000 Bases of Non-RepeatMasked Sequence 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This track shows regions detected as putative genomic duplications within the\ golden path. The following display conventions are used to distinguish\ levels of similarity:\

    \
  • \ Light to dark gray: 90 - 98% similarity\
  • \ Light to dark yellow: 98 - 99% similarity\
  • \ Light to dark orange: greater than 99% similarity \
  • \ Red: duplications of greater than 98% similarity that lack sufficient \ Segmental Duplication Database evidence (most likely missed overlaps) \
\ For a region to be included in the track, at least 1 Kb of the total \ sequence (containing at least 500 bp of non-RepeatMasked sequence) had to \ align and a sequence identity of at least 90% was required.

\ \

Methods

\

\ Segmental duplications play an important role in both genomic disease \ and gene evolution. This track displays an analysis of the global \ organization of these long-range segments of identity in genomic sequence.\

\ \

Large recent duplications (>= 1 kb and >= 90% identity) were detected\ by identifying high-copy repeats, removing these repeats from the genomic \ sequence ("fuguization") and searching all sequence for similarity. The \ repeats were then reinserted into the pairwise alignments, the ends of \ alignments trimmed, and global alignments were generated.\ For a full description of the "fuguization" detection method, see Bailey \ et al., 2001. This method has become \ known as WGAC (whole-genome assembly comparison); for example, see Bailey \ et al., 2002.\ \

Credits

\

\ The data were provided by Saba Sajjadian, Arthur Ko and\ Evan Eichler at the\ University of Washington.\ \

References

\

\ Bailey JA, Gu Z, Clark RA, Reinert K, Samonte RV, Schwartz S, Adams MD,\ Myers EW, Li PW, Eichler EE.\ Recent segmental duplications in the human genome.\ Science. 2002 Aug 9;297(5583):1003-7.\ PMID: 12169732\

\ \

\ Bailey JA, Yavor AM, Massa HF, Trask BJ, Eichler EE.\ Segmental duplications: organization and impact within the \ current human genome project assembly.\ Genome Res. 2001 Jun;11(6):1005-17.\ PMID: 11381028; PMC: PMC311093\

\ rep 1 group rep\ longLabel Duplications of >1000 Bases of Non-RepeatMasked Sequence\ noScoreFilter .\ shortLabel Segmental Dups\ track genomicSuperDups\ type bed 6 +\ visibility hide\ ntSssZScorePMVar Sel Swp Scan (S) bigWig -8.8332 33.63719 Selective Sweep Scan (S) on Neandertal vs. Human Polymorphisms (Z-Score +- Variance) 0 100 0 0 0 127 127 127 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,

Description

\

\ This track shows the S score (Z-score +- variance) for positive selection in humans within a 100 kb\ window surrounding each polymorphic position in the five modern human\ sequences and the human reference genome as described in Green et al.,\ Supplemental Online Material Text 13, Burbano et al.. \ A positive score indicates more derived alleles in Neandertal than\ expected, given the frequency of derived alleles in human. A negative\ score indicates fewer derived alleles in Neandertal, and may indicate an \ episode of positive selection in early humans.\

\

\ To view the polymorphic sites on which the S score was computed, open\ the S\ SNPs track.

\ \

Methods

\

\ Green et al. identified single-base sites that are\ polymorphic among five modern human genomes of diverse ancestry\ (in the \ Modern Human Seq \ track) plus the human reference\ genome. CpG sites were excluded because of the higher mutation rate\ at CpG sites.\ The ancestral or derived state of each single nucleotide polymorphism\ (SNP) was determined by comparison with the chimpanzee genome.\ The SNPs are displayed in the \ S SNPs track.\ The fact that SNPs with higher frequencies of the derived\ allele in modern humans were more likely to show the derived allele in\ Neandertals was used to calculate the expected number of derived alleles in\ Neandertal within a given region of the human genome.\ The observed numbers of derived alleles were compared to the expected\ numbers to identify regions where the Neandertals carry fewer\ derived alleles than expected given the human allelic states. The\ score assigned to each SNP is\ the z-score of the observed and expected counts relative\ to the variance in the number of the expected counts of derived\ alleles within the 100,000-base window around the SNP.\

\

\ Note: In order to display both the score and the variance within\ the same track in the UCSC Genome Browser, the scores were modified as\ follows: at the SNP position, the value displayed is the score plus\ the variance. At the position following the SNP position, the score\ minus the variance is displayed. When viewing large regions (at least\ 100,000 bases), the default mean+whiskers condensation of the scores\ provides an indication of the range covered by the variance.\

\ \

Reference

\

\ Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH\ et al.\ \ A draft sequence of the Neandertal genome.\ Science. 2010 May 7;328(5979):710-22.\ PMID: 20448178\

\ neandertal 0 autoScale off\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX\ group neandertal\ longLabel Selective Sweep Scan (S) on Neandertal vs. Human Polymorphisms (Z-Score +- Variance)\ maxHeightPixels 128:32:11\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel Sel Swp Scan (S)\ track ntSssZScorePMVar\ type bigWig -8.8332 33.63719\ viewLimits -5:1\ visibility hide\ windowingFunction mean\ yLineMark -2\ yLineOnOff on\ chainSelf Self Chain chain hg19 Human Chained Self Alignments 0 100 100 50 0 255 240 200 1 0 0

Description

\

\ This track shows alignments of the human genome with itself, using\ a gap scoring system that allows longer gaps than traditional\ affine gap scoring systems. The system can also tolerate gaps\ in both sets of sequence simultaneously. After filtering out the \ "trivial" alignments produced when identical locations of the \ genome map to one another (e.g. chrN mapping to chrN), \ the remaining alignments point out areas of duplication within the \ human genome. The pseudoautosomal regions of chrX and chrY are an \ exception: in this assembly, these regions have been copied from chrX into \ chrY, resulting in a large amount of self chains aligning in these positions \ on both chromosomes.

\

\ The chain track displays boxes joined together by either single or\ double lines. The boxes represent aligning regions. Single lines indicate \ gaps that are largely due to a deletion in the query assembly or an \ insertion in the target assembly. Double lines represent more complex gaps \ that involve substantial sequence in both the query and target assemblies. \ This may result from inversions, overlapping deletions, an abundance of local \ mutation, or an unsequenced gap in one of the assemblies. In cases where \ multiple chains align over a particular region of the human genome, the \ chains with single-lined gaps are often due to processed pseudogenes, while \ chains with double-lined gaps are more often due to paralogs and unprocessed \ pseudogenes.

\

\ In the "pack" and "full" display\ modes, the individual feature names indicate the chromosome, strand, and\ location (in thousands) of the match for each matching alignment.

\ \ \

Display Conventions and Configuration

\

By default, the chains to chromosome-based assemblies are colored\ based on which chromosome they map to in the aligning organism. To turn\ off the coloring, check the "off" button next to: Color\ track based on chromosome.

\

\ To display only the chains of one chromosome in the aligning\ organism, enter the name of that chromosome (e.g. chr4) in box next to: \ Filter by chromosome.

\ \

Methods

\

\ The genome was aligned to itself using blastz. Trivial alignments were \ filtered out, and the remaining alignments were converted into axt format\ using the lavToAxt program. The axt alignments were fed into axtChain, which \ organizes all alignments between a single target chromosome and a single\ query chromosome into a group and creates a kd-tree out of the gapless \ subsections (blocks) of the alignments. A dynamic program was then run over \ the kd-trees to find the maximally scoring chains of these blocks.\ \ The following matrix was used:

\

\ \ \ \ \ \
 ACGT
A90-330-236-356
C-330100-318-236
G-236-318100-330
T-356-236-33090

\ \ \ Chains scoring below a minimum score of 2,000 were discarded;\ the remaining chains are displayed in this track.

\ \

Credits

\

\ Blastz was developed at Pennsylvania State University by\ Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from\ Ross Hardison.

\

\ Lineage-specific repeats were identified by Arian Smit and his\ RepeatMasker\ program.

\

\ The axtChain program was developed at the University of California\ at Santa Cruz by Jim Kent with advice from Webb Miller and David Haussler.\

\

\ The browser display and database storage of the chains were generated\ by Robert Baertsch and Jim Kent.

\ \

References

\

\ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput 2002, 115-26 (2002).

\

\ Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\ \ Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes.\ Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\

\

\ Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W.\ \ Human-mouse alignments with BLASTZ.\ Genome Res. 2003 Jan;13(1):103-7.\

\ rep 1 altColor 255,240,200\ chainColor Normalized Score\ chainNormScoreAvailable yes\ color 100,50,0\ group rep\ longLabel Human Chained Self Alignments\ matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90\ matrixHeader A, C, G, T\ otherDb hg19\ shortLabel Self Chain\ spectrum on\ track chainSelf\ type chain hg19\ visibility hide\ sestanBrainAtlas Sestan Brain expRatio Sestan Lab Human Brain Atlas Microarrays 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This track displays exon microarray expression data from the late mid-fetal\ human brain, generated by the Sestan Lab at Yale University. The data represent\ 13 brain regions, including nine areas of neocortex, and both hemispheres. By\ default, arrays are grouped by the median for each brain region, including each\ neocortical area. Alternatively, neocortex areas can be grouped together;\ arrays can be grouped by mean; or all 95 arrays can be shown individually. \

\

Methods

\

\ RNA was isolated from 13 brain regions, from both hemispheres, of four late\ mid-fetal human brains, with a total PMI of less than one hour, and hybridized\ to Affymetrix Human Exon 1.0 ST arrays. Affymetrix CEL files were imported into\ Partek GS using Robust Multichip Average (RMA) background correction, quantile\ normalization, and GC content correction. The normalized data were then\ converted to log-ratios, relative to arrays hybridized with RNA pooled from all\ regions of the same brain. Signal log-ratios are displayed here as green for\ negative (underexpression) and red for positive (overexpression). \

\ The probe set for this microarray track can be displayed by turning on the\ Affy HuEx 1.0 track. Core, extended, and full probe sets are shown.\ "Bounded" probe sets - exons that lie within the intron of more than\ one gene - and potentially cross-hybridizing probe sets were filtered from this\ dataset, leaving ~875K probe sets.\

\

Credits

\

\ The data for this track were generated and analyzed by Matthew B. Johnson,\ Yuka Imamura Kawasawa, Christopher Mason, and the \ Yale Neuroscience Microarray Center.\

\

Links

\

\ The raw microarray data are available via the\ NCBI Gene Expression\ Omnibus.\

\ More information is available at\ https://hbatlas.org/.\

\ expression 1 expScale 3.0\ expStep 0.5\ expTable sestanBrainAtlasExps\ group expression\ groupings sestanBrainAtlasGroups\ longLabel Sestan Lab Human Brain Atlas Microarrays\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel Sestan Brain\ track sestanBrainAtlas\ type expRatio\ visibility hide\ avgView Sex Avg bed 3 deCODE Recombination maps, 10Kb bin size, October 2010 2 100 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr16,chr14,chr15,chr17,chr18,chr19,chr20,chr22,chr21, map 1 longLabel deCODE Recombination maps, 10Kb bin size, October 2010\ parent decodeRmap\ shortLabel Sex Avg\ track avgView\ view avg\ visibility full\ wgEncodeUwHistoneViewRawSig Sg Signal bed 3 Histone Modifications by ChIP-seq from ENCODE/University of Washington 2 100 0 0 0 127 127 127 0 0 0 regulation 1 autoScale off\ longLabel Histone Modifications by ChIP-seq from ENCODE/University of Washington\ maxHeightPixels 100:32:16\ maxLimit 16000.0\ minLimit -1\ parent wgEncodeUwHistone\ shortLabel Sg Signal\ track wgEncodeUwHistoneViewRawSig\ view zRSig\ viewLimits 1:100\ visibility full\ windowingFunction mean+whiskers\ sgpGene SGP Genes genePred sgpPep SGP Gene Predictions Using Mouse/Human Homology 0 100 0 90 100 127 172 177 0 0 0

Description

\ \ This track shows gene predictions from the\ SGP2\ homology-based gene prediction program developed by Roderic Guigó's\ "Computational Biology of RNA Processing"\ group, which is part of the Centre de Regulació Genòmica\ (CRG) in Barcelona, Catalunya, Spain. To predict\ genes in a genomic query, SGP2 combines geneid predictions with tblastx\ comparisons of the genome of the target species against genomic sequences\ of other species (reference genomes) deemed to be at an appropriate\ evolutionary distance from the target.\ \

Credits

\ \ Thanks to the\ "Computational Biology of RNA Processing"\ group for providing these data.\ genes 1 color 0,90,100\ group genes\ html ../../sgpGene\ longLabel SGP Gene Predictions Using Mouse/Human Homology\ parent genePredArchive\ shortLabel SGP Genes\ track sgpGene\ type genePred sgpPep\ visibility hide\ sibGene SIB Genes genePred Swiss Institute of Bioinformatics Gene Predictions from mRNA and ESTs 0 100 195 90 0 225 172 127 0 0 0 http://ccg.vital-it.ch/cgi-bin/tromer/tromer_quick_search_internal.pl?db=hg19&query_str=$$

Description

\

\ The SIB Genes track is a transcript-based set of gene predictions based\ on data from RefSeq and EMBL/GenBank. Genes all have the support of at\ least one GenBank full length RNA sequence, one RefSeq RNA, or one spliced\ EST. The track includes both protein-coding and non-coding transcripts.\ The coding regions are predicted using\ ESTScan.

\ \

Display Conventions and Configuration

\

\ This track in general follows the display conventions for\ gene prediction\ tracks. The exons for putative non-coding genes and untranslated regions \ are represented by relatively thin blocks while those for coding open \ reading frames are thicker.

\

\ This track contains an optional codon coloring\ feature that allows users to quickly validate and compare gene predictions.\ To display codon colors, select the genomic codons option from the\ Color track by codons pull-down menu. Go to the\ Coloring Gene Predictions and\ Annotations by Codon page for more information about this feature.

\

Further information on the predicted transcripts can be found on the\ Transcriptome Web\ interface.

\ \ \

Methods

\

\ The SIB Genes are built using a multi-step pipeline: \

    \
  1. RefSeq and GenBank RNAs and ESTs are aligned to the genome with\ SIBsim4, keeping \ only the best alignments for each RNA.\
  2. Alignments are broken up at non-intronic gaps, with small isolated \ fragments thrown out.\
  3. A splicing graph is created for each set of overlapping alignments. This\ graph has an edge for each exon or intron, and a vertex for each splice site,\ start, and end. Each RNA that contributes to an edge is kept as evidence for\ that edge.\
  4. The graph is traversed to generate all unique transcripts. The traversal is \ guided by the initial RNAs to avoid a combinatorial explosion in alternative \ splicing.\
  5. Protein predictions are generated.\
\ \

Credits

\

\ The SIB Genes track was produced on the Vital-IT high-performance \ computing platform\ using a computational pipeline developed by Christian Iseli with help from\ colleagues at the Ludwig Institute\ for Cancer\ Research and the Swiss Institute \ of Bioinformatics. It is based on data from NCBI RefSeq and GenBank/EMBL. Our\ thanks to the people running these databases and to the scientists worldwide\ who have made contributions to them.

\ \

References

\

\ Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\ GenBank: update.\ Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6.\ PMID: 14681350; PMC: PMC308779\

\ genes 1 color 195,90,0\ group genes\ html ../../sibGene\ longLabel Swiss Institute of Bioinformatics Gene Predictions from mRNA and ESTs\ parent genePredArchive\ shortLabel SIB Genes\ track sibGene\ type genePred\ url http://ccg.vital-it.ch/cgi-bin/tromer/tromer_quick_search_internal.pl?db=hg19&query_str=$$\ urlLabel SIB link:\ visibility hide\ wgEncodeGisChiaPetSignal Signal bed 12 Chromatin Interaction Analysis Paired-End Tags (ChIA-PET) from ENCODE/GIS-Ruan 2 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Chromatin Interaction Analysis Paired-End Tags (ChIA-PET) from ENCODE/GIS-Ruan\ maxHeightPixels 100:24:16\ maxLimit 25183\ minLimit .005\ parent wgEncodeGisChiaPet\ shortLabel Signal\ track wgEncodeGisChiaPetSignal\ transformFunc NONE\ view Signal\ viewLimits 0:30\ visibility full\ windowingFunction mean+whiskers\ wgEncodeSydhNsomeViewSignal Signal bed 3 Nucleosome Position by MNase-seq from ENCODE/Stanford/BYU 2 100 0 0 0 127 127 127 0 0 0 regulation 1 autoScale off\ longLabel Nucleosome Position by MNase-seq from ENCODE/Stanford/BYU\ maxHeightPixels 100:32:16\ parent wgEncodeSydhNsome\ shortLabel Signal\ track wgEncodeSydhNsomeViewSignal\ view Signal\ viewLimits 0:8\ visibility full\ windowingFunction mean+whiskers\ wgEncodeHaibRnaSeqViewSignal Signal bigWig RNA-seq from ENCODE/HAIB 2 100 0 0 0 127 127 127 0 0 0 expression 0 autoScale off\ longLabel RNA-seq from ENCODE/HAIB\ maxHeightPixels 100:24:16\ parent wgEncodeHaibRnaSeq\ shortLabel Signal\ track wgEncodeHaibRnaSeqViewSignal\ transformFunc NONE\ type bigWig\ view RawSignal\ viewLimits 0:5\ visibility full\ windowingFunction mean+whiskers\ wgEncodeSydhTfbsViewSignal Signal bed 3 Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard 2 100 0 0 0 127 127 127 0 0 0 regulation 1 autoScale off\ longLabel Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard\ maxHeightPixels 100:32:16\ maxLimit 12768\ minLimit -1\ parent wgEncodeSydhTfbs\ shortLabel Signal\ track wgEncodeSydhTfbsViewSignal\ view Signal\ viewLimits 3:40\ visibility full\ windowingFunction mean+whiskers\ wgEncodeUchicagoTfbsViewSignal Signal bed 3 Transcription Factor Binding Sites by Epitope-Tag from ENCODE/UChicago 2 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor Binding Sites by Epitope-Tag from ENCODE/UChicago\ maxHeightPixels 100:32:16\ maxLimit 12768\ minLimit 0\ parent wgEncodeUchicagoTfbs\ shortLabel Signal\ track wgEncodeUchicagoTfbsViewSignal\ view Signal\ viewLimits 0:15\ visibility full\ windowingFunction mean+whiskers\ wgEncodeBuOrchidSignalView Signal bigWig -1 2 ORChID Predicted DNA Cleavage Sites from ENCODE/Boston Univ (Tullius lab) 2 100 0 0 0 127 127 127 0 0 0 map 0 autoScale on\ longLabel ORChID Predicted DNA Cleavage Sites from ENCODE/Boston Univ (Tullius lab)\ maxHeightPixels 100:50:16\ parent wgEncodeBuOrchid\ shortLabel Signal\ smoothingWindow 7\ track wgEncodeBuOrchidSignalView\ transformFunc NONE\ type bigWig -1 2\ view Signal\ viewLimits 0:0.4\ visibility full\ windowingFunction mean+whiskers\ wgEncodeUwDgfViewSignal Signal bed 3 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington 2 100 0 0 0 127 127 127 0 0 0 regulation 1 autoScale off\ longLabel DNaseI Digital Genomic Footprinting from ENCODE/University of Washington\ maxHeightPixels 100:32:16\ maxLimit 70530\ minLimit 1\ parent wgEncodeUwDgf\ shortLabel Signal\ track wgEncodeUwDgfViewSignal\ view Signal\ viewLimits 2:20\ visibility full\ windowingFunction mean+whiskers\ wgEncodeSunyRipSeqViewSignal Signal bigWig RIP-seq from ENCODE/SUNY Albany 2 100 0 0 0 127 127 127 0 0 0 regulation 0 autoScale off\ longLabel RIP-seq from ENCODE/SUNY Albany\ maxHeightPixels 100:24:16\ parent wgEncodeSunyRipSeq\ shortLabel Signal\ track wgEncodeSunyRipSeqViewSignal\ transformFunc NONE\ type bigWig\ view Signal\ viewLimits 0:500\ visibility full\ windowingFunction mean+whiskers\ wgEncodeSydhRnaSeqViewSignal Signal bed 3 RNA-seq from ENCODE/Stanford/Yale/USC/Harvard 2 100 0 0 0 127 127 127 0 0 0 expression 1 autoScale off\ longLabel RNA-seq from ENCODE/Stanford/Yale/USC/Harvard\ maxHeightPixels 100:24:16\ parent wgEncodeSydhRnaSeq\ shortLabel Signal\ track wgEncodeSydhRnaSeqViewSignal\ transformFunc NONE\ view RawSignal\ viewLimits 0:78\ visibility full\ windowingFunction mean+whiskers\ wgEncodeCaltechRnaSeqViewSignal Signal bed 3 RNA-seq from ENCODE/Caltech 2 100 0 0 0 127 127 127 0 0 0 expression 1 autoScale off\ longLabel RNA-seq from ENCODE/Caltech\ maxHeightPixels 100:24:16\ minLimit 0\ parent wgEncodeCaltechRnaSeq\ shortLabel Signal\ track wgEncodeCaltechRnaSeqViewSignal\ view Signal\ viewLimits 1:10\ visibility full\ windowingFunction mean+whiskers\ wgEncodeUncBsuProtViewSignal Signal bed 3 Proteogenomics Hg19 Mapping from ENCODE/Univ. North Carolina/Boise State Univ. 2 100 0 0 0 127 127 127 1 0 0 expression 1 longLabel Proteogenomics Hg19 Mapping from ENCODE/Univ. North Carolina/Boise State Univ.\ parent wgEncodeUncBsuProt\ scoreFilter 200\ scoreFilterLimits 200:1000\ shortLabel Signal\ track wgEncodeUncBsuProtViewSignal\ useScore 1\ view Signal\ visibility full\ wgEncodeBroadHistoneViewSignal Signal bed 3 Histone Modifications by ChIP-seq from ENCODE/Broad Institute 2 100 0 0 0 127 127 127 1 0 0 regulation 1 autoScale off\ longLabel Histone Modifications by ChIP-seq from ENCODE/Broad Institute\ maxHeightPixels 100:32:16\ maxLimit 473622.75\ minLimit -1\ parent wgEncodeBroadHistone\ shortLabel Signal\ spanList first\ track wgEncodeBroadHistoneViewSignal\ view Signal\ viewLimits 1:50\ visibility full\ windowingFunction mean+whiskers\ wgEncodeSydhHistoneViewSignal Signal bed 3 Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard 2 100 0 0 0 127 127 127 0 0 0 regulation 1 autoScale off\ longLabel Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard\ maxHeightPixels 100:32:16\ maxLimit 13293\ minLimit -1\ parent wgEncodeSydhHistone\ shortLabel Signal\ track wgEncodeSydhHistoneViewSignal\ view Signal\ viewLimits 3:20\ visibility full\ windowingFunction mean+whiskers\ simpleRepeat Simple Repeats bed 4 + Simple Tandem Repeats by TRF 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This track displays simple tandem repeats (possibly imperfect repeats) located\ by Tandem Repeats\ Finder (TRF) which is specialized for this purpose. These repeats can\ occur within coding regions of genes and may be quite\ polymorphic. Repeat expansions are sometimes associated with specific\ diseases.

\ \

Methods

\

\ For more information about the TRF program, see Benson (1999).\

\ \

Credits

\

\ TRF was written by \ Gary Benson.

\ \

References

\ \

\ Benson G.\ \ Tandem repeats finder: a program to analyze DNA sequences.\ Nucleic Acids Res. 1999 Jan 15;27(2):573-80.\ PMID: 9862982; PMC: PMC148217\

\ rep 1 group rep\ longLabel Simple Tandem Repeats by TRF\ shortLabel Simple Repeats\ track simpleRepeat\ type bed 4 +\ visibility hide\ pgSnp1off Single Genomes pgSnp Personal Genome Variants 0 100 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Personal Genome Variants\ parent pgSnp\ shortLabel Single Genomes\ track pgSnp1off\ view N_1off\ visibility hide\ gnomADPextSkin_NotSunExposed_Suprapubic_ Skin-Not Sun Exposed (Suprapubic) bigWig 0 1 gnomAD pext Skin-Not Sun Exposed (Suprapubic) 0 100 0 0 255 127 127 255 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Skin_NotSunExposed_Suprapubic_.bw\ color 0,0,255\ longLabel gnomAD pext Skin-Not Sun Exposed (Suprapubic)\ parent gnomadPext off\ shortLabel Skin-Not Sun Exposed (Suprapubic)\ track gnomADPextSkin_NotSunExposed_Suprapubic_\ visibility hide\ gnomADPextSkin_SunExposed_Lowerleg_ Skin-Sun Exposed (Lowerleg) bigWig 0 1 gnomAD pext Skin-Sun Exposed (Lowerleg) 0 100 119 119 255 187 187 255 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Skin_SunExposed_Lowerleg_.bw\ color 119,119,255\ longLabel gnomAD pext Skin-Sun Exposed (Lowerleg)\ parent gnomadPext off\ shortLabel Skin-Sun Exposed (Lowerleg)\ track gnomADPextSkin_SunExposed_Lowerleg_\ visibility hide\ gnomADPextSmallIntestine_TerminalIleum Small Intestine-Terminal Ileum bigWig 0 1 gnomAD pext Small Intestine-Terminal Ileum 0 100 85 85 34 170 170 144 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/SmallIntestine_TerminalIleum.bw\ color 85,85,34\ longLabel gnomAD pext Small Intestine-Terminal Ileum\ parent gnomadPext off\ shortLabel Small Intestine-Terminal Ileum\ track gnomADPextSmallIntestine_TerminalIleum\ visibility hide\ wgRna sno/miRNA bed 8 + C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase 0 100 200 80 0 227 167 127 0 0 0 http://www-snorna.biotoul.fr/plus.php?id=$$

Description

\

\ This track displays positions of four different types of RNA in the human \ genome: \

    \
  • precursor forms of microRNAs (pre-miRNAs) \
  • C/D box small nucleolar RNAs (C/D box snoRNAs)\
  • H/ACA box snoRNAs\
  • small Cajal body-specific RNAs (scaRNAs) \

\

\ C/D box and H/ACA box snoRNAs are guides for the 2'O-ribose methylation and \ the pseudouridilation, respectively, of rRNAs and snRNAs, although many of \ them have no documented target RNA. The scaRNAs guide modifications of the\ spliceosomal snRNAs transcribed by RNA polymerase II, and often contain both \ C/D and H/ACA domains.

\

\ The pre-miRNA data are from the\ \ miRBase Sequence Database at the Wellcome Trust Sanger Institute. The snoRNA and scaRNA data \ are from \ snoRNABase, which is \ maintained at the Laboratoire de Biologie Moléculaire Eucaryote.\

\ \

Display Conventions and Configuration

\

\ This track follows the general display conventions for \ gene prediction \ tracks. At a zoomed-in resolution, arrows superimposed on the blocks \ indicate the sense orientation of the RNAs. The RNA types are represented by \ blocks of the following colors:\

    \
  • red = pre-miRNA
    • \
  • blue = C/D box snoRNA
    • \
  • green = H/ACA box snoRNA
    • \
  • magenta = scaRNA
\

\

Methods

\

Pre-miRNA genomic locations from miRBase were calculated using wublastn for sequence \ alignment with the requirement of 100% identity. The extents of the precursor \ sequences were not generally known and were predicted based on base-paired \ hairpin structure.

\

\ The snoRNAs and scaRNAs genomic locations from snoRNABase were aligned to the hg18 human genome assembly \ using BLAT and were then lifted to the hg19 assembly.\ In a few cases, no exact match was found for the published sequences; these \ likely correspond to sequencing errors. In these cases, the best BLAT hit (which \ differed from the published sno/scaRNA sequence by 1-3 nucleotides) was adopted.\

\ \

Credits

\

\ The genome coordinates for the pre-miRNAs were obtained from the\ miRBase Sequence Database FTP site, and the genome \ coordinates for the snoRNA and scaRNA were obtained from the\ snoRNABase coordinates download page.

\ \

References

\

\ When making use of these data, please cite the following articles and, if \ applicable, the primary sources of the RNA sequences:

\

\ Griffiths-Jones S.\ \ The microRNA Registry.\ Nucleic Acids Res. 2004 Jan 1;32(Database issue):D109-11.\ PMID: 14681370; PMC: PMC308757\

\ \

\ Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ.\ \ miRBase: microRNA sequences, targets and gene nomenclature.\ Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4.\ PMID: 16381832; PMC: PMC1347474\

\ \

\ Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ.\ \ miRBase: tools for microRNA genomics.\ Nucleic Acids Res. 2008 Jan;36(Database issue):D154-8.\ PMID: 17991681; PMC: PMC2238936\

\ \

\ Lestrade L, Weber MJ.\ \ snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs.\ Nucleic Acids Res. 2006 Jan 1;34(Database issue):D158-62.\ PMID: 16381836; PMC: PMC1347365\

\ \

\ Weber MJ.\ \ New human and mouse microRNA genes found by homology search.\ FEBS J. 2005 Jan;272(1):59-73.\ PMID: 15634332\

\ \

\ For more information on BLAT, see\ Kent WJ.\ \ BLAT--the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

\ \

\ The following publication provides guidelines on miRNA annotation:\

\ Ambros V, Bartel B, Bartel DP, Burge CB, Carrington JC, Chen X, Dreyfuss G, Eddy SR, Griffiths-Jones\ S, Marshall M et al.\ \ A uniform system for microRNA annotation.\ RNA. 2003 Mar;9(3):277-9.\ PMID: 12592000; PMC: PMC1370393\

\ genes 1 color 200,80,0\ dataVersion miRBase Version 20 (Oct. 2013) and snoRNABase Version 3\ group genes\ longLabel C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase\ noScoreFilter .\ shortLabel sno/miRNA\ track wgRna\ type bed 8 +\ url http://www-snorna.biotoul.fr/plus.php?id=$$\ url2 http://www.mirbase.org/cgi-bin/query.pl?terms=$$\ url2Label miRBase:\ urlLabel Laboratoire de Biologie Moleculaire Eucaryote:\ visibility hide\ snpedia SNPedia bed 4 SNPedia 0 100 50 0 100 152 127 177 0 0 0

Description

\ \

\ SNPedia is a wiki investigating human\ genetics with information about the effects of variations in DNA, citing\ peer-reviewed scientific publications.\ \

SNPedia all: SNPedia all SNPs (including empty pages)

\

\ The track "SNPedia all" shows all SNPs that exist as a page in \ SNPedia.com. As SNPedia's user collaboration grows, more \ detail will be added to SNPedia.com pages. For now, most of the pages are auto-generated by bots \ and have empty pages. According to Mike Carioso (SNPedia.com founder), SNPedia entries are mostly \ ClinVar entries marked as pathogenic with at least 4 stars as defined by the\ \ ClinVar review status. \

\ \

SNPedia with text: SNPedia pages with manually typed text

\

\ The track "SNPedia with text" is a subset of the "SNPedia all" track. This track \ displays only SNPedia entries with a text page that was created manually by a user who typed in \ some text (approximately 5,000 entries). In the browser, click on the "configure" button\ and select "next/previous item navigation" to show clickable arrows in the browser which\ will jump to the next or previous item.\

\

\ Clicks on the features show the text from the SNPedia.com page and a link to the original page.\

\ \

Display Conventions and Configuration

\ \

\ Genomic locations of SNPedia entries are labeled with the dbSNP ID.\

\ \

\ In the track "SNPedia all SNPs", the features are colored based on the SNPedia microarray \ annotation: grey for SNPs that are on no microarray, dark blue for Affymetrix, dark purple for \ Illumina and black for features on both arrays.\

\ \

Methods

\ \

\ The mappings displayed in this track were used as provided in the SNPedia GFF file.\ For the "SNPedia with text" track, all SNPedia pages were downloaded and their content \ checked with a script that tries to remove pages that were auto-generated and not created manually \ by a user.\

\ \

Credits

\ \

\ Thanks to Mike Cariaso for help with the GFF download and Max Haeussler at UCSC for building this \ track.\

\ \

References

\ \

Cariaso Michael; Lennon Greg. \ \ SNPedia: a wiki supporting personal genome annotation, interpretation and analysis. \ Nucleic acids research. 2012 40Database issue:D1308-12.\ PMID: 22140107; \ PMC: \ PMC3245045

\ \ phenDis 1 color 50,0,100\ compositeTrack on\ group phenDis\ longLabel SNPedia\ shortLabel SNPedia\ track snpedia\ type bed 4\ visibility hide\ gnomADPextSpleen Spleen bigWig 0 1 gnomAD pext Spleen 0 100 119 136 85 187 195 170 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Spleen.bw\ color 119,136,85\ longLabel gnomAD pext Spleen\ parent gnomadPext off\ shortLabel Spleen\ track gnomADPextSpleen\ visibility hide\ wgEncodeCaltechRnaSeqViewSplices Splice Juctions bam RNA-seq from ENCODE/Caltech 0 100 0 0 0 127 127 127 0 0 0 expression 1 bamColorMode off\ bamGrayMode aliQual\ baseColorDefault diffBases\ baseColorUseSequence lfExtra\ indelDoubleInsert on\ indelQueryInsert on\ longLabel RNA-seq from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeq\ shortLabel Splice Juctions\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 100\ showNames on\ track wgEncodeCaltechRnaSeqViewSplices\ type bam\ view Splices\ visibility hide\ wgEncodeCshlLongRnaSeqViewJunctions Splice Junctions bed 3 Long RNA-seq from ENCODE/Cold Spring Harbor Lab 0 100 0 0 0 127 127 127 0 0 0 expression 1 longLabel Long RNA-seq from ENCODE/Cold Spring Harbor Lab\ parent wgEncodeCshlLongRnaSeq\ scoreFilterLimits 0:1000\ shortLabel Splice Junctions\ track wgEncodeCshlLongRnaSeqViewJunctions\ view Junctions\ visibility hide\ wgEncodeSydhNsome Stanf Nucleosome bed 3 Nucleosome Position by MNase-seq from ENCODE/Stanford/BYU 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

Nucleosomes are part of the first level of chromatin packaging. They each consist of a histone heterooctamer around which DNA wraps 1.6 times. The histone heterooctomamer is made up of two copies of histones 2A, 2B, 3 and 5. The segment of DNA wrapped around the histones, the so-called "core" fragment, is 147 base pairs long. Neighboring nucleosomes are separated from one another by a stretch of DNA called the "linker," whose size varies depending on organism, cell type, and even chromatin activity. Certain chromatin remodeling factors govern accessibility of DNA to regulatory proteins by repositioning nucleosomes to reveal regulatory sites that would otherwise be occluded by a nucleosome.\

\ \

In contrast to histone modifications such as methylation or acetylation, which are investigated by ChIP-seq, nucleosome positioning data are generated without immunoprecipitation (see Methods below). Instead, micrococcal nuclease is used to digest chromatin to apparent completion, the (well-defined and clearly visible) mononucleosomal core fragment fraction is isolated by gel purification, and one end is then sequenced. Mapping the sequence tag back to the genome reveals the precise position of one end of the core fragment that was protected by the nucleosome; the position of the other end can then simply be inferred by extending the read to a virtual length of 147 bases. Statistical analyses such as occupancy and positioning stringency can then be employed to analyze the local nucleosome landscape anywhere in the (mappable) genome or to infer global parameters of nucleosome organization.\

\ \

In the context of the ENCODE project, nucleosome positioning data are particularly valuable for analysis of the relationship between transcription factor binding, histone modifications, and gene activity.\

\ \

For a general primer on these types of data and analyses, refer to Valouev et al. (2008).\

\ \

Display Conventions and Configuration

\ \

\ \

To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

\ \
\
Signal
Density graph (wiggle) of signal enrichment based on\ processed data. Signals displayed in this track are the results of pooled replicates.
\
\

Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

\ \

Methods

\ \

\ To isolate mononucleosome core DNA fragments from the GM12878 and K562\ ENCODE cell lines we followed the micrococcal nuclease (MNase) digestion and\ isolation protocol as described in Johnson et al. (2006), Valouev et al. (2008), and\ Valouev et al. (2011) with the following modifications. The precise concentrations of the\ two flash-frozen cell samples received from the Snyder Lab were not known so, per our\ standard procedure, we performed a series of digestions titrating the amount of MNase\ to determine the concentration of MNase for optimal digestion of each sample. Final\ concentrations of 25 U/μL and 50 U/μL of MNase were used to digest the GM12878\ cells and K562 cells respectively at 20°C for 12 min. All other steps in the digestion and\ isolation protocol were as described.\

\ \

\ Cells were grown according to the approved\ ENCODE cell culture protocols.\ K562 and GM12878 were each grown to ~2.5×108 cells. The cells were harvested, frozen and \ the nucleosome core isolation followed (Valouev et al. 2008).\

\ \

The SOLiD reads were mapped in color-space with the probabilistic mapper,\ DNAnexus. The DNAnexus mapper measures and propagates mapping uncertainty by including both quality values and mismatches in the alignment score calculation. The scores are then scaled across all possible mappings of the read to estimate the posterior probability for alignment to each genomic location. Reads corresponding to posterior probability of correct mapping > 0.9 were reported. \

\ \

Nucleosome density signal maps (bedgraph and bigwig files) were generated by \ first shifting reads by 74 bp in the 5´ to 3´ direction and counting \ the total number of reads starting at each genomic coordinate on both strands. \ These counts are then smoothed using un-normalized kernel density smoothing \ with a triweight kernel. A bandwidth of 30 bp is used which is equivalent to \ a smoothing window of 60 bp. The smoothed counts at each position are then \ divided by the expected number of reads from an equivalent uniform distribution \ of reads in a ± 30 bp window around that position. If less than 25% \ of the positions in a ± 30 bp window around a genomic location are \ uniquely mappable or if the location is part of an assembly gap, the signal \ value at that position is considered unreliable and not recorded in the signal \ files. Hence, genomic coordinates that do not have any associated signal value \ should be considered missing or unreliable data. Genomic coordinates associated \ with a signal value of 0 are reliably mapable but do not have any signal in the dataset.\

\ \

Verification

\ \

The data were validated by pooling together separate runs\ to give sufficient sequencing depth for a reasonable signal\ to noise ratio. Verification that each replicate\ shows similar strand-cross correlation profiles with a strong\ peak at approximately 147 bp indicates that the predominant fragment\ length is equal to the typical size of a mononucleosome.\

\ \

Credits

\ \

\ Michael Snyder (PI, Stanford University, California)\ \

\

\ Debasish Raha (Snyder lab) cell culture\

\ \

\ Steven Johnson (PI, Brigham Young University, Utah)\ \

\

\ Elliot Winters (Johnson lab) prepared the mononucleosome core fragments\

\ \

\ Arend Sidow (PI, Stanford University, California)\ \

\

\ Ziming Weng (Sidow lab) built the libraries\

\

\ Cheryl Smith (Sidow lab) sequenced the libraries\

\

\ Philippe Lacroute and Philipe Cayting (Stanford Center for Genomics and Personalized Medicine) managed the data submission\

\ \

\ Contact:\ \ Anshul Kundaje (Batzoglou and Sidow labs) mapped the data at DNAnexus and generated the signal tracks\ \

\ \

References

\ \

\ Johnson SM, Tan FJ, McCullough HL, Riordan DP, Fire AZ.\ \ Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin.\ Genome Res. 2006 Dec;16(12):1505-16.\

\ \

\ Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K et al.\ \ A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning.\ Genome Res. 2008 Jul;18(7):1051-63.\

\ \

\ Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, Sidow A.\ \ Determinants of nucleosome organization in primary human cells.\ Nature. 2011 May 22;474(7352):516-20.\

\ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column on the track configuration page and\ the download page. The full data release policy for ENCODE is available\ here.

\ regulation 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell\ dimensions dimensionX=cellType\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line replicate=Rep view=View dccAccession=UCSC_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ group regulation\ longLabel Nucleosome Position by MNase-seq from ENCODE/Stanford/BYU\ noInherit on\ priority 0\ shortLabel Stanf Nucleosome\ sortOrder cellType=+ view=+\ subGroup1 view Views Signal=Signal Alignments=Alignments\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1K562=K562 (Tier_1)\ track wgEncodeSydhNsome\ type bed 3\ visibilityViewDefaults Signal=full\ gnomADPextStomach Stomach bigWig 0 1 gnomAD pext Stomach 0 100 255 221 153 255 238 204 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Stomach.bw\ color 255,221,153\ longLabel gnomAD pext Stomach\ parent gnomadPext off\ shortLabel Stomach\ track gnomADPextStomach\ visibility hide\ svView Structural Variants bigBed 9 + Genome In a Bottle Structural Variants (dbVar nstd175) 3 100 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Genome In a Bottle Structural Variants (dbVar nstd175)\ parent giab\ shortLabel Structural Variants\ track svView\ type bigBed 9 +\ view sv\ visibility pack\ stsMap STS Markers bed 5 + STS Markers on Genetic (blue) and Radiation Hybrid (black) Maps 0 100 0 0 0 128 128 255 0 0 0

Description

\

This track shows locations of Sequence Tagged Site (STS) markers\ along the draft assembly. These markers have been mapped using either\ genetic mapping (Genethon, Marshfield, and deCODE maps), radiation\ hybridization mapping (Stanford, Whitehead RH, and GeneMap99 maps) or\ YAC mapping (the Whitehead YAC map) techniques. Since August 2001,\ this track no longer displays fluorescent in situ hybridization (FISH)\ clones, which are now displayed in a separate track.

\ \

Genetic map markers are shown in blue; radiation hybrid map markers\ are shown in black. When a marker maps to multiple positions in the\ genome, it is shown in a lighter color.

\ \

Methods

\

Positions of STS markers are determined using both full sequences\ and primer information. Full sequences are aligned using blat,\ while isPCR (Jim Kent) and ePCR are used to find\ locations using primer information. Both sets of placements are\ combined to give final positions. In nearly all cases, full sequence\ and primer-based locations are in agreement, but in cases of\ disagreement, full sequence positions are used. Sequence and primer\ information for the markers were obtained from the primary sites for\ each of the maps, and from NCBI UniSTS (now part of NCBI\ Probe).\ \

Using the Filter

\

The track filter can be used to change the color or include/exclude\ a set of map data within the track. This is helpful when many items\ are shown in the track display, especially when only some are relevant\ to the current task. To use the filter: \

    \
  • In the pulldown menu, select the map whose data you would like to\ highlight or exclude in the display. By default, the "All\ Genetic" option is selected.\
  • Choose the color or display characteristic that will be used to\ highlight or include/exclude the filtered items. If\ "exclude" is chosen, the browser will not display data from\ the map selected in the pulldown list. If "include" is\ selected, the browser will display only data from the selected map.\

\

When you have finished configuring the filter, click the\ Submit button.

\ \

Credits

\

This track was designed and implemented by Terry Furey. Many\ thanks to the researchers who worked on these maps, and to Greg\ Schuler, Arek Kasprzyk, Wonhee Jang, and Sanja Rogic for helping\ process the data. Additional data on the individual maps can be found\ at the following links:\

\

\ map 1 altColor 128,128,255,\ group map\ longLabel STS Markers on Genetic (blue) and Radiation Hybrid (black) Maps\ shortLabel STS Markers\ track stsMap\ type bed 5 +\ visibility hide\ wgEncodeUwRepliSeqViewSumSignal Summed Densities bed 3 Replication Timing by Repli-seq from ENCODE/University of Washington 0 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Replication Timing by Repli-seq from ENCODE/University of Washington\ parent wgEncodeUwRepliSeq\ shortLabel Summed Densities\ track wgEncodeUwRepliSeqViewSumSignal\ view v5SumSignal\ viewLimits 0:2500\ visibility hide\ windowingFunction mean+whiskers\ wgEncodeSunyAlbanyGeneSt SUNY RIP GeneST broadPeak RNA Binding Protein Associated RNA by RIP-chip GeneST from ENCODE/SUNY Albany 1 100 0 0 0 127 127 127 1 0 0

Description

\

This track is produced as part of the ENCODE Project.\ This track displays transcriptional fragments associated with RNA binding proteins in different\ cell lines\ using RIP-Chip (Ribonomic) profiling on Affymetrix GeneChip® Human Gene 1.0 ST Arrays.\ These sutracks show the genomic location of transcripts associated with the array probes.\ Data for this track was produced as part of the\ \ Encyclopedia of DNA Elements (ENCODE) Project.\ \

\ \ \

In eukaryotic organisms, gene regulatory networks require an additional\ level of coordination that links transcriptional and post-transcriptional\ processes. Messenger RNAs have traditionally been viewed as passive\ molecules in the pathway from transcription to translation. However,\ it is now clear that RNA-binding proteins play a major role in\ regulating multiple mRNAs in order to facilitate gene expression patterns.\ These tracks show the associated mRNAs that co-precipitate with the\ targeted RNA-binding proteins using RIP-Chip profiling.\

\ \ \

Display Conventions and Configuration

\

This track has multiple subtracks that display individually in the browser.\ The subtracks within this track correspond to different antibodies/target\ proteins tested in different cell lines.\ These subtracks show the genomic location of the mRNA transcripts associated with RNA Binding \ Proteins as determined by the Affymetrix GeneChip® Human Gene 1.0 ST Array probes.\ Items are shaded by p-value using the formula (maxPossibleScore-((maxPossibleScore/cutOffValue)*pValue))\ so that items with more significant expression levels are shaded darker. The p-values are\ displayed in the browser convention as -log10(pValue).\

\ \

Methods

\

RBP-mRNA complexes were purified from cells grown according to the approved\ ENCODE cell culture protocols.\ Antibodies specific to the RNA Binding Protein (RBP) in question were first coated onto protein A/G containing \ magnetic beads and then used to immunoprecipitate the targeted, endogenously-formed mRNP complexes. Antibody-coated\ beads were incubated/tumbled with cell lysate overnight in the cold followed by extensive rinsing and subsequent \ purification of associated RNA using Phenol/Chloroform extraction and ethanol precipitation.\ The associated transcripts were identified using GeneChip® Human Gene 1.0 ST Arrays.\ Arrays were analyzed using Agilent's GeneSpringGX software (version 11.0).\

\

\ Arrays were analyzed a group at a time by applying the Iterative PLIER16 algorithm using quantile normalization.\ Probesets whose normalized expression levels (signal value) fell within the 18 to 98 percentile in at least two of the three replicates\ were retained for further analysis. A TTest (T7-Tag and RIP-Input) or a one-way ANOVA (samples and controls)\ was applied to these probesets and a p-value cutoff of .05 was applied. The Benjamini-Hochberg false discovery rate \ algorithm was then applied to generate corrected p-values, also known as q-values.\

\ \

\ The RIP-Input was summarized first and selected probesets were retained for further analysis.\ Next, the arrays for T7Tag (background/negative control) RIPs were summarized with those retained RIP-input probesets.\ Probesets that fit the above criteria for either group (RIP-Input or T7Tag)\ were then filtered for those that showed a minimum 2 fold increase of expression in T7Tag versus RIP-Input.\ Finally, \ arrays for treatment RIP samples were summarized together with those for RIP-inputs and T7Tag RIPs. Probesets that fit the above \ criteria for any group (RIP-Input or T7Tag or samples) were\ then filtered for probesets that showed a minimum 2 fold increase of expression in treatment over total.\ A similar list was produced for probesets showing the same enrichment in the T7Tag RIP set. Probesets which appeared in both\ treatment and negative control at these cutoff stringencies were subtracted from the treatment results as background noise, yielding the final data track.\

\ \

Verification

\

\ All experiments (including controls) were performed in and analyzed as triplicates.\

\ \

Release Notes

\

Release 2 (September 2011) of this track corrects the scores and the calculated P and Q values.\ In this release, the calculated P and Q values are -log10(P) and -log10(Q), and the scores,\ and therefore the shading of items, reflect the p-values as described in the Display Conventions\ and Configuration section above.\ \

Credits

\ \

These data were produced and analyzed by a collaboration between the\ \ Tenenbaum lab\ at the University at Albany-SUNY, College of Nanoscale\ Science and Engineering, the\ \ Luiz Penalva group\ at the Greehey Children's Cancer Research Institute,\ University of Texas Health Science Center and the\ \ Microarray Core Facility at the Center for Functional Genomics, Rensselaer, NY .\

\

\ Contact:\ Scott Tenenbaum\ \
\ \

References

\ \

Baroni TE, Chittur SV, George AD, Tenenbaum SA.\ \ Advances in RIP-chip analysis : RNA-binding protein\ immunoprecipitation-microarray profiling.\ Methods Mol Biol. 2008;419:93-108.\

\ \

George AD, Tenenbaum SA.\ \ MicroRNA modulation of RNA-binding protein regulatory elements.\ RNA Biol. 2006;3(2):57-9. Epub 2006 Apr 1.\

\ \

Jain R, Devine T, George AD, Chittur SV, Baroni TE, Penalva LO, Tenenbaum SA.\ \ RNA-Binding Protein Immunoprecipitation-Microarray (Chip) Profiling.\ Methods Mol Biol. 2011;703:247-63\

\ \

Jayaseelan S, Doyle F, Currenti S, Tenenbaum SA.\ \ RIP: An mRNA Localization Technique.\ Methods Mol Biol. 2011;714:407-422.\

\ \

Keene JD, Tenenbaum SA.\ \ Eukaryotic mRNPs may represent posttranscriptional operons.\ Mol Cell. 2002;9(6):1161-7.\

\ \

Penalva LO, Tenenbaum SA, Keene JD.\ \ Gene expression analysis of messenger RNP complexes.\ Methods Mol Biol. 2004;257:125-34.\

\ \

Tenenbaum SA, Carson CC, Lager PJ, Keene JD.\ \ Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays.\ Proc Natl Acad Sci U S A. 2000 Dec 19;97(26):14085-90.\

\ \

Tenenbaum SA, Lager PJ, Carson CC, Keene JD.\ \ Ribonomics: identifying mRNA subsets in mRNP complexes using\ antibodies to RNA-binding proteins and genomic arrays.\ Methods. 2002 Feb;26(2):191-8.\

\ \ \ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

\ \ \ regulation 1 boxedCfg on\ canPack On\ compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell factor=antibody\ dimensions dimensionX=factor dimensionY=cellType\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line antibody=Target labVersion=Antibody view=View dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until md5sum=md5sum\ group regulation\ longLabel RNA Binding Protein Associated RNA by RIP-chip GeneST from ENCODE/SUNY Albany\ origAssembly hg18\ pValueFilter 0.0\ pValueFilterLimits 0:0.5\ priority 0\ scoreFilter 2\ scoreFilterLimits 1:1000\ shortLabel SUNY RIP GeneST\ sortOrder cellType=+ factor=+\ subGroup1 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2)\ subGroup2 factor Antibody_Target CELF1=CELF1 ELAVL1=ELAVL1 IGF2BP1=IGF2BP1 PABPC1=PABPC1 SLBP=SLBP T7Tag=T7Tag ripInput=RIP-Input\ superTrack wgEncodeRbpSuper dense\ track wgEncodeSunyAlbanyGeneSt\ type broadPeak\ useScore 1\ wgEncodeSunyAlbanyTiling SUNY RIP Tiling bed 3 RNA Binding Protein Associated RNA by Tiling Array from ENCODE/SUNY Albany 1 100 0 0 0 127 127 127 0 0 0

Description

\

This track is produced as part of the ENCODE Project.\ This track displays transcriptional fragments associated with RNA binding proteins in different\ cell lines,\ using RIP-Chip (Ribonomic) profiling on Affymetrix GeneChip ENCODE 2.0R Tiling Arrays.\ The RBP Assoc RNA view shows the genomic location of transcripts\ associated with the array probes.\ Data for this track was produced as part of the\ \ Encyclopedia of DNA Elements (ENCODE) Project.\ \

\ \ \

In eukaryotic organisms, gene regulatory networks require an additional\ level of coordination that links transcriptional and post-transcriptional\ processes. Messenger RNAs have traditionally been viewed as passive\ molecules in the pathway from transcription to translation. However,\ it is now clear that RNA-binding proteins play a major role in\ regulating multiple mRNAs in order to facilitate gene expression patterns.\ These tracks show the associated mRNAs that co-precipitate with the\ targeted RNA-binding proteins using RIP-Chip profiling.\

\ \ \

Display Conventions and Configuration

\

This track is a multi-view composite track. For each view there\ are multiple subtracks that display individually in the browser.\ The subtracks within this track correspond to different antibodies/target\ proteins tested in different cell lines.\ This track is initially released with a single view:\

\
\
RBP Assoc RNA\
The RBP Assoc RNA view shows the genomic extent of the transcriptional segments\ associated with the Affymetrix Tiling Array probes.\
\ Instructions for configuring multi-view tracks are\ \ here.\ \

Methods

\

RBP-mRNA complexes were purified from cells grown according to the approved\ ENCODE cell culture protocols .\ The associated transcriptional fragments were identified using Affymetrix GeneChip ENCODE 2.0R Tiling Arrays.\ Arrays were analyzed using Affymetrix Tiling Analysis Software (TAS) version 1.1.\

\

\ Total Input and T7Tag (negative control)\ tracks were each developed by single sample analysis of their respective triplicate sets with quantile normalization and linear\ scaling applied. Probe signals were calculated using the Hodges-Lehmann estimator with a bandwidth of 100 bases.\ Resulting signal files were examined to develop percentiles. Interval analysis was performed using a minimum cut-off\ equal to the 95th percentile signal score, a minimum run of 21 (3 * platform resolution) and max gap of 63 (9 * platform resolution).\

\

\ Treatment RIP tracks (e.g., ELAVL1, PABC1) were developed by two sample analysis with T7Tag used as\ the control. Quantile normalization and scaling was applied to these sample groups individually.\ Probe signals were calculated with the Hodges-Lehmann estimator using signal log (log2) ratios and a bandwidth of 100 bases.\ Resulting signal files were examined to develop percentiles. Interval analysis was performed using a minimum cut-off\ equal to the 95th percentile signal ratio score, a minimum run of 21 (3 * platform resolution) and max gap of 63 (9 * platform resolution).\ \

\

For additional RIP methods detail, see\ Tenenbaum et al. 2002; Baroni et al. 2008; Penalva\ et al. 2004, below.\ \ \ \

Verification

\ \

\ All experiments (including controls) performed in and analyzed as triplicates.\

\ \

Credits

\ \

These data were produced and analyzed by a collaboration between the\ \ Tenenbaum lab\ at the University at Albany-SUNY, College of Nanoscale\ Science and Engineering, the\ \ Luiz Penalva group\ at the Greehey Children's Cancer Research Institute,\ University of Texas Health Science Center and the\ \ Microarray Core Facility at the Center for Functional Genomics, Rensselaer, NY .\

\ \

\ Contact:\ \ STenenbaum@uamail.\ albany.\ edu\ \
\ \ \

References

\ \

Tenenbaum SA, Lager PJ, Carson CC, Keene JD.\ \ Ribonomics: identifying mRNA subsets in mRNP complexes using\ antibodies to RNA-binding proteins and genomic arrays.\ Methods. 2002 Feb;26(2):191-8.\ \

\ \

Baroni TE, Chittur SV, George AD, Tenenbaum SA.\ \ Advances in RIP-chip analysis : RNA-binding protein\ immunoprecipitation-microarray profiling.\ Methods Mol Biol. 2008;419:93-108.\

\ \

Penalva LO, Tenenbaum SA, Keene JD.\ \ Gene expression analysis of messenger RNP complexes.\ Methods Mol Biol. 2004;257:125-34.\

\ \

Keene JD, Tenenbaum SA.\ \ Eukaryotic mRNPs may represent posttranscriptional operons.\ Mol Cell. 2002;9(6):1161-7.\

\ \

George AD, Tenenbaum SA.\ \ MicroRNA modulation of RNA-binding protein regulatory elements.\ RNA Biol. 2006;3(2):57-9. Epub 2006 Apr 1.\

\ \ \ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

\ \ \ regulation 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell antibody=antibody\ dimensions dimensionX=antibody dimensionY=cellType\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line antibody=Target labVersion=Antibody dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until md5sum=md5sum\ group regulation\ longLabel RNA Binding Protein Associated RNA by Tiling Array from ENCODE/SUNY Albany\ noInherit on\ origAssembly hg19\ priority 0\ shortLabel SUNY RIP Tiling\ sortOrder cellType=+ antibody=+\ subGroup1 view Views RbpAssocRna=RBP_Assoc_RNA\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1K562=K562 (Tier_1)\ subGroup3 antibody Antibody_Target ELAVL1=ELAVL1 PABPC1=PABPC1 T7Tag=T7Tag ripInput=Input\ superTrack wgEncodeRbpSuper dense\ track wgEncodeSunyAlbanyTiling\ type bed 3\ visibilityViewDefaults RbpAssocRna=hide\ wgEncodeSunyRipSeq SUNY RIP-seq bed 3 RIP-seq from ENCODE/SUNY Albany 1 100 0 0 0 127 127 127 0 0 0

Description

\

The RNA binding protein (RBP) associated mRNA sequencing track (RIP-Seq) is produced as part of\ the Encyclopedia of DNA Elements (ENCODE) Project.\ This track displays transcriptional fragments associated with RBP in \ cell lines K562 and GM12878,\ using Ribonomic profiling via Illumina SBS.\

\ \

In eukaryotic organisms gene regulatory networks require an additional\ level of coordination that links transcriptional and post-transcriptional\ processes. Messenger RNAs have traditionally been viewed as passive\ molecules in the pathway from transcription to translation. However,\ it is now clear that RNA-binding proteins play a major role in\ regulating multiple mRNAs in order to facilitate gene expression patterns.\ These tracks show the associated mRNAs that co-precipitate with the\ targeted RNA-binding proteins using RIP-Seq profiling.\

\ \ \

Display Conventions and Configuration

\

This track is a multi-view composite track. For each view there\ are multiple subtracks that display individually in the browser.\ The subtracks within this track correspond to different antibodies/target\ proteins tested in different cell lines.\

\ \

\

\
Peaks\
The Peaks view shows the genomic extent of the sequencing read peaks.\

\

Signal\
Density graph of signal enrichment based on a normalized aligned read density\ (Read Per Million, RPM). RPM is reported in the score field and is equal to the number of reads at\ that position divided by the total number of reads divided by one million. The Signal view is\ unflitered and displays dense, continuous data as a graph and the RPM measure assists in\ visualizing the relative amount of a given transcript across multiple samples.
\

\

Alignments\
The Alignments view shows reads mapped to the genome.\ The alignment file follows the standard SAM format of Bowtie output. \ See the\ Bowtie Manual\ for more information about the SAM Bowtie output and the\ SAM Format Specification\ for more information on the SAM/BAM file format. \
\
\ \ Instructions for configuring multi-view tracks are\ here.\ \

Methods

\

RBP-mRNA complexes were purified from cells grown according to the approved\ ENCODE cell culture protocols .\ RNA samples were amplified and converted to cDNA with the\ Nugen Ovation© RNA-Seq System and prepped for sequencing with the\ Illumina mRNA-Seq protocol. \ \ Approximately 30 million single end sequencing reads were obtained for each K562 and GM12878.\ RIP samples were analyzed for signal that was at or above the 60th percentile and statistically enriched compared to the negative control.\ Sequences were analyzed using TopHat (Trapnell et al., 2009) with \ Bowtie (Langmead et al., 2009).\

\

\ Peaks were called from the top 40% of TopHat normalized reads,\ with a max gap, min run of (24:48).\ Unions of overlapping peak regions from total RNA replicates (RIP-Input) are presented with p-value \ from a one tailed t-test for average signal from replicates versus 0 \ (no cut-off was used for totals). Replicate overlap for positive RIP treatment peaks (ELAVL1 and PABPC1) \ are presented with a p-value from one tailed t-test versus signal for same the region in negative \ control replicates (T7-tag). RIP peaks were from sequences longer than 120 bp and p-value < .05.\ For both totals (RIP-input) and RIPs, the peak scores are scaled relative p-values between treatment and control.\

\ \ \

Credits

\

These data were produced and analyzed by a collaboration between the\ Tenenbaum lab at the University at Albany-SUNY, College of Nanoscale\ Science and Engineering,the \ Luiz Penalva group at the Greehey Children's Cancer Research Institute,\ University of Texas Health Science Center and the \ Microarray Core Facility at the Center for Functional Genomics, Rensselaer, NY.\

\ \

\ Contact:\ Scott Tenenbaum\ \
\

\ \ \

References

\ \

Baroni TE, Chittur SV, George AD, Tenenbaum SA.\ \ Advances in RIP-chip analysis : RNA-binding protein\ immunoprecipitation-microarray profiling\ . \ Methods Mol Biol. 2008;419:93-108.\

\ \

George AD, Tenenbaum SA.\ \ MicroRNA modulation of RNA-binding protein regulatory elements\ . \ RNA Biol. 2006;3(2):57-9. Epub 2006 Apr 1.\

\ \

Keene JD, Tenenbaum SA.\ \ Eukaryotic mRNPs may represent posttranscriptional operons\ . \ Mol Cell. 2002;9(6):1161-7.\

\ \

Langmead B, Trapnell C, Pop M, Salzberg SL.\ \ Ultrafast and memory-efficient alignment of short DNA sequences to the human genome\ . \ Genome Biology. 2009 Mar; 10:R25.

\ \

Penalva LO, Tenenbaum SA, Keene JD.\ \ Gene expression analysis of messenger RNP complexes\ . \ Methods Mol Biol. 2004;257:125-34.\

\ \

Tenenbaum SA, Lager PJ, Carson CC, Keene JD.\ \ Ribonomics: identifying mRNA subsets in mRNP complexes using\ antibodies to RNA-binding proteins and genomic arrays\ . \ Methods. 2002 Feb;26(2):191-8.\

\ \ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

\ \ regulation 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell factor=antibody\ dimensionZchecked Pooled\ dimensions dimX=factor dimY=cellType dimZ=rep\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line antibody=Antibody
Target labVersion=Antibody replicate=Rep view=View dccAccession=UCSC_Accession geoSampleAccession=GEO_Accesssion fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until md5sum=md5sum\ group regulation\ longLabel RIP-seq from ENCODE/SUNY Albany\ noInherit on\ priority 0\ shortLabel SUNY RIP-seq\ sortOrder cellType=+ factor=+ view=+ rep=+\ subGroup1 view Views Peaks=Peaks Signal=Signal Alignments=Alignments\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1K562=K562 (Tier_1)\ subGroup3 factor Target_Protein ELAVL1=ELAVL1 PABPC1=PABPC1 ripInput=RIP-Input T7Tag=T7Tag\ subGroup4 rep Replicate rep1=1 rep2=2 Pooled=Pooled\ superTrack wgEncodeRbpSuper dense\ track wgEncodeSunyRipSeq\ type bed 3\ wgEncodeSunySwitchgear SUNY SwitchGear bed 3 RNA Binding Protein Associated RNA by SwitchGear from ENCODE/SUNY Albany 0 100 0 0 0 127 127 127 1 0 0

Description

\

This track is produced as part of the \ Encyclopedia of DNA Elements (ENCODE) Project\ and displays 3' UTR regions associated with RNA binding proteins in the \ HT-1080\ cell line using reporters.\

\ \ \

In eukaryotic organisms gene regulatory networks require an additional\ level of coordination that links transcriptional and post-transcriptional\ processes. Messenger RNAs have traditionally been viewed as passive\ molecules in the pathway from transcription to translation. However,\ it is now clear that RNA-binding proteins play a major role in\ regulating multiple mRNAs in order to facilitate gene expression patterns.\ These tracks show RNA binding protein associated (predicted via RIP-chip) mRNA 3' UTRs\ whose attachment to a reporter gene led to a change of that reporter's\ expression when the associated RBP's level was altered. This experiment was proposed as\ a validation for the data found in SUNY RBP\ which is the precursor to the hg19 track SUNY GeneST.\ It was done on a small set of targets chosen from the earliest RIP arrays. \

\ \ \

Display Conventions and Configuration

\

This is a composite track containing multiple subtracks that display individually \ in the browser. The subtracks within this track correspond to different\ mRNA 3' UTRs attached to a reporter and tested for a response to a change in a particular\ RNA binding protein's level.\ To display only selected subtracks, uncheck the boxes next to the tracks you wish to hide.\ \ \

Methods

\

\ IGF2BP1 targets were identified by RIP-chip and cross referenced with Switchgear's 3' UTR luciferase reporter clone inventory.\ 50 ng of putative IGF2BP1 target 3'UTR reporter DNA was individually co-transfected with either 20 ng IGF2BP1(IMP1) cDNA (Origene, SC116030)\ or alone (untreated). Each transfection was performed in triplicate. The DNA was combined with FuGene transfection reagent (Roche)\ and allowed to complex for 30 minutes before being added to 7500 HT-1080 (ATCC) cells resuspended in warmed, complete media before\ being aliquotted into 96 well plates. Cells were returned to the incubator for 24 hours before 100 uL SteadyGlo Luciferase assay reagent\ was added to each well. The plate was incubated for 30 minutes before being read on a LmaxII-384 luminometer. Signals were normalized using\ controls and significance of treatment versus control was calculated via a two-tailed t-test.\

\

\ ELAVL1 targets were identified by RIP-chip and cross referenced with SwitchGear's 3' UTR luciferase reporter clone inventory.\ We seeded 5,000 HT-1080 cells into 96-well plates the day before transfection and incubated overnight. 50 ng of putative ELAVL1 target 3'UTR\ reporter DNA was individually co-transfected with either 10ng ELAVL1(HuR) cDNA ( Origene, SC119271) or alone (untreated). Each transfection\ was performed in triplicate. The DNA was combined with FuGene transfection reagent (Roche) and allowed to complex for 30 minutes before being\ added to 7500 HT-1080 (ATCC) cells resuspended in warmed, complete media before being aliquotted into 96 well plates. Cells were returned to\ the incubator for 24 hours before 100 uL SteadyGlo Luciferase assay reagent was added to each well. The plate was incubated for 30 minutes before\ being read on a LmaxII-384 luminometer. Signals were normalized using controls and significance of treatment versus control was calculated via a\ two-tailed t-test.\

\ \ \ \

For additional Switchgear 3' UTR reporter assay information, see\ SwitchGear Genomics.\ \ \

Verification

\ \

\ All experiments (including controls) performed in and analyzed as triplicates.\

\ \

Credits

\ \

These data were produced and analyzed by a collaboration between the\ \ Tenenbaum lab\ at the University at Albany-SUNY, College of Nanoscale\ Science and Engineering, and\ \ SwitchGear Genomics.\ \

\ Contact:\ \ Scott Tenenbaum\ \
\ \

References

\

SwitchGear Reporter Related:

\

\ SwitchGear Publications\ \

\ \ \

RIP Related:

\ \ \

Baroni TE, Chittur SV, George AD, Tenenbaum SA.\ \ Advances in RIP-chip analysis : RNA-binding protein\ immunoprecipitation-microarray profiling.\ Methods Mol Biol. 2008;419:93-108.\

\ \

George AD, Tenenbaum SA.\ \ MicroRNA modulation of RNA-binding protein regulatory elements.\ RNA Biol. 2006;3(2):57-9. Epub 2006 Apr 1.\

\ \

Keene JD, Tenenbaum SA.\ \ Eukaryotic mRNPs may represent posttranscriptional operons.\ Mol Cell. 2002;9(6):1161-7.\

\ \

Penalva LO, Tenenbaum SA, Keene JD.\ \ Gene expression analysis of messenger RNP complexes.\ Methods Mol Biol. 2004;257:125-34.\

\ \

Tenenbaum SA, Lager PJ, Carson CC, Keene JD.\ \ Ribonomics: identifying mRNA subsets in mRNP complexes using\ antibodies to RNA-binding proteins and genomic arrays.\ Methods. 2002 Feb;26(2):191-8.\

\ \ \ \ \ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

\ \

\ regulation 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell factor=antibody\ dimensions dimensionX=factor dimensionY=cellType\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line antibody=Target
Protein view=View dccAccession=UCSC_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ group regulation\ longLabel RNA Binding Protein Associated RNA by SwitchGear from ENCODE/SUNY Albany\ noInherit on\ priority 0\ shortLabel SUNY SwitchGear\ sortOrder cellType=+ factor=+\ subGroup1 cellType Cell_Line HT1080=HT-1080\ subGroup2 factor Target_Protein ELAVL1=ELAVL1 PABPC1=PABPC1 T7Tag=T7Tag IGF2BP1=IGF2BP1\ track wgEncodeSunySwitchgear\ type bed 3\ useScore 0\ wgEncodeSunyAlbanyTilingView SunyAlbanyTiling broadPeak RNA Binding Protein Associated RNA by Tiling Array from ENCODE/SUNY Albany 3 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RNA Binding Protein Associated RNA by Tiling Array from ENCODE/SUNY Albany\ minGrayLevel 100\ pValueFilter 0.0\ pValueFilterLimits 0:5\ parent wgEncodeSunyAlbanyTiling\ scoreFilter 2\ scoreFilterLimits 1:800\ shortLabel SunyAlbanyTiling\ track wgEncodeSunyAlbanyTilingView\ type broadPeak\ view RbpAssocRna\ viewUi on\ visibility pack\ switchDbTss SwitchGear TSS bed 6 + SwitchGear Genomics Transcription Start Sites 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This track describes the location of transcription start sites (TSS) throughout\ the human genome along with a confidence measure for each TSS based on\ experimental evidence. The TSSs of a gene are important landmarks that help \ define the promoter regions of a gene. These TSSs were determined by \ SwitchGear Genomics\ by integrating experimental data using an empirically derived scoring \ function. Each TSS has a unique identifier that associates it with a gene model \ (see details below), and each TSS is color-coded to reflect its confidence\ score.\

\ \

\ These TSSs are also available in a searchable format at \ SwitchDB,\ an open-access online database of human TSSs. Expermental tools are available \ through \ SwitchGear\ to study the function of the promoter regions associated with\ these TSSs.

\ \

Methods

\

\ The predicted TSSs are associated with a genome-wide set of gene models.\ SwitchGear gene models are defined as clusters of cDNA alignments that have\ overlapping exons on the same strand. These gene models were created from over\ 250,000 human cDNA alignments to construct a genome-wide set of ~37,000 gene\ models. Each gene model is identified by its chromosome number, strand, and\ unique identifier. For example, ID CHR7_P0362 \ indicates a cDNA cluster (0362) aligning to the plus strand (P) of\ chromosome 7 (CHR7). Existing gene annotation is mapped to the gene models \ through the NCBI annotation associated with Refseq accession numbers.\

\ \

\ The SwitchGear TSS prediction algorithm identifies the most likely sites of\ transcription initiation for each gene model. The algorithm employs a scoring\ metric to assign a confidence level to each TSS prediction based on existing\ experimental evidence. In addition to the ~250,000 human cDNAs listed in \ Genbank, more than 5 million additional 5' human cDNA sequence tags have been\ generated using a combination of approaches. While these short sequence reads do\ not reveal gene structure, they provide a significant amount of experimental\ evidence for identifying transcript start sites. For each gene model, the\ algorithm counts the number of TSSs (defined as the 5' end of a cDNA) within\ 200 bp of one another. The TSS score is based on the total number of TSSs\ identified within this window, with each TSS weighted according to several\ discriminating features: cDNA library source, relative location within the gene\ model, and exon structure of the transcript. Furthermore, the TSSs for each\ gene model are ranked to identify the TSS representing the most likely\ transcription initiation site for a gene model. Rankings are indicated in the\ TSS unique identifier by the addition of a suffix (i.e. CHR7_P0362_R1 or \ CHR7_P0362_R2).\

\ \

Using the Filter

\

\ This track has a filter that can be used to change the TSS elements displayed \ by the browser. This filter is based on the score of the TSS element. The \ filter is located at the top of the track description page, which is accessed \ via the small button to the left of the track's graphical display or through \ the link on the track's control menu. By default the track displays only those \ TSSs with a score of 10 or above.\

\ \

\ By default, the TSSs for predicted pseudogenes are not displayed. If you would \ like to display them, check the box next to the Include TSSs for predicted \ pseudogenes label.\

\ \

\ When you have finished configuring the filter, click the Submit button.\

\ \

Credits

\

\ This track was created by Nathan Trinklein and Shelley Force Aldred of \ SwitchGear Genomics.\

\ regulation 1 group regulation\ longLabel SwitchGear Genomics Transcription Start Sites\ origAssembly hg17\ pennantIcon 17.jpg ../goldenPath/help/liftOver.html "lifted from hg17"\ shortLabel SwitchGear TSS\ track switchDbTss\ type bed 6 +\ visibility hide\ wgEncodeSydhHistone SYDH Histone bed 3 Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard 1 100 0 0 0 127 127 127 0 0 0

Description

\

This track, produced as part of the ENCODE Project,\ displays maps of histone modifications genome-wide using ChIP-seq in different\ cell lines.\ The ChIP-seq method involves first using formaldehyde\ to cross-link histones and other DNA-associated proteins to genomic DNA \ within cells. The cross-linked chromatin is subsequently extracted, \ sheared, and immunoprecipitated using specific antibodies. \ After reversal of cross-links, the immunoprecipitated DNA is\ sequenced and mapped to the human reference genome. The relative \ enrichment of each antibody-target (epitope) across the genome is \ inferred from the density of mapped fragments.\

\ \

Chemical modifications (e.g. methylation or acetylation) of \ the histone proteins present in chromatin influence gene expression\ by changing how accessible the chromatin is to transcription factors.\ Shown for each\ experiment (defined as a particular antibody and a particular\ cell type) is a track of enrichment for the specifically modified\ histone (Signal), along with sites that have the\ greatest enrichment (Peaks). Also, included for each\ cell type is the input signal, which represents the\ control condition where no antibody targeting was performed.\ In general, the following chemical modifications have associated genetic\ phenotypes:\

\
    \
  • H3K4me3 and H3K9ac are considered to be marks of active\ or potentially active promoter regions
    • \
  • H3K4me1 and H3K27ac are\ considered to be marks of active or potentially active enhancer\ regions\\
    • \
  • H3K36me3 and H3K79me2 are considered to be marks of\ transcriptional elongation
    • \
  • H3K27me3 and H3K9me3 are\ considered to be marks of inactive regions.
    • \
\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains multiple data types\ (views). For each view, there are multiple subtracks that display\ individually on the browser. Instructions for configuring multi-view tracks\ are here.\

\

\ For each cell type, this track contains the following views:\

\
Peaks
\
Regions of signal enrichment based on processed data (usually normalized data from pooled replicates).
\
Signal
\
Density graph (wiggle) of signal enrichment based on aligned read density.
\
\

\

Peaks and signals displayed in this track are the results of pooled replicate\ sequence. Alignment files for each replicate are available for\ download.\

\

Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

\ \

Methods

\ \

\ Cells were grown according to the approved\ ENCODE cell culture protocols.\ Briefly, cells were cross-linked, chromatin was extracted and sonicated\ using a Bioruptor sonicator (Diagenode) to an average size of 300-500 bp,\ and individual ChIP assays were performed using antibodies to modified histones.\ For the K562, MCF-7, HCT-116, NTera-2 (NT2-D1), PANC-1 and PBMC histone ChIP-seq samples, immunoprecipitates were \ collected using protein G-coupled magnetic beads; a detailed\ ChIP and library\ protocol\ can be found at the Roadmap Epigenome Project.\ For the U2OS histone ChIP-seq samples, immunoprecipitates were collected using \ StaphA cells.\ \ Library DNA was quantitated using either a Nanodrop or a BioAnalyzer and sequenced on an Illumina GA2. \

\ \

\ The sequencing reads were mapped to the genome using the Eland alignment program.\ ChIP-seq data was scored based on sequence reads (length ~30 bps) that align uniquely\ to the human genome. From the mapped tags, a signal map of ChIP DNA fragments\ (average fragment length ~ 200 bp) was constructed where the \ signal height is the number of overlapping fragments at each nucleotide position in the genome. \

\ \

\ For each 1 Mb segment of each chromosome, a peak height threshold was determined by\ requiring a false discovery rate <= 0.05 when comparing the number of peaks \ above threshold as compared to the number obtained from multiple simulations of \ a random null background with the same number of mapped reads\ (also accounting for the fraction of mapable bases for sequence tags in that 1 Mb segment).\ The number of mapped tags in a putative binding region is compared to the\ normalized (normalized by correlating tag counts in genomic 10 kb windows) \ number of mapped tags in the same region from an input DNA control. \ Using a binomial test, only regions that have a p-value <= 0.05 are considered \ to be significantly enriched compared to the input DNA control. \

\ \

Release Notes

\

\ This is Release 3 (June 2012) of this track, which adds 9 new experiments for the MCF-7, HCT-116 and PANC-1 cell lines. \

\ \ \

Credits

\ \

\ These data were generated and analyzed by the labs of Peggy Farnham\ (USC/Norris Cancer Center; previously at UC Davis) and Michael Snyder\ at Stanford University.\

\

\ Contact:\ Peggy Farnham\ \ for questions concerning data collection and usage \ and \ Philip Cayting\ \ for data scoring and submission inquiries.\

\ \

References

\ \ \

\ Blahnik KR, Dou L, Echupare L, Iyengar S, O'Geen H, et al.\ Characterization of the Contradictory Chromatin Signatures at the 3' Exons of Zinc Finger Genes.\ PLoS One. 2011;6(2):e17121.\

\

\ O'Geen H, Echipare L, Farnham PJ\ \ \ Using ChIP-seq technology to generate high-resolution profiles of histone modifications.\ Methods Mol Biol. 2011;791;265-286.\

\ \

\ O'Geen H, Frietze S, Farnham PJ \ \ Using ChIP-seq Technology to Identify Targets of Zinc Finger Transcription Factors.\ Methods Mol Biol. 2010;649:437-455.\

\ \ \ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

\ \ regulation 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell factor=antibody control=control treatment=treatment\ dimensions dimensionX=factor dimensionY=cellType\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line antibody=Antibody
Target replicate=Rep view=View controlId=Control_ID dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ group regulation\ html wgEncodeSydhHistone.release3\ longLabel Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard\ nextItemButton on\ noInherit on\ origAssembly hg19\ priority 0\ shortLabel SYDH Histone\ sortOrder cellType=+ factor=+ view=+\ subGroup1 view Views Peaks=Peaks Signal=Signal\ subGroup2 cellType Cell_Line aK562=K562 (Tier_1) bMCF7=MCF-7 (Tier_2) cHCT116=HCT-116 cNT2D1=NT2-D1 cPANC1=PANC-1 cPBMC=PBMC cU2OS=U2OS\ subGroup3 factor Factor H3K04ME1=H3K4me1 H3K04ME3B=H3K4me3 H3K09acB=H3K9ac H3K09ME3=H3K9me3 H3K27AC=H3K27ac H3K27me3B=H3K27me3 H3K36me3B=H3K36me3 INPUT=Input\ subGroup4 control Control UCD=UC_Davis\ subGroup5 treatment Treatment NONE=None\ superTrack wgEncodeHistoneSuper dense\ track wgEncodeSydhHistone\ type bed 3\ visibilityViewDefaults Peaks=pack Signal=full\ wgEncodeSydhRnaSeq SYDH RNA-seq bed 3 RNA-seq from ENCODE/Stanford/Yale/USC/Harvard 1 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ The tracks show enrichment of RNA sequence tags generated by\ high throughput sequencing (RNA-seq) and mapped to the human\ genome. Double stranded cDNA was synthesized from\ polyadenylated RNA (polyA+) . \ PCR amplified, adapter ligated cDNA, 150-300nt\ long, was sequenced on an Illumina GA sequencer.\

\

\ Where designated, cell lines received specific treatments prior to\ RNA isolation. As indicated, K562 cells were treated with either\ interferon-a or interferon-g for 30 minutes or 6 hours. These\ experiments were carried out in conjunction with ChIP-Seq\ experiments on the transcription factors STAT1 and STAT2 in order\ to examine the effects that inducers of a specific transcriptional\ response might have on gene expression and on transcription factor\ binding site discovery. K562 cells were treated with a-amanitin in\ order to examine the effects of RNA polymerase II inhibition on RNA\ polymerase III-mediated transcription.\

\ \

This track shows expression data generated as confirmation\ of the\ \ SYDH TFBS\ tracks currently available on genome-preview.\

\ \ \

Display Conventions and Configuration

\

\ This is a composite track that contains multiple data types\ (views). Instructions for configuring composite\ tracks are here.\ \

\
Raw Signal
Density graph (wiggle) of signal enrichment.
\
Alignments\
The Alignments view shows reads mapped to the genome and indicates where\ bases may mismatch. The alignment file follows the standard SAM format of Bowtie output with the\ following additions: the custom tags X0 X1 XN XM XO XG XT XA XS XF XE are present. These tags are\ described by the\ BWA specifications.\ See the\ Bowtie Manual\ for more information about the SAM Bowtie output (including other tags) and the\ SAM Format Specification\ for more information on the SAM/BAM file format. \
\
\ \

Methods

\

\ Cells were grown according to the approved\ ENCODE cell culture protocols.\ \ Total RNA was extracted using TRIzol reagents\ (15596-018, Life Tech), following the manufacturer's protocol.\ For polyA+ samples, polyadenylated RNA was purified using the\ MicroPoly(A) Purist kit (AM1919, Life Tech) and fragmented using\ RNA Fragmentation Reagent (AM8740, Life Tech). Illumina adapters\ were ligated to double stranded cDNA which was synthesized using\ reagents from Life Tech (11917-010).\ \

\

\ PCR amplified adapter ligated cDNA (150-300 bp) was sequenced\ using Illumina GA. Sequence reads of 27-33nt long with 0-2\ mismatches were mapped to the genome. The signal height\ corresponds to the number of overlapping fragments at each\ nucleotide position in the genome. Samples originally mapped to the\ hg18 version of the human genome were remapped to hg19 using\ the BWA aligner, version 0.5.7.\

\ \ \ \

Credits

\

These data were generated and analyzed by the labs of\ Michael Snyder,\ Mark Gerstein and\ Sherman Weissman at Yale University;\ Peggy Farnham at USC; and\ Kevin Struhl at Harvard.\ \

\   \ Contact: Gerstein Lab.\ \

\ \

References

\ \

\ Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, Gerstein M, Snyder M.\ \ The transcriptional landscape of the yeast genome defined by RNA sequencing.\ Science. 2008 Jun 6;320(5881):1344-9.\

\ \

\ Raha D, Wang Z, Moqtaderi Z, Wu L, Zhong G, Gerstein M, Struhl K, Snyder M.\ \ Close association of RNA polymerase II and many transcription factors with Pol III genes.\ Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3639-44.\

\ \

\ Wu JQ, Habegger L, Noisa P, Szekely A, Qiu C, Hutchison S, Raha D, Egholm M, Lin H, Weissman S et al.\ \ Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing.\ Proc Natl Acad Sci U S A. 2010 Mar 16;107(11):5254-9.\

\ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column on the track configuration page and\ the download page. The full data release policy for ENCODE is available\ here.

\ expression 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell treatment=treatment rnaExtract=rnaExtract\ dimensions dimensionX=cellType dimensionY=treatment\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line treatment=treatment view=View dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ group expression\ html wgEncodeSydhRnaSeq.patch\ longLabel RNA-seq from ENCODE/Stanford/Yale/USC/Harvard\ noInherit on\ priority 0\ shortLabel SYDH RNA-seq\ sortOrder cellType=+ treatment=+ view=+\ subGroup1 view Views RawSignal=_Raw_Signal Alignments=Alignments\ subGroup2 cellType Cell_Line t1K562=K562 (Tier_1)\ subGroup3 treatment Treatment None=None AMA50ug9h=AMA50ug9h IFNg6h=IFNg6h IFNg30=IFNg30 IFNa30=IFNa30 IFNa6h=IFNa6h\ subGroup4 rnaExtract RnaExtract nonPolyA=PolyA- polyA=PolyA+ nonPolyARRna=PolyA-_rRna-\ superTrack wgEncodeRnaSeqSuper dense\ track wgEncodeSydhRnaSeq\ type bed 3\ wgEncodeSydhTfbs SYDH TFBS bed 3 Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

This track shows probable binding sites of the specified transcription\ factors (TFs) in the given cell types as determined by chromatin\ immunoprecipitation followed by high throughput sequencing (ChIP-seq).\ Included for each cell type is the input signal, which represents the control\ condition where no antibody targeting was performed.\ For each experiment (cell type vs. antibody) this track shows\ a graph of enrichment for TF binding (Signal), along with\ sites that have the greatest evidence of transcription factor binding (Peaks).\

\ The sequence reads, quality scores, and alignment coordinates from\ these experiments are available for download.\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains multiple data types\ (views). For each view, there are multiple subtracks that\ display individually on the browser. Instructions for configuring multi-view\ tracks are here.\ ENCODE tracks typically contain one or more of the following views:\

\
Peaks
Regions of signal enrichment based on processed data\ (normalized data from pooled replicates). ENCODE Peaks tables contain\ fields for statistical significance,\ including the minimum false discovery rate (FDR) threshold at which the test may be called significant\ (qValue).
\
Signal
Density graph (wiggle) of signal enrichment based on\ processed data.
\
\

Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

\ \

Methods

\

\ Cells were grown according to the approved\ ENCODE cell culture protocols.\ Further preparations were similar to those previously published\ (Euskirchen et al., 2007) with the exceptions that the cells\ were unstimulated and sodium orthovanadate was omitted from the buffers.\ For details on the chromatin immunoprecipitation protocol used, see\ (Euskirchen et al., 2007) and (Rozowsky et al., 2009).\

\

\ DNA recovered from the precipitated chromatin was sequenced on the Illumina (Solexa)\ sequencing platform and mapped to the genome using the Eland alignment program.\ ChIP-seq data was scored based on sequence reads (length ~30 bp) that align uniquely\ to the human genome. From the mapped tags a signal map of ChIP DNA fragments\ (average fragment length ~ 200 bp) was constructed where the signal height is the number of\ overlapping fragments at each nucleotide position in the genome.\

\

\ For each 1 Mb segment of each chromosome a peak height threshold was\ determined by requiring a false discovery rate less than or equal to 0.05 when comparing the\ number of peaks above threshold as compared the number obtained from multiple\ simulations of a random null background with the same number of mapped\ reads (also accounting for the fraction of mapable bases\ for sequence tags in that 1 Mb segment). The number of mapped tags in a putative\ binding region is compared to the normalized (normalized by correlating tag\ counts\ in genomic 10 kb windows) number of mapped tags in the same region from an input DNA control.\ Using a binomial test, only regions that have a p-value less than or equal to 0.05 are considered to be\ significantly enriched compared to the input DNA control.\

\ \

Release Notes

\

\ This is Release 3 (August 2012). This release adds in 37 new experiments including 1 new cell line and 7 new antibodies.\

\ \

Credits

\

These data were generated and analyzed by the labs of\ Michael Snyder at Stanford University;\ Mark Gerstein and\ Sherman Weissman at Yale University;\ Peggy Farnham at University of Southern California; and\ Kevin Struhl at Harvard.

\

\ Contact:\ Philip Cayting.\ \

\ \

References

\ \

\ Cao AR, Rabinovich R, Xu M, Xu X, Jin VX, Farnham PJ.\ \ Genome-wide analysis of transcription factor E2F1 mutant proteins reveals that N- and C-terminal protein interaction domains do not participate in targeting E2F1 to the human genome.\ J Biol Chem. 2011 Apr 8;286(14):11985-96.\

\ \

\ Euskirchen G, Royce TE, Bertone P, Martone R, Rinn JL, Nelson FK, Sayward F, Luscombe NM, Miller P, Gerstein M et al.\ \ CREB binds to multiple loci on human chromosome 22.\ Mol Cell Biol. 2004 May;24(9):3804-14.\

\ \

\ Euskirchen GM, Rozowsky JS, Wei CL, Lee WH, Zhang ZD, Hartman S, Emanuelsson O, Stolc V, Weissman S, Gerstein MB et al.\ \ Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies.\ Genome Res. 2007 Jun;17(6):898-909.\

\ \

\ Iyengar S, Ivanov AV, Jin VX, Rauscher FJ 3rd, Farnham PJ.\ \ Functional analysis of KAP1 genomic recruitment.\ Mol Cell Biol. 2011 May;31(9):1833-47.\

\ \

\ Martone R, Euskirchen G, Bertone P, Hartman S, Royce TE, Luscombe NM, Rinn JL, Nelson FK, Miller P, Gerstein M et al.\ \ Distribution of NF-kappaB-binding sites across human chromosome 22.\ Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12247-52.\

\ \

\ Robertson G, Hirst M, Bainbridge M, Bilenky M, Zhao Y, Zeng T, Euskirchen G, Bernier B, Varhol R, Delaney A et al.\ \ Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing.\ Nat Methods. 2007 Aug;4(8):651-7.\

\ \

\ Rozowsky J, Euskirchen G, Auerbach RK, Zhang ZD, Gibson T, Bjornson R, Carriero N, Snyder M, Gerstein MB.\ \ PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls.\ Nat Biotechnol. 2009 Jan;27(1):66-75.\

\ \

Publications

\ \

\ Kang YA, Sanalkumar R, O'Geen H, Linnemann AK, Chang CJ, Bouhassira EE, Farnham PJ, Keles S, Bresnick EH.\ \ Autophagy driven by a master regulator of hematopoiesis.\ Mol Cell Biol. 2012 Jan;32(1):226-39.\

\ \

\ Krebs AR, Karmodiya K, Lindahl-Allen M, Struhl K, Tora L.\ \ SAGA and ATAC histone acetyl transferase complexes regulate distinct sets of genes and ATAC defines a class of p300-independent enhancers.\ Mol Cell. 2011 Nov 4;44(3):410-23.\

\ \

\ Linnemann AK, O'Geen H, Keles S, Farnham PJ, Bresnick EH.\ \ Genetic framework for GATA factor function in vascular biology.\ Proc Natl Acad Sci U S A. 2011 Aug 16;108(33):13641-6.\

\ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column on the track configuration page and\ the download page. The full data release policy for ENCODE is available\ here.

\ regulation 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell factor=antibody control=control treatment=treatment\ dimensionAchecked STD,IGGMUS,IGGRAB,UCD\ dimensionZchecked aNone,IFNa30,IFNa6h,IFNg30,IFNg6h\ dimensions dimensionX=cellType dimensionY=factor dimensionZ=treatment dimensionA=control\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line antibody=Antibody
Target treatment=Treatment view=View control=Control setType=Type dccAccession=UCSC_Accession geoSampleAccession=GEO
Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ filterComposite dimZ=one dimA=multi\ group regulation\ html wgEncodeSydhTfbs.release3\ longLabel Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard\ noInherit on\ origAssembly hg19\ priority 0\ shortLabel SYDH TFBS\ sortOrder cellType=+ factor=+ control=+ treatment=+ view=+\ subGroup1 view Views Peaks=Peaks Signal=Signal\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2A549=A549 (Tier_2) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2IMR90=IMR90 (Tier_2) t2MCF7=MCF-7 (Tier_2) t2SKNSH=SK-N-SH (Tier_2) t3GM08714=GM08714 t3GM10847=GM10847 t3GM12891=GM12891 t3GM12892=GM12892 t3GM15510=GM15510 t3GM18505=GM18505 t3GM18526=GM18526 t3GM18951=GM18951 t3GM19099=GM19099 t3GM19193=GM19193 t3HCT116=HCT-116 t3HEK293=HEK293 t3HEK293TREX=HEK293-T-REx t3MCF10AERSRC=MCF10A-Er-Src t3NB4=NB4 t3NT2D1=NT2-D1 t3PANC1=PANC-1 t3PBDE=PBDE t3PBDEFETAL=PBDEFetal t3RAJI=Raji t3SHSY5Y=SH-SY5Y t3U2OS=U2OS\ subGroup3 factor Factor AP2alpha=AP-2α AP2gamma=AP-2γ ARID3ANB100279=ARID3A_(NB100-279) ARID3ASC8821=ARID3A_(SC-8821) ATF106325=ATF1_(06-325) ATF3=ATF3 BACH1SC14700=Bach1_(SC-14700) BAF155=BAF155 BAF170=BAF170 BDP1=BDP1 BHLHE40=BHLHE40_(SC-101023) BHLHE40NB100=BHLHE40_(NB100-1800) BRCA1A300=BRCA1_(A300-000A) BRF1=BRF1 BRF2=BRF2 BRG1=BRG1 CCNT2=CCNT2 CDPSC6327=CDP_(SC-6327) CEBPB=CEBPB CEBPZ=CEBPZ CFOS=c-FOS CHD1A301218A=CHD1_(A301-218A) CHD1NB10060411=CHD1_(NB100-60411) CHD2=CHD2_(AB68301) CJUN=c-Jun CMYC=c-Myc CORESTAB24166=COREST_(ab24166) CORESTSC30189=COREST_(SC-30189) CTBP2=CtBP2 CTCFb=CTCF_(SC-15914) E2F1=E2F1 E2F4=E2F4 E2F6=E2F6 EBF1SC137065=EBF1_(SC-137065) ELK112771=ELK1_(1277-1) ELK4=ELK4 ERRA=ERRA GATA1=GATA1 GATA1b=GATA1_(SC-266) GATA2=GATA2 GATA3=GATA3_(SC-268) GATA3SC269=GATA3_(SC-269) GCN5=GCN5 GRP20=GRp20 GTF2B=GTF2B GTF2F1=GTF2F1_(AB28179) HAE2F1=HA-E2F1 HCFC1NB10068209=HCFC1_(NB100-68209) HMGN3=HMGN3 HNF4A=HNF4A HSF1=HSF1 IKZF1IKNUCLA=IKZF1_(IkN)_(UCLA) INI1=INI1 IRF1=IRF1 IRF3=IRF3 JUND=JunD KAP1=KAP1 MAFFM8194=MafF_(M8194) MAFK=MafK_(ab50322) MafKsc477=MafK_(SC477) MAX=Max MAZAB85725=MAZ_(ab85725) MXI1=Mxi1_(AF4185) NFE2=NF-E2 NFE2SC22827=NF-E2_(SC-22827) NELFE=NELFe NFKB=NFKB NFYA=NF-YA NFYB=NF-YB NRF1=Nrf1 P300=p300 P300SC48343=p300_(SC-48343) P300SC584=p300_(SC-584) PGC1A=PGC1A POL2=Pol2 POL2S2=Pol2(phosphoS2) POL3=POL3 PRDM19115=PRDM1_(9115) RAD21=Rad21 RFX5200401194=RFX5_(200-401-194) RPC155=RPC155 SETDB1=SETDB1 SIN3ANB6001263=SIN3A_(NB600-1263) SIRT6=SIRT6 SMC3ab9263=SMC3_(ab9263) SPT20=SPT20 SREBP1=SREBP1 SREBP2=SREBP2 STAT1=STAT1 STAT2=STAT2 STAT3=STAT3 SUZ12=SUZ12 TAL1SC12984=TAL1_(SC-12984) TBLR1AB24550=TBLR1_(ab24550) TBLR1NB600270=TBLR1_(NB600-270) TBP=TBP TCF7L2=TCF7L2 TCF7L2C9B92565=TCF7L2_C9B9_(2565) TF3C110=TFIIIC-110 TR4=TR4 UBFSC13125=UBF_(SC-13125) UBTFSAB1404509=UBTF_(SAB1404509) USF2=USF2 WHIP=WHIP XRCC4=XRCC4 YY1=YY1 ZC3H11ANB10074650=ZC3H11A_(NB100-74650) ZKSCAN1HPA006672=ZKSCAN1_(HPA006672) ZNF143166181AP=ZNF143_(16618-1-AP) ZNF217=ZNF217 ZNF263=ZNF263 ZNF274=ZNF274 ZNF274M01=ZNF274_(M01) ZNF384HPA004051=ZNF384_(HPA004051) ZNFMIZDCP1AB65767=ZNF-MIZD-CP1_(ab65767) ZZZ3=ZZZ3 ZZZINPUTHVD=Input_(Harvard) ZZZINPUTIGGgoat=Input_(IgG-goat) ZZZINPUTIGGmus=Input_(IgG-mus) ZZZINPUTIGGrab=Input_(IgG-rab) ZZZINPUTLARGE=Input_(Large_Fragment) ZZZINPUTMNASE=Input_(MNase) ZZZINPUTNAKED=Input_(Naked_DNA) ZZZINPUTSTD=Input_(Standard) ZZZINPUTUCD=Input_(UC_Davis)\ subGroup4 control Control HVD=Harvard IGGGOAT=IgG-goat IGGMUS=IgG-mus IGGRAB=IgG-rab LargeFragment=Large_Fragment MNase=MNase NakedDNA=Naked_DNA STD=Standard UCD=UC_Davis\ subGroup5 treatment Treatment aNONE=None ETOH01b=EtOH_0.01%_4_hr ETOH01c=EtOH_0.01%_12_hr ETOH01d=EtOH_0.01%_36_hr FORSKLN=Forskolin IFNa30=IFNα_30_min IFNa6h=IFNα_6_hr IFNg30=IFNγ_30_min IFNg6h=IFNγ_6_hr INSLN=Insulin MNaseD=MNaseD PRAVAST=Pravastatin TNFa=TNFa TTAM=4-hydroxytamoxifen_36_hr TTAM112H=4-hydroxytamoxifen_12_hr TTAM14H=4-hydroxytamoxifen_14_hr\ superTrack wgEncodeTfBindingSuper hide\ track wgEncodeSydhTfbs\ type bed 3\ visibilityViewDefaults Peaks=pack Signal=full\ gnomADPextTestis Testis bigWig 0 1 gnomAD pext Testis 0 100 170 170 170 212 212 212 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Testis.bw\ color 170,170,170\ longLabel gnomAD pext Testis\ parent gnomadPext off\ shortLabel Testis\ track gnomADPextTestis\ visibility hide\ tfbsConsSites TFBS Conserved bed 6 + HMR Conserved Transcription Factor Binding Sites 0 100 0 0 0 127 127 127 1 0 0 http://www.gene-regulation.com/cgi-bin/pub/databases/transfac/getTF.cgi?AC=$$

Description

\

\ This track contains the location and score of transcription factor\ binding sites conserved in the human/mouse/rat alignment. A binding\ site is considered to be conserved across the alignment if its score\ meets the threshold score for its binding matrix in all 3 species.\ The score and threshold are computed with the Transfac Matrix Database (v7.0) created by\ Biobase. \ The data are purely computational, and as such not all binding sites\ listed here are biologically functional binding sites.\

\

\ In the graphical display, each box represents one conserved putative tfbs. Clicking on\ a box brings up detailed information on the binding site, namely its\ Transfac I.D., a link to its Transfac Matrix (free registration with Transfac\ required), its location in the human genome (chromosome, start, end,\ and strand), its length in bases, its raw score, and its Z score.\

\

\ All binding factors that are known to bind to the particular binding matrix \ of the binding site\ are listed along with their species, SwissProt ID, and a link to that\ factor's page on the UCSC Protein Browser if such an entry exists.\

\ \

Methods

\ \

\ The Transfac Matrix Database (v.7.0) contains position-weight matrices for \ 398 transcription factor binding sites, as characterized through\ experimental results in the scientific literature. Only binding matrices\ for known transcription factors in human, mouse, or rat were used for this\ track (258 of the 398). A typical (in this\ case ficticious) matrix (call it mat) will look something like:

\
\ 
\
        A      C      G      T\
01     15     15     15     15      N\
02     20     10     15     15      N\
03      0      0     60      0      G\
04     60      0      0      0      A\
05      0      0      0     60      T\
\
\ The above matrix specifies the results of 60 (the sum of each row)\ experiments. In the experiments, the first position of the binding site\ was A 15 times, C 15 times, G 15 times, and T 15 times (and so on for\ each position.) The consensus sequence of the above binding site as\ characterized by the matrix is NNGAT. The format of the consensus sequence\ is the deduced consensus in the IUPAC 15-letter code.\

\

\ In the general case, the goal is to find all matches to a matrix of length n\ that are conserved across ns sequences. For this example, n=5 and \ ns=3 (human, mouse, and rat.) Denote the multispecies alignment s,\ such that sji is the nucleotide at position j of species i. Also,\ define an ns x 4 background matrix (call it back) giving the background \ frequencies of each nucleotide in each species. A sliding window (of length n)\ calculates the "species score" for each species at each position:

\


\ \ From this, a log-odds score is calculated for each species (normalizing by the\ length of the matrix and the number of species in the alignment):

\

\ \ These scores are then summed for all species, yielding a final log-odds score for\ the current position:

\

\ \ Note that the log-odds score of each species must exceed the threshold for that \ species. The threshold is calculated for each species such that the only hits\ that will be reported will have a Z score (to be discussed later) of 1.64 or \ higher in each species (corresponding to a p-value of 0.05). Next, the maximum \ and minimum possible log-odds scores\ are computed and summed across all species for the given binding matrix:

\

\

\ These are then used to normalize the final, raw log-odds score so that its range is\ between 0 and 1:

\

\ Next, the best raw score for each binding matrix is calculated for the 5,000 base \ upstream region of each human RefSeq gene (taken from the RefGene table for hg19.)\ The mean and standard deviation for each binding matrix are then calculated across\ all RefSeq genes. These are then used to create the threshold for each binding matrix,\ namely, 1.64 standard deviations above the mean. Tfloc is then run with this threshold\ on each chromosome for the 3-way multiz alignments. Finally, a Z score is calculated \ for each binding site hit h to matrix m according to the following formula:

\

\ This final Z score can be interpreted as the number of standard deviations above the\ mean raw score for that binding matrix across the upstream regions of all RefSeq genes.\ The default Z score cutoff for display in the browser is 2.33 (corresponding to a p-value\ of 0.01.) This cutoff can be adjusted at the top of this page.
\

\

\ After all hits have been recorded genome-wide, one final filtering step is performed.\ Due to the inherant redundancy of the Transfac database, several binding sites that\ all bind the same factor often appear together. For example, consider the following\ binding sites:
\

\ 
\
585     chr1    4021    4042    V$MEF2_02       875     -       2.83\
585     chr1    4021    4042    V$MEF2_03       917     -       3.38\
585     chr1    4021    4042    V$MEF2_04       844     -       3.45\
585     chr1    4022    4037    V$HMEF2_Q6      810     -       2.34\
585     chr1    4022    4037    V$MEF2_01       802     -       2.47\
585     chr1    4022    4038    V$RSRFC4_Q2     875     -       2.65\
585     chr1    4022    4039    V$AMEF2_Q6      823     -       2.44\
585     chr1    4023    4038    V$RSRFC4_01     878     +       2.53\
585     chr1    4024    4035    V$MEF2_Q6_01    913     +       2.41\
585     chr1    4024    4039    V$MMEF2_Q6      861     -       2.39\
\ \ These 10 overlapping binding sites bind a total of 19 factors. However,\ of these 19 factors, only 7 of them are unique. Many of the above \ binding sites are redundant (they add no additional factors). In fact, the first\ 3 binding sites all bind the same two factors (namely, aMEF-2 and MEF-2A). These ten binding\ sites can therefore be filtered down to the following four binding sites, without any\ loss of information (in terms of transcription factors). The final table entry\ then has the following four lines, since these four binding sites account for\ all 7 of the unique factors:
\
\ 
\
585     chr1    4021    4042    V$MEF2_04       844     -       3.45\
585     chr1    4022    4038    V$RSRFC4_Q2     875     -       2.65\
585     chr1    4024    4035    V$MEF2_Q6_01    913     +       2.41\
585     chr1    4024    4039    V$MMEF2_Q6      861     -       2.39\
\ \ In the event that multiple binding sites bind the same factors, the site with \ the highest Z score is chosen. Only binding sites which overlap each other\ and whose start positions are within 5 bases of each other are considered for \ merging.\

\

\ It should be noted that the positions of many of these conserved binding\ sites coincide with known exons and other highly conserved regions.\ Regions such as these are more likely to contain false positive matches,\ as the high sequence identity across the alignment increases the likelihood of\ a short motif that looks like a binding site to be conserved. Conversely,\ matches found in introns and intergenic regions are more likely to be real\ binding sites, since these regions are mostly poorly conserved.\

\

\ These data were obtained by running the program tfloc (Transcription Factor binding \ site LOCater) on multiz46way alignments, restricting only to the July 2007 (mm9) mouse genome assembly, the November 2004 rat assembly (rn4), and the February 2009 human genome assembly (hg19). \ Transcription factor information was culled from the Transfac Factor\ database, version 7.0.\

\

Table Format

\

\ The format of the tfbsConsSites sql table is shown above.\ The columns are (from left to right): bin, chromosome, from, to, binding matrix ID, raw score,\ strand, and Z score.\

\

\ To get the corresponding transcription factor information for a given binding matrix, use the table\ tfbsConsFactors. The format of the tfbsConsFactors sql table is:
\

\ 
\
V$MYOD_01       M00001  mouse   MyoD    P10085\
V$E47_01        M00002  human   E47     N\
V$CMYB_01       M00004  mouse   c-Myb   P06876\
V$AP4_01        M00005  human   AP-4    Q01664\
V$MEF2_01       M00006  mouse   aMEF-2  Q60929\
V$MEF2_01       M00006  rat     MEF-2   N\
V$MEF2_01       M00006  human   MEF-2A  Q02078\
V$ELK1_01       M00007  human   Elk-1   P19419\
V$SP1_01        M00008  human   Sp1     P08047\
V$EVI1_06       M00011  mouse   Evi-1   P14404\
\
\ The columns are (from left to right): transfac binding matrix id, \ transfac binding matrix accession number, transcription factor species, \ transcription factor name, SwissProt accesssion number.\ When no factor species, name, or id information exists in the transfac factor\ database for a binding matrix, an 'N' appears in the corresponding column(s). Notice also\ that if more than one transcription factor is known for one binding matrix, each occurs on its own line, \ so multiple lines can exist for one binding matrix.\ \

\

\

Credits

\

\ These data were generated using the Transfac Matrix and Factor databases created by\ Biobase.\

\

\ The tfloc program was developed at The Pennsylvania State University (with numerous \ updates done at UCSC) by Matt Weirauch.\

\

\ This track was created by Matt Weirauch and Brian Raney at The\ University of California at Santa Cruz.\

\ \ regulation 1 group regulation\ longLabel HMR Conserved Transcription Factor Binding Sites\ scoreMax 1000\ scoreMin 671\ shortLabel TFBS Conserved\ spectrum on\ track tfbsConsSites\ type bed 6 +\ url http://www.gene-regulation.com/cgi-bin/pub/databases/transfac/getTF.cgi?AC=$$\ urlLabel Transfac matrix link:\ visibility hide\ gnomADPextThyroid Thyroid bigWig 0 1 gnomAD pext Thyroid 0 100 0 102 0 127 178 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Thyroid.bw\ color 0,102,0\ longLabel gnomAD pext Thyroid\ parent gnomadPext off\ shortLabel Thyroid\ track gnomADPextThyroid\ visibility hide\ transMapV5 TransMap V5 TransMap Alignments Version 5 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ These tracks contain cDNA and gene alignments produced by\ the TransMap cross-species alignment algorithm\ from other vertebrate species in the UCSC Genome Browser.\ For closer evolutionary distances, the alignments are created using\ syntenically filtered LASTZ or BLASTZ alignment chains, resulting\ in a prediction of the orthologous genes in human. For more distant\ organisms, reciprocal best alignments are used.\

\ \ TransMap maps genes and related annotations in one species to another\ using synteny-filtered pairwise genome alignments (chains and nets) to\ determine the most likely orthologs. For example, for the mRNA TransMap track\ on the human assembly, more than 400,000 mRNAs from 25 vertebrate species were\ aligned at high stringency to the native assembly using BLAT. The alignments\ were then mapped to the human assembly using the chain and net alignments\ produced using BLASTZ, which has higher sensitivity than BLAT for diverged\ organisms.\

\ Compared to translated BLAT, TransMap finds fewer paralogs and aligns more UTR\ bases.\

\ \

Display Conventions and Configuration

\ \

\ This track follows the display conventions for \ PSL alignment tracks.

\

\ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare cDNAs against the genomic sequence. For more \ information about this option, click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\ \

Methods

\ \

\

    \
  1. Source transcript alignments were obtained from vertebrate organisms\ in the UCSC Genome Browser Database. BLAT alignments of RefSeq Genes, GenBank \ mRNAs, and GenBank Spliced ESTs to the cognate genome, along with UCSC Genes,\ were used as available.\
  2. For all vertebrate assemblies that had BLASTZ alignment chains and\ nets to the human (hg19) genome, a subset of the alignment chains were\ selected as follows:\
      \
    • For organisms whose branch distance was no more than 0.5\ (as computed by phyloFit, see Conservation track description for details),\ syntenic filtering was used. Reciprocal best nets were used if available;\ otherwise, nets were selected with the netfilter -syn command.\ The chains corresponding to the selected nets were used for mapping.\
    • For more distant species, where the determination of synteny is difficult,\ the full set of chains was used for mapping. This allows for more genes to\ map at the expense of some mapping to paralogous regions. The\ post-alignment filtering step removes some of the duplications.\
    \
  3. The pslMap program was used to do a base-level projection of\ the source transcript alignments via the selected chains\ to the human genome, resulting in pairwise alignments of the source transcripts to\ the genome.\
  4. The resulting alignments were filtered with pslCDnaFilter\ with a global near-best criteria of 0.5% in finished genomes\ (human and mouse) and 1.0% in other genomes. Alignments\ where less than 20% of the transcript mapped were discarded.\
\

\ \

\ To ensure unique identifiers for each alignment, cDNA and gene accessions were\ made unique by appending a suffix for each location in the source genome and\ again for each mapped location in the destination genome. The format is:\ 

\
   accession.version-srcUniq.destUniq\
\ \ Where srcUniq is a number added to make each source alignment unique, and\ destUniq is added to give the subsequent TransMap alignments unique\ identifiers.\

\

\ For example, in the cow genome, there are two alignments of mRNA BC149621.1.\ These are assigned the identifiers BC149621.1-1 and BC149621.1-2.\ When these are mapped to the human genome, BC149621.1-1 maps to a single\ location and is given the identifier BC149621.1-1.1. However, BC149621.1-2\ maps to two locations, resulting in BC149621.1-2.1 and BC149621.1-2.2. Note\ that multiple TransMap mappings are usually the result of tandem duplications, where both\ chains are identified as syntenic.\

\ \

Data Access

\ \

\ The raw data for these tracks can be accessed interactively through the\ Table Browser or the\ Data Integrator.\ For automated analysis, the annotations are stored in\ bigPsl files (containing a\ number of extra columns) and can be downloaded from our\ download server, \ or queried using our API. For more \ information on accessing track data see our \ Track Data Access FAQ.\ The files are associated with these tracks in the following way:\

    \
  • TransMap Ensembl - hg19.ensembl.transMapV5.bigPsl
    • \
  • TransMap RefGene - hg19.refseq.transMapV5.bigPsl
    • \
  • TransMap RNA - hg19.rna.transMapV5.bigPsl
    • \
  • TransMap ESTs - hg19.est.transMapV5.bigPsl
    • \
\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed, which can be compiled from the source code or downloaded as\ a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, for example:\

\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/transMap/V5/hg19.refseq.transMapV5.bigPsl\ -chrom=chr6 -start=0 -end=1000000 stdout\ \ \

Credits

\ \

\ This track was produced by Mark Diekhans at UCSC from cDNA and EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide and annotations produced by the RefSeq,\ Ensembl, and GENCODE annotations projects.

\ \

References

\

\ Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S,\ Lau C et al.\ \ Targeted discovery of novel human exons by comparative genomics.\ Genome Res. 2007 Dec;17(12):1763-73.\ PMID: 17989246; PMC: PMC2099585\

\ \

\ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\

\ \

\ Zhu J, Sanborn JZ, Diekhans M, Lowe CB, Pringle TH, Haussler D.\ \ Comparative genomics search for losses of long-established genes on the human lineage.\ PLoS Comput Biol. 2007 Dec;3(12):e247.\ PMID: 18085818; PMC: PMC2134963\

\ \ genes 0 group genes\ html transMapV5\ longLabel TransMap Alignments Version 5\ shortLabel TransMap V5\ superTrack on\ track transMapV5\ tRNAs tRNA Genes bed 6 + Transfer RNA Genes Identified with tRNAscan-SE 0 100 0 20 150 127 137 202 0 0 0

Description

\

\ This track displays tRNA genes predicted by using \ tRNAscan-SE v.1.23. \

\

\ tRNAscan-SE is an integrated program that uses tRNAscan (Fichant) and an A/B box motif detection \ algorithm (Pavesi) as pre-filters to obtain an initial list of tRNA candidates. \ The program then filters these candidates with a covariance model-based \ search program \ COVE (Eddy) to obtain a highly specific set of primary sequence \ and secondary structure predictions that represent 99-100% of true tRNAs \ with a false positive rate of fewer than 1 per 15 gigabases.

\

\ Detailed tRNA annotations for eukaryotes, bacteria, and archaea are available at\ Genomic tRNA Database (GtRNAdb). \

\

\ What does the tRNAscan-SE score mean? Anything with a score above 20 bits is likely to be\ derived from a tRNA, although this does not indicate whether the tRNA gene still encodes a \ functional tRNA molecule (i.e. tRNA-derived SINES probably do not function in the ribosome in translation).\ Vertebrate tRNAs with scores of >60.0 (bits) are likely to encode functional tRNA genes, and \ those with scores below ~45 have sequence or structural features that indicate they probably are\ no longer involved in translation. tRNAs with scores between 45-60 bits are in the "grey" zone, and may\ or may not have all the required features to be functional. In these cases, tRNAs should be inspected\ carefully for loss of specific primary or secondary structure features (usually in alignments with other\ genes of the same isotype), in order to make a better educated guess. These rough score range guides \ are not exact, nor are they based on specific biochemical studies of atypical tRNA features,\ so please treat them accordingly.\

\

\ Please note that tRNA genes marked as "Pseudo" are low scoring predictions that are mostly pseudogenes or \ tRNA-derived elements. These genes do not usually fold into a typical cloverleaf tRNA secondary \ structure and the provided images of the predicted secondary structures may appear rotated.\

\ \

Credits

\

\ Both tRNAscan-SE and GtRNAdb are maintained by the\ Lowe Lab at UCSC.\

\

\ Cove-predicted tRNA secondary structures were rendered by NAVIEW (c) 1988 Robert E. Bruccoleri.\

\ \

References

\

\ When making use of these data, please cite the following articles:

\

\ Chan PP, Lowe TM. \ GtRNAdb: a database of transfer RNA genes detected in genomic sequence.\ Nucleic Acids Res. 2009 Jan;37(Database issue):D93-7.\ PMID: 18984615; PMC: PMC2686519\

\ \

\ Eddy SR, Durbin R. \ \ RNA sequence analysis using covariance models.\ Nucleic Acids Res. 1994 Jun 11;22(11):2079-88.\ PMID: 8029015; PMC: PMC308124\

\ \

\ Fichant GA, Burks C. \ \ Identifying potential tRNA genes in genomic DNA sequences.\ J Mol Biol. 1991 Aug 5;220(3):659-71.\ PMID: 1870126\

\ \

\ Lowe TM, Eddy SR. \ \ tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.\ Nucleic Acids Res. 1997 Mar 1;25(5):955-64.\ PMID: 9023104; PMC: PMC146525\

\ \

\ Pavesi A, Conterio F, Bolchi A, Dieci G, Ottonello S.\ \ Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix\ analysis of transcriptional control regions.\ Nucleic Acids Res. 1994 Apr 11;22(7):1247-56.\ PMID: 8165140; PMC: PMC523650\

\ genes 1 color 0,20,150\ group genes\ longLabel Transfer RNA Genes Identified with tRNAscan-SE\ nextItemButton on\ noScoreFilter .\ shortLabel tRNA Genes\ track tRNAs\ type bed 6 +\ visibility hide\ targetScanS TS miRNA sites bed 6 . TargetScan miRNA Regulatory Sites (Release 5.1, April 2009) 0 100 0 96 0 127 175 127 0 0 0 http://www.targetscan.org/cgi-bin/targetscan/vert_50/view_gene.cgi?gs=$P&taxid=9606&members=$p&showcnc=1

Description

\

\ This track shows conserved mammalian microRNA regulatory target sites\ for conserved microRNA families in\ the 3' UTR regions of Refseq Genes, as predicted by TargetScanHuman 5.1.

\ \

Method

\

\ Putative miRNA binding sites in UTRs were identified using seven-nucleotide\ seed regions from all known miRNA families conserved across mammals.\ Using all human RefSeq transcripts and CDS annotation from NCBI,\ aligned vertebrate 3' UTRs were extracted from multiz alignments and masked\ for overlap with protein-coding sequences.\ These 3' UTRs were scanned to identify conserved matches to the miRNA seed\ region, as in Friedman et al., 2009.\ These sites were then assigned a percentile rank (0 to 100) based on their\ context score (Grimson et al., 2007).\ For further details of the methods used to generate\ this annotation, see the references\ and the TargetScan\ website.

\ \

Credit

\

\ Thanks to George Bell of\ Bioinformatics and Research Computing at the Whitehead\ Institute for providing this annotation, which was generated in collaboration\ with the labs of David Bartel and Chris Burge.\ Additional information on microRNA target prediction is available on the\ TargetScan website.\

\ \

References

\ \

\ Lewis BP, Burge CB, Bartel DP.\ \ Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are\ microRNA targets.\ Cell. 2005 Jan 14;120(1):15-20.\ PMID: 15652477\

\ \

\ Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, Bartel DP.\ \ MicroRNA targeting specificity in mammals: determinants beyond seed pairing.\ Mol Cell. 2007 Jul 6;27(1):91-105.\ PMID: 17612493; PMC: PMC3800283\

\ \

\ Friedman RC, Farh KK, Burge CB, Bartel DP.\ \ Most mammalian mRNAs are conserved targets of microRNAs.\ Genome Res. 2009 Jan;19(1):92-105.\ PMID: 18955434; PMC: PMC2612969\

\ regulation 1 color 0,96,0\ longLabel TargetScan miRNA Regulatory Sites (Release 5.1, April 2009)\ parent targetScanMiRnaSites\ scoreFilterMax 100\ shortLabel TS miRNA sites\ track targetScanS\ type bed 6 .\ url http://www.targetscan.org/cgi-bin/targetscan/vert_50/view_gene.cgi?gs=$P&taxid=9606&members=$p&showcnc=1\ urlLabel TargetScan link:\ targetScanMiRnaSites TS miRNA Targets TargetScan predicted microRNA target sites 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ TargetScan \ is a web resource that provides predictions of biological targets of microRNAs by \ searching for the presence of sites that match the seed region of each miRNA.\ The TargetScan browser tracks show conserved mammalian microRNA regulatory target sites\ for conserved microRNA families in the 3' UTR regions of human Refseq Genes.\

\ \

Credit

\

\ Thanks to George Bell of\ Bioinformatics and Research Computing at the Whitehead\ Institute for providing this annotation, which was generated in collaboration\ with the labs of David Bartel and Chris Burge.\ Additional information on microRNA target prediction is available on the\ TargetScan website.\

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ or the Data Integrator. For automated analysis, the data may\ be queried from our REST API. Please refer to our\ mailing list archives\ for questions, or our Data Access FAQ for more\ information.\

\ \

\ Data is also freely available on the\ TargetScan website.\

\ \

References

\ \

\ Agarwal V, Bell GW, Nam JW, Bartel DP.\ \ Predicting effective microRNA target sites in mammalian mRNAs.\ Elife. 2015 Aug 12;4.\ PMID: 26267216; PMC: PMC4532895\

\ \

\ Garcia DM, Baek D, Shin C, Bell GW, Grimson A, Bartel DP.\ \ Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and\ other microRNAs.\ Nat Struct Mol Biol. 2011 Sep 11;18(10):1139-46.\ PMID: 21909094; PMC: PMC3190056\

\ \

\ Friedman RC, Farh KK, Burge CB, Bartel DP.\ \ Most mammalian mRNAs are conserved targets of microRNAs.\ Genome Res. 2009 Jan;19(1):92-105.\ PMID: 18955434; PMC: PMC2612969\

\ \

\ Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, Bartel DP.\ \ MicroRNA targeting specificity in mammals: determinants beyond seed pairing.\ Mol Cell. 2007 Jul 6;27(1):91-105.\ PMID: 17612493; PMC: PMC3800283\

\ \

\ Lewis BP, Burge CB, Bartel DP.\ \ Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are\ microRNA targets.\ Cell. 2005 Jan 14;120(1):15-20.\ PMID: 15652477\

\ regulation 0 group regulation\ longLabel TargetScan predicted microRNA target sites\ shortLabel TS miRNA Targets\ superTrack on\ track targetScanMiRnaSites\ visibility hide\ targetScanMiRnaSitesV72 TS miRNA v7.2 bigBed 12 + Predicted microRNA Target Sites from TargetScanHuman 7.2 (March 2018) 3 100 0 0 0 127 127 127 0 0 0 http://www.targetscan.org/cgi-bin/targetscan/vert_72/view_gene.cgi?gs=$P&taxid=9606&members=$p&showcnc=1

Description

\

\ This track shows conserved mammalian microRNA regulatory target sites\ for conserved microRNA families in\ the 3' UTR regions of Refseq Genes, as predicted by TargetScanHuman 7.2.\

\ \

Display Conventions

\

\ The track items are colored based on the four classes of target sites identified in \ Agarwal et al., 2015. \

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Purple8mer
Red7mer-m8
Blue7mer-A1
GreenNon-canonical
\ \ \

Method

\

\ Putative miRNA binding sites in UTRs were found by searching for conserved \ 8mer, 7mer, and 6mer sites that match the seed regions from all known miRNA\ families in mammals. Using protein-coding human transcripts from GENCODE v19\ and RefSeq, aligned vertebrate 3' UTRs were extracted from Multiz alignments to\ create 3' UTR profiles. These 3' UTRs were scanned to identify conserved \ matches to the miRNA seed region, as in Friedman et al., 2009. These \ sites were then assigned a percentile rank based on their\ context++\ score (Agarwal et al., 2015). This field is set to -1 for some\ noncanonical sites where the context++ score model isn't applicable.\ For further details of the methods used to generate\ this annotation, see the references\ and the TargetScan\ website.

\ \

Release Notes

\

\ Compared to previous releases, Release 7 uses an improved method to predict\ targeting efficacy (the context++ model, Agarwal et al., 2015), uses 3' UTR\ profiles that indicate the fraction of mRNA containing each site (Nam et al.,\ 2014), and uses updated miRNA families curated from Chiang et al., 2010 and\ Fromm et al., 2015. The previous version released by UCSC was 5.1. For further\ information on previous releases refer to \ TargetScan Releases.\

\ \

Credit

\

\ Thanks to George Bell of\ Bioinformatics and Research Computing at the Whitehead\ Institute for providing this annotation, which was generated in collaboration\ with the labs of David Bartel and Chris Burge.\ Additional information on microRNA target prediction is available on the\ TargetScan website.\

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ or the Data Integrator. For automated analysis, the data may\ be queried from our REST API. Please refer to our\ mailing list archives\ for questions, or our Data Access FAQ for more\ information.\

\ \

\ Data is also freely available on the Target Scan website\ TargetScanHuman V7.2 Data Download.\

\ \

References

\ \

\ Agarwal V, Bell GW, Nam JW, Bartel DP.\ \ Predicting effective microRNA target sites in mammalian mRNAs.\ Elife. 2015 Aug 12;4.\ PMID: 26267216; PMC: PMC4532895\

\ \

\ Garcia DM, Baek D, Shin C, Bell GW, Grimson A, Bartel DP.\ \ Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and\ other microRNAs.\ Nat Struct Mol Biol. 2011 Sep 11;18(10):1139-46.\ PMID: 21909094; PMC: PMC3190056\

\ \

\ Friedman RC, Farh KK, Burge CB, Bartel DP.\ \ Most mammalian mRNAs are conserved targets of microRNAs.\ Genome Res. 2009 Jan;19(1):92-105.\ PMID: 18955434; PMC: PMC2612969\

\ \

\ Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, Bartel DP.\ \ MicroRNA targeting specificity in mammals: determinants beyond seed pairing.\ Mol Cell. 2007 Jul 6;27(1):91-105.\ PMID: 17612493; PMC: PMC3800283\

\ \

\ Lewis BP, Burge CB, Bartel DP.\ \ Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are\ microRNA targets.\ Cell. 2005 Jan 14;120(1):15-20.\ PMID: 15652477\

\ regulation 1 bigDataUrl /gbdb/hg19/targetScan/targetScanSitesV72.bb\ filter.targetScanScore -1\ filterLimits.targetScanScore -1:99\ itemRgb on\ longLabel Predicted microRNA Target Sites from TargetScanHuman 7.2 (March 2018)\ parent targetScanMiRnaSites\ shortLabel TS miRNA v7.2\ track targetScanMiRnaSitesV72\ type bigBed 12 +\ url http://www.targetscan.org/cgi-bin/targetscan/vert_72/view_gene.cgi?gs=$P&taxid=9606&members=$p&showcnc=1\ urlLabel View miRNA target at TargetScan\ visibility pack\ wgEncodeRikenCageViewTssHmm TssHmm bed 3 RNA Subcellular CAGE Localization from ENCODE/RIKEN 3 100 0 0 0 127 127 127 0 0 0 expression 1 configurable off\ longLabel RNA Subcellular CAGE Localization from ENCODE/RIKEN\ parent wgEncodeRikenCage\ shortLabel TssHmm\ track wgEncodeRikenCageViewTssHmm\ view TssHmm\ visibility pack\ wgEncodeUchicagoTfbs UChicago TFBS bed 3 Transcription Factor Binding Sites by Epitope-Tag from ENCODE/UChicago 0 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ This track maps genome-wide human transcription factor binding sites using\ second-generation massively parallel sequencing. This mapping uses expressed\ transcription factors as GFP-tagged fusion proteins after bacterial artificial\ chromosome (BAC) recombineering (recombination-mediated genetic engineering).\

\ \

\ The University of Chicago and Max Planck Institute (Dresden) pipeline generates\ recombineered BACs for the production of cell lines or animals that express fusion\ proteins from epitope-tagged transgenes.\

\ \

Display Conventions and Configuration

\ \

\ This track is a multi-view composite track that contains multiple data types\ (views). For each view, there are multiple subtracks that display\ individually on the browser. Instructions for configuring multi-view tracks\ are here.\

\ \

\ For each cell type, this track contains the following views:\

\
Peaks\
Regions of signal enrichment based on processed data (usually normalized data from pooled replicates).\
Signal\
Density graph (wiggle) of signal enrichment based on aligned read density.\
\

\ \

\ Peaks and signals displayed in this track are the results of pooled replicate\ sequence. Alignment files for each replicate are available for\ download.\

\ \

Methods

\ \

\ Cells were grown according to the approved\ ENCODE cell culture protocols.\

\ \

Recombineering Strategy

\ \

\ To facilitate high-throughput production of the transgenic constructs, the\ program BACFinder (Crowe et al., 2002) automatically selects the\ most suitable BAC clone for any given human gene and generates the sets of\ PCR primers required for tagging and verification (Poser et al.,\ 2008). Recombineering is used for tagging cassettes at either the N or C\ terminus of the protein. The N-terminal cassette has a dual eukaryotic-prokaryotic\ promoter (PGK-gb2) driving a neomycin-kanamycin resistance gene within an\ artificial intron inside the tag coding sequence. The selection cassette is\ flanked by two loxP sites and can be permanently removed by Cre\ Recombinase-mediated excision. The C-terminal cassette contains the sequence\ encoding the tag followed by an internal ribosome entry site (IRES) in front\ of the neomycin resistance gene. In addition, a short bacterial promoter (Gb3)\ drives the expression of the neomycin-kanamycin resistance gene in E. coli.\

\ \

\ The tagging cassettes, containing 50 nucleotides of PCR-introduced homology arms,\ were inserted into the BAC by recombineering, either behind the start codon (for\ the N-terminal tag) or in front of the stop codon (for the C-terminal tag) of the\ gene. E. coli cells that had successfully recombined the cassette were\ selected for kanamycin resistance in liquid culture. Each saturated culture from\ a specific recombineering reaction derived 10-200 independent recombination events.\

\ \

\ Two independent clones were checked for each PCR through the tag insertion point and\ 97% (85/88) yielded a PCR product of the expected size. Most of the clones that failed\ to grow were missing the targeted genomic region. An estimated 10% of the BACs used\ were chimeric, rearranged or wrongly mapped. Thus, initial results indicated that the\ necessary recombineering steps could be carried out with high fidelity.\

\ \

\ The White lab produced all epitope tagged transcription and chromatin factor BACs,\ as well as the genome-wide ChIP data and analysis. An application of this approach\ to the analysis of closely related paralogs (RARa and RARg) yielded transcription\ factors, chromatin factors, cell lines, ChIP-chip data and ChIP-seq data (Hua\ et al., 2009). Such paralogous transcription factors often cannot otherwise\ be distinguished by antibodies.\

\ \

Sample Preparation

\ \

\ ChIP DNA from samples were sheared to approximately 800 bp using a nebulizer. The ends of the DNA\ were polished and two unique adapters were ligated to the fragments. Ligated fragments of\ 150-200 bp were isolated by gel extraction and amplified using limited cycles of PCR.\

\ \

Sequencing System

\ \

\ Illumina GAIIx and HySeq next-generation sequencing were used to produce all ChIP-seq data.\

\ \

Processing and Analysis Software

\ \

\ Raw sequencing reads were aligned using\ Bowtie 0.12.5\ (Langmead et al., 2009). The "-m 1" parameter was applied to suppress\ alignments mapping more than once in the genome. Reads were aligned to the UCSC hg19 assembly.\ Wiggle format signal files were generated with\ SPP 2.7.1\ (Kharchenko et al., 2008) for R 2.7.1.\ MACS 1.3.7\ was used to call peaks. The MACS parameters used varied by experiment.\

\ \

\ The White lab used goat anti-GFP antibody to perform ChIP in untagged K562 cells as a background control.\ The test IP was performed in the same manner as the background control. Results were expressed as values\ of the test normalized to the background.\

\ \

Credits

\ \

\ These data and annotations were created by a collaboration of University of Chicago and Argonne National Laboratory:\

\ \ \ \

References

\ \

\ Crowe ML, Rana D, Fraser F, Bancroft I, Trick M.\ \ BACFinder: genomic localisation of large insert genomic clones based on restriction fingerprinting.\ Nucleic Acids Res. 2002 Nov 1;30(21):e118.\

\ \

\ Hua S, Kittler R, White KP.\ \ Genomic antagonism between retinoic acid and estrogen signaling in breast cancer.\ Cell. 2009 Jun 26;137(7):1259-71.\

\ \

\ Kharchenko PV, Tolstorukov MY, Park PJ.\ \ Design and analysis of ChIP-seq experiments for DNA-binding proteins.\ Nat Biotechnol. 2008 Dec;26(12):1351-9.\

\ \

\ Langmead B, Trapnell C, Pop M, Salzberg SL.\ \ Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.\ Genome Biol. 2009;10(3):R25.\

\ \

\ Poser I, Sarov M, Hutchins JR, Hériché JK, Toyoda Y, Pozniakovsky A, Weigl D, Nitzsche A, Hegemann B, Bird AW et al.\ \ BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals.\ Nat Methods. 2008 May;5(5):409-15.\

\ \

Data Release Policy

\ \

\ Data users may freely use ENCODE data, but may not, without prior consent,\ submit publications that use an unpublished ENCODE dataset until nine months\ following the release of the dataset. This date is listed in the Restricted Until\ column, above. The full data release policy for ENCODE is available\ here.\

\ regulation 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell factor=antibody\ dimensions dimensionX=cellType dimensionY=factor\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line antibody=Antibody
Target control=Control replicate=Rep view=View dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ group regulation\ longLabel Transcription Factor Binding Sites by Epitope-Tag from ENCODE/UChicago\ noInherit on\ priority 0\ shortLabel UChicago TFBS\ sortOrder cellType=+ factor=+ view=+\ subGroup1 view Views Peaks=Peaks Signal=Signal\ subGroup2 cellType Cell_Line K562=K562 (Tier_1)\ subGroup3 factor Factor HDAC8=HDAC8 NR4A1=NR4A1 FOS=FOS JunB=JunB JunD=JunD GATA2=GATA2\ subGroup4 control Control ControlGATA2=Control_eGFP-GATA2 ControlFOS=Control_eGFP-FOS Control=Control ControlHDAC8=Control_eGFP-HDAC8 ControlNR4A1=Control_eGFP-NR4A1 ControlJunD=Control_eGFP-JunD ControlJunB=Control_eGFP-JunB\ subGroup5 rep Replicate rep1=1 rep2=2 repInput=Input repPOOLED=Pooled\ superTrack wgEncodeTfBindingSuper hide\ track wgEncodeUchicagoTfbs\ type bed 3\ knownAlt UCSC Alt Events bed 6 . Alternative Splicing, Alternative Promoter and Similar Events in UCSC Genes 0 100 90 0 150 172 127 202 0 0 0

Description

\

This track shows various types of alternative splicing and other\ events that result in more than a single transcript from the same\ gene. The label by an item describes the type of event. The events are:

\
    \
  • Alternate Promoter (altPromoter) - Transcription starts at multiple places. The altPromoter extends from 100 bases before to 50 bases after transcription start.\
  • Alternate Finish Site (altFinish) - Transcription ends at multiple places.\
  • Cassette Exon (cassetteExon) - Exon is present in some transcripts but \ not others. These are found by looking for exons that overlap an intron in the \ same transcript.\
  • Retained Intron (retainedIntron) - Introns are spliced out in some \ transcripts but not others. In some cases, particularly when the intron is near \ the 3' end, this can reflect an incompletely processed transcript rather than \ a true alt-splicing event.\
  • Overlapping Exon (bleedingExon) - Initial or terminal exons overlap \ in an intron in another transcript. These often are associated with incompletely \ processed transcripts.\
  • Alternate 3' End (altThreePrime) - Variations on the 3' end of an intron.\
  • Alternate 5' End (altFivePrime) - Variations on the 5' end of an intron.\
  • Intron Ends have AT/AC (atacIntron) - An intron with AT/AC ends rather than \ the usual GT/AG. These are associated with the minor spliceosome.\
  • Strange Intron Ends (strangeSplice) - An intron with ends that are not \ GT/AG, GC/AG, or AT/AC. These are usually artifacts of some sort due to \ sequencing error or polymorphism.\
\ \

Credits

\

This track is based on an analysis by the txgAnalyse program of splicing graphs\ produced by the txGraph program. Both of these programs were written by Jim\ Kent at UCSC.

\ genes 1 color 90,0,150\ group genes\ longLabel Alternative Splicing, Alternative Promoter and Similar Events in UCSC Genes\ noScoreFilter .\ shortLabel UCSC Alt Events\ track knownAlt\ type bed 6 .\ visibility hide\ ucsfBrainMethyl UCSF Brain Methyl bed 3 UCSF Brain DNA Methylation 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ Genome wide methylation (MeDIP-seq and MRE-seq), histone H3 lysine 4 trimethylation \ (H3K4me3) and gene expression (RNA-seq and RNA-seq (SMART)) data were generated from \ postmortem human frontal cortex gray matter of a 57 year-old male. This was done\ to investigate the role that intragenic, tissue-specific CpG island methylation \ plays in controlling gene expression \ (Maunakea, et al. 2010).\

\ \

Display Conventions and Configuration

\

\ This track is a multi-view composite track that contains multiple data types\ (views). For each view, there are multiple subtracks that\ display individually on the browser. Instructions for configuring multi-view\ tracks are here.\ The following views are in this track:\

\
\
Raw Singal\
Density graph (wiggle) of signal enrichment.\
CpG score\
DNA methylation score on CpG sites.\
\ \

Methods

\

\ DNA, RNA and native chromatin were extracted using standard methods; assay specific \ methods are described below. MRE-seq, MeDIP-seq, H3K4me3 ChIP-seq, RNA-seq and RNA-seq \ (SMART) libraries were sequenced using an Illumina Genome Analyzer II. Sequencing reads \ are available through the NCBI SRA \ (study accession number SRP002318).\

\ \

MeDIP-seq (Methylated DNA immunoprecipitation and sequencing)

\

\ MeDIP-seq uses immunoprecipitation to extract the methylated fraction of the genome. \ Purified DNA was first sheared and processed following the Illumina Genomic DNA Library \ Kit protocol. These DNA fragments were then immunoprecipitated using an antibody raised \ against 5-methylcytosine, the methylated form of cytosine, before constructing a \ library, which was sequenced and mapped to the genome.\

\ \

MRE-seq (Methyl-sensitive restriction enzyme digest and sequencing)

\

\ MRE-seq identifies unmethylated CpG sites by sequencing size-selected fragments from \ parallel DNA digestions with the MREs HpaII, Hin6I, and AciI. Since these enzymes \ require unmethylated CpG sites within their recognition sequences to cut DNA, \ identifying the end of each fragment generated allows inference of a single \ unmethylated cytosine. The 3 digests were combined and size-selected by gel \ electrophoresis to enrich for unmethylated CpG sites in close proximity. A library was \ constructed and sequenced; the sequence reads were then mapped to the genome with the \ additional requirement that they map to a known MRE recognition site.\

\ \

H3K4me3 ChIP-seq (Histone H3 lysine 4 trimethylation chromatin immunoprecipitation \ and sequencing)

\

\ Chromatin immunoprecipitation was performed to enrich for histone H3 modified at lysine \ position 4 with trimethylation (H3K4me3), as this histone modification is associated \ with promoters. A ChIP-seq library was constructed as described in Robertson, et al. \ 2007, sequenced and mapped to the genome.\

\ \

RNA-seq and RNA-seq SMART (RNA sequencing and SMART-tagged RNA sequencing)

\

\ Sheared RNA was used to synthesize full-length single-stranded cDNAs as described by \ Morin, et al. 2008. A library was constructed and sequenced, and sequence reads are \ mapped to the genome. The 5' end of transcripts were tagged with a sequence tag, \ called a "SMART tag", while making cDNA library for sequencing. SMART tagged \ reads were used to infer transcription initiation, while all reads together are used to \ infer gene expression level.\

\ \

Verification

\ \

MeDIP-seq

\

\ Each post-amplification library was QC'd for quantity, quality and size \ distribution by spectrophotometry and Agilent DNA Bioanalyzer analysis. Four \ independent PCR reactions were performed to confirm enrichment for methylated and \ de-enrichment for unmethylated sequences, compared to input sonicated DNA. Visual \ inspection of extended coverage browser tracks confirmed expectations: lack of MeDIP \ signal in most 5' CpG island promoters and in regions devoid of CpG sites, as well \ as high MeDIP signal at known methylated sites (i.e. some imprinted regions).\

\ \

MRE-seq

\

\ Each post-amplification library was QC'd for quantity, quality and size \ distribution by Nanodrop spectrophotometry and Agilent DNA Bioanalyzer analysis. Prior \ to high-throughput sequencing, a portion of each library was cloned into a sequencing \ vector and ~24 individual clones were Sanger sequenced to confirm the presence of \ MRE sites at the ends of each insert. Illumina sequencing reads were filtered to only \ include those that map to MRE sites in the reference. MRE reads occured frequently in \ 5' CpG islands, which are often unmethylated and are enriched for the MRE \ recognition sequences relative to rest of the genome.\

\ \

H3K4me3 ChIP-seq

\

\ Each post-amplification library was examined for quantity, quality and size \ distribution by Nanodrop spectrophotometry, Qubit fluoremetry and Agilent DNA \ Bioanalyzer. Fold H3K4me3 enrichment was confirmed by comparison to non-specific \ rabbit IgG enrichment. Visual inspection of the browser track of called peaks confirmed \ enrichment at a subset of annotated promoters.\

\ \

RNA-seq and RNA-seq (SMART)

\

\ Each post-amplification library was examined for quantity, quality and size \ distribution by Nanodrop spectrophotometry, Qubit fluoremetry and Agilent DNA \ Bioanalyzer. Visual inspection of the browser track of extended reads confirmed \ enrichment at annotated exons and UTRs. SMART-tagged reads were enriched at known \ promoters, as expected. \

\ \

Credits

\ \

\ UCSF: Joseph Costello, Raman Nagarajan, Shaun Fouse, Brett Johnson, Chibo Hong, Ksenya \ Shchors, Vivi M. Heine, David H. Rowitch\

\

\ Genome Sciences Centre, BC Cancer Agency: Mikhail Bilenky, Cletus D'Souza, Cydney \ Nielsen, Yongjun Zhao, Allen Delaney, Richard Varhol, Nina Thiessen, Steven S.J. Jones, \ Marco A. Marra, Martin Hirst\

\

\ Washington University, St. Louis, MO: Ting Wang, Xiaoyun Xing, Chris Fiore, Maximiliaan \ Schillebeeckx\

\

\ UCSC: Tracy J. Ballinger, David Haussler\

\

\ McGill: Gustavo Turecki\

\ \

References

\

\ Maunakea AK, Nagarajan RP, Bilenky M, Ballinger TJ, D'Souza C, Fouse SD, Johnson BE, Hong C, Nielsen\ C, Zhao Y et al.\ \ Conserved role of intragenic DNA methylation in regulating alternative promoters.\ Nature. 2010 Jul 8;466(7303):253-7.\ PMID: 20613842\

\ \

\ Morin R, Bainbridge M, Fejes A, Hirst M, Krzywinski M, Pugh T, McDonald H, Varhol R, Jones S, Marra\ M.\ \ Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read\ sequencing.\ Biotechniques. 2008 Jul;45(1):81-94.\ PMID: 18611170\

\ \

\ Robertson G, Hirst M, Bainbridge M, Bilenky M, Zhao Y, Zeng T, Euskirchen G, Bernier B, Varhol R,\ Delaney A et al.\ \ Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively\ parallel sequencing.\ Nat Methods. 2007 Aug;4(8):651-7.\ PMID: 17558387\

\ \ regulation 1 compositeTrack on\ dimensions \ dividers assayType\ dragAndDrop subTracks\ group regulation\ longLabel UCSF Brain DNA Methylation\ shortLabel UCSF Brain Methyl\ sortOrder assayType=+ view=+\ subGroup1 view Views COV=Raw_Signal CG=CpG_score\ subGroup2 sampleType Sample_Type Brain=Brain\ subGroup3 assayType Assay_Type MRE1=MRE-seq MRE2=MRE-seq MRE3=MRE-seq MeDIP1=MeDIP-seq MeDIP2=MeDIP-seq H3K4me3=H3K4me3_ChIP-seq RNA1=RNA-seq RNA2=RNA-seq_(SMART)\ track ucsfBrainMethyl\ type bed 3\ visibility hide\ wgEncodeUmassDekker5C UMass 5C bed 12 + Chromatin Interactions by 5C from ENCODE/Dekker Univ. Mass. 1 100 0 0 0 127 127 127 0 0 0

Description

\ \

\ This track contains chromatin interaction data generated using the 5C (Chromatin Conformation Capture Carbon Copy)\ method by the ENCODE group (Dekker Lab) located at the University of Massachusetts, Worcester, MA.\ This track shows the significant looping interactions between transcriptional start sites (TSS)\ and distal regulatory elements in the context of the 44 ENCODE pilot regions spanning 1% of the human genome.\

\ \

\ Although the DNA is a linear sequence, the chromatin, which is packed and organized inside the nucleus, \ does not function linearly. This is most clearly illustrated by the fact that genes are\ often regulated by elements that are located hundreds of kilobases away in the linear genome.\ Imaging techniques have shown that regulatory elements can act over large genomic distances \ by engaging in direct physical interactions with target genes, resulting in the formation of chromatin loops.\ Based on these observations, we have envisaged that the spatial organization of the genome resembles a\ three-dimensional network that is driven by physical associations between genes and regulatory elements,\ both in cis (within the same chromosome) and in trans (between different chromosomes) (Dekker, 2006).\

\ \

\ Apart from imaging technology which is labor intensive and low-throughput, \ long-range chromatin looping interactions can be detected using the Chromosome Conformation Capture (3C)\ technology (Dekker et al., 2002). The 3C method employs formaldehyde cross-linking to covalently link\ interacting chromatin segments in intact cells. Cells are subsequently lysed and chromatin is\ digested with a restriction enzyme of choice. The digested fragments are then ligated under \ dilute conditions to facilitate intramolecular ligation. The result is a genome-wide \ interaction library of ligation products corresponding to all possible chromatin interactions. \ Specific ligation products can then be detected by PCR using specific primer pairs. \

\ \

\ The 5C method was developed to dramatically increase 3C throughput (Dostie et al., 2006; Dostie and Dekker, 2007).\ The 5C method greatly increases the scale of chromatin interaction detection by replacing the PCR detection step of 3C with\ ligation-mediated amplification (LMA). LMA is advantageous due to a much higher level of multiplexing by using\ thousands of primers in a single reaction to detect millions of chromatin interactions (ligation junctions) in parallel. \ The LMA step effectively "copies" 3C ligation products into much smaller 5C ligation products that precisely correspond to ligation\ junctions formed during the 3C procedure. The products of the multiplexed LMA reaction constitute the 5C library.\ The composition of the 5C library is determined using high-throughput DNA sequencing.\

\ \

Display Conventions and Configuration

\ \

\ In the graphical display, the significant looping interactions in cis (i.e., from the same ENCODE pilot regions) \ are represented by blocks and connected by a horizontal line. Users can opt to filter the significant looping interactions \ according to their respective z-score (scaled to 0-1000) by using the built-in genome browser display score threshold.\

\ \

\ Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.\

\ \

File Conventions

\ \

\ The following types of data are available for download:\

\
\
Matrix
\
\ Interaction files are in a matrix format indicating interaction strength\ with "reverse primer name | genome version | reverse HindIII fragment coordinates" in\ the top row and "forward primer name | genome version | forward primer fragment coordinates"\ in the first column. The number of sequences mapped to each interaction fills the matrix.\ \ In order to understand the Matrix data, you must download the associated primer data file.\ \
\
Primer
\
\ Primer data files include the sequences of the primers used in the experiments.\ These files are available for download in the supplemental materials.\
\
Raw Data
\
\ Sequencing files provided in fastQ format.
\
\ \

Methods

\ \

\ The aim of the pilot study was to generate a "connectivity map" between transcription start sites (TSS) and distal \ regulatory elements within the 44 ENCODE PILOT regions. \

\ \

\ In the current scheme, 5C primers were designed for all HindIII restriction fragments. \ Reverse primers were designed on fragments containing the TSS of annotated genes. Forward primers were designed on all other fragments. \ This design allowed for the interrogation of all TSS with all other restriction fragments, thus \ generating an interaction map between TSS and regulatory elements. For gene desert ENCODE pilot regions (for example ENr313), \ an altered scheme of forward and reverse primers was designed. \

\ \

\ Primers were selected for relative uniqueness using a custom 15-mer frequency table and BLAST. \ A custom hexamer barcode was added to each primer to ensure the sequence was unique relative to the primer pool being used. \ Primers were also selected for the appropriate melting temperature and GC-content and a universal tail sequence for amplification. \

\ \

\ The 44 ENCODE regions were analyzed in two groups using two separate 5C primer pools.\ The first group (ENm) contained the manually-picked ENCODE regions, ENm001-014 and ENr313. \ The second group (ENr) contained the 30 randomly-picked ENCODE regions. \ The two 5C primer pools were made by pooling 5C primers for interrogating long-range interactions in the \ two groups of ENCODE regions. The primer pool for the ENm group contained a total \ of 3,150 primers (476 reverse 5C primers and 2674 forward 5C primers). This primer pool allowed interrogation \ of a total of 1,272,824 interactions. Of these, 83,427 interactions were between fragments that were \ both located in the same ENCODE region. This primer pool for the ENr group contained a total of \ 3,152 primers (505 reverse 5C primers and 2647 forward 5C primers). \ This primer pool allowed interrogation of a total of 1,336,735 interactions. \ Of these, 34,859 interactions were between fragments that were both located in the same ENCODE region.\ In total, 981 reverse primers and 5,321 forward primers were designed (corresponding to ~77.1% (6,302/8,174) \ of all HindIII fragments in the 44 ENCODE regions).\

\ \

\ Currently, data for two biological replicates have been generated for \ ENCODE Tier I (GM12878 and K562), Tier II (HeLa-S3), and H1 human embryonic stem cells (H1-hESC), \ spanning 14 ENCODE manual regions along with one random region (ENr313) as well as \ 30 random regions separately using high-throughput paired-end sequencing in the \ Illumina GA2 platform. The looping interactions, which are detected in both the biological replicates, are considered significant.\

\ \

Release Notes

\

\ This is Release 2 (July 2012). There is no new data for this release all new data has the version number appended to the name (e.g., V2). Peak files have been reanalyzed and more complete Raw Data files have been submitted.\

\ \

Credits

\ \

\ All provided data were produced by the Dekker Lab at UMass Medical School, Worcester, MA. \ The following personnel contributed to the project (contacts):\

\ \

\ Additional information and/or vizualization tools can be found on the\ Dekker Lab website.\

\ \ \

References

\ \

\ Baù D, Sanyal A, Lajoie BR, Capriotti E, Byron M, Lawrence JB, Dekker J, Marti-Renom MA.\ \ The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules.\ Nat Struct Mol Biol. 2011 Jan;18(1):107-14.\

\ \

\ Dekker J.\ \ The three 'C' s of chromosome conformation capture: controls, controls, controls.\ Nat. Methods. 2006;3(1):17-21.\

\ \

\ Dekker J, Rippe K, Dekker M, Kleckner N.\ \ Capturing chromosome conformation.\ Science. 2002 Feb 15;295(5558):1306-11.\

\ \

\ Dostie J, Dekker J.\ \ Mapping networks of physical interactions between genomic elements using 5C technology.\ Nature Protocols. 2007;2(4):988-1002.\

\ \

\ Dostie J, Richmond TA, Arnaout RA, Selzer RR, Lee WL, Honan TA, Rubio ED, Krumm A, Lamb J, Nusbaum C\ et al.\ \ Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping\ interactions between genomic elements.\ Genome Res. 2006 Oct;16(10):1299-309.\

\ \

\ Lajoie BR, van Berkum NL, Sanyal A, Dekker J.\ \ My5C: web tools for chromosome conformation capture studies.\ Nat. Methods. 2009;6(1):690-91.\

\ \

Data Release Policy

\ \

Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

\ regulation 1 boxedCfg on\ canPack On\ compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell region=region\ dimensions dimensionX=cellType\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line region=Region replicate=Replicate view=View dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
Until\ group regulation\ html wgEncodeUmassDekker5C.release2\ longLabel Chromatin Interactions by 5C from ENCODE/Dekker Univ. Mass.\ noInherit on\ priority 0\ scoreFilter 0\ shortLabel UMass 5C\ sortOrder cellType=+\ subGroup1 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2HELAS3=HeLa-S3 (Tier_2)\ subGroup2 region Region NONE=None\ superTrack wgEncodeChromSuper dense\ track wgEncodeUmassDekker5C\ type bed 12 +\ uMassBrainHistone UMMS Brain Hist bed 3 Brain Histone H3K4me3 ChIP-Seq from Univ. Mass. Medical School (Akbarian/Weng) 0 100 0 0 0 127 127 127 0 0 0

Description

\

\ This track displays maps of histone H3K4me3 in human brain,\ identified by chromatin immunoprecipitation followed by high-throughput\ sequencing (ChIP-Seq).\ Measurements were made in neuronal and non-neuronal nuclei collected from\ prefrontal cortex (PFC) of 11 individuals ranging in age from 0.5 to 69 years.

\

\ ChIP-Seq begins by using formaldehyde to cross-link\ histones and other DNA-associated proteins to genomic DNA. The cross-linked\ chromatin is subsequently extracted, mechanically sheared, and\ immunoprecipitated using specific antibodies. After reversal of cross-links,\ the immunoprecipitated DNA is sequenced and mapped to the human reference\ genome. The relative enrichment of each antibody-target (epitope) across\ the genome is inferred from the density of mapped fragments.

\

\ \

Methods

\

\ Human prefrontal cortex samples used in this study were obtained from the\ Brain and Tissue Bank for Developmental Disorders, University of Maryland\ and a brain bank at the University of California, Irvine. Nuclei extraction,\ chromatin immunoprecipitation and sequencing were carried out as described\ in Cheung I, et al. (2010). Sequencing was performed on an Illumina\ Genome Analyzer (GA II).

\

\ The length of sequence reads was 36 bp. Mapping was performed using \ Bowtie (version 0.11.3, \ Langmead B, Trapnell C, Pop M, Salzberg SL (2009)) allowing up to one\ mismatch to map all sequence reads to the gender appropriate human genome hg18 (NCBI36), and\ 67-87% of the reads in the neuronal samples mapped to one unique\ location in the genome. The mapped reads were analyzed using the MACS software\ package (version 1.3.5, Zhang Y, et al. (2008)) to identify peaks, with bw = 230 bp, as defined\ experimentally by PCR, tSize = 36 bp, and other parameters set at default.\ The scored peaks were then lifted to the hg19 (GRCh37) assembly. \ Signal tracks were generated directly from a remapping of the reads to hg19.\

\ \

Verification

\

\ Experimental testing was performed on a subset of the peaks that were \ positioned more than\ 10 kb from annotated genes for RNA expression in PFC neurons by qRT-PCR and\ in situ hybridization. These results suggest that H3K4me3 mapping can serve as a\ guide to uncover potentially hundreds of unannotated novel and cell-specific\ transcripts in the brain.

\ \

Credits

\

\ Chromatin immunoprecipitation experiments were carried out by Iris Cheung,\ Yan Jiang and Schahram Akbarian; analyses were performed by Hennady Shulha,\ Jie Wang and Zhiping Weng at the University of Massachusetts Medical School.

\ \

References

\

\ Cheung I, Shulha HP, Jiang Y, Matevossian A, Wang J, Weng Z, Akbarian S.\ Developmental regulation and individual differences of neuronal H3K4me3 epigenomes in the prefrontal cortex.\ Proc Natl Acad Sci U S A. 2010 May 11;107(19):8824-9.

\

\ Langmead B, Trapnell C, Pop M, Salzberg SL.\ \ Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. \ Genome Biol. 2009;10(3):R25.

\

\ Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS.\ \ Model-based analysis of ChIP-Seq (MACS). \ Genome Biol. 2008;9(9):R137.

\ \ regulation 1 compositeTrack on\ dimensionAchecked male,female,mixed\ dimensions dimensionX=age dimensionY=cellType dimA=sex\ dragAndDrop subTracks\ group regulation\ longLabel Brain Histone H3K4me3 ChIP-Seq from Univ. Mass. Medical School (Akbarian/Weng)\ noInherit on\ shortLabel UMMS Brain Hist\ sortOrder cellType=- donor=+ age=+ sex=+ view=+\ subGroup1 view Views Peaks=Peaks Signal=Signal\ subGroup2 cellType Cell_Type norm=Neuronal neun=Non-neuronal\ subGroup3 donor Donor a_pooled=Pooled b_1=1 c_2=2 d_3=3 e_4=4 f_5=5 g_6=6 h_7=7 i_8=8 j_9=9 k_10=10 l_11=11\ subGroup4 sex Gender female=Female male=Male mixed=Mixed\ subGroup5 age Age a_infant=Infant b_young=Young c_old=Old d_all=All\ track uMassBrainHistone\ type bed 3\ visibility hide\ visibilityViewDefaults Peaks=pack+ Signal=full\ wgEncodeOpenChromFaire UNC FAIRE bed 3 Open Chromatin by FAIRE from ENCODE/OpenChrom(UNC Chapel Hill) 1 100 0 0 0 127 127 127 1 0 0

Description

\

These tracks display Formaldehyde-Assisted Isolation of Regulatory Elements\ (FAIRE) evidence as part of the four Open Chromatin track sets (see below).\ FAIRE is a method to isolate and identify nucleosome-depleted regions of\ the genome. FAIRE was initially discovered in yeast and subsequently shown to\ identify active regulatory elements in human cells (Giresi et al.,\ 2007). Similar to DNaseI HS, FAIRE appears to identify functional regulatory\ elements that include promoters, enhancers, silencers, insulators, locus\ control regions and novel elements.\

\

Together with DNaseI HS and ChIP-seq experiments, these tracks display the\ locations of active regulatory elements identified as open chromatin in\ multiple cell types\ from the Duke, UNC-Chapel Hill, UT-Austin, and EBI ENCODE group.\ Within this project, open chromatin was identified using two\ independent and complementary methods: DNaseI hypersensitivity (HS)\ and these FAIRE assays,\ combined with chromatin immunoprecipitation (ChIP) for select\ regulatory factors. DNaseI HS and FAIRE provide assay\ cross-validation with commonly identified regions delineating the\ highest confidence areas of open chromatin. ChIP assays provide\ functional validation and preliminary annotation of a subset of\ open chromatin sites. Each method employed Illumina (formerly Solexa)\ sequencing by synthesis as the detection platform.\ The Tier 1 and Tier 2 cell types were additionally verified by a\ second platform, high-resolution 1% ENCODE tiled microarrays supplied by NimbleGen.\

\

Other Open Chromatin track sets:\

    \
  • Data for the DNase experiments can be found in\ Duke DNaseI HS.\
  • Data for the ChIP experiments can be found in\ UTA TFBS.\
  • A synthesis of all the open chromatin assays for select cell lines can\ be found in\ Open Chrom Synth.\
\ \

Display Conventions and Configuration

\

This track is a multi-view composite track that contains a single data type\ with multiple levels of annotation (views). For each view, there are\ multiple subtracks representing different cell types that display individually\ on the browser. Instructions for configuring multi-view tracks are\ here.\ Chromatin data displayed here represents a continuum of signal intensities.\ The Leib lab recommends setting the "Data view scaling: auto-scale"\ option when viewing signal data in full mode to see the full dynamic\ range of the data. Note that in regions that do not have open chromatin sites,\ autoscale will rescale the data and inflate the background signal, making the\ regions appear noisy. Changing back to fixed scale will alleviate this issue.\ In general, for each experiment in each of the cell types, the UNC FAIRE tracks\ contain the following views:\

\
Peaks
\
Peaks are regions of enriched signal in FAIRE experiments.\ Peaks were called based on signals created using F-Seq, a software program developed\ at Duke (Boyle et al., 2008b). Significant regions were determined\ by fitting the data to a gamma distribution to calculate p-values.\ Contiguous regions where p-values were below a 0.05/0.01 threshold were\ considered significant. The solid vertical line in the peak represents the\ point with highest signal.
\

\

F-Seq Density Signal
\
F-Seq Density Signal is a graph (wiggle) of signal enrichment calculated using F-Seq for the combined set of sequences from all replicates.\ F-Seq employs Parzen kernel density estimation to create base pair\ scores (Boyle et al., 2008b). This method does not look at fixed-length\ windows, but rather weights contributions of nearby sequences in proportion to\ their distance from that base. It only considers sequences aligned four or less\ times in the genome, and uses an alignability background model to try to correct\ for regions where sequences cannot be aligned. A model based on control input data was also used for each cell type to try to correct for amplifications and deletions, especially important for cells with an abnormal karyotype.
\

\

Base Overlap Signal
\
Base Overlap Signal is an alternative version of the\ F-Seq Density Signal track annotation that provides a higher resolution view of the raw sequence data.\ This track also includes the combined set of\ sequences from all replicates. For each sequence, the aligned read is\ extended 5 bp in both directions from its 5' aligned end where DNase cut\ the DNA. The score at each base pair represents the number of\ extended fragments that overlap the base pair.
\
\

\

\ Tracks displayed in this track are the results of pooled replicates. The raw\ sequence and alignment files for each replicate are available for\ download.\

\

Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

\ \ \

Methods

\

Cells were grown according to the approved\ ENCODE cell culture protocols.\

\

FAIRE was performed (Giresi et al., 2007) by cross-linking proteins\ to DNA using 1% formaldehyde solution, and the complex was sheared using\ sonication. Phenol/chloroform extractions were performed to remove DNA\ fragments cross-linked to protein. The DNA recovered in the aqueous phase was\ sequenced using an Illumina (Solexa) sequencing system. FAIRE-seq data for\ Tier 1 and Tier 2 cell lines were verified by comparing multiple independent\ growths (replicates) and determining the reproducibility of the data. For some\ cell types additional verification was performed using the same material, but\ hybridized to NimbleGen Human ENCODE tiling arrays (1% of the genome) along\ with the input DNA as reference (FAIRE-chip). A more detailed protocol is available\ here and in the references below\ (Giresi et al., 2009).\

\

DNA fragments isolated by FAIRE are 100-200 bp in length, with the average length\ being 134 bp. Sequences from each experiment were aligned to the genome using\ Burrows-Wheeler Aligner (BWA) (Li et al., 2010) for the NCBI 36 (hg19) assembly.\

The command used for these alignments was:
\
> bwa aln -t 8 genome.fa s_1.sequence.txt.bfq > s_1.sequence.txt.sai
\ Where genome.fa is the whole genome sequence and s_1.sequence.txt.bfq is one lane\ of sequences converted into the required bfq format.
\

\

Sequences from multiple lanes\ are combined for a single replicate using the bwa samse command, and converted\ in the sam/bam format using SAMtools.\

\

Only those that aligned to four or fewer locations were retained. Other sequences\ were also filtered based on their alignment to problematic regions\ (such as satellites and rRNA genes - see\ supplemental materials).\ The mappings of these short reads to the genome are available for\ download.\

\

The resulting digital signal was converted to a continuous wiggle track using\ F-Seq that employs Parzen kernel density estimation to create base pair scores\ (Boyle et al., 2008b). Input data has been generated for several\ cell lines. These are used directly to create a control/background model used\ for F-Seq when generating signal annotations for these cell lines.\ These models are meant to correct for sequencing biases, alignment artifacts,\ and copy number changes in these cell lines. Input data is not being generated\ directly for other cell lines. For cell lines for which there is\ no input experiment available, the peaks were generated using the control\ of generic_male or generic_female, as an attempt to create a general\ background based on input data from several cell types. These files\ are in "iff" format, which is used when calling peaks with\ F-seq software, and can be downloaded from the\ production lab directly\ from under the section titled "Copy number / karyotype correction."\ Using a general background model derived from the available Input data sets provided corrections for\ sequencing biases and alignment artifacts, but will not correct for cell-type-specific copy number changes.\

The exact command used for this step is:
\
> fseq -l 800 -v -b <bff files> -p <iff files> aligments.bed
\ Where the (bff files) are the background files based on alignability, the\ (iff files) are the background files based on the input experiments,\ and alignments.bed are a bed file of filtered sequence alignments.
\

\

Discrete FAIRE sites (peaks) were identified from FAIRE-seq F-seq\ density signal. Significant regions were determined by fitting the\ data to a gamma distribution to calculate p-values. Contiguous regions\ where p-values were below a 0.05/0.01 threshold were considered significant.\

\

Data from the high-resolution 1% ENCODE tiled microarrays supplied by\ NimbleGen were normalized using the Tukey biweight normalization, and peaks\ were called using ChIPOTle (Buck et al., 2005) at multiple levels\ of significance. Regions matched on size to these peaks that were devoid of\ any significant signal were also created as a null model. These data were used\ for additional verification of Tier 1 and Tier 2 cell lines by ROC analysis.\ Files labeled Validation view containing this data are available for\ download. \

\ \

Release Notes

\

\ Release 2 (September 2012) of this track consists of 12 new experiments, including 11 new cell lines. \

  • A synthesis of open chromatin evidence from the three assay types was\ compiled for Tier 1 and 2 cell lines can be found in:\ Open Chromatin Synthesis.\
  • Enhancer and Insulator Functional assays: A subset of DNase and FAIRE\ regions were cloned into functional tissue culture reporter assays to test for\ enhancer and insulator activity. Coordinates and results from these\ experiments can be found\ here. \

    \ \

    Credits

    \

    \ These data and annotations were created by a collaboration of multiple\ institutions (contact:\ \ Terry Furey):\ \

    \

    \

    \ We thank NHGRI for ENCODE funding support.\

    \ \

    References

    \ \

    \ Bhinge AA, Kim J, Euskirchen GM, Snyder M, Iyer VR.\ \ Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE).\ Genome Res. 2007 Jun;17(6):910-6.\

    \ \

    \ Boyle AP, Davis S, Shulha HP, Meltzer P, Margulies EH, Weng Z, Furey TS, Crawford GE.\ \ High-resolution mapping and characterization of open chromatin across the genome.\ Cell. 2008 Jan 25;132(2):311-22.\

    \ \

    \ Boyle AP, Guinney J, Crawford GE, Furey TS.\ \ F-Seq: a feature density estimator for high-throughput sequence tags.\ Bioinformatics. 2008 Nov 1;24(21):2537-8.\

    \ \

    \ Buck MJ, Nobel AB, Lieb JD.\ \ ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data.\ Genome Biol. 2005;6(11):R97.\

    \ \

    \ Crawford GE, Davis S, Scacheri PC, Renaud G, Halawi MJ, Erdos MR, Green R, Meltzer PS, Wolfsberg TG,\ Collins FS.\ \ DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled\ microarrays.\ Nat Methods. 2006 Jul;3(7):503-9.\

    \ \

    \ Crawford GE, Holt IE, Whittle J, Webb BD, Tai D, Davis S, Margulies EH, Chen Y, Bernat JA, Ginsburg\ D et al.\ \ Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing\ (MPSS).\ Genome Res. 2006 Jan;16(1):123-31.\

    \ \

    \ ENCODE Project Consortium, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR,\ Margulies EH, Weng Z, Snyder M, Dermitzakis ET et al.\ \ Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot\ project.\ Nature. 2007 Jun 14;447(7146):799-816.\

    \ \

    \ Giresi PG, Kim J, McDaniell RM, Iyer VR, Lieb JD.\ \ FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements\ from human chromatin.\ Genome Res. 2007 Jun;17(6):877-85.\

    \ \

    \ Giresi PG, Lieb JD.\ \ Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted\ Isolation of Regulatory Elements).\ Methods. 2009 Jul;48(3):233-9.\

    \ \

    \ Li H, Ruan J, Durbin R.\ \ Mapping short DNA sequencing reads and calling variants using mapping quality scores.\ Genome Res. 2008 Nov;18(11):1851-8.\

    \ \

    \ Song L, Crawford GE.\ \ DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome\ from mammalian cells.\ Cold Spring Harb Protoc. 2010 Feb;2010(2):pdb.prot5384.\

    \ \ \

    Data Release Policy

    \ Data users may freely use ENCODE data, but may not, without prior consent,\ submit publications that use an unpublished ENCODE dataset until nine months\ following the release of the dataset. This date is listed in the Restricted\ Until column, above. The\ full data release policy for ENCODE is available here.\ regulation 1 compositeTrack on\ configurable on\ controlledVocabulary encode/cv.ra cellType=cell treatment=treatment\ dataVersion ENCODE July 2012 Freeze\ dimensions dimensionY=cellType dimensionX=treatment\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line treatment=Treatment view=View controlId=Control replicate=Replicate dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
    Until\ group regulation\ html wgEncodeOpenChromFaire.release2\ longLabel Open Chromatin by FAIRE from ENCODE/OpenChrom(UNC Chapel Hill)\ noInherit on\ shortLabel UNC FAIRE\ sortOrder cellType=+ treatment=+ view=+\ subGroup1 view Views Peaks=Peaks SIG=Density_Signal SIGBO=Overlap_Signal\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2A549=A549 (Tier_2) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2MCF7=MCF-7 (Tier_2) t3COLONOC=Colon t3ENDOMETRIUMOC=Endometrium t3FRONTALCORTEXOC=Frontal_cortex t3GLIOBLA=Gliobla t3GM12891=GM12891 t3GM12892=GM12892 t3GM18507=GM18507 t3GM19239=GM19239 t3HTR8SVN=HTR8svn t3KIDNEYOC=Kidney t3MEDULLO=Medullo t3MRTA204=MRT_A204 t3MRTG401=MRT_G401 t3MRTTTC549=MRT_TTC549 t3NHA=NH-A t3NHBE=NHBE t3NHEK=NHEK t3PANCREASOC=Pancreas t3PANISLETS=PanIslets t3RCC7860=RCC_7860 t3SMALLINTESTINEOC=Small_intestine t3UROTHELIA=Urothelia\ subGroup3 treatment Treatment AANONE=None EST10NM30M=Estradiol_10nM_30m HYDROUREA=Hydroxyurea HYPOXLAC=Hypoxia_LacAcid IFNa4h=IFNα_4hrs IFNg4h=IFNγ_4hrs NaBut=Sodium_Butyrate SERUMFREE=Serum_Free UT189=UT189_E.coli VEH=Vehicle EST10NM30M=Estradiol_10nM_30m\ superTrack wgEncodeDNAseSuper dense\ track wgEncodeOpenChromFaire\ type bed 3\ useScore 0\ wgEncodeUncBsuProtGenc UNC/BSU ProtGenc bed 3 Proteogenomics Hg19 and GENCODE Mapping from ENCODE/Univ. North Carolina/Boise State Univ. 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    The ENCODE project has revealed the functional elements of segments\ of the human genome in unprecedented detail. However, the ability to\ distinguish between transcripts designated for translation into protein\ and those that serve purely regulatory roles remains elusive. A\ standard means to determine if translation is occurring is to measure \ protein produced by transcripts via mass spectrometry-based proteogenomic\ mapping. In this process, proteins were digested to peptides using a protease \ such as trypsin and these petides were chromatographically fractionated and\ fed into a tandem mass spectrometer (MS/MS). This process creates a signature \ series of fragment masses which can be scanned against the theoretical \ translation and proteolytic digest of an entire genome to identify the genomic \ origins of sample proteins (Giddings et al., 2003).

    \ \

    This proteogenomic track displays mass spectrometry data that have been \ matched to genomic sequences for selected cell lines, using a workflow and \ software specifically designed for this purpose. The track can be used to \ identify which parts of the genome are translated into proteins, to verify \ which transcripts discovered by other ENCODE experiments are protein-coding,\ to reveal new genes and/or splice variants and proteins with post-translational \ modifications (PTM). Of particular interest is the possibility\ of uncovering the translation of small open reading frames (ORFs), antisense \ transcripts, or protein-coding regions that have been annotated as introns \ previously.\

    \ \

    Display Conventions and Configuration

    \ \

    \ This track is a multi-view composite track that contains multiple data types\ (views). For each view, there are multiple subtracks that\ display individually on the browser. Instructions for configuring multi-view\ tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide. Color differences among the views are arbitrary. They provide a\ visual cue for distinguishing between the different cell types and compartments.\ Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

    \ \

    This track shows peptide mappings as contiguous rectangular\ items rendered in grayscale according to their\ score, with darker items representing higher-confidence peptide mappings.\ The name of each item is the amino acid sequence of the peptide where a period (.)\ at the end of a name signifies a stop codon.\

    \ \
    \
    Peptide Genome and GENCODE Mapping(Filtered)\
    Peptide mapping results based on hg19 and GENCODE annotation for mass-spectrometry-based proteomics experiments filtered for a false discovery rate (FDR) better than 5%. Specific field descriptions can be found below.\
    Modified Peptide Genome and GENCODE Mapping(Filtered)\
    Modified peptide mapping results based on hg19 and GENCODE annotation for mass-spectrometry-based proteomics experiments filtered for a false discovery rate (FDR) better than 5%.\
    \
    \ \

    \ \ Unfiltered views are available on the Downloads page.\

    \ \ \ \ \ \ \ \ \

    Fields specific to Proteogenomic tracks include:

    \
      \
    • The Item names the peptide sequence and\ is appended with a number for proteins with post-translational modifications (PTM)\ representing the integer portion of the PTM mass. The peptide sequence appears as a short label beside\ the main Genome Browser display window depending on the view configuration.
      • \
    • The Score is used to render shade to\ displayed rectangular items and is derived from the rawScore (see below) given by the proteomics \ peptide mapping software Peppy. It is computed as [(rawScore\ - rawScore at 10% FDR cutoff) /\ (rawScore at near 0% FDR cutoff -\ rawScore at 10% FDR cutoff)] * 1000,\ and is then converted to an integer. Raw scores above the 0% FDR threshold have\ a score of 1000 (best), while those below the 10% FDR threshold have a score of 0 (worst).
      • \
    • The rawScore is given by Peppy \ and is expressed as the negative log 10 of the p-value, which reflects\ the confidence of the mapping between the peptides and the spectrums.\ On the item details pages, rawScore is labeled: Raw score for a peptide/spectrum match.
      • \
    • The spectrumId is an identifier of the\ spectrum associated with the peptide mapping and can be used to track the original spectrum.\ On the item details pages, spectrumId is labeled: An identifier of the spectrum\ associated with the peptide mapping.
      • \
    • The peptideRank is a rank of the\ peptide/spectrum match used for a spectrum matching to different peptides. A spectrum\ can be chimeric (containing more than one peptide) and the spectrum can be mapped\ to two or more distinct peptides. Here, only the top-scoring match is reported. If more\ than one peptide "tied" for the top score, then all peptides were included and all \ matches have a peptideRank of 1. On the\ item details pages, peptideRank is labeled: Rank of the peptide/spectrum match,\ for spectrum matching to different peptides.
      • \
    • The peptideRepeatCount indicates the\ number of places in the genome where the peptide is encoded for a peptide/spectrum\ match. It reflects the prevalence or uniqueness of the peptide mapping in the genome.\ Those peptides mapped to only a few genomic locations will have a low\ peptideRepeatCount, whereas those peptides mapped\ to highly duplicated regions will have a high peptideRepeatCount. Peptides with\ a peptideRepeatCount greater than 10 times in the genome were\ deleted from the track (this field is for regular peptides only). On the \ item details pages, peptideRepeatCount is labeled: Indicates the number\ of places in the genome where the peptide is encoded for a peptide/spectrum match.
      • \
    • The modificationMass reflects the \ additional molecular weight for each modified peptide matched to a spectrum (this\ field is for PTM peptides only). On the item details pages, modificationMass is labeled:\ Reflects the additional molecular weight for each modified peptide matched to a spectrum.
      • \
    \ \ \

    Methods

    \ \

    ENCODE cell lines K562, GM12878, H1-hESC and H1-neurons were used for this \ large scale proteomic analysis. Cell lines were cultured according to standard\ ENCODE cell culture protocols\ and tryptic peptides were prepared using In-gel digestion (Shevchenko et al.,\ 2007), FASP (Wiseniewski et al., 2009; Manza et al., 2005) \ or MudPIT (Washburn et al., 2001) protocols as indicated for each sample. \ Tandem mass spectrometry (RPLC-MS/MS) analysis was then performed on an Eksigent \ Ultra-LTQ Orbitrap system or a Q Exactive system (Thermo Scientific) as indicated.* \ The number of arginine or lysine sites missed by the trypsin enzyme is indicated by \ the metadata parameter miscleavages.\ \

    We performed proteogenomic mapping (Jaffe et al., 2004) on an in silico \ translation and proteolytic digestion of the whole human genome (UCSC Hg19), and \ the GENCODE translation of protein-coding transcripts database with up to \ one missed cleavage using \ Peppy software. The GENCODE version for H1-hESC (FASP protocol), K562, and \ GM12878 is V11 and it is V10 for H1-hESC (MudPIT protocol) and H1-neurons datasets. \ GENCODE V11 was initially used for database search and it was later found that \ GENCODE V10 is the preferred version and was subsequently used to replace GENCODE \ V11 for the analyses of the later datasets. Peppy's embedded algorithm matches \ the MS/MS spectra to peptides and outputs a matching score, and the peptides are \ then mapped back to their corresponding genomic sequences. The peptide/spectrum \ matches (PSMs) found from Hg19 genome and GENCODE searches were compared and the PSMs \ of higher score from either matches were reported. If the scores from both matches \ are equal, both of them were reported. Additional peptides matches were found by \ GENCODE search that were not found in Hg19 genome search, some of which span slice \ junctions. Overall, a cross-comparison and inclusion of results from both database \ searches resulted in a greater coverage.\ \

    \ For both the Hg19 genome and GENCODE database searches, a blind search for \ post-translational modifications (PTMs) was performed using Peppy software. \ In a blind PTM search, when Peppy matches a MS/MS spectrum to a peptide, if the \ matching score is increased after the addition of the molecular weight (MW) of a \ potential PTM, the peptide is determined as having a PTM. In the output of both the\ Hg19 genome and GENCODE searches, some spectra were output as matched with peptides \ of PTMs and others were output as matched with regular peptides, i.e., peptides \ without PTMs. Once the best-ranking PSMs were identified from either search, the\ regular peptides and peptides with PTMs were displayed in separate tracks. \

    \ \

    \ For each data set, a reverse database search was also performed using all spectra\ to calculate the false discovery rate (FDR) (Elias et al., 2007). Only\ those matches with a FDR rate below 5% were included in this track. The\ unfiltered results of those peptides matches with an FDR rate below 10% are available \ for download.\

    \ \ *H1-hESC (FASP protocol), K562 and GM12878 samples were analyzed on the Eksigent \ Ultra LTQ Orbitrap system (Thermo Scientific) whereas H1-hESC (MudPIT protocol), \ H1-neurons sample were analyzed on the Q Exactive system (Thermo Scientific).\ \

    Release Notes

    \ This is Release 1 of this track (Sept 2012). Unlike other ENCODE data, these data are not archived at GEO but at Proteome Commons. The first 32 digits of the Tranche Hash for each data set is stored as the labExpId.\ \

    Credits

    \

    Proteogenomic mapping: Dr. John Wrobel, Dr. Jainab Khatun, Mr. Brian Risk, \ and Mr. David Thomas (Giddings Lab).

    \

    Proteomic analysis: Dr. Yanbao Yu, Dr. Harsha Gunawardena, Dr. Ling Xie and \ Ms. Li Wang (Chen Lab).\

    \ Main Contact:\ John Wrobel\ \ \

    References

    \ \

    \ Giddings MC, Shah AA, Gesteland R, Moore B.\ \ Genome-based peptide fingerprint scanning.\ Proc Natl Acad Sci U S A. 2003 Jan 7;100(1):20-5.\

    \ \ Shevchenko A, Tomas H, Havlis J, Olsen JV, Mann M.\ \ In-gel digestion for mass spectrometric characterization of proteins and proteomes.\ Nat Protoc. 2006;1(6):2856-60.\

    \ \

    \ Wisniewski JR, Zougman A, Nagaraj N, Mann M.\ \ Universal sample preparation method for proteome analysis.\ Nat Methods. 2009 May;6(5):359-62.\

    \ \

    \ Manza LL, Stamer SL, Ham AJ, Codreanu SG, Liebler DC.\ \ Sample preparation and digestion for proteomic analyses using spin filters.\ Proteomics. 2005 May;5(7):1742-5.\

    \ \

    \ Washburn MP, Wolters D, Yates JR 3rd.\ \ Large-scale analysis of the yeast proteome by multidimensional protein identification\ technology.\ Nat Biotechnol. 2001 Mar;19(3):242-7.\

    \ \

    \ Jaffe JD, Berg HC, Church GM.\ \ Proteogenomic mapping as a complementary method to perform genome annotation.\ Proteomics. 2004 Jan;4(1):59-77.\

    \ \

    \ Elias JE, Gygi SP.\ \ Target-decoy search strategy for increased confidence in large-scale protein identifications by mass\ spectrometry.\ Nat Methods. 2007 Mar;4(3):207-14.\

    \ \ \

    Data Release Policy

    \ \

    Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset\ until\ nine months following the release of the dataset. This date is listed\ in\ the Restricted Until column above. The full data release policy for ENCODE is available\ here.

    \ expression 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell localization=localization protocol=protocol\ dimensionZchecked FASP,INGEL,MUDPIT\ dimensions dimensionX=cellType dimensionY=localization dimensionZ=protocol\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line localization=Localization protocol=Protocol view=View labExpId=Lab_Exp_ID dccAccession=UCSC_Accession fileSize=Size dateSubmitted=Submitted dateUnrestricted=RESTRICTED
    Until\ group expression\ longLabel Proteogenomics Hg19 and GENCODE Mapping from ENCODE/Univ. North Carolina/Boise State Univ.\ noInherit on\ priority 0\ shortLabel UNC/BSU ProtGenc\ sortOrder cellType=+ localization=+ protocol=+\ subGroup1 view Views pepMapGcFt=Peptide_Mapping_with_Hg19_and_GENCODE_(Filtered) mPepMapGcFt=Modified_Peptide_Mapping_with_Hg19_and_GENCODE_(Filtered)\ subGroup2 cellType Cell_Line GM12878=GM12878 (Tier_1) H1HESC=H1-hESC (Tier_1) K562=K562 (Tier_1) H1NEURONS=H1-neurons (Tier_2)\ subGroup3 localization Localization CYTOSOL=Cytosol CELL=Whole_Cell membraneFraction=Membrane mito=Mitochondria nucleus=Nucleus\ subGroup4 protocol Protocol FASP=FASP INGEL=In-gel MUDPIT=MudPIT\ superTrack wgEncodeProtGenoSuper dense\ track wgEncodeUncBsuProtGenc\ type bed 3\ visibility hide\ wgEncodeUncBsuProt UNC/BSU ProtGeno bed 3 Proteogenomics Hg19 Mapping from ENCODE/Univ. North Carolina/Boise State Univ. 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    The ENCODE project has revealed the functional elements of segments\ of the human genome in unprecedented detail. However, the ability to\ clearly distinguish transcripts designated for translation into protein\ versus those that serve purely regulatory roles remains elusive. The\ standard means for doing this is to measure the proteins, if any, that\ are produced by transcripts via mass spectrometry-based proteogenomic\ mapping. In this process, chromatographically fractionated peptides are\ fed into a tandem mass spectrometer (MS/MS). The series of fragment\ masses produced in MS/MS create a signature that can then be used to\ identify the peptide from a protein or DNA sequence database. For\ proteogenomic mapping, this identifying spectrum is mapped directly\ back to its most likely encoding locus on a genome sequence (Giddings, et al. 2003). This\ allows the direct verification of protein-encoding transcripts.

    \ \

    The proteogenomic track displays mass spectrometry data that have\ been matched to the genomic sequence for selected cell lines, using a\ workflow and software specifically designed for this purpose.

    \

    The proteogenomic tracks can be used to identify which parts of the\ genome are translated into proteins, to verify which transcripts\ discovered by ENCODE are protein-encoding, and can also reveal new\ genes and/or splice variants of genes. Of particular interest may be\ its ability to reveal the translation of small open reading frames (ORFs), antisense\ transcripts, or sites annotated as introns that encode proteins.\

    \ \

    Display Conventions and Configuration

    \ \

    The display for this track shows peptide mappings as contiguous,\ rectangular items. These items are rendered in grayscale according to the\ score, with darker items representing higher-confidence peptide mappings. \ The name of each item is the amino acid\ sequence of the peptide. If a period (.) appears at the end of a\ name, it signifies a stop codon. \
    \

    \

    In addition to the displayed genomic coordinates, several additional\ fields are available for each track item.
    \

    \
      \
    • The Raw Score reflects\ the strength of the peptide mapping, in contrast to\ the Score field which\ reflects the confidence of the mapping. The Score field is computed as -100×log10(E-Value) for the peptide mapping, and\ scores of 200 or greater have an estimated 5% false discovery rate\ (FDR) while scores of 230 or greater have an estimated 1%\ FDR. The Raw Score offers\ an additional level of confidence: raw scores of 300 or greater have\ an estimated 5% false discovery rate. Note\ that Raw Score is not\ normalized for the length of the peptide mapping,\ while Score is.\ Consequently, short mappings might have a\ strong Raw Score but a\ weaker\ Score.
      • \
    • The Spectrum ID is a\ semi-unique identifier of the spectrum associated with the peptide\ mapping, and can be used to track the origins of the mapping.
      \
      • \
    • The Peptide Rank \ indicates the rank of each peptide/spectrum mapping. A spectrum can\ be chimeric, containing more than one peptide, and the spectrum can be\ mapped with confidence to two or more distinct peptides. Peptides\ with ranks greater than 3 are deleted from the track.
      • \
    • The Peptide Repeat Count\ indicates the number of places in the genome that match the peptide\ sequence. This reflects the uniqueness of the peptide mapping in the\ genome. Any mappings to highly-duplicated regions will have a\ high Peptide Repeat Count and\ peptides which were repeated more than 10 times in the genome were\ deleted from the track.
      \
      • \
    \ \

    Methods

    \ \

    ENCODE cell lines K562 and GM12878 were used for large scale\ proteomic analysis. Cell lines were cultured according to standard\ ENCODE cell culture protocols\ and in-gel digestion was completed according to the standard\ protocol (Shevchenko, et al. 2007).

    \ The proteolytic enzyme trypsin was used to digest the proteins\ in order to produce short, MS/MS analyzable peptides. Trypsin is a\ common protease that typically cleaves proteins after Arginine or Lysine. The\ metadata parameter enzyme specifies the restriction enzyme used\ for digestion. Tandem mass spectrometry (RPLC-MS/MS) analysis was then\ performed on an Eksigent Ultra-LTQ Orbitrap system. However, due\ to enzyme inefficiency, it does not always cleave at Arginine or Lysine, so there\ may be peptides that include an uncleaved Arg/Lys site. The number of such\ missed cleavages allowed in the search is described by the metadata\ parameter miscleavages.\

    We performed proteogenomic mapping (Jaffe, et al., 2004) with two missed cleavages\ allowed and using the whole human genomic sequence (UCSC hg19) via the\ genome fingerprint scanning (GFS) program (Giddings, et al. 2003) and newly \ developed Peppy \ (http://www.peppyresearch.com/). \ We used HMM_Score (Khatun, et al. 2008) to accurately match MS/MS\ spectra to their corresponding genome sequences. E-values are\ calculated, which estimate the number of results at the given score\ level which would be expected by random chance. We then empirically\ derived the false discovery rate for a given E-Value using a decoy\ database search and only those matches falling within the specified 5%\ FDR rate (E-Value <0.01) are included in the track. The results with\ 10% FDR (E-Value <0.05) are available under the Downloads page as Raw Signal.

    \

    Release Notes

    \ \

    \ This is Release 2 (July 2012). It contains a total of seven Proteogenomics experiments\ with the addition of one experiment available by download only. Unlike other ENCODE data,\ these data are not archived at GEO but at Proteome Commons.\ The first 32 digits of the Tranche Hash for each data set is stored as the labExpId.\

    \ \

    Credits

    \

    Proteogenomic mapping: Dr. Jainab Khatun, Brian Risk, Mustaque\ Ahamed, Christopher Maier, Dr. John Wrobel and Dennis Crenshaw (Giddings Lab).

    \

    Proteomic analysis: Drs. Yanbao Yu and Ling Xie (Chen Lab).

    \ Main Contact:\ \ Jainab Khatun\ \ \

    References

    \ \

    \ Giddings MC, Shah AA, Gesteland R, Moore B.\ \ Genome-based peptide fingerprint scanning.\ Proc Natl Acad Sci U S A. 2003 Jan 7;100(1):20-5.\

    \ \

    \ Jaffe JD, Berg HC, Church GM.\ \ Proteogenomic mapping as a complementary method to perform genome annotation.\ Proteomics. 2004 Jan;4(1):59-77.\

    \ \

    \ Khatun J, Hamlett E, Giddings MC.\ \ Incorporating sequence information into the scoring function: a hidden Markov model for improved peptide identification.\ Bioinformatics. 2008 Mar 1;24(5):674-81.\

    \ \

    \ Shevchenko A, Tomas H, Havlis J, Olsen JV, Mann M.\ \ In-gel digestion for mass spectrometric characterization of proteins and proteomes.\ Nat Protoc. 2006;1(6):2856-60.\

    \ \

    Data Release Policy

    \ \

    Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset\ until\ nine months following the release of the dataset. This date is listed\ in\ the Restricted Until column on the track configuration page\ and\ the download page. The full data release policy for ENCODE is available\ here.

    \ expression 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell\ dimensions dimensionX=cellType dimensionY=localization\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line localization=Localization protocol=Protocol view=View labExpId=Lab_Exp_ID dccAccession=UCSC_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
    Until\ group expression\ html wgEncodeUncBsuProt.release2\ longLabel Proteogenomics Hg19 Mapping from ENCODE/Univ. North Carolina/Boise State Univ.\ noInherit on\ priority 0\ shortLabel UNC/BSU ProtGeno\ sortOrder cellType=+ localization=+\ subGroup1 view Views Signal=Peptide_Mapping ModifiedPeptideMapping=Modified_Peptide_Mapping\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1K562=K562 (Tier_1)\ subGroup3 localization Localization CELL=Whole_Cell CYTOSOL=Cytosol membraneFraction=Membrane mito=Mitochondria nucleus=Nucleus\ subGroup4 protocol Protocol FASP=FASP INGEL=In-gel\ superTrack wgEncodeProtGenoSuper dense\ track wgEncodeUncBsuProt\ type bed 3\ visibility hide\ uniprot UniProt bigBed 12 + UniProt SwissProt/TrEMBL Protein Annotations 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This track shows protein sequences and annotations on them from the UniProt/SwissProt database,\ mapped to genomic coordinates. \

    \

    \ UniProt/SwissProt data has been curated from scientific publications by the UniProt staff,\ UniProt/TrEMBL data has been predicted by various computational algorithms.\ The annotations are divided into multiple subtracks, based on their "feature type" in UniProt.\ The first two subtracks below - one for SwissProt, one for TrEMBL - show the\ alignments of protein sequences to the genome, all other tracks below are the protein annotations\ mapped through these alignments to the genome.\

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    Track NameDescription
    UCSC Alignment, SwissProt = curated protein sequencesProtein sequences from SwissProt mapped to the genome. All other\ tracks are (start,end) SwissProt annotations on these sequences mapped\ through this alignment. Even protein sequences without a single curated \ annotation (splice isoforms) are visible in this track. Each UniProt protein \ has one main isoform, which is colored in dark. Alternative isoforms are \ sequences that do not have annotations on them and are colored in light-blue. \ They can be hidden with the TrEMBL/Isoform filter (see below).
    UCSC Alignment, TrEMBL = predicted protein sequencesProtein sequences from TrEMBL mapped to the genome. All other tracks\ below are (start,end) TrEMBL annotations mapped to the genome using\ this track. This track is hidden by default. To show it, click its\ checkbox on the track configuration page.
    UniProt Signal PeptidesRegions found in proteins destined to be secreted, generally cleaved from mature protein.
    UniProt Extracellular DomainsProtein domains with the comment "Extracellular".
    UniProt Transmembrane DomainsProtein domains of the type "Transmembrane".
    UniProt Cytoplasmic DomainsProtein domains with the comment "Cytoplasmic".
    UniProt Polypeptide ChainsPolypeptide chain in mature protein after post-processing.
    UniProt Regions of InterestRegions that have been experimentally defined, such as the role of a region in mediating protein-protein interactions or some other biological process.
    UniProt DomainsProtein domains, zinc finger regions and topological domains.
    UniProt Disulfide BondsDisulfide bonds.
    UniProt Amino Acid ModificationsGlycosylation sites, modified residues and lipid moiety-binding regions.
    UniProt Amino Acid MutationsMutagenesis sites and sequence variants.
    UniProt Protein Primary/Secondary Structure AnnotationsBeta strands, helices, coiled-coil regions and turns.
    UniProt Sequence ConflictsDifferences between Genbank sequences and the UniProt sequence.
    UniProt RepeatsRegions of repeated sequence motifs or repeated domains.
    UniProt Other AnnotationsAll other annotations, e.g. compositional bias
    \

    \ For consistency and convenience for users of mutation-related tracks,\ the subtrack "UniProt/SwissProt Variants" is a copy of the track\ "UniProt Variants" in the track group "Phenotype and Literature", or \ "Variation and Repeats", depending on the assembly.\

    \ \

    Display Conventions and Configuration

    \ \

    \ Genomic locations of UniProt/SwissProt annotations are labeled with a short name for\ the type of annotation (e.g. "glyco", "disulf bond", "Signal peptide"\ etc.). A click on them shows the full annotation and provides a link to the UniProt/SwissProt\ record for more details. TrEMBL annotations are always shown in \ light blue, except in the Signal Peptides,\ Extracellular Domains, Transmembrane Domains, and Cytoplamsic domains subtracks.

    \ \

    \ Mouse over a feature to see the full UniProt annotation comment. For variants, the mouse over will\ show the full name of the UniProt disease acronym.\

    \ \

    \ The subtracks for domains related to subcellular location are sorted from outside to inside of \ the cell: Signal peptide, \ extracellular, \ transmembrane, and cytoplasmic.\

    \ \

    \ Features in the "UniProt Modifications" (modified residues) track are drawn in \ light green. Disulfide bonds are shown in \ dark grey. Topological domains\ in maroon and zinc finger regions in \ olive green.\

    \ \

    \ Duplicate annotations are removed as far as possible: if a TrEMBL annotation\ has the same genome position and same feature type, comment, disease and\ mutated amino acids as a SwissProt annotation, it is not shown again. Two\ annotations mapped through different protein sequence alignments but with the same genome\ coordinates are only shown once.

    \ \

    On the configuration page of this track, you can choose to hide any TrEMBL annotations.\ This filter will also hide the UniProt alternative isoform protein sequences because\ both types of information are less relevant to most users. Please contact us if you\ want more detailed filtering features.

    \ \

    Note that for the human hg38 assembly and SwissProt annotations, there\ also is a public\ track hub prepared by UniProt itself, with \ genome annotations maintained by UniProt using their own mapping\ method based on those Gencode/Ensembl gene models that are annotated in UniProt\ for a given protein. For proteins that differ from the genome, UniProt's mapping method\ will, in most cases, map a protein and its annotations to an unexpected location\ (see below for details on UCSC's mapping method).

    \ \

    Methods

    \ \

    \ Briefly, UniProt protein sequences were aligned to the transcripts associated\ with the protein, the top-scoring alignments were retained, and the result was\ projected to the genome through a transcript-to-genome alignment.\ Depending on the genome, the transcript-genome alignments was either\ provided by the source database (NBCI RefSeq), created at UCSC (UCSC RefSeq) or\ derived from the transcripts (Ensembl/Augustus). The transcript set is NCBI\ RefSeq for hg38, UCSC RefSeq for hg19 (due to alt/fix haplotype misplacements \ in the NCBI RefSeq set on hg19). For other genomes, RefSeq, Ensembl and Augustus \ are tried, in this order. The resulting protein-genome alignments of this process \ are available in the file formats for liftOver or pslMap from our data archive\ (see "Data Access" section below).\

    \ \

    An important step of the mapping process protein -> transcript ->\ genome is filtering the alignment from protein to transcript. Due to\ differences between the UniProt proteins and the transcripts (proteins were\ made many years before the transcripts were made, and human genomes have\ variants), the transcript with the highest BLAST score when aligning the\ protein to all transcripts is not always the correct transcript for a protein\ sequence. Therefore, the protein sequence is aligned to only a very short list\ of one or sometimes more transcripts, selected by a three-step procedure:\

      \
    1. Use transcripts directly annotated by UniProt: for organisms that have a RefSeq transcript track,\ proteins are aligned to the RefSeq transcripts that are annotated\ by UniProt for this particular protein.\
    2. Use transcripts for NCBI Gene ID annotated by UniProt: If no transcripts are annotated on the\ protein, or the annotated ones have been deprecated by NCBI, but a NCBI Gene ID is\ annotated, the RefSeq transcripts for this Gene ID are used. This can result in multiple matching transcripts for a protein.\
    3. Use best matching transcript: If no NCBI Gene is\ annotated, then BLAST scores are used to pick the transcripts. There can be multiple transcripts for one\ protein, as their coding sequences can be identical. All transcripts within 1% of the highest observed BLAST score are used.\
    \

    \ \

    \ For strategy 2 and 3, many of the transcripts found do not differ in coding\ sequence, so the resulting alignments on the genome will be identical.\ Therefore, any identical alignments are removed in a final filtering step. The\ details page of these alignments will contain a list of all transcripts that\ result in the same protein-genome alignment. On hg38, only a handful of edge\ cases (pseudogenes, very recently added proteins) remain in 2023 where strategy\ 3 has to be used.

    \ \

    In other words, when an NCBI or UCSC RefSeq track is used for the mapping and to align a\ protein sequence to the correct transcript, we use a three stage process:\

      \
    1. If UniProt has annotated a given RefSeq transcript for a given protein\ sequence, the protein is aligned to this transcript. Any difference in the\ version suffix is tolerated in this comparison. \
    2. If no transcript is annotated or the transcript cannot be found in the\ NCBI/UCSC RefSeq track, the UniProt-annotated NCBI Gene ID is resolved to a\ set of NCBI RefSeq transcript IDs via the most current version of NCBI\ genes tables. Only the top match of the resulting alignments and all\ others within 1% of its score are used for the mapping.\
    3. If no transcript can be found after step (2), the protein is aligned to all transcripts,\ the top match, and all others within 1% of its score are used.\
    \ \

    This system was designed to resolve the problem of incorrect mappings of\ proteins, mostly on hg38, due to differences between the SwissProt\ sequences and the genome reference sequence, which has changed since the\ proteins were defined. The problem is most pronounced for gene families\ composed of either very repetitive or very similar proteins. To make sure that\ the alignments always go to the best chromosome location, all _alt and _fix\ reference patch sequences are ignored for the alignment, so the patches are\ entirely free of UniProt annotations. Please contact us if you have feedback on\ this process or example edge cases. We are not aware of a way to evaluate the\ results completely and in an automated manner.

    \

    \ Proteins were aligned to transcripts with TBLASTN, converted to PSL, filtered\ with pslReps (93% query coverage, keep alignments within top 1% score), lifted to genome\ positions with pslMap and filtered again with pslReps. UniProt annotations were\ obtained from the UniProt XML file. The UniProt annotations were then mapped to the\ genome through the alignment described above using the pslMap program. This approach\ draws heavily on the LS-SNP pipeline by Mark Diekhans.\ Like all Genome Browser source code, the main script used to build this track\ can be found on Github.\

    \ \

    Older releases

    \

    \ This track is automatically updated on an ongoing basis, every 2-3 months.\ The current version name is always shown on the track details page, it includes the\ release of UniProt, the version of the transcript set and a unique MD5 that is\ based on the protein sequences, the transcript sequences, the mapping file\ between both and the transcript-genome alignment. The exact transcript\ that was used for the alignment is shown when clicking a protein alignment\ in one of the two alignment tracks.\

    \ \

    \ For reproducibility of older analysis results and for manual inspection, previous versions of this track\ are available for browsing in the form of the UCSC UniProt Archive Track Hub (click this link to connect the hub now). The underlying data of\ all releases of this track (past and current) can be obtained from our downloads server, including the UniProt\ protein-to-genome alignment.

    \ \

    Data Access

    \ \

    \ The raw data of the current track can be explored interactively with the\ Table Browser, or the\ Data Integrator.\ For automated analysis, the genome annotation is stored in a bigBed file that \ can be downloaded from the\ download server.\ The exact filenames can be found in the \ track configuration file. \ Annotations can be converted to ASCII text by our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, for example:\

    \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/uniprot/unipStruct.bb -chrom=chr6 -start=0 -end=1000000 stdout \

    \ Please refer to our\ mailing list archives\ for questions, or our\ Data Access FAQ\ for more information. \

    \ \

    \ \

    Lifting from UniProt to genome coordinates in pipelines

    \

    To facilitate mapping protein coordinates to the genome, we provide the\ alignment files in formats that are suitable for our command line tools. Our\ command line programs liftOver or pslMap can be used to map\ coordinates on protein sequences to genome coordinates. The filenames are\ unipToGenome.over.chain.gz (liftOver) and unipToGenomeLift.psl.gz (pslMap).

    \ \

    Example commands:\ 

    \
wget -q https://hgdownload.soe.ucsc.edu/goldenPath/archive/hg38/uniprot/2022_03/unipToGenome.over.chain.gz\
wget -q https://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/liftOver\
chmod a+x liftOver\
echo 'Q99697 1 10 annotationOnProtein' > prot.bed\
liftOver prot.bed unipToGenome.over.chain.gz genome.bed\
cat genome.bed\
    \

    \ \

    Credits

    \ \

    \ This track was created by Maximilian Haeussler at UCSC, with a lot of input from Chris\ Lee, Mark Diekhans and Brian Raney, feedback from the UniProt staff, Alejo\ Mujica, Regeneron Pharmaceuticals and Pia Riestra, GeneDx. Thanks to UniProt for making all data\ available for download.\

    \ \

    References

    \ \

    \ UniProt Consortium.\ \ Reorganizing the protein space at the Universal Protein Resource (UniProt).\ Nucleic Acids Res. 2012 Jan;40(Database issue):D71-5.\ PMID: 22102590; PMC: PMC3245120\

    \ \

    \ Yip YL, Scheib H, Diemand AV, Gattiker A, Famiglietti LM, Gasteiger E, Bairoch A.\ \ The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure\ information on human protein variants.\ Hum Mutat. 2004 May;23(5):464-70.\ PMID: 15108278\

    \ genes 1 allButtonPair on\ compositeTrack on\ dataVersion /gbdb/$D/uniprot/version.txt\ exonNumbers off\ group genes\ hideEmptySubtracks off\ itemRgb on\ longLabel UniProt SwissProt/TrEMBL Protein Annotations\ mouseOverField comments\ shortLabel UniProt\ track uniprot\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#section_features" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility hide\ spMut UniProt Variants bigBed 12 + UniProt/SwissProt Amino Acid Substitutions 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \
    \

    NOTE:
    \ This track is intended for use primarily by physicians and other\ professionals concerned with genetic disorders, by genetics researchers, and\ by advanced students in science and medicine. While the genome browser database\ is open to the public, users seeking information about a personal medical or\ genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal questions.

    \ \

    \ This track shows the genomic positions of natural and artifical amino acid variants\ in the UniProt/SwissProt database.\ The data has been curated from scientific publications by the UniProt staff.\

    \ \

    Display Conventions and Configuration

    \ \

    \ Genomic locations of UniProt/SwissProt variants are labeled with the amino acid\ change at a given position and, if known, the abbreviated disease name. A\ "?" is used if there is no disease annotated at this location, but the\ protein is described as being linked to only a single disease in UniProt.\

    \ \

    \ Mouse over a mutation to see the UniProt comments.\

    \ \

    \ Artificially-introduced mutations are colored green and naturally-occurring variants are colored\ red. For full information about a particular variant, click the "UniProt variant" linkout. \ The "UniProt record" linkout lists all variants of a particular protein sequence.\ The "Source articles" linkout lists the articles in PubMed that originally described\ the variant(s) and were used as evidence by the UniProt curators.\

    \ \

    Methods

    \ \

    \ UniProt sequences were aligned to RefSeq sequences first with BLAT, then lifted\ to genome positions with pslMap. UniProt variants were parsed from the UniProt\ XML file. The variants were then mapped to the genome through the alignment\ using the pslMap program. This mapping approach\ draws heavily on the LS-SNP pipeline by Mark Diekhans. The complete script is\ part of the kent source tree and is located in src/hg/utils/uniprotMutations. \

    \ \

    Data Access

    \ \

    \ The raw data can be explored interactively with the\ Table Browser, or the\ Data Integrator.\ For automated analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from the\ download server.\ The underlying data file for this track is called spMut.bb. Individual \ regions or the whole genome annotation can be obtained using our tool bigBedToBed \ which can be compiled from the source code or downloaded as a precompiled binary\ for your system. Instructions for downloading source code and binaries can be found\ here. \ The tool can also be used to obtain only features within a given range, for example:\
    \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi/uniprot/spMut.bb -chrom=chr6 -start=0 -end=1000000 stdout \
    \ Please refer to our\ mailing list archives\ for questions, or our\ Data Access FAQ\ for more information. \

    \ \ \

    Credits

    \ \

    \ This track was created by Maximilian Haeussler, with advice from Mark Diekhans and Brian Raney.\

    \ \

    References

    \ \

    \ UniProt Consortium.\ \ Reorganizing the protein space at the Universal Protein Resource (UniProt).\ Nucleic Acids Res. 2012 Jan;40(Database issue):D71-5.\ PMID: 22102590; PMC: PMC3245120\

    \ \

    \ Yip YL, Scheib H, Diemand AV, Gattiker A, Famiglietti LM, Gasteiger E, Bairoch A.\ \ The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure\ information on human protein variants.\ Hum Mutat. 2004 May;23(5):464-70.\ PMID: 15108278\

    \ phenDis 1 bigDataUrl /gbdb/hg19/uniprot/unipMut.bb\ exonNumbers off\ group phenDis\ itemRgb on\ longLabel UniProt/SwissProt Amino Acid Substitutions\ maxWindowCoverage 10000000\ mouseOverField comments\ noScoreFilter on\ shortLabel UniProt Variants\ track spMut\ type bigBed 12 +\ urls variationId="http://www.uniprot.org/uniprot/$$" uniProtId="http://www.uniprot.org/uniprot/$$" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility hide\ wgEncodeOpenChromChip UTA TFBS bed 3 Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin) 0 100 0 0 0 127 127 127 1 0 0

    Description

    \ \

    These tracks display chromatin immunoprecipitation (ChIP-seq) evidence as\ part of the four Open Chromatin track sets (see below).\ ChIP-seq is a method to identify the specific location of proteins that are\ directly or indirectly bound to genomic DNA. By identifying the binding location\ of sequence-specific transcription factors, general transcription\ machinery components, and chromatin factors, ChIP can help in the functional\ annotation of the open chromatin regions identified by DNaseI HS mapping and\ FAIRE.\

    \

    Together with\ DNaseI HS and FAIRE experiments, these tracks display the locations of active\ regulatory elements identified as open chromatin in\ multiple cell types\ from the Duke, UNC-Chapel Hill, UT-Austin, and EBI ENCODE group.\ Within this project, open chromatin was identified using two\ independent and complementary methods: DNaseI hypersensitivity (HS)\ and Formaldehyde-Assisted Isolation of Regulatory Elements (FAIRE),\ combined with these ChIP-seq assays for select\ regulatory factors. DNaseI HS and FAIRE provide assay\ cross-validation with commonly identified regions delineating the\ highest confidence areas of open chromatin. These ChIP assays provide\ functional validation and preliminary annotation of a subset of\ open chromatin sites. Each method employed Illumina (formerly Solexa)\ sequencing by synthesis as the detection platform.\ The Tier 1 and Tier 2 cell types were additionally verified by a\ second platform, high-resolution 1% ENCODE tiled microarrays supplied by NimbleGen.\

    \

    As a background control experiment, the input genomic DNA sample that\ was used for ChIP was sequenced. Crosslinked chromatin\ was sheared and the crosslinks were reversed without carrying out the\ immunoprecipitation step. This sample was otherwise processed in a manner\ identical to the ChIP sample as described below. The input track is\ useful in revealing potential artifacts arising from the sequence\ alignment process such as copy number differences between the\ reference genome and the sequenced samples, as well as regions of\ poor sequence alignability. For cell lines for which there is \ no input experiment available, the peaks were generated using the control\ of generic_male or generic_female, as an attempt to create a general\ background based on input data from several cell types. These files\ are in "iff" format, which is used when calling peaks with\ F-seq software, and can be downloaded from the\ production lab directly\ from under the section titled "Copy number / karyotype correction."\

    \

    Other Open Chromatin track sets:\

      \
    • Data for the DNaseI HS experiments can be found in\ Duke DNaseI HS.\
    • Data for the FAIRE experiments can be found in\ UNC FAIRE.\
    • A synthesis of all the open chromatin assays for select cell lines can\ be found in\ Open Chrom Synth.\
    \ \

    Display Conventions and Configuration

    \ \

    This track is a multi-view composite track that contains a single data type\ with multiple levels of annotation (views). For each view, there are\ multiple subtracks representing different cell types that display individually\ on the browser. Instructions for configuring multi-view tracks are\ here.\ ChIP data displayed here represents a continuum of signal intensities.\ The Iyer lab recommends setting the "Data view scaling: auto-scale"\ option when viewing signal data in full mode to see the full dynamic\ range of the data. Note that in regions that do not have open chromatin sites,\ autoscale will rescale the data and inflate the background signal, making the\ regions appear noisy. Changing back to fixed scale will alleviate this issue.\ In general, for each experiment in each of the cell types, the\ UTA TFBS tracks contain the following views:\

    \
    Peaks
    \
    Regions of enriched signal in ChIP experiments.\ Peaks were called based on signals created using F-Seq, a software program\ developed at Duke (Boyle et al., 2008b). Significant regions were\ determined by fitting the data to a gamma distribution to calculate p-values.\ Contiguous regions where p-values were below a 0.05/0.01 threshold were\ considered significant. The solid vertical line in the peak represents the\ point with highest signal.
    \
    F-Seq Density Signal
    \
    Density graph (wiggle) of signal\ enrichment calculated using F-Seq for the combined set of sequences from all\ replicates. F-Seq employs Parzen kernel density estimation to create base pair\ scores (Boyle et al., 2008b). This method does not look at fixed-length\ windows but rather weights contributions of nearby sequences in proportion to\ their distance from that base. It only considers sequences aligned 4 or less\ times in the genome and uses an alignability background model to try to correct\ for regions where sequences cannot be aligned. For each cell type, especially\ important for those with an abnormal karyotype, a model to try to correct for\ amplifications and deletions that is based on control input data was also used.
    \
    Base Overlap Signal
    \
    An alternative version of the\ F-Seq Density Signal track annotation that provides a higher resolution\ view of the raw sequence data. This track also includes the combined set of\ sequences from all replicates. For each sequence, the aligned read is\ extended 5 bp in both directions from its 5' aligned end where DNase cut\ the DNA. The score at each base pair represents the number of\ extended fragments that overlap the base pair.
    \
    \

    \

    Peaks and signals displayed in this track are the results of pooled replicates. The raw\ sequence and alignment files for each replicate are available for\ download.\

    \

    Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

    \ \

    Methods

    \ \

    Cells were grown according to the approved\ ENCODE cell culture protocols.\

    \

    To perform ChIP, proteins were cross-linked to DNA in vivo\ using 1% formaldehyde solution (Bhinge et al., 2007; ENCODE\ Project Consortium, 2007). Cross-linked chromatin was sheared by sonication\ and immunoprecipitated using a specific antibody against the protein of\ interest. After reversal of the cross-links, the immunoprecipitated DNA was\ used to identify the genomic location of transcription factor binding. This\ was accomplished by sequencing of the ends of the immunoprecipitated DNA\ (ChIP-seq) using the Illumina (Solexa) sequencing system. ChIP data for\ Tier 1 and Tier 2 cell lines were verified by comparing multiple independent\ growths (replicates) and determining the reproducibility of the data. For\ some cell types, additional verification was performed using the same\ immunoprecipitated DNA by labeling and hybridizing to NimbleGen Human\ ENCODE tiling arrays (1% of the genome) along with the input DNA as reference\ (ChIP-chip). A more detailed protocol is available\ here.\

    \

    DNA fragments isolated by ChIP are 100-200 bp in length, with the average\ length being 134 bp. Sequences from each experiment were aligned to the\ genome using Burrows-Wheeler Aligner (Li et al., 2010) for the GRCh37 (hg19) assembly.\

    The command used for these alignments was:
    \
    > bwa aln -t 8 genome.fa s_1.sequence.txt.bfq > s_1.sequence.txt.sai
    \
    Where genome.fa is the whole genome sequence and s_1.sequence.txt.bfq is one lane\ of sequences converted into the required bfq format.
    \

    \

    Sequences from multiple lanes\ are combined for a single replicate using the bwa samse command, and converted\ in the sam/bam format using SAMtools.\

    \

    Only those that aligned to 4 or fewer locations were retained. Other sequences\ were also filtered based on their alignment to problematic regions\ (such as satellites and rRNA genes - see\ supplemental materials).\ The mappings of these short reads to the genome are available for\ \ download.\

    \

    The resulting digital signal was converted to a continuous wiggle track using\ F-Seq that employs Parzen kernel density estimation to create base pair scores\ (Boyle et al., 2008b). Input data has been generated for several\ cell lines. These are used directly to create a control/background model used\ for F-Seq when generating signal annotations for these cell lines.\ These models are meant to correct for sequencing biases, alignment artifacts,\ and copy number changes in these cell lines. Input data is not being generated\ directly for other cell lines. Instead, a general background model was derived\ from the available input data sets. This should provide corrections for\ sequencing biases and alignment artifacts, but will not correct for cell\ type specific copy number changes.\

    \
    The exact command used for this step is:
    \
    CTCF:
    \
    > fseq -l 300 -v -b <bff files> -p <iff files> aligments.bed
    \
    c-Myc:
    \
    > fseq -l 600 -v -b <bff files> -p <iff files> aligments.bed
    \
    PolII:
    \
    > fseq -l 800 -v -b <bff files> -p <iff files> aligments.bed
    \
    Where the (bff files) are the background files based on alignability, the\ (iff files) are the background files based on the input experiments,\ and alignments.bed are a bed file of filtered sequence alignments.
    \

    \

    Discrete ChIP sites (peaks) were identified from ChIP-seq F-seq\ density signal. Significant regions were determined by fitting the\ data to a gamma distribution to calculate p-values. Contiguous regions\ where p-values were below a 0.05/0.01 threshold were considered significant.\

    \

    Data from the high-resolution 1% ENCODE tiled microarrays supplied by\ NimbleGen were normalized using the Tukey biweight normalization, and peaks\ were called using ChIPOTle (Buck, et al., 2005) at multiple levels\ of significance. Regions matched on size to these peaks that were devoid of\ any significant signal were also created as a null model. These data were used\ for additional verification of Tier 1 and Tier 2 cell lines by ROC analysis.\ Files labeled Validation view containing this data are available for\ download.\ \

    \ \

    Release Notes

    \ \

    \ Release 2 (August 2011) of this track adds 34 new experiments including 17 new cell lines.\

    \

    \

  • Enhancer and Insulator Functional assays: A subset of DNase and FAIRE\ regions were cloned into functional tissue culture reporter assays to test for\ enhancer and insulator activity. Coordinates and results from these\ experiments can be found\ here.\

    \ \

    Credits

    \ \

    \ These data and annotations were created by a collaboration of multiple\ institutions (contact:\ \ Terry Furey)\ \

    \

    \

    \ We thank NHGRI for ENCODE funding support.\

    \ \

    References

    \ \

    \ Bhinge AA, Kim J, Euskirchen GM, Snyder M, Iyer VR.\ \ Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE).\ Genome Res. 2007 Jun;17(6):910-6.\

    \ \

    \ Boyle AP, Davis S, Shulha HP, Meltzer P, Margulies EH, Weng Z, Furey TS, Crawford GE.\ \ High-resolution mapping and characterization of open chromatin across the genome.\ Cell. 2008 Jan 25;132(2):311-22.\

    \ \

    \ Boyle AP, Guinney J, Crawford GE, Furey TS.\ \ F-Seq: a feature density estimator for high-throughput sequence tags.\ Bioinformatics. 2008 Nov 1;24(21):2537-8.\

    \ \

    \ Buck MJ, Nobel AB, Lieb JD.\ \ ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data.\ Genome Biol. 2005;6(11):R97.\

    \ \

    \ Crawford GE, Davis S, Scacheri PC, Renaud G, Halawi MJ, Erdos MR, Green R, Meltzer PS, Wolfsberg TG, Collins FS.\ \ DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays.\ Nat Methods. 2006 Jul;3(7):503-9.\

    \ \

    \ Crawford GE, Holt IE, Whittle J, Webb BD, Tai D, Davis S, Margulies EH, Chen Y, Bernat JA, Ginsburg D et al.\ \ Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS).\ Genome Res. 2006 Jan;16(1):123-31.\

    \ \

    \ ENCODE Project Consortium, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET et al.\ \ Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.\ Nature. 2007 Jun 14;447(7146):799-816.\

    \ \

    \ Giresi PG, Kim J, McDaniell RM, Iyer VR, Lieb JD.\ \ FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin.\ Genome Res. 2007 Jun;17(6):877-85.\

    \ \

    \ Giresi PG, Lieb JD.\ \ Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements).\ Methods. 2009 Jul;48(3):233-9.\

    \ \

    \ Lee BK, Bhinge AA, Battenhouse A, McDaniell RM, Liu Z, Song L, Ni Y, Birney E, Lieb JD, Furey TS et al.\ \ Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells.\ Genome Res. 2012 Jan;22(1):9-24.\

    \ \

    \ Li H, Ruan J, Durbin R.\ \ Mapping short DNA sequencing reads and calling variants using mapping quality scores.\ Genome Res. 2008 Nov;18(11):1851-8.\

    \ \

    \ Song L, Crawford GE.\ \ DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells.\ Cold Spring Harb Protoc. 2010 Feb;2010(2):pdb.prot5384.\

    \ \

    Publications

    \ \

    \ Lee BK, Bhinge AA, Battenhouse A, McDaniell RM, Liu Z, Song L, Ni Y, Birney E, Lieb JD, Furey TS et al.\ \ Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells.\ Genome Res. 2012 Jan;22(1):9-24.\

    \ \

    Data Release Policy

    \ Data users may freely use ENCODE data, but may not, without prior consent,\ submit publications that use an unpublished ENCODE dataset until nine months\ following the release of the dataset. This date is listed in the Restricted\ Until column on the track configuration page and the download page. The\ full data release policy for ENCODE is available here.\ regulation 1 compositeTrack on\ configurable on\ controlledVocabulary encode/cv.ra cellType=cell factor=antibody treatment=treatment\ dataVersion ENCODE July 2011 Freeze\ dimensionAchecked AANONE\ dimensions dimA=treatment dimensionY=cellType dimensionX=factor\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line treatment=Treatment antibody=Antibody
    Target replicate=Replicate controlId=Control_ID view=View dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
    Until\ filterComposite dimA=multi\ group regulation\ html wgEncodeOpenChromChip.release2\ longLabel Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)\ noInherit on\ priority 0\ shortLabel UTA TFBS\ sortOrder cellType=+ factor=+ treatment=+ view=+\ subGroup1 view Views Peaks=Peaks SIG=Density_Signal SIGBO=Overlap_Signal\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2A549=A549 (Tier_2) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2MCF7=MCF-7 (Tier_2) t2MONOCYTESCD14RO01746=Monocytes_CD14+_RO01746 (Tier_2) t3COLONOC=Colon_OC t3FIBROBL=Fibrobl t3GLIOBLA=Gliobla t3GM10248=GM10248 t3GM10266=GM10266 t3GM12891=GM12891 t3GM12892=GM12892 t3GM13976=GM13976 t3GM13977=GM13977 t3GM19238=GM19238 t3GM19239=GM19239 t3GM19240=GM19240 t3GM20000=GM20000 t3HEARTOC=Heart_OC t3KIDNEYOC=Kidney_OC t3LNCAP=LNCaP t3LUNGOC=Lung_OC t3MEDULLO=Medullo t3NHEK=NHEK t3PANCREASOC=Pancreas_OC t3PROGFIB=ProgFib t3SPLEENOC=Spleen_OC\ subGroup3 factor Factor CTCF=CTCF CMYC=c-Myc POL2=Pol2 zCTRL=Input_Control\ subGroup4 treatment Treatment AANONE=None ANDRO=Androgen ESTRO=Estradiol SERUMSTAVD=serum_starved_media SERUMSTIM=serum_stimulated_media VEH=vehicle\ superTrack wgEncodeTfBindingSuper hide\ track wgEncodeOpenChromChip\ type bed 3\ useScore 0\ gnomADPextUterus Uterus bigWig 0 1 gnomAD pext Uterus 0 100 255 102 255 255 178 255 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Uterus.bw\ color 255,102,255\ longLabel gnomAD pext Uterus\ parent gnomadPext off\ shortLabel Uterus\ track gnomADPextUterus\ visibility hide\ wgEncodeUw5C UW 5C downloadsOnly Chromatin Interactions by 5C from ENCODE/University of Washington 1 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This track contains chromatin interaction data from the University of Washington ENCODE\ group generated using 5C (Chromatin Conformation Capture Carbon Copy).\ The 5C method is used here to define short and long-range range interactions \ between transcription start sites (TSS) and DNaseI hypersensitive sites (DHS) or other genomic features.\ The 5C method is summarized below.

    \

    \ Transcription factors bind to promoter-associated proteins, bringing the associated DNA sequences in close proximity to each other. Cross linking the DNA and proteins immobilizes these interactions and thus maintains their close proximity. Cleavage of the sample with restriction endonuclease followed by ligation results in hybrid molecules where a fragment with a regulatory element is physically associated with a fragment containing a TSS. The interactions are then detected by oligonucleotide-dependent, ligation-mediated assays, where one set of primers is complementary to the end of fragments with a TSS and the second set of primers are complementary to fragments with a feature. Primers are designed to the forward strand of the feature and the reverse strand of the TSS so that ligation only occurs between TSS and feature, not between different features. Specific interactions are detected by massively parallel sequencing.

    \

    \

    \ \ The data in this track comprises two different experiment types focusing on targeted\ regions:\ \

    \

    \ Gene-targeted project\

    \

    \ Analysis of DNase I hypersensitive sites reveals many genes where there\ are multiple sites restricted to the cell type where a protein\ is observed to be expressed. These sites potentially identify regulatory sites for the gene.\ This set of experiments attempts to observe interactions between these DHS sites and transcription starts\ in 25 regions selected based on genes expressed in GM06990 (B-lymphocyte),\ BJ (foreskin fibroblast), HepG2 (liver cancer cell line), or SK-N-SH_RA\ (neuroblastoma cell line, SKNSH, differentiated with retinoic acid).\

    \ Myc project\

    \ Genome wide association studies have identified SNPs linked to prostate, colon, and\ breast cancer in the gene desert region upstream of the myc gene.\ 5C of HindIII fragments interacting with those containing refSeq txStarts in \ this region were performed in 5 cell types: GM12878 (B-lymphocyte), \ CaCo2 (colon cancer cell line), LNCaP (prostate cancer cell line), MCF7\ (breast cancer cell line), and K562 (erythroleukemia cell line).\

    \ \

    File Conventions

    \ \

    \ The following types of data are available for download:\

    \
    \
    Matrix
    \
    \ Interaction files are in a matrix format indicating interaction strength,\ with "reverse primer name | genome version | reverse HindIII fragment coordinates" in\ the top row and "forward primer name | genome version | forward primer fragment coordinates"\ in the first column. The number of sequences mapped to each interaction fills the matrix.\ \ In order to understand the Matrix data, you must download the associated primer data file.\ \
    \
    Primer
    \
    \ Primer data files include the sequences of the primers used in the experiments and\ sequences for control sites in the ENCODE pilot ENr313 gene desert region on chr16.\ These files are available for download in the supplemental materials.
    \
    Raw Data
    \
    \ Sequencing files are provided in fastQ format.
    \
    \ \

    Methods

    \ \

    \ Cells were grown according to the approved\ ENCODE cell culture protocols.\ The isolated nuclei were formaldehyde cross-linked. The DNA isolated from the nuclei was cleaved with restriction enzyme, ligated, and cross-links removed to create a 3C library (Dekker et al., 2002). Primers complementary to the TSS and feature were added, annealed and ligated to produce a 5C library (Dostie et al., 2006). The DNA fragments generated in the ligation mediated-reactions were partially digested with DNaseI, end-repaired and ligated to adapters, before sequencing. \ The sequencing reads generated were mapped to the predicted ligation products. \ The number of sequences mapping to predicted junction fragments were tabulated from sequencing runs. \ The number of times a sequence was detected for a given interaction between a TSS and feature indicates the relative strength of the interation.\

    \ Gene-targeted project\

    \ Forward primers were\ designed to HindIII sites in a 230-415 kb sequence centered on the DNase I hypersensitive sites\ of interest. Reverse primers were designed to HindIII sites for all transcription starts extending\ 1 Mb on either side of the region targeted by the forward primer set. Matrix files are labeled by\ the coordinates of the region covered by the forward primer set. These experiments were done in a\ multiplex manner with the forward and reverse primers for all 25 regions mixed together in a single\ reaction. Two replicates were performed for 4 cell lines for 25 regions.\ High-throughput sequencing was performed on an ABI SOLiD instrument collecting 50 bp reads.\ The interaction files provided map all the reads in the output sequence without a mismatch threshold. \

    \ Myc project\

    \ Forward primers were designed\ to HindIII fragments of 4.29 Mb section of human chromosome 8 centered on the gene desert 5~R of the\ myc gene. Reverse primers were designed to all HindIII fragments containing refseq txStarts in a 7.6 Mb\ region extending > 2 Mb on either side of the forward primer set. \ High-throughput sequencing was performed on an ABI SOLiD instrument collecting 50 bp reads.\ The interaction files provided map all the reads in the output sequence without a mismatch threshold. \

    \ \

    Verification

    \ \

    \ Data were verified by sequencing biological replicates displaying correlation coefficient > 0.9. \

    \ \

    Credits

    \ \

    \ These data were generated by the University of Washington ENCODE Group.

    \ Contact: Richard Sandstrom\ \

    \ \

    References

    \ \

    \ Dekker J, Rippe K, Dekker M, Kleckner N.\ \ Capturing chromosome conformation.\ Science 2002 Feb 15;295(5558):1306-11.\

    \ \

    \ Dostie J, Richmond TA, Arnaout RA, Selzer RR, Lee WL, Honan TA, Rubio ED, Krumm A, Lamb J, Nusbaum C et al.\ \ Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.\ Genome Res 2006 Oct;16(10):1299-309.\

    \ \

    Data Release Policy

    \ \

    Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

    \ regulation 0 fileSortOrder cell=Cell_Line view=View replicate=Replicate region=Region dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
    Until\ group regulation\ longLabel Chromatin Interactions by 5C from ENCODE/University of Washington\ shortLabel UW 5C\ superTrack wgEncodeChromSuper dense\ track wgEncodeUw5C\ type downloadsOnly\ wgEncodeUwAffyExonArray UW Affy Exon bed 6 + Affymetrix Exon Array from ENCODE/University of Washington 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This track displays human tissue microarray data using\ Affymetrix Human Exon 1.0 GeneChip\ and was produced as part of the ENCODE Project. \ This track in the hg19 assembly is a continuation of the work displayed in\ the hg18 assembly with additional cell lines.\

    \ \

    Display Conventions and Configuration

    \ \

    \ The display for this track shows probe location and signal value\ as grayscale-colored items where higher\ signal values correspond to darker-colored blocks. Items with score of 1000\ are in the highest 10% quantile for signal value of that particular cell type.\ Similarly, items scoring 900 are the next 10% quantile and at the bottom of\ scale, items scoring 100 are in the lowest 10% quantile for signal value.\

    \

    The subtracks within this composite annotation track correspond to data from \ different cell types and tissues. The configuration options are \ shown at the top of the track description page, followed by a list of \ subtracks. \ To display only selected subtracks, uncheck the boxes next to the tracks you \ wish to hide.\

    \ For information regarding specific microarray probes, look under the \ "Expression" track group and turn on the\ Affy Exon Array track.\

    \

    Metadata for a particular subtrack can be found by clicking the down arrow\ in the list of subtracks.

    \ \

    Methods

    \ \

    \ Cells were grown according to the approved \ ENCODE cell culture protocols.\ A subset of the cells were stored frozen in RNAlater. For the WI-38 Tamoxifen-treated\ (4OHTAM_20nM_72hr)\ cell type, cells at 50-80% confluency were treated for 72 hours with 20 nM\ 4-hydroxytamoxifen in growth medium (from a 1000X working stock in absolute ethanol).\ At harvest, greater than 95% of DNA synthesis was inhibited and the cells had \ an induced fusiform/round morphology with greater than 95% showing dramatic\ senescence-associated heterochromatic foci. Total RNA was labeled and hybridized\ to Affymetrix Human Exon 1.0 ST V2 arrays using hg19 probesets. Exon and gene level\ expression analysis were carried out using Affymetrix ExACT 1.2.1 and Affymetrix\ Expression Console 1.1 software tools. Samples were quantile normalized for\ background correction and Probe Logarithmic Intensity Error summarized. \ More detailed methods are\ \ here.\

    \

    \ \

    Release Notes

    \ \

    \ This is release 4 (Jul 2012) of this track. A patch update has removed previously released\ K562 zinc-finger experiments due to a data merging issue. This update adds in H7-hESC cells that have been differentiated with different time courses.\ \

    \ \

    Verification

    \ \

    \ Data were verified by sequencing biological replicates displaying correlation\ coefficient of 0.9 or greater.\

    \ \

    Credits

    \ \

    These data were generated by the University of Washington ENCODE group.

    \

    Contact: Richard Sandstrom\ \

    \ \

    References

    \ \

    \ Hansen RS, Thomas S, Sandstrom R, Canfield TK, Thurman RE, Weaver M, Dorschner MO, Gartler SM, Stamatoyannopoulos JA.\ \ Sequencing newly replicated DNA reveals widespread plasticity in human replication timing.\ Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):139-44.\

    \ \

    Data Release Policy

    \ \

    Data users may freely use ENCODE data, but may not, without prior \ consent, submit publications that use an unpublished ENCODE dataset until \ nine months following the release of the dataset. This date is listed in \ the Restricted Until column, above. The full data release policy \ for ENCODE is available \ here.

    \ expression 1 boxedCfg on\ canPack On\ compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell treatment=treatment\ dimensions dimensionX=treatment dimensionY=cellType dimensionZ=rep\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line treatment=Treatment replicate=Rep dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
    Until\ filterComposite dimZ\ group expression\ html wgEncodeUwAffyExonArray.release4\ longLabel Affymetrix Exon Array from ENCODE/University of Washington\ priority 0\ shortLabel UW Affy Exon\ sortOrder cellType=+ rep=+\ subGroup1 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1K562=K562 (Tier_1) t2A549=A549 (Tier_2) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2MCF7=MCF-7 (Tier_2) t3AG04449=AG04449 t3AG04450=AG04450 t3AG09309=AG09309 t3AG09319=AG09319 t3AG10803=AG10803 t3AOAF=AoAF t3BE2C=BE2_C t3BJ=BJ t3CACO2=Caco-2 t3CMK=CMK t3GM06990=GM06990 t3GM12864=GM12864 t3GM12865=GM12865 t3H7HESC=H7-hESC t3HAC=HAc t3HAEPIC=HAEpiC t3HAH=HA-h t3HASP=HA-sp t3HBMEC=HBMEC t3HBVP=HBVP t3HBVSMC=HBVSMC t3HCF=HCF t3HCFAA=HCFaa t3HCM=HCM t3HCONF=HConF t3HCPEPIC=HCPEpiC t3HCT116=HCT-116 t3HEEPIC=HEEpiC t3HEK293=HEK293 t3HFF=HFF t3HFFMYC=HFF-Myc t3HGF=HGF t3HIPEPIC=HIPEpiC t3HL60=HL-60 t3HMEC=HMEC t3HMF=HMF t3HMVECDAD=HMVEC-dAd t3HMVECDBLAD=HMVEC-dBl-Ad t3HMVECDBLNEO=HMVEC-dBl-Neo t3HMVECDLYAD=HMVEC-dLy-Ad t3HMVECDLYNEO=HMVEC-dLy-Neo t3HMVECDNEO=HMVEC-dNeo t3HMVECLBL=HMVEC-LBl t3HMVECLLY=HMVEC-LLy t3HNPCEPIC=HNPCEpiC t3HPAEC=HPAEC t3HPAF=HPAF t3HPDLF=HPdLF t3HPF=HPF t3HRCEPIC=HRCEpiC t3HRE=HRE t3HRGEC=HRGEC t3HRPEPIC=HRPEpiC t3HSMM=HSMM t3HSMMTUBE=HSMMtube t3HVMF=HVMF t3JURKAT=Jurkat t3LNCAP=LNCaP t3NB4=NB4 t3NHA=NH-A t3NHBE=NHBE t3NHDFAD=NHDF-Ad t3NHDFNEO=NHDF-neo t3NHEK=NHEK t3NHLF=NHLF t3NT2D1=NT2-D1 t3PANC1=PANC-1 t3PREC=PrEC t3RPTEC=RPTEC t3SAEC=SAEC t3SKMC=SkMC t3SKNMC=SK-N-MC t3SKNSHRA=SK-N-SH_RA t3TH1=Th1 t3WERIRB1=WERI-Rb-1 t3WI38=WI-38\ subGroup2 rep Rep rep1=1 rep2=2\ subGroup3 treatment Treatment aNone=None OHTAM=4-OHTAM_20_nM_72_hr DIFFA2D=Differentiated_2_d DIFFA5D=Differentiated_5_d DIFFA9D=Differentiated_9_d DIFFA14D=Differentiated_14_d\ superTrack wgEncodeExonArraySuper dense\ track wgEncodeUwAffyExonArray\ type bed 6 +\ visibility hide\ wgEncodeUwTfbs UW CTCF Binding bed 3 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    This track was produced as part of the ENCODE Project.\ This track displays maps of genome-wide binding of the CTCF transcription factor in different \ cell lines\ using ChIP-seq high-throughput sequencing.\ \

    Display Conventions and Configuration

    \ \

    \ This track is a multi-view composite track that contains multiple data types\ (views). For each view, there are multiple subtracks that display\ individually on the browser. Instructions for configuring multi-view tracks\ are here.\

    \ For each cell type, this track contains the following views:\

    \
    HotSpots\
    ChIP-seq affinity zones identified using the HotSpot algorithm.\
    Peaks\
    ChIP-seq affinity sites identified as signal peaks within\ affinity zones (FDR 1.0%).\
    Raw Signal\
    The density of tags mapping within a 150 bp sliding window\ (at a 20 bp step across the genome).\
    \

    Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

    \ \

    Methods

    \ \

    \ Cells were grown according to the approved\ ENCODE cell culture protocols.\ Cells were crosslinked with 1% formaldehyde, and the reaction was quenched\ by the addition of glycine. Fixed cells were rinsed with PBS, lysed in nuclei\ lysis buffer, and the chromatin was sheared to 200-500 bp fragments using\ Fisher Dismembrator (model 500). Sheared chromatin fragments were\ immunoprecipitated with specific polyclonal antibodies at 4 °C\ with gentle rotation. Antibody-chromatin complexes were washed and eluted.\ The cross linking in immunoprecipitated DNA was reversed and treated with\ RNase-A. Following proteinase K treatment, the DNA fragments were purified\ by phenol-chloroform-isoamyl alcohol extraction and ethanol precipitation.\ A quantity of 20-50 ng of ChIP DNA was end-repaired, adenine ligated to Illumina adapters was added, and a\ Solexa library was made for sequencing.\

    \ ChIP-seq affinity was directly measured through\ raw tag density (Raw Signal), which is shown in the track as density of tags\ mapping within a 150 bp sliding window (at a 20 bp step across the genome).\ ChIP-seq affinity zones (HotSpots) were identified using the\ HotSpot algorithm described in Sabo et al. (2004);\ 1.0% false discovery rate thresholds (FDR 0.01) were computed for each cell type by\ applying the HotSpot algorithm to an equivalent number of random\ uniquely mapping 36mers. ChIP-seq affinities (Peaks)\ were identified as signal peaks within affinity\ zones (FDR 1.0%) using a peak-finding algorithm.\

    \

    \ All tracks have a False Discovery Rate of 1% (FDR 1.0%).\

    \ \

    Verification

    \ \

    \ Data were verified by sequencing biological replicates displaying correlation\ coefficients > 0.9.\

    \ \

    Release Notes

    \ \

    \ Release 3 (February 2012) contains 3 new experiments. \

    \ \

    Credits

    \ \

    These data were generated by the UW ENCODE group.

    \

    Contact: Richard Sandstrom\ \

    \ \

    References

    \ \

    \ Sabo PJ, Hawrylycz M, Wallace JC, Humbert R, Yu M, Shafer A, Kawamoto J, Hall R, Mack J, Dorschner MO et al.\ \ Discovery of functional noncoding elements by digital analysis of chromatin structure.\ Proc Natl Acad Sci U S A. 2004 Nov 30;101(48):16837-42.\

    \ \

    Data Release Policy

    \ \

    Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

    \ regulation 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell factor=antibody\ dimensionZchecked rep1,rep2\ dimensions dimensionX=factor dimensionY=cellType dimensionZ=rep\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line antibody=Antibody
    Target replicate=Rep view=View controlId=Control_ID origAssembly=Assembly
    originally
    mapped
    to dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
    Until\ group regulation\ html wgEncodeUwTfbs.release3\ longLabel CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington\ noInherit on\ priority 0\ shortLabel UW CTCF Binding\ sortOrder cellType=+ factor=+ rep=+ view=+\ subGroup1 view Views Hot=Hotspots Peaks=Peaks zRSig=Raw_Signal\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1K562=K562 (Tier_1) t2A549=A549 (Tier_2) t2BCELLSCD20RO01778=B_cells_CD20+_RO01778 (Tier_2) t2BCELLSCD20RO01794=B_cells_CD20+_RO01794 (Tier_2) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2MCF7=MCF-7 (Tier_2) t2MONOCYTESCD14RO01746=Monocytes_CD14+_RO01746 (Tier_2) t3AG04449=AG04449 t3AG04450=AG04450 t3AG09309=AG09309 t3AG09319=AG09319 t3AG10803=AG10803 t3AOAF=AoAF t3BE2C=BE2_C t3BJ=BJ t3CACO2=Caco-2 t3GM06990=GM06990 t3GM12801=GM12801 t3GM12864=GM12864 t3GM12865=GM12865 t3GM12872=GM12872 t3GM12873=GM12873 t3GM12874=GM12874 t3GM12875=GM12875 t3H7HESC=H7-hESC t3HAC=HAc t3HASP=HA-sp t3HBMEC=HBMEC t3HCF=HCF t3HCFAA=HCFaa t3HCM=HCM t3HCPEPIC=HCPEpiC t3HCT116=HCT-116 t3HEEPIC=HEEpiC t3HEK293=HEK293 t3HFF=HFF t3HFFMYC=HFF-Myc t3HL60=HL-60 t3HMEC=HMEC t3HMF=HMF t3HPAF=HPAF t3HPF=HPF t3HRE=HRE t3HRPEPIC=HRPEpiC t3HVMF=HVMF t3JURKAT=Jurkat t3LNCAP=LNCaP t3NB4=NB4 t3NHDFNEO=NHDF-neo t3NHEK=NHEK t3NHLF=NHLF t3PANC1=PANC-1 t3RPTEC=RPTEC t3SAEC=SAEC t3SKMC=SkMC t3SKNMC=SK-N-MC t3SKNSHRA=SK-N-SH_RA t3WERIRB1=WERI-Rb-1 t3WI38=WI-38\ subGroup3 treatment Treatment aNone=None DIFFA2D=diffProtA_2d DIFFA5D=diffProtA_5d DIFFA9D=diffProtA_9d OHTAM=OH-tamoxifen_20nM\ subGroup4 factor Factor CTCF=CTCF zInput=Input\ subGroup5 rep Replicate rep1=1 rep2=2 rep3=3\ superTrack wgEncodeTfBindingSuper hide\ track wgEncodeUwTfbs\ type bed 3\ wgEncodeUwDgf UW DNaseI DGF bed 3 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington 1 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    This track, produced as part of the ENCODE Project, contains deep sequencing DNase data\ that will be used to identify sites where regulatory factors bind to the genome\ (footprints).

    \

    Footprinting is a technique used to define the DNA sequences that interact\ with and bind DNA-binding proteins, such as transcription factors,\ zinc-finger proteins, hormone-receptor complexes, and other \ chromatin-modulating factors like CTCF. The technique depends upon the\ strength and tight nature of protein-DNA interactions. In their native chromatin\ state, DNA sequences that interact directly with DNA-binding proteins are\ relatively protected from DNA-degrading endonucleases, while the exposed/unbound\ portions are readily degraded by such endonucleases. A massively parallel\ next-generation sequencing technique to define the DNase hypersensitive sites\ in the genome was adopted. The DNase samples were sequenced using next-generation\ sequencing machines to significantly higher depths of 300-fold or greater. This produces\ a base-pair level resolution of the DNase susceptibility maps of the native\ chromatin state. These base-pair resolution maps represent and are dependent\ upon the nature and the specificity of interaction of the DNA with the\ regulatory/modulatory proteins binding at specific loci in the genome; thus\ they represent the native chromatin state of the genome under investigation.\ The deep sequencing approach has been used to define the footprint landscape of\ the genome by identifying DNA motifs that interact with known or novel DNA-binding proteins.\

    \ \

    Display Conventions and Configuration

    \ \

    \ This track is a multi-view composite track that contains multiple data types\ (views). For each view, there are multiple subtracks that display\ individually on the browser. Instructions for configuring multi-view tracks\ are here.\

    \ For each cell type, this track contains the following views:\

    \
    HotSpots\
    DNaseI hypersensitive zones identified using the HotSpot algorithm.\
    Peaks\
    DNaseI hypersensitive sites (DHSs) identified as signal peaks within \ FDR 1.0% hypersensitive zones.\ \
    Signal\
    Per-base count of sequence reads whose 5' end (corresponding to a \ DNaseI-induced DNA cut) coincides with the given position.\ \
    Raw Signal\
    The density of tags mapping within a 150 bp sliding window\ (at a 20 bp step across the genome).\
    \ NOTE: The names of the signal views in this track are reversed from conventions used in\ other ENCODE tracks, where the less processed signal is termed 'Raw'.\

    \

    DNaseI sensitivity is shown as the absolute density of in vivo \ cleavage sites across the genome mapped using the Digital DNaseI methodology \ (see below). \

    \ \

    Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

    \ \ \

    Methods

    \ \ Cells were grown according to the approved ENCODE cell culture\ protocols. Digital DNaseI was performed by DNaseI digestion of\ intact nuclei, followed by isolation of DNaseI 'double-hit' fragments as\ described in Sabo et al. (2006), and direct sequencing of\ fragment ends (which correspond to in vivo DNaseI cleavage\ sites) using the Solexa platform (27 bp reads). High-quality reads were\ mapped to the GRCh37/hg19 human genome using Bowtie 0.12.5 \ (Eland was used to map to NCBI36/hg18);\ only unique mappings were kept. DNaseI sensitivity is directly reflected \ in raw tag density (Signal), which is shown\ in the track as density of tags mapping within a 150 bp sliding window\ (at a 20 bp step across the genome). DNaseI hypersensitive zones\ (HotSpots) were identified using the HotSpot algorithm\ described in Sabo et al. (2004). False discovery rate thresholds \ of 1.0% (FDR 1.0%) were computed for each cell type by applying\ the HotSpot algorithm to an equivalent number of random uniquely\ mapping 36-mers. DNaseI hypersensitive sites (DHSs or Peaks)\ were identified as signal peaks within 1.0% (FDR 1.0%) hypersensitive zones\ using a peak-finding algorithm. Only DNase Solexa libraries from unique\ cell types producing the highest quality data, as defined by Percent\ Tags in Hotspots (PTIH ~40%), were designated for deep sequencing to a depth\ of over 200 million tags. \ \ \

    \ \

    Verification

    \ \

    \ Results were validated by \ conventional DNaseI hypersensitivity assays using end-labeling/Southern \ blotting methods. \

    \

    Images and their associated mappings can be found in the supplemental data. \ \

    Release Notes

    \ \

    \ This is Release 4 (August 2012) of this track, which includes 10 new experiments across 8 cell lines.\

    \

    \ A number of previously released Peaks have been replaced by updated versions.\ The affected database tables and files include 'V2' in the name, and metadata is marked with "submittedDataVersion=V2",\ followed by the reason for replacement, "Fixed bug in peak calls that artificially reduced the number of peaks".\

    \

    \ Previous versions of files are available for download from the\ FTP site.\

    \ \

    Credits

    \ \

    These data were generated by the UW ENCODE group.

    \

    Contact: \ Richard Sandstrom\ \

    \ \

    References

    \ \

    \ Sabo PJ, Hawrylycz M, Wallace JC, Humbert R, Yu M, Shafer A, Kawamoto J, Hall R, Mack J, Dorschner MO et al.\ \ Discovery of functional noncoding elements by digital analysis of chromatin structure.\ Proc Natl Acad Sci U S A. 2004 Nov 30;101(48):16837-42.\

    \ \

    \ Sabo PJ, Kuehn MS, Thurman R, Johnson BE, Johnson EM, Cao H, Yu M, Rosenzweig E, Goldy J, Haydock A et al.\ \ Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.\ Nat Methods. 2006 Jul;3(7):511-8.\

    \ \

    Data Release Policy

    \ \ Data users may freely use ENCODE data, but may not, without prior consent, submit publications that use an unpublished ENCODE dataset until nine months following the release of the dataset. This date is listed in the Restricted Until column, above.\ The full data release policy for ENCODE is available here.\ regulation 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell treatment=treatment\ dataVersion ENCODE July 2012 Freeze\ dimensions dimensionY=cellType dimensionX=treatment\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line view=View origAssembly=Original_Assembly dccAccession=UCSC_Accession geoSampleAccession=GEO_Sample
    Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
    Until\ group regulation\ html wgEncodeUwDgf.release4\ longLabel DNaseI Digital Genomic Footprinting from ENCODE/University of Washington\ noInherit on\ shortLabel UW DNaseI DGF\ sortOrder cellType=+ view=+\ subGroup1 view Views Hotspots=Hotspots Peaks=Peaks Signal=Signal zRaw=Raw_Signal\ subGroup2 cellType Cell_Line t1K562=K562 (Tier_1) t2A549=A549 (Tier_2) t2BCELLSCD20RO01778=B_cells_CD20+_RO01778 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2LHCNM2=LHCN-M2 (Tier_2) t3AG10803=AG10803 t3AOAF=AoAF t3CD4NAIVEWB11970640=CD4+_Naive_Wb11970640 t3GM06990=GM06990 t3GM12865=GM12865 t3H7HESC=H7-hESC t3HAAH=HA-h t3HAASP=HA-sp t3HAEPIC=HAEpiC t3HCF=HCF t3HCFAA=HCFaa t3HCM=HCM t3HCPEPIC=HCPEpiC t3HEEPIC=HEEpiC t3HFF=HFF t3HGF=HGF t3HIPEPIC=HIPEpiC t3HMF=HMF t3HMVECDBLAD=HMVEC-dBl-Ad t3HMVECDBLNEO=HMVEC-dBl-Neo t3HMVECDLYNEO=HMVEC-dLy-Neo t3HMVECLBL=HMVEC-LBl t3HMVECLLY=HMVEC-LLy t3HPAF=HPAF t3HPDLF=HPdLF t3HPF=HPF t3HRCEPIC=HRCEpiC t3HSMM=HSMM t3HVMF=HVMF t3M059J=M059J t3NB4=NB4 t3NHA=NH-A t3NHDFAD=NHDF-Ad t3NHDFNEO=NHDF-neo t3NHLF=NHLF t3RPMI7951=RPMI-7951 t3SAEC=SAEC t3SKANSHRA=SK-N-SH_RA t3SKMC=SkMC t3T47D=T-47D t3TH01=Th1 t3TH01WB33676984=Th1_Wb33676984 t3TH02=Th2 t3TH02WB54553204=Th2_Wb54553204 t3TH17=Th17 t3TREGWB78495824=Treg_Wb78495824\ subGroup3 treatment Treatment aNONE=None DIFF4D=DIFF_4_d\ subGroup4 rep Replicate rep1=rep1 rep2=rep2\ superTrack wgEncodeDNAseSuper dense\ track wgEncodeUwDgf\ type bed 3\ wgEncodeUwDnase UW DNaseI HS bed 3 + DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington 1 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    This track was produced as part of the ENCODE Project.\ This track shows DNaseI sensitivity measured genome-wide in different\ cell lines\ using the Digital DNaseI methodology (see below) and DNaseI hypersensitive\ sites.\ DNaseI has long been used to map general chromatin accessibility and\ DNaseI hypersensitivity is a universal feature of active\ cis-regulatory sequences. The use of this method has led\ to the discovery of functional regulatory elements that include enhancers,\ insulators, promoters, locus control regions and novel elements.\ For each experiment (cell type), this track shows DNaseI sensitivity as a\ continuous function using sequencing tag density (Raw Signal) \ and discrete loci of DNaseI sensitive zones (HotSpots) and\ hypersensitive sites (Peaks).\

    \ \

    Display Conventions and Configuration

    \ \

    \ This track is a multi-view composite track that contains multiple data types\ (views). For each view, there are multiple subtracks that display\ individually on the browser. Instructions for configuring multi-view tracks\ are here.\

    \

    \ For each cell type, this track contains the following views:\

    \
    HotSpots
    \
    DNaseI sensitive zones identified using the HotSpot algorithm.
    \
    Peaks
    \
    DNaseI hypersensitive sites (DHSs) identified as signal peaks within\ FDR 1.0% hypersensitive zones.
    \
    Raw Signal
    \
    The density of tags mapping within a 150 bp sliding window\ (at a 20 bp step across the genome).
    \
    \

    \

    DNaseI sensitivity is shown as the absolute density of in vivo\ cleavage sites across the genome mapped using the Digital DNaseI methodology\ (see below). \

    \

    Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

    \ \

    Methods

    \ \

    \ Cells were grown according to the approved\ ENCODE cell culture protocols.\ Digital DNaseI was performed by DNaseI digestion of intact\ nuclei, isolation of DNaseI 'double-hit' fragments as described in\ Sabo et al. (2006), and direct sequencing of fragment\ ends (which correspond to in vivo DNaseI cleavage sites)\ using the Illumina Geneome Analyzer II platform (36 bp reads). Uniquely mapping high-quality reads\ were mapped to the genome. DNaseI sensitivity is directly reflected in\ raw tag density (Raw Signal), which is shown in the track as density of tags\ mapping within a 150 bp sliding window (at a 20 bp step across the genome).\ DNaseI sensitive zones (HotSpots) were identified using the\ HotSpot algorithm\ described in Sabo et al. (2004). False discovery rate thresholds of 1.0% (FDR 1.0%) were computed\ for each cell type by applying the HotSpot algorithm to an equivalent number of random\ uniquely mapping 36mers. DNaseI hypersensitive sites (DHSs or Peaks)\ were identified as signal peaks within FDR 1.0% hypersensitive\ zones using a peak-finding algorithm.

    \ \

    Verification

    \ \

    Data were verified by sequencing biological replicates displaying a \ correlation coefficient > 0.9. Results were extensively validated by\ conventional DNaseI hypersensitivity assays using end-labeling/Southern\ blotting methods.

    \ \

    Release Notes

    \ \

    \ This is release 6 (July 2012) of this track. It includes 11 new experiments across 12 new cell lines: bone marrow HS27a, bone marrow HS5, bone marrow MSC, CD4+ Naive Wb11970640, \ CD4+ Naive Wb78495824, Th17, Th1 Wb33676984, Th1 Wb54553204, Th2 Wb33676984, Th2 Wb54553204, Treg Wb78495824, Treg Wb83319432.\ This release also removes previously release K562 zinc-finger experiments. There are questions concerning the data due to a merging issue.\

    \ \

    \ \

    Credits

    \ \

    These data were generated by the UW ENCODE group.

    \

    Contact: \ Richard Sandstrom\ \

    \ \

    References

    \ \

    \ Sabo PJ, Hawrylycz M, Wallace JC, Humbert R, Yu M, Shafer A, Kawamoto J, Hall R, Mack J, Dorschner MO et al.\ \ Discovery of functional noncoding elements by digital analysis of chromatin structure.\ Proc Natl Acad Sci U S A. 2004 Nov 30;101(48):16837-42.\

    \ \

    \ Sabo PJ, Kuehn MS, Thurman R, Johnson BE, Johnson EM, Cao H, Yu M, Rosenzweig E, Goldy J, Haydock A et al.\ \ Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.\ Nat Methods. 2006 Jul;3(7):511-8.\

    \ \

    Data Release Policy

    \ \

    Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

    \ regulation 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell treatment=treatment\ dataVersion ENCODE July 2012 Freeze\ dimensions dimensionY=cellType dimensionX=treatment dimensionZ=rep\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line treatment=Treatment replicate=Rep view=View origAssembly=Assembly
    originally
    mapped
    to dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
    Until\ filterComposite dimZ\ group regulation\ html wgEncodeUwDnase.release6\ longLabel DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington\ noInherit on\ shortLabel UW DNaseI HS\ sortOrder cellType=+ rep=+ view=+\ subGroup1 view Views Hot=HotSpots Peaks=Peaks zRSig=Raw_Signal\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1H1HESC=H1-hESC (Tier_1) t1K562=K562 (Tier_1) t2A549=A549 (Tier_2) t2BCELLSCD20RO01778=B_cells_CD20+_RO01778 (Tier_2) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2LHCNM2=LHCN-M2 (Tier_2) t2MCF7=MCF-7 (Tier_2) t2MONOCYTESCD14RO01746=Monocytes_CD14+_RO01746 (Tier_2) t3AG04449=AG04449 t3AG04450=AG04450 t3AG09309=AG09309 t3AG09319=AG09319 t3AG10803=AG10803 t3AOAF=AoAF t3BE2C=BE2_C t3BJ=BJ t3BONEMARROWHS5=Bone_Marrow_HS5 t3BONEMARROWHS27A=Bone_Marrow_HS27a t3BONEMARROWMSC=Bone_Marrow_MSC t3CACO2=Caco-2 t3CD04NAIVEWB11970640=CD4+_Naive_Wb11970640 t3CD04NAIVEWB78495824=CD4+_Naive_Wb78495824 t3CD34MOBILIZED=CD34+_Mobilized t3CMK=CMK t3GM04503=GM04503 t3GM04504=GM04504 t3GM06990=GM06990 t3GM12864=GM12864 t3GM12865=GM12865 t3H7HESC=H7-hESC t3HAAH=HA-h t3HAASP=HA-sp t3HAC=HAc t3HAEPIC=HAEpiC t3HBMEC=HBMEC t3HBVP=HBVP t3HBVSMC=HBVSMC t3HCF=HCF t3HCFAA=HCFaa t3HCM=HCM t3HCONF=HConF t3HCPEPIC=HCPEpiC t3HCT116=HCT-116 t3HEEPIC=HEEpiC t3HFF=HFF t3HFFMYC=HFF-Myc t3HGF=HGF t3HIPEPIC=HIPEpiC t3HL60=HL-60 t3HMEC=HMEC t3HMF=HMF t3HMVECDAD=HMVEC-dAd t3HMVECDBLAD=HMVEC-dBl-Ad t3HMVECDBLNEO=HMVEC-dBl-Neo t3HMVECDLYAD=HMVEC-dLy-Ad t3HMVECDLYNEO=HMVEC-dLy-Neo t3HMVECDNEO=HMVEC-dNeo t3HMVECLBL=HMVEC-LBl t3HMVECLLY=HMVEC-LLy t3HNPCEPIC=HNPCEpiC t3HPAEC=HPAEC t3HPAF=HPAF t3HPDLF=HPdLF t3HPF=HPF t3HRCEPIC=HRCEpiC t3HRE=HRE t3HRGEC=HRGEC t3HRPEPIC=HRPEpiC t3HSMM=HSMM t3HSMMTUBE=HSMMtube t3HVMF=HVMF t3JURKAT=Jurkat t3LNCAP=LNCaP t3M059J=M059J t3NB4=NB4 t3NHA=NH-A t3NHBERA=NHBE_RA t3NHDFAD=NHDF-Ad t3NHDFNEO=NHDF-neo t3NHEK=NHEK t3NHLF=NHLF t3NT2D1=NT2-D1 t3PANC1=PANC-1 t3PREC=PrEC t3RPMI7951=RPMI-7951 t3RPTEC=RPTEC t3SAEC=SAEC t3SKNMC=SK-N-MC t3SKNSHRA=SK-N-SH_RA t3SKZMC=SkMC t3T47D=T-47D t3TH01=Th1 t3TH01WB33676984=Th1_Wb33676984 t3TH01WB54553204=Th1_Wb54553204 t3TH02=Th2 t3TH02WB33676984=Th2_Wb33676984 t3TH02WB54553204=Th2_Wb54553204 t3TH17=Th17 t3TREGWB78495824=Treg_Wb78495824 t3TREGWB83319432=Treg_Wb83319432 t3WERIRB1=WERI-Rb-1 t3WI38=WI-38\ subGroup3 rep Replicate rep1=1 rep2=2\ subGroup4 treatment Treatment None=None OHTAM=4-OHTAM_20_nM_72_hr DIFF4D=DIFF
    4_d DIFFA2D=diffProtA_2_d DIFFA5D=diffProtA_5_d DIFFA9D=diffProtA_9_d DIFFA14D=diffProtA_14_d EST100NM1H=Estradiol_100_nM
    1_hr ESTCTRL0H=Estradiol_Control
    0_hr\ superTrack wgEncodeDNAseSuper dense\ track wgEncodeUwDnase\ type bed 3 +\ wgEncodeUwHistone UW Histone bed 3 Histone Modifications by ChIP-seq from ENCODE/University of Washington 1 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    This track was produced as part of the ENCODE Project.\ This track displays genome-wide maps of histone modifications in different\ cell lines\ using ChIP-seq high-throughput sequencing.\ \

    Display Conventions and Configuration

    \ \

    \ This track is a multi-view composite track that contains multiple data types\ (views). For each view, there are multiple subtracks that display\ individually on the browser. Instructions for configuring multi-view tracks\ are here.\

    \ For each cell type, this track contains the following views:\

    \
    HotSpots\
    ChIP-seq affinity zones identified using the HotSpot algorithm.\
    Peaks\
    ChIP-seq affinity sites identified as signal peaks within\ FDR 1.0% affinity zones.\
    Raw Signal\
    The density of tags mapping within a 150 bp sliding window\ (at a 20 bp step across the genome).\
    \

    Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

    \ \

    Methods

    \ \

    \ Cells were grown according to the approved\ ENCODE cell culture protocols.\ Cells were cross-linked with 1% formaldehyde, and the reaction was quenched\ by the addition of glycine. Fixed cells were rinsed with PBS, lysed in nuclei\ lysis buffer, and the chromatin was sheared to 200-500 bp fragments using a\ Fisher Dismembrator (model 500). Sheared chromatin fragments were\ immunoprecipitated with specific polyclonal antibodies at 4 °C\ with gentle rotation. Antibody-chromatin complexes were washed and eluted.\ The cross-linking in the immunoprecipitated DNA was reversed and treated with\ RNase-A. Following proteinase K treatment, the DNA fragments were purified\ by phenol-chloroform-isoamyl alcohol extraction and ethanol precipitation.\ A quantity of 20-50 ng of ChIP DNA was end-repaired, followed by addition of adenine,\ ligation to Illumina adapters, and creation of a Solexa library for sequencing.\

    \ ChIP-seq affinity was directly measured through the\ raw tag density (Raw Signal), which is shown in the track as density of tags\ mapping within a 150 bp sliding window (at a 20 bp step across the genome).\ ChIP-seq affinity zones (HotSpots) were identified using the\ HotSpot algorithm described in Sabo et al. (2004).\ One percent false discovery rate thresholds (FDR 1.0%) were computed for each cell type by\ applying the HotSpot algorithm to an equivalent number of random\ uniquely mapping 36-mers. ChIP-Seq affinities (Peaks)\ were identified as signal peaks within FDR 1.0% hypersensitive\ zones using a peak-finding algorithm.\

    \

    \ All tracks have a False Discovery Rate of 1% (FDR 1.0%).\

    \ \

    Verification

    \ \

    \ Data were verified by sequencing biological replicates displaying a correlation\ coefficient greater than 0.9.\

    \ \

    Release Notes

    \

    \ Release 5 (July 2012) of this track removes experiments with K562/Zinc finger knockouts and adds in some missing inputs.\

    \ \

    Credits

    \ \

    These data were generated by the UW ENCODE group.

    \

    Contact: Richard Sandstrom\ \

    \ \

    References

    \ \

    \ Sabo PJ, Hawrylycz M, Wallace JC, Humbert R, Yu M, Shafer A, Kawamoto J, Hall R, Mack J, Dorschner MO et al.\ \ Discovery of functional noncoding elements by digital analysis of chromatin structure.\ Proc Natl Acad Sci U S A. 2004 Nov 30;101(48):16837-42.\

    \ \

    Data Release Policy

    \ \

    \ Data users may freely use ENCODE data, but may not, without prior consent, submit publications that use an unpublished ENCODE dataset until nine months following the release of the dataset. This date is listed in the Restricted Until column, above. The full data release policy for ENCODE is available\ here.\

    \ regulation 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell factor=antibody treatment=treatment\ dimensionAchecked zNone\ dimensions dimensionX=factor dimensionY=cellType dimensionZ=rep dimA=treatment\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line treatment=Treatment replicate=Rep antibody=Factor view=View controlId=Control_ID origAssembly=Assembly
    originally
    mapped
    to dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
    Until\ filterComposite dimZ dimA\ group regulation\ html wgEncodeUwHistone.release5\ longLabel Histone Modifications by ChIP-seq from ENCODE/University of Washington\ noInherit on\ priority 0\ shortLabel UW Histone\ sortOrder cellType=+ factor=+ treatment=+ rep=+ view=+\ subGroup1 view Views Hot=Hotspots Peaks=Peaks zRSig=Raw_Signal\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1K562=K562 (Tier_1) t2A549=A549 (Tier_2) t2BCELLSCD20RO01778=B_cells_CD20+_RO01778 (Tier_2) t2BCELLSCD20RO01794=B_cells_CD20+_RO01794 (Tier_2) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2MCF7=MCF-7 (Tier_2) t2MONOCYTESCD14RO01746=Monocytes_CD14+_RO01746 (Tier_2) t3AG04449=AG04449 t3AG04450=AG04450 t3AG09309=AG09309 t3AG09319=AG09319 t3AG10803=AG10803 t3AOAF=AoAF t3BE2C=BE2_C t3BJ=BJ t3CACO2=Caco-2 t3GM06990=GM06990 t3GM12864=GM12864 t3GM12865=GM12865 t3GM12875=GM12875 t3H7HESC=H7-hESC t3HAC=HAc t3HASP=HA-sp t3HBMEC=HBMEC t3HCF=HCF t3HCFAA=HCFaa t3HCM=HCM t3HCPEPIC=HCPEpiC t3HCT116=HCT-116 t3HEEPIC=HEEpiC t3HEK293=HEK293 t3HFF=HFF t3HFFMYC=HFF-Myc t3HL60=HL-60 t3HMEC=HMEC t3HMF=HMF t3HPAF=HPAF t3HPF=HPF t3HRE=HRE t3HRPEPIC=HRPEpiC t3HVMF=HVMF t3JURKAT=Jurkat t3LNCAP=LNCaP t3NB4=NB4 t3NHDFNEO=NHDF-neo t3NHEK=NHEK t3NHLF=NHLF t3PANC1=PANC-1 t3RPTEC=RPTEC t3SAEC=SAEC t3SKMC=SkMC t3SKNMC=SK-N-MC t3SKNSHRA=SK-N-SH_RA t3WERIRB1=WERI-Rb-1 t3WI38=WI-38\ subGroup3 treatment Treatment zNone=None DIFFA02D=2_day_diff_protocol_A DIFFA05D=5_day_diff_protocol_A DIFFA09D=9_day_diff_protocol_A DIFFA14D=14_day_diff_protocol_A OHTAM=4-OHTAM_20_nM_72_hr ZNF2C10C5=ZNF_knockout_2C10_C5 ZNF4C50C4=ZNF_knockout_4C50_C4 ZNFA41C6=ZNF_knockout_A4.1-C6 ZNFF41B2=ZNF_knockout_F4.1-B2 ZNFP5=ZNF_knockout_P5\ subGroup4 factor Factor H3K04ME3=H3K4me3 H3K09ME3=H3K9me3 H3K27AC=H3K27ac H3K27ME3=H3K27me3 H3K36ME3=H3K36me3 zInput=Input\ subGroup5 rep Replicate rep1=1 rep2=2 rep3=3\ superTrack wgEncodeHistoneSuper dense\ track wgEncodeUwHistone\ type bed 3\ wgEncodeUwRepliSeq UW Repli-seq bed 3 Replication Timing by Repli-seq from ENCODE/University of Washington 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    This track is produced as part of the ENCODE Project.\ This track shows genome-wide assessment of DNA replication timing in\ cell lines\ using the sequencing-based "Repli-seq" methodology (see below).\ Replication timing is known to be an important feature for \ epigenetic control of gene expression that usually operates at a \ higher-order level than at the level of specific genes. \ For each experiment (cell line, replicate), \ replication timing was ascertained by the isolation and \ sequencing of newly replicated DNA from six cell cycle \ fractions: G1/G1b, S1, S2, S3, S4, G2 (six fraction profile). \ Replication patterns are visualized as a continuous \ function based on sequencing tag density (Percentage-normalized Signal) \ and as a wavelet-smoothed transform of the \ six fraction profile (Wavelet-smoothed Signal). \ Replication peaks corresponding to replication initiation \ zones (Peaks) and valleys corresponding to \ replication termination zones (Valleys) were \ determined from local maxima and minima, respectively, \ in the wavelet-smoothed signal data. A measure of relative copy \ number at each genomic location (Summed Densities) was \ determined by summing the normalized tag density values of each cell cycle fraction at that location (equals one replicated genome equivalent).\

    \ \

    Display Conventions and Configuration

    \ \

    \ This track is a multi-view composite track that contains multiple data types\ (views). For each view, there are multiple subtracks that display\ individually on the browser. Instructions for configuring multi-view tracks\ are here.\

    \

    \ For each cell type, this track contains the following views:\

    \
    Percentage-normalized Signal
    \
    Replication signal at 1 kb intervals as a percentage of normalized \ +/-25 kb tag densities for all cell cycle fractions (G1/G1b, S1, S2, S3, S4, G2).
    \
    Wavelet-smoothed Signal
    \
    Wavelet-smoothed transform of the six fraction profile that is a weighted average of the percentage-normalized signals such that earlier replication has higher values.
    \
    Peaks
    \
    Local maxima in the wavelet-smoothed signal data corresponding to replication initiation (replication origin) zones.
    \
    Valleys
    \
    Local minima in the wavelet-smoothed signal data corresponding to replication termination zones.
    \
    Summed Densities
    \
    A measure of relative copy number at each genomic location that is the sum of normalized tag densities for each cell cycle fraction.
    \
    \

    \ \

    Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

    \ \

    Methods

    \ \

    \ Cells were grown according to the approved\ ENCODE cell culture protocols.\ Repli-seq was performed as described by Hansen et al. (2010). \ Briefly, newly replicated DNA was labeled in vivo with a pulse of 5-bromo-2-deoxyuridine (BrdU), \ cells were fractionated into six different parts of the cell cycle by \ flow cytometry according to DNA content, cell cycle fractionated DNA was sonicated and \ an anti-BrdU monoclonal antibody was used to isolate the newly replicating DNA. Fragment ends \ were sequenced using the Illumina Genome Analyzer II or HiSeq platforms (36 bp reads). \ Some experiments (BJ, K562, BG02ES, GM06990) were originally performed and mapped to an \ earlier version of the human reference genome NCBI36/hg18 (Hansen et al., 2010) and were \ remapped to the more recent reference genome GRCh37/hg19.\

    \

    \ Uniquely mapping high-quality reads were mapped to the genome minus the Y chromosome. \ Replication signals within each six cell cycle fraction were derived from the density \ of sequence tags mapping within a 50 kb sliding window (stepped 1 kb across the genome); \ these densities were normalized to 4 million tags per genome. To avoid variation due to copy number \ or sequence bias, cell cycle-specific replication signals at each location were \ determined as a percentage of the sum of the six normalized tag density signals (Percentage-normalized Signal). \

    \ \

    \ To transform the six fraction replication signals into one \ track (Wavelet-smoothed Signal), \ the percentage-normalized signals at each location were used to calculate \ a weighted average value based on the average DNA content of each fraction according to \ flow cytometry [higher values correspond to earlier replication; formula=(0.917*G1b)+(0.750*S1)+(0.583*S2)+(0.417*S3)+(0.250*S4)+(0*G2)]. \ These weighted average data were smoothed by wavelet transformation [J7 level, corresponding to a scale of 128 kb; see Thurman et al. (2007)]. \

    \ \

    \ Replication initiation zones were flagged by determining local maxima in the wavelet-smoothed data \ (Peaks) and, similarly, replication termination zones were flagged by local minima (Valleys). \

    \ \

    \ The sum of the 4 million normalized replication tag densities \ correspond to replication of one genome and can, therefore, be used as a \ measure of relative genomic copy number (Summed Densities). This is useful \ for evaluation of unusual replication patterns, such as "biphasic"\ ones where replication has both early and late components [as described by Hansen et al. (2010)].\

    \ \

    Verification

    \ \

    Data were verified by determining replication time with a PCR-based examination of replication for particular \ loci in addition to sequencing biological replicates, as described by Hansen et al. (2010).

    \ \

    Credits

    \ \

    These data were generated by the UW ENCODE group.

    \

    Contact: \ Richard Sandstrom\ \

    \ \

    References

    \ \

    Hansen RS, Thomas S, Sandstrom R, Canfield TK, Thurman RE, Weaver M, Dorschner MO, Gartler SM, Stamatoyannopoulos JA.\ \ Sequencing newly replicated DNA reveals widespread plasticity in human replication timing.\ Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):139-44.\

    \ \

    Thurman RE, Day N, Noble WS, Stamatoyannopoulos JA.\ \ Identification of higher-order functional domains in the human ENCODE regions.\ Genome Res. 2007 Jun;17(6):917-27.\

    \ \

    Data Release Policy

    \ \

    Data users may freely use ENCODE data, but may not, without prior\ consent, submit publications that use an unpublished ENCODE dataset until\ nine months following the release of the dataset. This date is listed in\ the Restricted Until column, above. The full data release policy\ for ENCODE is available\ here.

    \ regulation 1 compositeTrack on\ controlledVocabulary encode/cv.ra cellType=cell phase=phase replicate=Rep view=view\ dimensions dimensionX=cellType dimensionY=rep\ dragAndDrop subTracks\ fileSortOrder cell=Cell_Line replicate=Rep phase=Phase view=View dccAccession=UCSC_Accession geoSampleAccession=GEO_Accession fileSize=Size fileType=File_Type dateSubmitted=Submitted dateUnrestricted=RESTRICTED
    Until\ group regulation\ longLabel Replication Timing by Repli-seq from ENCODE/University of Washington\ noInherit on\ priority 0\ shortLabel UW Repli-seq\ sortOrder cellType=+ rep=+ phase=+ view=+\ subGroup1 view Views v1PctSignal=Percentage-normalized_Signal v2Peaks=Peaks v3Valleys=Valleys v4WaveSignal=Wavelet-smoothed_Signal v5SumSignal=Summed_Densities\ subGroup2 cellType Cell_Line t1GM12878=GM12878 (Tier_1) t1K562=K562 (Tier_1) t2HELAS3=HeLa-S3 (Tier_2) t2HEPG2=HepG2 (Tier_2) t2HUVEC=HUVEC (Tier_2) t2IMR90=IMR90 (Tier_2) t2MCF7=MCF-7 (Tier_2) t2SKNSH=SK-N-SH (Tier_2) t3BG02ES=BG02ES t3BJ=BJ t3GM06990=GM06990 t3GM12801=GM12801 t3GM12812=GM12812 t3GM12813=GM12813 t3NHEK=NHEK\ subGroup3 phase Phase p1G1=G1 p1G1B=G1b p2S1=S1 p3S2=S2 p4S3=S3 p5S4=S4 p6G2=G2 zNONE=None\ subGroup4 rep Replicate rep1=1 rep2=2\ track wgEncodeUwRepliSeq\ type bed 3\ gnomADPextVagina Vagina bigWig 0 1 gnomAD pext Vagina 0 100 255 85 153 255 170 204 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/Vagina.bw\ color 255,85,153\ longLabel gnomAD pext Vagina\ parent gnomadPext off\ shortLabel Vagina\ track gnomADPextVagina\ visibility hide\ wgEncodeUwRepliSeqViewValleys Valleys bed 3 Replication Timing by Repli-seq from ENCODE/University of Washington 0 100 0 0 0 127 127 127 1 0 0 regulation 1 itemRgb on\ longLabel Replication Timing by Repli-seq from ENCODE/University of Washington\ parent wgEncodeUwRepliSeq\ shortLabel Valleys\ track wgEncodeUwRepliSeqViewValleys\ useScore 1\ view v3Valleys\ visibility hide\ varsInPubs Variants in Papers bed 3 Genetic Variants mentioned in scientific publications 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    The tracks that are listed here contain genetic variants and links to scientific publications that \ mention them. The Mastermind track was created by Genomenom, a company that analyzes fulltext \ of publications with their own proprietary software with an unknown false\ positive rate. The AVADA track was created in the Bejerano lab at\ Stanford by J. Birgmeier also on fulltext papers, using sophisticated machine learning\ methods and was evaluated to have a false positive rate of around 50% in their study.\

    \ For additional information please click on the hyperlink of the respective track above.\

    Display conventions

    \

    \ By default, each variant is labeled with the nucleotide change. Hover over the\ feature to see more information, explained on the track details page of the particular track\ or when clicking onto the feature.

    \

    Credits

    \

    \ For data provenance, access and descriptions, please click the documentation via the link above.\

    \ phenDis 1 group phenDis\ longLabel Genetic Variants mentioned in scientific publications\ shortLabel Variants in Papers\ superTrack on\ track varsInPubs\ type bed 3\ vegaGeneComposite Vega Genes genePred vegaPep Vega Annotations 0 100 0 0 0 127 127 127 0 0 31 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY,chr6_apd_hap1,chr6_cox_hap2,chr6_dbb_hap3,chr6_mann_hap4,chr6_mcf_hap5,chr6_qbl_hap6,chr6_ssto_hap7, http://vega.sanger.ac.uk/Homo_sapiens/transview?transcript=$$

    Description and Methods

    \

    \ This track shows gene annotations from the Vertebrate Genome Annotation (Vega)\ database. Annotations are divided into two subtracks from the \ Vega Human Genome Annotation project: \

      \
    • Vega Protein-Coding and Non-Coding Gene Annotations\
    • Vega Annotated Pseudogenes and Immunoglobulin Segments\
    \ \

    \ The following information is an excerpt from the\ \ Vertebrate Genome Annotation home page:

    \

    \ "The Vega database\ is designed to be a central repository for high-quality, frequently updated\ manual annotation of different vertebrate finished genome sequence.\ Vega attempts to present consistent high-quality curation of the published\ chromosome sequences. Finished genomic sequence is analysed on a\ clone-by-clone basis using\ a combination of similarity searches against DNA and protein databases\ as well as a series of ab initio gene predictions (GENSCAN, Fgenes).\ The annotation is based on supporting evidence only."

    \

    \ "In addition, comparative analysis using vertebrate datasets such as\ the Riken mouse cDNAs and Genoscope Tetraodon nigroviridis Ecores\ (Evolutionary Conserved Regions) are used for novel gene discovery."

    \

    \ \

    Display Conventions and Configuration

    \

    \ This track follows the display conventions for\ gene prediction\ tracks. Transcript\ type (and other details) may be found by clicking on the transcript\ identifier which forms the outside link to the Vega transcript details page.\ Further information on the gene and transcript classification may be found\ here.\

    \ \

    Credits

    \

    \ Thanks to Steve Trevanion at the\ \ Wellcome Trust Sanger Institute \ for providing the GTF and FASTA files for the Vega annotations. Vega \ acknowledgements and publications are listed \ here.\ genes 1 chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY,chr6_apd_hap1,chr6_cox_hap2,chr6_dbb_hap3,chr6_mann_hap4,chr6_mcf_hap5,chr6_qbl_hap6,chr6_ssto_hap7\ compositeTrack on\ group genes\ longLabel Vega Annotations\ shortLabel Vega Genes\ track vegaGeneComposite\ type genePred vegaPep\ url http://vega.sanger.ac.uk/Homo_sapiens/transview?transcript=$$\ urlLabel Vega Transcript:\ visibility hide\ uMassBrainHistoneViewPeaks View Peaks bed 3 Brain Histone H3K4me3 ChIP-Seq from Univ. Mass. Medical School (Akbarian/Weng) 3 100 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Brain Histone H3K4me3 ChIP-Seq from Univ. Mass. Medical School (Akbarian/Weng)\ parent uMassBrainHistone\ shortLabel View Peaks\ track uMassBrainHistoneViewPeaks\ useScore 1\ view Peaks\ visibility pack\ uMassBrainHistoneViewSignal View Signal bed 3 Brain Histone H3K4me3 ChIP-Seq from Univ. Mass. Medical School (Akbarian/Weng) 2 100 0 0 0 127 127 127 0 0 0 regulation 1 autoScale off\ configurable on\ longLabel Brain Histone H3K4me3 ChIP-Seq from Univ. Mass. Medical School (Akbarian/Weng)\ maxHeightPixels 100:50:16\ parent uMassBrainHistone\ shortLabel View Signal\ track uMassBrainHistoneViewSignal\ view Signal\ viewLimits 0:50\ visibility full\ windowingFunction maximum\ vistaEnhancersBb VISTA Enhancers bigBed 9 + VISTA Enhancers 0 100 0 0 0 127 127 127 0 0 0 https://enhancer.lbl.gov/cgi-bin/imagedb3.pl?form=presentation&show=1&organism_id=1&experiment_id=$

    Description

    \ \

    This track shows potential enhancers whose activity was experimentally validated in transgenic\ mice. Most of these noncoding elements were selected for testing based on their extreme conservation\ in other vertebrates or epigenomic evidence (ChIP-Seq) of putative enhancer marks. More information\ can be found on the VISTA Enhancer Browser\ page.\

    \ \

    Display Conventions and Configuration

    \

    Items appearing in red (positive) indicate that a reproducible\ pattern was observed in the in vivo enhancer assay. Items appearing in\ blue (negative) indicate that NO reproducible pattern was observed\ in the in vivo enhancer assay. Note that this annotation refers only to the single developmental\ timepoint that was tested in this screen (e11.5) and does not exclude the possibility that this\ region is a reproducible enhancer active at earlier or later timepoints in development.\

    \ \

    Methods

    \

    Excerpted from the Vista Enhancer Mouse Enhancer Screen Handbook and Methods page at the Lawrence Berkeley\ National Laboratory (LBNL) website:\

    Enhancer Candidate Identification

    \

    Most enhancer candidate sequences are identified by extreme evolutionary sequence conservation or\ by ChIP-seq. Detailed information related to enhancer identification by extreme evolutionary\ conservation can be found in the following publications:\

    \ \ \

    Detailed information related to enhancer identification by ChIP-seq can be found in the\ following publications:

    \

    \ \

    See the Transgenic Mouse Assay section for experimental procedures that were used to perform the\ transgenic assays: Mouse Enhancer Screen Handbook and Methods \ \

    UCSC converted the\ Experimental Data for hg19 and mm9 into bigBed format using the bedToBigBed\ utility. The data for hg38 was lifted over from hg19. The data for mm10 and mm39 were lifted over\ from mm9.

    \ \

    Data Access

    \

    \ VISTA Enhancers data can be explored interactively with the\ Table Browser and cross-referenced with the\ Data Integrator. For programmatic access, the track can be\ accessed using the Genome Browser's REST API. ReMap\ annotations can be downloaded from the Genome Browser's\ download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

    \ \

    Credits

    \

    Thanks to the Lawrence Berkeley National Laboratory for providing this data

    \ \ \

    References

    \

    \ Visel A, Minovitsky S, Dubchak I, Pennacchio LA.\ \ VISTA Enhancer Browser--a database of tissue-specific human enhancers.\ Nucleic Acids Res. 2007 Jan;35(Database issue):D88-92.\ PMID: 17130149; PMC: PMC1716724\

    \ regulation 1 bigDataUrl /gbdb/hg19/vistaEnhancers/vistaEnhancers.bb\ group regulation\ itemRgb on\ longLabel VISTA Enhancers\ shortLabel VISTA Enhancers\ track vistaEnhancersBb\ type bigBed 9 +\ url https://enhancer.lbl.gov/cgi-bin/imagedb3.pl?form=presentation&show=1&organism_id=1&experiment_id=$\ urlLabel View on the VISTA Enhancer Browser\ wgEncodeUwRepliSeqViewWaveSignal Wavelet-smoothed Signal bed 3 Replication Timing by Repli-seq from ENCODE/University of Washington 2 100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Replication Timing by Repli-seq from ENCODE/University of Washington\ maxHeightPixels 128:64:11\ parent wgEncodeUwRepliSeq\ shortLabel Wavelet-smoothed Signal\ track wgEncodeUwRepliSeqViewWaveSignal\ view v4WaveSignal\ viewLimits -10:100\ visibility full\ windowingFunction mean+whiskers\ pubsBingBlat Web Sequences bed 12 + DNA Sequences in Web Pages Indexed by Bing.com / Microsoft Research 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    This track is powered by Bing! and Microsoft Research. UCSC collaborators at\ Microsoft Research (Bob Davidson, David Heckerman) implemented a DNA sequence\ detector and processed thirty days of web crawler updates, which covers\ roughly 40 billion webpages. The results were mapped with BLAT to the genome.

    \ \

    Display Convention and Configuration

    \

    The track indicates the location of sequences on web pages\ mapped to the genome, labelled with the web page URL. If the web page includes\ invisible meta data, then the first author and a year of publication \ is shown instead of the URL. All\ matches of one web page are grouped ("chained") together.\ Web page titles are shown when you move the mouse cursor over the features.\ Thicker parts of the features (exons) represent matching sequences,\ connected by thin lines to matches from the same web page within 30 kbp.

    \ \ \ \

    Methods

    \

    \ All file types (PDFs and various Microsoft Office formats) were converted to\ text. The results were processed to find groups of words that look like DNA/RNA\ sequences. These were then mapped with BLAT to the human genome using the same\ software as used in the Publication track.

    \ \

    Credits

    \

    DNA sequence detection by Bob Davidson at Microsoft Research. \ HTML parsing and sequence mapping by Maximilian Haeussler at UCSC.

    \ \

    References

    \ \

    \ Aerts S, Haeussler M, van Vooren S, Griffith OL, Hulpiau P, Jones SJ, Montgomery SB, Bergman CM, Open Regulatory Annotation Consortium.\ \ Text-mining assisted regulatory annotation.\ Genome Biol. 2008;9(2):R31.\ PMID: 18271954; PMC: PMC2374703\

    \ \

    \ Haeussler M, Gerner M, Bergman CM.\ \ Annotating genes and genomes with DNA sequences extracted from biomedical articles.\ Bioinformatics. 2011 Apr 1;27(7):980-6.\ PMID: 21325301; PMC: PMC3065681\

    \ \

    \ Van Noorden R.\ \ Trouble at the text mine.\ Nature. 2012 Mar 7;483(7388):134-5.\

    \ phenDis 1 configurable off\ configureByPopup off\ group phenDis\ longLabel DNA Sequences in Web Pages Indexed by Bing.com / Microsoft Research\ nextExonText Next Match\ prevExonText Prev Match\ pubsArticleTable hgFixed.pubsBingArticle\ pubsMarkerTable hgFixed.pubsBingMarkerAnnot\ pubsPslTrack pubsBingBlatPsl\ pubsSequenceTable hgFixed.pubsBingSequenceAnnot\ shortLabel Web Sequences\ track pubsBingBlat\ type bed 12 +\ visibility hide\ gnomADPextWholeBlood Whole Blood bigWig 0 1 gnomAD pext Whole Blood 0 100 255 0 187 255 127 221 0 0 0 varRep 0 bigDataUrl /gbdb/hg19/gnomAD/pext/WholeBlood.bw\ color 255,0,187\ longLabel gnomAD pext Whole Blood\ parent gnomadPext off\ shortLabel Whole Blood\ track gnomADPextWholeBlood\ visibility hide\ windowmaskerSdust WM + SDust bed 3 Genomic Intervals Masked by WindowMasker + SDust 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This track depicts masked sequence as determined by\ WindowMasker. The\ WindowMasker tool is included in the NCBI C++ toolkit. The source code\ for the entire toolkit is available from the NCBI\ \ FTP site.\

    \ \

    Methods

    \ \

    \ To create this track, WindowMasker was run with the following parameters:\ 

    \
windowmasker -mk_counts true -input hg19.fa -output wm_counts\
windowmasker -ustat wm_counts -sdust true -input hg19.fa -output repeats.bed\
    \ The repeats.bed (BED3) file was loaded into the "windowmaskerSdust" table for\ this track.\

    \ \

    References

    \ \

    \ Morgulis A, Gertz EM, Schäffer AA, Agarwala R.\ WindowMasker: window-based masker for sequenced genomes.\ Bioinformatics. 2006 Jan 15;22(2):134-41.\ PMID: 16287941\

    \ rep 1 group rep\ longLabel Genomic Intervals Masked by WindowMasker + SDust\ shortLabel WM + SDust\ track windowmaskerSdust\ type bed 3\ visibility hide\ pseudoYale60 Yale Pseudo60 genePred Yale Pseudogenes based on Ensembl Release 60 0 100 0 0 0 127 127 127 1 0 0 http://tables.pseudogene.org/index.cgi?table=Human60&value=$$

    Description

    \ \

    \ This track shows pseudogenes identified by the Yale Pseudogene Pipeline.\ Pseudogenes are defined in this analysis as genomic sequences that are\ similar to known genes with various inactivating disablements (e.g., premature\ stop codons or frameshifts) in their "putative" protein coding regions.\ Pseudogenes are flagged as either recently processed, recently duplicated,\ or of uncertain origin (either ancient fragments or resulting from a\ single-exon parent).\

    \

    \ The following color key is used: \

    \ \ \ \ \ \ \
    ColorMeaning
     Recently duplicated
     Ambiguous
     Recently processed
    \

    \ \ \

    Methods

    \ \

    \ Briefly, the protein sequences of known human genes (as annotated by Ensembl Release\ 60) were used to search for similarities, not overlapping with known genes.\ It was determined whether the matching sequences were disabled copies of genes\ based on the occurrences of premature stop codons or frameshifts. The\ intron-exon structure of the functional gene was further used to infer\ whether a pseudogene was recently duplicated or processed. A duplicated\ pseudogene retains the intron-exon structure of its parent functional\ gene, whereas a processed pseudogene shows evidence that this structure\ has been spliced out. Small pseudogene sequences that cannot be confidently\ assigned to either the processed or duplicated category may be ancient\ fragments. Further details are in the references below.\

    \ \

    Credits

    \ \

    \ These data were generated by the pseudogene annotation group in the\ Gerstein Lab at Yale University.\

    \ \

    References

    \ \

    \ More information is available from\ Pseudogene.org.\

    \ \

    \ Zhang Z, Harrison PM, Liu Y, Gerstein M.\ \ Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in\ the human genome.\ Genome Res. 2003 Dec;13(12):2541-58.\ PMID: 14656962; PMC: PMC403796\

    \ \

    \ Zheng D, Zhang Z, Harrison PM, Karro J, Carriero N, Gerstein M.\ \ Integrated pseudogene annotation for human chromosome 22: evidence for transcription.\ J Mol Biol. 2005 May 27;349(1):27-45.\ PMID: 15876366\

    \ genes 1 autoTranslate 0\ dataVersion December 2010\ gClass_Ambiguous 100,91,191\ gClass_Duplicated 100,50,0\ gClass_Processed 180,0,0\ geneClasses Processed Duplicated Ambiguous\ group genes\ itemClassTbl pseudoYale60Class\ longLabel Yale Pseudogenes based on Ensembl Release 60\ shortLabel Yale Pseudo60\ spectrum on\ track pseudoYale60\ type genePred\ url http://tables.pseudogene.org/index.cgi?table=Human60&value=$$\ urlLabel Yale pseudogene.org link:\ visibility hide\ wgEncodeRikenCageA549CytosolPapMinusRawRep3 A549 cyto pA+ - 3 bigWig 1.000000 498770.000000 A549 cytosol polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN 2 101 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 cytosol polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel A549 cyto pA+ - 3\ subGroups view=MinusRawSignal cellType=t2A549 localization=cytosol rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageA549CytosolPapMinusRawRep3\ type bigWig 1.000000 498770.000000\ wgEncodeCshlShortRnaSeqA549NucleusShorttotalCiptapMinusRep4 A549 nucl CIP - 2 bigWig 1.000000 2598772.000000 A549 CIP-TAP nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 101 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 CIP-TAP nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel A549 nucl CIP - 2\ subGroups view=MinusSignal cellType=t2A549 localization=NUCLEUS protocol=CIPTAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqA549NucleusShorttotalCiptapMinusRep4\ type bigWig 1.000000 2598772.000000\ wgEncodeUwDnaseAg09319PkRep2 AG09319 Pk 2 narrowPeak AG09319 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 101 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09319 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel AG09319 Pk 2\ subGroups view=Peaks cellType=t3AG09319 rep=rep2 treatment=None\ track wgEncodeUwDnaseAg09319PkRep2\ type narrowPeak\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_ctss_fwd AorticSmsToIL1b_06hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_forward 0 101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep3%20%28LK60%29.CNhs13586.12857-137D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12857-137D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_06hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_tpm_fwd AorticSmsToIL1b_06hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_forward 1 101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep3%20%28LK60%29.CNhs13586.12857-137D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12857-137D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_06hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsBe2cInputStdRawRep1 BE2c In Sg 1 bigWig 1.000000 17997.000000 BE2c Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 101 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BE2c Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel BE2c In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3BE2C rep=rep1 treatment=aNone\ track wgEncodeUwTfbsBe2cInputStdRawRep1\ type bigWig 1.000000 17997.000000\ wgEncodeUwRepliSeqBjG1bPctSignalRep2 BJ G1b 2 bigWig 1.000000 100.000000 BJ G1b-Phase Repli-seq Percentage-normalized Signal Rep 2 from ENCODE/UW 1 101 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ G1b-Phase Repli-seq Percentage-normalized Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BJ G1b 2\ subGroups view=v1PctSignal cellType=t3BJ phase=p1G1B rep=rep2\ track wgEncodeUwRepliSeqBjG1bPctSignalRep2\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseFibroblSig Fibrob DS bigWig 0.000000 1.250700 Fibrobl DNaseI HS Density Signal from ENCODE/Duke 2 101 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Fibrobl DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Fibrob DS\ subGroups view=SIG cellType=t3FIBROBL treatment=zNONE\ track wgEncodeOpenChromDnaseFibroblSig\ type bigWig 0.000000 1.250700\ encTfChipPkENCFF721SDD GM12878 CUX1 narrowPeak Transcription Factor ChIP-seq Peaks of CUX1 in GM12878 from ENCODE 3 (ENCFF721SDD) 1 101 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of CUX1 in GM12878 from ENCODE 3 (ENCFF721SDD)\ parent encTfChipPk off\ shortLabel GM12878 CUX1\ subGroups cellType=GM12878 factor=CUX1\ track encTfChipPkENCFF721SDD\ wgEncodeHaibTfbsGm12878Pax5n19Pcr1xPkRep2 GM78 PAX5 PCR1 2 broadPeak GM12878 PAX5-N19 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 101 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 PAX5-N19 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 PAX5 PCR1 2\ subGroups view=Peaks factor=PAX5N19 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Pax5n19Pcr1xPkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12878Znf384hpa004051IggmusPk GM78 ZNF384 IgM narrowPeak GM12878 ZNF384 (HPA004051) IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 101 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ZNF384 (HPA004051) IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 ZNF384 IgM\ subGroups view=Peaks factor=ZNF384HPA004051 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Znf384hpa004051IggmusPk\ type narrowPeak\ wgEncodeAwgTfbsBroadH1hescCtcfUniPk H1-hESC CTCF b narrowPeak H1-hESC TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis 1 101 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC CTCF b\ subGroups tier=a10 cellType=a10H1HESC factor=CTCF lab=Broad\ track wgEncodeAwgTfbsBroadH1hescCtcfUniPk\ wgEncodeUwDgfHmvecdbladHotspots HMVEC-dBl-Ad Hot broadPeak HMVEC-dBl-Ad DNaseI DGF Hotspots from ENCODE/UW 0 101 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dBl-Ad DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HMVEC-dBl-Ad Hot\ subGroups view=Hotspots cellType=t3HMVECDBLAD treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvecdbladHotspots\ type broadPeak\ wgEncodeUwAffyExonArrayHmvecdneoSimpleSignalRep1 HMVEC-dNeo 1 broadPeak HMVEC-dNeo Exon array Signal Rep 1 from ENCODE/UW 0 101 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMVEC-dNeo Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMVEC-dNeo 1\ subGroups cellType=t3HMVECDNEO rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHmvecdneoSimpleSignalRep1\ type broadPeak\ wgEncodeDukeAffyExonHsmmfshdSimpleSignalRep2 HSMM_FSHD 2 bigBed 6 + HSMM_FSHD Exon array Signal Rep 2 from ENCODE/Duke 0 101 0 0 0 127 127 127 1 0 0 expression 1 longLabel HSMM_FSHD Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HSMM_FSHD 2\ subGroups cellType=t3HSMMFSHD treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonHsmmfshdSimpleSignalRep2\ type bigBed 6 +\ wgEncodeHaibMethylRrbsHsmmtDukeSitesRep2 HSMMtube 2 bed 9 + HSMMtube Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 101 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMMtube Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HSMMtube 2\ subGroups cellType=t3HSMMTUBE obtainedBy=DUKE treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHsmmtDukeSitesRep2\ type bed 9 +\ wgEncodeUwHistoneHuvecH3k27me3StdHotspotsRep1 HUVE H3K27M3 Ht 1 broadPeak HUVEC H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 101 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HUVE H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t2HUVEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k27me3StdHotspotsRep1\ type broadPeak\ wgEncodeGisRnaPetImr90NucleusPapMinusRawRep1 IMR9 nucl pA+ - 1 bigWig 1.000000 1125650.000000 IMR90 nucleus polyA+ clone-free RNA PET Minus signal Rep 1 from ENCODE/GIS 2 101 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 nucleus polyA+ clone-free RNA PET Minus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel IMR9 nucl pA+ - 1\ subGroups view=v2MinusRawSignal cellType=bIMR90 cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetImr90NucleusPapMinusRawRep1\ type bigWig 1.000000 1125650.000000\ wgEncodeCshlLongRnaSeqK562CellPapAlnRep1 K562 cel pA+ A 1 bam K562 whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 101 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel K562 cel pA+ A 1\ subGroups view=Alignments cellType=t1K562 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562CellPapAlnRep1\ type bam\ wgEncodeBroadHistoneK562H3k4me1StdPk K562 H3K4m1 broadPeak K562 H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 101 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks\ shortLabel K562 H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k4me1StdPk\ type broadPeak\ wgEncodeCaltechRnaSeqLhcnm2R2x75Th1014Il200Diff7dSigRep1V4 LHCND 2x75 Sg 1 bigWig 0.018100 253052.171875 LHCN-M2 Myocyte 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech 2 101 0 0 0 127 127 127 0 0 0 expression 0 longLabel LHCN-M2 Myocyte 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel LHCND 2x75 Sg 1\ subGroups view=Signal cellType=t2LHCNM2D insertLength=il200 readType=a1R2x75 rep=rep1 treatment=bDIFF7D\ track wgEncodeCaltechRnaSeqLhcnm2R2x75Th1014Il200Diff7dSigRep1V4\ type bigWig 0.018100 253052.171875\ hapmapAllelesMacaque Macaque Alleles bed 6 + Orthologous Alleles from Macaque (rheMac2) 0 101 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Orthologous Alleles from Macaque (rheMac2)\ parent hapmapSnps\ priority 101\ shortLabel Macaque Alleles\ track hapmapAllelesMacaque\ wgEncodeOpenChromChipMcf7Pol2SerumstimSig MCF-7 Pol2 stm DS bigWig 0.000000 5.031400 MCF-7 serum stim Pol2 TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 101 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 serum stim Pol2 TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel MCF-7 Pol2 stm DS\ subGroups view=SIG factor=POL2 cellType=t2MCF7 treatment=SERUMSTIM\ track wgEncodeOpenChromChipMcf7Pol2SerumstimSig\ type bigWig 0.000000 5.031400\ pgNA21732 MKK NA21732 pgSnp MKK NA21732 (Complete Genomics) 0 101 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MKK NA21732 (Complete Genomics)\ parent pgSnpCg\ shortLabel MKK NA21732\ subGroups view=C_CG id=CH_div_GS21732 type=SNP\ track pgNA21732\ wgEncodeAwgDnaseUwNt2d1UniPk NT2-D1 DNase narrowPeak NT2-D1 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 101 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NT2-D1 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel NT2-D1 DNase\ subGroups tier=a30 cellType=NT2-D1\ track wgEncodeAwgDnaseUwNt2d1UniPk\ wgEncodeOpenChromFaireRcc7860Sig RCC7860 FAIR DS bigWig 0.000000 2.507100 RCC 7860 FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 101 0 0 0 127 127 127 1 0 0 regulation 0 longLabel RCC 7860 FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel RCC7860 FAIR DS\ subGroups view=SIG cellType=t3RCC7860 treatment=AANONE\ track wgEncodeOpenChromFaireRcc7860Sig\ type bigWig 0.000000 2.507100\ wgEncodeRikenCageA549CytosolPapMinusRawRep4 A549 cyto pA+ - 4 bigWig 1.000000 1901770.000000 A549 cytosol polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN 2 102 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 cytosol polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel A549 cyto pA+ - 4\ subGroups view=MinusRawSignal cellType=t2A549 localization=cytosol rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageA549CytosolPapMinusRawRep4\ type bigWig 1.000000 1901770.000000\ wgEncodeCshlShortRnaSeqA549NucleusShorttotalCiptapPlusRep3 A549 nucl CIP + 1 bigWig 1.000000 3722878.000000 A549 CIP-TAP nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 102 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 CIP-TAP nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 nucl CIP + 1\ subGroups view=PlusSignal cellType=t2A549 localization=NUCLEUS protocol=CIPTAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqA549NucleusShorttotalCiptapPlusRep3\ type bigWig 1.000000 3722878.000000\ wgEncodeUwDnaseAg09319RawRep2 AG09319 Sg 2 bigWig 1.000000 50184.000000 AG09319 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 102 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG09319 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel AG09319 Sg 2\ subGroups view=zRSig cellType=t3AG09319 rep=rep2 treatment=None\ track wgEncodeUwDnaseAg09319RawRep2\ type bigWig 1.000000 50184.000000\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_ctss_rev AorticSmsToIL1b_06hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_reverse 0 102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep3%20%28LK60%29.CNhs13586.12857-137D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12857-137D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_06hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_tpm_rev AorticSmsToIL1b_06hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_reverse 1 102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep3%20%28LK60%29.CNhs13586.12857-137D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12857-137D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_06hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsBjCtcfStdHotspotsRep1 BJ CTCF Ht 1 broadPeak BJ CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 102 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel BJ CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3BJ rep=rep1 treatment=aNone\ track wgEncodeUwTfbsBjCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeUwRepliSeqBjS1PctSignalRep2 BJ S1 2 bigWig 1.000000 100.000000 BJ S1-Phase Repli-seq Percentage-normalized Signal Rep 2 from ENCODE/UW 1 102 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ S1-Phase Repli-seq Percentage-normalized Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BJ S1 2\ subGroups view=v1PctSignal cellType=t3BJ phase=p2S1 rep=rep2\ track wgEncodeUwRepliSeqBjS1PctSignalRep2\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseFibroblBaseOverlapSignal Fibrob OS bigWig 0.000000 318.000000 Fibrobl DNaseI HS Overlap Signal from ENCODE/Duke 2 102 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Fibrobl DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Fibrob OS\ subGroups view=SIGBO cellType=t3FIBROBL treatment=zNONE\ track wgEncodeOpenChromDnaseFibroblBaseOverlapSignal\ type bigWig 0.000000 318.000000\ encTfChipPkENCFF349MPF GM12878 DPF2 narrowPeak Transcription Factor ChIP-seq Peaks of DPF2 in GM12878 from ENCODE 3 (ENCFF349MPF) 1 102 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of DPF2 in GM12878 from ENCODE 3 (ENCFF349MPF)\ parent encTfChipPk off\ shortLabel GM12878 DPF2\ subGroups cellType=GM12878 factor=DPF2\ track encTfChipPkENCFF349MPF\ wgEncodeHaibTfbsGm12878Pax5n19Pcr1xRawRep2 GM78 PAX5 PCR1 2 bigWig 0.124647 134.369003 GM12878 PAX5-N19 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 102 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 PAX5-N19 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 PAX5 PCR1 2\ subGroups view=RawSignal factor=PAX5N19 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Pax5n19Pcr1xRawRep2\ type bigWig 0.124647 134.369003\ wgEncodeSydhTfbsGm12878Znf384hpa004051IggmusSig GM78 ZNF384 IgM bigWig 1.000000 16678.000000 GM12878 ZNF384 (HPA004051) IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 102 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ZNF384 (HPA004051) IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 ZNF384 IgM\ subGroups view=Signal factor=ZNF384HPA004051 cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878Znf384hpa004051IggmusSig\ type bigWig 1.000000 16678.000000\ wgEncodeAwgTfbsHaibH1hescCtcfsc5916V0416102UniPk H1-hESC CTCF h narrowPeak H1-hESC TFBS Uniform Peaks of CTCF_(SC-5916) from ENCODE/HudsonAlpha/Analysis 1 102 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of CTCF_(SC-5916) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC CTCF h\ subGroups tier=a10 cellType=a10H1HESC factor=CTCF lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescCtcfsc5916V0416102UniPk\ wgEncodeUwDgfHmvecdbladPkV2 HMVEC-dBl-Ad Pk narrowPeak HMVEC-dBl-Ad DNaseI DGF Peaks from ENCODE/UW 0 102 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dBl-Ad DNaseI DGF Peaks from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HMVEC-dBl-Ad Pk\ subGroups view=Peaks cellType=t3HMVECDBLAD treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvecdbladPkV2\ type narrowPeak\ wgEncodeUwAffyExonArrayHmvecdneoSimpleSignalRep2 HMVEC-dNeo 2 broadPeak HMVEC-dNeo Exon array Signal Rep 2 from ENCODE/UW 0 102 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMVEC-dNeo Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMVEC-dNeo 2\ subGroups cellType=t3HMVECDNEO rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHmvecdneoSimpleSignalRep2\ type broadPeak\ wgEncodeDukeAffyExonHsmmfshdSimpleSignalRep3 HSMM_FSHD 3 bigBed 6 + HSMM_FSHD Exon array Signal Rep 3 from ENCODE/Duke 0 102 0 0 0 127 127 127 1 0 0 expression 1 longLabel HSMM_FSHD Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HSMM_FSHD 3\ subGroups cellType=t3HSMMFSHD treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonHsmmfshdSimpleSignalRep3\ type bigBed 6 +\ wgEncodeHaibMethylRrbsHsmmtDukeSitesRep3 HSMMtube 3 bed 9 + HSMMtube Methyl-RRBS Rep 3 from ENCODE/HudsonAlpha 1 102 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMMtube Methyl-RRBS Rep 3 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HSMMtube 3\ subGroups cellType=t3HSMMTUBE obtainedBy=DUKE treatment=zNone rep=rep3\ track wgEncodeHaibMethylRrbsHsmmtDukeSitesRep3\ type bed 9 +\ wgEncodeUwHistoneHuvecH3k27me3StdPkRep1 HUVE H3K27M3 Pk 1 narrowPeak HUVEC H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 102 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HUVE H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t2HUVEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k27me3StdPkRep1\ type narrowPeak\ wgEncodeGisRnaPetImr90NucleusPapMinusRawRep2 IMR9 nucl pA+ - 2 bigWig 1.000000 1207980.000000 IMR90 nucleus polyA+ clone-free RNA PET Minus signal Rep 2 from ENCODE/GIS 2 102 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 nucleus polyA+ clone-free RNA PET Minus signal Rep 2 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel IMR9 nucl pA+ - 2\ subGroups view=v2MinusRawSignal cellType=bIMR90 cloned=Free localization=nucleus rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeGisRnaPetImr90NucleusPapMinusRawRep2\ type bigWig 1.000000 1207980.000000\ wgEncodeCshlLongRnaSeqK562CellPapAlnRep2 K562 cel pA+ A 2 bam K562 whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 102 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel K562 cel pA+ A 2\ subGroups view=Alignments cellType=t1K562 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562CellPapAlnRep2\ type bam\ wgEncodeBroadHistoneK562H3k4me1StdSig K562 H3K4m1 bigWig 0.040000 7340.479980 K562 H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 102 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal\ shortLabel K562 H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k4me1StdSig\ type bigWig 0.040000 7340.479980\ wgEncodeCaltechRnaSeqLhcnm2R2x75Il200Myc7dSplicesRep1 LHCND 2x75 Sp 1 bam LHCN-M2 Myocyte 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 102 0 0 0 127 127 127 0 0 0 expression 1 longLabel LHCN-M2 Myocyte 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel LHCND 2x75 Sp 1\ subGroups view=Splices cellType=t2LHCNM2D insertLength=il200 readType=a1R2x75 rep=rep1 treatment=bDIFF7D\ track wgEncodeCaltechRnaSeqLhcnm2R2x75Il200Myc7dSplicesRep1\ type bam\ wgEncodeOpenChromChipMcf7Pol2SerumstimBaseOverlapSignal MCF-7 Pol2 stm OS bigWig 0.000000 4512.000000 MCF-7 serum stim Pol2 TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 102 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 serum stim Pol2 TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel MCF-7 Pol2 stm OS\ subGroups view=SIGBO factor=POL2 cellType=t2MCF7 treatment=SERUMSTIM\ track wgEncodeOpenChromChipMcf7Pol2SerumstimBaseOverlapSignal\ type bigWig 0.000000 4512.000000\ pgNA21732indel MKK NA21732 indel pgSnp MKK NA21732 indel (Complete Genomics) 0 102 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MKK NA21732 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel MKK NA21732 indel\ subGroups view=C_CG id=CH_div_GS21732 type=Indel\ track pgNA21732indel\ wgEncodeAwgDnaseDukeOsteoblUniPk Osteobl DNase narrowPeak Osteobl DNaseI HS Uniform Peaks from ENCODE/Analysis 1 102 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Osteobl DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Osteobl DNase\ subGroups tier=a30 cellType=Osteobl\ track wgEncodeAwgDnaseDukeOsteoblUniPk\ wgEncodeOpenChromFaireRcc7860BaseOverlapSignal RCC7860 FAIR OS bigWig 0.000000 2955.000000 RCC 7860 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 102 0 0 0 127 127 127 1 0 0 regulation 0 longLabel RCC 7860 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel RCC7860 FAIR OS\ subGroups view=SIGBO cellType=t3RCC7860 treatment=AANONE\ track wgEncodeOpenChromFaireRcc7860BaseOverlapSignal\ type bigWig 0.000000 2955.000000\ wgEncodeRikenCageA549CytosolPapAlnRep3 A549 cyto pA+ A 3 bam A549 cytosol polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN 0 103 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 cytosol polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel A549 cyto pA+ A 3\ subGroups view=Alignments cellType=t2A549 localization=cytosol rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageA549CytosolPapAlnRep3\ type bam\ wgEncodeCshlShortRnaSeqA549NucleusShorttotalCiptapPlusRep4 A549 nucl CIP + 2 bigWig 1.000000 2588978.000000 A549 CIP-TAP nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 103 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 CIP-TAP nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 nucl CIP + 2\ subGroups view=PlusSignal cellType=t2A549 localization=NUCLEUS protocol=CIPTAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqA549NucleusShorttotalCiptapPlusRep4\ type bigWig 1.000000 2588978.000000\ wgEncodeUwDnaseAg10803HotspotsRep1 AG10803 Ht 1 broadPeak AG10803 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 103 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel AG10803 Ht 1\ subGroups view=Hot cellType=t3AG10803 rep=rep1 treatment=None\ track wgEncodeUwDnaseAg10803HotspotsRep1\ type broadPeak\ wgEncodeUwTfbsBjCtcfStdPkRep1 BJ CTCF Pk 1 narrowPeak BJ CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 103 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel BJ CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3BJ rep=rep1 treatment=aNone\ track wgEncodeUwTfbsBjCtcfStdPkRep1\ type narrowPeak\ wgEncodeUwRepliSeqBjS2PctSignalRep2 BJ S2 2 bigWig 1.000000 100.000000 BJ S2-Phase Repli-seq Percentage-normalized Signal Rep 2 from ENCODE/UW 1 103 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ S2-Phase Repli-seq Percentage-normalized Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BJ S2 2\ subGroups view=v1PctSignal cellType=t3BJ phase=p3S2 rep=rep2\ track wgEncodeUwRepliSeqBjS2PctSignalRep2\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseFibroblgm03348LenticonPk FibroB Lenti-C Pk narrowPeak Fibrobl GM03348 Lenti-Control DNaseI HS Peaks from ENCODE/Duke 3 103 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Fibrobl GM03348 Lenti-Control DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel FibroB Lenti-C Pk\ subGroups view=Peaks cellType=t3FIBROBLGM03348 treatment=LENTICON\ track wgEncodeOpenChromDnaseFibroblgm03348LenticonPk\ type narrowPeak\ encTfChipPkENCFF433PFN GM12878 E2F4 narrowPeak Transcription Factor ChIP-seq Peaks of E2F4 in GM12878 from ENCODE 3 (ENCFF433PFN) 1 103 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of E2F4 in GM12878 from ENCODE 3 (ENCFF433PFN)\ parent encTfChipPk off\ shortLabel GM12878 E2F4\ subGroups cellType=GM12878 factor=E2F4\ track encTfChipPkENCFF433PFN\ wgEncodeHaibTfbsGm12878Pbx3Pcr1xPkRep1 GM78 PBx3 PCR1 1 broadPeak GM12878 PBx3 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 103 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 PBx3 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 PBx3 PCR1 1\ subGroups view=Peaks factor=PBX3 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Pbx3Pcr1xPkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12878Zzz3StdPk GM78 ZZZ3 Std narrowPeak GM12878 ZZZ3 Standard ChIP-seq Peaks from ENCODE/SYDH 3 103 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ZZZ3 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM78 ZZZ3 Std\ subGroups view=Peaks factor=ZZZ3 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Zzz3StdPk\ type narrowPeak\ wgEncodeAwgTfbsUtaH1hescCtcfUniPk H1-hESC CTCF t narrowPeak H1-hESC TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 103 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel H1-hESC CTCF t\ subGroups tier=a10 cellType=a10H1HESC factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaH1hescCtcfUniPk\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day00Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_forward 0 103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep1%20%28UH-1%29.CNhs13694.13364-143F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13364-143F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day00Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_forward 1 103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep1%20%28UH-1%29.CNhs13694.13364-143F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13364-143F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvecdbladSig HMVEC-dBl-Ad Sig bigWig 1.000000 34767.000000 HMVEC-dBl-Ad DNaseI DGF Per-base Signal from ENCODE/UW 2 103 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dBl-Ad DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HMVEC-dBl-Ad Sig\ subGroups view=Signal cellType=t3HMVECDBLAD treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvecdbladSig\ type bigWig 1.000000 34767.000000\ wgEncodeUwAffyExonArrayHmveclblSimpleSignalRep1 HMVEC-LBl 1 broadPeak HMVEC-LBl Exon array Signal Rep 1 from ENCODE/UW 0 103 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMVEC-LBl Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMVEC-LBl 1\ subGroups cellType=t3HMVECLBL rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHmveclblSimpleSignalRep1\ type broadPeak\ wgEncodeDukeAffyExonHsmmtSimpleSignalRep1V2 HSMMtube 1 bigBed 6 + HSMMtube Exon array Signal Rep 1 from ENCODE/Duke 0 103 0 0 0 127 127 127 1 0 0 expression 1 longLabel HSMMtube Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HSMMtube 1\ subGroups cellType=t3HSMMTUBE treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonHsmmtSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeHaibMethylRrbsHsmmtubefshdDukeSitesRep1 HSMMtube_FSHD 1 bed 9 + HSMMtube FSHD Methyl RRBS Rep 1 from ENCODE/HudsonAlpha 1 103 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMMtube FSHD Methyl RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HSMMtube_FSHD 1\ subGroups cellType=t3HSMMTUBEFSHD obtainedBy=DUKE treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHsmmtubefshdDukeSitesRep1\ type bed 9 +\ wgEncodeUwHistoneHuvecH3k27me3StdRawRep1 HUVE H3K27M3 Sg 1 bigWig 1.000000 3857.000000 HUVEC H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 103 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HUVE H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t2HUVEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k27me3StdRawRep1\ type bigWig 1.000000 3857.000000\ wgEncodeGisRnaPetImr90NucleusPapPlusRawRep1 IMR9 nucl pA+ + 1 bigWig 1.000000 1069990.000000 IMR90 nucleus polyA+ clone-free RNA PET Plus signal Rep 1 from ENCODE/GIS 2 103 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 nucleus polyA+ clone-free RNA PET Plus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel IMR9 nucl pA+ + 1\ subGroups view=v2PlusRawSignal cellType=bIMR90 cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetImr90NucleusPapPlusRawRep1\ type bigWig 1.000000 1069990.000000\ wgEncodeCshlLongRnaSeqK562CellPapContigs K562 cel pA+ C bed 6 + K562 whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 103 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel K562 cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1K562 localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqK562CellPapContigs\ type bed 6 +\ wgEncodeBroadHistoneK562H3k4me2StdPk K562 H3K4m2 broadPeak K562 H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 103 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k4me2StdPk\ type broadPeak\ wgEncodeOpenChromChipMcf7InputSig MCF-7 Input DS bigWig 0.000000 3.677800 MCF-7 Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 103 0 0 0 127 127 127 1 0 0 regulation 0 longLabel MCF-7 Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel MCF-7 Input DS\ subGroups treatment=AANONE view=SIG factor=zCTRL cellType=t2MCF7\ track wgEncodeOpenChromChipMcf7InputSig\ type bigWig 0.000000 3.677800\ wgEncodeCaltechRnaSeqMcf7R2x75Il200AlignsRep1V2 MCF7 2x75 A 1 bam MCF-7 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 103 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel MCF7 2x75 A 1\ subGroups view=Aligns cellType=t2MCF7 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqMcf7R2x75Il200AlignsRep1V2\ type bam\ pgNA21733 MKK NA21733 pgSnp MKK NA21733 (Complete Genomics) 0 103 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MKK NA21733 (Complete Genomics)\ parent pgSnpCg\ shortLabel MKK NA21733\ subGroups view=C_CG id=CH_div_GS21733 type=SNP\ track pgNA21733\ wgEncodeAwgDnaseUwPanc1UniPk PANC-1 DNase narrowPeak PANC-1 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 103 0 0 0 127 127 127 1 0 0 regulation 1 longLabel PANC-1 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel PANC-1 DNase\ subGroups tier=a30 cellType=PANC-1\ track wgEncodeAwgDnaseUwPanc1UniPk\ wgEncodeOpenChromFaireSmallintestineocPk Smll int FAIRE Pk narrowPeak Small intestine FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 103 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Small intestine FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel Smll int FAIRE Pk\ subGroups view=Peaks cellType=t3SMALLINTESTINEOC treatment=AANONE\ track wgEncodeOpenChromFaireSmallintestineocPk\ type narrowPeak\ wgEncodeRikenCageA549CytosolPapAlnRep4 A549 cyto pA+ A 4 bam A549 cytosol polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN 0 104 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 cytosol polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel A549 cyto pA+ A 4\ subGroups view=Alignments cellType=t2A549 localization=cytosol rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageA549CytosolPapAlnRep4\ type bam\ wgEncodeCshlShortRnaSeqA549NucleusContigs A549 nucl C bed 6 A549 nucleus small RNA-seq Contigs from ENCODE/CSHL 2 104 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel A549 nucl C\ subGroups view=Contigs rep=Pooled cellType=t2A549 localization=NUCLEUS protocol=NONE rank=none\ track wgEncodeCshlShortRnaSeqA549NucleusContigs\ type bed 6\ wgEncodeUwDnaseAg10803PkRep1 AG10803 Pk 1 narrowPeak AG10803 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 104 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel AG10803 Pk 1\ subGroups view=Peaks cellType=t3AG10803 rep=rep1 treatment=None\ track wgEncodeUwDnaseAg10803PkRep1\ type narrowPeak\ wgEncodeUwTfbsBjCtcfStdRawRep1 BJ CTCF Sg 1 bigWig 1.000000 8153.000000 BJ CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 104 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel BJ CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3BJ rep=rep1 treatment=aNone\ track wgEncodeUwTfbsBjCtcfStdRawRep1\ type bigWig 1.000000 8153.000000\ wgEncodeUwRepliSeqBjS3PctSignalRep2 BJ S3 2 bigWig 1.000000 100.000000 BJ S3-Phase Repli-seq Percentage-normalized Signal Rep 2 from ENCODE/UW 1 104 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ S3-Phase Repli-seq Percentage-normalized Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BJ S3 2\ subGroups view=v1PctSignal cellType=t3BJ phase=p4S3 rep=rep2\ track wgEncodeUwRepliSeqBjS3PctSignalRep2\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseFibroblgm03348LenticonSig FibroB Lenti-C DS bigWig 0.000000 0.940400 Fibrobl GM03348 Lenti-Control DNaseI HS Density Signal from ENCODE/Duke 2 104 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Fibrobl GM03348 Lenti-Control DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel FibroB Lenti-C DS\ subGroups view=SIG cellType=t3FIBROBLGM03348 treatment=LENTICON\ track wgEncodeOpenChromDnaseFibroblgm03348LenticonSig\ type bigWig 0.000000 0.940400\ encTfChipPkENCFF063WXY GM12878 E2F8 narrowPeak Transcription Factor ChIP-seq Peaks of E2F8 in GM12878 from ENCODE 3 (ENCFF063WXY) 1 104 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of E2F8 in GM12878 from ENCODE 3 (ENCFF063WXY)\ parent encTfChipPk off\ shortLabel GM12878 E2F8\ subGroups cellType=GM12878 factor=E2F8\ track encTfChipPkENCFF063WXY\ wgEncodeHaibTfbsGm12878Pbx3Pcr1xRawRep1 GM78 PBx3 PCR1 1 bigWig 0.175712 145.753006 GM12878 PBx3 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 104 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 PBx3 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 PBx3 PCR1 1\ subGroups view=RawSignal factor=PBX3 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Pbx3Pcr1xRawRep1\ type bigWig 0.175712 145.753006\ wgEncodeSydhTfbsGm12878Zzz3StdSig GM78 ZZZ3 Std bigWig 0.000000 16569.800781 GM12878 ZZZ3 Standard ChIP-seq Signal from ENCODE/SYDH 2 104 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ZZZ3 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 ZZZ3 Std\ subGroups view=Signal factor=ZZZ3 cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878Zzz3StdSig\ type bigWig 0.000000 16569.800781\ wgEncodeAwgTfbsHaibH1hescEgr1V0416102UniPk H1-hESC EGR1 narrowPeak H1-hESC TFBS Uniform Peaks of Egr-1 from ENCODE/HudsonAlpha/Analysis 1 104 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of Egr-1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC EGR1\ subGroups tier=a10 cellType=a10H1HESC factor=EGR1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescEgr1V0416102UniPk\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_ctss_rev Hes3-gfpCardiomyocyticInduction_Day00Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_reverse 0 104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep1%20%28UH-1%29.CNhs13694.13364-143F7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13364-143F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_tpm_rev Hes3-gfpCardiomyocyticInduction_Day00Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_reverse 1 104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep1%20%28UH-1%29.CNhs13694.13364-143F7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13364-143F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvecdbladRaw HMVEC-dBl-Ad Raw bigWig 1.000000 145895.000000 HMVEC-dBl-Ad DNaseI DGF Raw Signal from ENCODE/UW 0 104 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dBl-Ad DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HMVEC-dBl-Ad Raw\ subGroups view=zRaw cellType=t3HMVECDBLAD treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvecdbladRaw\ type bigWig 1.000000 145895.000000\ wgEncodeUwAffyExonArrayHmveclblSimpleSignalRep2 HMVEC-LBl 2 broadPeak HMVEC-LBl Exon array Signal Rep 2 from ENCODE/UW 0 104 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMVEC-LBl Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMVEC-LBl 2\ subGroups cellType=t3HMVECLBL rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHmveclblSimpleSignalRep2\ type broadPeak\ wgEncodeDukeAffyExonHsmmtSimpleSignalRep2V2 HSMMtube 2 bigBed 6 + HSMMtube Exon array Signal Rep 2 from ENCODE/Duke 0 104 0 0 0 127 127 127 1 0 0 expression 1 longLabel HSMMtube Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HSMMtube 2\ subGroups cellType=t3HSMMTUBE treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonHsmmtSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeHaibMethylRrbsHsmmtubefshdDukeSitesRep2 HSMMtube_FSHD 2 bed 9 + HSMMtube FSHD Methyl RRBS Rep 2 from ENCODE/HudsonAlpha 1 104 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMMtube FSHD Methyl RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HSMMtube_FSHD 2\ subGroups cellType=t3HSMMTUBEFSHD obtainedBy=DUKE treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHsmmtubefshdDukeSitesRep2\ type bed 9 +\ wgEncodeUwHistoneHuvecH3k27me3StdHotspotsRep2 HUVE H3K27M3 Ht 2 broadPeak HUVEC H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 104 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HUVE H3K27M3 Ht 2\ subGroups view=Hot factor=H3K27ME3 cellType=t2HUVEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k27me3StdHotspotsRep2\ type broadPeak\ wgEncodeGisRnaPetImr90NucleusPapPlusRawRep2 IMR9 nucl pA+ + 2 bigWig 1.000000 965341.000000 IMR90 nucleus polyA+ clone-free RNA PET Plus signal Rep 2 from ENCODE/GIS 2 104 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 nucleus polyA+ clone-free RNA PET Plus signal Rep 2 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel IMR9 nucl pA+ + 2\ subGroups view=v2PlusRawSignal cellType=bIMR90 cloned=Free localization=nucleus rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeGisRnaPetImr90NucleusPapPlusRawRep2\ type bigWig 1.000000 965341.000000\ wgEncodeCshlLongRnaSeqK562CellPapJunctions K562 cel pA+ J bed 6 + K562 whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 104 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel K562 cel pA+ J\ subGroups view=Junctions cellType=t1K562 localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqK562CellPapJunctions\ type bed 6 +\ wgEncodeBroadHistoneK562H3k4me2StdSig K562 H3K4m2 bigWig 0.040000 4060.560059 K562 H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 104 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k4me2StdSig\ type bigWig 0.040000 4060.560059\ wgEncodeCaltechRnaSeqMcf7R2x75Il200AlignsRep2V2 MCF7 2x75 A 2 bam MCF-7 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 104 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel MCF7 2x75 A 2\ subGroups view=Aligns cellType=t2MCF7 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqMcf7R2x75Il200AlignsRep2V2\ type bam\ pgNA21733indel MKK NA21733 indel pgSnp MKK NA21733 indel (Complete Genomics) 0 104 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MKK NA21733 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel MKK NA21733 indel\ subGroups view=C_CG id=CH_div_GS21733 type=Indel\ track pgNA21733indel\ wgEncodeOpenChromChipMonocd14ro1746InputSig Mono-CD14+ Inp DS bigWig 0.000000 3.876800 Monocytes-CD14+ Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 104 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Monocytes-CD14+ Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Mono-CD14+ Inp DS\ subGroups treatment=AANONE view=SIG factor=zCTRL cellType=t2MONOCYTESCD14RO01746\ track wgEncodeOpenChromChipMonocd14ro1746InputSig\ type bigWig 0.000000 3.876800\ wgEncodeAwgDnaseDukePhteUniPk pHTE DNase narrowPeak pHTE DNaseI HS Uniform Peaks from ENCODE/Analysis 1 104 0 0 0 127 127 127 1 0 0 regulation 1 longLabel pHTE DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel pHTE DNase\ subGroups tier=a30 cellType=PHTE\ track wgEncodeAwgDnaseDukePhteUniPk\ wgEncodeOpenChromFaireSmallintestineocSig Smll int FAIRE DS bigWig 0.000000 0.854500 Small intestine FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 104 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Small intestine FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel Smll int FAIRE DS\ subGroups view=SIG cellType=t3SMALLINTESTINEOC treatment=AANONE\ track wgEncodeOpenChromFaireSmallintestineocSig\ type bigWig 0.000000 0.854500\ wgEncodeCshlShortRnaSeqA549NucleusShorttotalMinusRep3 A549 nucl - 1 bigWig 1.000000 21361588.000000 A549 nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 105 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel A549 nucl - 1\ subGroups view=MinusSignal cellType=t2A549 localization=NUCLEUS protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqA549NucleusShorttotalMinusRep3\ type bigWig 1.000000 21361588.000000\ wgEncodeRikenCageA549NucleusPapTssHmm A549 nucl pA+ bed 6 A549 nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 105 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel A549 nucl pA+\ subGroups view=TssHmm cellType=t2A549 localization=nucleus rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageA549NucleusPapTssHmm\ type bed 6\ wgEncodeUwDnaseAg10803RawRep1 AG10803 Sg 1 bigWig 1.000000 41633.000000 AG10803 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 105 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG10803 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel AG10803 Sg 1\ subGroups view=zRSig cellType=t3AG10803 rep=rep1 treatment=None\ track wgEncodeUwDnaseAg10803RawRep1\ type bigWig 1.000000 41633.000000\ wgEncodeUwTfbsBjCtcfStdHotspotsRep2 BJ CTCF Ht 2 broadPeak BJ CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 105 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel BJ CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3BJ rep=rep2 treatment=aNone\ track wgEncodeUwTfbsBjCtcfStdHotspotsRep2\ type broadPeak\ wgEncodeUwRepliSeqBjS4PctSignalRep2 BJ S4 2 bigWig 1.000000 100.000000 BJ S4-Phase Repli-seq Percentage-normalized Signal Rep 2 from ENCODE/UW 1 105 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ S4-Phase Repli-seq Percentage-normalized Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BJ S4 2\ subGroups view=v1PctSignal cellType=t3BJ phase=p5S4 rep=rep2\ track wgEncodeUwRepliSeqBjS4PctSignalRep2\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromChipColonocInputSig Colon Input DS bigWig 0.000000 4.467900 Colon OC Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 105 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Colon OC Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Colon Input DS\ subGroups view=SIG factor=zCTRL cellType=t3COLONOC treatment=AANONE\ track wgEncodeOpenChromChipColonocInputSig\ type bigWig 0.000000 4.467900\ wgEncodeOpenChromDnaseFibroblgm03348LenticonBaseOverlapSignal FibroB Lenti-C OS bigWig 0.000000 242.000000 Fibrobl GM03348 Lenti-Control DNaseI HS Overlap Signal from ENCODE/Duke 2 105 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Fibrobl GM03348 Lenti-Control DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel FibroB Lenti-C OS\ subGroups view=SIGBO cellType=t3FIBROBLGM03348 treatment=LENTICON\ track wgEncodeOpenChromDnaseFibroblgm03348LenticonBaseOverlapSignal\ type bigWig 0.000000 242.000000\ encTfChipPkENCFF711OSR GM12878 E4F1 narrowPeak Transcription Factor ChIP-seq Peaks of E4F1 in GM12878 from ENCODE 3 (ENCFF711OSR) 1 105 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of E4F1 in GM12878 from ENCODE 3 (ENCFF711OSR)\ parent encTfChipPk off\ shortLabel GM12878 E4F1\ subGroups cellType=GM12878 factor=E4F1\ track encTfChipPkENCFF711OSR\ wgEncodeSydhTfbsGm12878InputIggmusSig GM78 Inpt IgM bigWig 0.000000 11413.400391 GM12878 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 105 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 Inpt IgM\ subGroups view=Signal factor=ZZZINPUTIGGmus cellType=t1GM12878 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12878InputIggmusSig\ type bigWig 0.000000 11413.400391\ wgEncodeHaibTfbsGm12878Pbx3Pcr1xPkRep2 GM78 PBx3 PCR1 2 broadPeak GM12878 PBx3 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 105 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 PBx3 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 PBx3 PCR1 2\ subGroups view=Peaks factor=PBX3 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Pbx3Pcr1xPkRep2\ type broadPeak\ wgEncodeAwgTfbsHaibH1hescP300V0416102UniPk H1-hESC EP300 narrowPeak H1-hESC TFBS Uniform Peaks of p300 from ENCODE/HudsonAlpha/Analysis 1 105 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of p300 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC EP300\ subGroups tier=a10 cellType=a10H1HESC factor=EP300 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescP300V0416102UniPk\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day00Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_forward 0 105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep2%20%28UH-2%29.CNhs13695.13365-143F8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13365-143F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day00Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_forward 1 105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep2%20%28UH-2%29.CNhs13695.13365-143F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13365-143F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvecdHotspots HMVEC-dBl-Neo Hot broadPeak HMVEC-dBl-Neo DNaseI DGF Hotspots from ENCODE/UW 0 105 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dBl-Neo DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HMVEC-dBl-Neo Hot\ subGroups view=Hotspots cellType=t3HMVECDBLNEO treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvecdHotspots\ type broadPeak\ wgEncodeUwAffyExonArrayHmvecllySimpleSignalRep1 HMVEC-LLy 1 broadPeak HMVEC-LLy Exon array Signal Rep 1 from ENCODE/UW 0 105 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMVEC-LLy Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMVEC-LLy 1\ subGroups cellType=t3HMVECLLY rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHmvecllySimpleSignalRep1\ type broadPeak\ wgEncodeDukeAffyExonHsmmtSimpleSignalRep3V2 HSMMtube 3 bigBed 6 + HSMMtube Exon array Signal Rep 3 from ENCODE/Duke 0 105 0 0 0 127 127 127 1 0 0 expression 1 longLabel HSMMtube Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HSMMtube 3\ subGroups cellType=t3HSMMTUBE treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonHsmmtSimpleSignalRep3V2\ type bigBed 6 +\ wgEncodeHaibMethylRrbsHsmmtubefshdDukeSitesRep3 HSMMtube_FSHD 3 bed 9 + HSMMtube FSHD Methyl RRBS Rep 3 from ENCODE/HudsonAlpha 1 105 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMMtube FSHD Methyl RRBS Rep 3 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HSMMtube_FSHD 3\ subGroups cellType=t3HSMMTUBEFSHD obtainedBy=DUKE treatment=zNone rep=rep3\ track wgEncodeHaibMethylRrbsHsmmtubefshdDukeSitesRep3\ type bed 9 +\ wgEncodeUwHistoneHuvecH3k27me3StdPkRep2 HUVE H3K27M3 Pk 2 narrowPeak HUVEC H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 105 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HUVE H3K27M3 Pk 2\ subGroups view=Peaks factor=H3K27ME3 cellType=t2HUVEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k27me3StdPkRep2\ type narrowPeak\ wgEncodeGisRnaPetImr90NucleusPapAlnRep1 IMR9 nucl pA+ A 1 bam IMR90 nucleus polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS 0 105 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 nucleus polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel IMR9 nucl pA+ A 1\ subGroups view=v3Alignments cellType=bIMR90 cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetImr90NucleusPapAlnRep1\ type bam\ wgEncodeCshlLongRnaSeqK562CellPapMinusRawSigRep1 K562 cel pA+ - 1 bigWig 1.000000 828694.000000 K562 whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 105 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel K562 cel pA+ - 1\ subGroups view=MinusSignal cellType=t1K562 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562CellPapMinusRawSigRep1\ type bigWig 1.000000 828694.000000\ wgEncodeBroadHistoneK562H3k4me3StdPk K562 H3K4m3 broadPeak K562 H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 105 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks\ shortLabel K562 H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k4me3StdPk\ type broadPeak\ wgEncodeCaltechRnaSeqMcf7R2x75Il200AlignsRep3V2 MCF7 2x75 A 3 bam MCF-7 200 bp paired read RNA-seq Alignments Rep 3 from ENCODE/Caltech 0 105 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 200 bp paired read RNA-seq Alignments Rep 3 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel MCF7 2x75 A 3\ subGroups view=Aligns cellType=t2MCF7 insertLength=il200 readType=a1R2x75 rep=rep3 treatment=aNone\ track wgEncodeCaltechRnaSeqMcf7R2x75Il200AlignsRep3V2\ type bam\ pgNA21737 MKK NA21737 pgSnp MKK NA21737 (Complete Genomics) 0 105 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MKK NA21737 (Complete Genomics)\ parent pgSnpCg\ shortLabel MKK NA21737\ subGroups view=C_CG id=CH_div_GS21737 type=SNP\ track pgNA21737\ wgEncodeAwgDnaseDukePanisletdUniPk PanIsletD DNase narrowPeak PanIsletD DNaseI HS Uniform Peaks from ENCODE/Analysis 1 105 0 0 0 127 127 127 1 0 0 regulation 1 longLabel PanIsletD DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel PanIsletD DNase\ subGroups tier=a30 cellType=PanIsletD\ track wgEncodeAwgDnaseDukePanisletdUniPk\ wgEncodeOpenChromFaireSmallintestineocBaseOverlapSignal Smll int FAIRE OS bigWig 0.000000 2457.000000 Small intestine FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 105 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Small intestine FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel Smll int FAIRE OS\ subGroups view=SIGBO cellType=t3SMALLINTESTINEOC treatment=AANONE\ track wgEncodeOpenChromFaireSmallintestineocBaseOverlapSignal\ type bigWig 0.000000 2457.000000\ wgEncodeCshlShortRnaSeqA549NucleusShorttotalMinusRep4 A549 nucl - 2 bigWig 1.000000 16039876.000000 A549 nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 106 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel A549 nucl - 2\ subGroups view=MinusSignal cellType=t2A549 localization=NUCLEUS protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqA549NucleusShorttotalMinusRep4\ type bigWig 1.000000 16039876.000000\ wgEncodeRikenCageA549NucleusPapPlusRawRep3 A549 nucl pA+ + 3 bigWig 1.000000 1173940.000000 A549 nucleus polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN 2 106 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 nucleus polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel A549 nucl pA+ + 3\ subGroups view=PlusRawSignal cellType=t2A549 localization=nucleus rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageA549NucleusPapPlusRawRep3\ type bigWig 1.000000 1173940.000000\ wgEncodeUwDnaseAg10803HotspotsRep2 AG10803 Ht 2 broadPeak AG10803 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 106 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel AG10803 Ht 2\ subGroups view=Hot cellType=t3AG10803 rep=rep2 treatment=None\ track wgEncodeUwDnaseAg10803HotspotsRep2\ type broadPeak\ wgEncodeUwTfbsBjCtcfStdPkRep2 BJ CTCF Pk 2 narrowPeak BJ CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 106 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel BJ CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3BJ rep=rep2 treatment=aNone\ track wgEncodeUwTfbsBjCtcfStdPkRep2\ type narrowPeak\ wgEncodeUwRepliSeqBjG2PctSignalRep2 BJ G2 2 bigWig 1.000000 100.000000 BJ G2-Phase Repli-seq Percentage-normalized Signal Rep 2 from ENCODE/UW 1 106 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ G2-Phase Repli-seq Percentage-normalized Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel BJ G2 2\ subGroups view=v1PctSignal cellType=t3BJ phase=p6G2 rep=rep2\ track wgEncodeUwRepliSeqBjG2PctSignalRep2\ type bigWig 1.000000 100.000000\ wgEncodeOpenChromDnaseFibroblgm03348LentimyodPk FibroB Lenti-M Pk narrowPeak Fibrobl GM03348 Lenti-MyoD DNaseI HS Peaks from ENCODE/Duke 3 106 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Fibrobl GM03348 Lenti-MyoD DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel FibroB Lenti-M Pk\ subGroups view=Peaks cellType=t3FIBROBLGM03348 treatment=LENTIMYOD\ track wgEncodeOpenChromDnaseFibroblgm03348LentimyodPk\ type narrowPeak\ wgEncodeOpenChromChipFibroblCtcfPkRep1 Fibrobl CTCF Pk narrowPeak Fibrobl CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 106 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Fibrobl CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel Fibrobl CTCF Pk\ subGroups treatment=AANONE view=Peaks factor=CTCF cellType=t3FIBROBL\ track wgEncodeOpenChromChipFibroblCtcfPkRep1\ type narrowPeak\ encTfChipPkENCFF394DLH GM12878 EBF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of EBF1 in GM12878 from ENCODE 3 (ENCFF394DLH) 1 106 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of EBF1 in GM12878 from ENCODE 3 (ENCFF394DLH)\ parent encTfChipPk off\ shortLabel GM12878 EBF1 1\ subGroups cellType=GM12878 factor=EBF1\ track encTfChipPkENCFF394DLH\ wgEncodeHaibTfbsGm12878Pbx3Pcr1xRawRep2 GM78 PBx3 PCR1 2 bigWig 0.161431 658.559021 GM12878 PBx3 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 106 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 PBx3 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 PBx3 PCR1 2\ subGroups view=RawSignal factor=PBX3 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Pbx3Pcr1xRawRep2\ type bigWig 0.161431 658.559021\ wgEncodeSydhTfbsGm12878InputTnfaIggrabSig GM78 TNF Inpt IgR bigWig 0.000000 8421.900391 GM12878 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 106 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 TNF Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t1GM12878 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm12878InputTnfaIggrabSig\ type bigWig 0.000000 8421.900391\ wgEncodeAwgTfbsBroadH1hescEzh239875UniPk H1-hESC EZH2 narrowPeak H1-hESC TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis 1 106 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC EZH2\ subGroups tier=a10 cellType=a10H1HESC factor=EZH2 lab=Broad\ track wgEncodeAwgTfbsBroadH1hescEzh239875UniPk\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_ctss_rev Hes3-gfpCardiomyocyticInduction_Day00Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_reverse 0 106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep2%20%28UH-2%29.CNhs13695.13365-143F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13365-143F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_tpm_rev Hes3-gfpCardiomyocyticInduction_Day00Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_reverse 1 106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep2%20%28UH-2%29.CNhs13695.13365-143F8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13365-143F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvecdPk HMVEC-dBl-Neo Pk narrowPeak HMVEC-dBl-Neo DNaseI DGF Peaks from ENCODE/UW 0 106 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dBl-Neo DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HMVEC-dBl-Neo Pk\ subGroups view=Peaks cellType=t3HMVECDBLNEO treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvecdPk\ type narrowPeak\ wgEncodeUwAffyExonArrayHmvecllySimpleSignalRep2 HMVEC-LLy 2 broadPeak HMVEC-LLy Exon array Signal Rep 2 from ENCODE/UW 0 106 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMVEC-LLy Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HMVEC-LLy 2\ subGroups cellType=t3HMVECLLY rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHmvecllySimpleSignalRep2\ type broadPeak\ wgEncodeDukeAffyExonHsmmtubefshdSimpleSignalRep1 HSMMtube_FSHD 1 bigBed 6 + HSMMtube_FSHD Exon array Signal Rep 1 from ENCODE/Duke 0 106 0 0 0 127 127 127 1 0 0 expression 1 longLabel HSMMtube_FSHD Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HSMMtube_FSHD 1\ subGroups cellType=t3HSMMTUBEFSHD treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonHsmmtubefshdSimpleSignalRep1\ type bigBed 6 +\ wgEncodeHaibMethylRrbsHtr8DukeSitesRep1 HTR8svn 1 bed 9 + HTR-8svn Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 106 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HTR-8svn Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HTR8svn 1\ subGroups cellType=t3HTR8SVN obtainedBy=DUKE treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsHtr8DukeSitesRep1\ type bed 9 +\ wgEncodeUwHistoneHuvecH3k27me3StdRawRep2 HUVE H3K27M3 Sg 2 bigWig 1.000000 4013.000000 HUVEC H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 106 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HUVE H3K27M3 Sg 2\ subGroups view=zRSig factor=H3K27ME3 cellType=t2HUVEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k27me3StdRawRep2\ type bigWig 1.000000 4013.000000\ wgEncodeGisRnaPetImr90NucleusPapAlnRep2 IMR9 nucl pA+ A 2 bam IMR90 nucleus polyA+ clone-free RNA PET Alignments Rep 2 from ENCODE/GIS 0 106 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 nucleus polyA+ clone-free RNA PET Alignments Rep 2 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel IMR9 nucl pA+ A 2\ subGroups view=v3Alignments cellType=bIMR90 cloned=Free localization=nucleus rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeGisRnaPetImr90NucleusPapAlnRep2\ type bam\ wgEncodeCshlLongRnaSeqK562CellPapMinusRawSigRep2 K562 cel pA+ - 2 bigWig 1.000000 614150.000000 K562 whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 106 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel K562 cel pA+ - 2\ subGroups view=MinusSignal cellType=t1K562 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562CellPapMinusRawSigRep2\ type bigWig 1.000000 614150.000000\ wgEncodeBroadHistoneK562H3k4me3StdSig K562 H3K4m3 bigWig 0.040000 13314.719727 K562 H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 106 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal\ shortLabel K562 H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k4me3StdSig\ type bigWig 0.040000 13314.719727\ wgEncodeCaltechRnaSeqMcf7R2x75Th1014Il200SigRep1V4 MCF7 2x75 Sg 1 bigWig 0.005900 213150.828125 MCF-7 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech 2 106 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel MCF7 2x75 Sg 1\ subGroups view=Signal cellType=t2MCF7 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqMcf7R2x75Th1014Il200SigRep1V4\ type bigWig 0.005900 213150.828125\ pgNA21737indel MKK NA21737 indel pgSnp MKK NA21737 indel (Complete Genomics) 0 106 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MKK NA21737 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel MKK NA21737 indel\ subGroups view=C_CG id=CH_div_GS21737 type=Indel\ track pgNA21737indel\ wgEncodeAwgDnaseDukePanisletsUniPk PanIslets DNase narrowPeak PanIslets DNaseI HS Uniform Peaks from ENCODE/Analysis 1 106 0 0 0 127 127 127 1 0 0 regulation 1 longLabel PanIslets DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel PanIslets DNase\ subGroups tier=a30 cellType=PanIslets\ track wgEncodeAwgDnaseDukePanisletsUniPk\ wgEncodeOpenChromFaireUrotsaPk Urothl FAIRE Pk narrowPeak Urothelia FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 106 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Urothelia FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel Urothl FAIRE Pk\ subGroups treatment=AANONE view=Peaks cellType=t3UROTHELIA\ track wgEncodeOpenChromFaireUrotsaPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqA549NucleusShorttotalPlusRep3 A549 nucl + 1 bigWig 1.000000 10118687.000000 A549 nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 107 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 nucl + 1\ subGroups view=PlusSignal cellType=t2A549 localization=NUCLEUS protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqA549NucleusShorttotalPlusRep3\ type bigWig 1.000000 10118687.000000\ wgEncodeRikenCageA549NucleusPapPlusRawRep4 A549 nucl pA+ + 4 bigWig 1.000000 1054460.000000 A549 nucleus polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN 2 107 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 nucleus polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel A549 nucl pA+ + 4\ subGroups view=PlusRawSignal cellType=t2A549 localization=nucleus rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageA549NucleusPapPlusRawRep4\ type bigWig 1.000000 1054460.000000\ wgEncodeUwDnaseAg10803PkRep2 AG10803 Pk 2 narrowPeak AG10803 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 107 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel AG10803 Pk 2\ subGroups view=Peaks cellType=t3AG10803 rep=rep2 treatment=None\ track wgEncodeUwDnaseAg10803PkRep2\ type narrowPeak\ wgEncodeUwTfbsBjCtcfStdRawRep2 BJ CTCF Sg 2 bigWig 1.000000 5047.000000 BJ CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 107 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel BJ CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3BJ rep=rep2 treatment=aNone\ track wgEncodeUwTfbsBjCtcfStdRawRep2\ type bigWig 1.000000 5047.000000\ wgEncodeUwRepliSeqBjPkRep2 BJ Pk 2 bed 9 BJ Repli-seq Peaks Rep 2 from ENCODE/UW 0 107 0 0 0 127 127 127 1 0 0 regulation 1 longLabel BJ Repli-seq Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPeaks off\ shortLabel BJ Pk 2\ subGroups view=v2Peaks cellType=t3BJ phase=zNONE rep=rep2\ track wgEncodeUwRepliSeqBjPkRep2\ type bed 9\ wgEncodeOpenChromDnaseFibroblgm03348LentimyodSig FibroB Lenti-M DS bigWig 0.000000 1.114000 Fibrobl GM03348 Lenti-MyoD DNaseI HS Density Signal from ENCODE/Duke 2 107 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Fibrobl GM03348 Lenti-MyoD DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel FibroB Lenti-M DS\ subGroups view=SIG cellType=t3FIBROBLGM03348 treatment=LENTIMYOD\ track wgEncodeOpenChromDnaseFibroblgm03348LentimyodSig\ type bigWig 0.000000 1.114000\ wgEncodeOpenChromChipFibroblCtcfSig Fibrobl CTCF DS bigWig 0.000000 11.194300 Fibrobl CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 107 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Fibrobl CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Fibrobl CTCF DS\ subGroups treatment=AANONE view=SIG factor=CTCF cellType=t3FIBROBL\ track wgEncodeOpenChromChipFibroblCtcfSig\ type bigWig 0.000000 11.194300\ encTfChipPkENCFF868VSY GM12878 EBF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of EBF1 in GM12878 from ENCODE 3 (ENCFF868VSY) 1 107 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of EBF1 in GM12878 from ENCODE 3 (ENCFF868VSY)\ parent encTfChipPk off\ shortLabel GM12878 EBF1 2\ subGroups cellType=GM12878 factor=EBF1\ track encTfChipPkENCFF868VSY\ wgEncodeSydhTfbsGm12878InputIggrabSig GM78 Inpt IgR bigWig 1.000000 5818.000000 GM12878 Input IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 107 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Input IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t1GM12878 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsGm12878InputIggrabSig\ type bigWig 1.000000 5818.000000\ wgEncodeHaibTfbsGm12878Pmlsc71910V0422111PkRep1 GM78 PML V11 1 broadPeak GM12878 PML v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 107 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 PML v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 PML V11 1\ subGroups view=Peaks factor=PMLSC71910 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Pmlsc71910V0422111PkRep1\ type broadPeak\ wgEncodeAwgTfbsHaibH1hescFosl1sc183V0416102UniPk H1-hESC FOSL1 narrowPeak H1-hESC TFBS Uniform Peaks of FOSL1_(SC-183) from ENCODE/HudsonAlpha/Analysis 1 107 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of FOSL1_(SC-183) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC FOSL1\ subGroups tier=a10 cellType=a10H1HESC factor=FOSL1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescFosl1sc183V0416102UniPk\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day00Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_forward 0 107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep3%20%28UH-3%29.CNhs13738.13366-143F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13366-143F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day00Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_forward 1 107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep3%20%28UH-3%29.CNhs13738.13366-143F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13366-143F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvecdSig HMVEC-dBl-Neo Sig bigWig 1.000000 38790.000000 HMVEC-dBl-Neo DNaseI DGF Per-base Signal from ENCODE/UW 2 107 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dBl-Neo DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HMVEC-dBl-Neo Sig\ subGroups view=Signal cellType=t3HMVECDBLNEO treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvecdSig\ type bigWig 1.000000 38790.000000\ wgEncodeUwAffyExonArrayHnpceSimpleSignalRep1 HNPCEpiC 1 broadPeak HNPCEpiC Exon array Signal Rep 1 from ENCODE/UW 0 107 0 0 0 127 127 127 0 0 0 expression 1 longLabel HNPCEpiC Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HNPCEpiC 1\ subGroups cellType=t3HNPCEPIC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHnpceSimpleSignalRep1\ type broadPeak\ wgEncodeDukeAffyExonHsmmtubefshdSimpleSignalRep2 HSMMtube_FSHD 2 bigBed 6 + HSMMtube_FSHD Exon array Signal Rep 2 from ENCODE/Duke 0 107 0 0 0 127 127 127 1 0 0 expression 1 longLabel HSMMtube_FSHD Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HSMMtube_FSHD 2\ subGroups cellType=t3HSMMTUBEFSHD treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonHsmmtubefshdSimpleSignalRep2\ type bigBed 6 +\ wgEncodeHaibMethylRrbsHtr8DukeSitesRep3 HTR8svn 2 bed 9 + HTR-8svn Methyl-RRBS Rep 2 (Lab Rep 3) from ENCODE/HudsonAlpha 1 107 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HTR-8svn Methyl-RRBS Rep 2 (Lab Rep 3) from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel HTR8svn 2\ subGroups cellType=t3HTR8SVN obtainedBy=DUKE treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsHtr8DukeSitesRep3\ type bed 9 +\ wgEncodeUwHistoneHuvecH3k36me3StdHotspotsRep1 HUVE H3K36M3 Ht 1 broadPeak HUVEC H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 107 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HUVE H3K36M3 Ht 1\ subGroups view=Hot factor=H3K36ME3 cellType=t2HUVEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k36me3StdHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqK562CellPapPlusRawSigRep1 K562 cel pA+ + 1 bigWig 1.000000 870831.000000 K562 whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 107 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel K562 cel pA+ + 1\ subGroups view=PlusSignal cellType=t1K562 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562CellPapPlusRawSigRep1\ type bigWig 1.000000 870831.000000\ wgEncodeBroadHistoneK562H3k9acStdPk K562 H3K9ac broadPeak K562 H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 107 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 H3K9ac\ subGroups view=Peaks factor=H3K09AC cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k9acStdPk\ type broadPeak\ wgEncodeCaltechRnaSeqMcf7R2x75Th1014Il200SigRep2V4 MCF7 2x75 Sg 2 bigWig 0.024300 310099.000000 MCF-7 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech 2 107 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel MCF7 2x75 Sg 2\ subGroups view=Signal cellType=t2MCF7 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqMcf7R2x75Th1014Il200SigRep2V4\ type bigWig 0.024300 310099.000000\ wgEncodeGisRnaPetMcf7CellPapClusters MCF7 cell pA+ bed 6 + MCF-7 whole cell polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS 2 107 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 whole cell polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel MCF7 cell pA+\ subGroups view=v1Clusters cellType=bMCF7 cloned=Free localization=cell rnaExtract=PAP rep=rep1 rank=none\ track wgEncodeGisRnaPetMcf7CellPapClusters\ type bed 6 +\ pgNA21767 MKK NA21767 pgSnp MKK NA21767 (Complete Genomics) 0 107 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MKK NA21767 (Complete Genomics)\ parent pgSnpCg\ shortLabel MKK NA21767\ subGroups view=C_CG id=CH_div_GS21767 type=SNP\ track pgNA21767\ wgEncodeAwgDnaseUwPrecUniPk PrEC DNase narrowPeak PrEC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 107 0 0 0 127 127 127 1 0 0 regulation 1 longLabel PrEC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel PrEC DNase\ subGroups tier=a30 cellType=PrEC\ track wgEncodeAwgDnaseUwPrecUniPk\ wgEncodeOpenChromFaireUrotsaSig Urothl FAIRE DS bigWig 0.000000 0.358300 Urothelia FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 107 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Urothelia FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel Urothl FAIRE DS\ subGroups treatment=AANONE view=SIG cellType=t3UROTHELIA\ track wgEncodeOpenChromFaireUrotsaSig\ type bigWig 0.000000 0.358300\ wgEncodeCshlShortRnaSeqA549NucleusShorttotalPlusRep4 A549 nucl + 2 bigWig 1.000000 10536828.000000 A549 nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 108 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 nucl + 2\ subGroups view=PlusSignal cellType=t2A549 localization=NUCLEUS protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqA549NucleusShorttotalPlusRep4\ type bigWig 1.000000 10536828.000000\ wgEncodeRikenCageA549NucleusPapMinusRawRep3 A549 nucl pA+ - 3 bigWig 1.000000 376509.000000 A549 nucleus polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN 2 108 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 nucleus polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel A549 nucl pA+ - 3\ subGroups view=MinusRawSignal cellType=t2A549 localization=nucleus rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageA549NucleusPapMinusRawRep3\ type bigWig 1.000000 376509.000000\ wgEncodeUwDnaseAg10803RawRep2 AG10803 Sg 2 bigWig 1.000000 44945.000000 AG10803 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 108 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG10803 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel AG10803 Sg 2\ subGroups view=zRSig cellType=t3AG10803 rep=rep2 treatment=None\ track wgEncodeUwDnaseAg10803RawRep2\ type bigWig 1.000000 44945.000000\ wgEncodeUwTfbsBjInputStdRawRep1 BJ In Sg 1 bigWig 1.000000 15966.000000 BJ Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 108 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel BJ In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3BJ rep=rep1 treatment=aNone\ track wgEncodeUwTfbsBjInputStdRawRep1\ type bigWig 1.000000 15966.000000\ wgEncodeUwRepliSeqBjValleysRep2 BJ Vly 2 bed 9 BJ Repli-seq Valleys Rep 2 from ENCODE/UW 0 108 0 0 0 127 127 127 1 0 0 regulation 1 longLabel BJ Repli-seq Valleys Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewValleys off\ shortLabel BJ Vly 2\ subGroups view=v3Valleys cellType=t3BJ phase=zNONE rep=rep2\ track wgEncodeUwRepliSeqBjValleysRep2\ type bed 9\ wgEncodeOpenChromDnaseFibroblgm03348LentimyodBaseOverlapSignal FibroB Lenti-M OS bigWig 0.000000 242.000000 Fibrobl GM03348 Lenti-MyoD DNaseI HS Overlap Signal from ENCODE/Duke 2 108 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Fibrobl GM03348 Lenti-MyoD DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel FibroB Lenti-M OS\ subGroups view=SIGBO cellType=t3FIBROBLGM03348 treatment=LENTIMYOD\ track wgEncodeOpenChromDnaseFibroblgm03348LentimyodBaseOverlapSignal\ type bigWig 0.000000 242.000000\ wgEncodeOpenChromChipFibroblCtcfBaseOverlapSignal Fibrobl CTCF OS bigWig 0.000000 3389.000000 Fibrobl CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 108 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Fibrobl CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel Fibrobl CTCF OS\ subGroups treatment=AANONE view=SIGBO factor=CTCF cellType=t3FIBROBL\ track wgEncodeOpenChromChipFibroblCtcfBaseOverlapSignal\ type bigWig 0.000000 3389.000000\ encTfChipPkENCFF242VUO GM12878 EED narrowPeak Transcription Factor ChIP-seq Peaks of EED in GM12878 from ENCODE 3 (ENCFF242VUO) 1 108 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of EED in GM12878 from ENCODE 3 (ENCFF242VUO)\ parent encTfChipPk off\ shortLabel GM12878 EED\ subGroups cellType=GM12878 factor=EED\ track encTfChipPkENCFF242VUO\ wgEncodeSydhTfbsGm12878InputStdSig GM78 Inpt Std bigWig 0.000000 9525.200195 GM12878 Input Standard ChIP-seq Signal from ENCODE/SYDH 2 108 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Input Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM78 Inpt Std\ subGroups view=Signal factor=ZZZINPUTSTD cellType=t1GM12878 control=STD treatment=aNONE\ track wgEncodeSydhTfbsGm12878InputStdSig\ type bigWig 0.000000 9525.200195\ wgEncodeHaibTfbsGm12878Pmlsc71910V0422111RawRep1 GM78 PML V11 1 bigWig 0.152215 190.192001 GM12878 PML v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 108 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 PML v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 PML V11 1\ subGroups view=RawSignal factor=PMLSC71910 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Pmlsc71910V0422111RawRep1\ type bigWig 0.152215 190.192001\ wgEncodeAwgTfbsHaibH1hescGabpPcr1xUniPk H1-hESC GABPA narrowPeak H1-hESC TFBS Uniform Peaks of GABP from ENCODE/HudsonAlpha/Analysis 1 108 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of GABP from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC GABPA\ subGroups tier=a10 cellType=a10H1HESC factor=GABPA lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescGabpPcr1xUniPk\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_ctss_rev Hes3-gfpCardiomyocyticInduction_Day00Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_reverse 0 108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep3%20%28UH-3%29.CNhs13738.13366-143F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13366-143F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_tpm_rev Hes3-gfpCardiomyocyticInduction_Day00Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_reverse 1 108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep3%20%28UH-3%29.CNhs13738.13366-143F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13366-143F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvecdRaw HMVEC-dBl-Neo Raw bigWig 1.000000 178579.000000 HMVEC-dBl-Neo DNaseI DGF Raw Signal from ENCODE/UW 0 108 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dBl-Neo DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HMVEC-dBl-Neo Raw\ subGroups view=zRaw cellType=t3HMVECDBLNEO treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvecdRaw\ type bigWig 1.000000 178579.000000\ wgEncodeUwAffyExonArrayHnpceSimpleSignalRep2 HNPCEpiC 2 broadPeak HNPCEpiC Exon array Signal Rep 2 from ENCODE/UW 0 108 0 0 0 127 127 127 0 0 0 expression 1 longLabel HNPCEpiC Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HNPCEpiC 2\ subGroups cellType=t3HNPCEPIC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHnpceSimpleSignalRep2\ type broadPeak\ wgEncodeDukeAffyExonHsmmtubefshdSimpleSignalRep3 HSMMtube_FSHD 3 bigBed 6 + HSMMtube_FSHD Exon array Signal Rep 3 from ENCODE/Duke 0 108 0 0 0 127 127 127 1 0 0 expression 1 longLabel HSMMtube_FSHD Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HSMMtube_FSHD 3\ subGroups cellType=t3HSMMTUBEFSHD treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonHsmmtubefshdSimpleSignalRep3\ type bigBed 6 +\ wgEncodeUwHistoneHuvecH3k36me3StdPkRep1 HUVE H3K36M3 Pk 1 narrowPeak HUVEC H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 108 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HUVE H3K36M3 Pk 1\ subGroups view=Peaks factor=H3K36ME3 cellType=t2HUVEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k36me3StdPkRep1\ type narrowPeak\ wgEncodeHaibMethylRrbsJurkatUwSitesRep1 Jurkat 1 bed 9 + Jurkat Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 108 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Jurkat Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Jurkat 1\ subGroups cellType=t3JURKAT obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsJurkatUwSitesRep1\ type bed 9 +\ wgEncodeCshlLongRnaSeqK562CellPapPlusRawSigRep2 K562 cel pA+ + 2 bigWig 1.000000 1475448.000000 K562 whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 108 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel K562 cel pA+ + 2\ subGroups view=PlusSignal cellType=t1K562 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562CellPapPlusRawSigRep2\ type bigWig 1.000000 1475448.000000\ wgEncodeBroadHistoneK562H3k9acStdSig K562 H3K9ac bigWig 0.040000 14247.200195 K562 H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 108 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 H3K9ac\ subGroups view=Signal factor=H3K09AC cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k9acStdSig\ type bigWig 0.040000 14247.200195\ wgEncodeCaltechRnaSeqMcf7R2x75Th1014Il200SigRep3V4 MCF7 2x75 Sg 3 bigWig 0.018500 227099.500000 MCF-7 200 bp paired read RNA-seq Signal Rep 3 from ENCODE/Caltech 2 108 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 200 bp paired read RNA-seq Signal Rep 3 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel MCF7 2x75 Sg 3\ subGroups view=Signal cellType=t2MCF7 insertLength=il200 readType=a1R2x75 rep=rep3 treatment=aNone\ track wgEncodeCaltechRnaSeqMcf7R2x75Th1014Il200SigRep3V4\ type bigWig 0.018500 227099.500000\ wgEncodeGisRnaPetMcf7CellPapMinusRawRep3 MCF7 cell pA+ - 3 bigWig 1.000000 1559460.000000 MCF-7 whole cell polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS 2 108 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel MCF7 cell pA+ - 3\ subGroups view=v2MinusRawSignal cellType=bMCF7 cloned=Free localization=cell rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetMcf7CellPapMinusRawRep3\ type bigWig 1.000000 1559460.000000\ pgNA21767indel MKK NA21767 indel pgSnp MKK NA21767 indel (Complete Genomics) 0 108 0 0 0 127 127 127 0 0 0 varRep 1 longLabel MKK NA21767 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel MKK NA21767 indel\ subGroups view=C_CG id=CH_div_GS21767 type=Indel\ track pgNA21767indel\ wgEncodeAwgDnaseDukeProgfibUniPk ProgFib DNase narrowPeak ProgFib DNaseI HS Uniform Peaks from ENCODE/Analysis 1 108 0 0 0 127 127 127 1 0 0 regulation 1 longLabel ProgFib DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel ProgFib DNase\ subGroups tier=a30 cellType=ProgFib\ track wgEncodeAwgDnaseDukeProgfibUniPk\ wgEncodeOpenChromFaireUrotsaBaseOverlapSignal Urothl FAIRE OS bigWig 0.000000 1146.000000 Urothelia FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 108 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Urothelia FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel Urothl FAIRE OS\ subGroups treatment=AANONE view=SIGBO cellType=t3UROTHELIA\ track wgEncodeOpenChromFaireUrotsaBaseOverlapSignal\ type bigWig 0.000000 1146.000000\ wgEncodeRikenCageA549NucleusPapMinusRawRep4 A549 nucl pA+ - 4 bigWig 1.000000 1460370.000000 A549 nucleus polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN 2 109 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 nucleus polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel A549 nucl pA+ - 4\ subGroups view=MinusRawSignal cellType=t2A549 localization=nucleus rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageA549NucleusPapMinusRawRep4\ type bigWig 1.000000 1460370.000000\ wgEncodeCshlShortRnaSeqA549NucleusTapContigs A549 nucl TAP C bed 6 A549 TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL 2 109 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel A549 nucl TAP C\ subGroups view=Contigs rep=Pooled cellType=t2A549 localization=NUCLEUS protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqA549NucleusTapContigs\ type bed 6\ wgEncodeUwDnaseAoafHotspotsRep1 AoAF Ht 1 broadPeak AoAF DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 109 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoAF DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel AoAF Ht 1\ subGroups view=Hot cellType=t3AOAF rep=rep1 treatment=None\ track wgEncodeUwDnaseAoafHotspotsRep1\ type broadPeak\ wgEncodeUwRepliSeqBjWaveSignalRep2 BJ Ws 2 bigWig -4.167373 85.385254 BJ Repli-seq Wavelet-smoothed Signal Rep 2 from ENCODE/UW 2 109 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ Repli-seq Wavelet-smoothed Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewWaveSignal off\ shortLabel BJ Ws 2\ subGroups view=v4WaveSignal cellType=t3BJ phase=zNONE rep=rep2\ track wgEncodeUwRepliSeqBjWaveSignalRep2\ type bigWig -4.167373 85.385254\ wgEncodeUwTfbsCaco2CtcfStdHotspotsRep1 Caco2 CTCF Ht 1 broadPeak Caco-2 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 109 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel Caco2 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3CACO2 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsCaco2CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeOpenChromDnaseFibroblgm03348Pk FibroB Pk narrowPeak Fibrobl GM03348 DNaseI HS Peaks from ENCODE/Duke 3 109 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Fibrobl GM03348 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel FibroB Pk\ subGroups view=Peaks cellType=t3FIBROBLGM03348 treatment=zNONE\ track wgEncodeOpenChromDnaseFibroblgm03348Pk\ type narrowPeak\ wgEncodeOpenChromChipFibroblInputSig Fibrobl Input DS bigWig 0.000000 4.264300 Fibrobl Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 109 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Fibrobl Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Fibrobl Input DS\ subGroups treatment=AANONE view=SIG factor=zCTRL cellType=t3FIBROBL\ track wgEncodeOpenChromChipFibroblInputSig\ type bigWig 0.000000 4.264300\ encTfChipPkENCFF618EFD GM12878 EGR1 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in GM12878 from ENCODE 3 (ENCFF618EFD) 1 109 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of EGR1 in GM12878 from ENCODE 3 (ENCFF618EFD)\ parent encTfChipPk off\ shortLabel GM12878 EGR1\ subGroups cellType=GM12878 factor=EGR1\ track encTfChipPkENCFF618EFD\ wgEncodeHaibTfbsGm12878Pmlsc71910V0422111PkRep2 GM78 PML V11 2 broadPeak GM12878 PML v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 109 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 PML v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 PML V11 2\ subGroups view=Peaks factor=PMLSC71910 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Pmlsc71910V0422111PkRep2\ type broadPeak\ wgEncodeAwgTfbsSydhH1hescGtf2f1IggrabUniPk H1-hESC GTF2F1 narrowPeak H1-hESC TFBS Uniform Peaks of GTF2F1_(AB28179) from ENCODE/Stanford/Analysis 1 109 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of GTF2F1_(AB28179) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC GTF2F1\ subGroups tier=a10 cellType=a10H1HESC factor=GTF2F1 lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescGtf2f1IggrabUniPk\ wgEncodeSydhTfbsH1hescBach1sc14700IggrabPk H1ES Bach1 IgR narrowPeak H1-hESC Bach1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 109 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Bach1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES Bach1 IgR\ subGroups view=Peaks factor=BACH1SC14700 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescBach1sc14700IggrabPk\ type narrowPeak\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day01Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_forward 0 109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep1.CNhs13653.13328-143B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13328-143B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day01Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_forward 1 109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep1.CNhs13653.13328-143B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13328-143B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvecfHotspots HMVEC-dLy-Neo Hot broadPeak HMVEC-dLy-Neo DNaseI DGF Hotspots from ENCODE/UW 0 109 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dLy-Neo DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HMVEC-dLy-Neo Hot\ subGroups view=Hotspots cellType=t3HMVECDLYNEO treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvecfHotspots\ type broadPeak\ wgEncodeUwAffyExonArrayHpaecSimpleSignalRep1 HPAEC 1 broadPeak HPAEC Exon-array Signal Rep 1 from ENCODE/UW 0 109 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPAEC Exon-array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HPAEC 1\ subGroups cellType=t3HPAEC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHpaecSimpleSignalRep1\ type broadPeak\ wgEncodeDukeAffyExonHtr8SimpleSignalRep1V2 HTR8svn 1 bigBed 6 + HTR8svn Exon array Signal Rep 1 from ENCODE/Duke 0 109 0 0 0 127 127 127 1 0 0 expression 1 longLabel HTR8svn Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HTR8svn 1\ subGroups cellType=t3HTR8SVN treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonHtr8SimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeUwHistoneHuvecH3k36me3StdRawRep1 HUVE H3K36M3 Sg 1 bigWig 1.000000 4984.000000 HUVEC H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 109 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HUVE H3K36M3 Sg 1\ subGroups view=zRSig factor=H3K36ME3 cellType=t2HUVEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k36me3StdRawRep1\ type bigWig 1.000000 4984.000000\ wgEncodeHaibMethylRrbsJurkatUwSitesRep2 Jurkat 2 bed 9 + Jurkati Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 109 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Jurkati Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Jurkat 2\ subGroups cellType=t3JURKAT obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsJurkatUwSitesRep2\ type bed 9 +\ wgEncodeCshlLongRnaSeqK562ChromatinTotalAlnRep3 K562 chrm tot A 1 bam K562 chromatin total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 109 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 chromatin total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel K562 chrm tot A 1\ subGroups view=Alignments cellType=t1K562 localization=CHROMATIN rnaExtract=TOTAL rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqK562ChromatinTotalAlnRep3\ type bam\ wgEncodeBroadHistoneK562H3k9me3StdPk K562 H3K9m3 broadPeak K562 H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 109 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 H3K9m3\ subGroups view=Peaks factor=H3K09ME3 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k9me3StdPk\ type broadPeak\ wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep1V2 MCF7 2x75 Sp 1 bam MCF-7 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 109 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel MCF7 2x75 Sp 1\ subGroups view=Splices cellType=t2MCF7 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep1V2\ type bam\ wgEncodeGisRnaPetMcf7CellPapMinusRawRep4 MCF7 cell pA+ - 4 bigWig 1.000000 1961550.000000 MCF-7 whole cell polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS 2 109 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel MCF7 cell pA+ - 4\ subGroups view=v2MinusRawSignal cellType=bMCF7 cloned=Free localization=cell rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetMcf7CellPapMinusRawRep4\ type bigWig 1.000000 1961550.000000\ wgEncodeAwgDnaseUwRptecUniPk RPTEC DNase narrowPeak RPTEC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 109 0 0 0 127 127 127 1 0 0 regulation 1 longLabel RPTEC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel RPTEC DNase\ subGroups tier=a30 cellType=RPTEC\ track wgEncodeAwgDnaseUwRptecUniPk\ pgNA20502 TSI NA20502 pgSnp TSI NA20502 (Complete Genomics) 0 109 0 0 0 127 127 127 0 0 0 varRep 1 longLabel TSI NA20502 (Complete Genomics)\ parent pgSnpCg\ shortLabel TSI NA20502\ subGroups view=C_CG id=CI_div_GS20502 type=SNP\ track pgNA20502\ wgEncodeOpenChromFaireUrotsaUt189Pk Urothl ec FAIR Pk narrowPeak Urothelia UT189 E.coli FAIRE Peaks from ENCODE/OpenChrom(UNC) 3 109 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Urothelia UT189 E.coli FAIRE Peaks from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewPeaks off\ shortLabel Urothl ec FAIR Pk\ subGroups view=Peaks cellType=t3UROTHELIA treatment=UT189\ track wgEncodeOpenChromFaireUrotsaUt189Pk\ type narrowPeak\ wgEncodeRikenCageA549NucleusPapAlnRep3 A549 nucl pA+ A 3 bam A549 nucleus polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN 0 110 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 nucleus polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel A549 nucl pA+ A 3\ subGroups view=Alignments cellType=t2A549 localization=nucleus rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageA549NucleusPapAlnRep3\ type bam\ wgEncodeCshlShortRnaSeqA549NucleusShorttotalTapMinusRep3 A549 nucl TAP - 1 bigWig 1.000000 29513508.000000 A549 TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 110 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel A549 nucl TAP - 1\ subGroups view=MinusSignal cellType=t2A549 localization=NUCLEUS protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqA549NucleusShorttotalTapMinusRep3\ type bigWig 1.000000 29513508.000000\ wgEncodeUwDnaseAoafPkRep1 AoAF Pk 1 narrowPeak AoAF DNaseI HS Peaks Rep 1 from ENCODE/UW 1 110 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoAF DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel AoAF Pk 1\ subGroups view=Peaks cellType=t3AOAF rep=rep1 treatment=None\ track wgEncodeUwDnaseAoafPkRep1\ type narrowPeak\ wgEncodeUwRepliSeqBjSumSignalRep2 BJ Sd 2 bigWig 1.000000 2359.000000 BJ Repli-seq Summed Densities Rep 2 from ENCODE/UW 0 110 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ Repli-seq Summed Densities Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewSumSignal off\ shortLabel BJ Sd 2\ subGroups view=v5SumSignal cellType=t3BJ phase=zNONE rep=rep2\ track wgEncodeUwRepliSeqBjSumSignalRep2\ type bigWig 1.000000 2359.000000\ wgEncodeUwTfbsCaco2CtcfStdPkRep1 Caco2 CTCF Pk 1 narrowPeak Caco-2 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 110 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel Caco2 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3CACO2 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsCaco2CtcfStdPkRep1\ type narrowPeak\ wgEncodeOpenChromDnaseFibroblgm03348Sig FibroB DS bigWig 0.000000 1.073700 Fibrobl GM03348 DNaseI HS Density Signal from ENCODE/Duke 2 110 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Fibrobl GM03348 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel FibroB DS\ subGroups view=SIG cellType=t3FIBROBLGM03348 treatment=zNONE\ track wgEncodeOpenChromDnaseFibroblgm03348Sig\ type bigWig 0.000000 1.073700\ wgEncodeOpenChromChipGlioblaCtcfPkRep1 Gliobla CTCF Pk narrowPeak Gliobla CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 110 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Gliobla CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel Gliobla CTCF Pk\ subGroups treatment=AANONE view=Peaks factor=CTCF cellType=t3GLIOBLA\ track wgEncodeOpenChromChipGlioblaCtcfPkRep1\ type narrowPeak\ encTfChipPkENCFF807AKG GM12878 ELF1 narrowPeak Transcription Factor ChIP-seq Peaks of ELF1 in GM12878 from ENCODE 3 (ENCFF807AKG) 1 110 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ELF1 in GM12878 from ENCODE 3 (ENCFF807AKG)\ parent encTfChipPk on\ shortLabel GM12878 ELF1\ subGroups cellType=GM12878 factor=ELF1\ track encTfChipPkENCFF807AKG\ wgEncodeHaibTfbsGm12878Pmlsc71910V0422111RawRep2 GM78 PML V11 2 bigWig 0.153088 143.903000 GM12878 PML v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 110 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 PML v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 PML V11 2\ subGroups view=RawSignal factor=PMLSC71910 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Pmlsc71910V0422111RawRep2\ type bigWig 0.153088 143.903000\ wgEncodeAwgTfbsHaibH1hescHdac2sc6296V0416102UniPk H1-hESC HDAC2 narrowPeak H1-hESC TFBS Uniform Peaks of HDAC2_(SC-6296) from ENCODE/HudsonAlpha/Analysis 1 110 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of HDAC2_(SC-6296) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC HDAC2\ subGroups tier=a10 cellType=a10H1HESC factor=HDAC2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescHdac2sc6296V0416102UniPk\ wgEncodeSydhTfbsH1hescBach1sc14700IggrabSig H1ES Bach1 IgR bigWig 1.000000 101131.000000 H1-hESC Bach1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 110 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Bach1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES Bach1 IgR\ subGroups view=Signal factor=BACH1SC14700 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescBach1sc14700IggrabSig\ type bigWig 1.000000 101131.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_ctss_rev Hes3-gfpCardiomyocyticInduction_Day01Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_reverse 0 110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep1.CNhs13653.13328-143B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13328-143B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_tpm_rev Hes3-gfpCardiomyocyticInduction_Day01Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_reverse 1 110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep1.CNhs13653.13328-143B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13328-143B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvecfPk HMVEC-dLy-Neo Pk narrowPeak HMVEC-dLy-Neo DNaseI DGF Peaks from ENCODE/UW 0 110 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dLy-Neo DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HMVEC-dLy-Neo Pk\ subGroups view=Peaks cellType=t3HMVECDLYNEO treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvecfPk\ type narrowPeak\ wgEncodeUwAffyExonArrayHpafSimpleSignalRep1 HPAF 1 broadPeak HPAF Exon array Signal Rep 1 from ENCODE/UW 0 110 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPAF Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HPAF 1\ subGroups cellType=t3HPAF rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHpafSimpleSignalRep1\ type broadPeak\ wgEncodeDukeAffyExonHtr8SimpleSignalRep2V2 HTR8svn 2 bigBed 6 + HTR8svn Exon array Signal Rep 2 from ENCODE/Duke 0 110 0 0 0 127 127 127 1 0 0 expression 1 longLabel HTR8svn Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel HTR8svn 2\ subGroups cellType=t3HTR8SVN treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonHtr8SimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeUwHistoneHuvecH3k36me3StdHotspotsRep2 HUVE H3K36M3 Ht 2 broadPeak HUVEC H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 110 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HUVE H3K36M3 Ht 2\ subGroups view=Hot factor=H3K36ME3 cellType=t2HUVEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k36me3StdHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqK562ChromatinTotalAlnRep4 K562 chrm tot A 2 bam K562 chromatin total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 110 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 chromatin total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel K562 chrm tot A 2\ subGroups view=Alignments cellType=t1K562 localization=CHROMATIN rnaExtract=TOTAL rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqK562ChromatinTotalAlnRep4\ type bam\ wgEncodeBroadHistoneK562H3k9me3StdSig K562 H3K9m3 bigWig 0.040000 44343.121094 K562 H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 110 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 H3K9m3\ subGroups view=Signal factor=H3K09ME3 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k9me3StdSig\ type bigWig 0.040000 44343.121094\ wgEncodeHaibMethylRrbsBckidney0111002BiochainSitesRep1 Kidney_BC 1 bed 9 + Kidney BC 01-11002 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 110 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Kidney BC 01-11002 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Kidney_BC 1\ subGroups cellType=t3KIDNEYBC0111002 obtainedBy=BioChain treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBckidney0111002BiochainSitesRep1\ type bed 9 +\ wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep2V2 MCF7 2x75 Sp 2 bam MCF-7 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 110 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel MCF7 2x75 Sp 2\ subGroups view=Splices cellType=t2MCF7 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep2V2\ type bam\ wgEncodeGisRnaPetMcf7CellPapPlusRawRep3 MCF7 cell pA+ + 3 bigWig 1.000000 897856.000000 MCF-7 whole cell polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS 2 110 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel MCF7 cell pA+ + 3\ subGroups view=v2PlusRawSignal cellType=bMCF7 cloned=Free localization=cell rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetMcf7CellPapPlusRawRep3\ type bigWig 1.000000 897856.000000\ wgEncodeAwgDnaseDukeRwpe1UniPk RWPE1 DNase narrowPeak RWPE1 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 110 0 0 0 127 127 127 1 0 0 regulation 1 longLabel RWPE1 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel RWPE1 DNase\ subGroups tier=a30 cellType=RWPE1\ track wgEncodeAwgDnaseDukeRwpe1UniPk\ pgNA20502indel TSI NA20502 indel pgSnp TSI NA20502 indel (Complete Genomics) 0 110 0 0 0 127 127 127 0 0 0 varRep 1 longLabel TSI NA20502 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel TSI NA20502 indel\ subGroups view=C_CG id=CI_div_GS20502 type=Indel\ track pgNA20502indel\ wgEncodeOpenChromFaireUrotsaUt189Sig Urothl ec FAIR DS bigWig 0.000000 0.338000 Urothelia UT189 FAIRE Density Signal from ENCODE/OpenChrom(UNC) 2 110 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Urothelia UT189 FAIRE Density Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSignal off\ shortLabel Urothl ec FAIR DS\ subGroups view=SIG cellType=t3UROTHELIA treatment=UT189\ track wgEncodeOpenChromFaireUrotsaUt189Sig\ type bigWig 0.000000 0.338000\ wgEncodeRikenCageA549NucleusPapAlnRep4 A549 nucl pA+ A 4 bam A549 nucleus polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN 0 111 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 nucleus polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel A549 nucl pA+ A 4\ subGroups view=Alignments cellType=t2A549 localization=nucleus rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageA549NucleusPapAlnRep4\ type bam\ wgEncodeCshlShortRnaSeqA549NucleusShorttotalTapMinusRep4 A549 nucl TAP - 2 bigWig 1.000000 15597996.000000 A549 TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 111 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel A549 nucl TAP - 2\ subGroups view=MinusSignal cellType=t2A549 localization=NUCLEUS protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqA549NucleusShorttotalTapMinusRep4\ type bigWig 1.000000 15597996.000000\ wgEncodeUwDnaseAoafRawRep1 AoAF Sg 1 bigWig 1.000000 37414.000000 AoAF DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 111 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AoAF DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel AoAF Sg 1\ subGroups view=zRSig cellType=t3AOAF rep=rep1 treatment=None\ track wgEncodeUwDnaseAoafRawRep1\ type bigWig 1.000000 37414.000000\ wgEncodeUwTfbsCaco2CtcfStdRawRep1 Caco2 CTCF Sg 1 bigWig 1.000000 8162.000000 Caco-2 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 111 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Caco-2 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel Caco2 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3CACO2 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsCaco2CtcfStdRawRep1\ type bigWig 1.000000 8162.000000\ wgEncodeOpenChromDnaseFibroblgm03348BaseOverlapSignal FibroB OS bigWig 0.000000 231.000000 Fibrobl GM03348 DNaseI HS Overlap Signal from ENCODE/Duke 2 111 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Fibrobl GM03348 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel FibroB OS\ subGroups view=SIGBO cellType=t3FIBROBLGM03348 treatment=zNONE\ track wgEncodeOpenChromDnaseFibroblgm03348BaseOverlapSignal\ type bigWig 0.000000 231.000000\ wgEncodeOpenChromChipGlioblaCtcfSig Gliobla CTCF DS bigWig 0.000000 5.225800 Gliobla CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 111 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Gliobla CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Gliobla CTCF DS\ subGroups treatment=AANONE view=SIG factor=CTCF cellType=t3GLIOBLA\ track wgEncodeOpenChromChipGlioblaCtcfSig\ type bigWig 0.000000 5.225800\ wgEncodeUwRepliSeqGm06990G1bPctSignalRep1 GM06990 G1b 1 bigWig 1.000000 100.000000 GM06990 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 111 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM06990 G1b 1\ subGroups view=v1PctSignal cellType=t3GM06990 phase=p1G1B rep=rep1\ track wgEncodeUwRepliSeqGm06990G1bPctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF556JBS GM12878 ELK1 narrowPeak Transcription Factor ChIP-seq Peaks of ELK1 in GM12878 from ENCODE 3 (ENCFF556JBS) 1 111 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ELK1 in GM12878 from ENCODE 3 (ENCFF556JBS)\ parent encTfChipPk off\ shortLabel GM12878 ELK1\ subGroups cellType=GM12878 factor=ELK1\ track encTfChipPkENCFF556JBS\ wgEncodeHaibTfbsGm12878Pol2Pcr2xPkRep1 GM78 Pol2 PCR2 1 broadPeak GM12878 Pol2 PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 111 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Pol2 PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 Pol2 PCR2 1\ subGroups view=Peaks factor=POL2 cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Pol2Pcr2xPkRep1\ type broadPeak\ wgEncodeAwgTfbsSydhH1hescCjunIggrabUniPk H1-hESC JUN narrowPeak H1-hESC TFBS Uniform Peaks of c-Jun from ENCODE/Stanford/Analysis 1 111 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of c-Jun from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC JUN\ subGroups tier=a10 cellType=a10H1HESC factor=JUN lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescCjunIggrabUniPk\ wgEncodeSydhTfbsH1hescBrca1IggrabPk H1ES BRC1 IgR narrowPeak H1-hESC BRCA1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 111 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC BRCA1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES BRC1 IgR\ subGroups view=Peaks factor=BRCA1A300 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescBrca1IggrabPk\ type narrowPeak\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day01Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_forward 0 111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep2.CNhs13712.13340-143D1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13340-143D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day01Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_forward 1 111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep2.CNhs13712.13340-143D1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13340-143D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvecfSig HMVEC-dLy-Neo Sig bigWig 1.000000 18816.000000 HMVEC-dLy-Neo DNaseI DGF Per-base Signal from ENCODE/UW 2 111 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dLy-Neo DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HMVEC-dLy-Neo Sig\ subGroups view=Signal cellType=t3HMVECDLYNEO treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvecfSig\ type bigWig 1.000000 18816.000000\ wgEncodeUwAffyExonArrayHpafSimpleSignalRep2 HPAF 2 broadPeak HPAF Exon array Signal Rep 2 from ENCODE/UW 0 111 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPAF Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HPAF 2\ subGroups cellType=t3HPAF rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHpafSimpleSignalRep2\ type broadPeak\ wgEncodeDukeAffyExonHuh7SimpleSignalRep1V2 Huh-7 1 bigBed 6 + Huh-7 Exon array Signal Rep 1 from ENCODE/Duke 0 111 0 0 0 127 127 127 1 0 0 expression 1 longLabel Huh-7 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Huh-7 1\ subGroups cellType=t3HUH7 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonHuh7SimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeUwHistoneHuvecH3k36me3StdPkRep2 HUVE H3K36M3 Pk 2 narrowPeak HUVEC H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 111 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HUVE H3K36M3 Pk 2\ subGroups view=Peaks factor=H3K36ME3 cellType=t2HUVEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k36me3StdPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqK562ChromatinTotalContigs K562 chrm tot C bed 6 + K562 chromatin total RNA-seq Contigs Pooled from ENCODE/CSHL 3 111 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 chromatin total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel K562 chrm tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1K562 localization=CHROMATIN rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqK562ChromatinTotalContigs\ type bed 6 +\ wgEncodeBroadHistoneK562H3k9me1StdPk K562 H3K9m1 broadPeak K562 H3K9me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 111 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K9me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 H3K9m1\ subGroups view=Peaks factor=H3K09me1 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k9me1StdPk\ type broadPeak\ wgEncodeHaibMethylRrbsBckidney0111002BiochainSitesRep2 Kidney_BC 2 bed 9 + Kidney BC 01-11002 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 111 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Kidney BC 01-11002 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Kidney_BC 2\ subGroups cellType=t3KIDNEYBC0111002 obtainedBy=BioChain treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBckidney0111002BiochainSitesRep2\ type bed 9 +\ wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep3V2 MCF7 2x75 Sp 3 bam MCF-7 200 bp paired read RNA-seq Splices Rep 3 from ENCODE/Caltech 0 111 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 200 bp paired read RNA-seq Splices Rep 3 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel MCF7 2x75 Sp 3\ subGroups view=Splices cellType=t2MCF7 insertLength=il200 readType=a1R2x75 rep=rep3 treatment=aNone\ track wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep3V2\ type bam\ wgEncodeGisRnaPetMcf7CellPapPlusRawRep4 MCF7 cell pA+ + 4 bigWig 1.000000 1174340.000000 MCF-7 whole cell polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS 2 111 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel MCF7 cell pA+ + 4\ subGroups view=v2PlusRawSignal cellType=bMCF7 cloned=Free localization=cell rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetMcf7CellPapPlusRawRep4\ type bigWig 1.000000 1174340.000000\ wgEncodeAwgDnaseUwSaecUniPk SAEC DNase narrowPeak SAEC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 111 0 0 0 127 127 127 1 0 0 regulation 1 longLabel SAEC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel SAEC DNase\ subGroups tier=a30 cellType=SAEC\ track wgEncodeAwgDnaseUwSaecUniPk\ pgNA20509 TSI NA20509 pgSnp TSI NA20509 (Complete Genomics) 0 111 0 0 0 127 127 127 0 0 0 varRep 1 longLabel TSI NA20509 (Complete Genomics)\ parent pgSnpCg\ shortLabel TSI NA20509\ subGroups view=C_CG id=CI_div_GS20509 type=SNP\ track pgNA20509\ wgEncodeOpenChromFaireUrotsaUt189BaseOverlapSignal Urothl ec FAIR OS bigWig 0.000000 1424.000000 Urothelia UT189 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC) 2 111 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Urothelia UT189 FAIRE Overlap Signal from ENCODE/OpenChrom(UNC)\ parent wgEncodeOpenChromFaireViewSigBo off\ shortLabel Urothl ec FAIR OS\ subGroups view=SIGBO cellType=t3UROTHELIA treatment=UT189\ track wgEncodeOpenChromFaireUrotsaUt189BaseOverlapSignal\ type bigWig 0.000000 1424.000000\ wgEncodeRikenCageA549CellPapTssHmm A549 cell pA+ bed 6 A549 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 112 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel A549 cell pA+\ subGroups view=TssHmm cellType=t2A549 localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageA549CellPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqA549NucleusShorttotalTapPlusRep3 A549 nucl TAP + 1 bigWig 1.000000 18103400.000000 A549 TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 112 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 nucl TAP + 1\ subGroups view=PlusSignal cellType=t2A549 localization=NUCLEUS protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqA549NucleusShorttotalTapPlusRep3\ type bigWig 1.000000 18103400.000000\ wgEncodeUwDnaseAoafHotspotsRep2 AoAF Ht 2 broadPeak AoAF DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 112 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoAF DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel AoAF Ht 2\ subGroups view=Hot cellType=t3AOAF rep=rep2 treatment=None\ track wgEncodeUwDnaseAoafHotspotsRep2\ type broadPeak\ wgEncodeUwTfbsCaco2CtcfStdHotspotsRep2 Caco2 CTCF Ht 2 broadPeak Caco-2 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 112 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel Caco2 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3CACO2 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsCaco2CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeOpenChromDnaseFibropag08395Pk FibroP Pk narrowPeak FibroP AG08395 DNaseI HS Peaks from ENCODE/Duke 3 112 0 0 0 127 127 127 1 0 0 regulation 1 longLabel FibroP AG08395 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel FibroP Pk\ subGroups view=Peaks cellType=t3FIBROPAG08395 treatment=zNONE\ track wgEncodeOpenChromDnaseFibropag08395Pk\ type narrowPeak\ wgEncodeOpenChromChipGlioblaCtcfBaseOverlapSignal Gliobla CTCF OS bigWig 0.000000 4832.000000 Gliobla CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 112 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Gliobla CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel Gliobla CTCF OS\ subGroups treatment=AANONE view=SIGBO factor=CTCF cellType=t3GLIOBLA\ track wgEncodeOpenChromChipGlioblaCtcfBaseOverlapSignal\ type bigWig 0.000000 4832.000000\ wgEncodeUwRepliSeqGm06990S1PctSignalRep1 GM06990 S1 1 bigWig 1.000000 100.000000 GM06990 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 112 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM06990 S1 1\ subGroups view=v1PctSignal cellType=t3GM06990 phase=p2S1 rep=rep1\ track wgEncodeUwRepliSeqGm06990S1PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF462GHD GM12878 EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF462GHD) 1 112 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF462GHD)\ parent encTfChipPk off\ shortLabel GM12878 EP300 1\ subGroups cellType=GM12878 factor=EP300\ track encTfChipPkENCFF462GHD\ wgEncodeHaibTfbsGm12878Pol2Pcr2xRawRep1 GM78 Pol2 PCR2 1 bigWig 0.104848 445.602997 GM12878 Pol2 PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 112 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Pol2 PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 Pol2 PCR2 1\ subGroups view=RawSignal factor=POL2 cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Pol2Pcr2xRawRep1\ type bigWig 0.104848 445.602997\ wgEncodeCaltechRnaSeqGm12891R2x75Il200AlignsRep1V2 GM91 2x75 A 1 bam GM12891 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 112 0 0 0 127 127 127 0 0 0 expression 1 longLabel GM12891 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel GM91 2x75 A 1\ subGroups view=Aligns cellType=t3GM12891 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12891R2x75Il200AlignsRep1V2\ type bam\ wgEncodeAwgTfbsHaibH1hescJundV0416102UniPk H1-hESC JUND h narrowPeak H1-hESC TFBS Uniform Peaks of JunD from ENCODE/HudsonAlpha/Analysis 1 112 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of JunD from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC JUND h\ subGroups tier=a10 cellType=a10H1HESC factor=JUND lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescJundV0416102UniPk\ wgEncodeSydhTfbsH1hescBrca1IggrabSig H1ES BRC1 IgR bigWig 1.000000 16893.000000 H1-hESC BRCA1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 112 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC BRCA1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES BRC1 IgR\ subGroups view=Signal factor=BRCA1A300 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescBrca1IggrabSig\ type bigWig 1.000000 16893.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_ctss_rev Hes3-gfpCardiomyocyticInduction_Day01Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_reverse 0 112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep2.CNhs13712.13340-143D1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13340-143D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_tpm_rev Hes3-gfpCardiomyocyticInduction_Day01Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_reverse 1 112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep2.CNhs13712.13340-143D1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13340-143D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvecfRaw HMVEC-dLy-Neo Raw bigWig 1.000000 130546.000000 HMVEC-dLy-Neo DNaseI DGF Raw Signal from ENCODE/UW 0 112 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dLy-Neo DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HMVEC-dLy-Neo Raw\ subGroups view=zRaw cellType=t3HMVECDLYNEO treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvecfRaw\ type bigWig 1.000000 130546.000000\ wgEncodeUwAffyExonArrayHpdlfSimpleSignalRep1 HPdLF 1 broadPeak HPdLF Exon array Signal Rep 1 from ENCODE/UW 0 112 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPdLF Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HPdLF 1\ subGroups cellType=t3HPDLF rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHpdlfSimpleSignalRep1\ type broadPeak\ wgEncodeDukeAffyExonHuh7SimpleSignalRep2 Huh-7 2 bigBed 6 + Huh-7 Exon array Signal Rep 2 from ENCODE/Duke 0 112 0 0 0 127 127 127 1 0 0 expression 1 longLabel Huh-7 Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Huh-7 2\ subGroups cellType=t3HUH7 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonHuh7SimpleSignalRep2\ type bigBed 6 +\ wgEncodeUwHistoneHuvecH3k36me3StdRawRep2 HUVE H3K36M3 Sg 2 bigWig 1.000000 4959.000000 HUVEC H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 112 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HUVE H3K36M3 Sg 2\ subGroups view=zRSig factor=H3K36ME3 cellType=t2HUVEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHuvecH3k36me3StdRawRep2\ type bigWig 1.000000 4959.000000\ wgEncodeCshlLongRnaSeqK562ChromatinTotalJunctions K562 chrm tot J bed 6 + K562 chromatin total RNA-seq Junctions Pooled from ENCODE/CSHL 0 112 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 chromatin total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel K562 chrm tot J\ subGroups view=Junctions cellType=t1K562 localization=CHROMATIN rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqK562ChromatinTotalJunctions\ type bed 6 +\ wgEncodeBroadHistoneK562H3k9me1StdSig K562 H3K9m1 bigWig 0.040000 22709.759766 K562 H3K9me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 112 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K9me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 H3K9m1\ subGroups view=Signal factor=H3K09me1 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k9me1StdSig\ type bigWig 0.040000 22709.759766\ wgEncodeGisRnaPetMcf7CellPapAlnRep3 MCF7 cell pA+ A 3 bam MCF-7 whole cell polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS 0 112 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 whole cell polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel MCF7 cell pA+ A 3\ subGroups view=v3Alignments cellType=bMCF7 cloned=Free localization=cell rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetMcf7CellPapAlnRep3\ type bam\ wgEncodeAwgDnaseUwSknmcUniPk SK-N-MC DNase narrowPeak SK-N-MC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 112 0 0 0 127 127 127 1 0 0 regulation 1 longLabel SK-N-MC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel SK-N-MC DNase\ subGroups tier=a30 cellType=SK-N-MC\ track wgEncodeAwgDnaseUwSknmcUniPk\ pgNA20509indel TSI NA20509 indel pgSnp TSI NA20509 indel (Complete Genomics) 0 112 0 0 0 127 127 127 0 0 0 varRep 1 longLabel TSI NA20509 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel TSI NA20509 indel\ subGroups view=C_CG id=CI_div_GS20509 type=Indel\ track pgNA20509indel\ wgEncodeHaibMethylRrbsBcleftventriclen41BiochainSitesRep1 Ventricle 1 bed 9 + Left Ventricle BC N41 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 112 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Left Ventricle BC N41 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Ventricle 1\ subGroups cellType=t3LEFTVENTRICLEBCN41 obtainedBy=BioChain treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBcleftventriclen41BiochainSitesRep1\ type bed 9 +\ wgEncodeRikenCageA549CellPapPlusSignalRep1 A549 cell pA+ + 1 bigWig 1.000000 131500.000000 A549 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 113 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel A549 cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t2A549 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageA549CellPapPlusSignalRep1\ type bigWig 1.000000 131500.000000\ wgEncodeCshlShortRnaSeqA549NucleusShorttotalTapPlusRep4 A549 nucl TAP + 2 bigWig 1.000000 17734868.000000 A549 TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 113 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel A549 nucl TAP + 2\ subGroups view=PlusSignal cellType=t2A549 localization=NUCLEUS protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqA549NucleusShorttotalTapPlusRep4\ type bigWig 1.000000 17734868.000000\ wgEncodeUwDnaseAoafPkRep2 AoAF Pk 2 narrowPeak AoAF DNaseI HS Peaks Rep 2 from ENCODE/UW 1 113 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoAF DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel AoAF Pk 2\ subGroups view=Peaks cellType=t3AOAF rep=rep2 treatment=None\ track wgEncodeUwDnaseAoafPkRep2\ type narrowPeak\ wgEncodeUwTfbsCaco2CtcfStdPkRep2 Caco2 CTCF Pk 2 narrowPeak Caco-2 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 113 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel Caco2 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3CACO2 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsCaco2CtcfStdPkRep2\ type narrowPeak\ wgEncodeOpenChromDnaseFibropag08395Sig FibroP DS bigWig 0.000000 0.638200 FibroP AG08395 DNaseI HS Density Signal from ENCODE/Duke 2 113 0 0 0 127 127 127 1 0 0 regulation 0 longLabel FibroP AG08395 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel FibroP DS\ subGroups view=SIG cellType=t3FIBROPAG08395 treatment=zNONE\ track wgEncodeOpenChromDnaseFibropag08395Sig\ type bigWig 0.000000 0.638200\ wgEncodeOpenChromChipGlioblaPol2PkRep1 Gliobla Pol2 Pk narrowPeak Gliobla Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 113 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Gliobla Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel Gliobla Pol2 Pk\ subGroups treatment=AANONE view=Peaks factor=POL2 cellType=t3GLIOBLA\ track wgEncodeOpenChromChipGlioblaPol2PkRep1\ type narrowPeak\ wgEncodeUwRepliSeqGm06990S2PctSignalRep1 GM06990 S2 1 bigWig 1.000000 100.000000 GM06990 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 113 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM06990 S2 1\ subGroups view=v1PctSignal cellType=t3GM06990 phase=p3S2 rep=rep1\ track wgEncodeUwRepliSeqGm06990S2PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF222XPQ GM12878 EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF222XPQ) 1 113 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF222XPQ)\ parent encTfChipPk off\ shortLabel GM12878 EP300 2\ subGroups cellType=GM12878 factor=EP300\ track encTfChipPkENCFF222XPQ\ wgEncodeHaibTfbsGm12878Pol2Pcr2xPkRep2 GM78 Pol2 PCR2 2 broadPeak GM12878 Pol2 PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 113 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Pol2 PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 Pol2 PCR2 2\ subGroups view=Peaks factor=POL2 cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Pol2Pcr2xPkRep2\ type broadPeak\ wgEncodeCaltechRnaSeqGm12891R2x75Il200AlignsRep2V2 GM91 2x75 A 2 bam GM12891 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 113 0 0 0 127 127 127 0 0 0 expression 1 longLabel GM12891 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel GM91 2x75 A 2\ subGroups view=Aligns cellType=t3GM12891 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12891R2x75Il200AlignsRep2V2\ type bam\ wgEncodeAwgTfbsSydhH1hescJundIggrabUniPk H1-hESC JUND s narrowPeak H1-hESC TFBS Uniform Peaks of JunD from ENCODE/Stanford/Analysis 1 113 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of JunD from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC JUND s\ subGroups tier=a10 cellType=a10H1HESC factor=JUND lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescJundIggrabUniPk\ wgEncodeSydhTfbsH1hescCebpbIggrabPk H1ES CBPB IgR narrowPeak H1-hESC CEBPB IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 113 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC CEBPB IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES CBPB IgR\ subGroups view=Peaks factor=CEBPB cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescCebpbIggrabPk\ type narrowPeak\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day01Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_forward 0 113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep3.CNhs13725.13352-143E4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13352-143E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day01Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_forward 1 113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep3.CNhs13725.13352-143E4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13352-143E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvechHotspots HMVEC-LBl Hot broadPeak HMVEC-LBl DNaseI DGF Hotspots from ENCODE/UW 0 113 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-LBl DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HMVEC-LBl Hot\ subGroups view=Hotspots cellType=t3HMVECLBL treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvechHotspots\ type broadPeak\ wgEncodeUwAffyExonArrayHpdlfSimpleSignalRep2 HPdLF 2 broadPeak HPdLF Exon array Signal Rep 2 from ENCODE/UW 0 113 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPdLF Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HPdLF 2\ subGroups cellType=t3HPDLF rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHpdlfSimpleSignalRep2\ type broadPeak\ wgEncodeDukeAffyExonHuh75SimpleSignalRep1V2 Huh-7.5 1 bigBed 6 + Huh-7.5 Exon array Signal Rep 1 from ENCODE/Duke 0 113 0 0 0 127 127 127 1 0 0 expression 1 longLabel Huh-7.5 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Huh-7.5 1\ subGroups cellType=t3HUH75 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonHuh75SimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeUwHistoneHuvecInputStdRawRep1 HUVE In Sg 1 bigWig 1.000000 8683.000000 HUVEC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 113 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HUVE In Sg 1\ subGroups view=zRSig factor=zInput cellType=t2HUVEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHuvecInputStdRawRep1\ type bigWig 1.000000 8683.000000\ wgEncodeCshlLongRnaSeqK562ChromatinTotalMinusRawSigRep3 K562 chrm tot - 1 bigWig 1.000000 1518807.000000 K562 chromatin total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 113 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 chromatin total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel K562 chrm tot - 1\ subGroups view=MinusSignal cellType=t1K562 localization=CHROMATIN rnaExtract=TOTAL rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqK562ChromatinTotalMinusRawSigRep3\ type bigWig 1.000000 1518807.000000\ wgEncodeBroadHistoneK562H3k27acStdPk K562 H3K27ac broadPeak K562 H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 113 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks\ shortLabel K562 H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k27acStdPk\ type broadPeak\ wgEncodeGisRnaPetMcf7CellPapAlnRep4 MCF7 cell pA+ A 4 bam MCF-7 whole cell polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS 0 113 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 whole cell polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel MCF7 cell pA+ A 4\ subGroups view=v3Alignments cellType=bMCF7 cloned=Free localization=cell rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetMcf7CellPapAlnRep4\ type bam\ wgEncodeAwgDnaseUwSknshraUniPk SK-N-SH_RA DNase narrowPeak SK-N-SH_RA DNaseI HS Uniform Peaks from ENCODE/Analysis 1 113 0 0 0 127 127 127 1 0 0 regulation 1 longLabel SK-N-SH_RA DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel SK-N-SH_RA DNase\ subGroups tier=a30 cellType=SK-N-SH_RA\ track wgEncodeAwgDnaseUwSknshraUniPk\ pgNA20510 TSI NA20510 pgSnp TSI NA20510 (Complete Genomics) 0 113 0 0 0 127 127 127 0 0 0 varRep 1 longLabel TSI NA20510 (Complete Genomics)\ parent pgSnpCg\ shortLabel TSI NA20510\ subGroups view=C_CG id=CI_div_GS20510 type=SNP\ track pgNA20510\ wgEncodeHaibMethylRrbsBcleftventriclen41BiochainSitesRep2 Ventricle_BC 2 bed 9 + Left Ventricle BC N41 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 113 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Left Ventricle BC N41 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Ventricle_BC 2\ subGroups cellType=t3LEFTVENTRICLEBCN41 obtainedBy=BioChain treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBcleftventriclen41BiochainSitesRep2\ type bed 9 +\ wgEncodeRikenCageA549CellPapPlusSignalRep2 A549 cell pA+ + 2 bigWig 1.000000 87645.000000 A549 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 114 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel A549 cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t2A549 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageA549CellPapPlusSignalRep2\ type bigWig 1.000000 87645.000000\ wgEncodeUwDnaseAoafRawRep2 AoAF Sg 2 bigWig 1.000000 19400.000000 AoAF DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 114 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AoAF DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel AoAF Sg 2\ subGroups view=zRSig cellType=t3AOAF rep=rep2 treatment=None\ track wgEncodeUwDnaseAoafRawRep2\ type bigWig 1.000000 19400.000000\ wgEncodeUwTfbsCaco2CtcfStdRawRep2 Caco2 CTCF Sg 2 bigWig 1.000000 10289.000000 Caco-2 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 114 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Caco-2 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel Caco2 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3CACO2 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsCaco2CtcfStdRawRep2\ type bigWig 1.000000 10289.000000\ wgEncodeCshlShortRnaSeqCd20CellTapContigs CD20 cell TAP C bed 6 CD20+ TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 114 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD20+ TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel CD20 cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t2BCELLSCD20 localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqCd20CellTapContigs\ type bed 6\ wgEncodeOpenChromDnaseFibropag08395BaseOverlapSignal FibroP OS bigWig 0.000000 391.000000 FibroP AG08395 DNaseI HS Overlap Signal from ENCODE/Duke 2 114 0 0 0 127 127 127 1 0 0 regulation 0 longLabel FibroP AG08395 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel FibroP OS\ subGroups view=SIGBO cellType=t3FIBROPAG08395 treatment=zNONE\ track wgEncodeOpenChromDnaseFibropag08395BaseOverlapSignal\ type bigWig 0.000000 391.000000\ wgEncodeOpenChromChipGlioblaPol2Sig Gliobla Pol2 DS bigWig 0.000000 2.464900 Gliobla Pol2 TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 114 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Gliobla Pol2 TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Gliobla Pol2 DS\ subGroups treatment=AANONE view=SIG factor=POL2 cellType=t3GLIOBLA\ track wgEncodeOpenChromChipGlioblaPol2Sig\ type bigWig 0.000000 2.464900\ wgEncodeUwRepliSeqGm06990S3PctSignalRep1 GM06990 S3 1 bigWig 1.000000 100.000000 GM06990 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 114 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM06990 S3 1\ subGroups view=v1PctSignal cellType=t3GM06990 phase=p4S3 rep=rep1\ track wgEncodeUwRepliSeqGm06990S3PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF302XID GM12878 EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF302XID) 1 114 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF302XID)\ parent encTfChipPk off\ shortLabel GM12878 EP300 3\ subGroups cellType=GM12878 factor=EP300\ track encTfChipPkENCFF302XID\ wgEncodeHaibTfbsGm12878Pol2Pcr2xRawRep2 GM78 Pol2 PCR2 2 bigWig 0.099281 411.470001 GM12878 Pol2 PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 114 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Pol2 PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 Pol2 PCR2 2\ subGroups view=RawSignal factor=POL2 cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Pol2Pcr2xRawRep2\ type bigWig 0.099281 411.470001\ wgEncodeCaltechRnaSeqGm12891R2x75Th1014Il200SigRep1V4 GM91 2x75 Sg 1 bigWig 0.005900 193001.843750 GM12891 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech 2 114 0 0 0 127 127 127 0 0 0 expression 0 longLabel GM12891 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel GM91 2x75 Sg 1\ subGroups view=Signal cellType=t3GM12891 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12891R2x75Th1014Il200SigRep1V4\ type bigWig 0.005900 193001.843750\ wgEncodeAwgTfbsBroadH1hescJarid1aab26049UniPk H1-hESC KDM5A narrowPeak H1-hESC TFBS Uniform Peaks of JARID1A_(ab26049) from ENCODE/Broad/Analysis 1 114 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of JARID1A_(ab26049) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC KDM5A\ subGroups tier=a10 cellType=a10H1HESC factor=KDM5A lab=Broad\ track wgEncodeAwgTfbsBroadH1hescJarid1aab26049UniPk\ wgEncodeSydhTfbsH1hescCebpbIggrabSig H1ES CBPB IgR bigWig 1.000000 19524.000000 H1-hESC CEBPB IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 114 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC CEBPB IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES CBPB IgR\ subGroups view=Signal factor=CEBPB cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescCebpbIggrabSig\ type bigWig 1.000000 19524.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_ctss_rev Hes3-gfpCardiomyocyticInduction_Day01Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_reverse 0 114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep3.CNhs13725.13352-143E4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13352-143E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_tpm_rev Hes3-gfpCardiomyocyticInduction_Day01Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_reverse 1 114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep3.CNhs13725.13352-143E4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13352-143E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvechPk HMVEC-LBl Pk narrowPeak HMVEC-LBl DNaseI DGF Peaks from ENCODE/UW 0 114 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-LBl DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HMVEC-LBl Pk\ subGroups view=Peaks cellType=t3HMVECLBL treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvechPk\ type narrowPeak\ wgEncodeUwAffyExonArrayHpfSimpleSignalRep1 HPF 1 broadPeak HPF Exon array Signal Rep 1 from ENCODE/UW 0 114 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPF Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HPF 1\ subGroups cellType=t3HPF rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHpfSimpleSignalRep1\ type broadPeak\ wgEncodeDukeAffyExonHuh75SimpleSignalRep2 Huh-7.5 2 bigBed 6 + Huh-7.5 Exon array Signal Rep 2 from ENCODE/Duke 0 114 0 0 0 127 127 127 1 0 0 expression 1 longLabel Huh-7.5 Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Huh-7.5 2\ subGroups cellType=t3HUH75 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonHuh75SimpleSignalRep2\ type bigBed 6 +\ wgEncodeCshlLongRnaSeqK562ChromatinTotalMinusRawSigRep4 K562 chrm tot - 2 bigWig 1.000000 2383507.000000 K562 chromatin total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 114 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 chromatin total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel K562 chrm tot - 2\ subGroups view=MinusSignal cellType=t1K562 localization=CHROMATIN rnaExtract=TOTAL rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqK562ChromatinTotalMinusRawSigRep4\ type bigWig 1.000000 2383507.000000\ wgEncodeBroadHistoneK562H3k27acStdSig K562 H3K27ac bigWig 0.040000 8162.640137 K562 H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 114 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal\ shortLabel K562 H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k27acStdSig\ type bigWig 0.040000 8162.640137\ wgEncodeHaibMethylRrbsBcleukocyteuhn00204BiochainSitesRep1 Leukocyte_BC 1 bed 9 + Leukocyte BC UHN00204 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 114 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Leukocyte BC UHN00204 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Leukocyte_BC 1\ subGroups cellType=t3LEUKOCYTEBCUHN00204 obtainedBy=BioChain treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBcleukocyteuhn00204BiochainSitesRep1\ type bed 9 +\ wgEncodeGisRnaPetMcf7CytosolPapClusters MCF7 cyto pA+ bed 6 + MCF-7 cytosol polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS 2 114 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 cytosol polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel MCF7 cyto pA+\ subGroups view=v1Clusters rep=rep1 rank=none cellType=bMCF7 cloned=Free localization=cytosol rnaExtract=PAP\ track wgEncodeGisRnaPetMcf7CytosolPapClusters\ type bed 6 +\ wgEncodeUwHistoneMcf7H3k4me3StdHotspotsRep1 MCF7 H3K4M3 Ht 1 broadPeak MCF-7 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 114 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel MCF7 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t2MCF7 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneMcf7H3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeAwgDnaseUwSkmcUniPk SKMC DNase narrowPeak SKMC DNaseI HS Uniform Peaks from ENCODE/Analysis 1 114 0 0 0 127 127 127 1 0 0 regulation 1 longLabel SKMC DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel SKMC DNase\ subGroups tier=a30 cellType=SKMC\ track wgEncodeAwgDnaseUwSkmcUniPk\ pgNA20510indel TSI NA20510 indel pgSnp TSI NA20510 indel (Complete Genomics) 0 114 0 0 0 127 127 127 0 0 0 varRep 1 longLabel TSI NA20510 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel TSI NA20510 indel\ subGroups view=C_CG id=CI_div_GS20510 type=Indel\ track pgNA20510indel\ wgEncodeRikenCageA549CellPapMinusSignalRep1 A549 cell pA+ - 1 bigWig 1.000000 320517.000000 A549 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 115 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel A549 cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t2A549 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageA549CellPapMinusSignalRep1\ type bigWig 1.000000 320517.000000\ wgEncodeUwDnaseBe2cHotspotsRep1 BE2 C Ht 1 broadPeak BE2 C DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 115 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BE2 C DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel BE2 C Ht 1\ subGroups view=Hot cellType=t3BE2C rep=rep1 treatment=None\ track wgEncodeUwDnaseBe2cHotspotsRep1\ type broadPeak\ wgEncodeUwTfbsCaco2InputStdRawRep1 Caco2 In Sg 1 bigWig 1.000000 9741.000000 Caco-2 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 115 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Caco-2 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel Caco2 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3CACO2 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsCaco2InputStdRawRep1\ type bigWig 1.000000 9741.000000\ wgEncodeCshlShortRnaSeqCd20ro01794CellShorttotalTapMinusRep1 CD20 cell TAP - 1 bigWig 1.000000 3448617.000000 CD20+ TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 115 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD20+ TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel CD20 cell TAP - 1\ subGroups view=MinusSignal cellType=t2BCELLSCD20 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqCd20ro01794CellShorttotalTapMinusRep1\ type bigWig 1.000000 3448617.000000\ wgEncodeOpenChromDnaseFibropag08396Pk FibroP Pk narrowPeak FibroP AG08396 DNaseI HS Peaks from ENCODE/Duke 3 115 0 0 0 127 127 127 1 0 0 regulation 1 longLabel FibroP AG08396 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel FibroP Pk\ subGroups view=Peaks cellType=t3FIBROPAG08396 treatment=zNONE\ track wgEncodeOpenChromDnaseFibropag08396Pk\ type narrowPeak\ wgEncodeOpenChromChipGlioblaPol2BaseOverlapSignal Gliobla Pol2 OS bigWig 0.000000 2106.000000 Gliobla Pol2 TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 115 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Gliobla Pol2 TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel Gliobla Pol2 OS\ subGroups treatment=AANONE view=SIGBO factor=POL2 cellType=t3GLIOBLA\ track wgEncodeOpenChromChipGlioblaPol2BaseOverlapSignal\ type bigWig 0.000000 2106.000000\ wgEncodeUwRepliSeqGm06990S4PctSignalRep1 GM06990 S4 1 bigWig 1.000000 100.000000 GM06990 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 115 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM06990 S4 1\ subGroups view=v1PctSignal cellType=t3GM06990 phase=p5S4 rep=rep1\ track wgEncodeUwRepliSeqGm06990S4PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF195PBG GM12878 ESRRA narrowPeak Transcription Factor ChIP-seq Peaks of ESRRA in GM12878 from ENCODE 3 (ENCFF195PBG) 1 115 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ESRRA in GM12878 from ENCODE 3 (ENCFF195PBG)\ parent encTfChipPk off\ shortLabel GM12878 ESRRA\ subGroups cellType=GM12878 factor=ESRRA\ track encTfChipPkENCFF195PBG\ wgEncodeHaibTfbsGm12878Pol24h8Pcr1xPkRep1 GM78 Pol2-4H8 PCR1 1 broadPeak GM12878 Pol2-4H8 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 115 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Pol2-4H8 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel GM78 Pol2-4H8 PCR1 1\ subGroups view=Peaks factor=POL24H8 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Pol24h8Pcr1xPkRep1\ type broadPeak\ wgEncodeCaltechRnaSeqGm12891R2x75Th1014Il200SigRep2V4 GM91 2x75 Sg 2 bigWig 0.020800 312844.000000 GM12891 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech 2 115 0 0 0 127 127 127 0 0 0 expression 0 longLabel GM12891 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel GM91 2x75 Sg 2\ subGroups view=Signal cellType=t3GM12891 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12891R2x75Th1014Il200SigRep2V4\ type bigWig 0.020800 312844.000000\ wgEncodeAwgTfbsSydhH1hescMafkIggrabUniPk H1-hESC MAFK narrowPeak H1-hESC TFBS Uniform Peaks of MafK_(ab50322) from ENCODE/Stanford/Analysis 1 115 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of MafK_(ab50322) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC MAFK\ subGroups tier=a10 cellType=a10H1HESC factor=MAFK lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescMafkIggrabUniPk\ wgEncodeSydhTfbsH1hescChd1a301218aIggrabPk H1ES CHD1 IgR narrowPeak H1-hESC CHD1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 115 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC CHD1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES CHD1 IgR\ subGroups view=Peaks factor=CHD1A301218A cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescChd1a301218aIggrabPk\ type narrowPeak\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day02Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_forward 0 115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep1.CNhs13654.13329-143B8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13329-143B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day02Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_forward 1 115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep1.CNhs13654.13329-143B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13329-143B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvechSig HMVEC-LBl Sig bigWig 1.000000 41385.000000 HMVEC-LBl DNaseI DGF Per-base Signal from ENCODE/UW 2 115 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-LBl DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HMVEC-LBl Sig\ subGroups view=Signal cellType=t3HMVECLBL treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvechSig\ type bigWig 1.000000 41385.000000\ wgEncodeUwAffyExonArrayHpfSimpleSignalRep2 HPF 2 broadPeak HPF Exon array Signal Rep 2 from ENCODE/UW 0 115 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPF Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HPF 2\ subGroups cellType=t3HPF rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHpfSimpleSignalRep2\ type broadPeak\ wgEncodeDukeAffyExonIpscwru1SimpleSignalRep1 iPS_CWRU1 1 bigBed 6 + iPS (CWRU1) Exon array Signal Rep 1 from ENCODE/Duke 0 115 0 0 0 127 127 127 1 0 0 expression 1 longLabel iPS (CWRU1) Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel iPS_CWRU1 1\ subGroups cellType=t3IPSCWRU1 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonIpscwru1SimpleSignalRep1\ type bigBed 6 +\ wgEncodeCshlLongRnaSeqK562ChromatinTotalPlusRawSigRep3 K562 chrm tot + 1 bigWig 1.000000 791439.000000 K562 chromatin total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 115 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 chromatin total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel K562 chrm tot + 1\ subGroups view=PlusSignal cellType=t1K562 localization=CHROMATIN rnaExtract=TOTAL rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqK562ChromatinTotalPlusRawSigRep3\ type bigWig 1.000000 791439.000000\ wgEncodeBroadHistoneK562H3k27me3StdPk K562 H3K27m3 broadPeak K562 H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 115 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks\ shortLabel K562 H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k27me3StdPk\ type broadPeak\ wgEncodeHaibMethylRrbsBcleukocyteuhn00204BiochainSitesRep2 Leukocyte_BC 2 bed 9 + Leukocyte BC UHN00204 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 115 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Leukocyte BC UHN00204 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Leukocyte_BC 2\ subGroups cellType=t3LEUKOCYTEBCUHN00204 obtainedBy=BioChain treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBcleukocyteuhn00204BiochainSitesRep2\ type bed 9 +\ wgEncodeGisRnaPetMcf7CytosolPapMinusRawRep3 MCF7 cyto pA+ - 3 bigWig 1.000000 1089100.000000 MCF-7 cytosol polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS 2 115 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 cytosol polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel MCF7 cyto pA+ - 3\ subGroups view=v2MinusRawSignal cellType=bMCF7 cloned=Free localization=cytosol rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetMcf7CytosolPapMinusRawRep3\ type bigWig 1.000000 1089100.000000\ wgEncodeUwHistoneMcf7H3k4me3StdPkRep1 MCF7 H3K4M3 Pk 1 narrowPeak MCF-7 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 115 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel MCF7 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t2MCF7 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneMcf7H3k4me3StdPkRep1\ type narrowPeak\ wgEncodeAwgDnaseDukeStellateUniPk Stellate DNase narrowPeak Stellate DNaseI HS Uniform Peaks from ENCODE/Analysis 1 115 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Stellate DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Stellate DNase\ subGroups tier=a30 cellType=Stellate\ track wgEncodeAwgDnaseDukeStellateUniPk\ pgNA20511 TSI NA20511 pgSnp TSI NA20511 (Complete Genomics) 0 115 0 0 0 127 127 127 0 0 0 varRep 1 longLabel TSI NA20511 (Complete Genomics)\ parent pgSnpCg\ shortLabel TSI NA20511\ subGroups view=C_CG id=CI_div_GS20511 type=SNP\ track pgNA20511\ wgEncodeRikenCageA549CellPapMinusSignalRep2 A549 cell pA+ - 2 bigWig 1.000000 91547.000000 A549 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 116 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel A549 cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t2A549 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageA549CellPapMinusSignalRep2\ type bigWig 1.000000 91547.000000\ wgEncodeUwDnaseBe2cPkRep1 BE2 C Pk 1 narrowPeak BE2 C DNaseI HS Peaks Rep 1 from ENCODE/UW 1 116 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BE2 C DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel BE2 C Pk 1\ subGroups view=Peaks cellType=t3BE2C rep=rep1 treatment=None\ track wgEncodeUwDnaseBe2cPkRep1\ type narrowPeak\ wgEncodeCshlShortRnaSeqCd20ro01778CellShorttotalTapMinusRep2 CD20 cell TAP - 2 bigWig 1.000000 6581650.000000 CD20+ TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 116 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD20+ TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel CD20 cell TAP - 2\ subGroups view=MinusSignal cellType=t2BCELLSCD20 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqCd20ro01778CellShorttotalTapMinusRep2\ type bigWig 1.000000 6581650.000000\ wgEncodeOpenChromDnaseFibropag08396Sig FibroP DS bigWig 0.000000 1.203900 FibroP AG08396 DNaseI HS Density Signal from ENCODE/Duke 2 116 0 0 0 127 127 127 1 0 0 regulation 0 longLabel FibroP AG08396 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel FibroP DS\ subGroups view=SIG cellType=t3FIBROPAG08396 treatment=zNONE\ track wgEncodeOpenChromDnaseFibropag08396Sig\ type bigWig 0.000000 1.203900\ wgEncodeOpenChromChipGlioblaInputSig Gliobla Input DS bigWig 0.000000 2.692900 Gliobla Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 116 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Gliobla Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Gliobla Input DS\ subGroups treatment=AANONE view=SIG factor=zCTRL cellType=t3GLIOBLA\ track wgEncodeOpenChromChipGlioblaInputSig\ type bigWig 0.000000 2.692900\ wgEncodeUwRepliSeqGm06990G2PctSignalRep1 GM06990 G2 1 bigWig 1.000000 100.000000 GM06990 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 116 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM06990 G2 1\ subGroups view=v1PctSignal cellType=t3GM06990 phase=p6G2 rep=rep1\ track wgEncodeUwRepliSeqGm06990G2PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF332PGQ GM12878 ETS1 narrowPeak Transcription Factor ChIP-seq Peaks of ETS1 in GM12878 from ENCODE 3 (ENCFF332PGQ) 1 116 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ETS1 in GM12878 from ENCODE 3 (ENCFF332PGQ)\ parent encTfChipPk off\ shortLabel GM12878 ETS1\ subGroups cellType=GM12878 factor=ETS1\ track encTfChipPkENCFF332PGQ\ wgEncodeHaibTfbsGm12878Pol24h8Pcr1xRawRep1 GM78 Pol2-4H8 PCR1 1 bigWig 0.106921 267.355011 GM12878 Pol2-4H8 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 116 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Pol2-4H8 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel GM78 Pol2-4H8 PCR1 1\ subGroups view=RawSignal factor=POL24H8 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Pol24h8Pcr1xRawRep1\ type bigWig 0.106921 267.355011\ wgEncodeUwTfbsGm06990CtcfStdHotspotsRep1 GM90 CTCF Ht 1 broadPeak GM06990 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 116 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM90 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3GM06990 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm06990CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeCaltechRnaSeqGm12891R2x75Il200SplicesRep1V2 GM91 2x75 Sp 1 bam GM12891 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 116 0 0 0 127 127 127 0 0 0 expression 1 longLabel GM12891 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel GM91 2x75 Sp 1\ subGroups view=Splices cellType=t3GM12891 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12891R2x75Il200SplicesRep1V2\ type bam\ wgEncodeAwgTfbsSydhH1hescMaxUcdUniPk H1-hESC MAX narrowPeak H1-hESC TFBS Uniform Peaks of Max from ENCODE/USC/Analysis 1 116 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of Max from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC MAX\ subGroups tier=a10 cellType=a10H1HESC factor=MAX lab=USC\ track wgEncodeAwgTfbsSydhH1hescMaxUcdUniPk\ wgEncodeSydhTfbsH1hescChd1a301218aIggrabSig H1ES CHD1 IgR bigWig 1.000000 22727.000000 H1-hESC CHD1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 116 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC CHD1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES CHD1 IgR\ subGroups view=Signal factor=CHD1A301218A cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescChd1a301218aIggrabSig\ type bigWig 1.000000 22727.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_ctss_rev Hes3-gfpCardiomyocyticInduction_Day02Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_reverse 0 116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep1.CNhs13654.13329-143B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13329-143B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_tpm_rev Hes3-gfpCardiomyocyticInduction_Day02Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_reverse 1 116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep1.CNhs13654.13329-143B8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13329-143B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvechRaw HMVEC-LBl Raw bigWig 1.000000 224166.000000 HMVEC-LBl DNaseI DGF Raw Signal from ENCODE/UW 0 116 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-LBl DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HMVEC-LBl Raw\ subGroups view=zRaw cellType=t3HMVECLBL treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvechRaw\ type bigWig 1.000000 224166.000000\ wgEncodeUwAffyExonArrayHrceSimpleSignalRep1 HRCEpiC 1 broadPeak HRCEpiC Exon array Signal Rep 1 from ENCODE/UW 0 116 0 0 0 127 127 127 0 0 0 expression 1 longLabel HRCEpiC Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HRCEpiC 1\ subGroups cellType=t3HRCEPIC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHrceSimpleSignalRep1\ type broadPeak\ wgEncodeDukeAffyExonIpscwru1SimpleSignalRep2 iPS_CWRU1 2 bigBed 6 + iPS (CWRU1) Exon array Signal Rep 2 from ENCODE/Duke 0 116 0 0 0 127 127 127 1 0 0 expression 1 longLabel iPS (CWRU1) Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel iPS_CWRU1 2\ subGroups cellType=t3IPSCWRU1 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonIpscwru1SimpleSignalRep2\ type bigBed 6 +\ wgEncodeCshlLongRnaSeqK562ChromatinTotalPlusRawSigRep4 K562 chrm tot + 2 bigWig 1.000000 1486821.000000 K562 chromatin total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 116 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 chromatin total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel K562 chrm tot + 2\ subGroups view=PlusSignal cellType=t1K562 localization=CHROMATIN rnaExtract=TOTAL rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqK562ChromatinTotalPlusRawSigRep4\ type bigWig 1.000000 1486821.000000\ wgEncodeBroadHistoneK562H3k27me3StdSig K562 H3K27m3 bigWig 0.040000 13777.200195 K562 H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 116 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal\ shortLabel K562 H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k27me3StdSig\ type bigWig 0.040000 13777.200195\ wgEncodeHaibMethylRrbsBcliver0111002BiochainSitesRep1 Liver BC 1 bed 9 + Liver BC 01-11002 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 116 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Liver BC 01-11002 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Liver BC 1\ subGroups cellType=t3LIVERBC0111002 obtainedBy=BioChain treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBcliver0111002BiochainSitesRep1\ type bed 9 +\ wgEncodeGisRnaPetMcf7CytosolPapMinusRawRep4 MCF7 cyto pA+ - 4 bigWig 1.000000 1226390.000000 MCF-7 cytosol polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS 2 116 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 cytosol polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel MCF7 cyto pA+ - 4\ subGroups view=v2MinusRawSignal cellType=bMCF7 cloned=Free localization=cytosol rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetMcf7CytosolPapMinusRawRep4\ type bigWig 1.000000 1226390.000000\ wgEncodeUwHistoneMcf7H3k4me3StdRawRep1 MCF7 H3K4M3 Sg 1 bigWig 1.000000 12643.000000 MCF-7 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 116 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel MCF7 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t2MCF7 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneMcf7H3k4me3StdRawRep1\ type bigWig 1.000000 12643.000000\ wgEncodeAwgDnaseDukeT47dUniPk T-47D DNase narrowPeak T-47D DNaseI HS Uniform Peaks from ENCODE/Analysis 1 116 0 0 0 127 127 127 1 0 0 regulation 1 longLabel T-47D DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel T-47D DNase\ subGroups tier=a30 cellType=T-47D\ track wgEncodeAwgDnaseDukeT47dUniPk\ pgNA20511indel TSI NA20511 indel pgSnp TSI NA20511 indel (Complete Genomics) 0 116 0 0 0 127 127 127 0 0 0 varRep 1 longLabel TSI NA20511 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel TSI NA20511 indel\ subGroups view=C_CG id=CI_div_GS20511 type=Indel\ track pgNA20511indel\ wgEncodeRikenCageA549CellPapAlnRep1 A549 cell pA+ A 1 bam A549 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 117 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel A549 cell pA+ A 1\ subGroups view=Alignments cellType=t2A549 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageA549CellPapAlnRep1\ type bam\ wgEncodeUwDnaseBe2cRawRep1 BE2 C Sg 1 bigWig 1.000000 217778.000000 BE2 C DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 117 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BE2 C DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel BE2 C Sg 1\ subGroups view=zRSig cellType=t3BE2C rep=rep1 treatment=None\ track wgEncodeUwDnaseBe2cRawRep1\ type bigWig 1.000000 217778.000000\ wgEncodeCshlShortRnaSeqCd20ro01794CellShorttotalTapPlusRep1 CD20 cell TAP + 1 bigWig 1.000000 1616914.000000 CD20+ TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 117 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD20+ TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel CD20 cell TAP + 1\ subGroups view=PlusSignal cellType=t2BCELLSCD20 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqCd20ro01794CellShorttotalTapPlusRep1\ type bigWig 1.000000 1616914.000000\ wgEncodeOpenChromDnaseFibropag08396BaseOverlapSignal FibroP OS bigWig 0.000000 352.000000 FibroP AG08396 DNaseI HS Overlap Signal from ENCODE/Duke 2 117 0 0 0 127 127 127 1 0 0 regulation 0 longLabel FibroP AG08396 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel FibroP OS\ subGroups view=SIGBO cellType=t3FIBROPAG08396 treatment=zNONE\ track wgEncodeOpenChromDnaseFibropag08396BaseOverlapSignal\ type bigWig 0.000000 352.000000\ wgEncodeUwRepliSeqGm06990PkRep1 GM06990 Pk 1 bed 9 GM06990 Repli-seq Peaks Rep 1 from ENCODE/UW 0 117 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM06990 Repli-seq Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPeaks off\ shortLabel GM06990 Pk 1\ subGroups view=v2Peaks cellType=t3GM06990 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm06990PkRep1\ type bed 9\ wgEncodeOpenChromChipGm10248CtcfPkRep1 GM10248 CTCF Pk narrowPeak GM10248 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 117 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM10248 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel GM10248 CTCF Pk\ subGroups view=Peaks factor=CTCF cellType=t3GM10248 treatment=AANONE\ track wgEncodeOpenChromChipGm10248CtcfPkRep1\ type narrowPeak\ encTfChipPkENCFF516AJC GM12878 ETV6 1 narrowPeak Transcription Factor ChIP-seq Peaks of ETV6 in GM12878 from ENCODE 3 (ENCFF516AJC) 1 117 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ETV6 in GM12878 from ENCODE 3 (ENCFF516AJC)\ parent encTfChipPk off\ shortLabel GM12878 ETV6 1\ subGroups cellType=GM12878 factor=ETV6\ track encTfChipPkENCFF516AJC\ wgEncodeHaibTfbsGm12878Pol24h8Pcr1xPkRep2 GM78 Pol2-4H8 PCR1 2 broadPeak GM12878 Pol2-4H8 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 117 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 Pol2-4H8 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel GM78 Pol2-4H8 PCR1 2\ subGroups view=Peaks factor=POL24H8 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Pol24h8Pcr1xPkRep2\ type broadPeak\ wgEncodeUwTfbsGm06990CtcfStdPkRep1 GM90 CTCF Pk 1 narrowPeak GM06990 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 117 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM90 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3GM06990 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm06990CtcfStdPkRep1\ type narrowPeak\ wgEncodeCaltechRnaSeqGm12891R2x75Il200SplicesRep2V2 GM91 2x75 Sp 2 bam GM12891 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 117 0 0 0 127 127 127 0 0 0 expression 1 longLabel GM12891 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel GM91 2x75 Sp 2\ subGroups view=Splices cellType=t3GM12891 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12891R2x75Il200SplicesRep2V2\ type bam\ wgEncodeAwgTfbsSydhH1hescMxi1IggrabUniPk H1-hESC MXI1 narrowPeak H1-hESC TFBS Uniform Peaks of Mxi1_(AF4185) from ENCODE/Stanford/Analysis 1 117 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of Mxi1_(AF4185) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC MXI1\ subGroups tier=a10 cellType=a10H1HESC factor=MXI1 lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescMxi1IggrabUniPk\ wgEncodeSydhTfbsH1hescChd2IggrabPk H1ES CHD2 IgR narrowPeak H1-hESC CHD2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 117 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC CHD2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES CHD2 IgR\ subGroups view=Peaks factor=CHD2 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescChd2IggrabPk\ type narrowPeak\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day02Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_forward 0 117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep2.CNhs13714.13341-143D2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13341-143D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day02Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_forward 1 117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep2.CNhs13714.13341-143D2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13341-143D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvecbHotspots HMVEC-LLy Hot broadPeak HMVEC-LLy DNaseI DGF Hotspots from ENCODE/UW 0 117 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-LLy DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HMVEC-LLy Hot\ subGroups view=Hotspots cellType=t3HMVECLLY treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvecbHotspots\ type broadPeak\ wgEncodeUwAffyExonArrayHrceSimpleSignalRep2 HRCEpiC 2 broadPeak HRCEpiC Exon array Signal Rep 2 from ENCODE/UW 0 117 0 0 0 127 127 127 0 0 0 expression 1 longLabel HRCEpiC Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HRCEpiC 2\ subGroups cellType=t3HRCEPIC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHrceSimpleSignalRep2\ type broadPeak\ wgEncodeDukeAffyExonIpsnihi11SimpleSignalRep1 iPS_NIHi11 1 bigBed 6 + iPS (NIHi11) Exon array Signal Rep 1 from ENCODE/Duke 0 117 0 0 0 127 127 127 1 0 0 expression 1 longLabel iPS (NIHi11) Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel iPS_NIHi11 1\ subGroups cellType=t3IPSNIHI11 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonIpsnihi11SimpleSignalRep1\ type bigBed 6 +\ wgEncodeCshlLongRnaSeqK562CytosolLongnonpolyaAlnRep1 K562 cyt pA- A 1 bam K562 cytosol polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 117 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel K562 cyt pA- A 1\ subGroups view=Alignments cellType=t1K562 localization=CYTOSOL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562CytosolLongnonpolyaAlnRep1\ type bam\ wgEncodeBroadHistoneK562H3k36me3StdPk K562 H3K36m3 broadPeak K562 H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 117 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks\ shortLabel K562 H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k36me3StdPk\ type broadPeak\ wgEncodeHaibMethylRrbsBcliver0111002BiochainSitesRep2 Liver_BC 2 bed 9 + Liver BC 01-11002 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 117 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Liver BC 01-11002 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Liver_BC 2\ subGroups cellType=t3LIVERBC0111002 obtainedBy=BioChain treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBcliver0111002BiochainSitesRep2\ type bed 9 +\ wgEncodeGisRnaPetMcf7CytosolPapPlusRawRep3 MCF7 cyto pA+ + 3 bigWig 1.000000 525132.000000 MCF-7 cytosol polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS 2 117 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 cytosol polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel MCF7 cyto pA+ + 3\ subGroups view=v2PlusRawSignal cellType=bMCF7 cloned=Free localization=cytosol rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetMcf7CytosolPapPlusRawRep3\ type bigWig 1.000000 525132.000000\ wgEncodeUwHistoneMcf7H3k04me3StdHotspotsRep2 MCF7 H3K4M3 Ht 2 broadPeak MCF-7 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 117 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel MCF7 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t2MCF7 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneMcf7H3k04me3StdHotspotsRep2\ type broadPeak\ wgEncodeAwgDnaseDukeTh0UniPk Th0 DNase narrowPeak Th0 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 117 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Th0 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Th0 DNase\ subGroups tier=a30 cellType=Th0\ track wgEncodeAwgDnaseDukeTh0UniPk\ pgNA18501 YRI NA18501 pgSnp YRI NA18501 (Complete Genomics) 0 117 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA18501 (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA18501\ subGroups view=C_CG id=CK_div_GS18501 type=SNP\ track pgNA18501\ wgEncodeRikenCageA549CellPapAlnRep2 A549 cell pA+ A 2 bam A549 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 118 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel A549 cell pA+ A 2\ subGroups view=Alignments cellType=t2A549 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageA549CellPapAlnRep2\ type bam\ wgEncodeUwDnaseBe2cHotspotsRep2 BE2 C Ht 2 broadPeak BE2 C DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 118 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BE2 C DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel BE2 C Ht 2\ subGroups view=Hot cellType=t3BE2C rep=rep2 treatment=None\ track wgEncodeUwDnaseBe2cHotspotsRep2\ type broadPeak\ wgEncodeCshlShortRnaSeqCd20ro01778CellShorttotalTapPlusRep2 CD20 cell TAP + 2 bigWig 1.000000 1459351.000000 CD20+ TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 118 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD20+ TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel CD20 cell TAP + 2\ subGroups view=PlusSignal cellType=t2BCELLSCD20 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqCd20ro01778CellShorttotalTapPlusRep2\ type bigWig 1.000000 1459351.000000\ wgEncodeOpenChromDnaseFibropag20443Pk FibroP Pk narrowPeak FibroP AG20443 DNaseI HS Peaks from ENCODE/Duke 3 118 0 0 0 127 127 127 1 0 0 regulation 1 longLabel FibroP AG20443 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel FibroP Pk\ subGroups view=Peaks cellType=t3FIBROPAG20443 treatment=zNONE\ track wgEncodeOpenChromDnaseFibropag20443Pk\ type narrowPeak\ wgEncodeUwRepliSeqGm06990ValleysRep1 GM06990 Vly 1 bed 9 GM06990 Repli-seq Valleys Rep 1 from ENCODE/UW 0 118 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM06990 Repli-seq Valleys Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewValleys off\ shortLabel GM06990 Vly 1\ subGroups view=v3Valleys cellType=t3GM06990 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm06990ValleysRep1\ type bed 9\ wgEncodeOpenChromChipGm10248CtcfSigRep1 GM10248 CTCF DS bigWig 0.000000 5.796300 GM10248 CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 118 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM10248 CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel GM10248 CTCF DS\ subGroups view=SIG factor=CTCF cellType=t3GM10248 treatment=AANONE\ track wgEncodeOpenChromChipGm10248CtcfSigRep1\ type bigWig 0.000000 5.796300\ encTfChipPkENCFF760IFZ GM12878 ETV6 2 narrowPeak Transcription Factor ChIP-seq Peaks of ETV6 in GM12878 from ENCODE 3 (ENCFF760IFZ) 1 118 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ETV6 in GM12878 from ENCODE 3 (ENCFF760IFZ)\ parent encTfChipPk off\ shortLabel GM12878 ETV6 2\ subGroups cellType=GM12878 factor=ETV6\ track encTfChipPkENCFF760IFZ\ wgEncodeHaibTfbsGm12878Pol24h8Pcr1xRawRep2 GM78 Pol2-4H8 PCR1 2 bigWig 0.025339 193.464005 GM12878 Pol2-4H8 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 118 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Pol2-4H8 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel GM78 Pol2-4H8 PCR1 2\ subGroups view=RawSignal factor=POL24H8 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Pol24h8Pcr1xRawRep2\ type bigWig 0.025339 193.464005\ wgEncodeUwTfbsGm06990CtcfStdRawRep1 GM90 CTCF Sg 1 bigWig 1.000000 6903.000000 GM06990 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 118 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM90 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3GM06990 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm06990CtcfStdRawRep1\ type bigWig 1.000000 6903.000000\ wgEncodeCaltechRnaSeqGm12892R2x75Il200AlignsRep1V2 GM92 2x75 A 1 bam GM12892 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 118 0 0 0 127 127 127 0 0 0 expression 1 longLabel GM12892 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel GM92 2x75 A 1\ subGroups view=Aligns cellType=t3GM12892 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12892R2x75Il200AlignsRep1V2\ type bam\ wgEncodeAwgTfbsSydhH1hescCmycIggrabUniPk H1-hESC MYC s narrowPeak H1-hESC TFBS Uniform Peaks of c-Myc from ENCODE/Stanford/Analysis 1 118 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of c-Myc from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC MYC s\ subGroups tier=a10 cellType=a10H1HESC factor=MYC lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescCmycIggrabUniPk\ wgEncodeSydhTfbsH1hescChd2IggrabSig H1ES CHD2 IgR bigWig 1.000000 15584.000000 H1-hESC CHD2 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 118 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC CHD2 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES CHD2 IgR\ subGroups view=Signal factor=CHD2 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescChd2IggrabSig\ type bigWig 1.000000 15584.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_ctss_rev Hes3-gfpCardiomyocyticInduction_Day02Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_reverse 0 118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep2.CNhs13714.13341-143D2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13341-143D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_tpm_rev Hes3-gfpCardiomyocyticInduction_Day02Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_reverse 1 118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep2.CNhs13714.13341-143D2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13341-143D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvecbPk HMVEC-LLy Pk narrowPeak HMVEC-LLy DNaseI DGF Peaks from ENCODE/UW 0 118 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-LLy DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HMVEC-LLy Pk\ subGroups view=Peaks cellType=t3HMVECLLY treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvecbPk\ type narrowPeak\ wgEncodeUwAffyExonArrayHreSimpleSignalRep1 HRE 1 broadPeak HRE Exon array Signal Rep 1 from ENCODE/UW 0 118 0 0 0 127 127 127 0 0 0 expression 1 longLabel HRE Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HRE 1\ subGroups cellType=t3HRE rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHreSimpleSignalRep1\ type broadPeak\ wgEncodeDukeAffyExonIpsnihi11SimpleSignalRep2 iPS_NIHi11 2 bigBed 6 + iPS (NIHi11) Exon array Signal Rep 2 from ENCODE/Duke 0 118 0 0 0 127 127 127 1 0 0 expression 1 longLabel iPS (NIHi11) Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel iPS_NIHi11 2\ subGroups cellType=t3IPSNIHI11 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonIpsnihi11SimpleSignalRep2\ type bigBed 6 +\ wgEncodeCshlLongRnaSeqK562CytosolLongnonpolyaAlnRep2 K562 cyt pA- A 2 bam K562 cytosol polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 118 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel K562 cyt pA- A 2\ subGroups view=Alignments cellType=t1K562 localization=CYTOSOL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562CytosolLongnonpolyaAlnRep2\ type bam\ wgEncodeBroadHistoneK562H3k36me3StdSig K562 H3K36m3 bigWig 0.040000 9564.440430 K562 H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 118 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal\ shortLabel K562 H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k36me3StdSig\ type bigWig 0.040000 9564.440430\ wgEncodeHaibMethylRrbsLncapAndroDukeSitesRep1 LNCaP Andro 1 bed 9 + LNCaP Androgen Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 118 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel LNCaP Androgen Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel LNCaP Andro 1\ subGroups cellType=t3LNCAP obtainedBy=DUKE treatment=ANDRO rep=rep1\ track wgEncodeHaibMethylRrbsLncapAndroDukeSitesRep1\ type bed 9 +\ wgEncodeGisRnaPetMcf7CytosolPapPlusRawRep4 MCF7 cyto pA+ + 4 bigWig 1.000000 473355.000000 MCF-7 cytosol polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS 2 118 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 cytosol polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel MCF7 cyto pA+ + 4\ subGroups view=v2PlusRawSignal cellType=bMCF7 cloned=Free localization=cytosol rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetMcf7CytosolPapPlusRawRep4\ type bigWig 1.000000 473355.000000\ wgEncodeUwHistoneMcf7H3k04me3StdPkRep2 MCF7 H3K4M3 Pk 2 narrowPeak MCF-7 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 118 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel MCF7 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t2MCF7 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneMcf7H3k04me3StdPkRep2\ type narrowPeak\ wgEncodeAwgDnaseUwdukeTh1UniPk Th1 DNase narrowPeak Th1 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 118 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Th1 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Th1 DNase\ subGroups tier=a30 cellType=Th1\ track wgEncodeAwgDnaseUwdukeTh1UniPk\ pgNA18501indel YRI NA18501 indel pgSnp YRI NA18501 indel (Complete Genomics) 0 118 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA18501 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA18501 indel\ subGroups view=C_CG id=CK_div_GS18501 type=Indel\ track pgNA18501indel\ wgEncodeUwDnaseBe2cPkRep2 BE2 C Pk 2 narrowPeak BE2 C DNaseI HS Peaks Rep 2 from ENCODE/UW 1 119 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BE2 C DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel BE2 C Pk 2\ subGroups view=Peaks cellType=t3BE2C rep=rep2 treatment=None\ track wgEncodeUwDnaseBe2cPkRep2\ type narrowPeak\ wgEncodeRikenCageCd20CellPapTssHmm CD20 cell pA+ bed 6 CD20+ whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 119 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD20+ whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel CD20 cell pA+\ subGroups view=TssHmm cellType=t2BCELLSCD20 localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageCd20CellPapTssHmm\ type bed 6\ wgEncodeOpenChromDnaseFibropag20443Sig FibroP DS bigWig 0.000000 0.798500 FibroP AG20443 DNaseI HS Density Signal from ENCODE/Duke 2 119 0 0 0 127 127 127 1 0 0 regulation 0 longLabel FibroP AG20443 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel FibroP DS\ subGroups view=SIG cellType=t3FIBROPAG20443 treatment=zNONE\ track wgEncodeOpenChromDnaseFibropag20443Sig\ type bigWig 0.000000 0.798500\ wgEncodeUwRepliSeqGm06990WaveSignalRep1 GM06990 Ws 1 bigWig -5.937394 86.593140 GM06990 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW 2 119 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewWaveSignal off\ shortLabel GM06990 Ws 1\ subGroups view=v4WaveSignal cellType=t3GM06990 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm06990WaveSignalRep1\ type bigWig -5.937394 86.593140\ wgEncodeOpenChromChipGm10248CtcfBaseOverlapSignalRep1 GM10248 CTCF OS bigWig 0.000000 2022.000000 GM10248 CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 119 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM10248 CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel GM10248 CTCF OS\ subGroups view=SIGBO factor=CTCF cellType=t3GM10248 treatment=AANONE\ track wgEncodeOpenChromChipGm10248CtcfBaseOverlapSignalRep1\ type bigWig 0.000000 2022.000000\ encTfChipPkENCFF678JII GM12878 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in GM12878 from ENCODE 3 (ENCFF678JII) 1 119 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of EZH2 in GM12878 from ENCODE 3 (ENCFF678JII)\ parent encTfChipPk off\ shortLabel GM12878 EZH2\ subGroups cellType=GM12878 factor=EZH2\ track encTfChipPkENCFF678JII\ wgEncodeHaibTfbsGm12878Pou2f2Pcr1xPkRep1 GM78 POU2F2 1 broadPeak GM12878 POU2F2 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 119 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 POU2F2 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 POU2F2 1\ subGroups view=Peaks factor=POU2F2 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Pou2f2Pcr1xPkRep1\ type broadPeak\ wgEncodeUwTfbsGm06990CtcfStdHotspotsRep2 GM90 CTCF Ht 2 broadPeak GM06990 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 119 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM90 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3GM06990 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm06990CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeCaltechRnaSeqGm12892R2x75Il200AlignsRep2V2 GM92 2x75 A 2 bam GM12892 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 119 0 0 0 127 127 127 0 0 0 expression 1 longLabel GM12892 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel GM92 2x75 A 2\ subGroups view=Aligns cellType=t3GM12892 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12892R2x75Il200AlignsRep2V2\ type bam\ wgEncodeAwgTfbsUtaH1hescCmycUniPk H1-hESC MYC t narrowPeak H1-hESC TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis 1 119 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC MYC t\ subGroups tier=a10 cellType=a10H1HESC factor=MYC lab=UT-A\ track wgEncodeAwgTfbsUtaH1hescCmycUniPk\ wgEncodeSydhTfbsH1hescCjunIggrabPk H1ES cJun IgR narrowPeak H1-hESC c-Jun IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 119 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC c-Jun IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES cJun IgR\ subGroups view=Peaks factor=CJUN cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescCjunIggrabPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapContigs HeLa cell TAP C bed 6 HeLa-S3 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 119 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HeLa cell TAP C\ subGroups view=Contigs cellType=t2HELAS3 localization=CELL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapContigs\ type bed 6\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day02Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_forward 0 119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep3.CNhs13726.13353-143E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13353-143E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day02Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_forward 1 119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep3.CNhs13726.13353-143E5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13353-143E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvecbSig HMVEC-LLy Sig bigWig 1.000000 108345.000000 HMVEC-LLy DNaseI DGF Per-base Signal from ENCODE/UW 2 119 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-LLy DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HMVEC-LLy Sig\ subGroups view=Signal cellType=t3HMVECLLY treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvecbSig\ type bigWig 1.000000 108345.000000\ wgEncodeUwAffyExonArrayHreSimpleSignalRep2 HRE 2 broadPeak HRE Exon array Signal Rep 2 from ENCODE/UW 0 119 0 0 0 127 127 127 0 0 0 expression 1 longLabel HRE Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HRE 2\ subGroups cellType=t3HRE rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHreSimpleSignalRep2\ type broadPeak\ wgEncodeDukeAffyExonIpsnihi7SimpleSignalRep1 iPS_NIHi7 1 bigBed 6 + iPS (NIHi7) Exon array Signal Rep 1 from ENCODE/Duke 0 119 0 0 0 127 127 127 1 0 0 expression 1 longLabel iPS (NIHi7) Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel iPS_NIHi7 1\ subGroups cellType=t3IPSNIHI7 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonIpsnihi7SimpleSignalRep1\ type bigBed 6 +\ wgEncodeCshlLongRnaSeqK562CytosolPamContigs K562 cyt pA- C bed 6 + K562 cytosol polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 119 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel K562 cyt pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1K562 localization=CYTOSOL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqK562CytosolPamContigs\ type bed 6 +\ wgEncodeBroadHistoneK562H3k79me2StdPk K562 H3K79m2 broadPeak K562 H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 119 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k79me2StdPk\ type broadPeak\ wgEncodeHaibMethylRrbsLncapDukeSitesRep1 LNCaP Duke 1 bed 9 + LNCaP Duke Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 119 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel LNCaP Duke Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel LNCaP Duke 1\ subGroups cellType=t3LNCAP obtainedBy=DUKE treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsLncapDukeSitesRep1\ type bed 9 +\ wgEncodeGisRnaPetMcf7CytosolPapAlnRep3 MCF7 cyto pA+ A 3 bam MCF-7 cytosol polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS 0 119 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 cytosol polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel MCF7 cyto pA+ A 3\ subGroups view=v3Alignments cellType=bMCF7 cloned=Free localization=cytosol rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetMcf7CytosolPapAlnRep3\ type bam\ wgEncodeUwHistoneMcf7H3k04me3StdRawRep2 MCF7 H3K4M3 Sg 2 bigWig 1.000000 6964.000000 MCF-7 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 119 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel MCF7 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t2MCF7 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneMcf7H3k04me3StdRawRep2\ type bigWig 1.000000 6964.000000\ wgEncodeAwgDnaseUwTh2UniPk Th2 DNase narrowPeak Th2 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 119 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Th2 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Th2 DNase\ subGroups tier=a30 cellType=Th2\ track wgEncodeAwgDnaseUwTh2UniPk\ pgNA18502 YRI NA18502 pgSnp YRI NA18502 (Complete Genomics) 0 119 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA18502 (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA18502\ subGroups view=C_CG id=CK_div_GS18502 type=SNP\ track pgNA18502\ wgEncodeUwDnaseBe2cRawRep2 BE2 C Sg 2 bigWig 1.000000 264051.000000 BE2 C DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 120 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BE2 C DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel BE2 C Sg 2\ subGroups view=zRSig cellType=t3BE2C rep=rep2 treatment=None\ track wgEncodeUwDnaseBe2cRawRep2\ type bigWig 1.000000 264051.000000\ wgEncodeRikenCageCd20CellPapPlusRawRep1 CD20 cell pA+ + 1 bigWig 1.000000 671911.000000 CD20+ whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 120 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD20+ whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel CD20 cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t2BCELLSCD20 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageCd20CellPapPlusRawRep1\ type bigWig 1.000000 671911.000000\ wgEncodeOpenChromDnaseFibropag20443BaseOverlapSignal FibroP OS bigWig 0.000000 341.000000 FibroP AG20443 DNaseI HS Overlap Signal from ENCODE/Duke 2 120 0 0 0 127 127 127 1 0 0 regulation 0 longLabel FibroP AG20443 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel FibroP OS\ subGroups view=SIGBO cellType=t3FIBROPAG20443 treatment=zNONE\ track wgEncodeOpenChromDnaseFibropag20443BaseOverlapSignal\ type bigWig 0.000000 341.000000\ wgEncodeUwRepliSeqGm06990SumSignalRep1 GM06990 Sd 1 bigWig 1.000000 2459.000000 GM06990 Repli-seq Summed Densities Rep 1 from ENCODE/UW 0 120 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 Repli-seq Summed Densities Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewSumSignal off\ shortLabel GM06990 Sd 1\ subGroups view=v5SumSignal cellType=t3GM06990 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm06990SumSignalRep1\ type bigWig 1.000000 2459.000000\ wgEncodeOpenChromChipGm10248InputSig GM10248 Input DS bigWig 0.000000 5.442500 GM10248 Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 120 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM10248 Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel GM10248 Input DS\ subGroups view=SIG factor=zCTRL cellType=t3GM10248 treatment=AANONE\ track wgEncodeOpenChromChipGm10248InputSig\ type bigWig 0.000000 5.442500\ encTfChipPkENCFF980KSV GM12878 FOXK2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXK2 in GM12878 from ENCODE 3 (ENCFF980KSV) 1 120 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of FOXK2 in GM12878 from ENCODE 3 (ENCFF980KSV)\ parent encTfChipPk off\ shortLabel GM12878 FOXK2\ subGroups cellType=GM12878 factor=FOXK2\ track encTfChipPkENCFF980KSV\ wgEncodeHaibTfbsGm12878Pou2f2Pcr1xRawRep1 GM78 POU2F2 1 bigWig 0.121305 129.796005 GM12878 POU2F2 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 120 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 POU2F2 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 POU2F2 1\ subGroups view=RawSignal factor=POU2F2 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Pou2f2Pcr1xRawRep1\ type bigWig 0.121305 129.796005\ wgEncodeUwTfbsGm06990CtcfStdPkRep2 GM90 CTCF Pk 2 narrowPeak GM06990 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 120 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM90 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3GM06990 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm06990CtcfStdPkRep2\ type narrowPeak\ wgEncodeCaltechRnaSeqGm12892R2x75Il200AlignsRep3V2 GM92 2x75 A 3 bam GM12892 200 bp paired read RNA-seq Alignments Rep 3 from ENCODE/Caltech 0 120 0 0 0 127 127 127 0 0 0 expression 1 longLabel GM12892 200 bp paired read RNA-seq Alignments Rep 3 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel GM92 2x75 A 3\ subGroups view=Aligns cellType=t3GM12892 insertLength=il200 readType=a1R2x75 rep=rep3 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12892R2x75Il200AlignsRep3V2\ type bam\ wgEncodeAwgTfbsHaibH1hescNanogsc33759V0416102UniPk H1-hESC NANOG narrowPeak H1-hESC TFBS Uniform Peaks of NANOG_(SC-33759) from ENCODE/HudsonAlpha/Analysis 1 120 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of NANOG_(SC-33759) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel H1-hESC NANOG\ subGroups tier=a10 cellType=a10H1HESC factor=NANOG lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescNanogsc33759V0416102UniPk\ wgEncodeSydhTfbsH1hescCjunIggrabSig H1ES cJun IgR bigWig 1.000000 13937.000000 H1-hESC c-Jun IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 120 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC c-Jun IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES cJun IgR\ subGroups view=Signal factor=CJUN cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescCjunIggrabSig\ type bigWig 1.000000 13937.000000\ wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapMinusRawRep1 HeLa cell TAP - 1 bigWig 1.000000 2422335.000000 HeLa-S3 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 120 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HeLa cell TAP - 1\ subGroups view=MinusSignal cellType=t2HELAS3 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapMinusRawRep1\ type bigWig 1.000000 2422335.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_ctss_rev Hes3-gfpCardiomyocyticInduction_Day02Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_reverse 0 120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep3.CNhs13726.13353-143E5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13353-143E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_tpm_rev Hes3-gfpCardiomyocyticInduction_Day02Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_reverse 1 120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep3.CNhs13726.13353-143E5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13353-143E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHmvecbRaw HMVEC-LLy Raw bigWig 1.000000 348513.000000 HMVEC-LLy DNaseI DGF Raw Signal from ENCODE/UW 0 120 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-LLy DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HMVEC-LLy Raw\ subGroups view=zRaw cellType=t3HMVECLLY treatment=aNONE rep=rep1\ track wgEncodeUwDgfHmvecbRaw\ type bigWig 1.000000 348513.000000\ wgEncodeUwAffyExonArrayHrgecSimpleSignalRep1 HRGEC 1 broadPeak HRGEC Exon array Signal Rep 1 from ENCODE/UW 0 120 0 0 0 127 127 127 0 0 0 expression 1 longLabel HRGEC Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HRGEC 1\ subGroups cellType=t3HRGEC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHrgecSimpleSignalRep1\ type broadPeak\ wgEncodeDukeAffyExonIpsnihi7SimpleSignalRep2 iPS_NIHi7 2 bigBed 6 + iPS (NIHi7) Exon array Signal Rep 2 from ENCODE/Duke 0 120 0 0 0 127 127 127 1 0 0 expression 1 longLabel iPS (NIHi7) Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel iPS_NIHi7 2\ subGroups cellType=t3IPSNIHI7 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonIpsnihi7SimpleSignalRep2\ type bigBed 6 +\ wgEncodeCshlLongRnaSeqK562CytosolPamJunctions K562 cyt pA- J bed 6 + K562 cytosol polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 120 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel K562 cyt pA- J\ subGroups view=Junctions cellType=t1K562 localization=CYTOSOL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqK562CytosolPamJunctions\ type bed 6 +\ wgEncodeBroadHistoneK562H3k79me2StdSig K562 H3K79m2 bigWig 0.040000 5517.479980 K562 H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 120 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H3k79me2StdSig\ type bigWig 0.040000 5517.479980\ wgEncodeHaibMethylRrbsLncapUwSitesRep1 LNCaP UW 1 bed 9 + LNCaP UW Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 120 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel LNCaP UW Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel LNCaP UW 1\ subGroups cellType=t3LNCAP obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsLncapUwSitesRep1\ type bed 9 +\ wgEncodeGisRnaPetMcf7CytosolPapAlnRep4 MCF7 cyto pA+ A 4 bam MCF-7 cytosol polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS 0 120 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 cytosol polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel MCF7 cyto pA+ A 4\ subGroups view=v3Alignments cellType=bMCF7 cloned=Free localization=cytosol rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetMcf7CytosolPapAlnRep4\ type bam\ wgEncodeUwHistoneMcf7InputStdRawRep1 MCF7 In Sg 1 bigWig 1.000000 25597.000000 MCF-7 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 120 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel MCF7 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t2MCF7 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneMcf7InputStdRawRep1\ type bigWig 1.000000 25597.000000\ wgEncodeAwgDnaseDukeUrotheliaUniPk Urothelia DNase narrowPeak Urothelia DNaseI HS Uniform Peaks from ENCODE/Analysis 1 120 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Urothelia DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Urothelia DNase\ subGroups tier=a30 cellType=Urothelia\ track wgEncodeAwgDnaseDukeUrotheliaUniPk\ pgNA18502indel YRI NA18502 indel pgSnp YRI NA18502 indel (Complete Genomics) 0 120 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA18502 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA18502 indel\ subGroups view=C_CG id=CK_div_GS18502 type=Indel\ track pgNA18502indel\ wgEncodeUwDnaseBjHotspotsRep1 BJ Ht 1 broadPeak BJ DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 121 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel BJ Ht 1\ subGroups view=Hot cellType=t3BJ rep=rep1 treatment=None\ track wgEncodeUwDnaseBjHotspotsRep1\ type broadPeak\ wgEncodeUwHistoneMonocd14ro1746H3k04me3StdHotspotsRep1 CD14 H3K4M3 Ht 1 broadPeak Monocytes-CD14+ RO 01746 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 121 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Monocytes-CD14+ RO 01746 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel CD14 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t2MONOCYTESCD14RO01746 treatment=zNone rep=rep1\ track wgEncodeUwHistoneMonocd14ro1746H3k04me3StdHotspotsRep1\ type broadPeak\ wgEncodeRikenCageCd20CellPapPlusRawRep2 CD20 cell pA+ + 2 bigWig 1.000000 870557.000000 CD20+ whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 121 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD20+ whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel CD20 cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t2BCELLSCD20 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageCd20CellPapPlusRawRep2\ type bigWig 1.000000 870557.000000\ wgEncodeOpenChromDnaseFrontalcortexocPk Front crtx Pk narrowPeak Frontal cortex OC DNaseI HS Peaks from ENCODE/Duke 3 121 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Frontal cortex OC DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Front crtx Pk\ subGroups view=Peaks cellType=t3FRONTALCORTEXOC treatment=zNONE\ track wgEncodeOpenChromDnaseFrontalcortexocPk\ type narrowPeak\ wgEncodeOpenChromChipGm10266CtcfPkRep1 GM10266 CTCF Pk narrowPeak GM10266 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 121 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM10266 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel GM10266 CTCF Pk\ subGroups view=Peaks factor=CTCF cellType=t3GM10266 treatment=AANONE\ track wgEncodeOpenChromChipGm10266CtcfPkRep1\ type narrowPeak\ wgEncodeUwRepliSeqGm12801G1bPctSignalRep1 GM12801 G1b 1 bigWig 1.000000 100.000000 GM12801 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 121 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12801 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12801 G1b 1\ subGroups view=v1PctSignal cellType=t3GM12801 phase=p1G1B rep=rep1\ track wgEncodeUwRepliSeqGm12801G1bPctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF116EXQ GM12878 GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in GM12878 from ENCODE 3 (ENCFF116EXQ) 1 121 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of GABPA in GM12878 from ENCODE 3 (ENCFF116EXQ)\ parent encTfChipPk off\ shortLabel GM12878 GABPA\ subGroups cellType=GM12878 factor=GABPA\ track encTfChipPkENCFF116EXQ\ wgEncodeHaibTfbsGm12878Pou2f2Pcr1xPkRep2 GM78 POU2F2 2 broadPeak GM12878 POU2F2 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 121 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 POU2F2 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 POU2F2 2\ subGroups view=Peaks factor=POU2F2 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Pou2f2Pcr1xPkRep2\ type broadPeak\ wgEncodeUwTfbsGm06990CtcfStdRawRep2 GM90 CTCF Sg 2 bigWig 1.000000 8819.000000 GM06990 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 121 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM90 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3GM06990 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm06990CtcfStdRawRep2\ type bigWig 1.000000 8819.000000\ wgEncodeCaltechRnaSeqGm12892R2x75Th1014Il200SigRep1V4 GM92 2x75 Sg 1 bigWig 0.017200 152652.671875 GM12892 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech 2 121 0 0 0 127 127 127 0 0 0 expression 0 longLabel GM12892 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel GM92 2x75 Sg 1\ subGroups view=Signal cellType=t3GM12892 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12892R2x75Th1014Il200SigRep1V4\ type bigWig 0.017200 152652.671875\ wgEncodeAwgTfbsSydhH1hescNrf1IggrabUniPk H1-hESC NRF1 narrowPeak H1-hESC TFBS Uniform Peaks of Nrf1 from ENCODE/Stanford/Analysis 1 121 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of Nrf1 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC NRF1\ subGroups tier=a10 cellType=a10H1HESC factor=NRF1 lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescNrf1IggrabUniPk\ wgEncodeSydhTfbsH1hescCmycIggrabPk H1ES cMyc IgR narrowPeak H1-hESC c-Myc IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 121 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC c-Myc IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES cMyc IgR\ subGroups view=Peaks factor=CMYC cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescCmycIggrabPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapMinusRawRep2 HeLa cell TAP - 2 bigWig 1.000000 2126399.000000 HeLa-S3 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 121 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HeLa cell TAP - 2\ subGroups view=MinusSignal cellType=t2HELAS3 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapMinusRawRep2\ type bigWig 1.000000 2126399.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day03Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_forward 0 121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep1.CNhs13655.13330-143B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13330-143B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day03Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_forward 1 121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep1.CNhs13655.13330-143B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13330-143B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHpafHotspots HPAF Hot broadPeak HPAF DNaseI DGF Hotspots from ENCODE/UW 0 121 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAF DNaseI DGF Hotspots from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HPAF Hot\ subGroups view=Hotspots cellType=t3HPAF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHpafHotspots\ type broadPeak\ wgEncodeUwAffyExonArrayHrgecSimpleSignalRep2 HRGEC 2 broadPeak HRGEC Exon array Signal Rep 2 from ENCODE/UW 0 121 0 0 0 127 127 127 0 0 0 expression 1 longLabel HRGEC Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HRGEC 2\ subGroups cellType=t3HRGEC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHrgecSimpleSignalRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqK562CytosolLongnonpolyaMinusRawSigRep1 K562 cyt pA- - 1 bigWig 1.000000 6589672.000000 K562 cytosol polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 121 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel K562 cyt pA- - 1\ subGroups view=MinusSignal cellType=t1K562 localization=CYTOSOL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562CytosolLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 6589672.000000\ wgEncodeBroadHistoneK562H4k20me1StdPk K562 H4K20m1 broadPeak K562 H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 121 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H4k20me1StdPk\ type broadPeak\ wgEncodeDukeAffyExonLncapAndroSimpleSignalRep1V2 LNCaP ANDRO 1 bigBed 6 + LNCaP Methyltrienolone Exon array Signal Rep 1 from ENCODE/Duke 0 121 0 119 158 127 187 206 1 0 0 expression 1 color 0,119,158\ longLabel LNCaP Methyltrienolone Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel LNCaP ANDRO 1\ subGroups cellType=t3LNCAP treatment=METHYLTRI rep=rep1\ track wgEncodeDukeAffyExonLncapAndroSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeHaibMethylRrbsLncapAndroDukeSitesRep2 LNCaP Andro 2 bed 9 + LNCaP Androgen Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 121 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel LNCaP Androgen Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel LNCaP Andro 2\ subGroups cellType=t3LNCAP obtainedBy=DUKE treatment=ANDRO rep=rep2\ track wgEncodeHaibMethylRrbsLncapAndroDukeSitesRep2\ type bed 9 +\ wgEncodeGisRnaPetMcf7NucleusPapClusters MCF7 nucl pA+ bed 6 + MCF-7 nucleus polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS 2 121 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 nucleus polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel MCF7 nucl pA+\ subGroups view=v1Clusters cellType=bMCF7 cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=none\ track wgEncodeGisRnaPetMcf7NucleusPapClusters\ type bed 6 +\ wgEncodeAwgDnaseDukeUrotheliaut189UniPk Urothel(UT) DNase narrowPeak Urothelia (UT189) DNaseI HS Uniform Peaks from ENCODE/Analysis 1 121 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Urothelia (UT189) DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel Urothel(UT) DNase\ subGroups tier=a30 cellType=Urothelia-UT189\ track wgEncodeAwgDnaseDukeUrotheliaut189UniPk\ pgNA18504 YRI NA18504 pgSnp YRI NA18504 (Complete Genomics) 0 121 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA18504 (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA18504\ subGroups view=C_CG id=CK_div_GS18504 type=SNP\ track pgNA18504\ wgEncodeUwDnaseBjPkRep1 BJ Pk 1 narrowPeak BJ DNaseI HS Peaks Rep 1 from ENCODE/UW 1 122 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel BJ Pk 1\ subGroups view=Peaks cellType=t3BJ rep=rep1 treatment=None\ track wgEncodeUwDnaseBjPkRep1\ type narrowPeak\ wgEncodeUwHistoneMonocd14ro1746H3k04me3StdPkRep1 CD14 H3K4M3 Pk 1 narrowPeak Monocytes-CD14+ RO 01746 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 122 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Monocytes-CD14+ RO 01746 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel CD14 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t2MONOCYTESCD14RO01746 treatment=zNone rep=rep1\ track wgEncodeUwHistoneMonocd14ro1746H3k04me3StdPkRep1\ type narrowPeak\ wgEncodeRikenCageCd20CellPapMinusRawRep1 CD20 cell pA+ - 1 bigWig 1.000000 1631330.000000 CD20+ whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 122 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD20+ whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel CD20 cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t2BCELLSCD20 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageCd20CellPapMinusRawRep1\ type bigWig 1.000000 1631330.000000\ wgEncodeOpenChromDnaseFrontalcortexocSig Front crtx DS bigWig 0.000000 2.190400 Frontal cortex OC DNaseI HS Density Signal from ENCODE/Duke 2 122 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Frontal cortex OC DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Front crtx DS\ subGroups view=SIG cellType=t3FRONTALCORTEXOC treatment=zNONE\ track wgEncodeOpenChromDnaseFrontalcortexocSig\ type bigWig 0.000000 2.190400\ wgEncodeOpenChromChipGm10266CtcfSigRep1 GM10266 CTCF DS bigWig 0.000000 5.693500 GM10266 CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 122 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM10266 CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel GM10266 CTCF DS\ subGroups view=SIG factor=CTCF cellType=t3GM10266 treatment=AANONE\ track wgEncodeOpenChromChipGm10266CtcfSigRep1\ type bigWig 0.000000 5.693500\ wgEncodeUwRepliSeqGm12801S1PctSignalRep1 GM12801 S1 1 bigWig 1.000000 100.000000 GM12801 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 122 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12801 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12801 S1 1\ subGroups view=v1PctSignal cellType=t3GM12801 phase=p2S1 rep=rep1\ track wgEncodeUwRepliSeqGm12801S1PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF456YII GM12878 GATAD2B narrowPeak Transcription Factor ChIP-seq Peaks of GATAD2B in GM12878 from ENCODE 3 (ENCFF456YII) 1 122 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of GATAD2B in GM12878 from ENCODE 3 (ENCFF456YII)\ parent encTfChipPk off\ shortLabel GM12878 GATAD2B\ subGroups cellType=GM12878 factor=GATAD2B\ track encTfChipPkENCFF456YII\ wgEncodeHaibTfbsGm12878Pou2f2Pcr1xRawRep2 GM78 POU2F2 2 bigWig 0.066840 119.193001 GM12878 POU2F2 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 122 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 POU2F2 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 POU2F2 2\ subGroups view=RawSignal factor=POU2F2 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Pou2f2Pcr1xRawRep2\ type bigWig 0.066840 119.193001\ wgEncodeUwTfbsGm06990InputStdRawRep1 GM90 In Sg 1 bigWig 1.000000 8015.000000 GM06990 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 122 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM90 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3GM06990 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm06990InputStdRawRep1\ type bigWig 1.000000 8015.000000\ wgEncodeCaltechRnaSeqGm12892R2x75Th1014Il200SigRep2V4 GM92 2x75 Sg 2 bigWig 0.016100 316681.500000 GM12892 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech 2 122 0 0 0 127 127 127 0 0 0 expression 0 longLabel GM12892 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel GM92 2x75 Sg 2\ subGroups view=Signal cellType=t3GM12892 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12892R2x75Th1014Il200SigRep2V4\ type bigWig 0.016100 316681.500000\ wgEncodeAwgTfbsHaibH1hescPol24h8V0416102UniPk H1-hESC POLR2A h narrowPeak H1-hESC TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis 1 122 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel H1-hESC POLR2A h\ subGroups tier=a10 cellType=a10H1HESC factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescPol24h8V0416102UniPk\ wgEncodeSydhTfbsH1hescCmycIggrabSig H1ES cMyc IgR bigWig 1.000000 26576.000000 H1-hESC c-Myc IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 122 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC c-Myc IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES cMyc IgR\ subGroups view=Signal factor=CMYC cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescCmycIggrabSig\ type bigWig 1.000000 26576.000000\ wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapPlusRawRep1 HeLa cell TAP + 1 bigWig 1.000000 3201336.000000 HeLa-S3 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 122 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HeLa cell TAP + 1\ subGroups view=PlusSignal cellType=t2HELAS3 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapPlusRawRep1\ type bigWig 1.000000 3201336.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_ctss_rev Hes3-gfpCardiomyocyticInduction_Day03Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_reverse 0 122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep1.CNhs13655.13330-143B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13330-143B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_tpm_rev Hes3-gfpCardiomyocyticInduction_Day03Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_reverse 1 122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep1.CNhs13655.13330-143B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13330-143B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHpafPk HPAF Pk narrowPeak HPAF DNaseI DGF Peaks from ENCODE/UW 0 122 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAF DNaseI DGF Peaks from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HPAF Pk\ subGroups view=Peaks cellType=t3HPAF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHpafPk\ type narrowPeak\ wgEncodeUwAffyExonArrayHrpeSimpleSignalRep1 HRPEpiC 1 broadPeak HRPEpiC Exon array Signal Rep 1 from ENCODE/UW 0 122 0 0 0 127 127 127 0 0 0 expression 1 longLabel HRPEpiC Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HRPEpiC 1\ subGroups cellType=t3HRPEPIC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHrpeSimpleSignalRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqK562CytosolLongnonpolyaMinusRawSigRep2 K562 cyt pA- - 2 bigWig 1.000000 11296614.000000 K562 cytosol polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 122 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel K562 cyt pA- - 2\ subGroups view=MinusSignal cellType=t1K562 localization=CYTOSOL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562CytosolLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 11296614.000000\ wgEncodeBroadHistoneK562H4k20me1StdSig K562 H4K20m1 bigWig 0.040000 12717.959961 K562 H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 122 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562H4k20me1StdSig\ type bigWig 0.040000 12717.959961\ wgEncodeDukeAffyExonLncapAndroSimpleSignalRep2V2 LNCaP ANDRO 2 bigBed 6 + LNCaP Methyltrienolone Exon array Signal Rep 2 from ENCODE/Duke 0 122 0 119 158 127 187 206 1 0 0 expression 1 color 0,119,158\ longLabel LNCaP Methyltrienolone Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel LNCaP ANDRO 2\ subGroups cellType=t3LNCAP treatment=METHYLTRI rep=rep2\ track wgEncodeDukeAffyExonLncapAndroSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeHaibMethylRrbsLncapDukeSitesRep2 LNCaP Duke 2 bed 9 + LNCaP Duke Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 122 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel LNCaP Duke Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel LNCaP Duke 2\ subGroups cellType=t3LNCAP obtainedBy=DUKE treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsLncapDukeSitesRep2\ type bed 9 +\ wgEncodeGisRnaPetMcf7NucleusPapMinusRawRep3 MCF7 nucl pA+ - 3 bigWig 1.000000 1025580.000000 MCF-7 nucleus polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS 2 122 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 nucleus polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel MCF7 nucl pA+ - 3\ subGroups view=v2MinusRawSignal cellType=bMCF7 cloned=Free localization=nucleus rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetMcf7NucleusPapMinusRawRep3\ type bigWig 1.000000 1025580.000000\ wgEncodeAwgDnaseUwWerirb1UniPk WERI-Rb-1 DNase narrowPeak WERI-Rb-1 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 122 0 0 0 127 127 127 1 0 0 regulation 1 longLabel WERI-Rb-1 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel WERI-Rb-1 DNase\ subGroups tier=a30 cellType=WERI-Rb-1\ track wgEncodeAwgDnaseUwWerirb1UniPk\ pgNA18504indel YRI NA18504 indel pgSnp YRI NA18504 indel (Complete Genomics) 0 122 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA18504 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA18504 indel\ subGroups view=C_CG id=CK_div_GS18504 type=Indel\ track pgNA18504indel\ wgEncodeUwDnaseBjRawRep1 BJ Sg 1 bigWig 1.000000 76204.000000 BJ DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 123 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel BJ Sg 1\ subGroups view=zRSig cellType=t3BJ rep=rep1 treatment=None\ track wgEncodeUwDnaseBjRawRep1\ type bigWig 1.000000 76204.000000\ wgEncodeUwHistoneMonocd14ro1746H3k04me3StdRawRep1 CD14 H3K4M3 Sg 1 bigWig 1.000000 4008.000000 Monocytes-CD14+ RO 01746 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 123 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Monocytes-CD14+ RO 01746 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel CD14 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t2MONOCYTESCD14RO01746 treatment=zNone rep=rep1\ track wgEncodeUwHistoneMonocd14ro1746H3k04me3StdRawRep1\ type bigWig 1.000000 4008.000000\ wgEncodeRikenCageCd20CellPapMinusRawRep2 CD20 cell pA+ - 2 bigWig 1.000000 2021030.000000 CD20+ whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 123 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD20+ whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel CD20 cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t2BCELLSCD20 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageCd20CellPapMinusRawRep2\ type bigWig 1.000000 2021030.000000\ wgEncodeOpenChromDnaseFrontalcortexocBaseOverlapSignal Front crtx OS bigWig 0.000000 253.000000 Frontal cortex OC DNaseI HS Overlap Signal from ENCODE/Duke 2 123 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Frontal cortex OC DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Front crtx OS\ subGroups view=SIGBO cellType=t3FRONTALCORTEXOC treatment=zNONE\ track wgEncodeOpenChromDnaseFrontalcortexocBaseOverlapSignal\ type bigWig 0.000000 253.000000\ wgEncodeUwTfbsGm12801CtcfStdHotspotsRep1 GM01 CTCF Ht 1 broadPeak GM12801 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 123 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12801 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM01 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3GM12801 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12801CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeOpenChromChipGm10266CtcfBaseOverlapSignalRep1 GM10266 CTCF OS bigWig 0.000000 1274.000000 GM10266 CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 123 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM10266 CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel GM10266 CTCF OS\ subGroups view=SIGBO factor=CTCF cellType=t3GM10266 treatment=AANONE\ track wgEncodeOpenChromChipGm10266CtcfBaseOverlapSignalRep1\ type bigWig 0.000000 1274.000000\ wgEncodeUwRepliSeqGm12801S2PctSignalRep1 GM12801 S2 1 bigWig 1.000000 100.000000 GM12801 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 123 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12801 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12801 S2 1\ subGroups view=v1PctSignal cellType=t3GM12801 phase=p3S2 rep=rep1\ track wgEncodeUwRepliSeqGm12801S2PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF208TRU GM12878 HCFC1 on narrowPeak Transcription Factor ChIP-seq Peaks of HCFC1 in GM12878 from ENCODE 3 (ENCFF208TRU) 1 123 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of HCFC1 in GM12878 from ENCODE 3 (ENCFF208TRU)\ parent encTfChipPk off\ shortLabel GM12878 HCFC1 on\ subGroups cellType=GM12878 factor=HCFC1\ track encTfChipPkENCFF208TRU\ wgEncodeHaibTfbsGm12878Pou2f2Pcr1xPkRep3 GM78 POU2F2 3 broadPeak GM12878 POU2F2 PCR1x ChIP-seq Peaks Rep 3 from ENCODE/HAIB 3 123 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 POU2F2 PCR1x ChIP-seq Peaks Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 POU2F2 3\ subGroups view=Peaks factor=POU2F2 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep3\ track wgEncodeHaibTfbsGm12878Pou2f2Pcr1xPkRep3\ type broadPeak\ wgEncodeCaltechRnaSeqGm12892R2x75Th1014Il200SigRep3V4 GM92 2x75 Sg 3 bigWig 0.004200 551821.000000 GM12892 200 bp paired read RNA-seq Signal Rep 3 from ENCODE/Caltech 2 123 0 0 0 127 127 127 0 0 0 expression 0 longLabel GM12892 200 bp paired read RNA-seq Signal Rep 3 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel GM92 2x75 Sg 3\ subGroups view=Signal cellType=t3GM12892 insertLength=il200 readType=a1R2x75 rep=rep3 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12892R2x75Th1014Il200SigRep3V4\ type bigWig 0.004200 551821.000000\ wgEncodeAwgTfbsHaibH1hescPol2V0416102UniPk H1-hESC POLR2A h2 narrowPeak H1-hESC TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis 1 123 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC POLR2A h2\ subGroups tier=a10 cellType=a10H1HESC factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescPol2V0416102UniPk\ wgEncodeSydhTfbsH1hescCtbp2UcdPk H1ES CBP2 UCD narrowPeak H1-hESC CtBP2 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 123 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC CtBP2 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES CBP2 UCD\ subGroups view=Peaks factor=CTBP2 cellType=t1H1HESC control=UCD treatment=aNONE\ track wgEncodeSydhTfbsH1hescCtbp2UcdPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapPlusRawRep2 HeLa cell TAP + 2 bigWig 1.000000 8168482.000000 HeLa-S3 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 123 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HeLa cell TAP + 2\ subGroups view=PlusSignal cellType=t2HELAS3 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapPlusRawRep2\ type bigWig 1.000000 8168482.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day03Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_forward 0 123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep2.CNhs13715.13342-143D3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13342-143D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day03Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_forward 1 123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep2.CNhs13715.13342-143D3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13342-143D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHpafSig HPAF Sig bigWig 1.000000 32861.000000 HPAF DNaseI DGF Per-base Signal from ENCODE/UW 2 123 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPAF DNaseI DGF Per-base Signal from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewSignal off\ shortLabel HPAF Sig\ subGroups view=Signal cellType=t3HPAF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHpafSig\ type bigWig 1.000000 32861.000000\ wgEncodeUwAffyExonArrayHrpeSimpleSignalRep2 HRPEpiC 2 broadPeak HRPEpiC Exon array Signal Rep 2 from ENCODE/UW 0 123 0 0 0 127 127 127 0 0 0 expression 1 longLabel HRPEpiC Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HRPEpiC 2\ subGroups cellType=t3HRPEPIC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHrpeSimpleSignalRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqK562CytosolLongnonpolyaPlusRawSigRep1 K562 cyt pA- + 1 bigWig 1.000000 23953612.000000 K562 cytosol polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 123 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel K562 cyt pA- + 1\ subGroups view=PlusSignal cellType=t1K562 localization=CYTOSOL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562CytosolLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 23953612.000000\ wgEncodeBroadHistoneK562Hdac1sc6298StdPk K562 HDAC1 broadPeak K562 HDAC1 (SC-6298) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 123 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 HDAC1 (SC-6298) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 HDAC1\ subGroups view=Peaks factor=HDAC1SC6298 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Hdac1sc6298StdPk\ type broadPeak\ wgEncodeDukeAffyExonLncapSimpleSignalRep1V2 LNCaP 1 bigBed 6 + LNCaP Exon array Signal Rep 1 from ENCODE/Duke 0 123 0 119 158 127 187 206 1 0 0 expression 1 color 0,119,158\ longLabel LNCaP Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel LNCaP 1\ subGroups cellType=t3LNCAP treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonLncapSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeHaibMethylRrbsLncapUwSitesRep2 LNCaP UW 2 bed 9 + LNCaP UW Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 123 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel LNCaP UW Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel LNCaP UW 2\ subGroups cellType=t3LNCAP obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsLncapUwSitesRep2\ type bed 9 +\ wgEncodeGisRnaPetMcf7NucleusPapMinusRawRep4 MCF7 nucl pA+ - 4 bigWig 1.000000 1388160.000000 MCF-7 nucleus polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS 2 123 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 nucleus polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel MCF7 nucl pA+ - 4\ subGroups view=v2MinusRawSignal cellType=bMCF7 cloned=Free localization=nucleus rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetMcf7NucleusPapMinusRawRep4\ type bigWig 1.000000 1388160.000000\ wgEncodeAwgDnaseUwWi38UniPk WI-38 DNase narrowPeak WI-38 DNaseI HS Uniform Peaks from ENCODE/Analysis 1 123 0 0 0 127 127 127 1 0 0 regulation 1 longLabel WI-38 DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel WI-38 DNase\ subGroups tier=a30 cellType=WI-38\ track wgEncodeAwgDnaseUwWi38UniPk\ pgNA18505 YRI NA18505 pgSnp YRI NA18505 (Complete Genomics) 0 123 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA18505 (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA18505\ subGroups view=C_CG id=CK_div_GS18505 type=SNP\ track pgNA18505\ wgEncodeUwDnaseBjHotspotsRep2 BJ Ht 2 broadPeak BJ DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 124 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel BJ Ht 2\ subGroups view=Hot cellType=t3BJ rep=rep2 treatment=None\ track wgEncodeUwDnaseBjHotspotsRep2\ type broadPeak\ wgEncodeUwHistoneMonocd14ro1746H3k27me3StdHotspotsRep1 CD14 H3K27M3 Ht 1 broadPeak Monocytes-CD14+ RO 01746 H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 124 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Monocytes-CD14+ RO 01746 H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel CD14 H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t2MONOCYTESCD14RO01746 treatment=zNone rep=rep1\ track wgEncodeUwHistoneMonocd14ro1746H3k27me3StdHotspotsRep1\ type broadPeak\ wgEncodeRikenCageCd20CellPapAlnRep1 CD20 cell pA+ A 1 bam CD20+ whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 124 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD20+ whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel CD20 cell pA+ A 1\ subGroups view=Alignments cellType=t2BCELLSCD20 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageCd20CellPapAlnRep1\ type bam\ wgEncodeOpenChromDnaseGcbcellPk GC B cell Pk narrowPeak GC B cell DNaseI HS Peaks from ENCODE/Duke 3 124 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GC B cell DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel GC B cell Pk\ subGroups view=Peaks cellType=t3GCBCELL treatment=zNONE\ track wgEncodeOpenChromDnaseGcbcellPk\ type narrowPeak\ wgEncodeUwTfbsGm12801CtcfStdPkRep1 GM01 CTCF Pk 1 narrowPeak GM12801 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 124 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12801 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM01 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3GM12801 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12801CtcfStdPkRep1\ type narrowPeak\ wgEncodeOpenChromChipGm10266InputSig GM10266 Input DS bigWig 0.000000 3.460200 GM10266 Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 124 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM10266 Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel GM10266 Input DS\ subGroups view=SIG factor=zCTRL cellType=t3GM10266 treatment=AANONE\ track wgEncodeOpenChromChipGm10266InputSig\ type bigWig 0.000000 3.460200\ wgEncodeUwRepliSeqGm12801S3PctSignalRep1 GM12801 S3 1 bigWig 1.000000 100.000000 GM12801 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 124 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12801 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12801 S3 1\ subGroups view=v1PctSignal cellType=t3GM12801 phase=p4S3 rep=rep1\ track wgEncodeUwRepliSeqGm12801S3PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF107UHX GM12878 HDAC2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in GM12878 from ENCODE 3 (ENCFF107UHX) 1 124 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in GM12878 from ENCODE 3 (ENCFF107UHX)\ parent encTfChipPk off\ shortLabel GM12878 HDAC2\ subGroups cellType=GM12878 factor=HDAC2\ track encTfChipPkENCFF107UHX\ wgEncodeHaibTfbsGm12878Pou2f2Pcr1xRawRep3 GM78 POU2F2 3 bigWig 0.220496 144.203995 GM12878 POU2F2 PCR1x ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB 2 124 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 POU2F2 PCR1x ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 POU2F2 3\ subGroups view=RawSignal factor=POU2F2 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep3\ track wgEncodeHaibTfbsGm12878Pou2f2Pcr1xRawRep3\ type bigWig 0.220496 144.203995\ wgEncodeCaltechRnaSeqGm12892R2x75Il200SplicesRep1V2 GM92 2x75 Sp 1 bam GM12892 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 124 0 0 0 127 127 127 0 0 0 expression 1 longLabel GM12892 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel GM92 2x75 Sp 1\ subGroups view=Splices cellType=t3GM12892 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12892R2x75Il200SplicesRep1V2\ type bam\ wgEncodeAwgTfbsUtaH1hescPol2UniPk H1-hESC POLR2A t narrowPeak H1-hESC TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis 1 124 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC POLR2A t\ subGroups tier=a10 cellType=a10H1HESC factor=POLR2A lab=UT-A\ track wgEncodeAwgTfbsUtaH1hescPol2UniPk\ wgEncodeSydhTfbsH1hescCtbp2UcdSig H1ES CBP2 UCD bigWig 1.000000 2699.000000 H1-hESC CtBP2 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 124 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC CtBP2 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES CBP2 UCD\ subGroups view=Signal factor=CTBP2 cellType=t1H1HESC control=UCD treatment=aNONE\ track wgEncodeSydhTfbsH1hescCtbp2UcdSig\ type bigWig 1.000000 2699.000000\ wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapContigs HeLa cyto TAP C bed 6 HeLa-S3 TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL 2 124 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HeLa cyto TAP C\ subGroups view=Contigs cellType=t2HELAS3 localization=CYTOSOL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapContigs\ type bed 6\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_ctss_rev Hes3-gfpCardiomyocyticInduction_Day03Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_reverse 0 124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep2.CNhs13715.13342-143D3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13342-143D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_tpm_rev Hes3-gfpCardiomyocyticInduction_Day03Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_reverse 1 124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep2.CNhs13715.13342-143D3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13342-143D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHpafRaw HPAF Raw bigWig 1.000000 193977.000000 HPAF DNaseI DGF Raw Signal from ENCODE/UW 0 124 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPAF DNaseI DGF Raw Signal from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HPAF Raw\ subGroups view=zRaw cellType=t3HPAF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHpafRaw\ type bigWig 1.000000 193977.000000\ wgEncodeUwAffyExonArrayHsmmSimpleSignalRep1 HSMM 1 broadPeak HSMM Exon array Signal Rep 1 from ENCODE/UW 0 124 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSMM Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HSMM 1\ subGroups cellType=t3HSMM rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHsmmSimpleSignalRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqK562CytosolLongnonpolyaPlusRawSigRep2 K562 cyt pA- + 2 bigWig 1.000000 31500754.000000 K562 cytosol polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 124 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel K562 cyt pA- + 2\ subGroups view=PlusSignal cellType=t1K562 localization=CYTOSOL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562CytosolLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 31500754.000000\ wgEncodeBroadHistoneK562Hdac1sc6298StdSig K562 HDAC1 bigWig 0.040000 36277.398438 K562 HDAC1 (SC-6298) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 124 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 HDAC1 (SC-6298) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 HDAC1\ subGroups view=Signal factor=HDAC1SC6298 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Hdac1sc6298StdSig\ type bigWig 0.040000 36277.398438\ wgEncodeDukeAffyExonLncapSimpleSignalRep2V2 LNCaP 2 bigBed 6 + LNCaP Exon array Signal Rep 2 from ENCODE/Duke 0 124 0 119 158 127 187 206 1 0 0 expression 1 color 0,119,158\ longLabel LNCaP Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel LNCaP 2\ subGroups cellType=t3LNCAP treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonLncapSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeHaibMethylRrbsBclung0111002BiochainSitesRep1 Lung BC 1 bed 9 + Lung BC 01-11002 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 124 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Lung BC 01-11002 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Lung BC 1\ subGroups cellType=t3LUNGBC0111002 obtainedBy=BioChain treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBclung0111002BiochainSitesRep1\ type bed 9 +\ wgEncodeGisRnaPetMcf7NucleusPapPlusRawRep3 MCF7 nucl pA+ + 3 bigWig 1.000000 907448.000000 MCF-7 nucleus polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS 2 124 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 nucleus polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel MCF7 nucl pA+ + 3\ subGroups view=v2PlusRawSignal cellType=bMCF7 cloned=Free localization=nucleus rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetMcf7NucleusPapPlusRawRep3\ type bigWig 1.000000 907448.000000\ wgEncodeAwgDnaseUwWi38tamoxifentamoxifenUniPk WI-38(Tamo) DNase narrowPeak WI-38 (Tamoxifen) DNaseI HS Uniform Peaks from ENCODE/Analysis 1 124 0 0 0 127 127 127 1 0 0 regulation 1 longLabel WI-38 (Tamoxifen) DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel WI-38(Tamo) DNase\ subGroups tier=a30 cellType=WI-38-Tamox\ track wgEncodeAwgDnaseUwWi38tamoxifentamoxifenUniPk\ pgNA18505indel YRI NA18505 indel pgSnp YRI NA18505 indel (Complete Genomics) 0 124 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA18505 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA18505 indel\ subGroups view=C_CG id=CK_div_GS18505 type=Indel\ track pgNA18505indel\ wgEncodeAwgDnaseDuke8988tUniPk 8988T DNase narrowPeak 8988T DNaseI HS Uniform Peaks from ENCODE/Analysis 1 125 0 0 0 127 127 127 1 0 0 regulation 1 longLabel 8988T DNaseI HS Uniform Peaks from ENCODE/Analysis\ parent wgEncodeAwgDnaseUniform off\ shortLabel 8988T DNase\ subGroups tier=a30 cellType=a8988T\ track wgEncodeAwgDnaseDuke8988tUniPk\ wgEncodeUwDnaseBjPkRep2 BJ Pk 2 narrowPeak BJ DNaseI HS Peaks Rep 2 from ENCODE/UW 1 125 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel BJ Pk 2\ subGroups view=Peaks cellType=t3BJ rep=rep2 treatment=None\ track wgEncodeUwDnaseBjPkRep2\ type narrowPeak\ wgEncodeUwHistoneMonocd14ro1746H3k27me3StdPkRep1 CD14 H3K27M3 Pk 1 narrowPeak Monocytes-CD14+ RO 01746 H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 125 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Monocytes-CD14+ RO 01746 H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel CD14 H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t2MONOCYTESCD14RO01746 treatment=zNone rep=rep1\ track wgEncodeUwHistoneMonocd14ro1746H3k27me3StdPkRep1\ type narrowPeak\ wgEncodeRikenCageCd20CellPapAlnRep2 CD20 cell pA+ A 2 bam CD20+ whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 125 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD20+ whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel CD20 cell pA+ A 2\ subGroups view=Alignments cellType=t2BCELLSCD20 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageCd20CellPapAlnRep2\ type bam\ wgEncodeOpenChromDnaseGcbcellSig GC B cell DS bigWig 0.000000 1.097000 GC B cell DNaseI HS Density Signal from ENCODE/Duke 2 125 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GC B cell DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel GC B cell DS\ subGroups view=SIG cellType=t3GCBCELL treatment=zNONE\ track wgEncodeOpenChromDnaseGcbcellSig\ type bigWig 0.000000 1.097000\ wgEncodeUwTfbsGm12801CtcfStdRawRep1 GM01 CTCF Sg 1 bigWig 1.000000 1190.000000 GM12801 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 125 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12801 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM01 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3GM12801 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12801CtcfStdRawRep1\ type bigWig 1.000000 1190.000000\ wgEncodeUwRepliSeqGm12801S4PctSignalRep1 GM12801 S4 1 bigWig 1.000000 100.000000 GM12801 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 125 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12801 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12801 S4 1\ subGroups view=v1PctSignal cellType=t3GM12801 phase=p5S4 rep=rep1\ track wgEncodeUwRepliSeqGm12801S4PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF109YBE GM12878 HDAC6 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC6 in GM12878 from ENCODE 3 (ENCFF109YBE) 1 125 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of HDAC6 in GM12878 from ENCODE 3 (ENCFF109YBE)\ parent encTfChipPk off\ shortLabel GM12878 HDAC6\ subGroups cellType=GM12878 factor=HDAC6\ track encTfChipPkENCFF109YBE\ wgEncodeOpenChromChipGm12891CtcfPk GM12891 CTCF Pk narrowPeak GM12891 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 125 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM12891 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel GM12891 CTCF Pk\ subGroups treatment=AANONE view=Peaks factor=CTCF cellType=t3GM12891\ track wgEncodeOpenChromChipGm12891CtcfPk\ type narrowPeak\ wgEncodeHaibTfbsGm12878Pu1Pcr1xPkRep1 GM78 PU.1 PCR1 1 broadPeak GM12878 PU.1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 125 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 PU.1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 PU.1 PCR1 1\ subGroups view=Peaks factor=PU1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Pu1Pcr1xPkRep1\ type broadPeak\ wgEncodeCaltechRnaSeqGm12892R2x75Il200SplicesRep2V2 GM92 2x75 Sp 2 bam GM12892 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 125 0 0 0 127 127 127 0 0 0 expression 1 longLabel GM12892 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel GM92 2x75 Sp 2\ subGroups view=Splices cellType=t3GM12892 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12892R2x75Il200SplicesRep2V2\ type bam\ wgEncodeAwgTfbsHaibH1hescPou5f1sc9081V0416102UniPk H1-hESC POU5F1 on narrowPeak H1-hESC TFBS Uniform Peaks of POU5F1_(SC-9081) from ENCODE/HudsonAlpha/Analysis 1 125 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of POU5F1_(SC-9081) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC POU5F1 on\ subGroups tier=a10 cellType=a10H1HESC factor=POU5F1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescPou5f1sc9081V0416102UniPk\ wgEncodeSydhTfbsH1hescGtf2f1IggrabPk H1ES GT2F IgR narrowPeak H1-hESC GTF2F1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 125 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC GTF2F1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES GT2F IgR\ subGroups view=Peaks factor=GTF2F1 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescGtf2f1IggrabPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapMinusRawRep1 HeLa cyto TAP - 1 bigWig 1.000000 3180380.000000 HeLa-S3 TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 125 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HeLa cyto TAP - 1\ subGroups view=MinusSignal cellType=t2HELAS3 localization=CYTOSOL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapMinusRawRep1\ type bigWig 1.000000 3180380.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day03Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_forward 0 125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep3.CNhs13727.13354-143E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13354-143E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day03Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_forward 1 125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep3.CNhs13727.13354-143E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13354-143E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHpdlfHotspots HPdLF Hot broadPeak HPdLF DNaseI DGF Hotspots from ENCODE/UW 0 125 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPdLF DNaseI DGF Hotspots from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HPdLF Hot\ subGroups view=Hotspots cellType=t3HPDLF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHpdlfHotspots\ type broadPeak\ wgEncodeUwAffyExonArrayHsmmSimpleSignalRep2 HSMM 2 broadPeak HSMM Exon array Signal Rep 2 from ENCODE/UW 0 125 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSMM Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HSMM 2\ subGroups cellType=t3HSMM rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHsmmSimpleSignalRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqK562CytosolPapAlnRep1 K562 cyt pA+ A 1 bam K562 cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 125 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel K562 cyt pA+ A 1\ subGroups view=Alignments cellType=t1K562 localization=CYTOSOL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562CytosolPapAlnRep1\ type bam\ wgEncodeBroadHistoneK562Hdac2a300705aStdPk K562 HDAC2 broadPeak K562 HDAC2 (A300-705A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 125 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 HDAC2 (A300-705A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 HDAC2\ subGroups view=Peaks factor=HDAC2A300705A cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Hdac2a300705aStdPk\ type broadPeak\ wgEncodeHaibMethylRrbsBclung0111002BiochainSitesRep2 Lung BC 2 bed 9 + Lung BC 01-11002 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 125 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Lung BC 01-11002 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Lung BC 2\ subGroups cellType=t3LUNGBC0111002 obtainedBy=BioChain treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBclung0111002BiochainSitesRep2\ type bed 9 +\ wgEncodeGisRnaPetMcf7NucleusPapPlusRawRep4 MCF7 nucl pA+ + 4 bigWig 1.000000 1052440.000000 MCF-7 nucleus polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS 2 125 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 nucleus polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel MCF7 nucl pA+ + 4\ subGroups view=v2PlusRawSignal cellType=bMCF7 cloned=Free localization=nucleus rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetMcf7NucleusPapPlusRawRep4\ type bigWig 1.000000 1052440.000000\ wgEncodeDukeAffyExonMedulloSimpleSignalRep1V2 Medullo 1 bigBed 6 + Medullo Exon array Signal Rep 1 from ENCODE/Duke 0 125 0 0 0 127 127 127 1 0 0 expression 1 longLabel Medullo Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Medullo 1\ subGroups cellType=t3MEDULLO treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonMedulloSimpleSignalRep1V2\ type bigBed 6 +\ pgNA18508 YRI NA18508 pgSnp YRI NA18508 (Complete Genomics) 0 125 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA18508 (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA18508\ subGroups view=C_CG id=CK_div_GS18508 type=SNP\ track pgNA18508\ wgEncodeUwDnaseBjRawRep2 BJ Sg 2 bigWig 1.000000 25429.000000 BJ DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 126 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel BJ Sg 2\ subGroups view=zRSig cellType=t3BJ rep=rep2 treatment=None\ track wgEncodeUwDnaseBjRawRep2\ type bigWig 1.000000 25429.000000\ wgEncodeUwHistoneMonocd14ro1746H3k27me3StdRawRep1 CD14 H3K27M3 Sg 1 bigWig 1.000000 7779.000000 Monocytes-CD14+ RO 01746 H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 126 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Monocytes-CD14+ RO 01746 H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel CD14 H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t2MONOCYTESCD14RO01746 treatment=zNone rep=rep1\ track wgEncodeUwHistoneMonocd14ro1746H3k27me3StdRawRep1\ type bigWig 1.000000 7779.000000\ wgEncodeOpenChromDnaseGcbcellBaseOverlapSignal GC B cell OS bigWig 0.000000 242.000000 GC B cell DNaseI HS Overlap Signal from ENCODE/Duke 2 126 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GC B cell DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel GC B cell OS\ subGroups view=SIGBO cellType=t3GCBCELL treatment=zNONE\ track wgEncodeOpenChromDnaseGcbcellBaseOverlapSignal\ type bigWig 0.000000 242.000000\ wgEncodeUwTfbsGm12801InputStdRawRep1 GM01 In Sg 1 bigWig 1.000000 10337.000000 GM12801 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 126 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12801 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM01 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3GM12801 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12801InputStdRawRep1\ type bigWig 1.000000 10337.000000\ wgEncodeUwRepliSeqGm12801G2PctSignalRep1 GM12801 G2 1 bigWig 1.000000 100.000000 GM12801 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 126 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12801 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12801 G2 1\ subGroups view=v1PctSignal cellType=t3GM12801 phase=p6G2 rep=rep1\ track wgEncodeUwRepliSeqGm12801G2PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF308ZGG GM12878 HSF1 narrowPeak Transcription Factor ChIP-seq Peaks of HSF1 in GM12878 from ENCODE 3 (ENCFF308ZGG) 1 126 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of HSF1 in GM12878 from ENCODE 3 (ENCFF308ZGG)\ parent encTfChipPk off\ shortLabel GM12878 HSF1\ subGroups cellType=GM12878 factor=HSF1\ track encTfChipPkENCFF308ZGG\ wgEncodeOpenChromChipGm12891CtcfSig GM12891 CTCF DS bigWig 0.000000 16.499300 GM12891 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 126 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM12891 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel GM12891 CTCF DS\ subGroups treatment=AANONE view=SIG factor=CTCF cellType=t3GM12891\ track wgEncodeOpenChromChipGm12891CtcfSig\ type bigWig 0.000000 16.499300\ wgEncodeHaibTfbsGm12878Pu1Pcr1xRawRep1 GM78 PU.1 PCR1 1 bigWig 0.204042 514.492004 GM12878 PU.1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 126 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 PU.1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 PU.1 PCR1 1\ subGroups view=RawSignal factor=PU1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Pu1Pcr1xRawRep1\ type bigWig 0.204042 514.492004\ wgEncodeCaltechRnaSeqGm12892R2x75Il200SplicesRep3V2 GM92 2x75 Sp 3 bam GM12892 200 bp paired read RNA-seq Splices Rep 3 from ENCODE/Caltech 0 126 0 0 0 127 127 127 0 0 0 expression 1 longLabel GM12892 200 bp paired read RNA-seq Splices Rep 3 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel GM92 2x75 Sp 3\ subGroups view=Splices cellType=t3GM12892 insertLength=il200 readType=a1R2x75 rep=rep3 treatment=aNone\ track wgEncodeCaltechRnaSeqGm12892R2x75Il200SplicesRep3V2\ type bam\ wgEncodeAwgTfbsHaibH1hescRad21V0416102UniPk H1-hESC RAD21 h narrowPeak H1-hESC TFBS Uniform Peaks of Rad21 from ENCODE/HudsonAlpha/Analysis 1 126 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of Rad21 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC RAD21 h\ subGroups tier=a10 cellType=a10H1HESC factor=RAD21 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescRad21V0416102UniPk\ wgEncodeSydhTfbsH1hescGtf2f1IggrabSig H1ES GT2F IgR bigWig 1.000000 14827.000000 H1-hESC GTF2F1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 126 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC GTF2F1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES GT2F IgR\ subGroups view=Signal factor=GTF2F1 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescGtf2f1IggrabSig\ type bigWig 1.000000 14827.000000\ wgEncodeRikenCageHelas3CytosolPamTssHmmV2 HeLa cyto pA- bed 6 HeLa-S3 cytosol polyA - CAGE TSS HMM from ENCODE/RIKEN 3 126 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 cytosol polyA - CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HeLa cyto pA-\ subGroups view=TssHmm cellType=t2HELAS3 localization=cytosol rnaExtract=pAM rep=rep0 rank=rankP\ track wgEncodeRikenCageHelas3CytosolPamTssHmmV2\ type bed 6\ wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapMinusRawRep2 HeLa cyto TAP - 2 bigWig 1.000000 2337266.000000 HeLa-S3 TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 126 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HeLa cyto TAP - 2\ subGroups view=MinusSignal cellType=t2HELAS3 localization=CYTOSOL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapMinusRawRep2\ type bigWig 1.000000 2337266.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_ctss_rev Hes3-gfpCardiomyocyticInduction_Day03Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_reverse 0 126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep3.CNhs13727.13354-143E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13354-143E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_tpm_rev Hes3-gfpCardiomyocyticInduction_Day03Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_reverse 1 126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep3.CNhs13727.13354-143E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13354-143E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHpdlfPk HPdLF Pk narrowPeak HPdLF DNaseI DGF Peaks from ENCODE/UW 0 126 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPdLF DNaseI DGF Peaks from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HPdLF Pk\ subGroups view=Peaks cellType=t3HPDLF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHpdlfPk\ type narrowPeak\ wgEncodeUwAffyExonArrayHsmmtSimpleSignalRep1 HSMMtube 1 broadPeak HSMMtube Exon array Signal Rep 1 from ENCODE/UW 0 126 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSMMtube Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HSMMtube 1\ subGroups cellType=t3HSMMTUBE rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHsmmtSimpleSignalRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqK562CytosolPapAlnRep2 K562 cyt pA+ A 2 bam K562 cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 126 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel K562 cyt pA+ A 2\ subGroups view=Alignments cellType=t1K562 localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562CytosolPapAlnRep2\ type bam\ wgEncodeBroadHistoneK562Hdac2a300705aStdSig K562 HDAC2 bigWig 0.040000 26424.599609 K562 HDAC2 (A300-705A) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 126 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 HDAC2 (A300-705A) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 HDAC2\ subGroups view=Signal factor=HDAC2A300705A cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Hdac2a300705aStdSig\ type bigWig 0.040000 26424.599609\ wgEncodeHaibMethylRrbsMcf10aesTamStanfordSitesRep1 MCF10A Tam 1 bed 9 + MCF10A Tamoxifen Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 126 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A Tamoxifen Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel MCF10A Tam 1\ subGroups cellType=t3MCF10AERSRC obtainedBy=Stanford treatment=TAM rep=rep1\ track wgEncodeHaibMethylRrbsMcf10aesTamStanfordSitesRep1\ type bed 9 +\ wgEncodeGisRnaPetMcf7NucleusPapAlnRep3 MCF7 nucl pA+ A 3 bam MCF-7 nucleus polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS 0 126 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 nucleus polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel MCF7 nucl pA+ A 3\ subGroups view=v3Alignments cellType=bMCF7 cloned=Free localization=nucleus rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetMcf7NucleusPapAlnRep3\ type bam\ wgEncodeDukeAffyExonMedulloSimpleSignalRep2V2 Medullo 2 bigBed 6 + Medullo Exon array Signal Rep 2 from ENCODE/Duke 0 126 0 0 0 127 127 127 1 0 0 expression 1 longLabel Medullo Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Medullo 2\ subGroups cellType=t3MEDULLO treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonMedulloSimpleSignalRep2V2\ type bigBed 6 +\ pgNA18508indel YRI NA18508 indel pgSnp YRI NA18508 indel (Complete Genomics) 0 126 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA18508 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA18508 indel\ subGroups view=C_CG id=CK_div_GS18508 type=Indel\ track pgNA18508indel\ wgEncodeUwDnaseHs27aHotspotsRep1 Bon MarHS27a Ht 1 broadPeak Bone Marrow HS27a DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 127 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Bone Marrow HS27a DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel Bon MarHS27a Ht 1\ subGroups view=Hot cellType=t3BONEMARROWHS27A treatment=None rep=rep1\ track wgEncodeUwDnaseHs27aHotspotsRep1\ type broadPeak\ wgEncodeUwHistoneMonocd14ro1746InputStdRawRep1 CD14 In Sg 1 bigWig 1.000000 3306.000000 Monocytes-CD14+ RO 01746 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 127 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Monocytes-CD14+ RO 01746 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel CD14 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t2MONOCYTESCD14RO01746 treatment=zNone rep=rep1\ track wgEncodeUwHistoneMonocd14ro1746InputStdRawRep1\ type bigWig 1.000000 3306.000000\ wgEncodeOpenChromDnaseGlioblaPk Gliobla Pk narrowPeak Gliobla DNaseI HS Peaks from ENCODE/Duke 3 127 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Gliobla DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Gliobla Pk\ subGroups view=Peaks cellType=t3GLIOBLA treatment=zNONE\ track wgEncodeOpenChromDnaseGlioblaPk\ type narrowPeak\ wgEncodeUwRepliSeqGm12801PkRep1 GM12801 Pk 1 bed 9 GM12801 Repli-seq Peaks Rep 1 from ENCODE/UW 0 127 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM12801 Repli-seq Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPeaks off\ shortLabel GM12801 Pk 1\ subGroups view=v2Peaks cellType=t3GM12801 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm12801PkRep1\ type bed 9\ encTfChipPkENCFF073XZC GM12878 IKZF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF073XZC) 1 127 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF073XZC)\ parent encTfChipPk off\ shortLabel GM12878 IKZF1 1\ subGroups cellType=GM12878 factor=IKZF1\ track encTfChipPkENCFF073XZC\ wgEncodeOpenChromChipGm12891CtcfBaseOverlapSignal GM12891 CTCF OS bigWig 0.000000 3417.000000 GM12891 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 127 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM12891 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel GM12891 CTCF OS\ subGroups treatment=AANONE view=SIGBO factor=CTCF cellType=t3GM12891\ track wgEncodeOpenChromChipGm12891CtcfBaseOverlapSignal\ type bigWig 0.000000 3417.000000\ wgEncodeUwTfbsGm12864CtcfStdHotspotsRep1 GM64 CTCF Ht 1 broadPeak GM12864 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 127 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12864 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM64 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3GM12864 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12864CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsGm12878Pu1Pcr1xPkRep2 GM78 PU.1 PCR1 2 broadPeak GM12878 PU.1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 127 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 PU.1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 PU.1 PCR1 2\ subGroups view=Peaks factor=PU1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Pu1Pcr1xPkRep2\ type broadPeak\ wgEncodeAwgTfbsSydhH1hescRad21IggrabUniPk H1-hESC RAD21 s narrowPeak H1-hESC TFBS Uniform Peaks of Rad21 from ENCODE/Stanford/Analysis 1 127 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of Rad21 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC RAD21 s\ subGroups tier=a10 cellType=a10H1HESC factor=RAD21 lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescRad21IggrabUniPk\ wgEncodeSydhTfbsH1hescJundIggrabPk H1ES JunD IgR narrowPeak H1-hESC JunD IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 127 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC JunD IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES JunD IgR\ subGroups view=Peaks factor=JUND cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescJundIggrabPk\ type narrowPeak\ wgEncodeCaltechRnaSeqHct116R2x75Il200AlignsRep1V2 HCT6 2x75 A 1 bam HCT-116 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 127 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCT-116 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel HCT6 2x75 A 1\ subGroups view=Aligns cellType=t3HCT116 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHct116R2x75Il200AlignsRep1V2\ type bam\ wgEncodeRikenCageHelas3CytosolPamPlusSignal HeLa cyto pA- + 1 bigWig 0.140000 55619.878906 HeLa-S3 cytosol polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 127 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 cytosol polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HeLa cyto pA- + 1\ subGroups rep=rep0 rank=rank1 view=PlusRawSignal cellType=t2HELAS3 localization=cytosol rnaExtract=pAM\ track wgEncodeRikenCageHelas3CytosolPamPlusSignal\ type bigWig 0.140000 55619.878906\ wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapPlusRawRep1 HeLa cyto TAP + 1 bigWig 1.000000 3223305.000000 HeLa-S3 TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 127 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HeLa cyto TAP + 1\ subGroups view=PlusSignal cellType=t2HELAS3 localization=CYTOSOL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapPlusRawRep1\ type bigWig 1.000000 3223305.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day04Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_forward 0 127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep1.CNhs13656.13331-143C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13331-143C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day04Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_forward 1 127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep1.CNhs13656.13331-143C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13331-143C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHpdlfSig HPdLF Sig bigWig 1.000000 100346.000000 HPdLF DNaseI DGF Per-base Signal from ENCODE/UW 2 127 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPdLF DNaseI DGF Per-base Signal from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewSignal off\ shortLabel HPdLF Sig\ subGroups view=Signal cellType=t3HPDLF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHpdlfSig\ type bigWig 1.000000 100346.000000\ wgEncodeUwAffyExonArrayHsmmtSimpleSignalRep2 HSMMtube 2 broadPeak HSMMtube Exon-array Signal Rep 2 from ENCODE/UW 0 127 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSMMtube Exon-array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HSMMtube 2\ subGroups cellType=t3HSMMTUBE rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHsmmtSimpleSignalRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqK562CytosolPapContigs K562 cyt pA+ C bed 6 + K562 cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 127 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel K562 cyt pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1K562 localization=CYTOSOL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqK562CytosolPapContigs\ type bed 6 +\ wgEncodeBroadHistoneK562Hdac6a301341aPk K562 HDAC6 broadPeak K562 HDAC6 (A301-341A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 127 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 HDAC6 (A301-341A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 HDAC6\ subGroups view=Peaks factor=HDAC6A301341A cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Hdac6a301341aPk\ type broadPeak\ wgEncodeHaibMethylRrbsMcf10aesStanfordSitesRep1 MCF10A 1 bed 9 + MCF10A Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 127 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel MCF10A 1\ subGroups cellType=t3MCF10AERSRC obtainedBy=Stanford treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsMcf10aesStanfordSitesRep1\ type bed 9 +\ wgEncodeGisRnaPetMcf7NucleusPapAlnRep4 MCF7 nucl pA+ A 4 bam MCF-7 nucleus polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS 0 127 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 nucleus polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel MCF7 nucl pA+ A 4\ subGroups view=v3Alignments cellType=bMCF7 cloned=Free localization=nucleus rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetMcf7NucleusPapAlnRep4\ type bam\ wgEncodeDukeAffyExonMedulloSimpleSignalRep3V2 Medullo 3 bigBed 6 + Medullo Exon array Signal Rep 3 from ENCODE/Duke 0 127 0 0 0 127 127 127 1 0 0 expression 1 longLabel Medullo Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Medullo 3\ subGroups cellType=t3MEDULLO treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonMedulloSimpleSignalRep3V2\ type bigBed 6 +\ pgNA18517 YRI NA18517 pgSnp YRI NA18517 (Complete Genomics) 0 127 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA18517 (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA18517\ subGroups view=C_CG id=CK_div_GS18517 type=SNP\ track pgNA18517\ wgEncodeUwHistoneAg04449H3k4me3StdHotspotsRep1 AG49 H3K4M3 Ht 1 broadPeak AG04449 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 128 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04449 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel AG49 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3AG04449 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg04449H3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseHs27aPkRep1 Bon MarHS27a Pk 1 narrowPeak Bone Marrow HS27a DNaseI HS Peaks Rep 1 from ENCODE/UW 1 128 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Bone Marrow HS27a DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Bon MarHS27a Pk 1\ subGroups view=Peaks cellType=t3BONEMARROWHS27A treatment=None rep=rep1\ track wgEncodeUwDnaseHs27aPkRep1\ type narrowPeak\ wgEncodeOpenChromDnaseGlioblaSig Gliobla DS bigWig 0.000000 1.195300 Gliobla DNaseI HS Density Signal from ENCODE/Duke 2 128 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Gliobla DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Gliobla DS\ subGroups view=SIG cellType=t3GLIOBLA treatment=zNONE\ track wgEncodeOpenChromDnaseGlioblaSig\ type bigWig 0.000000 1.195300\ wgEncodeUwRepliSeqGm12801ValleysRep1 GM12801 Vly 1 bed 9 GM12801 Repli-seq Valleys Rep 1 from ENCODE/UW 0 128 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM12801 Repli-seq Valleys Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewValleys off\ shortLabel GM12801 Vly 1\ subGroups view=v3Valleys cellType=t3GM12801 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm12801ValleysRep1\ type bed 9\ encTfChipPkENCFF809OOE GM12878 IKZF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF809OOE) 1 128 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF809OOE)\ parent encTfChipPk off\ shortLabel GM12878 IKZF1 2\ subGroups cellType=GM12878 factor=IKZF1\ track encTfChipPkENCFF809OOE\ wgEncodeOpenChromChipGm12892CtcfPk GM12892 CTCF Pk narrowPeak GM12892 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 128 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM12892 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel GM12892 CTCF Pk\ subGroups treatment=AANONE view=Peaks factor=CTCF cellType=t3GM12892\ track wgEncodeOpenChromChipGm12892CtcfPk\ type narrowPeak\ wgEncodeUwTfbsGm12864CtcfStdPkRep1 GM64 CTCF Pk 1 narrowPeak GM12864 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 128 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12864 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM64 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3GM12864 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12864CtcfStdPkRep1\ type narrowPeak\ wgEncodeHaibTfbsGm12878Pu1Pcr1xRawRep2 GM78 PU.1 PCR1 2 bigWig 0.111357 104.898003 GM12878 PU.1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 128 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 PU.1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 PU.1 PCR1 2\ subGroups view=RawSignal factor=PU1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Pu1Pcr1xRawRep2\ type bigWig 0.111357 104.898003\ wgEncodeAwgTfbsBroadH1hescRbbp5a300109aUniPk H1-hESC RBBP5 narrowPeak H1-hESC TFBS Uniform Peaks of RBBP5_(A300-109A) from ENCODE/Broad/Analysis 1 128 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of RBBP5_(A300-109A) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC RBBP5\ subGroups tier=a10 cellType=a10H1HESC factor=RBBP5 lab=Broad\ track wgEncodeAwgTfbsBroadH1hescRbbp5a300109aUniPk\ wgEncodeSydhTfbsH1hescJundIggrabSig H1ES JunD IgR bigWig 1.000000 18707.000000 H1-hESC JunD IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 128 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC JunD IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES JunD IgR\ subGroups view=Signal factor=JUND cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescJundIggrabSig\ type bigWig 1.000000 18707.000000\ wgEncodeCaltechRnaSeqHct116R2x75Il200AlignsRep2V2 HCT6 2x75 A 2 bam HCT-116 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 128 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCT-116 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel HCT6 2x75 A 2\ subGroups view=Aligns cellType=t3HCT116 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHct116R2x75Il200AlignsRep2V2\ type bam\ wgEncodeRikenCageHelas3CytosolPamMinusSignal HeLa cyto pA- - 1 bigWig 0.140000 15425.269531 HeLa-S3 cytosol polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 128 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 cytosol polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HeLa cyto pA- - 1\ subGroups rep=rep0 rank=rank1 view=MinusRawSignal cellType=t2HELAS3 localization=cytosol rnaExtract=pAM\ track wgEncodeRikenCageHelas3CytosolPamMinusSignal\ type bigWig 0.140000 15425.269531\ wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapPlusRawRep2 HeLa cyto TAP + 2 bigWig 1.000000 4564489.000000 HeLa-S3 TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 128 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HeLa cyto TAP + 2\ subGroups view=PlusSignal cellType=t2HELAS3 localization=CYTOSOL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapPlusRawRep2\ type bigWig 1.000000 4564489.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_ctss_rev Hes3-gfpCardiomyocyticInduction_Day04Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_reverse 0 128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep1.CNhs13656.13331-143C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13331-143C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_tpm_rev Hes3-gfpCardiomyocyticInduction_Day04Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_reverse 1 128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep1.CNhs13656.13331-143C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13331-143C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHpdlfRaw HPdLF Raw bigWig 1.000000 377118.000000 HPdLF DNaseI DGF Raw Signal from ENCODE/UW 0 128 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPdLF DNaseI DGF Raw Signal from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HPdLF Raw\ subGroups view=zRaw cellType=t3HPDLF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHpdlfRaw\ type bigWig 1.000000 377118.000000\ wgEncodeUwAffyExonArrayHvmfSimpleSignalRep1 HVMF 1 broadPeak HVMF Exon array Signal Rep 1 from ENCODE/UW 0 128 0 0 0 127 127 127 0 0 0 expression 1 longLabel HVMF Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HVMF 1\ subGroups cellType=t3HVMF rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayHvmfSimpleSignalRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqK562CytosolPapJunctions K562 cyt pA+ J bed 6 + K562 cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 128 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel K562 cyt pA+ J\ subGroups view=Junctions cellType=t1K562 localization=CYTOSOL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqK562CytosolPapJunctions\ type bed 6 +\ wgEncodeBroadHistoneK562Hdac6a301341aSig K562 HDAC6 bigWig 0.040000 31405.699219 K562 HDAC6 (A301-341A) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 128 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 HDAC6 (A301-341A) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 HDAC6\ subGroups view=Signal factor=HDAC6A301341A cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Hdac6a301341aSig\ type bigWig 0.040000 31405.699219\ wgEncodeHaibMethylRrbsMcf10aesTamStanfordSitesRep2 MCF10A Tam 2 bed 9 + MCF10A Tamoxifen Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 128 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A Tamoxifen Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel MCF10A Tam 2\ subGroups cellType=t3MCF10AERSRC obtainedBy=Stanford treatment=TAM rep=rep2\ track wgEncodeHaibMethylRrbsMcf10aesTamStanfordSitesRep2\ type bed 9 +\ wgEncodeDukeAffyExonMel2183SimpleSignalRep1 Mel_2183 1 bigBed 6 + Mel 2183 Exon array Signal Rep 1 from ENCODE/Duke 0 128 0 0 0 127 127 127 1 0 0 expression 1 longLabel Mel 2183 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Mel_2183 1\ subGroups cellType=t3MEL2183 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonMel2183SimpleSignalRep1\ type bigBed 6 +\ wgEncodeGisRnaPetSknshCellPapClusters SKSH cell pA+ bed 6 + SK-N-SH whole cell polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS 2 128 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH whole cell polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel SKSH cell pA+\ subGroups view=v1Clusters rep=rep1 rank=none cellType=bSKNSH cloned=Free localization=cell rnaExtract=PAP\ track wgEncodeGisRnaPetSknshCellPapClusters\ type bed 6 +\ pgNA18517indel YRI NA18517 indel pgSnp YRI NA18517 indel (Complete Genomics) 0 128 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA18517 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA18517 indel\ subGroups view=C_CG id=CK_div_GS18517 type=Indel\ track pgNA18517indel\ wgEncodeUwHistoneAg04449H3k4me3StdPkRep1 AG49 H3K4M3 Pk 1 narrowPeak AG04449 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 129 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04449 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel AG49 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3AG04449 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg04449H3k4me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseHs27aRawRep1 Bon MarHS27a Sg 1 bigWig 1.000000 51192.000000 Bone Marrow HS27a DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 129 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Bone Marrow HS27a DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Bon MarHS27a Sg 1\ subGroups view=zRSig cellType=t3BONEMARROWHS27A treatment=None rep=rep1\ track wgEncodeUwDnaseHs27aRawRep1\ type bigWig 1.000000 51192.000000\ wgEncodeOpenChromDnaseGlioblaBaseOverlapSignal Gliobla OS bigWig 0.000000 228.000000 Gliobla DNaseI HS Overlap Signal from ENCODE/Duke 2 129 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Gliobla DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Gliobla OS\ subGroups view=SIGBO cellType=t3GLIOBLA treatment=zNONE\ track wgEncodeOpenChromDnaseGlioblaBaseOverlapSignal\ type bigWig 0.000000 228.000000\ wgEncodeUwRepliSeqGm12801WaveSignalRep1 GM12801 Ws 1 bigWig -7.980212 81.235001 GM12801 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW 2 129 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12801 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewWaveSignal off\ shortLabel GM12801 Ws 1\ subGroups view=v4WaveSignal cellType=t3GM12801 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm12801WaveSignalRep1\ type bigWig -7.980212 81.235001\ encTfChipPkENCFF229YSW GM12878 IKZF1 3 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF229YSW) 1 129 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF229YSW)\ parent encTfChipPk off\ shortLabel GM12878 IKZF1 3\ subGroups cellType=GM12878 factor=IKZF1\ track encTfChipPkENCFF229YSW\ wgEncodeOpenChromChipGm12892CtcfSig GM12892 CTCF DS bigWig 0.000000 13.367100 GM12892 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 129 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM12892 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel GM12892 CTCF DS\ subGroups treatment=AANONE view=SIG factor=CTCF cellType=t3GM12892\ track wgEncodeOpenChromChipGm12892CtcfSig\ type bigWig 0.000000 13.367100\ wgEncodeUwTfbsGm12864CtcfStdRawRep1 GM64 CTCF Sg 1 bigWig 1.000000 4037.000000 GM12864 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 129 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12864 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM64 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3GM12864 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12864CtcfStdRawRep1\ type bigWig 1.000000 4037.000000\ wgEncodeHaibTfbsGm12878Pu1Pcr1xPkRep3 GM78 PU.1 PCR1 3 broadPeak GM12878 PU.1 PCR1x ChIP-seq Peaks Rep 3 from ENCODE/HAIB 3 129 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 PU.1 PCR1x ChIP-seq Peaks Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 PU.1 PCR1 3\ subGroups view=Peaks factor=PU1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep3\ track wgEncodeHaibTfbsGm12878Pu1Pcr1xPkRep3\ type broadPeak\ wgEncodeAwgTfbsHaibH1hescNrsfV0416102UniPk H1-hESC REST narrowPeak H1-hESC TFBS Uniform Peaks of NRSF from ENCODE/HudsonAlpha/Analysis 1 129 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of NRSF from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC REST\ subGroups tier=a10 cellType=a10H1HESC factor=REST lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescNrsfV0416102UniPk\ wgEncodeSydhTfbsH1hescMafkIggrabPk H1ES MafK IgR narrowPeak H1-hESC MafK IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 129 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC MafK IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES MafK IgR\ subGroups view=Peaks factor=MAFK cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescMafkIggrabPk\ type narrowPeak\ wgEncodeCaltechRnaSeqHct116R2x75Th1014Il200SigRep1V4 HCT6 2x75 Sg 1 bigWig 0.019300 298424.656250 HCT-116 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech 2 129 0 0 0 127 127 127 0 0 0 expression 0 longLabel HCT-116 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel HCT6 2x75 Sg 1\ subGroups view=Signal cellType=t3HCT116 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHct116R2x75Th1014Il200SigRep1V4\ type bigWig 0.019300 298424.656250\ wgEncodeRikenCageHelas3CytosolPamAln HeLa cyto pA- A 1 bam HeLa-S3 cytosol polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN 0 129 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 cytosol polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HeLa cyto pA- A 1\ subGroups rep=rep0 rank=rank1 view=Alignments cellType=t2HELAS3 localization=cytosol rnaExtract=pAM\ track wgEncodeRikenCageHelas3CytosolPamAln\ type bam\ wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapContigs HeLa nucl TAP C bed 6 HeLa-S3 TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL 2 129 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HeLa nucl TAP C\ subGroups view=Contigs cellType=t2HELAS3 localization=NUCLEUS protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapContigs\ type bed 6\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day04Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_forward 0 129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep2.CNhs13716.13343-143D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13343-143D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day04Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_forward 1 129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep2.CNhs13716.13343-143D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13343-143D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHpfHotspots HPF Hot broadPeak HPF DNaseI DGF Hotspots from ENCODE/UW 0 129 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPF DNaseI DGF Hotspots from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HPF Hot\ subGroups view=Hotspots cellType=t3HPF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHpfHotspots\ type broadPeak\ wgEncodeUwAffyExonArrayHvmfSimpleSignalRep2 HVMF 2 broadPeak HVMF Exon array Signal Rep 2 from ENCODE/UW 0 129 0 0 0 127 127 127 0 0 0 expression 1 longLabel HVMF Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel HVMF 2\ subGroups cellType=t3HVMF rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayHvmfSimpleSignalRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqK562CytosolPapMinusRawSigRep1 K562 cyt pA+ - 1 bigWig 1.000000 678760.000000 K562 cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 129 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel K562 cyt pA+ - 1\ subGroups view=MinusSignal cellType=t1K562 localization=CYTOSOL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562CytosolPapMinusRawSigRep1\ type bigWig 1.000000 678760.000000\ wgEncodeBroadHistoneK562Lsd1Pk K562 LSD1 broadPeak K562 LSD1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 129 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 LSD1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 LSD1\ subGroups view=Peaks factor=LSD1 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Lsd1Pk\ type broadPeak\ wgEncodeHaibMethylRrbsMcf10aesStanfordSitesRep2 MCF10A 2 bed 9 + MCF10A Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 129 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel MCF10A 2\ subGroups cellType=t3MCF10AERSRC obtainedBy=Stanford treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsMcf10aesStanfordSitesRep2\ type bed 9 +\ wgEncodeDukeAffyExonMel2183SimpleSignalRep2 Mel_2183 2 bigBed 6 + Mel 2183 Exon array Signal Rep 2 from ENCODE/Duke 0 129 0 0 0 127 127 127 1 0 0 expression 1 longLabel Mel 2183 Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Mel_2183 2\ subGroups cellType=t3MEL2183 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonMel2183SimpleSignalRep2\ type bigBed 6 +\ wgEncodeGisRnaPetSknshCellPapMinusRawRep3 SKSH cell pA+ - 3 bigWig 1.000000 1301860.000000 SK-N-SH whole cell polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS 2 129 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH whole cell polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel SKSH cell pA+ - 3\ subGroups view=v2MinusRawSignal cellType=bSKNSH cloned=Free localization=cell rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetSknshCellPapMinusRawRep3\ type bigWig 1.000000 1301860.000000\ pgNA19129 YRI NA19129 pgSnp YRI NA19129 (Complete Genomics) 0 129 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA19129 (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA19129\ subGroups view=C_CG id=CK_div_GS19129 type=SNP\ track pgNA19129\ wgEncodeUwHistoneAg04449H3k4me3StdRawRep1 AG49 H3K4M3 Sg 1 bigWig 1.000000 4247.000000 AG04449 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 130 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04449 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG49 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3AG04449 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg04449H3k4me3StdRawRep1\ type bigWig 1.000000 4247.000000\ wgEncodeUwDnaseHs5HotspotsRep1 Bon MarHS5 Ht 1 broadPeak Bone Marrow HS5 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 130 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Bone Marrow HS5 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel Bon MarHS5 Ht 1\ subGroups view=Hot cellType=t3BONEMARROWHS5 treatment=None rep=rep1\ track wgEncodeUwDnaseHs5HotspotsRep1\ type broadPeak\ wgEncodeOpenChromDnaseGm10248Pk GM10248 Pk narrowPeak GM10248 DNaseI HS Peaks from ENCODE/Duke 3 130 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM10248 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel GM10248 Pk\ subGroups view=Peaks cellType=t3GM10248 treatment=zNONE\ track wgEncodeOpenChromDnaseGm10248Pk\ type narrowPeak\ wgEncodeUwRepliSeqGm12801SumSignalRep1 GM12801 Sd 1 bigWig 1.000000 3476.000000 GM12801 Repli-seq Summed Densities Rep 1 from ENCODE/UW 0 130 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12801 Repli-seq Summed Densities Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewSumSignal off\ shortLabel GM12801 Sd 1\ subGroups view=v5SumSignal cellType=t3GM12801 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm12801SumSignalRep1\ type bigWig 1.000000 3476.000000\ encTfChipPkENCFF339FFC GM12878 IKZF2 1 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF2 in GM12878 from ENCODE 3 (ENCFF339FFC) 1 130 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of IKZF2 in GM12878 from ENCODE 3 (ENCFF339FFC)\ parent encTfChipPk off\ shortLabel GM12878 IKZF2 1\ subGroups cellType=GM12878 factor=IKZF2\ track encTfChipPkENCFF339FFC\ wgEncodeOpenChromChipGm12892CtcfBaseOverlapSignal GM12892 CTCF OS bigWig 0.000000 3515.000000 GM12892 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 130 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM12892 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel GM12892 CTCF OS\ subGroups treatment=AANONE view=SIGBO factor=CTCF cellType=t3GM12892\ track wgEncodeOpenChromChipGm12892CtcfBaseOverlapSignal\ type bigWig 0.000000 3515.000000\ wgEncodeUwTfbsGm12864CtcfStdHotspotsRep2 GM64 CTCF Ht 2 broadPeak GM12864 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 130 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12864 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM64 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3GM12864 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12864CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsGm12878Pu1Pcr1xRawRep3 GM78 PU.1 PCR1 3 bigWig 0.216928 193.173996 GM12878 PU.1 PCR1x ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB 2 130 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 PU.1 PCR1x ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 PU.1 PCR1 3\ subGroups view=RawSignal factor=PU1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep3\ track wgEncodeHaibTfbsGm12878Pu1Pcr1xRawRep3\ type bigWig 0.216928 193.173996\ wgEncodeAwgTfbsSydhH1hescRfx5200401194IggrabUniPk H1-hESC RFX5 narrowPeak H1-hESC TFBS Uniform Peaks of RFX5_(200-401-194) from ENCODE/Stanford/Analysis 1 130 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of RFX5_(200-401-194) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC RFX5\ subGroups tier=a10 cellType=a10H1HESC factor=RFX5 lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescRfx5200401194IggrabUniPk\ wgEncodeSydhTfbsH1hescMafkIggrabSig H1ES MafK IgR bigWig 1.000000 16631.000000 H1-hESC MafK IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 130 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC MafK IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES MafK IgR\ subGroups view=Signal factor=MAFK cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescMafkIggrabSig\ type bigWig 1.000000 16631.000000\ wgEncodeCaltechRnaSeqHct116R2x75Th1014Il200SigRep2V4 HCT6 2x75 Sg 2 bigWig 0.019200 324592.250000 HCT-116 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech 2 130 0 0 0 127 127 127 0 0 0 expression 0 longLabel HCT-116 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel HCT6 2x75 Sg 2\ subGroups view=Signal cellType=t3HCT116 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHct116R2x75Th1014Il200SigRep2V4\ type bigWig 0.019200 324592.250000\ wgEncodeRikenCageHelas3CytosolPapTssHmm HeLa cyto pA+ bed 6 HeLa-S3 cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 130 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HeLa cyto pA+\ subGroups view=TssHmm cellType=t2HELAS3 localization=cytosol rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHelas3CytosolPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapMinusRawRep1 HeLa nucl TAP - 1 bigWig 1.000000 9209262.000000 HeLa-S3 TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 130 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HeLa nucl TAP - 1\ subGroups view=MinusSignal cellType=t2HELAS3 localization=NUCLEUS protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapMinusRawRep1\ type bigWig 1.000000 9209262.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_ctss_rev Hes3-gfpCardiomyocyticInduction_Day04Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_reverse 0 130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep2.CNhs13716.13343-143D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13343-143D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_tpm_rev Hes3-gfpCardiomyocyticInduction_Day04Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_reverse 1 130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep2.CNhs13716.13343-143D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13343-143D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHpfPk HPF Pk narrowPeak HPF DNaseI DGF Peaks from ENCODE/UW 0 130 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPF DNaseI DGF Peaks from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HPF Pk\ subGroups view=Peaks cellType=t3HPF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHpfPk\ type narrowPeak\ wgEncodeUwAffyExonArrayJurkatSimpleSignalRep1 Jurkat 1 broadPeak Jurkat Exon array Signal Rep 1 from ENCODE/UW 0 130 0 0 0 127 127 127 0 0 0 expression 1 longLabel Jurkat Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel Jurkat 1\ subGroups cellType=t3JURKAT rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayJurkatSimpleSignalRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqK562CytosolPapMinusRawSigRep2 K562 cyt pA+ - 2 bigWig 1.000000 530019.000000 K562 cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 130 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel K562 cyt pA+ - 2\ subGroups view=MinusSignal cellType=t1K562 localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562CytosolPapMinusRawSigRep2\ type bigWig 1.000000 530019.000000\ wgEncodeBroadHistoneK562Lsd1Sig K562 LSD1 bigWig 0.040000 373.760010 K562 LSD1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 130 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 LSD1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 LSD1\ subGroups view=Signal factor=LSD1 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Lsd1Sig\ type bigWig 0.040000 373.760010\ wgEncodeHaibMethylRrbsMcf7RandshrnaDukeSitesRep1 MCF-7 Cont 1 bed 9 + MCF-7 shRNA Control Methyl RRBS Rep 1 from ENCODE/HudsonAlpha 1 130 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 shRNA Control Methyl RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel MCF-7 Cont 1\ subGroups cellType=t3MCF7SHRNA obtainedBy=DUKE treatment=SHRNACONT rep=rep1\ track wgEncodeHaibMethylRrbsMcf7RandshrnaDukeSitesRep1\ type bed 9 +\ wgEncodeDukeAffyExonMelanoSimpleSignalRep1V2 Melano 1 bigBed 6 + Melano Exon array Signal Rep 1 from ENCODE/Duke 0 130 0 0 0 127 127 127 1 0 0 expression 1 longLabel Melano Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Melano 1\ subGroups cellType=t3MELANO treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonMelanoSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeGisRnaPetSknshCellPapMinusRawRep4 SKSH cell pA+ - 4 bigWig 1.000000 1384000.000000 SK-N-SH whole cell polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS 2 130 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH whole cell polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel SKSH cell pA+ - 4\ subGroups view=v2MinusRawSignal cellType=bSKNSH cloned=Free localization=cell rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetSknshCellPapMinusRawRep4\ type bigWig 1.000000 1384000.000000\ pgNA19129indel YRI NA19129 indel pgSnp YRI NA19129 indel (Complete Genomics) 0 130 0 0 0 127 127 127 0 0 0 varRep 1 longLabel YRI NA19129 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel YRI NA19129 indel\ subGroups view=C_CG id=CK_div_GS19129 type=Indel\ track pgNA19129indel\ wgEncodeUwHistoneAg04449H3k4me3StdHotspotsRep2 AG49 H3K4M3 Ht 2 broadPeak AG04449 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 131 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04449 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel AG49 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3AG04449 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAg04449H3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseHs5PkRep1 Bon MarHS5 Pk 1 narrowPeak Bone Marrow HS5 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 131 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Bone Marrow HS5 DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Bon MarHS5 Pk 1\ subGroups view=Peaks cellType=t3BONEMARROWHS5 treatment=None rep=rep1\ track wgEncodeUwDnaseHs5PkRep1\ type narrowPeak\ pgNA12877 CEU NA12877 pgSnp CEU pedigree 1463, NA12877 (Complete Genomics) 0 131 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU pedigree 1463, NA12877 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12877\ subGroups view=C_CG id=CPed_GS12877 type=SNP\ track pgNA12877\ wgEncodeOpenChromDnaseGm10248Sig GM10248 DS bigWig 0.000000 1.117400 GM10248 DNaseI HS Density Signal from ENCODE/Duke 2 131 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM10248 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel GM10248 DS\ subGroups view=SIG cellType=t3GM10248 treatment=zNONE\ track wgEncodeOpenChromDnaseGm10248Sig\ type bigWig 0.000000 1.117400\ wgEncodeUwRepliSeqGm12812G1bPctSignalRep1 GM12812 G1b 1 bigWig 1.000000 100.000000 GM12812 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 131 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12812 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12812 G1b 1\ subGroups view=v1PctSignal cellType=t3GM12812 phase=p1G1B rep=rep1\ track wgEncodeUwRepliSeqGm12812G1bPctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF653MIQ GM12878 IKZF2 2 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF2 in GM12878 from ENCODE 3 (ENCFF653MIQ) 1 131 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of IKZF2 in GM12878 from ENCODE 3 (ENCFF653MIQ)\ parent encTfChipPk off\ shortLabel GM12878 IKZF2 2\ subGroups cellType=GM12878 factor=IKZF2\ track encTfChipPkENCFF653MIQ\ wgEncodeOpenChromChipGm13976CtcfPkRep1 GM13976 CTCF Pk narrowPeak GM13976 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 131 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM13976 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel GM13976 CTCF Pk\ subGroups view=Peaks factor=CTCF cellType=t3GM13976 treatment=AANONE\ track wgEncodeOpenChromChipGm13976CtcfPkRep1\ type narrowPeak\ wgEncodeUwTfbsGm12864CtcfStdPkRep2 GM64 CTCF Pk 2 narrowPeak GM12864 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 131 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12864 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM64 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3GM12864 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12864CtcfStdPkRep2\ type narrowPeak\ wgEncodeHaibTfbsGm12878Rad21V0416101PkRep1 GM78 RAD21 V101 1 broadPeak GM12878 RAD21 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 131 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 RAD21 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 RAD21 V101 1\ subGroups view=Peaks factor=RAD21 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Rad21V0416101PkRep1\ type broadPeak\ wgEncodeAwgTfbsHaibH1hescRxraV0416102UniPk H1-hESC RXRA narrowPeak H1-hESC TFBS Uniform Peaks of RXRA from ENCODE/HudsonAlpha/Analysis 1 131 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of RXRA from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC RXRA\ subGroups tier=a10 cellType=a10H1HESC factor=RXRA lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescRxraV0416102UniPk\ wgEncodeSydhTfbsH1hescMaxUcdPk H1ES Max UCD narrowPeak H1-hESC Max UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 131 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Max UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES Max UCD\ subGroups view=Peaks factor=MAX cellType=t1H1HESC control=UCD treatment=aNONE\ track wgEncodeSydhTfbsH1hescMaxUcdPk\ type narrowPeak\ wgEncodeCaltechRnaSeqHct116R2x75Il200SplicesRep1V2 HCT6 2x75 Sp 1 bam HCT-116 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 131 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCT-116 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel HCT6 2x75 Sp 1\ subGroups view=Splices cellType=t3HCT116 insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHct116R2x75Il200SplicesRep1V2\ type bam\ wgEncodeRikenCageHelas3CytosolPapPlusSignalRep1 HeLa cyto pA+ + 1 bigWig 0.050000 9534.669922 HeLa-S3 cytosol polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 131 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HeLa cyto pA+ + 1\ subGroups view=PlusRawSignal cellType=t2HELAS3 localization=cytosol rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHelas3CytosolPapPlusSignalRep1\ type bigWig 0.050000 9534.669922\ wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapMinusRawRep2 HeLa nucl TAP - 2 bigWig 1.000000 7836018.000000 HeLa-S3 TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 131 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HeLa nucl TAP - 2\ subGroups view=MinusSignal cellType=t2HELAS3 localization=NUCLEUS protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapMinusRawRep2\ type bigWig 1.000000 7836018.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day04Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_forward 0 131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep3.CNhs13728.13355-143E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13355-143E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day04Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_forward 1 131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep3.CNhs13728.13355-143E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13355-143E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHpfSig HPF Sig bigWig 1.000000 64718.000000 HPF DNaseI DGF Per-base Signal from ENCODE/UW 2 131 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPF DNaseI DGF Per-base Signal from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewSignal off\ shortLabel HPF Sig\ subGroups view=Signal cellType=t3HPF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHpfSig\ type bigWig 1.000000 64718.000000\ wgEncodeUwAffyExonArrayJurkatSimpleSignalRep2 Jurkat 2 broadPeak Jurkat Exon array Signal Rep 2 from ENCODE/UW 0 131 0 0 0 127 127 127 0 0 0 expression 1 longLabel Jurkat Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel Jurkat 2\ subGroups cellType=t3JURKAT rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayJurkatSimpleSignalRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqK562CytosolPapPlusRawSigRep1 K562 cyt pA+ + 1 bigWig 1.000000 1187454.000000 K562 cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 131 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel K562 cyt pA+ + 1\ subGroups view=PlusSignal cellType=t1K562 localization=CYTOSOL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562CytosolPapPlusRawSigRep1\ type bigWig 1.000000 1187454.000000\ wgEncodeBroadHistoneK562NcorPk K562 NCoR broadPeak K562 NCoR Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 131 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 NCoR Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 NCoR\ subGroups view=Peaks factor=NCOR cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562NcorPk\ type broadPeak\ wgEncodeHaibMethylRrbsMcf7CtcfshrnaDukeSitesRep1 MCF-7 CTCF 1 bed 9 + MCF-7 shRNA CTCF knockdown Methyl RRBS Rep 1 from ENCODE/HudsonAlpha 1 131 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 shRNA CTCF knockdown Methyl RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel MCF-7 CTCF 1\ subGroups cellType=t3MCF7SHRNA obtainedBy=DUKE treatment=SHRNACTCF rep=rep1\ track wgEncodeHaibMethylRrbsMcf7CtcfshrnaDukeSitesRep1\ type bed 9 +\ wgEncodeDukeAffyExonMelanoSimpleSignalRep2V2 Melano 2 bigBed 6 + Melano Exon array Signal Rep 2 from ENCODE/Duke 0 131 0 0 0 127 127 127 1 0 0 expression 1 longLabel Melano Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Melano 2\ subGroups cellType=t3MELANO treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonMelanoSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeGisRnaPetSknshCellPapPlusRawRep3 SKSH cell pA+ + 3 bigWig 1.000000 1124560.000000 SK-N-SH whole cell polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS 2 131 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH whole cell polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel SKSH cell pA+ + 3\ subGroups view=v2PlusRawSignal cellType=bSKNSH cloned=Free localization=cell rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetSknshCellPapPlusRawRep3\ type bigWig 1.000000 1124560.000000\ wgEncodeUwHistoneAg04449H3k4me3StdPkRep2 AG49 H3K4M3 Pk 2 narrowPeak AG04449 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 132 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04449 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel AG49 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3AG04449 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAg04449H3k4me3StdPkRep2\ type narrowPeak\ wgEncodeUwDnaseHs5RawRep1 Bon MarHS5 Sg 1 bigWig 1.000000 44822.000000 Bone Marrow HS5 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 132 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Bone Marrow HS5 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Bon MarHS5 Sg 1\ subGroups view=zRSig cellType=t3BONEMARROWHS5 treatment=None rep=rep1\ track wgEncodeUwDnaseHs5RawRep1\ type bigWig 1.000000 44822.000000\ pgNA12877indel CEU NA12877 indel pgSnp CEU NA12877 indel (Complete Genomics) 0 132 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12877 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12877 indel\ subGroups view=C_CG id=CPed_GS12877 type=Indel\ track pgNA12877indel\ wgEncodeOpenChromDnaseGm10248BaseOverlapSignal GM10248 OS bigWig 0.000000 220.000000 GM10248 DNaseI HS Overlap Signal from ENCODE/Duke 2 132 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM10248 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel GM10248 OS\ subGroups view=SIGBO cellType=t3GM10248 treatment=zNONE\ track wgEncodeOpenChromDnaseGm10248BaseOverlapSignal\ type bigWig 0.000000 220.000000\ wgEncodeUwRepliSeqGm12812S1PctSignalRep1 GM12812 S1 1 bigWig 1.000000 100.000000 GM12812 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 132 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12812 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12812 S1 1\ subGroups view=v1PctSignal cellType=t3GM12812 phase=p2S1 rep=rep1\ track wgEncodeUwRepliSeqGm12812S1PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF341HWZ GM12878 IRF3 1 narrowPeak Transcription Factor ChIP-seq Peaks of IRF3 in GM12878 from ENCODE 3 (ENCFF341HWZ) 1 132 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of IRF3 in GM12878 from ENCODE 3 (ENCFF341HWZ)\ parent encTfChipPk off\ shortLabel GM12878 IRF3 1\ subGroups cellType=GM12878 factor=IRF3\ track encTfChipPkENCFF341HWZ\ wgEncodeOpenChromChipGm13976CtcfSigRep1 GM13976 CTCF DS bigWig 0.000000 6.173500 GM13976 CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 132 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM13976 CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel GM13976 CTCF DS\ subGroups view=SIG factor=CTCF cellType=t3GM13976 treatment=AANONE\ track wgEncodeOpenChromChipGm13976CtcfSigRep1\ type bigWig 0.000000 6.173500\ wgEncodeUwTfbsGm12864CtcfStdRawRep2 GM64 CTCF Sg 2 bigWig 1.000000 6440.000000 GM12864 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 132 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12864 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM64 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3GM12864 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12864CtcfStdRawRep2\ type bigWig 1.000000 6440.000000\ wgEncodeHaibTfbsGm12878Rad21V0416101RawRep1 GM78 RAD21 V101 1 bigWig 0.344315 157.352005 GM12878 RAD21 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 132 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 RAD21 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RAD21 V101 1\ subGroups view=RawSignal factor=RAD21 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Rad21V0416101RawRep1\ type bigWig 0.344315 157.352005\ wgEncodeAwgTfbsSydhH1hescSin3anb6001263IggrabUniPk H1-hESC SIN3A narrowPeak H1-hESC TFBS Uniform Peaks of SIN3A_(NB600-1263) from ENCODE/Stanford/Analysis 1 132 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of SIN3A_(NB600-1263) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC SIN3A\ subGroups tier=a10 cellType=a10H1HESC factor=SIN3A lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescSin3anb6001263IggrabUniPk\ wgEncodeSydhTfbsH1hescMaxUcdSig H1ES Max UCD bigWig 0.000000 4869.100098 H1-hESC Max UC Davis ChIP-seq Signal from ENCODE/SYDH 2 132 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Max UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES Max UCD\ subGroups view=Signal factor=MAX cellType=t1H1HESC control=UCD treatment=aNONE\ track wgEncodeSydhTfbsH1hescMaxUcdSig\ type bigWig 0.000000 4869.100098\ wgEncodeCaltechRnaSeqHct116R2x75Il200SplicesRep2V2 HCT6 2x75 Sp 2 bam HCT-116 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 132 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCT-116 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel HCT6 2x75 Sp 2\ subGroups view=Splices cellType=t3HCT116 insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHct116R2x75Il200SplicesRep2V2\ type bam\ wgEncodeRikenCageHelas3CytosolPapPlusSignalRep2 HeLa cyto pA+ + 2 bigWig 0.050000 10951.839844 HeLa-S3 cytosol polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 132 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HeLa cyto pA+ + 2\ subGroups view=PlusRawSignal cellType=t2HELAS3 localization=cytosol rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHelas3CytosolPapPlusSignalRep2\ type bigWig 0.050000 10951.839844\ wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapPlusRawRep1 HeLa nucl TAP + 1 bigWig 1.000000 290391.000000 HeLa-S3 TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 132 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HeLa nucl TAP + 1\ subGroups view=PlusSignal cellType=t2HELAS3 localization=NUCLEUS protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapPlusRawRep1\ type bigWig 1.000000 290391.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_ctss_rev Hes3-gfpCardiomyocyticInduction_Day04Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_reverse 0 132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep3.CNhs13728.13355-143E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13355-143E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_tpm_rev Hes3-gfpCardiomyocyticInduction_Day04Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_reverse 1 132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep3.CNhs13728.13355-143E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13355-143E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHpfRaw HPF Raw bigWig 1.000000 212413.000000 HPF DNaseI DGF Raw Signal from ENCODE/UW 0 132 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPF DNaseI DGF Raw Signal from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HPF Raw\ subGroups view=zRaw cellType=t3HPF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHpfRaw\ type bigWig 1.000000 212413.000000\ wgEncodeCshlLongRnaSeqK562CytosolPapPlusRawSigRep2 K562 cyt pA+ + 2 bigWig 1.000000 635425.000000 K562 cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 132 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel K562 cyt pA+ + 2\ subGroups view=PlusSignal cellType=t1K562 localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562CytosolPapPlusRawSigRep2\ type bigWig 1.000000 635425.000000\ wgEncodeBroadHistoneK562NcorSig K562 NCoR bigWig 0.040000 390.359985 K562 NCoR Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 132 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 NCoR Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 NCoR\ subGroups view=Signal factor=NCOR cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562NcorSig\ type bigWig 0.040000 390.359985\ wgEncodeUwAffyExonArrayLncapSimpleSignalRep1 LNCaP 1 broadPeak LNCaP Exon array Signal Rep 1 from ENCODE/UW 0 132 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel LNCaP Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel LNCaP 1\ subGroups cellType=t3LNCAP rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayLncapSimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethylRrbsMcf7RandshrnaDukeSitesRep2 MCF-7 Cont 2 bed 9 + MCF-7 shRNA Control Methyl RRBS Rep 2 from ENCODE/HudsonAlpha 1 132 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 shRNA Control Methyl RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel MCF-7 Cont 2\ subGroups cellType=t3MCF7SHRNA obtainedBy=DUKE treatment=SHRNACONT rep=rep2\ track wgEncodeHaibMethylRrbsMcf7RandshrnaDukeSitesRep2\ type bed 9 +\ wgEncodeDukeAffyExonMelanoSimpleSignalRep3V2 Melano 3 bigBed 6 + Melano Exon array Signal Rep 3 from ENCODE/Duke 0 132 0 0 0 127 127 127 1 0 0 expression 1 longLabel Melano Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Melano 3\ subGroups cellType=t3MELANO treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonMelanoSimpleSignalRep3V2\ type bigBed 6 +\ wgEncodeGisRnaPetSknshCellPapPlusRawRep4 SKSH cell pA+ + 4 bigWig 1.000000 1096210.000000 SK-N-SH whole cell polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS 2 132 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH whole cell polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel SKSH cell pA+ + 4\ subGroups view=v2PlusRawSignal cellType=bSKNSH cloned=Free localization=cell rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetSknshCellPapPlusRawRep4\ type bigWig 1.000000 1096210.000000\ wgEncodeUwHistoneAg04449H3k4me3StdRawRep2 AG49 H3K4M3 Sg 2 bigWig 1.000000 5567.000000 AG04449 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 133 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04449 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG49 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3AG04449 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAg04449H3k4me3StdRawRep2\ type bigWig 1.000000 5567.000000\ wgEncodeUwDnaseMscHotspotsRep1 Bon MarMSC Ht 1 broadPeak Bone Marrow MSC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 133 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Bone Marrow MSC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel Bon MarMSC Ht 1\ subGroups view=Hot cellType=t3BONEMARROWMSC treatment=None rep=rep1\ track wgEncodeUwDnaseMscHotspotsRep1\ type broadPeak\ pgNA12879 CEU NA12879 pgSnp CEU pedigree 1463, NA12879 (Complete Genomics) 0 133 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU pedigree 1463, NA12879 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12879\ subGroups view=C_CG id=CPed_GS12879 type=SNP\ track pgNA12879\ wgEncodeOpenChromDnaseGm10266Pk GM10266 Pk narrowPeak GM10266 DNaseI HS Peaks from ENCODE/Duke 3 133 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM10266 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel GM10266 Pk\ subGroups view=Peaks cellType=t3GM10266 treatment=zNONE\ track wgEncodeOpenChromDnaseGm10266Pk\ type narrowPeak\ wgEncodeUwRepliSeqGm12812S2PctSignalRep1 GM12812 S2 1 bigWig 1.000000 100.000000 GM12812 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 133 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12812 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12812 S2 1\ subGroups view=v1PctSignal cellType=t3GM12812 phase=p3S2 rep=rep1\ track wgEncodeUwRepliSeqGm12812S2PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF303TVZ GM12878 IRF3 2 narrowPeak Transcription Factor ChIP-seq Peaks of IRF3 in GM12878 from ENCODE 3 (ENCFF303TVZ) 1 133 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of IRF3 in GM12878 from ENCODE 3 (ENCFF303TVZ)\ parent encTfChipPk off\ shortLabel GM12878 IRF3 2\ subGroups cellType=GM12878 factor=IRF3\ track encTfChipPkENCFF303TVZ\ wgEncodeOpenChromChipGm13976CtcfBaseOverlapSignalRep1 GM13976 CTCF OS bigWig 0.000000 1002.000000 GM13976 CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 133 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM13976 CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel GM13976 CTCF OS\ subGroups view=SIGBO factor=CTCF cellType=t3GM13976 treatment=AANONE\ track wgEncodeOpenChromChipGm13976CtcfBaseOverlapSignalRep1\ type bigWig 0.000000 1002.000000\ wgEncodeUwTfbsGm12864CtcfStdHotspotsRep3 GM64 CTCF Ht 3 broadPeak GM12864 CTCF TFBS ChIP-seq Hotspots 3 from ENCODE/UW 2 133 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12864 CTCF TFBS ChIP-seq Hotspots 3 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM64 CTCF Ht 3\ subGroups view=Hot factor=CTCF cellType=t3GM12864 rep=rep3 treatment=aNone\ track wgEncodeUwTfbsGm12864CtcfStdHotspotsRep3\ type broadPeak\ wgEncodeHaibTfbsGm12878Rad21V0416101PkRep2 GM78 RAD21 V101 2 broadPeak GM12878 RAD21 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 133 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 RAD21 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 RAD21 V101 2\ subGroups view=Peaks factor=RAD21 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Rad21V0416101PkRep2\ type broadPeak\ wgEncodeAwgTfbsHaibH1hescSin3ak20Pcr1xUniPk H1-hESC SIN3AK20 narrowPeak H1-hESC TFBS Uniform Peaks of Sin3Ak-20 from ENCODE/HudsonAlpha/Analysis 1 133 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of Sin3Ak-20 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC SIN3AK20\ subGroups tier=a10 cellType=a10H1HESC factor=SIN3AK20 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescSin3ak20Pcr1xUniPk\ wgEncodeSydhTfbsH1hescMxi1IggrabPk H1ES Mxi1 IgR narrowPeak H1-hESC Mxi1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 133 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Mxi1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES Mxi1 IgR\ subGroups view=Peaks factor=MXI1 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescMxi1IggrabPk\ type narrowPeak\ wgEncodeRikenCageHelas3CytosolPapMinusSignalRep1 HeLa cyto pA+ - 1 bigWig 0.050000 11692.589844 HeLa-S3 cytosol polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 133 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HeLa cyto pA+ - 1\ subGroups view=MinusRawSignal cellType=t2HELAS3 localization=cytosol rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHelas3CytosolPapMinusSignalRep1\ type bigWig 0.050000 11692.589844\ wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapPlusRawRep2 HeLa nucl TAP + 2 bigWig 1.000000 1345811.000000 HeLa-S3 TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 133 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HeLa nucl TAP + 2\ subGroups view=PlusSignal cellType=t2HELAS3 localization=NUCLEUS protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapPlusRawRep2\ type bigWig 1.000000 1345811.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day05Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_forward 0 133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep1.CNhs13657.13332-143C2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13332-143C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day05Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_forward 1 133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep1.CNhs13657.13332-143C2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13332-143C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHrceHotspots HRCEpiC Hot broadPeak HRCEpiC DNaseI DGF Hotspots from ENCODE/UW 0 133 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRCEpiC DNaseI DGF Hotspots from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HRCEpiC Hot\ subGroups view=Hotspots cellType=t3HRCEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHrceHotspots\ type broadPeak\ wgEncodeCaltechRnaSeqHsmmR2x75Il200AlignsRep1V2 HSMM 2x75 A 1 bam HSMM 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 133 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSMM 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel HSMM 2x75 A 1\ subGroups view=Aligns cellType=t3HSMM insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHsmmR2x75Il200AlignsRep1V2\ type bam\ wgEncodeCshlLongRnaSeqK562NucleolusTotalAlnRep4 K562 nlus tot A 2 bam K562 nucleolus total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 133 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleolus total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel K562 nlus tot A 2\ subGroups view=Alignments cellType=t1K562 localization=NUCLEOLUS rnaExtract=TOTAL rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqK562NucleolusTotalAlnRep4\ type bam\ wgEncodeBroadHistoneK562Nsd2ab75359Pk K562 NSD2 broadPeak K562 NSD2 (ab75359) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 133 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 NSD2 (ab75359) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 NSD2\ subGroups view=Peaks factor=NSD2AB75359 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Nsd2ab75359Pk\ type broadPeak\ wgEncodeUwAffyExonArrayLncapSimpleSignalRep2 LNCaP 2 broadPeak LNCaP Exon array Signal Rep 2 from ENCODE/UW 0 133 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel LNCaP Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel LNCaP 2\ subGroups cellType=t3LNCAP rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayLncapSimpleSignalRep2\ type broadPeak\ wgEncodeHaibMethylRrbsMcf7CtcfshrnaDukeSitesRep2 MCF-7 CTCF 2 bed 9 + MCF-7 shRNA CTCF knockdown Methyl RRBS Rep 2 from ENCODE/HudsonAlpha 1 133 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 shRNA CTCF knockdown Methyl RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel MCF-7 CTCF 2\ subGroups cellType=t3MCF7SHRNA obtainedBy=DUKE treatment=SHRNACTCF rep=rep2\ track wgEncodeHaibMethylRrbsMcf7CtcfshrnaDukeSitesRep2\ type bed 9 +\ wgEncodeDukeAffyExonMelanoSimpleSignalRep4V2 Melano 4 bigBed 6 + Melano Exon array Signal Rep 4 from ENCODE/Duke 0 133 0 0 0 127 127 127 1 0 0 expression 1 longLabel Melano Exon array Signal Rep 4 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Melano 4\ subGroups cellType=t3MELANO treatment=zNONE rep=rep4\ track wgEncodeDukeAffyExonMelanoSimpleSignalRep4V2\ type bigBed 6 +\ wgEncodeGisRnaPetSknshCellPapAlnRep3 SKSH cell pA+ A 3 bam SK-N-SH whole cell polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS 0 133 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH whole cell polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel SKSH cell pA+ A 3\ subGroups view=v3Alignments cellType=bSKNSH cloned=Free localization=cell rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetSknshCellPapAlnRep3\ type bam\ wgEncodeUwHistoneAg04449InputStdRawRep1 AG49 In Sg 1 bigWig 1.000000 14656.000000 AG04449 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 134 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04449 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG49 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3AG04449 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg04449InputStdRawRep1\ type bigWig 1.000000 14656.000000\ wgEncodeUwDnaseMscPkRep1 Bon MarMSC Pk 1 narrowPeak Bone Marrow MSC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 134 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Bone Marrow MSC DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Bon MarMSC Pk 1\ subGroups view=Peaks cellType=t3BONEMARROWMSC treatment=None rep=rep1\ track wgEncodeUwDnaseMscPkRep1\ type narrowPeak\ pgNA12879indel CEU NA12879 indel pgSnp CEU NA12879 indel (Complete Genomics) 0 134 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12879 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12879 indel\ subGroups view=C_CG id=CPed_GS12879 type=Indel\ track pgNA12879indel\ wgEncodeOpenChromDnaseGm10266Sig GM10266 DS bigWig 0.000000 1.645000 GM10266 DNaseI HS Density Signal from ENCODE/Duke 2 134 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM10266 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel GM10266 DS\ subGroups view=SIG cellType=t3GM10266 treatment=zNONE\ track wgEncodeOpenChromDnaseGm10266Sig\ type bigWig 0.000000 1.645000\ wgEncodeUwRepliSeqGm12812S3PctSignalRep1 GM12812 S3 1 bigWig 1.000000 100.000000 GM12812 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 134 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12812 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12812 S3 1\ subGroups view=v1PctSignal cellType=t3GM12812 phase=p4S3 rep=rep1\ track wgEncodeUwRepliSeqGm12812S3PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF391DVL GM12878 IRF4 narrowPeak Transcription Factor ChIP-seq Peaks of IRF4 in GM12878 from ENCODE 3 (ENCFF391DVL) 1 134 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of IRF4 in GM12878 from ENCODE 3 (ENCFF391DVL)\ parent encTfChipPk off\ shortLabel GM12878 IRF4\ subGroups cellType=GM12878 factor=IRF4\ track encTfChipPkENCFF391DVL\ wgEncodeOpenChromChipGm13976InputSig GM13976 Input DS bigWig 0.000000 6.426200 GM13976 Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 134 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM13976 Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel GM13976 Input DS\ subGroups view=SIG factor=zCTRL cellType=t3GM13976 treatment=AANONE\ track wgEncodeOpenChromChipGm13976InputSig\ type bigWig 0.000000 6.426200\ wgEncodeUwTfbsGm12864CtcfStdPkRep3 GM64 CTCF Pk 3 narrowPeak GM12864 CTCF TFBS ChIP-seq Peaks 3 from ENCODE/UW 3 134 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12864 CTCF TFBS ChIP-seq Peaks 3 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM64 CTCF Pk 3\ subGroups view=Peaks factor=CTCF cellType=t3GM12864 rep=rep3 treatment=aNone\ track wgEncodeUwTfbsGm12864CtcfStdPkRep3\ type narrowPeak\ wgEncodeHaibTfbsGm12878Rad21V0416101RawRep2 GM78 RAD21 V101 2 bigWig 0.183488 92.707603 GM12878 RAD21 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 134 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 RAD21 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RAD21 V101 2\ subGroups view=RawSignal factor=RAD21 cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Rad21V0416101RawRep2\ type bigWig 0.183488 92.707603\ wgEncodeAwgTfbsHaibH1hescSix5Pcr1xUniPk H1-hESC SIX5 narrowPeak H1-hESC TFBS Uniform Peaks of SIX5 from ENCODE/HudsonAlpha/Analysis 1 134 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of SIX5 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC SIX5\ subGroups tier=a10 cellType=a10H1HESC factor=SIX5 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescSix5Pcr1xUniPk\ wgEncodeSydhTfbsH1hescMxi1IggrabSig H1ES Mxi1 IgR bigWig 1.000000 18473.000000 H1-hESC Mxi1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 134 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Mxi1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES Mxi1 IgR\ subGroups view=Signal factor=MXI1 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescMxi1IggrabSig\ type bigWig 1.000000 18473.000000\ wgEncodeRikenCageHelas3CytosolPapMinusSignalRep2 HeLa cyto pA+ - 2 bigWig 0.050000 13038.450195 HeLa-S3 cytosol polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 134 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HeLa cyto pA+ - 2\ subGroups view=MinusRawSignal cellType=t2HELAS3 localization=cytosol rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHelas3CytosolPapMinusSignalRep2\ type bigWig 0.050000 13038.450195\ wgEncodeCshlShortRnaSeqHepg2CellShorttotalTapContigs HepG cell TAP C bed 6 HepG2 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 134 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HepG cell TAP C\ subGroups view=Contigs cellType=t2HEPG2 localization=CELL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqHepg2CellShorttotalTapContigs\ type bed 6\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_ctss_rev Hes3-gfpCardiomyocyticInduction_Day05Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_reverse 0 134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep1.CNhs13657.13332-143C2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13332-143C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_tpm_rev Hes3-gfpCardiomyocyticInduction_Day05Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_reverse 1 134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep1.CNhs13657.13332-143C2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13332-143C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHrcePk HRCEpiC Pk narrowPeak HRCEpiC DNaseI DGF Peaks from ENCODE/UW 0 134 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRCEpiC DNaseI DGF Peaks from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HRCEpiC Pk\ subGroups view=Peaks cellType=t3HRCEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHrcePk\ type narrowPeak\ wgEncodeCaltechRnaSeqHsmmR2x75Il200AlignsRep2V2 HSMM 2x75 A 2 bam HSMM 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 134 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSMM 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel HSMM 2x75 A 2\ subGroups view=Aligns cellType=t3HSMM insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHsmmR2x75Il200AlignsRep2V2\ type bam\ wgEncodeCshlLongRnaSeqK562NucleolusTotalMinusRawSigRep4 K562 nlus tot - 2 bigWig 1.000000 5373313.000000 K562 nucleolus total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 134 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleolus total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel K562 nlus tot - 2\ subGroups view=MinusSignal cellType=t1K562 localization=NUCLEOLUS rnaExtract=TOTAL rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqK562NucleolusTotalMinusRawSigRep4\ type bigWig 1.000000 5373313.000000\ wgEncodeBroadHistoneK562Nsd2ab75359Sig K562 NSD2 bigWig 0.040000 398.000000 K562 NSD2 (ab75359) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 134 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 NSD2 (ab75359) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 NSD2\ subGroups view=Signal factor=NSD2AB75359 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Nsd2ab75359Sig\ type bigWig 0.040000 398.000000\ wgEncodeHaibMethylRrbsMelanoSitesRep1 Melano 1 bed 9 + Melano Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 134 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Melano Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Melano 1\ subGroups obtainedBy=DUKE cellType=t3MELANO treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsMelanoSitesRep1\ type bed 9 +\ wgEncodeDukeAffyExonMyometrSimpleSignalRep1V2 Myometr 1 bigBed 6 + Myometr Exon array Signal Rep 1 from ENCODE/Duke 0 134 0 0 0 127 127 127 1 0 0 expression 1 longLabel Myometr Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Myometr 1\ subGroups cellType=t3MYOMETR treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonMyometrSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeUwAffyExonArrayNb4SimpleSignalRep1 NB4 1 broadPeak NB4 Exon array Signal Rep 1 from ENCODE/UW 0 134 0 0 0 127 127 127 0 0 0 expression 1 longLabel NB4 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel NB4 1\ subGroups cellType=t3NB4 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayNb4SimpleSignalRep1\ type broadPeak\ wgEncodeGisRnaPetSknshCellPapAlnRep4 SKSH cell pA+ A 4 bam SK-N-SH whole cell polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS 0 134 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH whole cell polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel SKSH cell pA+ A 4\ subGroups view=v3Alignments cellType=bSKNSH cloned=Free localization=cell rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetSknshCellPapAlnRep4\ type bam\ wgEncodeUwHistoneAg04450H3k4me3StdHotspotsRep1 AG50 H3K4M3 Ht 1 broadPeak AG04450 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 135 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel AG50 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3AG04450 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg04450H3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseMscRawRep1 Bon MarMSC Sg 1 bigWig 1.000000 18904.000000 Bone Marrow MSC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 135 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Bone Marrow MSC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Bon MarMSC Sg 1\ subGroups view=zRSig cellType=t3BONEMARROWMSC treatment=None rep=rep1\ track wgEncodeUwDnaseMscRawRep1\ type bigWig 1.000000 18904.000000\ pgNA12880 CEU NA12880 pgSnp CEU pedigree 1463, NA12880 (Complete Genomics) 0 135 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU pedigree 1463, NA12880 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12880\ subGroups view=C_CG id=CPed_GS12880 type=SNP\ track pgNA12880\ wgEncodeOpenChromDnaseGm10266BaseOverlapSignal GM10266 OS bigWig 0.000000 231.000000 GM10266 DNaseI HS Overlap Signal from ENCODE/Duke 2 135 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM10266 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel GM10266 OS\ subGroups view=SIGBO cellType=t3GM10266 treatment=zNONE\ track wgEncodeOpenChromDnaseGm10266BaseOverlapSignal\ type bigWig 0.000000 231.000000\ wgEncodeUwRepliSeqGm12812S4PctSignalRep1 GM12812 S4 1 bigWig 1.000000 100.000000 GM12812 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 135 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12812 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12812 S4 1\ subGroups view=v1PctSignal cellType=t3GM12812 phase=p5S4 rep=rep1\ track wgEncodeUwRepliSeqGm12812S4PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF100ERQ GM12878 IRF5 narrowPeak Transcription Factor ChIP-seq Peaks of IRF5 in GM12878 from ENCODE 3 (ENCFF100ERQ) 1 135 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of IRF5 in GM12878 from ENCODE 3 (ENCFF100ERQ)\ parent encTfChipPk off\ shortLabel GM12878 IRF5\ subGroups cellType=GM12878 factor=IRF5\ track encTfChipPkENCFF100ERQ\ wgEncodeOpenChromChipGm13977CtcfPkRep1 GM13977 CTCF Pk narrowPeak GM13977 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 135 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM13977 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel GM13977 CTCF Pk\ subGroups view=Peaks factor=CTCF cellType=t3GM13977 treatment=AANONE\ track wgEncodeOpenChromChipGm13977CtcfPkRep1\ type narrowPeak\ wgEncodeUwTfbsGm12864CtcfStdRawRep3 GM64 CTCF Sg 3 bigWig 1.000000 7668.000000 GM12864 CTCF TFBS ChIP-seq Raw Signal 3 from ENCODE/UW 2 135 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12864 CTCF TFBS ChIP-seq Raw Signal 3 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM64 CTCF Sg 3\ subGroups view=zRSig factor=CTCF cellType=t3GM12864 rep=rep3 treatment=aNone\ track wgEncodeUwTfbsGm12864CtcfStdRawRep3\ type bigWig 1.000000 7668.000000\ wgEncodeHaibTfbsGm12878Runx3sc101553V0422111PkRep1 GM78 RUNX3 V11 1 broadPeak GM12878 RUNX3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 135 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 RUNX3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 RUNX3 V11 1\ subGroups view=Peaks factor=RUNX3SC101553 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Runx3sc101553V0422111PkRep1\ type broadPeak\ wgEncodeAwgTfbsHaibH1hescSp1Pcr1xUniPk H1-hESC SP1 narrowPeak H1-hESC TFBS Uniform Peaks of SP1 from ENCODE/HudsonAlpha/Analysis 1 135 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of SP1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC SP1\ subGroups tier=a10 cellType=a10H1HESC factor=SP1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescSp1Pcr1xUniPk\ wgEncodeSydhTfbsH1hescNrf1IggrabPk H1ES Nrf1 IgR narrowPeak H1-hESC Nrf1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 135 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Nrf1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES Nrf1 IgR\ subGroups view=Peaks factor=NRF1 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescNrf1IggrabPk\ type narrowPeak\ wgEncodeRikenCageHelas3CytosolPapAlnRep1 HeLa cyto pA+ A 1 bam HeLa-S3 cytosol polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 135 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HeLa cyto pA+ A 1\ subGroups view=Alignments cellType=t2HELAS3 localization=cytosol rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHelas3CytosolPapAlnRep1\ type bam\ wgEncodeCshlShortRnaSeqHepg2CellShorttotalTapMinusRawRep1 HepG cell TAP - 1 bigWig 1.000000 3566535.000000 HepG2 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 135 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HepG cell TAP - 1\ subGroups view=MinusSignal cellType=t2HEPG2 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHepg2CellShorttotalTapMinusRawRep1\ type bigWig 1.000000 3566535.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day05Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_forward 0 135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep2.CNhs13717.13344-143D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13344-143D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day05Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_forward 1 135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep2.CNhs13717.13344-143D5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13344-143D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHrceSig HRCEpiC Sig bigWig 1.000000 20839.000000 HRCEpiC DNaseI DGF Per-base Signal from ENCODE/UW 2 135 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRCEpiC DNaseI DGF Per-base Signal from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewSignal off\ shortLabel HRCEpiC Sig\ subGroups view=Signal cellType=t3HRCEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHrceSig\ type bigWig 1.000000 20839.000000\ wgEncodeCaltechRnaSeqHsmmR2x75Th1014Il200SigRep1V4 HSMM 2x75 Sg 1 bigWig 0.025000 229178.156250 HSMM 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech 2 135 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSMM 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel HSMM 2x75 Sg 1\ subGroups view=Signal cellType=t3HSMM insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHsmmR2x75Th1014Il200SigRep1V4\ type bigWig 0.025000 229178.156250\ wgEncodeCshlLongRnaSeqK562NucleolusTotalPlusRawSigRep4 K562 nlus tot + 2 bigWig 1.000000 3090993.000000 K562 nucleolus total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 135 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleolus total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel K562 nlus tot + 2\ subGroups view=PlusSignal cellType=t1K562 localization=NUCLEOLUS rnaExtract=TOTAL rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqK562NucleolusTotalPlusRawSigRep4\ type bigWig 1.000000 3090993.000000\ wgEncodeBroadHistoneK562P300StdPk K562 P300 broadPeak K562 P300 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 135 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 P300 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 P300\ subGroups view=Peaks factor=P300 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562P300StdPk\ type broadPeak\ wgEncodeHaibMethylRrbsMelanoSitesRep2 Melano 2 bed 9 + Melano Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 135 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Melano Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Melano 2\ subGroups obtainedBy=DUKE cellType=t3MELANO treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsMelanoSitesRep2\ type bed 9 +\ wgEncodeDukeAffyExonMyometrSimpleSignalRep2V2 Myometr 2 bigBed 6 + Myometr Exon array Signal Rep 2 from ENCODE/Duke 0 135 0 0 0 127 127 127 1 0 0 expression 1 longLabel Myometr Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Myometr 2\ subGroups cellType=t3MYOMETR treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonMyometrSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeUwAffyExonArrayNb4SimpleSignalRep2 NB4 2 broadPeak NB4 Exon array Signal Rep 2 from ENCODE/UW 0 135 0 0 0 127 127 127 0 0 0 expression 1 longLabel NB4 Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel NB4 2\ subGroups cellType=t3NB4 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayNb4SimpleSignalRep2\ type broadPeak\ wgEncodeGisRnaPetSknshCytosolPapClusters SKSH cyto pA+ bed 6 + SK-N-SH cytosol polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS 2 135 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH cytosol polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel SKSH cyto pA+\ subGroups view=v1Clusters rep=rep1 rank=none cellType=bSKNSH cloned=Free localization=cytosol rnaExtract=PAP\ track wgEncodeGisRnaPetSknshCytosolPapClusters\ type bed 6 +\ wgEncodeUwHistoneAg04450H3k4me3StdPkRep1 AG50 H3K4M3 Pk 1 narrowPeak AG04450 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 136 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel AG50 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3AG04450 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg04450H3k4me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseMscHotspotsRep2 Bon MarMSC Ht 2 broadPeak Bone Marrow MSC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 136 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Bone Marrow MSC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel Bon MarMSC Ht 2\ subGroups view=Hot cellType=t3BONEMARROWMSC treatment=None rep=rep2\ track wgEncodeUwDnaseMscHotspotsRep2\ type broadPeak\ pgNA12880indel CEU NA12880 indel pgSnp CEU NA12880 indel (Complete Genomics) 0 136 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12880 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12880 indel\ subGroups view=C_CG id=CPed_GS12880 type=Indel\ track pgNA12880indel\ wgEncodeUwRepliSeqGm12812G2PctSignalRep1 GM12812 G2 1 bigWig 1.000000 100.000000 GM12812 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 136 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12812 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12812 G2 1\ subGroups view=v1PctSignal cellType=t3GM12812 phase=p6G2 rep=rep1\ track wgEncodeUwRepliSeqGm12812G2PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF939TZS GM12878 JUNB narrowPeak Transcription Factor ChIP-seq Peaks of JUNB in GM12878 from ENCODE 3 (ENCFF939TZS) 1 136 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of JUNB in GM12878 from ENCODE 3 (ENCFF939TZS)\ parent encTfChipPk off\ shortLabel GM12878 JUNB\ subGroups cellType=GM12878 factor=JUNB\ track encTfChipPkENCFF939TZS\ wgEncodeOpenChromDnaseGm12891Pk GM12891 Pk narrowPeak GM12891 DNaseI HS Peaks from ENCODE/Duke 3 136 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM12891 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel GM12891 Pk\ subGroups view=Peaks cellType=t3GM12891 treatment=zNONE\ track wgEncodeOpenChromDnaseGm12891Pk\ type narrowPeak\ wgEncodeOpenChromChipGm13977CtcfSigRep1 GM13977 CTCF DS bigWig 0.000000 12.803400 GM13977 CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 136 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM13977 CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel GM13977 CTCF DS\ subGroups view=SIG factor=CTCF cellType=t3GM13977 treatment=AANONE\ track wgEncodeOpenChromChipGm13977CtcfSigRep1\ type bigWig 0.000000 12.803400\ wgEncodeUwTfbsGm12864InputStdRawRep1 GM64 In Sg 1 bigWig 1.000000 8541.000000 GM12864 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 136 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12864 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM64 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3GM12864 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12864InputStdRawRep1\ type bigWig 1.000000 8541.000000\ wgEncodeHaibTfbsGm12878Runx3sc101553V0422111RawRep1 GM78 RUNX3 V11 1 bigWig 0.117621 100.154999 GM12878 RUNX3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 136 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 RUNX3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RUNX3 V11 1\ subGroups view=RawSignal factor=RUNX3SC101553 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Runx3sc101553V0422111RawRep1\ type bigWig 0.117621 100.154999\ wgEncodeAwgTfbsHaibH1hescSp2V0422111UniPk H1-hESC SP2 narrowPeak H1-hESC TFBS Uniform Peaks of SP2_(SC-643) from ENCODE/HudsonAlpha/Analysis 1 136 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of SP2_(SC-643) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC SP2\ subGroups tier=a10 cellType=a10H1HESC factor=SP2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescSp2V0422111UniPk\ wgEncodeSydhTfbsH1hescNrf1IggrabSig H1ES Nrf1 IgR bigWig 1.000000 15436.000000 H1-hESC Nrf1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 136 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Nrf1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES Nrf1 IgR\ subGroups view=Signal factor=NRF1 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescNrf1IggrabSig\ type bigWig 1.000000 15436.000000\ wgEncodeRikenCageHelas3CytosolPapAlnRep2 HeLa cyto pA+ A 2 bam HeLa-S3 cytosol polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 136 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HeLa cyto pA+ A 2\ subGroups view=Alignments cellType=t2HELAS3 localization=cytosol rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHelas3CytosolPapAlnRep2\ type bam\ wgEncodeCshlShortRnaSeqHepg2CellShorttotalTapMinusRawRep2 HepG cell TAP - 2 bigWig 1.000000 3191993.000000 HepG2 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 136 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HepG cell TAP - 2\ subGroups view=MinusSignal cellType=t2HEPG2 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHepg2CellShorttotalTapMinusRawRep2\ type bigWig 1.000000 3191993.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_ctss_rev Hes3-gfpCardiomyocyticInduction_Day05Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_reverse 0 136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep2.CNhs13717.13344-143D5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13344-143D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_tpm_rev Hes3-gfpCardiomyocyticInduction_Day05Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_reverse 1 136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep2.CNhs13717.13344-143D5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13344-143D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHrceRaw HRCEpiC Raw bigWig 1.000000 98766.000000 HRCEpiC DNaseI DGF Raw Signal from ENCODE/UW 0 136 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRCEpiC DNaseI DGF Raw Signal from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HRCEpiC Raw\ subGroups view=zRaw cellType=t3HRCEPIC treatment=aNONE rep=rep1\ track wgEncodeUwDgfHrceRaw\ type bigWig 1.000000 98766.000000\ wgEncodeCaltechRnaSeqHsmmR2x75Th1014Il200SigRep2V4 HSMM 2x75 Sg 2 bigWig 0.025000 221794.921875 HSMM 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech 2 136 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSMM 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel HSMM 2x75 Sg 2\ subGroups view=Signal cellType=t3HSMM insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHsmmR2x75Th1014Il200SigRep2V4\ type bigWig 0.025000 221794.921875\ wgEncodeCshlLongRnaSeqK562NucleoplasmTotalAlnRep3 K562 ncpm tot A 1 bam K562 nucleoplasm total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 136 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleoplasm total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel K562 ncpm tot A 1\ subGroups view=Alignments cellType=t1K562 localization=NUCLEOPLASM rnaExtract=TOTAL rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqK562NucleoplasmTotalAlnRep3\ type bam\ wgEncodeBroadHistoneK562P300StdSig K562 P300 bigWig 0.040000 96892.500000 K562 P300 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 136 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 P300 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 P300\ subGroups view=Signal factor=P300 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562P300StdSig\ type bigWig 0.040000 96892.500000\ wgEncodeHaibMethylRrbsMyometrDukeSitesRep1 Myometr 1 bed 9 + Myometr Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 136 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Myometr Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Myometr 1\ subGroups cellType=t3MYOMETR obtainedBy=DUKE treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsMyometrDukeSitesRep1\ type bed 9 +\ wgEncodeDukeAffyExonNhaSimpleSignalRep1V2 NH-A 1 bigBed 6 + NH-A Exon array Signal Rep 1 from ENCODE/Duke 0 136 0 0 0 127 127 127 1 0 0 expression 1 longLabel NH-A Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel NH-A 1\ subGroups cellType=t3NHA treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonNhaSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeUwAffyExonArrayNhaSimpleSignalRep1 NH-A 1 broadPeak NH-A Exon array Signal Rep 1 from ENCODE/UW 0 136 0 0 0 127 127 127 0 0 0 expression 1 longLabel NH-A Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel NH-A 1\ subGroups cellType=t3NHA rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayNhaSimpleSignalRep1\ type broadPeak\ wgEncodeGisRnaPetSknshCytosolPapMinusRawRep3 SKSH cyto pA+ - 3 bigWig 1.000000 1041820.000000 SK-N-SH cytosol polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS 2 136 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH cytosol polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel SKSH cyto pA+ - 3\ subGroups view=v2MinusRawSignal cellType=bSKNSH cloned=Free localization=cytosol rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetSknshCytosolPapMinusRawRep3\ type bigWig 1.000000 1041820.000000\ wgEncodeUwHistoneAg04450H3k4me3StdRawRep1 AG50 H3K4M3 Sg 1 bigWig 1.000000 4594.000000 AG04450 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 137 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04450 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG50 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3AG04450 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg04450H3k4me3StdRawRep1\ type bigWig 1.000000 4594.000000\ wgEncodeUwDnaseMscPkRep2 Bon MarMSC Pk 2 narrowPeak Bone Marrow MSC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 137 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Bone Marrow MSC DNaseI HS Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Bon MarMSC Pk 2\ subGroups view=Peaks cellType=t3BONEMARROWMSC treatment=None rep=rep2\ track wgEncodeUwDnaseMscPkRep2\ type narrowPeak\ pgNA12881 CEU NA12881 pgSnp CEU pedigree 1463, NA12881 (Complete Genomics) 0 137 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU pedigree 1463, NA12881 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12881\ subGroups view=C_CG id=CPed_GS12881 type=SNP\ track pgNA12881\ wgEncodeUwRepliSeqGm12812PkRep1 GM12812 Pk 1 bed 9 GM12812 Repli-seq Peaks Rep 1 from ENCODE/UW 0 137 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM12812 Repli-seq Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPeaks off\ shortLabel GM12812 Pk 1\ subGroups view=v2Peaks cellType=t3GM12812 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm12812PkRep1\ type bed 9\ encTfChipPkENCFF556PIY GM12878 JUND narrowPeak Transcription Factor ChIP-seq Peaks of JUND in GM12878 from ENCODE 3 (ENCFF556PIY) 1 137 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of JUND in GM12878 from ENCODE 3 (ENCFF556PIY)\ parent encTfChipPk off\ shortLabel GM12878 JUND\ subGroups cellType=GM12878 factor=JUND\ track encTfChipPkENCFF556PIY\ wgEncodeOpenChromDnaseGm12891Sig GM12891 DS bigWig 0.000000 1.893100 GM12891 DNaseI HS Density Signal from ENCODE/Duke 2 137 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM12891 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel GM12891 DS\ subGroups view=SIG cellType=t3GM12891 treatment=zNONE\ track wgEncodeOpenChromDnaseGm12891Sig\ type bigWig 0.000000 1.893100\ wgEncodeOpenChromChipGm13977CtcfBaseOverlapSignalRep1 GM13977 CTCF OS bigWig 0.000000 2345.000000 GM13977 CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 137 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM13977 CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel GM13977 CTCF OS\ subGroups view=SIGBO factor=CTCF cellType=t3GM13977 treatment=AANONE\ track wgEncodeOpenChromChipGm13977CtcfBaseOverlapSignalRep1\ type bigWig 0.000000 2345.000000\ wgEncodeUwTfbsGm12865CtcfStdHotspotsRep1 GM65 CTCF Ht 1 broadPeak GM12865 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 137 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12865 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM65 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3GM12865 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12865CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsGm12878Runx3sc101553V0422111PkRep2 GM78 RUNX3 V11 2 broadPeak GM12878 RUNX3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 137 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 RUNX3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 RUNX3 V11 2\ subGroups view=Peaks factor=RUNX3SC101553 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Runx3sc101553V0422111PkRep2\ type broadPeak\ wgEncodeAwgTfbsHaibH1hescSp4v20V0422111UniPk H1-hESC SP4 narrowPeak H1-hESC TFBS Uniform Peaks of SP4_(V-20) from ENCODE/HudsonAlpha/Analysis 1 137 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of SP4_(V-20) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC SP4\ subGroups tier=a10 cellType=a10H1HESC factor=SP4 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescSp4v20V0422111UniPk\ wgEncodeSydhTfbsH1hescRad21IggrabPk H1ES Rad2 IgR narrowPeak H1-hESC Rad21 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 137 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Rad21 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES Rad2 IgR\ subGroups view=Peaks factor=RAD21 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescRad21IggrabPk\ type narrowPeak\ wgEncodeRikenCageHelas3NucleolusTotalTssHmmV2 HeLa nlos tot bed 6 HeLa-S3 nucleolus total CAGE TSS HMM from ENCODE/RIKEN 3 137 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 nucleolus total CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HeLa nlos tot\ subGroups view=TssHmm cellType=t2HELAS3 localization=nucleolus rnaExtract=total rep=Pooled rank=rankP\ track wgEncodeRikenCageHelas3NucleolusTotalTssHmmV2\ type bed 6\ wgEncodeCshlShortRnaSeqHepg2CellShorttotalTapPlusRawRep1 HepG cell TAP + 1 bigWig 1.000000 4470346.000000 HepG2 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 137 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HepG cell TAP + 1\ subGroups view=PlusSignal cellType=t2HEPG2 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHepg2CellShorttotalTapPlusRawRep1\ type bigWig 1.000000 4470346.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day05Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_forward 0 137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep3.CNhs13729.13356-143E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13356-143E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day05Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_forward 1 137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep3.CNhs13729.13356-143E8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13356-143E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8\ urlLabel FANTOM5 Details:\ wgEncodeCaltechRnaSeqHsmmR2x75Il200SplicesRep1V2 HSMM 2x75 Sp 1 bam HSMM 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 137 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSMM 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel HSMM 2x75 Sp 1\ subGroups view=Splices cellType=t3HSMM insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqHsmmR2x75Il200SplicesRep1V2\ type bam\ wgEncodeUwDgfHsmmHotspots HSMM Hot broadPeak HSMM DNaseI DGF Hotspots from ENCODE/UW 0 137 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMM DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HSMM Hot\ subGroups view=Hotspots cellType=t3HSMM treatment=aNONE rep=rep1\ track wgEncodeUwDgfHsmmHotspots\ type broadPeak\ wgEncodeCshlLongRnaSeqK562NucleoplasmTotalAlnRep4 K562 ncpm tot A 2 bam K562 nucleoplasm total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 137 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleoplasm total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel K562 ncpm tot A 2\ subGroups view=Alignments cellType=t1K562 localization=NUCLEOPLASM rnaExtract=TOTAL rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqK562NucleoplasmTotalAlnRep4\ type bam\ wgEncodeBroadHistoneK562PcafPk K562 PCAF broadPeak K562 PCAF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 137 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 PCAF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 PCAF\ subGroups view=Peaks factor=PCAF cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562PcafPk\ type broadPeak\ wgEncodeHaibMethylRrbsMyometrDukeSitesRep2 Myometr 2 bed 9 + Myometr Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 137 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Myometr Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Myometr 2\ subGroups cellType=t3MYOMETR obtainedBy=DUKE treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsMyometrDukeSitesRep2\ type bed 9 +\ wgEncodeDukeAffyExonNhaSimpleSignalRep2V2 NH-A 2 bigBed 6 + NH-A Exon array Signal Rep 2 from ENCODE/Duke 0 137 0 0 0 127 127 127 1 0 0 expression 1 longLabel NH-A Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel NH-A 2\ subGroups cellType=t3NHA treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonNhaSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeUwAffyExonArrayNhaSimpleSignalRep2 NH-A 2 broadPeak NH-A Exon array Signal Rep 2 from ENCODE/UW 0 137 0 0 0 127 127 127 0 0 0 expression 1 longLabel NH-A Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel NH-A 2\ subGroups cellType=t3NHA rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayNhaSimpleSignalRep2\ type broadPeak\ wgEncodeGisRnaPetSknshCytosolPapMinusRawRep4 SKSH cyto pA+ - 4 bigWig 1.000000 1157220.000000 SK-N-SH cytosol polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS 2 137 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH cytosol polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel SKSH cyto pA+ - 4\ subGroups view=v2MinusRawSignal cellType=bSKNSH cloned=Free localization=cytosol rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetSknshCytosolPapMinusRawRep4\ type bigWig 1.000000 1157220.000000\ wgEncodeUwHistoneAg04450H3k4me3StdHotspotsRep2 AG50 H3K4M3 Ht 2 broadPeak AG04450 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 138 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel AG50 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3AG04450 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAg04450H3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseMscRawRep2 Bon MarMSC Sg 2 bigWig 1.000000 13054.000000 Bone Marrow MSC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 138 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Bone Marrow MSC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Bon MarMSC Sg 2\ subGroups view=zRSig cellType=t3BONEMARROWMSC treatment=None rep=rep2\ track wgEncodeUwDnaseMscRawRep2\ type bigWig 1.000000 13054.000000\ pgNA12881indel CEU NA12881 indel pgSnp CEU NA12881 indel (Complete Genomics) 0 138 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12881 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12881 indel\ subGroups view=C_CG id=CPed_GS12881 type=Indel\ track pgNA12881indel\ wgEncodeUwRepliSeqGm12812ValleysRep1 GM12812 Vly 1 bed 9 GM12812 Repli-seq Valleys Rep 1 from ENCODE/UW 0 138 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM12812 Repli-seq Valleys Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewValleys off\ shortLabel GM12812 Vly 1\ subGroups view=v3Valleys cellType=t3GM12812 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm12812ValleysRep1\ type bed 9\ encTfChipPkENCFF996RRT GM12878 KDM1A narrowPeak Transcription Factor ChIP-seq Peaks of KDM1A in GM12878 from ENCODE 3 (ENCFF996RRT) 1 138 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of KDM1A in GM12878 from ENCODE 3 (ENCFF996RRT)\ parent encTfChipPk off\ shortLabel GM12878 KDM1A\ subGroups cellType=GM12878 factor=KDM1A\ track encTfChipPkENCFF996RRT\ wgEncodeOpenChromDnaseGm12891BaseOverlapSignal GM12891 OS bigWig 0.000000 209.000000 GM12891 DNaseI HS Overlap Signal from ENCODE/Duke 2 138 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM12891 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel GM12891 OS\ subGroups view=SIGBO cellType=t3GM12891 treatment=zNONE\ track wgEncodeOpenChromDnaseGm12891BaseOverlapSignal\ type bigWig 0.000000 209.000000\ wgEncodeOpenChromChipGm13977InputSig GM13977 Input DS bigWig 0.000000 2.513700 GM13977 Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 138 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM13977 Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel GM13977 Input DS\ subGroups view=SIG factor=zCTRL cellType=t3GM13977 treatment=AANONE\ track wgEncodeOpenChromChipGm13977InputSig\ type bigWig 0.000000 2.513700\ wgEncodeUwTfbsGm12865CtcfStdPkRep1 GM65 CTCF Pk 1 narrowPeak GM12865 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 138 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12865 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM65 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3GM12865 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12865CtcfStdPkRep1\ type narrowPeak\ wgEncodeHaibTfbsGm12878Runx3sc101553V0422111RawRep2 GM78 RUNX3 V11 2 bigWig 0.120723 85.230202 GM12878 RUNX3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 138 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 RUNX3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RUNX3 V11 2\ subGroups view=RawSignal factor=RUNX3SC101553 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Runx3sc101553V0422111RawRep2\ type bigWig 0.120723 85.230202\ wgEncodeAwgTfbsHaibH1hescSrfPcr1xUniPk H1-hESC SRF narrowPeak H1-hESC TFBS Uniform Peaks of SRF from ENCODE/HudsonAlpha/Analysis 1 138 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of SRF from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC SRF\ subGroups tier=a10 cellType=a10H1HESC factor=SRF lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescSrfPcr1xUniPk\ wgEncodeSydhTfbsH1hescRad21IggrabSig H1ES Rad2 IgR bigWig 1.000000 10875.000000 H1-hESC Rad21 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 138 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Rad21 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES Rad2 IgR\ subGroups view=Signal factor=RAD21 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescRad21IggrabSig\ type bigWig 1.000000 10875.000000\ wgEncodeRikenCageHelas3NucleolusTotalPlusSignal HeLa nlus tot + 1 bigWig 0.120000 29534.529297 Hela-S3 nucleolus total CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 138 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel Hela-S3 nucleolus total CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HeLa nlus tot + 1\ subGroups rep=rep0 rank=rank1 view=PlusRawSignal cellType=t2HELAS3 localization=nucleolus rnaExtract=total\ track wgEncodeRikenCageHelas3NucleolusTotalPlusSignal\ type bigWig 0.120000 29534.529297\ wgEncodeCshlShortRnaSeqHepg2CellShorttotalTapPlusRawRep2 HepG cell TAP + 2 bigWig 1.000000 3841099.000000 HepG2 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 138 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HepG cell TAP + 2\ subGroups view=PlusSignal cellType=t2HEPG2 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHepg2CellShorttotalTapPlusRawRep2\ type bigWig 1.000000 3841099.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_ctss_rev Hes3-gfpCardiomyocyticInduction_Day05Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_reverse 0 138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep3.CNhs13729.13356-143E8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13356-143E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_tpm_rev Hes3-gfpCardiomyocyticInduction_Day05Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_reverse 1 138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep3.CNhs13729.13356-143E8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13356-143E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8\ urlLabel FANTOM5 Details:\ wgEncodeCaltechRnaSeqHsmmR2x75Il200SplicesRep2V2 HSMM 2x75 Sp 2 bam HSMM 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 138 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSMM 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel HSMM 2x75 Sp 2\ subGroups view=Splices cellType=t3HSMM insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqHsmmR2x75Il200SplicesRep2V2\ type bam\ wgEncodeUwDgfHsmmPk HSMM Pk narrowPeak HSMM DNaseI DGF Peaks from ENCODE/UW 0 138 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMM DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HSMM Pk\ subGroups view=Peaks cellType=t3HSMM treatment=aNONE rep=rep1\ track wgEncodeUwDgfHsmmPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqK562NucleoplasmTotalContigs K562 ncpm tot C bed 6 + K562 nucleoplasm total RNA-seq Contigs Pooled from ENCODE/CSHL 3 138 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleoplasm total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel K562 ncpm tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1K562 localization=NUCLEOPLASM rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqK562NucleoplasmTotalContigs\ type bed 6 +\ wgEncodeBroadHistoneK562PcafSig K562 PCAF bigWig 0.040000 400.000000 K562 PCAF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 138 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 PCAF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 PCAF\ subGroups view=Signal factor=PCAF cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562PcafSig\ type bigWig 0.040000 400.000000\ wgEncodeHaibMethylRrbsNb4UwSitesRep1 NB4 1 bed 9 + NB4 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 138 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel NB4 1\ subGroups cellType=t3NB4 obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsNb4UwSitesRep1\ type bed 9 +\ wgEncodeUwAffyExonArrayNhbeSimpleSignalRep1 NHBE 1 broadPeak NHBE Exon-array Signal Rep 1 from ENCODE/UW 0 138 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHBE Exon-array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel NHBE 1\ subGroups cellType=t3NHBE rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayNhbeSimpleSignalRep1\ type broadPeak\ wgEncodeDukeAffyExonNhekSimpleSignalRep1V2 NHEK 1 bigBed 6 + NHEK Exon array Signal Rep 1 from ENCODE/Duke 0 138 179 0 134 217 127 194 1 0 0 expression 1 color 179,0,134\ longLabel NHEK Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel NHEK 1\ subGroups cellType=t3NHEK treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonNhekSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeGisRnaPetSknshCytosolPapPlusRawRep3 SKSH cyto pA+ + 3 bigWig 1.000000 838347.000000 SK-N-SH cytosol polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS 2 138 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH cytosol polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel SKSH cyto pA+ + 3\ subGroups view=v2PlusRawSignal cellType=bSKNSH cloned=Free localization=cytosol rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetSknshCytosolPapPlusRawRep3\ type bigWig 1.000000 838347.000000\ wgEncodeUwHistoneAg04450H3k4me3StdPkRep2 AG50 H3K4M3 Pk 2 narrowPeak AG04450 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 139 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel AG50 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3AG04450 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAg04450H3k4me3StdPkRep2\ type narrowPeak\ wgEncodeUwDnaseCaco2HotspotsRep1 Caco2 Ht 1 broadPeak Caco-2 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 139 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel Caco2 Ht 1\ subGroups view=Hot cellType=t3CACO2 rep=rep1 treatment=None\ track wgEncodeUwDnaseCaco2HotspotsRep1\ type broadPeak\ pgNA12882 CEU NA12882 pgSnp CEU pedigree 1463, NA12882 (Complete Genomics) 0 139 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU pedigree 1463, NA12882 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12882\ subGroups view=C_CG id=CPed_GS12882 type=SNP\ track pgNA12882\ wgEncodeUwRepliSeqGm12812WaveSignalRep1 GM12812 Ws 1 bigWig -7.395215 79.570450 GM12812 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW 2 139 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12812 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewWaveSignal off\ shortLabel GM12812 Ws 1\ subGroups view=v4WaveSignal cellType=t3GM12812 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm12812WaveSignalRep1\ type bigWig -7.395215 79.570450\ encTfChipPkENCFF827ZLB GM12878 KLF5 narrowPeak Transcription Factor ChIP-seq Peaks of KLF5 in GM12878 from ENCODE 3 (ENCFF827ZLB) 1 139 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of KLF5 in GM12878 from ENCODE 3 (ENCFF827ZLB)\ parent encTfChipPk off\ shortLabel GM12878 KLF5\ subGroups cellType=GM12878 factor=KLF5\ track encTfChipPkENCFF827ZLB\ wgEncodeOpenChromDnaseGm12892Pk GM12892 Pk narrowPeak GM12892 DNaseI HS Peaks from ENCODE/Duke 3 139 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM12892 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel GM12892 Pk\ subGroups view=Peaks cellType=t3GM12892 treatment=zNONE\ track wgEncodeOpenChromDnaseGm12892Pk\ type narrowPeak\ wgEncodeOpenChromChipGm19238CtcfPk GM19238 CTCF Pk narrowPeak GM19238 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 139 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM19238 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel GM19238 CTCF Pk\ subGroups treatment=AANONE view=Peaks factor=CTCF cellType=t3GM19238\ track wgEncodeOpenChromChipGm19238CtcfPk\ type narrowPeak\ wgEncodeUwTfbsGm12865CtcfStdRawRep1 GM65 CTCF Sg 1 bigWig 1.000000 4888.000000 GM12865 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 139 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12865 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM65 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3GM12865 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12865CtcfStdRawRep1\ type bigWig 1.000000 4888.000000\ wgEncodeHaibTfbsGm12878RxraPcr1xPkRep1 GM78 RXRA PCR1 1 broadPeak GM12878 RXRA PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 139 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 RXRA PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 RXRA PCR1 1\ subGroups view=Peaks factor=RXRA cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878RxraPcr1xPkRep1\ type broadPeak\ wgEncodeAwgTfbsSydhH1hescSuz12UcdUniPk H1-hESC SUZ12 narrowPeak H1-hESC TFBS Uniform Peaks of SUZ12 from ENCODE/USC/Analysis 1 139 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of SUZ12 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC SUZ12\ subGroups tier=a10 cellType=a10H1HESC factor=SUZ12 lab=USC\ track wgEncodeAwgTfbsSydhH1hescSuz12UcdUniPk\ wgEncodeSydhTfbsH1hescRfx5200401194IggrabPk H1ES RFX5 IgR narrowPeak H1-hESC RFX5 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 139 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC RFX5 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES RFX5 IgR\ subGroups view=Peaks factor=RFX5200401194 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescRfx5200401194IggrabPk\ type narrowPeak\ wgEncodeRikenCageHelas3NucleolusTotalMinusSignal HeLa nlus tot - 1 bigWig 0.120000 21887.250000 Hela-S3 nucleolus total CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 139 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel Hela-S3 nucleolus total CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HeLa nlus tot - 1\ subGroups rep=rep0 rank=rank1 view=MinusRawSignal cellType=t2HELAS3 localization=nucleolus rnaExtract=total\ track wgEncodeRikenCageHelas3NucleolusTotalMinusSignal\ type bigWig 0.120000 21887.250000\ wgEncodeCshlShortRnaSeqHepg2CytosolShorttotalTapContigs HepG cyto TAP C bed 6 HepG2 TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL 2 139 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HepG cyto TAP C\ subGroups view=Contigs cellType=t2HEPG2 localization=CYTOSOL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqHepg2CytosolShorttotalTapContigs\ type bed 6\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day06Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_forward 0 139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep1.CNhs13658.13333-143C3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13333-143C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day06Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_forward 1 139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep1.CNhs13658.13333-143C3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13333-143C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHsmmSig HSMM Sig bigWig 1.000000 119349.000000 HSMM DNaseI DGF Per-base Signal from ENCODE/UW 2 139 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HSMM DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HSMM Sig\ subGroups view=Signal cellType=t3HSMM treatment=aNONE rep=rep1\ track wgEncodeUwDgfHsmmSig\ type bigWig 1.000000 119349.000000\ wgEncodeCshlLongRnaSeqK562NucleoplasmTotalJunctions K562 ncpm tot J bed 6 + K562 nucleoplasm total RNA-seq Junctions Pooled from ENCODE/CSHL 0 139 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleoplasm total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel K562 ncpm tot J\ subGroups view=Junctions cellType=t1K562 localization=NUCLEOPLASM rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqK562NucleoplasmTotalJunctions\ type bed 6 +\ wgEncodeBroadHistoneK562Phf8a301772aStdPk K562 PHF8 broadPeak K562 PHF8 (A301-772A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 139 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 PHF8 (A301-772A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 PHF8\ subGroups view=Peaks factor=PHF8A301772A cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Phf8a301772aStdPk\ type broadPeak\ wgEncodeHaibMethylRrbsNb4UwSitesRep2 NB4 2 bed 9 + NB4 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 139 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel NB4 2\ subGroups cellType=t3NB4 obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsNb4UwSitesRep2\ type bed 9 +\ wgEncodeUwAffyExonArrayNhbeSimpleSignalRep2 NHBE 2 broadPeak NHBE Exon-array Signal Rep 2 from ENCODE/UW 0 139 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHBE Exon-array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel NHBE 2\ subGroups cellType=t3NHBE rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayNhbeSimpleSignalRep2\ type broadPeak\ wgEncodeDukeAffyExonNhekSimpleSignalRep2V2 NHEK 2 bigBed 6 + NHEK Exon array Signal Rep 2 from ENCODE/Duke 0 139 179 0 134 217 127 194 1 0 0 expression 1 color 179,0,134\ longLabel NHEK Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel NHEK 2\ subGroups cellType=t3NHEK treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonNhekSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeCaltechRnaSeqNhekR2x75Il200AlignsRep1V2 NHEK 2x75 A 1 bam NHEK 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 139 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel NHEK 2x75 A 1\ subGroups view=Aligns cellType=t3NHEK insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqNhekR2x75Il200AlignsRep1V2\ type bam\ wgEncodeGisRnaPetSknshCytosolPapPlusRawRep4 SKSH cyto pA+ + 4 bigWig 1.000000 975411.000000 SK-N-SH cytosol polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS 2 139 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH cytosol polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel SKSH cyto pA+ + 4\ subGroups view=v2PlusRawSignal cellType=bSKNSH cloned=Free localization=cytosol rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetSknshCytosolPapPlusRawRep4\ type bigWig 1.000000 975411.000000\ wgEncodeUwHistoneAg04450H3k4me3StdRawRep2 AG50 H3K4M3 Sg 2 bigWig 1.000000 4459.000000 AG04450 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 140 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04450 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG50 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3AG04450 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAg04450H3k4me3StdRawRep2\ type bigWig 1.000000 4459.000000\ wgEncodeUwDnaseCaco2PkRep1 Caco2 Pk 1 narrowPeak Caco-2 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 140 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Caco2 Pk 1\ subGroups view=Peaks cellType=t3CACO2 rep=rep1 treatment=None\ track wgEncodeUwDnaseCaco2PkRep1\ type narrowPeak\ pgNA12882indel CEU NA12882 indel pgSnp CEU NA12882 indel (Complete Genomics) 0 140 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12882 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12882 indel\ subGroups view=C_CG id=CPed_GS12882 type=Indel\ track pgNA12882indel\ wgEncodeUwRepliSeqGm12812SumSignalRep1 GM12812 Sd 1 bigWig 1.000000 3003.000000 GM12812 Repli-seq Summed Densities Rep 1 from ENCODE/UW 0 140 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12812 Repli-seq Summed Densities Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewSumSignal off\ shortLabel GM12812 Sd 1\ subGroups view=v5SumSignal cellType=t3GM12812 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm12812SumSignalRep1\ type bigWig 1.000000 3003.000000\ encTfChipPkENCFF689AXJ GM12878 MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in GM12878 from ENCODE 3 (ENCFF689AXJ) 1 140 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in GM12878 from ENCODE 3 (ENCFF689AXJ)\ parent encTfChipPk off\ shortLabel GM12878 MAFK\ subGroups cellType=GM12878 factor=MAFK\ track encTfChipPkENCFF689AXJ\ wgEncodeOpenChromDnaseGm12892Sig GM12892 DS bigWig 0.000000 1.880000 GM12892 DNaseI HS Density Signal from ENCODE/Duke 2 140 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM12892 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel GM12892 DS\ subGroups view=SIG cellType=t3GM12892 treatment=zNONE\ track wgEncodeOpenChromDnaseGm12892Sig\ type bigWig 0.000000 1.880000\ wgEncodeOpenChromChipGm19238CtcfSig GM19238 CTCF DS bigWig 0.000000 15.617600 GM19238 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 140 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM19238 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel GM19238 CTCF DS\ subGroups treatment=AANONE view=SIG factor=CTCF cellType=t3GM19238\ track wgEncodeOpenChromChipGm19238CtcfSig\ type bigWig 0.000000 15.617600\ wgEncodeUwTfbsGm12865CtcfStdHotspotsRep2 GM65 CTCF Ht 2 broadPeak GM12865 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 140 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12865 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM65 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3GM12865 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12865CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsGm12878RxraPcr1xRawRep1 GM78 RXRA PCR1 1 bigWig 0.160464 114.411003 GM12878 RXRA PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 140 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 RXRA PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RXRA PCR1 1\ subGroups view=RawSignal factor=RXRA cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878RxraPcr1xRawRep1\ type bigWig 0.160464 114.411003\ wgEncodeAwgTfbsHaibH1hescTaf1V0416102UniPk H1-hESC TAF1 narrowPeak H1-hESC TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis 1 140 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC TAF1\ subGroups tier=a10 cellType=a10H1HESC factor=TAF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescTaf1V0416102UniPk\ wgEncodeSydhTfbsH1hescRfx5200401194IggrabSig H1ES RFX5 IgR bigWig 1.000000 15995.000000 H1-hESC RFX5 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 140 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC RFX5 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES RFX5 IgR\ subGroups view=Signal factor=RFX5200401194 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescRfx5200401194IggrabSig\ type bigWig 1.000000 15995.000000\ wgEncodeRikenCageHelas3NucleolusTotalAln HeLa nlus tot A 1 bam HeLa-S3 nucleolus total CAGE Alignments Rep 1 from ENCODE/RIKEN 0 140 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 nucleolus total CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HeLa nlus tot A 1\ subGroups rep=rep0 rank=rank1 view=Alignments cellType=t2HELAS3 localization=nucleolus rnaExtract=total\ track wgEncodeRikenCageHelas3NucleolusTotalAln\ type bam\ wgEncodeCshlShortRnaSeqHepg2CytosolShorttotalTapMinusRawRep1 HepG cyto TAP - 1 bigWig 1.000000 2034826.000000 HepG2 TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 140 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HepG cyto TAP - 1\ subGroups view=MinusSignal cellType=t2HEPG2 localization=CYTOSOL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHepg2CytosolShorttotalTapMinusRawRep1\ type bigWig 1.000000 2034826.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_ctss_rev Hes3-gfpCardiomyocyticInduction_Day06Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_reverse 0 140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep1.CNhs13658.13333-143C3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13333-143C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_tpm_rev Hes3-gfpCardiomyocyticInduction_Day06Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_reverse 1 140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep1.CNhs13658.13333-143C3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13333-143C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHsmmRaw HSMM Raw bigWig 1.000000 273155.000000 HSMM DNaseI DGF Raw Signal from ENCODE/UW 0 140 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HSMM DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HSMM Raw\ subGroups view=zRaw cellType=t3HSMM treatment=aNONE rep=rep1\ track wgEncodeUwDgfHsmmRaw\ type bigWig 1.000000 273155.000000\ wgEncodeCshlLongRnaSeqK562NucleoplasmTotalMinusRawSigRep3 K562 ncpm tot - 1 bigWig 1.000000 3269539.000000 K562 nucleoplasm total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 140 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleoplasm total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel K562 ncpm tot - 1\ subGroups view=MinusSignal cellType=t1K562 localization=NUCLEOPLASM rnaExtract=TOTAL rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqK562NucleoplasmTotalMinusRawSigRep3\ type bigWig 1.000000 3269539.000000\ wgEncodeBroadHistoneK562Phf8a301772aStdSig K562 PHF8 bigWig 0.040000 19745.099609 K562 PHF8 (A301-772A) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 140 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 PHF8 (A301-772A) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 PHF8\ subGroups view=Signal factor=PHF8A301772A cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Phf8a301772aStdSig\ type bigWig 0.040000 19745.099609\ wgEncodeHaibMethylRrbsNhaUwSitesRep1 NH-A 1 bed 9 + NH-A Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 140 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NH-A Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel NH-A 1\ subGroups cellType=t3NHA obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsNhaUwSitesRep1\ type bed 9 +\ wgEncodeUwAffyExonArrayNhdfadSimpleSignalRep1 NHDF-Ad 1 broadPeak NHDF-Ad Exon array Signal Rep 1 from ENCODE/UW 0 140 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHDF-Ad Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel NHDF-Ad 1\ subGroups cellType=t3NHDFAD rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayNhdfadSimpleSignalRep1\ type broadPeak\ wgEncodeCaltechRnaSeqNhekR2x75Il200AlignsRep2V2 NHEK 2x75 A 2 bam NHEK 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 140 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel NHEK 2x75 A 2\ subGroups view=Aligns cellType=t3NHEK insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqNhekR2x75Il200AlignsRep2V2\ type bam\ wgEncodeDukeAffyExonOsteoSimpleSignalRep1V2 Osteobl 1 bigBed 6 + Osteobl Exon array Signal Rep 1 from ENCODE/Duke 0 140 0 0 0 127 127 127 1 0 0 expression 1 longLabel Osteobl Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Osteobl 1\ subGroups cellType=t3OSTEOBLASTS treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonOsteoSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeGisRnaPetSknshCytosolPapAlnRep3 SKSH cyto pA+ A 3 bam SK-N-SH cytosol polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS 0 140 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH cytosol polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel SKSH cyto pA+ A 3\ subGroups view=v3Alignments cellType=bSKNSH cloned=Free localization=cytosol rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetSknshCytosolPapAlnRep3\ type bam\ wgEncodeUwHistoneAg04450H3k09me3StdHotspotsRep1 AG50 H3K9me3 Ht 1 broadPeak AG04450 H3K9me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 141 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 H3K9me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel AG50 H3K9me3 Ht 1\ subGroups view=Hot factor=H3K09ME3 cellType=t3AG04450 treatment=zNone rep=rep1\ track wgEncodeUwHistoneAg04450H3k09me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseCaco2RawRep1 Caco2 Sg 1 bigWig 1.000000 9694.000000 Caco-2 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 141 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Caco-2 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Caco2 Sg 1\ subGroups view=zRSig cellType=t3CACO2 rep=rep1 treatment=None\ track wgEncodeUwDnaseCaco2RawRep1\ type bigWig 1.000000 9694.000000\ pgNA12883 CEU NA12883 pgSnp CEU pedigree 1463, NA12883 (Complete Genomics) 0 141 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU pedigree 1463, NA12883 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12883\ subGroups view=C_CG id=CPed_GS12883 type=SNP\ track pgNA12883\ wgEncodeUwRepliSeqGm12813G1bPctSignalRep1 GM12813 G1b 1 bigWig 1.000000 100.000000 GM12813 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 141 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12813 G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12813 G1b 1\ subGroups view=v1PctSignal cellType=t3GM12813 phase=p1G1B rep=rep1\ track wgEncodeUwRepliSeqGm12813G1bPctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF083KVY GM12878 MAX narrowPeak Transcription Factor ChIP-seq Peaks of MAX in GM12878 from ENCODE 3 (ENCFF083KVY) 1 141 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of MAX in GM12878 from ENCODE 3 (ENCFF083KVY)\ parent encTfChipPk off\ shortLabel GM12878 MAX\ subGroups cellType=GM12878 factor=MAX\ track encTfChipPkENCFF083KVY\ wgEncodeOpenChromDnaseGm12892BaseOverlapSignal GM12892 OS bigWig 0.000000 220.000000 GM12892 DNaseI HS Overlap Signal from ENCODE/Duke 2 141 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM12892 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel GM12892 OS\ subGroups view=SIGBO cellType=t3GM12892 treatment=zNONE\ track wgEncodeOpenChromDnaseGm12892BaseOverlapSignal\ type bigWig 0.000000 220.000000\ wgEncodeOpenChromChipGm19238CtcfBaseOverlapSignal GM19238 CTCF OS bigWig 0.000000 3403.000000 GM19238 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 141 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM19238 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel GM19238 CTCF OS\ subGroups treatment=AANONE view=SIGBO factor=CTCF cellType=t3GM19238\ track wgEncodeOpenChromChipGm19238CtcfBaseOverlapSignal\ type bigWig 0.000000 3403.000000\ wgEncodeUwTfbsGm12865CtcfStdPkRep2 GM65 CTCF Pk 2 narrowPeak GM12865 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 141 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12865 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM65 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3GM12865 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12865CtcfStdPkRep2\ type narrowPeak\ wgEncodeHaibTfbsGm12878RxraPcr1xPkRep2 GM78 RXRA PCR1 2 broadPeak GM12878 RXRA PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 141 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 RXRA PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 RXRA PCR1 2\ subGroups view=Peaks factor=RXRA cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878RxraPcr1xPkRep2\ type broadPeak\ wgEncodeAwgTfbsHaibH1hescTaf7sc101167V0416102UniPk H1-hESC TAF7 narrowPeak H1-hESC TFBS Uniform Peaks of TAF7_(SC-101167) from ENCODE/HudsonAlpha/Analysis 1 141 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of TAF7_(SC-101167) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC TAF7\ subGroups tier=a10 cellType=a10H1HESC factor=TAF7 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescTaf7sc101167V0416102UniPk\ wgEncodeSydhTfbsH1hescSin3anb6001263IggrabPk H1ES SIN3A IgR narrowPeak H1-hESC SIN3A IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 141 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC SIN3A IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES SIN3A IgR\ subGroups view=Peaks factor=SIN3ANB6001263 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescSin3anb6001263IggrabPk\ type narrowPeak\ wgEncodeRikenCageHelas3NucleusPamTssHmm HeLa nucl pA- bed 6 HeLa-S3 nucleus polyA- CAGE TSS HMM from ENCODE/RIKEN 3 141 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 nucleus polyA- CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HeLa nucl pA-\ subGroups view=TssHmm cellType=t2HELAS3 localization=nucleus rnaExtract=pAM rep=Pooled rank=rankP\ track wgEncodeRikenCageHelas3NucleusPamTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqHepg2CytosolShorttotalTapMinusRawRep2 HepG cyto TAP - 2 bigWig 1.000000 756377.000000 HepG2 TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 141 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HepG cyto TAP - 2\ subGroups view=MinusSignal cellType=t2HEPG2 localization=CYTOSOL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHepg2CytosolShorttotalTapMinusRawRep2\ type bigWig 1.000000 756377.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day06Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_forward 0 141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep2.CNhs13718.13345-143D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13345-143D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day06Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_forward 1 141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep2.CNhs13718.13345-143D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13345-143D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHvmfHotspots HVMF Hot broadPeak HVMF DNaseI DGF Hotspots from ENCODE/UW 0 141 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HVMF DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel HVMF Hot\ subGroups view=Hotspots cellType=t3HVMF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHvmfHotspots\ type broadPeak\ wgEncodeCshlLongRnaSeqK562NucleoplasmTotalMinusRawSigRep4 K562 ncpm tot - 2 bigWig 1.000000 1307707.000000 K562 nucleoplasm total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 141 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleoplasm total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel K562 ncpm tot - 2\ subGroups view=MinusSignal cellType=t1K562 localization=NUCLEOPLASM rnaExtract=TOTAL rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqK562NucleoplasmTotalMinusRawSigRep4\ type bigWig 1.000000 1307707.000000\ wgEncodeBroadHistoneK562Plu1StdPk K562 PLU1 broadPeak K562 PLU1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 141 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 PLU1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 PLU1\ subGroups view=Peaks factor=PLU1 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Plu1StdPk\ type broadPeak\ wgEncodeHaibMethylRrbsNhaUwSitesRep2 NH-A 2 bed 9 + NH-A Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 141 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NH-A Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel NH-A 2\ subGroups cellType=t3NHA obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsNhaUwSitesRep2\ type bed 9 +\ wgEncodeUwAffyExonArrayNhdfadSimpleSignalRep2 NHDF-Ad 2 broadPeak NHDF-Ad Exon array Signal Rep 2 from ENCODE/UW 0 141 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHDF-Ad Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel NHDF-Ad 2\ subGroups cellType=t3NHDFAD rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayNhdfadSimpleSignalRep2\ type broadPeak\ wgEncodeCaltechRnaSeqNhekR2x75Th1014Il200USigRep1V4 NHEK 2x75 Sg 1 bigWig 0.018800 424045.312500 NHEK 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech 2 141 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel NHEK 2x75 Sg 1\ subGroups view=Signal cellType=t3NHEK insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqNhekR2x75Th1014Il200USigRep1V4\ type bigWig 0.018800 424045.312500\ wgEncodeDukeAffyExonOsteoSimpleSignalRep2V2 Osteobl 2 bigBed 6 + Osteobl Exon array Signal Rep 2 from ENCODE/Duke 0 141 0 0 0 127 127 127 1 0 0 expression 1 longLabel Osteobl Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Osteobl 2\ subGroups cellType=t3OSTEOBLASTS treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonOsteoSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeGisRnaPetSknshCytosolPapAlnRep4 SKSH cyto pA+ A 4 bam SK-N-SH cytosol polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS 0 141 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH cytosol polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel SKSH cyto pA+ A 4\ subGroups view=v3Alignments cellType=bSKNSH cloned=Free localization=cytosol rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetSknshCytosolPapAlnRep4\ type bam\ wgEncodeUwHistoneAg04450H3k09me3StdPkRep1 AG50 H3K9me3 Pk 1 narrowPeak AG04450 H3K9me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 142 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 H3K9me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel AG50 H3K9me3 Pk 1\ subGroups view=Peaks factor=H3K09ME3 cellType=t3AG04450 treatment=zNone rep=rep1\ track wgEncodeUwHistoneAg04450H3k09me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseCaco2HotspotsRep2 Caco2 Ht 2 broadPeak Caco-2 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 142 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel Caco2 Ht 2\ subGroups view=Hot cellType=t3CACO2 rep=rep2 treatment=None\ track wgEncodeUwDnaseCaco2HotspotsRep2\ type broadPeak\ pgNA12883indel CEU NA12883 indel pgSnp CEU NA12883 indel (Complete Genomics) 0 142 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12883 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12883 indel\ subGroups view=C_CG id=CPed_GS12883 type=Indel\ track pgNA12883indel\ wgEncodeUwRepliSeqGm12813S1PctSignalRep1 GM12813 S1 1 bigWig 1.000000 100.000000 GM12813 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 142 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12813 S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12813 S1 1\ subGroups view=v1PctSignal cellType=t3GM12813 phase=p2S1 rep=rep1\ track wgEncodeUwRepliSeqGm12813S1PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF328QLX GM12878 MEF2A narrowPeak Transcription Factor ChIP-seq Peaks of MEF2A in GM12878 from ENCODE 3 (ENCFF328QLX) 1 142 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of MEF2A in GM12878 from ENCODE 3 (ENCFF328QLX)\ parent encTfChipPk off\ shortLabel GM12878 MEF2A\ subGroups cellType=GM12878 factor=MEF2A\ track encTfChipPkENCFF328QLX\ wgEncodeOpenChromDnaseGm13976Pk GM13976 Pk narrowPeak GM13976 DNaseI HS Peaks from ENCODE/Duke 3 142 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM13976 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel GM13976 Pk\ subGroups view=Peaks cellType=t3GM13976 treatment=zNONE\ track wgEncodeOpenChromDnaseGm13976Pk\ type narrowPeak\ wgEncodeOpenChromChipGm19239CtcfPk GM19239 CTCF Pk narrowPeak GM19239 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 142 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM19239 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel GM19239 CTCF Pk\ subGroups treatment=AANONE view=Peaks factor=CTCF cellType=t3GM19239\ track wgEncodeOpenChromChipGm19239CtcfPk\ type narrowPeak\ wgEncodeUwTfbsGm12865CtcfStdRawRep2 GM65 CTCF Sg 2 bigWig 1.000000 3768.000000 GM12865 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 142 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12865 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM65 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3GM12865 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12865CtcfStdRawRep2\ type bigWig 1.000000 3768.000000\ wgEncodeHaibTfbsGm12878RxraPcr1xRawRep2 GM78 RXRA PCR1 2 bigWig 0.213342 371.108002 GM12878 RXRA PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 142 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 RXRA PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RXRA PCR1 2\ subGroups view=RawSignal factor=RXRA cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878RxraPcr1xRawRep2\ type bigWig 0.213342 371.108002\ wgEncodeAwgTfbsSydhH1hescTbpIggrabUniPk H1-hESC TBP narrowPeak H1-hESC TFBS Uniform Peaks of TBP from ENCODE/Stanford/Analysis 1 142 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of TBP from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC TBP\ subGroups tier=a10 cellType=a10H1HESC factor=TBP lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescTbpIggrabUniPk\ wgEncodeSydhTfbsH1hescSin3anb6001263IggrabSig H1ES SIN3A IgR bigWig 1.000000 15108.000000 H1-hESC SIN3A IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 142 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC SIN3A IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES SIN3A IgR\ subGroups view=Signal factor=SIN3ANB6001263 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescSin3anb6001263IggrabSig\ type bigWig 1.000000 15108.000000\ wgEncodeRikenCageHelas3NucleusPamPlusRawRep1 HeLa nucl pA- + 1 bigWig 1.000000 983775.000000 HeLa-S3 nucleus polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 142 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 nucleus polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HeLa nucl pA- + 1\ subGroups view=PlusRawSignal cellType=t2HELAS3 localization=nucleus rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageHelas3NucleusPamPlusRawRep1\ type bigWig 1.000000 983775.000000\ wgEncodeCshlShortRnaSeqHepg2CytosolShorttotalTapPlusRawRep1 HepG cyto TAP + 1 bigWig 1.000000 2592219.000000 HepG2 TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 142 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HepG cyto TAP + 1\ subGroups view=PlusSignal cellType=t2HEPG2 localization=CYTOSOL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHepg2CytosolShorttotalTapPlusRawRep1\ type bigWig 1.000000 2592219.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_ctss_rev Hes3-gfpCardiomyocyticInduction_Day06Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_reverse 0 142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep2.CNhs13718.13345-143D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13345-143D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_tpm_rev Hes3-gfpCardiomyocyticInduction_Day06Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_reverse 1 142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep2.CNhs13718.13345-143D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13345-143D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHvmfPk HVMF Pk narrowPeak HVMF DNaseI DGF Peaks from ENCODE/UW 0 142 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HVMF DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel HVMF Pk\ subGroups view=Peaks cellType=t3HVMF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHvmfPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqK562NucleoplasmTotalPlusRawSigRep3 K562 ncpm tot + 1 bigWig 1.000000 2322045.000000 K562 nucleoplasm total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 142 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleoplasm total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel K562 ncpm tot + 1\ subGroups view=PlusSignal cellType=t1K562 localization=NUCLEOPLASM rnaExtract=TOTAL rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqK562NucleoplasmTotalPlusRawSigRep3\ type bigWig 1.000000 2322045.000000\ wgEncodeBroadHistoneK562Plu1StdSig K562 PLU1 bigWig 0.040000 26953.400391 K562 PLU1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 142 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 PLU1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 PLU1\ subGroups view=Signal factor=PLU1 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Plu1StdSig\ type bigWig 0.040000 26953.400391\ wgEncodeHaibMethylRrbsNhbeUwSitesRep1 NHBE 1 bed 9 + NHBE Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 142 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHBE Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel NHBE 1\ subGroups cellType=t3NHBE obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsNhbeUwSitesRep1\ type bed 9 +\ wgEncodeUwAffyExonArrayNhdfneoSimpleSignalRep1 NHDF-neo 1 broadPeak NHDF-neo Exon array Signal Rep 1 from ENCODE/UW 0 142 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHDF-neo Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel NHDF-neo 1\ subGroups cellType=t3NHDFNEO rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayNhdfneoSimpleSignalRep1\ type broadPeak\ wgEncodeCaltechRnaSeqNhekR2x75Th1014Il200USigRep2V4 NHEK 2x75 Sg 2 bigWig 0.025000 204766.500000 NHEK 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech 2 142 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel NHEK 2x75 Sg 2\ subGroups view=Signal cellType=t3NHEK insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqNhekR2x75Th1014Il200USigRep2V4\ type bigWig 0.025000 204766.500000\ wgEncodeDukeAffyExonOsteoSimpleSignalRep3V2 Osteobl 3 bigBed 6 + Osteobl Exon array Signal Rep 3 from ENCODE/Duke 0 142 0 0 0 127 127 127 1 0 0 expression 1 longLabel Osteobl Exon array Signal Rep 3 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Osteobl 3\ subGroups cellType=t3OSTEOBLASTS treatment=zNONE rep=rep3\ track wgEncodeDukeAffyExonOsteoSimpleSignalRep3V2\ type bigBed 6 +\ wgEncodeGisRnaPetSknshNucleusPapClusters SKSH nucl pA+ bed 6 + SK-N-SH nucleus polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS 2 142 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH nucleus polyA+ clone-free RNA PET Clusters Pooled from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel SKSH nucl pA+\ subGroups view=v1Clusters cellType=bSKNSH cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=none\ track wgEncodeGisRnaPetSknshNucleusPapClusters\ type bed 6 +\ wgEncodeUwHistoneAg04450H3k09me3StdRawRep1 AG50 H3K9m3 Raw 1 bigWig 1.000000 28743.000000 AG04450 H3K9me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 143 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04450 H3K9me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG50 H3K9m3 Raw 1\ subGroups view=zRSig factor=H3K09ME3 cellType=t3AG04450 treatment=zNone rep=rep1\ track wgEncodeUwHistoneAg04450H3k09me3StdRawRep1\ type bigWig 1.000000 28743.000000\ wgEncodeUwDnaseCaco2PkRep2 Caco2 Pk 2 narrowPeak Caco-2 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 143 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Caco2 Pk 2\ subGroups view=Peaks cellType=t3CACO2 rep=rep2 treatment=None\ track wgEncodeUwDnaseCaco2PkRep2\ type narrowPeak\ pgNA12884 CEU NA12884 pgSnp CEU pedigree 1463, NA12884 (Complete Genomics) 0 143 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU pedigree 1463, NA12884 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12884\ subGroups view=C_CG id=CPed_GS12884 type=SNP\ track pgNA12884\ wgEncodeUwRepliSeqGm12813S2PctSignalRep1 GM12813 S2 1 bigWig 1.000000 100.000000 GM12813 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 143 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12813 S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12813 S2 1\ subGroups view=v1PctSignal cellType=t3GM12813 phase=p3S2 rep=rep1\ track wgEncodeUwRepliSeqGm12813S2PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF911BYP GM12878 MEF2B narrowPeak Transcription Factor ChIP-seq Peaks of MEF2B in GM12878 from ENCODE 3 (ENCFF911BYP) 1 143 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of MEF2B in GM12878 from ENCODE 3 (ENCFF911BYP)\ parent encTfChipPk off\ shortLabel GM12878 MEF2B\ subGroups cellType=GM12878 factor=MEF2B\ track encTfChipPkENCFF911BYP\ wgEncodeOpenChromDnaseGm13976Sig GM13976 DS bigWig 0.000000 1.308400 GM13976 DNaseI HS Density Signal from ENCODE/Duke 2 143 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM13976 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel GM13976 DS\ subGroups view=SIG cellType=t3GM13976 treatment=zNONE\ track wgEncodeOpenChromDnaseGm13976Sig\ type bigWig 0.000000 1.308400\ wgEncodeOpenChromChipGm19239CtcfSig GM19239 CTCF DS bigWig 0.000000 13.094600 GM19239 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 143 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM19239 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel GM19239 CTCF DS\ subGroups treatment=AANONE view=SIG factor=CTCF cellType=t3GM19239\ track wgEncodeOpenChromChipGm19239CtcfSig\ type bigWig 0.000000 13.094600\ wgEncodeUwTfbsGm12865CtcfStdHotspotsRep3 GM65 CTCF Ht 3 broadPeak GM12865 CTCF TFBS ChIP-seq Hotspots 3 from ENCODE/UW 2 143 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12865 CTCF TFBS ChIP-seq Hotspots 3 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM65 CTCF Ht 3\ subGroups view=Hot factor=CTCF cellType=t3GM12865 rep=rep3 treatment=aNone\ track wgEncodeUwTfbsGm12865CtcfStdHotspotsRep3\ type broadPeak\ wgEncodeHaibTfbsGm12878Six5Pcr1xPkRep1 GM78 SIX5 PCR1 1 broadPeak GM12878 SIX5 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 143 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 SIX5 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 SIX5 PCR1 1\ subGroups view=Peaks factor=SIX5 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Six5Pcr1xPkRep1\ type broadPeak\ wgEncodeAwgTfbsHaibH1hescTcf12Pcr1xUniPk H1-hESC TCF12 narrowPeak H1-hESC TFBS Uniform Peaks of TCF12 from ENCODE/HudsonAlpha/Analysis 1 143 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of TCF12 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC TCF12\ subGroups tier=a10 cellType=a10H1HESC factor=TCF12 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescTcf12Pcr1xUniPk\ wgEncodeSydhTfbsH1hescSuz12UcdPk H1ES SZ12 UCD narrowPeak H1-hESC SUZ12 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 143 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC SUZ12 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES SZ12 UCD\ subGroups view=Peaks factor=SUZ12 cellType=t1H1HESC control=UCD treatment=aNONE\ track wgEncodeSydhTfbsH1hescSuz12UcdPk\ type narrowPeak\ wgEncodeRikenCageHelas3NucleusPamMinusRawRep1 HeLa nucl pA- - 1 bigWig 1.000000 364791.000000 HeLa-S3 nucleus polyA- CAGE Raw signal - Rep 1 from ENCODE/RIKEN 2 143 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 nucleus polyA- CAGE Raw signal - Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HeLa nucl pA- - 1\ subGroups view=MinusRawSignal cellType=t2HELAS3 localization=nucleus rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageHelas3NucleusPamMinusRawRep1\ type bigWig 1.000000 364791.000000\ wgEncodeCshlShortRnaSeqHepg2CytosolShorttotalTapPlusRawRep2 HepG cyto TAP + 2 bigWig 1.000000 2648832.000000 HepG2 TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 143 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HepG cyto TAP + 2\ subGroups view=PlusSignal cellType=t2HEPG2 localization=CYTOSOL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHepg2CytosolShorttotalTapPlusRawRep2\ type bigWig 1.000000 2648832.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day06Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_forward 0 143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep3.CNhs13730.13357-143E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13357-143E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day06Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_forward 1 143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep3.CNhs13730.13357-143E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13357-143E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHvmfSig HVMF Sig bigWig 1.000000 47081.000000 HVMF DNaseI DGF Per-base Signal from ENCODE/UW 2 143 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HVMF DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel HVMF Sig\ subGroups view=Signal cellType=t3HVMF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHvmfSig\ type bigWig 1.000000 47081.000000\ wgEncodeCshlLongRnaSeqK562NucleoplasmTotalPlusRawSigRep4 K562 ncpm tot + 2 bigWig 1.000000 1842308.000000 K562 nucleoplasm total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 143 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleoplasm total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel K562 ncpm tot + 2\ subGroups view=PlusSignal cellType=t1K562 localization=NUCLEOPLASM rnaExtract=TOTAL rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqK562NucleoplasmTotalPlusRawSigRep4\ type bigWig 1.000000 1842308.000000\ wgEncodeBroadHistoneK562Pol2bStdPk K562 Pol2 broadPeak K562 Pol2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 143 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 Pol2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 Pol2\ subGroups view=Peaks factor=POL2 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Pol2bStdPk\ type broadPeak\ wgEncodeHaibMethylRrbsNhbeUwSitesRep2 NHBE 2 bed 9 + NHBE Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 143 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHBE Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel NHBE 2\ subGroups cellType=t3NHBE obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsNhbeUwSitesRep2\ type bed 9 +\ wgEncodeUwAffyExonArrayNhdfneoSimpleSignalRep2 NHDF-neo 2 broadPeak NHDF-neo Exon array Signal Rep 2 from ENCODE/UW 0 143 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHDF-neo Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel NHDF-neo 2\ subGroups cellType=t3NHDFNEO rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayNhdfneoSimpleSignalRep2\ type broadPeak\ wgEncodeCaltechRnaSeqNhekR2x75Il200SplicesRep1V2 NHEK 2x75 Sp 1 bam NHEK 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 143 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel NHEK 2x75 Sp 1\ subGroups view=Splices cellType=t3NHEK insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqNhekR2x75Il200SplicesRep1V2\ type bam\ wgEncodeDukeAffyExonProgfibSimpleSignalRep1V2 ProgFib 1 bigBed 6 + ProgFib Exon array Signal Rep 1 from ENCODE/Duke 0 143 0 0 0 127 127 127 1 0 0 expression 1 longLabel ProgFib Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel ProgFib 1\ subGroups cellType=t3PROGFIB treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonProgfibSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeGisRnaPetSknshNucleusPapMinusRawRep3 SKSH nucl pA+ - 3 bigWig 1.000000 1427850.000000 SK-N-SH nucleus polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS 2 143 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH nucleus polyA+ clone-free RNA PET Minus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel SKSH nucl pA+ - 3\ subGroups view=v2MinusRawSignal cellType=bSKNSH cloned=Free localization=nucleus rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetSknshNucleusPapMinusRawRep3\ type bigWig 1.000000 1427850.000000\ wgEncodeUwHistoneAg04450H3k09me3StdHotspotsRep2 AG50 H3K9me3 Ht 2 broadPeak AG04450 H3K9me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 144 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 H3K9me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel AG50 H3K9me3 Ht 2\ subGroups view=Hot factor=H3K09ME3 cellType=t3AG04450 treatment=zNone rep=rep2\ track wgEncodeUwHistoneAg04450H3k09me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseCaco2RawRep2 Caco2 Sg 2 bigWig 1.000000 13808.000000 Caco-2 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 144 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Caco-2 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Caco2 Sg 2\ subGroups view=zRSig cellType=t3CACO2 rep=rep2 treatment=None\ track wgEncodeUwDnaseCaco2RawRep2\ type bigWig 1.000000 13808.000000\ pgNA12884indel CEU NA12884 indel pgSnp CEU NA12884 indel (Complete Genomics) 0 144 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12884 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12884 indel\ subGroups view=C_CG id=CPed_GS12884 type=Indel\ track pgNA12884indel\ wgEncodeUwRepliSeqGm12813S3PctSignalRep1 GM12813 S3 1 bigWig 1.000000 100.000000 GM12813 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 144 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12813 S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12813 S3 1\ subGroups view=v1PctSignal cellType=t3GM12813 phase=p4S3 rep=rep1\ track wgEncodeUwRepliSeqGm12813S3PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF261ZWR GM12878 MEF2C narrowPeak Transcription Factor ChIP-seq Peaks of MEF2C in GM12878 from ENCODE 3 (ENCFF261ZWR) 1 144 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of MEF2C in GM12878 from ENCODE 3 (ENCFF261ZWR)\ parent encTfChipPk off\ shortLabel GM12878 MEF2C\ subGroups cellType=GM12878 factor=MEF2C\ track encTfChipPkENCFF261ZWR\ wgEncodeOpenChromDnaseGm13976BaseOverlapSignal GM13976 OS bigWig 0.000000 209.000000 GM13976 DNaseI HS Overlap Signal from ENCODE/Duke 2 144 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM13976 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel GM13976 OS\ subGroups view=SIGBO cellType=t3GM13976 treatment=zNONE\ track wgEncodeOpenChromDnaseGm13976BaseOverlapSignal\ type bigWig 0.000000 209.000000\ wgEncodeOpenChromChipGm19239CtcfBaseOverlapSignal GM19239 CTCF OS bigWig 0.000000 2555.000000 GM19239 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 144 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM19239 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel GM19239 CTCF OS\ subGroups treatment=AANONE view=SIGBO factor=CTCF cellType=t3GM19239\ track wgEncodeOpenChromChipGm19239CtcfBaseOverlapSignal\ type bigWig 0.000000 2555.000000\ wgEncodeUwTfbsGm12865CtcfStdPkRep3 GM65 CTCF Pk 3 narrowPeak GM12865 CTCF TFBS ChIP-seq Peaks 3 from ENCODE/UW 3 144 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12865 CTCF TFBS ChIP-seq Peaks 3 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM65 CTCF Pk 3\ subGroups view=Peaks factor=CTCF cellType=t3GM12865 rep=rep3 treatment=aNone\ track wgEncodeUwTfbsGm12865CtcfStdPkRep3\ type narrowPeak\ wgEncodeHaibTfbsGm12878Six5Pcr1xRawRep1 GM78 SIX5 PCR1 1 bigWig 0.171355 119.049004 GM12878 SIX5 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 144 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 SIX5 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 SIX5 PCR1 1\ subGroups view=RawSignal factor=SIX5 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Six5Pcr1xRawRep1\ type bigWig 0.171355 119.049004\ wgEncodeAwgTfbsHaibH1hescTead4sc101184V0422111UniPk H1-hESC TEAD4 narrowPeak H1-hESC TFBS Uniform Peaks of TEAD4_(SC-101184) from ENCODE/HudsonAlpha/Analysis 1 144 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of TEAD4_(SC-101184) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC TEAD4\ subGroups tier=a10 cellType=a10H1HESC factor=TEAD4 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescTead4sc101184V0422111UniPk\ wgEncodeSydhTfbsH1hescSuz12UcdSig H1ES SZ12 UCD bigWig 0.000000 16121.099609 H1-hESC SUZ12 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 144 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC SUZ12 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES SZ12 UCD\ subGroups view=Signal factor=SUZ12 cellType=t1H1HESC control=UCD treatment=aNONE\ track wgEncodeSydhTfbsH1hescSuz12UcdSig\ type bigWig 0.000000 16121.099609\ wgEncodeRikenCageHelas3NucleusPamAlnRep1 HeLa nucl pA- A 1 bam HeLa-S3 nucleus polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN 0 144 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 nucleus polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HeLa nucl pA- A 1\ subGroups view=Alignments cellType=t2HELAS3 localization=nucleus rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageHelas3NucleusPamAlnRep1\ type bam\ wgEncodeCshlShortRnaSeqHepg2NucleusShorttotalTapContigs HepG nucl TAP C bed 6 HepG2 TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL 2 144 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HepG nucl TAP C\ subGroups view=Contigs cellType=t2HEPG2 localization=NUCLEUS protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqHepg2NucleusShorttotalTapContigs\ type bed 6\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_ctss_rev Hes3-gfpCardiomyocyticInduction_Day06Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_reverse 0 144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep3.CNhs13730.13357-143E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13357-143E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_tpm_rev Hes3-gfpCardiomyocyticInduction_Day06Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_reverse 1 144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep3.CNhs13730.13357-143E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13357-143E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9\ urlLabel FANTOM5 Details:\ wgEncodeUwDgfHvmfRaw HVMF Raw bigWig 1.000000 145787.000000 HVMF DNaseI DGF Raw Signal from ENCODE/UW 0 144 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HVMF DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel HVMF Raw\ subGroups view=zRaw cellType=t3HVMF treatment=aNONE rep=rep1\ track wgEncodeUwDgfHvmfRaw\ type bigWig 1.000000 145787.000000\ wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaAlnRep1 K562 nuc pA- A 1 bam K562 nucleus polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 144 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleus polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel K562 nuc pA- A 1\ subGroups view=Alignments cellType=t1K562 localization=NUCLEUS rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaAlnRep1\ type bam\ wgEncodeBroadHistoneK562Pol2bStdSig K562 Pol2 bigWig 0.040000 16058.919922 K562 Pol2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 144 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 Pol2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 Pol2\ subGroups view=Signal factor=POL2 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Pol2bStdSig\ type bigWig 0.040000 16058.919922\ wgEncodeHaibMethylRrbsNhdfneoUwSitesRep1 NHDF-neo 1 bed 9 + NHDF-neo Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 144 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel NHDF-neo 1\ subGroups cellType=t3NHDFNEO obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsNhdfneoUwSitesRep1\ type bed 9 +\ wgEncodeUwAffyExonArrayNhekSimpleSignalRep1 NHEK 1 broadPeak NHEK Exon array Signal Rep 1 from ENCODE/UW 0 144 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel NHEK 1\ subGroups cellType=t3NHEK rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayNhekSimpleSignalRep1\ type broadPeak\ wgEncodeCaltechRnaSeqNhekR2x75Il200SplicesRep2V2 NHEK 2x75 Sp 2 bam NHEK 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 144 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel NHEK 2x75 Sp 2\ subGroups view=Splices cellType=t3NHEK insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqNhekR2x75Il200SplicesRep2V2\ type bam\ wgEncodeDukeAffyExonProgfibSimpleSignalRep2V2 ProgFib 2 bigBed 6 + ProgFib Exon array Signal Rep 2 from ENCODE/Duke 0 144 0 0 0 127 127 127 1 0 0 expression 1 longLabel ProgFib Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel ProgFib 2\ subGroups cellType=t3PROGFIB treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonProgfibSimpleSignalRep2V2\ type bigBed 6 +\ wgEncodeGisRnaPetSknshNucleusPapMinusRawRep4 SKSH nucl pA+ - 4 bigWig 1.000000 1548380.000000 SK-N-SH nucleus polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS 2 144 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH nucleus polyA+ clone-free RNA PET Minus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel SKSH nucl pA+ - 4\ subGroups view=v2MinusRawSignal cellType=bSKNSH cloned=Free localization=nucleus rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetSknshNucleusPapMinusRawRep4\ type bigWig 1.000000 1548380.000000\ wgEncodeUwHistoneAg04450H3k09me3StdPkRep2 AG50 H3K9me3 Pk 2 narrowPeak AG04450 H3K9me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 145 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 H3K9me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel AG50 H3K9me3 Pk 2\ subGroups view=Peaks factor=H3K09ME3 cellType=t3AG04450 treatment=zNone rep=rep2\ track wgEncodeUwHistoneAg04450H3k09me3StdPkRep2\ type narrowPeak\ wgEncodeUwDnaseCd4naivewb11970640HotspotsRep1 CD4 NveWb640 Ht 1 broadPeak CD4+ Naive Wb11970640 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 145 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CD4+ Naive Wb11970640 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel CD4 NveWb640 Ht 1\ subGroups view=Hot cellType=t3CD04NAIVEWB11970640 treatment=None rep=rep1\ track wgEncodeUwDnaseCd4naivewb11970640HotspotsRep1\ type broadPeak\ pgNA12885 CEU NA12885 pgSnp CEU pedigree 1463, NA12885 (Complete Genomics) 0 145 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU pedigree 1463, NA12885 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12885\ subGroups view=C_CG id=CPed_GS12885 type=SNP\ track pgNA12885\ wgEncodeUwRepliSeqGm12813S4PctSignalRep1 GM12813 S4 1 bigWig 1.000000 100.000000 GM12813 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 145 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12813 S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12813 S4 1\ subGroups view=v1PctSignal cellType=t3GM12813 phase=p5S4 rep=rep1\ track wgEncodeUwRepliSeqGm12813S4PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF881VZH GM12878 MLLT1 narrowPeak Transcription Factor ChIP-seq Peaks of MLLT1 in GM12878 from ENCODE 3 (ENCFF881VZH) 1 145 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of MLLT1 in GM12878 from ENCODE 3 (ENCFF881VZH)\ parent encTfChipPk off\ shortLabel GM12878 MLLT1\ subGroups cellType=GM12878 factor=MLLT1\ track encTfChipPkENCFF881VZH\ wgEncodeOpenChromDnaseGm13977Pk GM13977 Pk narrowPeak GM13977 DNaseI HS Peaks from ENCODE/Duke 3 145 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM13977 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel GM13977 Pk\ subGroups view=Peaks cellType=t3GM13977 treatment=zNONE\ track wgEncodeOpenChromDnaseGm13977Pk\ type narrowPeak\ wgEncodeOpenChromChipGm19240CtcfPk GM19240 CTCF Pk narrowPeak GM19240 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 145 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM19240 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel GM19240 CTCF Pk\ subGroups treatment=AANONE view=Peaks factor=CTCF cellType=t3GM19240\ track wgEncodeOpenChromChipGm19240CtcfPk\ type narrowPeak\ wgEncodeUwTfbsGm12865CtcfStdRawRep3 GM65 CTCF Sg 3 bigWig 1.000000 9191.000000 GM12865 CTCF TFBS ChIP-seq Raw Signal 3 from ENCODE/UW 2 145 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12865 CTCF TFBS ChIP-seq Raw Signal 3 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM65 CTCF Sg 3\ subGroups view=zRSig factor=CTCF cellType=t3GM12865 rep=rep3 treatment=aNone\ track wgEncodeUwTfbsGm12865CtcfStdRawRep3\ type bigWig 1.000000 9191.000000\ wgEncodeHaibTfbsGm12878Six5Pcr1xPkRep2 GM78 SIX5 PCR1 2 broadPeak GM12878 SIX5 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 145 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 SIX5 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 SIX5 PCR1 2\ subGroups view=Peaks factor=SIX5 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Six5Pcr1xPkRep2\ type broadPeak\ wgEncodeAwgTfbsHaibH1hescUsf1Pcr1xUniPk H1-hESC USF1 narrowPeak H1-hESC TFBS Uniform Peaks of USF-1 from ENCODE/HudsonAlpha/Analysis 1 145 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of USF-1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC USF1\ subGroups tier=a10 cellType=a10H1HESC factor=USF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescUsf1Pcr1xUniPk\ wgEncodeSydhTfbsH1hescTbpIggrabPk H1ES TBP IgR narrowPeak H1-hESC TBP IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 145 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TBP IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES TBP IgR\ subGroups view=Peaks factor=TBP cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescTbpIggrabPk\ type narrowPeak\ wgEncodeRikenCageHelas3NucleusPapTssHmm HeLa nucl pA+ bed 6 HeLa-S3 nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 145 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HeLa nucl pA+\ subGroups view=TssHmm cellType=t2HELAS3 localization=nucleus rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHelas3NucleusPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqHepg2NucleusShorttotalTapMinusRawRep1 HepG nucl TAP - 1 bigWig 1.000000 2034826.000000 HepG2 TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 145 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HepG nucl TAP - 1\ subGroups view=MinusSignal cellType=t2HEPG2 localization=NUCLEUS protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHepg2NucleusShorttotalTapMinusRawRep1\ type bigWig 1.000000 2034826.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day07Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_forward 0 145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep2.CNhs13719.13346-143D7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13346-143D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day07Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_forward 1 145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep2.CNhs13719.13346-143D7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13346-143D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaAlnRep2 K562 nuc pA- A 2 bam K562 nucleus polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 145 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleus polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel K562 nuc pA- A 2\ subGroups view=Alignments cellType=t1K562 localization=NUCLEUS rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaAlnRep2\ type bam\ wgEncodeBroadHistoneK562Rbbp5a300109aStdPk K562 RBBP5 broadPeak K562 RBBP5 (A300-109A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 145 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 RBBP5 (A300-109A) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 RBBP5\ subGroups view=Peaks factor=RBBP5A300109A cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Rbbp5a300109aStdPk\ type broadPeak\ wgEncodeUwDgfM059jHotspots M059J Hot broadPeak M059J DNaseI DGF Hotspots from ENCODE/UW 0 145 0 0 0 127 127 127 0 0 0 regulation 1 longLabel M059J DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel M059J Hot\ subGroups view=Hotspots cellType=t3M059J treatment=aNONE rep=rep1\ track wgEncodeUwDgfM059jHotspots\ type broadPeak\ wgEncodeHaibMethylRrbsNhdfneoUwSitesRep2 NHDF-neo 2 bed 9 + NHDF-neo Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 145 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel NHDF-neo 2\ subGroups cellType=t3NHDFNEO obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsNhdfneoUwSitesRep2\ type bed 9 +\ wgEncodeCaltechRnaSeqNhekR1x75dAlignsRep1V2 NHEK 1x75D A 1 bam NHEK single read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 145 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK single read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel NHEK 1x75D A 1\ subGroups view=Aligns cellType=t3NHEK insertLength=ilNa readType=r1x75D rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqNhekR1x75dAlignsRep1V2\ type bam\ wgEncodeUwAffyExonArrayNhlfSimpleSignalRep1 NHLF 1 broadPeak NHLF Exon array Signal Rep 1 from ENCODE/UW 0 145 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHLF Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel NHLF 1\ subGroups cellType=t3NHLF rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayNhlfSimpleSignalRep1\ type broadPeak\ wgEncodeGisRnaPetSknshNucleusPapPlusRawRep3 SKSH nucl pA+ + 3 bigWig 1.000000 1209900.000000 SK-N-SH nucleus polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS 2 145 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH nucleus polyA+ clone-free RNA PET Plus signal Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel SKSH nucl pA+ + 3\ subGroups view=v2PlusRawSignal cellType=bSKNSH cloned=Free localization=nucleus rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetSknshNucleusPapPlusRawRep3\ type bigWig 1.000000 1209900.000000\ wgEncodeDukeAffyExonStellateSimpleSignalRep1V2 Stellate 1 bigBed 6 + Stellate Exon array Signal Rep 1 from ENCODE/Duke 0 145 0 0 0 127 127 127 1 0 0 expression 1 longLabel Stellate Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Stellate 1\ subGroups cellType=t3STELLATE treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonStellateSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeUwHistoneAg04450H3k09me3StdRawRep2 AG50 H3K9m3 Raw 2 bigWig 1.000000 21112.000000 AG04450 H3K9me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 146 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04450 H3K9me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG50 H3K9m3 Raw 2\ subGroups view=zRSig factor=H3K09ME3 cellType=t3AG04450 treatment=zNone rep=rep2\ track wgEncodeUwHistoneAg04450H3k09me3StdRawRep2\ type bigWig 1.000000 21112.000000\ wgEncodeUwDnaseCd4naivewb11970640PkRep1 CD4 NveWb640 Pk 1 narrowPeak CD4+ Naive Wb11970640 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 146 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CD4+ Naive Wb11970640 DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel CD4 NveWb640 Pk 1\ subGroups view=Peaks cellType=t3CD04NAIVEWB11970640 treatment=None rep=rep1\ track wgEncodeUwDnaseCd4naivewb11970640PkRep1\ type narrowPeak\ pgNA12885indel CEU NA12885 indel pgSnp CEU NA12885 indel (Complete Genomics) 0 146 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12885 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12885 indel\ subGroups view=C_CG id=CPed_GS12885 type=Indel\ track pgNA12885indel\ wgEncodeUwRepliSeqGm12813G2PctSignalRep1 GM12813 G2 1 bigWig 1.000000 100.000000 GM12813 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 146 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12813 G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel GM12813 G2 1\ subGroups view=v1PctSignal cellType=t3GM12813 phase=p6G2 rep=rep1\ track wgEncodeUwRepliSeqGm12813G2PctSignalRep1\ type bigWig 1.000000 100.000000\ encTfChipPkENCFF966RPL GM12878 MTA2 narrowPeak Transcription Factor ChIP-seq Peaks of MTA2 in GM12878 from ENCODE 3 (ENCFF966RPL) 1 146 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of MTA2 in GM12878 from ENCODE 3 (ENCFF966RPL)\ parent encTfChipPk off\ shortLabel GM12878 MTA2\ subGroups cellType=GM12878 factor=MTA2\ track encTfChipPkENCFF966RPL\ wgEncodeOpenChromDnaseGm13977Sig GM13977 DS bigWig 0.000000 1.382800 GM13977 DNaseI HS Density Signal from ENCODE/Duke 2 146 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM13977 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel GM13977 DS\ subGroups view=SIG cellType=t3GM13977 treatment=zNONE\ track wgEncodeOpenChromDnaseGm13977Sig\ type bigWig 0.000000 1.382800\ wgEncodeOpenChromChipGm19240CtcfSig GM19240 CTCF DS bigWig 0.000000 16.539000 GM19240 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 146 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM19240 CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel GM19240 CTCF DS\ subGroups treatment=AANONE view=SIG factor=CTCF cellType=t3GM19240\ track wgEncodeOpenChromChipGm19240CtcfSig\ type bigWig 0.000000 16.539000\ wgEncodeUwTfbsGm12865InputStdRawRep1 GM65 In Sg 1 bigWig 1.000000 9831.000000 GM12865 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 146 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12865 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM65 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3GM12865 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12865InputStdRawRep1\ type bigWig 1.000000 9831.000000\ wgEncodeHaibTfbsGm12878Six5Pcr1xRawRep2 GM78 SIX5 PCR1 2 bigWig 0.147250 164.367996 GM12878 SIX5 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 146 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 SIX5 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 SIX5 PCR1 2\ subGroups view=RawSignal factor=SIX5 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Six5Pcr1xRawRep2\ type bigWig 0.147250 164.367996\ wgEncodeAwgTfbsSydhH1hescUsf2IggrabUniPk H1-hESC USF2 narrowPeak H1-hESC TFBS Uniform Peaks of USF2 from ENCODE/Stanford/Analysis 1 146 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of USF2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC USF2\ subGroups tier=a10 cellType=a10H1HESC factor=USF2 lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescUsf2IggrabUniPk\ wgEncodeSydhTfbsH1hescTbpIggrabSig H1ES TBP IgR bigWig 1.000000 116756.000000 H1-hESC TBP IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 146 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC TBP IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES TBP IgR\ subGroups view=Signal factor=TBP cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescTbpIggrabSig\ type bigWig 1.000000 116756.000000\ wgEncodeRikenCageHelas3NucleusPapPlusSignalRep1 HeLa nucl pA+ + 1 bigWig 0.070000 45852.261719 HeLa-S3 nucleus polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 146 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HeLa nucl pA+ + 1\ subGroups view=PlusRawSignal cellType=t2HELAS3 localization=nucleus rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHelas3NucleusPapPlusSignalRep1\ type bigWig 0.070000 45852.261719\ wgEncodeCshlShortRnaSeqHepg2NucleusShorttotalTapMinusRawRep2 HepG nucl TAP - 2 bigWig 1.000000 1892864.000000 HepG2 TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 146 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HepG nucl TAP - 2\ subGroups view=MinusSignal cellType=t2HEPG2 localization=NUCLEUS protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHepg2NucleusShorttotalTapMinusRawRep2\ type bigWig 1.000000 1892864.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_ctss_rev Hes3-gfpCardiomyocyticInduction_Day07Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_reverse 0 146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep2.CNhs13719.13346-143D7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13346-143D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_tpm_rev Hes3-gfpCardiomyocyticInduction_Day07Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_reverse 1 146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep2.CNhs13719.13346-143D7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13346-143D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqK562NucleusPamContigs K562 nuc pA- C bed 6 + K562 nucleus polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 146 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleus polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel K562 nuc pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1K562 localization=NUCLEUS rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqK562NucleusPamContigs\ type bed 6 +\ wgEncodeBroadHistoneK562Rbbp5a300109aStdSig K562 RBBP5 bigWig 0.040000 26107.199219 K562 RBBP5 (A300-109A) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 146 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 RBBP5 (A300-109A) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 RBBP5\ subGroups view=Signal factor=RBBP5A300109A cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Rbbp5a300109aStdSig\ type bigWig 0.040000 26107.199219\ wgEncodeUwDgfM059jPk M059J Pk narrowPeak M059J DNaseI DGF Peaks from ENCODE/UW 0 146 0 0 0 127 127 127 0 0 0 regulation 1 longLabel M059J DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel M059J Pk\ subGroups view=Peaks cellType=t3M059J treatment=aNONE rep=rep1\ track wgEncodeUwDgfM059jPk\ type narrowPeak\ wgEncodeCaltechRnaSeqNhekR1x75dTh1014UMinusRawRep1V4 NHEK 1x75D - 1 bigWig -132223.500000 -0.025000 NHEK single read RNA-seq Minus Signal Rep 1 from ENCODE/Caltech 2 146 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK single read RNA-seq Minus Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewMinusSignal off\ shortLabel NHEK 1x75D - 1\ subGroups view=MinusSignal cellType=t3NHEK readType=r1x75D insertLength=ilNa rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqNhekR1x75dTh1014UMinusRawRep1V4\ type bigWig -132223.500000 -0.025000\ wgEncodeUwAffyExonArrayNhlfSimpleSignalRep2 NHLF 2 broadPeak NHLF Exon array Signal Rep 2 from ENCODE/UW 0 146 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHLF Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel NHLF 2\ subGroups cellType=t3NHLF rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayNhlfSimpleSignalRep2\ type broadPeak\ wgEncodeHaibMethylRrbsNt2d1StanfordSitesRep1 NT2-D1 1 bed 9 + NT2-D1 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 146 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2-D1 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel NT2-D1 1\ subGroups cellType=t3NT2D1 obtainedBy=Stanford treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsNt2d1StanfordSitesRep1\ type bed 9 +\ wgEncodeGisRnaPetSknshNucleusPapPlusRawRep4 SKSH nucl pA+ + 4 bigWig 1.000000 1295800.000000 SK-N-SH nucleus polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS 2 146 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH nucleus polyA+ clone-free RNA PET Plus signal Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel SKSH nucl pA+ + 4\ subGroups view=v2PlusRawSignal cellType=bSKNSH cloned=Free localization=nucleus rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetSknshNucleusPapPlusRawRep4\ type bigWig 1.000000 1295800.000000\ wgEncodeDukeAffyExonStellateSimpleSignalRep2 Stellate 2 bigBed 6 + Stellate Exon array Signal Rep 2 from ENCODE/Duke 0 146 0 0 0 127 127 127 1 0 0 expression 1 longLabel Stellate Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Stellate 2\ subGroups cellType=t3STELLATE treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonStellateSimpleSignalRep2\ type bigBed 6 +\ wgEncodeUwHistoneAg04450H3k27acStdHotspotsRep1 AG50 H3K27ac Ht 1 broadPeak AG04450 H3K27ac Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 147 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 H3K27ac Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel AG50 H3K27ac Ht 1\ subGroups view=Hot factor=H3K27AC cellType=t3AG04450 treatment=zNone rep=rep1\ track wgEncodeUwHistoneAg04450H3k27acStdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseCd4naivewb11970640RawRep1 CD4 NveWb640 Sg 1 bigWig 1.000000 18598.000000 CD4+ Naive Wb11970640 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 147 0 0 0 127 127 127 0 0 0 regulation 0 longLabel CD4+ Naive Wb11970640 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel CD4 NveWb640 Sg 1\ subGroups view=zRSig cellType=t3CD04NAIVEWB11970640 treatment=None rep=rep1\ track wgEncodeUwDnaseCd4naivewb11970640RawRep1\ type bigWig 1.000000 18598.000000\ pgNA12886 CEU NA12886 pgSnp CEU pedigree 1463, NA12886 (Complete Genomics) 0 147 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU pedigree 1463, NA12886 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12886\ subGroups view=C_CG id=CPed_GS12886 type=SNP\ track pgNA12886\ wgEncodeUwRepliSeqGm12813PkRep1 GM12813 Pk 1 bed 9 GM12813 Repli-seq Peaks Rep 1 from ENCODE/UW 0 147 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM12813 Repli-seq Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPeaks off\ shortLabel GM12813 Pk 1\ subGroups view=v2Peaks cellType=t3GM12813 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm12813PkRep1\ type bed 9\ encTfChipPkENCFF413VUC GM12878 MTA3 narrowPeak Transcription Factor ChIP-seq Peaks of MTA3 in GM12878 from ENCODE 3 (ENCFF413VUC) 1 147 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of MTA3 in GM12878 from ENCODE 3 (ENCFF413VUC)\ parent encTfChipPk off\ shortLabel GM12878 MTA3\ subGroups cellType=GM12878 factor=MTA3\ track encTfChipPkENCFF413VUC\ wgEncodeOpenChromDnaseGm13977BaseOverlapSignal GM13977 OS bigWig 0.000000 242.000000 GM13977 DNaseI HS Overlap Signal from ENCODE/Duke 2 147 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM13977 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel GM13977 OS\ subGroups view=SIGBO cellType=t3GM13977 treatment=zNONE\ track wgEncodeOpenChromDnaseGm13977BaseOverlapSignal\ type bigWig 0.000000 242.000000\ wgEncodeOpenChromChipGm19240CtcfBaseOverlapSignal GM19240 CTCF OS bigWig 0.000000 3688.000000 GM19240 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 147 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM19240 CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel GM19240 CTCF OS\ subGroups treatment=AANONE view=SIGBO factor=CTCF cellType=t3GM19240\ track wgEncodeOpenChromChipGm19240CtcfBaseOverlapSignal\ type bigWig 0.000000 3688.000000\ wgEncodeUwTfbsGm12872CtcfStdHotspotsRep1 GM72 CTCF Ht 1 broadPeak GM12872 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 147 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12872 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM72 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3GM12872 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12872CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsGm12878Sp1Pcr1xPkRep1 GM78 SP1 PCR1 1 broadPeak GM12878 SP1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 147 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 SP1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 SP1 PCR1 1\ subGroups view=Peaks factor=SP1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Sp1Pcr1xPkRep1\ type broadPeak\ wgEncodeAwgTfbsHaibH1hescYy1sc281V0416102UniPk H1-hESC YY1 narrowPeak H1-hESC TFBS Uniform Peaks of YY1_(SC-281) from ENCODE/HudsonAlpha/Analysis 1 147 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of YY1_(SC-281) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC YY1\ subGroups tier=a10 cellType=a10H1HESC factor=YY1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibH1hescYy1sc281V0416102UniPk\ wgEncodeSydhTfbsH1hescUsf2IggrabPk H1ES USF2 IgR narrowPeak H1-hESC USF2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 147 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC USF2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES USF2 IgR\ subGroups view=Peaks factor=USF2 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescUsf2IggrabPk\ type narrowPeak\ wgEncodeRikenCageHelas3NucleusPapPlusSignalRep2 HeLa nucl pA+ + 2 bigWig 0.050000 54571.789062 HeLa-S3 nucleus polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 147 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HeLa nucl pA+ + 2\ subGroups view=PlusRawSignal cellType=t2HELAS3 localization=nucleus rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHelas3NucleusPapPlusSignalRep2\ type bigWig 0.050000 54571.789062\ wgEncodeCshlShortRnaSeqHepg2NucleusShorttotalTapPlusRawRep1 HepG nucl TAP + 1 bigWig 1.000000 3043157.000000 HepG2 TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 147 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HepG nucl TAP + 1\ subGroups view=PlusSignal cellType=t2HEPG2 localization=NUCLEUS protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHepg2NucleusShorttotalTapPlusRawRep1\ type bigWig 1.000000 3043157.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day07Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_forward 0 147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep3.CNhs13731.13358-143F1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13358-143F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day07Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_forward 1 147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep3.CNhs13731.13358-143F1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13358-143F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqK562NucleusPamJunctions K562 nuc pA- J bed 6 + K562 nucleus polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 147 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleus polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel K562 nuc pA- J\ subGroups view=Junctions cellType=t1K562 localization=NUCLEUS rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqK562NucleusPamJunctions\ type bed 6 +\ wgEncodeBroadHistoneK562RestPk K562 REST broadPeak K562 REST Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 147 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 REST Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 REST\ subGroups view=Peaks factor=REST cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562RestPk\ type broadPeak\ wgEncodeUwDgfM059jSig M059J Sig bigWig 1.000000 19308.000000 M059J DNaseI DGF Per-base Signal from ENCODE/UW 2 147 0 0 0 127 127 127 0 0 0 regulation 0 longLabel M059J DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel M059J Sig\ subGroups view=Signal cellType=t3M059J treatment=aNONE rep=rep1\ track wgEncodeUwDgfM059jSig\ type bigWig 1.000000 19308.000000\ wgEncodeCaltechRnaSeqNhekR1x75dTh1014UPlusRawRep1V4 NHEK 1x75D + 1 bigWig 0.025000 263553.000000 NHEK single read RNA-seq Plus Signal Rep 1 from ENCODE/Caltech 2 147 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK single read RNA-seq Plus Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewPlusSignal off\ shortLabel NHEK 1x75D + 1\ subGroups view=PlusSignal cellType=t3NHEK readType=r1x75D insertLength=ilNa rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqNhekR1x75dTh1014UPlusRawRep1V4\ type bigWig 0.025000 263553.000000\ wgEncodeUwAffyExonArrayNt2d1SimpleSignalRep1 NT2-D1 1 broadPeak NT2-D1 Exon-array Signal Rep 1 from ENCODE/UW 0 147 0 0 0 127 127 127 0 0 0 expression 1 longLabel NT2-D1 Exon-array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel NT2-D1 1\ subGroups cellType=t3NT2D1 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayNt2d1SimpleSignalRep1\ type broadPeak\ wgEncodeHaibMethylRrbsNt2d1StanfordSitesRep2 NT2-D1 2 bed 9 + NT2-D1 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 147 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2-D1 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel NT2-D1 2\ subGroups cellType=t3NT2D1 obtainedBy=Stanford treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsNt2d1StanfordSitesRep2\ type bed 9 +\ wgEncodeGisRnaPetSknshNucleusPapAlnRep3 SKSH nucl pA+ A 3 bam SK-N-SH nucleus polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS 0 147 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH nucleus polyA+ clone-free RNA PET Alignments Rep 3 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel SKSH nucl pA+ A 3\ subGroups view=v3Alignments cellType=bSKNSH cloned=Free localization=nucleus rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeGisRnaPetSknshNucleusPapAlnRep3\ type bam\ wgEncodeDukeAffyExonUch1SimpleSignalRep1 UCH-1 1 bigBed 6 + UCH-1 Exon array Signal Rep 1 from ENCODE/Duke 0 147 0 0 0 127 127 127 1 0 0 expression 1 longLabel UCH-1 Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel UCH-1 1\ subGroups cellType=t3UCH1 treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonUch1SimpleSignalRep1\ type bigBed 6 +\ wgEncodeUwHistoneAg04450H3k27acStdPkRep1 AG50 H3K27ac Pk 1 narrowPeak AG04450 H3K27ac Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 148 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 H3K27ac Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel AG50 H3K27ac Pk 1\ subGroups view=Peaks factor=H3K27AC cellType=t3AG04450 treatment=zNone rep=rep1\ track wgEncodeUwHistoneAg04450H3k27acStdPkRep1\ type narrowPeak\ wgEncodeUwDnaseCd4naivewb78495824HotspotsRep1 CD4 NveWb824 Ht 1 broadPeak CD4+ Naive Wb78495824 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 148 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CD4+ Naive Wb78495824 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel CD4 NveWb824 Ht 1\ subGroups view=Hot cellType=t3CD04NAIVEWB78495824 treatment=None rep=rep1\ track wgEncodeUwDnaseCd4naivewb78495824HotspotsRep1\ type broadPeak\ pgNA12886indel CEU NA12886 indel pgSnp CEU NA12886 indel (Complete Genomics) 0 148 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12886 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12886 indel\ subGroups view=C_CG id=CPed_GS12886 type=Indel\ track pgNA12886indel\ wgEncodeUwRepliSeqGm12813ValleysRep1 GM12813 Vly 1 bed 9 GM12813 Repli-seq Valleys Rep 1 from ENCODE/UW 0 148 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM12813 Repli-seq Valleys Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewValleys off\ shortLabel GM12813 Vly 1\ subGroups view=v3Valleys cellType=t3GM12813 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm12813ValleysRep1\ type bed 9\ encTfChipPkENCFF079ZWK GM12878 MXI1 narrowPeak Transcription Factor ChIP-seq Peaks of MXI1 in GM12878 from ENCODE 3 (ENCFF079ZWK) 1 148 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of MXI1 in GM12878 from ENCODE 3 (ENCFF079ZWK)\ parent encTfChipPk off\ shortLabel GM12878 MXI1\ subGroups cellType=GM12878 factor=MXI1\ track encTfChipPkENCFF079ZWK\ wgEncodeOpenChromDnaseGm18507Pk GM18507 Pk narrowPeak GM18507 DNaseI HS Peaks from ENCODE/Duke 3 148 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM18507 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel GM18507 Pk\ subGroups view=Peaks cellType=t3GM18507 treatment=zNONE\ track wgEncodeOpenChromDnaseGm18507Pk\ type narrowPeak\ wgEncodeOpenChromChipGm20000CtcfPkRep1 GM20000 CTCF Pk narrowPeak GM20000 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 148 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM20000 CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel GM20000 CTCF Pk\ subGroups view=Peaks factor=CTCF cellType=t3GM20000 treatment=AANONE\ track wgEncodeOpenChromChipGm20000CtcfPkRep1\ type narrowPeak\ wgEncodeUwTfbsGm12872CtcfStdPkRep1 GM72 CTCF Pk 1 narrowPeak GM12872 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 148 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12872 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM72 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3GM12872 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12872CtcfStdPkRep1\ type narrowPeak\ wgEncodeHaibTfbsGm12878Sp1Pcr1xRawRep1 GM78 SP1 PCR1 1 bigWig 0.104618 140.082993 GM12878 SP1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 148 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 SP1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 SP1 PCR1 1\ subGroups view=RawSignal factor=SP1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Sp1Pcr1xRawRep1\ type bigWig 0.104618 140.082993\ wgEncodeAwgTfbsSydhH1hescZnf143IggrabUniPk H1-hESC ZNF143 narrowPeak H1-hESC TFBS Uniform Peaks of Znf143_(16618-1-AP) from ENCODE/Stanford/Analysis 1 148 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TFBS Uniform Peaks of Znf143_(16618-1-AP) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel H1-hESC ZNF143\ subGroups tier=a10 cellType=a10H1HESC factor=ZNF143 lab=Stanford\ track wgEncodeAwgTfbsSydhH1hescZnf143IggrabUniPk\ wgEncodeSydhTfbsH1hescUsf2IggrabSig H1ES USF2 IgR bigWig 1.000000 17257.000000 H1-hESC USF2 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 148 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC USF2 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES USF2 IgR\ subGroups view=Signal factor=USF2 cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescUsf2IggrabSig\ type bigWig 1.000000 17257.000000\ wgEncodeRikenCageHelas3NucleusPapMinusSignalRep1 HeLa nucl pA+ - 1 bigWig 0.070000 8482.209961 HeLa-S3 nucleus polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 148 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HeLa nucl pA+ - 1\ subGroups view=MinusRawSignal cellType=t2HELAS3 localization=nucleus rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHelas3NucleusPapMinusSignalRep1\ type bigWig 0.070000 8482.209961\ wgEncodeCshlShortRnaSeqHepg2NucleusShorttotalTapPlusRawRep2 HepG nucl TAP + 2 bigWig 1.000000 2960901.000000 HepG2 TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 148 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HepG nucl TAP + 2\ subGroups view=PlusSignal cellType=t2HEPG2 localization=NUCLEUS protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHepg2NucleusShorttotalTapPlusRawRep2\ type bigWig 1.000000 2960901.000000\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_ctss_rev Hes3-gfpCardiomyocyticInduction_Day07Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_reverse 0 148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep3.CNhs13731.13358-143F1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13358-143F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_tpm_rev Hes3-gfpCardiomyocyticInduction_Day07Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_reverse 1 148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep3.CNhs13731.13358-143F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13358-143F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaMinusRawSigRep1 K562 nuc pA- - 1 bigWig 1.000000 5740841.000000 K562 nucleus polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 148 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleus polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel K562 nuc pA- - 1\ subGroups view=MinusSignal cellType=t1K562 localization=NUCLEUS rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 5740841.000000\ wgEncodeBroadHistoneK562RestSig K562 REST bigWig 0.040000 394.920013 K562 REST Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 148 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 REST Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 REST\ subGroups view=Signal factor=REST cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562RestSig\ type bigWig 0.040000 394.920013\ wgEncodeUwDgfM059jRaw M059J Raw bigWig 1.000000 196777.000000 M059J DNaseI DGF Raw Signal from ENCODE/UW 0 148 0 0 0 127 127 127 0 0 0 regulation 0 longLabel M059J DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel M059J Raw\ subGroups view=zRaw cellType=t3M059J treatment=aNONE rep=rep1\ track wgEncodeUwDgfM059jRaw\ type bigWig 1.000000 196777.000000\ wgEncodeCaltechRnaSeqNhekR1x75dSplicesRep1V2 NHEK 1x75D Sp 1 bam NHEK single read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 148 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK single read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel NHEK 1x75D Sp 1\ subGroups view=Splices cellType=t3NHEK insertLength=ilNa readType=r1x75D rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqNhekR1x75dSplicesRep1V2\ type bam\ wgEncodeUwAffyExonArrayNt2d1SimpleSignalRep2 NT2-D1 2 broadPeak NT2-D1 Exon-array Signal Rep 2 from ENCODE/UW 0 148 0 0 0 127 127 127 0 0 0 expression 1 longLabel NT2-D1 Exon-array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel NT2-D1 2\ subGroups cellType=t3NT2D1 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayNt2d1SimpleSignalRep2\ type broadPeak\ wgEncodeHaibMethylRrbsOsteoblDukeSitesRep1 Osteobl 1 bed 9 + Osteoblasts Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 148 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Osteoblasts Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Osteobl 1\ subGroups cellType=t3OSTEOBLASTS obtainedBy=DUKE treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsOsteoblDukeSitesRep1\ type bed 9 +\ wgEncodeGisRnaPetSknshNucleusPapAlnRep4 SKSH nucl pA+ A 4 bam SK-N-SH nucleus polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS 0 148 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH nucleus polyA+ clone-free RNA PET Alignments Rep 4 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel SKSH nucl pA+ A 4\ subGroups view=v3Alignments cellType=bSKNSH cloned=Free localization=nucleus rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeGisRnaPetSknshNucleusPapAlnRep4\ type bam\ wgEncodeDukeAffyExonUch1SimpleSignalRep2 UCH-1 2 bigBed 6 + UCH-1 Exon array Signal Rep 2 from ENCODE/Duke 0 148 0 0 0 127 127 127 1 0 0 expression 1 longLabel UCH-1 Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel UCH-1 2\ subGroups cellType=t3UCH1 treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonUch1SimpleSignalRep2\ type bigBed 6 +\ wgEncodeUwHistoneAg04450H3k27acStdRawRep1 AG50 H3K27ac Rw 1 bigWig 1.000000 6453.000000 AG04450 H3K27ac Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 149 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04450 H3K27ac Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG50 H3K27ac Rw 1\ subGroups view=zRSig factor=H3K27AC cellType=t3AG04450 treatment=zNone rep=rep1\ track wgEncodeUwHistoneAg04450H3k27acStdRawRep1\ type bigWig 1.000000 6453.000000\ wgEncodeUwDnaseCd4naivewb78495824PkRep1 CD4 NveWb824 Pk 1 narrowPeak CD4+ Naive Wb78495824 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 149 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CD4+ Naive Wb78495824 DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel CD4 NveWb824 Pk 1\ subGroups view=Peaks cellType=t3CD04NAIVEWB78495824 treatment=None rep=rep1\ track wgEncodeUwDnaseCd4naivewb78495824PkRep1\ type narrowPeak\ pgNA12887 CEU NA12887 pgSnp CEU pedigree 1463, NA12887 (Complete Genomics) 0 149 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU pedigree 1463, NA12887 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12887\ subGroups view=C_CG id=CPed_GS12887 type=SNP\ track pgNA12887\ wgEncodeUwRepliSeqGm12813WaveSignalRep1 GM12813 Ws 1 bigWig -4.763633 79.900345 GM12813 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW 2 149 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12813 Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewWaveSignal off\ shortLabel GM12813 Ws 1\ subGroups view=v4WaveSignal cellType=t3GM12813 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm12813WaveSignalRep1\ type bigWig -4.763633 79.900345\ encTfChipPkENCFF215YWS GM12878 MYB narrowPeak Transcription Factor ChIP-seq Peaks of MYB in GM12878 from ENCODE 3 (ENCFF215YWS) 1 149 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of MYB in GM12878 from ENCODE 3 (ENCFF215YWS)\ parent encTfChipPk off\ shortLabel GM12878 MYB\ subGroups cellType=GM12878 factor=MYB\ track encTfChipPkENCFF215YWS\ wgEncodeOpenChromDnaseGm18507Sig GM18507 DS bigWig 0.000000 1.676800 GM18507 DNaseI HS Density Signal from ENCODE/Duke 2 149 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM18507 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel GM18507 DS\ subGroups view=SIG cellType=t3GM18507 treatment=zNONE\ track wgEncodeOpenChromDnaseGm18507Sig\ type bigWig 0.000000 1.676800\ wgEncodeOpenChromChipGm20000CtcfSigRep1 GM20000 CTCF DS bigWig 0.000000 3.008500 GM20000 CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 149 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM20000 CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel GM20000 CTCF DS\ subGroups view=SIG factor=CTCF cellType=t3GM20000 treatment=AANONE\ track wgEncodeOpenChromChipGm20000CtcfSigRep1\ type bigWig 0.000000 3.008500\ wgEncodeUwTfbsGm12872CtcfStdRawRep1 GM72 CTCF Sg 1 bigWig 1.000000 4091.000000 GM12872 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 149 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12872 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM72 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3GM12872 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12872CtcfStdRawRep1\ type bigWig 1.000000 4091.000000\ wgEncodeHaibTfbsGm12878Sp1Pcr1xPkRep2 GM78 SP1 PCR1 2 broadPeak GM12878 SP1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 149 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 SP1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 SP1 PCR1 2\ subGroups view=Peaks factor=SP1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Sp1Pcr1xPkRep2\ type broadPeak\ wgEncodeSydhTfbsH1hescZnf143IggrabPk H1ES Z143 IgR narrowPeak H1-hESC Znf143 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 149 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Znf143 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES Z143 IgR\ subGroups view=Peaks factor=ZNF143166181AP cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescZnf143IggrabPk\ type narrowPeak\ wgEncodeRikenCageHelas3NucleusPapMinusSignalRep2 HeLa nucl pA+ - 2 bigWig 0.050000 14537.650391 HeLa-S3 nucleus polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 149 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HeLa nucl pA+ - 2\ subGroups view=MinusRawSignal cellType=t2HELAS3 localization=nucleus rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHelas3NucleusPapMinusSignalRep2\ type bigWig 0.050000 14537.650391\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day08Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_forward 0 149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep1.CNhs13660.13335-143C5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13335-143C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day08Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_forward 1 149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep1.CNhs13660.13335-143C5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13335-143C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalTapContigs HUVE nucl TAP C bed 6 HUVEC TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL 2 149 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HUVE nucl TAP C\ subGroups view=Contigs cellType=t2HUVEC localization=NUCLEUS protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalTapContigs\ type bed 6\ wgEncodeAwgTfbsSydhK562Arid3asc8821IggrabUniPk K562 ARID3A narrowPeak K562 TFBS Uniform Peaks of ARID3A_(sc-8821) from ENCODE/Stanford/Analysis 1 149 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of ARID3A_(sc-8821) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 ARID3A\ subGroups tier=a10 cellType=a10K562 factor=ARID3A lab=Stanford\ track wgEncodeAwgTfbsSydhK562Arid3asc8821IggrabUniPk\ wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaMinusRawSigRep2 K562 nuc pA- - 2 bigWig 1.000000 5175165.000000 K562 nucleus polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 149 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleus polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel K562 nuc pA- - 2\ subGroups view=MinusSignal cellType=t1K562 localization=NUCLEUS rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 5175165.000000\ wgEncodeBroadHistoneK562Rnf2Pk K562 RNF2 broadPeak K562 RNF2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 149 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 RNF2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 RNF2\ subGroups view=Peaks factor=RNF2 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Rnf2Pk\ type broadPeak\ wgEncodeUwDgfNb4Hotspots NB4 Hot broadPeak NB4 DNaseI DGF Hotspots from ENCODE/UW 0 149 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel NB4 Hot\ subGroups view=Hotspots cellType=t3NB4 treatment=aNONE rep=rep1\ track wgEncodeUwDgfNb4Hotspots\ type broadPeak\ wgEncodeGisRnaPetNhekCytosolPapClustersRep1 NHEK cyto pA+ 1 bed 6 + NHEK cytosol polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS 2 149 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK cytosol polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel NHEK cyto pA+ 1\ subGroups view=v1Clusters cellType=cNHEK cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetNhekCytosolPapClustersRep1\ type bed 6 +\ wgEncodeCaltechRnaSeqNhlfR2x75Il200AlignsRep1V2 NHLF 2x75 A 1 bam NHLF 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech 0 149 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHLF 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel NHLF 2x75 A 1\ subGroups view=Aligns cellType=t3NHLF insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqNhlfR2x75Il200AlignsRep1V2\ type bam\ wgEncodeHaibMethylRrbsOsteoblDukeSitesRep2 Osteobl 2 bed 9 + Osteoblasts Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 149 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Osteoblasts Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Osteobl 2\ subGroups cellType=t3OSTEOBLASTS obtainedBy=DUKE treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsOsteoblDukeSitesRep2\ type bed 9 +\ wgEncodeUwAffyExonArrayPanc1SimpleSignalRep1 PANC-1 1 broadPeak PANC-1 Exon array Signal Rep 1 from ENCODE/UW 0 149 0 0 0 127 127 127 0 0 0 expression 1 longLabel PANC-1 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel PANC-1 1\ subGroups cellType=t3PANC1 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayPanc1SimpleSignalRep1\ type broadPeak\ wgEncodeDukeAffyExonUrothelUt189SimpleSignalRep1V2 Uro UT189 1 bigBed 6 + Urothelia UT189 E. coli Exon array Signal Rep 1 from ENCODE/Duke 0 149 0 0 0 127 127 127 1 0 0 expression 1 longLabel Urothelia UT189 E. coli Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Uro UT189 1\ subGroups cellType=t3UROTHELIA treatment=UT189 rep=rep1\ track wgEncodeDukeAffyExonUrothelUt189SimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeUwHistoneAg04450H3k27me3StdHotspotsRep1 AG50 H3K27m3 Ht 1 broadPeak AG04450 H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 150 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel AG50 H3K27m3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t3AG04450 treatment=zNone rep=rep1\ track wgEncodeUwHistoneAg04450H3k27me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseCd4naivewb78495824RawRep1 CD4 NveWb824 Sg 1 bigWig 1.000000 15924.000000 CD4+ Naive Wb78495824 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 150 0 0 0 127 127 127 0 0 0 regulation 0 longLabel CD4+ Naive Wb78495824 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel CD4 NveWb824 Sg 1\ subGroups view=zRSig cellType=t3CD04NAIVEWB78495824 treatment=None rep=rep1\ track wgEncodeUwDnaseCd4naivewb78495824RawRep1\ type bigWig 1.000000 15924.000000\ pgNA12887indel CEU NA12887 indel pgSnp CEU NA12887 indel (Complete Genomics) 0 150 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12887 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12887 indel\ subGroups view=C_CG id=CPed_GS12887 type=Indel\ track pgNA12887indel\ wgEncodeUwRepliSeqGm12813SumSignalRep1 GM12813 Sd 1 bigWig 1.000000 3195.000000 GM12813 Repli-seq Summed Densities Rep 1 from ENCODE/UW 0 150 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12813 Repli-seq Summed Densities Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewSumSignal off\ shortLabel GM12813 Sd 1\ subGroups view=v5SumSignal cellType=t3GM12813 phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqGm12813SumSignalRep1\ type bigWig 1.000000 3195.000000\ encTfChipPkENCFF055NJR GM12878 NBN narrowPeak Transcription Factor ChIP-seq Peaks of NBN in GM12878 from ENCODE 3 (ENCFF055NJR) 1 150 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of NBN in GM12878 from ENCODE 3 (ENCFF055NJR)\ parent encTfChipPk off\ shortLabel GM12878 NBN\ subGroups cellType=GM12878 factor=NBN\ track encTfChipPkENCFF055NJR\ wgEncodeOpenChromDnaseGm18507BaseOverlapSignal GM18507 OS bigWig 0.000000 253.000000 GM18507 DNaseI HS Overlap Signal from ENCODE/Duke 2 150 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM18507 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel GM18507 OS\ subGroups view=SIGBO cellType=t3GM18507 treatment=zNONE\ track wgEncodeOpenChromDnaseGm18507BaseOverlapSignal\ type bigWig 0.000000 253.000000\ wgEncodeOpenChromChipGm20000CtcfBaseOverlapSignalRep1 GM20000 CTCF OS bigWig 0.000000 809.000000 GM20000 CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 150 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM20000 CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel GM20000 CTCF OS\ subGroups view=SIGBO factor=CTCF cellType=t3GM20000 treatment=AANONE\ track wgEncodeOpenChromChipGm20000CtcfBaseOverlapSignalRep1\ type bigWig 0.000000 809.000000\ wgEncodeUwTfbsGm12872CtcfStdHotspotsRep2 GM72 CTCF Ht 2 broadPeak GM12872 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 150 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12872 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM72 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3GM12872 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12872CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsGm12878Sp1Pcr1xRawRep2 GM78 SP1 PCR1 2 bigWig 0.173623 124.964996 GM12878 SP1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 150 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 SP1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 SP1 PCR1 2\ subGroups view=RawSignal factor=SP1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Sp1Pcr1xRawRep2\ type bigWig 0.173623 124.964996\ wgEncodeSydhTfbsH1hescZnf143IggrabSig H1ES Z143 IgR bigWig 1.000000 13457.000000 H1-hESC Znf143 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 150 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Znf143 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES Z143 IgR\ subGroups view=Signal factor=ZNF143166181AP cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescZnf143IggrabSig\ type bigWig 1.000000 13457.000000\ wgEncodeRikenCageHelas3NucleusPapAlnRep1 HeLa nucl pA+ A 1 bam HeLa-S3 nucleus polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 150 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HeLa nucl pA+ A 1\ subGroups view=Alignments cellType=t2HELAS3 localization=nucleus rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHelas3NucleusPapAlnRep1\ type bam\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_ctss_rev Hes3-gfpCardiomyocyticInduction_Day08Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_reverse 0 150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep1.CNhs13660.13335-143C5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13335-143C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_tpm_rev Hes3-gfpCardiomyocyticInduction_Day08Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_reverse 1 150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep1.CNhs13660.13335-143C5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13335-143C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalTapMinusRawRep3 HUVE nucl TAP - 1 bigWig 1.000000 3801872.000000 HUVEC TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 150 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HUVE nucl TAP - 1\ subGroups view=MinusSignal cellType=t2HUVEC localization=NUCLEUS protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalTapMinusRawRep3\ type bigWig 1.000000 3801872.000000\ wgEncodeAwgTfbsSydhK562Atf106325UniPk K562 ATF1 narrowPeak K562 TFBS Uniform Peaks of ATF1_(06-325) from ENCODE/Harvard/Analysis 1 150 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of ATF1_(06-325) from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 ATF1\ subGroups tier=a10 cellType=a10K562 factor=ATF1 lab=Harvard\ track wgEncodeAwgTfbsSydhK562Atf106325UniPk\ wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaPlusRawSigRep1 K562 nuc pA- + 1 bigWig 1.000000 7626713.000000 K562 nucleus polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 150 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleus polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel K562 nuc pA- + 1\ subGroups view=PlusSignal cellType=t1K562 localization=NUCLEUS rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 7626713.000000\ wgEncodeBroadHistoneK562Rnf2Sig K562 RNF2 bigWig 0.040000 360.040009 K562 RNF2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 150 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 RNF2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 RNF2\ subGroups view=Signal factor=RNF2 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Rnf2Sig\ type bigWig 0.040000 360.040009\ wgEncodeUwDgfNb4Pk NB4 Pk narrowPeak NB4 DNaseI DGF Peaks from ENCODE/UW 0 150 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel NB4 Pk\ subGroups view=Peaks cellType=t3NB4 treatment=aNONE rep=rep1\ track wgEncodeUwDgfNb4Pk\ type narrowPeak\ wgEncodeGisRnaPetNhekCytosolPapMinusRawRep1 NHEK cyto pA+ - 1 bigWig 1.000000 281517.000000 NHEK cytosol polyA+ clone-free RNA PET Minus signal Rep 1 from ENCODE/GIS 2 150 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK cytosol polyA+ clone-free RNA PET Minus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel NHEK cyto pA+ - 1\ subGroups view=v2MinusRawSignal cellType=cNHEK cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetNhekCytosolPapMinusRawRep1\ type bigWig 1.000000 281517.000000\ wgEncodeCaltechRnaSeqNhlfR2x75Il200AlignsRep2V2 NHLF 2x75 A 2 bam NHLF 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech 0 150 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHLF 200 bp paired read RNA-seq Alignments Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewAligns off\ shortLabel NHLF 2x75 A 2\ subGroups view=Aligns cellType=t3NHLF insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqNhlfR2x75Il200AlignsRep2V2\ type bam\ wgEncodeHaibMethylRrbsOvcar3UwSitesRep1 Ovcar-3 1 bed 9 + Ovcar-3 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 150 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Ovcar-3 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Ovcar-3 1\ subGroups cellType=t3OVCAR3 obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsOvcar3UwSitesRep1\ type bed 9 +\ wgEncodeUwAffyExonArrayPanc1SimpleSignalRep2 PANC-1 2 broadPeak PANC-1 Exon array Signal Rep 2 from ENCODE/UW 0 150 0 0 0 127 127 127 0 0 0 expression 1 longLabel PANC-1 Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel PANC-1 2\ subGroups cellType=t3PANC1 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayPanc1SimpleSignalRep2\ type broadPeak\ wgEncodeDukeAffyExonUrothelUt189SimpleSignalRep2 Uro UT189 2 bigBed 6 + Urothelia UT189 E. coli Exon array Signal Rep 2 from ENCODE/Duke 0 150 0 0 0 127 127 127 1 0 0 expression 1 longLabel Urothelia UT189 E. coli Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Uro UT189 2\ subGroups cellType=t3UROTHELIA treatment=UT189 rep=rep2\ track wgEncodeDukeAffyExonUrothelUt189SimpleSignalRep2\ type bigBed 6 +\ wgEncodeUwHistoneAg04450H3k27me3StdPkRep1 AG50 H3K27m3 Pk 1 narrowPeak AG04450 H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 151 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel AG50 H3K27m3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t3AG04450 treatment=zNone rep=rep1\ track wgEncodeUwHistoneAg04450H3k27me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseCd34mobilizedHotspotsRep1 CD34+ Mob Ht 1 broadPeak CD34+ Mobilized DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 151 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CD34+ Mobilized DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel CD34+ Mob Ht 1\ subGroups view=Hot cellType=t3CD34MOBILIZED rep=rep1 treatment=None\ track wgEncodeUwDnaseCd34mobilizedHotspotsRep1\ type broadPeak\ pgNA12888 CEU NA12888 pgSnp CEU pedigree 1463, NA12888 (Complete Genomics) 0 151 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU pedigree 1463, NA12888 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12888\ subGroups view=C_CG id=CPed_GS12888 type=SNP\ track pgNA12888\ encTfChipPkENCFF409QJU GM12878 NFATC1 narrowPeak Transcription Factor ChIP-seq Peaks of NFATC1 in GM12878 from ENCODE 3 (ENCFF409QJU) 1 151 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of NFATC1 in GM12878 from ENCODE 3 (ENCFF409QJU)\ parent encTfChipPk off\ shortLabel GM12878 NFATC1\ subGroups cellType=GM12878 factor=NFATC1\ track encTfChipPkENCFF409QJU\ wgEncodeOpenChromDnaseGm19238Pk GM19238 Pk narrowPeak GM19238 DNaseI HS Peaks from ENCODE/Duke 3 151 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM19238 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel GM19238 Pk\ subGroups view=Peaks cellType=t3GM19238 treatment=zNONE\ track wgEncodeOpenChromDnaseGm19238Pk\ type narrowPeak\ wgEncodeOpenChromChipGm20000InputSig GM20000 Input DS bigWig 0.000000 4.061500 GM20000 Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 151 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM20000 Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel GM20000 Input DS\ subGroups view=SIG factor=zCTRL cellType=t3GM20000 treatment=AANONE\ track wgEncodeOpenChromChipGm20000InputSig\ type bigWig 0.000000 4.061500\ wgEncodeUwTfbsGm12872CtcfStdPkRep2 GM72 CTCF Pk 2 narrowPeak GM12872 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 151 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12872 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM72 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3GM12872 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12872CtcfStdPkRep2\ type narrowPeak\ wgEncodeHaibTfbsGm12878SrfPcr2xPkRep1 GM78 SRF PCR2 1 broadPeak GM12878 SRF PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 151 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 SRF PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 SRF PCR2 1\ subGroups view=Peaks factor=SRF cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878SrfPcr2xPkRep1\ type broadPeak\ wgEncodeSydhTfbsH1hescZnf274m01UcdPk H1ES ZNF274 UCD narrowPeak H1-hESC ZNF274 (M01) UC Davis ChIP-seq Peaks from ENCODE/USC 3 151 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC ZNF274 (M01) UC Davis ChIP-seq Peaks from ENCODE/USC\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel H1ES ZNF274 UCD\ subGroups view=Peaks factor=ZNF274M01 cellType=t1H1HESC control=UCD treatment=aNONE\ track wgEncodeSydhTfbsH1hescZnf274m01UcdPk\ type narrowPeak\ wgEncodeRikenCageHelas3NucleusPapAlnRep2 HeLa nucl pA+ A 2 bam HeLa-S3 nucleus polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 151 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HeLa nucl pA+ A 2\ subGroups view=Alignments cellType=t2HELAS3 localization=nucleus rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHelas3NucleusPapAlnRep2\ type bam\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day08Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_forward 0 151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep2.CNhs13720.13347-143D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13347-143D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day08Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_forward 1 151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep2.CNhs13720.13347-143D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13347-143D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalTapMinusRawRep4 HUVE nucl TAP - 2 bigWig 1.000000 1938277.000000 HUVEC TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 151 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HUVE nucl TAP - 2\ subGroups view=MinusSignal cellType=t2HUVEC localization=NUCLEUS protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalTapMinusRawRep4\ type bigWig 1.000000 1938277.000000\ wgEncodeAwgTfbsSydhK562Atf3UniPk K562 ATF3 v narrowPeak K562 TFBS Uniform Peaks of ATF3 from ENCODE/Harvard/Analysis 1 151 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of ATF3 from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 ATF3 v\ subGroups tier=a10 cellType=a10K562 factor=ATF3 lab=Harvard\ track wgEncodeAwgTfbsSydhK562Atf3UniPk\ wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaPlusRawSigRep2 K562 nuc pA- + 2 bigWig 1.000000 2041837.000000 K562 nucleus polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 151 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleus polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel K562 nuc pA- + 2\ subGroups view=PlusSignal cellType=t1K562 localization=NUCLEUS rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 2041837.000000\ wgEncodeBroadHistoneK562Sap3039731StdPk K562 SAP30 broadPeak K562 SAP30 (39731) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 151 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 SAP30 (39731) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 SAP30\ subGroups view=Peaks factor=SAP3039731 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Sap3039731StdPk\ type broadPeak\ wgEncodeUwDgfNb4Sig NB4 Sig bigWig 1.000000 50365.000000 NB4 DNaseI DGF Per-base Signal from ENCODE/UW 2 151 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NB4 DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel NB4 Sig\ subGroups view=Signal cellType=t3NB4 treatment=aNONE rep=rep1\ track wgEncodeUwDgfNb4Sig\ type bigWig 1.000000 50365.000000\ wgEncodeGisRnaPetNhekCytosolPapPlusRawRep1 NHEK cyto pA+ + 1 bigWig 1.000000 250705.000000 NHEK cytosol polyA+ clone-free RNA PET Plus signal Rep 1 from ENCODE/GIS 2 151 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK cytosol polyA+ clone-free RNA PET Plus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel NHEK cyto pA+ + 1\ subGroups view=v2PlusRawSignal cellType=cNHEK cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetNhekCytosolPapPlusRawRep1\ type bigWig 1.000000 250705.000000\ wgEncodeUwRepliSeqNhekG1bPctSignalRep1 NHEK G1b 1 bigWig 1.000000 100.000000 NHEK G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 151 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK G1b-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel NHEK G1b 1\ subGroups view=v1PctSignal cellType=t3NHEK phase=p1G1B rep=rep1\ track wgEncodeUwRepliSeqNhekG1bPctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeCaltechRnaSeqNhlfR2x75Th1014Il200SigRep1V4 NHLF 2x75 Sg 1 bigWig 0.025000 107130.000000 NHLF 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech 2 151 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHLF 200 bp paired read RNA-seq Signal Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel NHLF 2x75 Sg 1\ subGroups view=Signal cellType=t3NHLF insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqNhlfR2x75Th1014Il200SigRep1V4\ type bigWig 0.025000 107130.000000\ wgEncodeHaibMethylRrbsOvcar3UwSitesRep2 Ovcar-3 2 bed 9 + Ovcar-3 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 151 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Ovcar-3 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Ovcar-3 2\ subGroups cellType=t3OVCAR3 obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsOvcar3UwSitesRep2\ type bed 9 +\ wgEncodeUwAffyExonArrayPrecSimpleSignalRep1 PrEC 1 broadPeak PrEC Exon-array Signal Rep 1 from ENCODE/UW 0 151 0 0 0 127 127 127 0 0 0 expression 1 longLabel PrEC Exon-array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel PrEC 1\ subGroups cellType=t3PREC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayPrecSimpleSignalRep1\ type broadPeak\ wgEncodeDukeAffyExonUrothelSimpleSignalRep1V2 Urothelia 1 bigBed 6 + Urothelia Exon array Signal Rep 1 from ENCODE/Duke 0 151 0 0 0 127 127 127 1 0 0 expression 1 longLabel Urothelia Exon array Signal Rep 1 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Urothelia 1\ subGroups cellType=t3UROTHELIA treatment=zNONE rep=rep1\ track wgEncodeDukeAffyExonUrothelSimpleSignalRep1V2\ type bigBed 6 +\ wgEncodeUwHistoneAg04450H3k27me3StdRawRep1 AG50 H3K27m3 Rw 1 bigWig 1.000000 6137.000000 AG04450 H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 152 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04450 H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG50 H3K27m3 Rw 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t3AG04450 treatment=zNone rep=rep1\ track wgEncodeUwHistoneAg04450H3k27me3StdRawRep1\ type bigWig 1.000000 6137.000000\ wgEncodeUwDnaseCd34mobilizedPkRep1 CD34+ Mob Pk 1 narrowPeak CD34+ Mobilized DNaseI HS Peaks Rep 1 from ENCODE/UW 1 152 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CD34+ Mobilized DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel CD34+ Mob Pk 1\ subGroups view=Peaks cellType=t3CD34MOBILIZED rep=rep1 treatment=None\ track wgEncodeUwDnaseCd34mobilizedPkRep1\ type narrowPeak\ pgNA12888indel CEU NA12888 indel pgSnp CEU NA12888 indel (Complete Genomics) 0 152 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12888 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12888 indel\ subGroups view=C_CG id=CPed_GS12888 type=Indel\ track pgNA12888indel\ encTfChipPkENCFF704ZYN GM12878 NFATC3 narrowPeak Transcription Factor ChIP-seq Peaks of NFATC3 in GM12878 from ENCODE 3 (ENCFF704ZYN) 1 152 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of NFATC3 in GM12878 from ENCODE 3 (ENCFF704ZYN)\ parent encTfChipPk off\ shortLabel GM12878 NFATC3\ subGroups cellType=GM12878 factor=NFATC3\ track encTfChipPkENCFF704ZYN\ wgEncodeOpenChromDnaseGm19238Sig GM19238 DS bigWig 0.000000 2.042500 GM19238 DNaseI HS Density Signal from ENCODE/Duke 2 152 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM19238 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel GM19238 DS\ subGroups view=SIG cellType=t3GM19238 treatment=zNONE\ track wgEncodeOpenChromDnaseGm19238Sig\ type bigWig 0.000000 2.042500\ wgEncodeUwTfbsGm12872CtcfStdRawRep2 GM72 CTCF Sg 2 bigWig 1.000000 6815.000000 GM12872 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 152 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12872 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM72 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3GM12872 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12872CtcfStdRawRep2\ type bigWig 1.000000 6815.000000\ wgEncodeHaibTfbsGm12878SrfPcr2xRawRep1 GM78 SRF PCR2 1 bigWig 0.116723 98.106003 GM12878 SRF PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 152 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 SRF PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 SRF PCR2 1\ subGroups view=RawSignal factor=SRF cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878SrfPcr2xRawRep1\ type bigWig 0.116723 98.106003\ wgEncodeSydhTfbsH1hescZnf274m01UcdSig H1ES ZNF274 UCD bigWig 1.000000 10138.000000 H1-hESC ZNF274 (M01) UC Davis ChIP-seq Signal from ENCODE/USC 2 152 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC ZNF274 (M01) UC Davis ChIP-seq Signal from ENCODE/USC\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES ZNF274 UCD\ subGroups view=Signal factor=ZNF274M01 cellType=t1H1HESC control=UCD treatment=aNONE\ track wgEncodeSydhTfbsH1hescZnf274m01UcdSig\ type bigWig 1.000000 10138.000000\ wgEncodeOpenChromChipHeartocInputSig Heart Input DS bigWig 0.000000 5.827500 Heart OC Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 152 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Heart OC Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Heart Input DS\ subGroups view=SIG factor=zCTRL cellType=t3HEARTOC treatment=AANONE\ track wgEncodeOpenChromChipHeartocInputSig\ type bigWig 0.000000 5.827500\ wgEncodeRikenCageHelas3CellPapTssHmm HeLa cell pA+ bed 6 HeLa-S3 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 152 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HeLa cell pA+\ subGroups view=TssHmm cellType=t2HELAS3 localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHelas3CellPapTssHmm\ type bed 6\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_ctss_rev Hes3-gfpCardiomyocyticInduction_Day08Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_reverse 0 152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep2.CNhs13720.13347-143D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13347-143D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_tpm_rev Hes3-gfpCardiomyocyticInduction_Day08Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_reverse 1 152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep2.CNhs13720.13347-143D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13347-143D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalTapPlusRawRep3 HUVE nucl TAP + 1 bigWig 1.000000 2075138.000000 HUVEC TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 152 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HUVE nucl TAP + 1\ subGroups view=PlusSignal cellType=t2HUVEC localization=NUCLEUS protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalTapPlusRawRep3\ type bigWig 1.000000 2075138.000000\ wgEncodeAwgTfbsHaibK562Atf3V0416101UniPk K562 ATF3 h narrowPeak K562 TFBS Uniform Peaks of ATF3 from ENCODE/HudsonAlpha/Analysis 1 152 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of ATF3 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 ATF3 h\ subGroups tier=a10 cellType=a10K562 factor=ATF3 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Atf3V0416101UniPk\ wgEncodeCshlLongRnaSeqK562NucleusPapAlnRep1 K562 nuc pA+ A 1 bam K562 nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 152 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel K562 nuc pA+ A 1\ subGroups view=Alignments cellType=t1K562 localization=NUCLEUS rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562NucleusPapAlnRep1\ type bam\ wgEncodeBroadHistoneK562Sap3039731StdSig K562 SAP30 bigWig 0.040000 32742.500000 K562 SAP30 (39731) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 152 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 SAP30 (39731) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 SAP30\ subGroups view=Signal factor=SAP3039731 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Sap3039731StdSig\ type bigWig 0.040000 32742.500000\ wgEncodeUwDgfNb4Raw NB4 Raw bigWig 1.000000 174943.000000 NB4 DNaseI DGF Raw Signal from ENCODE/UW 0 152 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NB4 DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel NB4 Raw\ subGroups view=zRaw cellType=t3NB4 treatment=aNONE rep=rep1\ track wgEncodeUwDgfNb4Raw\ type bigWig 1.000000 174943.000000\ wgEncodeGisRnaPetNhekCytosolPapAlnRep1 NHEK cyto pA+ A 1 bam NHEK cytosol polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS 0 152 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK cytosol polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel NHEK cyto pA+ A 1\ subGroups view=v3Alignments cellType=cNHEK cloned=Free localization=cytosol rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetNhekCytosolPapAlnRep1\ type bam\ wgEncodeUwRepliSeqNhekS1PctSignalRep1 NHEK S1 1 bigWig 1.000000 100.000000 NHEK S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 152 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK S1-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel NHEK S1 1\ subGroups view=v1PctSignal cellType=t3NHEK phase=p2S1 rep=rep1\ track wgEncodeUwRepliSeqNhekS1PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeCaltechRnaSeqNhlfR2x75Th1014Il200SigRep2V4 NHLF 2x75 Sg 2 bigWig 0.025000 149797.000000 NHLF 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech 2 152 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHLF 200 bp paired read RNA-seq Signal Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSignal off\ shortLabel NHLF 2x75 Sg 2\ subGroups view=Signal cellType=t3NHLF insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqNhlfR2x75Th1014Il200SigRep2V4\ type bigWig 0.025000 149797.000000\ wgEncodeHaibMethylRrbsPanc1HaibSitesRep1 PANC-1 HA 1 bed 9 + PANC-1 HAIB Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 152 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 HAIB Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel PANC-1 HA 1\ subGroups cellType=t3PANC1 obtainedBy=HAIB treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsPanc1HaibSitesRep1\ type bed 9 +\ wgEncodeUwAffyExonArrayPrecSimpleSignalRep2 PrEC 2 broadPeak PrEC Exon-array Signal Rep 2 from ENCODE/UW 0 152 0 0 0 127 127 127 0 0 0 expression 1 longLabel PrEC Exon-array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel PrEC 2\ subGroups cellType=t3PREC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayPrecSimpleSignalRep2\ type broadPeak\ wgEncodeDukeAffyExonUrothelSimpleSignalRep2 Urothelia 2 bigBed 6 + Urothelia Exon array Signal Rep 2 from ENCODE/Duke 0 152 0 0 0 127 127 127 1 0 0 expression 1 longLabel Urothelia Exon array Signal Rep 2 from ENCODE/Duke\ parent wgEncodeDukeAffyExon off\ shortLabel Urothelia 2\ subGroups cellType=t3UROTHELIA treatment=zNONE rep=rep2\ track wgEncodeDukeAffyExonUrothelSimpleSignalRep2\ type bigBed 6 +\ wgEncodeUwHistoneAg04450InputStdRawRep1 AG50 In Sg 1 bigWig 1.000000 17581.000000 AG04450 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 153 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG04450 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG50 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3AG04450 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg04450InputStdRawRep1\ type bigWig 1.000000 17581.000000\ wgEncodeUwDnaseCd34mobilizedRawRep1 CD34+ Mob Sg 1 bigWig 1.000000 15908.000000 CD34+ Mobilized DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 153 0 0 0 127 127 127 0 0 0 regulation 0 longLabel CD34+ Mobilized DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel CD34+ Mob Sg 1\ subGroups view=zRSig cellType=t3CD34MOBILIZED rep=rep1 treatment=None\ track wgEncodeUwDnaseCd34mobilizedRawRep1\ type bigWig 1.000000 15908.000000\ pgNA12889 CEU NA12889 pgSnp CEU pedigree 1463, NA12889 (Complete Genomics) 0 153 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU pedigree 1463, NA12889 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12889\ subGroups view=C_CG id=CPed_GS12889 type=SNP\ track pgNA12889\ encTfChipPkENCFF766ERZ GM12878 NFE2 narrowPeak Transcription Factor ChIP-seq Peaks of NFE2 in GM12878 from ENCODE 3 (ENCFF766ERZ) 1 153 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of NFE2 in GM12878 from ENCODE 3 (ENCFF766ERZ)\ parent encTfChipPk off\ shortLabel GM12878 NFE2\ subGroups cellType=GM12878 factor=NFE2\ track encTfChipPkENCFF766ERZ\ wgEncodeOpenChromDnaseGm19238BaseOverlapSignal GM19238 OS bigWig 0.000000 231.000000 GM19238 DNaseI HS Overlap Signal from ENCODE/Duke 2 153 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM19238 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel GM19238 OS\ subGroups view=SIGBO cellType=t3GM19238 treatment=zNONE\ track wgEncodeOpenChromDnaseGm19238BaseOverlapSignal\ type bigWig 0.000000 231.000000\ wgEncodeUwTfbsGm12872CtcfStdHotspotsRep3 GM72 CTCF Ht 3 broadPeak GM12872 CTCF TFBS ChIP-seq Hotspots 3 from ENCODE/UW 2 153 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12872 CTCF TFBS ChIP-seq Hotspots 3 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM72 CTCF Ht 3\ subGroups view=Hot factor=CTCF cellType=t3GM12872 rep=rep3 treatment=aNone\ track wgEncodeUwTfbsGm12872CtcfStdHotspotsRep3\ type broadPeak\ wgEncodeHaibTfbsGm12878SrfPcr2xPkRep2 GM78 SRF PCR2 2 broadPeak GM12878 SRF PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 153 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 SRF PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 SRF PCR2 2\ subGroups view=Peaks factor=SRF cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878SrfPcr2xPkRep2\ type broadPeak\ wgEncodeSydhTfbsH1hescInputIggrabSig H1ES Inpt IgR bigWig 1.000000 16832.000000 H1-hESC Input IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 153 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Input IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t1H1HESC control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsH1hescInputIggrabSig\ type bigWig 1.000000 16832.000000\ wgEncodeRikenCageHelas3CellPapPlusSignalRep1 HeLa cell pA+ + 1 bigWig 0.040000 14674.490234 HeLa-S3 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 153 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HeLa cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t2HELAS3 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHelas3CellPapPlusSignalRep1\ type bigWig 0.040000 14674.490234\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day08Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_forward 0 153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep3.CNhs13732.13359-143F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13359-143F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day08Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_forward 1 153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep3.CNhs13732.13359-143F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13359-143F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalTapPlusRawRep4 HUVE nucl TAP + 2 bigWig 1.000000 2777483.000000 HUVEC TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 153 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HUVE nucl TAP + 2\ subGroups view=PlusSignal cellType=t2HUVEC localization=NUCLEUS protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalTapPlusRawRep4\ type bigWig 1.000000 2777483.000000\ wgEncodeAwgTfbsSydhK562Bach1sc14700IggrabUniPk K562 BACH1 narrowPeak K562 TFBS Uniform Peaks of Bach1_(sc-14700) from ENCODE/Stanford/Analysis 1 153 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Bach1_(sc-14700) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 BACH1\ subGroups tier=a10 cellType=a10K562 factor=BACH1 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Bach1sc14700IggrabUniPk\ wgEncodeCshlLongRnaSeqK562NucleusPapAlnRep2 K562 nuc pA+ A 2 bam K562 nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 153 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel K562 nuc pA+ A 2\ subGroups view=Alignments cellType=t1K562 localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562NucleusPapAlnRep2\ type bam\ wgEncodeBroadHistoneK562Setdb1Pk K562 SETDB1 broadPeak K562 SETDB1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 153 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 SETDB1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 SETDB1\ subGroups view=Peaks factor=SETDB1 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Setdb1Pk\ type broadPeak\ wgEncodeOpenChromChipKidneyocCtcfPkRep1 Kidney CTCF Pk narrowPeak Kidney OC CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 153 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Kidney OC CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel Kidney CTCF Pk\ subGroups view=Peaks factor=CTCF cellType=t3KIDNEYOC treatment=AANONE\ track wgEncodeOpenChromChipKidneyocCtcfPkRep1\ type narrowPeak\ wgEncodeUwDgfNhaHotspots NH-A Hot broadPeak NH-A DNaseI DGF Hotspots from ENCODE/UW 0 153 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NH-A DNaseI DGF Hotspots from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewHotspots off\ shortLabel NH-A Hot\ subGroups view=Hotspots cellType=t3NHA treatment=aNONE rep=rep1\ track wgEncodeUwDgfNhaHotspots\ type broadPeak\ wgEncodeGisRnaPetNhekNucleusPapClustersRep1 NHEK nucl pA+ 1 bed 6 + NHEK nucleus polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS 2 153 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK nucleus polyA+ clone-free RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel NHEK nucl pA+ 1\ subGroups view=v1Clusters cellType=cNHEK cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetNhekNucleusPapClustersRep1\ type bed 6 +\ wgEncodeUwRepliSeqNhekS2PctSignalRep1 NHEK S2 1 bigWig 1.000000 100.000000 NHEK S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 153 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK S2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel NHEK S2 1\ subGroups view=v1PctSignal cellType=t3NHEK phase=p3S2 rep=rep1\ track wgEncodeUwRepliSeqNhekS2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeCaltechRnaSeqNhlfR2x75Il200SplicesRep1V2 NHLF 2x75 Sp 1 bam NHLF 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech 0 153 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHLF 200 bp paired read RNA-seq Splices Rep 1 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel NHLF 2x75 Sp 1\ subGroups view=Splices cellType=t3NHLF insertLength=il200 readType=a1R2x75 rep=rep1 treatment=aNone\ track wgEncodeCaltechRnaSeqNhlfR2x75Il200SplicesRep1V2\ type bam\ wgEncodeHaibMethylRrbsPanc1UwSitesRep1 PANC-1 UW 1 bed 9 + PANC-1 UW Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 153 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 UW Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel PANC-1 UW 1\ subGroups cellType=t3PANC1 obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsPanc1UwSitesRep1\ type bed 9 +\ wgEncodeUwAffyExonArrayRptecSimpleSignalRep1 RPTEC 1 broadPeak RPTEC Exon array Signal Rep 1 from ENCODE/UW 0 153 0 0 0 127 127 127 0 0 0 expression 1 longLabel RPTEC Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel RPTEC 1\ subGroups cellType=t3RPTEC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayRptecSimpleSignalRep1\ type broadPeak\ wgEncodeUwHistoneAg09309H3k4me3StdHotspotsRep1 AG09 H3K4M3 Ht 1 broadPeak AG09309 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 154 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09309 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel AG09 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3AG09309 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg09309H3k4me3StdHotspotsRep1\ type broadPeak\ pgNA12889indel CEU NA12889 indel pgSnp CEU NA12889 indel (Complete Genomics) 0 154 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12889 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12889 indel\ subGroups view=C_CG id=CPed_GS12889 type=Indel\ track pgNA12889indel\ wgEncodeUwDnaseCmkHotspotsRep1 CMK Ht 1 broadPeak CMK DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 154 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CMK DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel CMK Ht 1\ subGroups view=Hot cellType=t3CMK rep=rep1 treatment=None\ track wgEncodeUwDnaseCmkHotspotsRep1\ type broadPeak\ encTfChipPkENCFF628QJU GM12878 NFIC narrowPeak Transcription Factor ChIP-seq Peaks of NFIC in GM12878 from ENCODE 3 (ENCFF628QJU) 1 154 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of NFIC in GM12878 from ENCODE 3 (ENCFF628QJU)\ parent encTfChipPk off\ shortLabel GM12878 NFIC\ subGroups cellType=GM12878 factor=NFIC\ track encTfChipPkENCFF628QJU\ wgEncodeOpenChromDnaseGm19239Pk GM19239 Pk narrowPeak GM19239 DNaseI HS Peaks from ENCODE/Duke 3 154 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM19239 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel GM19239 Pk\ subGroups view=Peaks cellType=t3GM19239 treatment=zNONE\ track wgEncodeOpenChromDnaseGm19239Pk\ type narrowPeak\ wgEncodeUwTfbsGm12872CtcfStdPkRep3 GM72 CTCF Pk 3 narrowPeak GM12872 CTCF TFBS ChIP-seq Peaks 3 from ENCODE/UW 3 154 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12872 CTCF TFBS ChIP-seq Peaks 3 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM72 CTCF Pk 3\ subGroups view=Peaks factor=CTCF cellType=t3GM12872 rep=rep3 treatment=aNone\ track wgEncodeUwTfbsGm12872CtcfStdPkRep3\ type narrowPeak\ wgEncodeHaibTfbsGm12878SrfPcr2xRawRep2 GM78 SRF PCR2 2 bigWig 0.116891 88.252899 GM12878 SRF PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 154 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 SRF PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 SRF PCR2 2\ subGroups view=RawSignal factor=SRF cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878SrfPcr2xRawRep2\ type bigWig 0.116891 88.252899\ wgEncodeSydhTfbsH1hescInputUcdSig H1ES Inpt UCD bigWig 0.000000 5709.399902 H1-hESC Input UC Davis ChIP-seq Signal from ENCODE/SYDH 2 154 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Input UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel H1ES Inpt UCD\ subGroups view=Signal factor=ZZZINPUTUCD cellType=t1H1HESC control=UCD treatment=aNONE\ track wgEncodeSydhTfbsH1hescInputUcdSig\ type bigWig 0.000000 5709.399902\ wgEncodeRikenCageHelas3CellPapPlusSignalRep2 HeLa cell pA+ + 2 bigWig 0.050000 11799.719727 HeLa-S3 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 154 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HeLa cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t2HELAS3 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHelas3CellPapPlusSignalRep2\ type bigWig 0.050000 11799.719727\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_ctss_rev Hes3-gfpCardiomyocyticInduction_Day08Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_reverse 0 154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep3.CNhs13732.13359-143F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13359-143F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_tpm_rev Hes3-gfpCardiomyocyticInduction_Day08Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_reverse 1 154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep3.CNhs13732.13359-143F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13359-143F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CellCiptapContigs IMR9 cell CIP C bed 6 IMR90 CIP-TAP whole cell small RNA-seq Contigs from ENCODE/CSHL 2 154 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 CIP-TAP whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel IMR9 cell CIP C\ subGroups view=Contigs rep=Pooled cellType=t2IMR90 localization=CELL protocol=CIPTAP rank=none\ track wgEncodeCshlShortRnaSeqImr90CellCiptapContigs\ type bed 6\ wgEncodeAwgTfbsHaibK562Bcl3Pcr1xUniPk K562 BCL3 narrowPeak K562 TFBS Uniform Peaks of BCL3 from ENCODE/HudsonAlpha/Analysis 1 154 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of BCL3 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 BCL3\ subGroups tier=a10 cellType=a10K562 factor=BCL3 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Bcl3Pcr1xUniPk\ wgEncodeCshlLongRnaSeqK562NucleusPapContigs K562 nuc pA+ C bed 6 + K562 nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 154 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel K562 nuc pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t1K562 localization=NUCLEUS rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqK562NucleusPapContigs\ type bed 6 +\ wgEncodeBroadHistoneK562Setdb1Sig K562 SETDB1 bigWig 0.040000 400.000000 K562 SETDB1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 154 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 SETDB1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 SETDB1\ subGroups view=Signal factor=SETDB1 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Setdb1Sig\ type bigWig 0.040000 400.000000\ wgEncodeOpenChromChipKidneyocCtcfSigRep1 Kidney CTCF DS bigWig 0.000000 9.869400 Kidney OC CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 154 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Kidney OC CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Kidney CTCF DS\ subGroups view=SIG factor=CTCF cellType=t3KIDNEYOC treatment=AANONE\ track wgEncodeOpenChromChipKidneyocCtcfSigRep1\ type bigWig 0.000000 9.869400\ wgEncodeUwDgfNhaPk NH-A Pk narrowPeak NH-A DNaseI DGF Peaks from ENCODE/UW 0 154 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NH-A DNaseI DGF Peaks from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewPeaks off\ shortLabel NH-A Pk\ subGroups view=Peaks cellType=t3NHA treatment=aNONE rep=rep1\ track wgEncodeUwDgfNhaPk\ type narrowPeak\ wgEncodeGisRnaPetNhekNucleusPapMinusRawRep1 NHEK nucl pA+ - 1 bigWig 1.000000 5532109.000000 NHEK nucleus polyA+ clone-free RNA PET Minus signal Rep 1 from ENCODE/GIS 2 154 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK nucleus polyA+ clone-free RNA PET Minus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel NHEK nucl pA+ - 1\ subGroups view=v2MinusRawSignal cellType=cNHEK cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetNhekNucleusPapMinusRawRep1\ type bigWig 1.000000 5532109.000000\ wgEncodeUwRepliSeqNhekS3PctSignalRep1 NHEK S3 1 bigWig 1.000000 100.000000 NHEK S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 154 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK S3-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel NHEK S3 1\ subGroups view=v1PctSignal cellType=t3NHEK phase=p4S3 rep=rep1\ track wgEncodeUwRepliSeqNhekS3PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeCaltechRnaSeqNhlfR2x75Il200SplicesRep2V2 NHLF 2x75 Sp 2 bam NHLF 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech 0 154 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHLF 200 bp paired read RNA-seq Splices Rep 2 from ENCODE/Caltech\ parent wgEncodeCaltechRnaSeqViewSplices off\ shortLabel NHLF 2x75 Sp 2\ subGroups view=Splices cellType=t3NHLF insertLength=il200 readType=a1R2x75 rep=rep2 treatment=aNone\ track wgEncodeCaltechRnaSeqNhlfR2x75Il200SplicesRep2V2\ type bam\ wgEncodeHaibMethylRrbsPanc1HaibSitesRep2 PANC-1 HA 2 bed 9 + PANC-1 HAIB Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 154 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 HAIB Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel PANC-1 HA 2\ subGroups cellType=t3PANC1 obtainedBy=HAIB treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsPanc1HaibSitesRep2\ type bed 9 +\ wgEncodeUwAffyExonArrayRptecSimpleSignalRep2 RPTEC 2 broadPeak RPTEC Exon array Signal Rep 2 from ENCODE/UW 0 154 0 0 0 127 127 127 0 0 0 expression 1 longLabel RPTEC Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel RPTEC 2\ subGroups cellType=t3RPTEC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayRptecSimpleSignalRep2\ type broadPeak\ wgEncodeUwHistoneAg09309H3k4me3StdPkRep1 AG09 H3K4M3 Pk 1 narrowPeak AG09309 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 155 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09309 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel AG09 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3AG09309 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg09309H3k4me3StdPkRep1\ type narrowPeak\ pgNA12890 CEU NA12890 pgSnp CEU pedigree 1463, NA12890 (Complete Genomics) 0 155 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU pedigree 1463, NA12890 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12890\ subGroups view=C_CG id=CPed_GS12890 type=SNP\ track pgNA12890\ wgEncodeUwDnaseCmkPkRep1 CMK Pk 1 narrowPeak CMK DNaseI HS Peaks Rep 1 from ENCODE/UW 1 155 0 0 0 127 127 127 0 0 0 regulation 1 longLabel CMK DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel CMK Pk 1\ subGroups view=Peaks cellType=t3CMK rep=rep1 treatment=None\ track wgEncodeUwDnaseCmkPkRep1\ type narrowPeak\ encTfChipPkENCFF166FRO GM12878 NFXL1 narrowPeak Transcription Factor ChIP-seq Peaks of NFXL1 in GM12878 from ENCODE 3 (ENCFF166FRO) 1 155 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of NFXL1 in GM12878 from ENCODE 3 (ENCFF166FRO)\ parent encTfChipPk off\ shortLabel GM12878 NFXL1\ subGroups cellType=GM12878 factor=NFXL1\ track encTfChipPkENCFF166FRO\ wgEncodeOpenChromDnaseGm19239Sig GM19239 DS bigWig 0.000000 1.811800 GM19239 DNaseI HS Density Signal from ENCODE/Duke 2 155 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM19239 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel GM19239 DS\ subGroups view=SIG cellType=t3GM19239 treatment=zNONE\ track wgEncodeOpenChromDnaseGm19239Sig\ type bigWig 0.000000 1.811800\ wgEncodeUwTfbsGm12872CtcfStdRawRep3 GM72 CTCF Sg 3 bigWig 1.000000 8480.000000 GM12872 CTCF TFBS ChIP-seq Raw Signal 3 from ENCODE/UW 2 155 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12872 CTCF TFBS ChIP-seq Raw Signal 3 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM72 CTCF Sg 3\ subGroups view=zRSig factor=CTCF cellType=t3GM12872 rep=rep3 treatment=aNone\ track wgEncodeUwTfbsGm12872CtcfStdRawRep3\ type bigWig 1.000000 8480.000000\ wgEncodeHaibTfbsGm12878SrfV0416101PkRep1 GM78 SRF V101 1 broadPeak GM12878 SRF v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 155 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 SRF v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 SRF V101 1\ subGroups view=Peaks factor=SRF cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878SrfV0416101PkRep1\ type broadPeak\ wgEncodeRikenCageHelas3CellPapMinusSignalRep1 HeLa cell pA+ - 1 bigWig 0.040000 10177.059570 HeLa-S3 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 155 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HeLa cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t2HELAS3 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHelas3CellPapMinusSignalRep1\ type bigWig 0.040000 10177.059570\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day09Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_forward 0 155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep1.CNhs13661.13336-143C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13336-143C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day09Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_forward 1 155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep1.CNhs13661.13336-143C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13336-143C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CellShorttotalCiptapMinusRep1 IMR9 cell CIP - 1 bigWig 1.000000 14584083.000000 IMR90 CIP-TAP whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 155 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 CIP-TAP whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 cell CIP - 1\ subGroups view=MinusSignal cellType=t2IMR90 localization=CELL protocol=CIPTAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90CellShorttotalCiptapMinusRep1\ type bigWig 1.000000 14584083.000000\ wgEncodeSydhTfbsK562Arid3asc8821IggrabPk K562 ARI3 IgR narrowPeak K562 ARID3A SC8821 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 155 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ARID3A SC8821 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 ARI3 IgR\ subGroups view=Peaks factor=ARID3ASC8821 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Arid3asc8821IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsHaibK562Bclaf101388Pcr1xUniPk K562 BCLAF1 narrowPeak K562 TFBS Uniform Peaks of BCLAF1_(SC-101388) from ENCODE/HudsonAlpha/Analysis 1 155 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of BCLAF1_(SC-101388) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 BCLAF1\ subGroups tier=a10 cellType=a10K562 factor=BCLAF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Bclaf101388Pcr1xUniPk\ wgEncodeCshlLongRnaSeqK562NucleusPapJunctions K562 nuc pA+ J bed 6 + K562 nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 155 46 0 184 150 127 219 0 0 0 expression 1 color 46,0,184\ longLabel K562 nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel K562 nuc pA+ J\ subGroups view=Junctions cellType=t1K562 localization=NUCLEUS rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqK562NucleusPapJunctions\ type bed 6 +\ wgEncodeBroadHistoneK562Sirt6Pk K562 SIRT6 broadPeak K562 SIRT6 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 155 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 SIRT6 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 SIRT6\ subGroups view=Peaks factor=SIRT6 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Sirt6Pk\ type broadPeak\ wgEncodeOpenChromChipKidneyocCtcfBaseOverlapSignalRep1 Kidney CTCF OS bigWig 0.000000 1153.000000 Kidney OC CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 155 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Kidney OC CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel Kidney CTCF OS\ subGroups view=SIGBO factor=CTCF cellType=t3KIDNEYOC treatment=AANONE\ track wgEncodeOpenChromChipKidneyocCtcfBaseOverlapSignalRep1\ type bigWig 0.000000 1153.000000\ wgEncodeUwDgfNhaSig NH-A Sig bigWig 1.000000 30394.000000 NH-A DNaseI DGF Per-base Signal from ENCODE/UW 2 155 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NH-A DNaseI DGF Per-base Signal from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewSignal off\ shortLabel NH-A Sig\ subGroups view=Signal cellType=t3NHA treatment=aNONE rep=rep1\ track wgEncodeUwDgfNhaSig\ type bigWig 1.000000 30394.000000\ wgEncodeGisRnaPetNhekNucleusPapPlusRawRep1 NHEK nucl pA+ + 1 bigWig 1.000000 3068579.000000 NHEK nucleus polyA+ clone-free RNA PET Plus signal Rep 1 from ENCODE/GIS 2 155 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK nucleus polyA+ clone-free RNA PET Plus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel NHEK nucl pA+ + 1\ subGroups view=v2PlusRawSignal cellType=cNHEK cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetNhekNucleusPapPlusRawRep1\ type bigWig 1.000000 3068579.000000\ wgEncodeUwRepliSeqNhekS4PctSignalRep1 NHEK S4 1 bigWig 1.000000 100.000000 NHEK S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 155 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK S4-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel NHEK S4 1\ subGroups view=v1PctSignal cellType=t3NHEK phase=p5S4 rep=rep1\ track wgEncodeUwRepliSeqNhekS4PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeHaibMethylRrbsPanc1UwSitesRep2 PANC-1 UW 2 bed 9 + PANC-1 UW Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 155 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 UW Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel PANC-1 UW 2\ subGroups cellType=t3PANC1 obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsPanc1UwSitesRep2\ type bed 9 +\ wgEncodeUwAffyExonArraySaecSimpleSignalRep1 SAEC 1 broadPeak SAEC Exon array Signal Rep 1 from ENCODE/UW 0 155 0 0 0 127 127 127 0 0 0 expression 1 longLabel SAEC Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel SAEC 1\ subGroups cellType=t3SAEC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArraySaecSimpleSignalRep1\ type broadPeak\ wgEncodeUwHistoneAg09309H3k4me3StdRawRep1 AG09 H3K4M3 Sg 1 bigWig 1.000000 2329.000000 AG09309 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 156 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG09309 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG09 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3AG09309 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg09309H3k4me3StdRawRep1\ type bigWig 1.000000 2329.000000\ pgNA12890indel CEU NA12890 indel pgSnp CEU NA12890 indel (Complete Genomics) 0 156 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12890 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12890 indel\ subGroups view=C_CG id=CPed_GS12890 type=Indel\ track pgNA12890indel\ wgEncodeUwDnaseCmkRawRep1 CMK Sg 1 bigWig 1.000000 66926.000000 CMK DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 156 0 0 0 127 127 127 0 0 0 regulation 0 longLabel CMK DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel CMK Sg 1\ subGroups view=zRSig cellType=t3CMK rep=rep1 treatment=None\ track wgEncodeUwDnaseCmkRawRep1\ type bigWig 1.000000 66926.000000\ encTfChipPkENCFF414JLN GM12878 NFYA narrowPeak Transcription Factor ChIP-seq Peaks of NFYA in GM12878 from ENCODE 3 (ENCFF414JLN) 1 156 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of NFYA in GM12878 from ENCODE 3 (ENCFF414JLN)\ parent encTfChipPk off\ shortLabel GM12878 NFYA\ subGroups cellType=GM12878 factor=NFYA\ track encTfChipPkENCFF414JLN\ wgEncodeOpenChromDnaseGm19239BaseOverlapSignalV2 GM19239 OS bigWig 0.000000 209.000000 GM19239 DNaseI HS Overlap Signal from ENCODE/Duke 2 156 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM19239 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel GM19239 OS\ subGroups view=SIGBO cellType=t3GM19239 treatment=zNONE\ track wgEncodeOpenChromDnaseGm19239BaseOverlapSignalV2\ type bigWig 0.000000 209.000000\ wgEncodeUwTfbsGm12872InputStdRawRep1 GM72 In Sg 1 bigWig 1.000000 7087.000000 GM12872 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 156 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12872 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM72 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3GM12872 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12872InputStdRawRep1\ type bigWig 1.000000 7087.000000\ wgEncodeHaibTfbsGm12878SrfV0416101RawRep1 GM78 SRF V101 1 bigWig 0.227604 196.365997 GM12878 SRF v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 156 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 SRF v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 SRF V101 1\ subGroups view=RawSignal factor=SRF cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878SrfV0416101RawRep1\ type bigWig 0.227604 196.365997\ wgEncodeRikenCageHelas3CellPapMinusSignalRep2 HeLa cell pA+ - 2 bigWig 0.050000 13169.519531 HeLa-S3 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 156 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HeLa cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t2HELAS3 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHelas3CellPapMinusSignalRep2\ type bigWig 0.050000 13169.519531\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_ctss_rev Hes3-gfpCardiomyocyticInduction_Day09Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_reverse 0 156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep1.CNhs13661.13336-143C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13336-143C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_tpm_rev Hes3-gfpCardiomyocyticInduction_Day09Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_reverse 1 156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep1.CNhs13661.13336-143C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13336-143C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CellShorttotalCiptapMinusRep2 IMR9 cell CIP - 2 bigWig 1.000000 7589970.000000 IMR90 CIP-TAP whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 156 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 CIP-TAP whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 cell CIP - 2\ subGroups view=MinusSignal cellType=t2IMR90 localization=CELL protocol=CIPTAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90CellShorttotalCiptapMinusRep2\ type bigWig 1.000000 7589970.000000\ wgEncodeSydhTfbsK562Arid3asc8821IggrabSig K562 ARI3 IgR bigWig 1.000000 15048.000000 K562 ARID3A SC8821 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 156 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ARID3A SC8821 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 ARI3 IgR\ subGroups view=Signal factor=ARID3ASC8821 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Arid3asc8821IggrabSig\ type bigWig 1.000000 15048.000000\ wgEncodeAwgTfbsSydhK562Bdp1UniPk K562 BDP1 narrowPeak K562 TFBS Uniform Peaks of BDP1 from ENCODE/Harvard/Analysis 1 156 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of BDP1 from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 BDP1\ subGroups tier=a10 cellType=a10K562 factor=BDP1 lab=Harvard\ track wgEncodeAwgTfbsSydhK562Bdp1UniPk\ wgEncodeCshlLongRnaSeqK562NucleusPapMinusRawSigRep1 K562 nuc pA+ - 1 bigWig 1.000000 224694.000000 K562 nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 156 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel K562 nuc pA+ - 1\ subGroups view=MinusSignal cellType=t1K562 localization=NUCLEUS rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562NucleusPapMinusRawSigRep1\ type bigWig 1.000000 224694.000000\ wgEncodeBroadHistoneK562Sirt6Sig K562 SIRT6 bigWig 0.040000 377.160004 K562 SIRT6 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 156 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 SIRT6 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 SIRT6\ subGroups view=Signal factor=SIRT6 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Sirt6Sig\ type bigWig 0.040000 377.160004\ wgEncodeOpenChromChipKidneyocInputSig Kidney Input DS bigWig 0.000000 8.637000 Kidney OC Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 156 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Kidney OC Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Kidney Input DS\ subGroups view=SIG factor=zCTRL cellType=t3KIDNEYOC treatment=AANONE\ track wgEncodeOpenChromChipKidneyocInputSig\ type bigWig 0.000000 8.637000\ wgEncodeUwDgfNhaRaw NH-A Raw bigWig 1.000000 177826.000000 NH-A DNaseI DGF Raw Signal from ENCODE/UW 0 156 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NH-A DNaseI DGF Raw Signal from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewzRaw off\ shortLabel NH-A Raw\ subGroups view=zRaw cellType=t3NHA treatment=aNONE rep=rep1\ track wgEncodeUwDgfNhaRaw\ type bigWig 1.000000 177826.000000\ wgEncodeUwRepliSeqNhekG2PctSignalRep1 NHEK G2 1 bigWig 1.000000 100.000000 NHEK G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW 1 156 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK G2-Phase Repli-seq Percentage-normalized Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPctSignal off\ shortLabel NHEK G2 1\ subGroups view=v1PctSignal cellType=t3NHEK phase=p6G2 rep=rep1\ track wgEncodeUwRepliSeqNhekG2PctSignalRep1\ type bigWig 1.000000 100.000000\ wgEncodeGisRnaPetNhekNucleusPapAlnRep1 NHEK nucl pA+ A 1 bam NHEK nucleus polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS 0 156 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK nucleus polyA+ clone-free RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel NHEK nucl pA+ A 1\ subGroups view=v3Alignments cellType=cNHEK cloned=Free localization=nucleus rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetNhekNucleusPapAlnRep1\ type bam\ wgEncodeHaibMethylRrbsBcpancreash12817nBiochainSitesRep1 Pancreas_BC 1 bed 9 + Pancreas BC H12817N Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 156 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Pancreas BC H12817N Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Pancreas_BC 1\ subGroups cellType=t3PANCREASBCH12817N obtainedBy=BioChain treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBcpancreash12817nBiochainSitesRep1\ type bed 9 +\ wgEncodeUwAffyExonArraySaecSimpleSignalRep2 SAEC 2 broadPeak SAEC Exon array Signal Rep 2 from ENCODE/UW 0 156 0 0 0 127 127 127 0 0 0 expression 1 longLabel SAEC Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel SAEC 2\ subGroups cellType=t3SAEC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArraySaecSimpleSignalRep2\ type broadPeak\ wgEncodeUwHistoneAg09309H3k4me3StdHotspotsRep2 AG09 H3K4M3 Ht 2 broadPeak AG09309 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 157 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09309 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel AG09 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3AG09309 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAg09309H3k4me3StdHotspotsRep2\ type broadPeak\ pgNA12893 CEU NA12893 pgSnp CEU pedigree 1463, NA12893 (Complete Genomics) 0 157 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU pedigree 1463, NA12893 (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12893\ subGroups view=C_CG id=CPed_GS12893 type=SNP\ track pgNA12893\ wgEncodeUwDnaseGm04503HotspotsRep1 GM04503 Ht 1 broadPeak GM04503 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 157 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM04503 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel GM04503 Ht 1\ subGroups view=Hot cellType=t3GM04503 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm04503HotspotsRep1\ type broadPeak\ encTfChipPkENCFF467NRS GM12878 NFYB narrowPeak Transcription Factor ChIP-seq Peaks of NFYB in GM12878 from ENCODE 3 (ENCFF467NRS) 1 157 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of NFYB in GM12878 from ENCODE 3 (ENCFF467NRS)\ parent encTfChipPk off\ shortLabel GM12878 NFYB\ subGroups cellType=GM12878 factor=NFYB\ track encTfChipPkENCFF467NRS\ wgEncodeOpenChromDnaseGm19240Pk GM19240 Pk narrowPeak GM19240 DNaseI HS Peaks from ENCODE/Duke 3 157 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM19240 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel GM19240 Pk\ subGroups view=Peaks cellType=t3GM19240 treatment=zNONE\ track wgEncodeOpenChromDnaseGm19240Pk\ type narrowPeak\ wgEncodeUwTfbsGm12873CtcfStdHotspotsRep1 GM73 CTCF Ht 1 broadPeak GM12873 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 157 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12873 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM73 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3GM12873 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12873CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsGm12878SrfV0416101PkRep2 GM78 SRF V101 2 broadPeak GM12878 SRF v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 157 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 SRF v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 SRF V101 2\ subGroups view=Peaks factor=SRF cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878SrfV0416101PkRep2\ type broadPeak\ wgEncodeRikenCageHelas3CellPapAlnRep1 HeLa cell pA+ A 1 bam HeLa-S3 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 157 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HeLa cell pA+ A 1\ subGroups view=Alignments cellType=t2HELAS3 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHelas3CellPapAlnRep1\ type bam\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day09Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_forward 0 157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep2.CNhs13721.13348-143D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13348-143D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day09Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_forward 1 157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep2.CNhs13721.13348-143D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13348-143D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CellShorttotalCiptapPlusRep1 IMR9 cell CIP + 1 bigWig 1.000000 14581044.000000 IMR90 CIP-TAP whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 157 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 CIP-TAP whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 cell CIP + 1\ subGroups view=PlusSignal cellType=t2IMR90 localization=CELL protocol=CIPTAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90CellShorttotalCiptapPlusRep1\ type bigWig 1.000000 14581044.000000\ wgEncodeSydhTfbsK562Atf106325StdPk K562 ATF1 Std narrowPeak K562 ATF1 Standard ChIP-seq Peaks from ENCODE/SYDH 3 157 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ATF1 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 ATF1 Std\ subGroups view=Peaks factor=ATF106325 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Atf106325StdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Bhlhe40nb100IggrabUniPk K562 BHLHE40 narrowPeak K562 TFBS Uniform Peaks of BHLHE40_(NB100-1800) from ENCODE/Stanford/Analysis 1 157 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of BHLHE40_(NB100-1800) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 BHLHE40\ subGroups tier=a10 cellType=a10K562 factor=BHLHE40 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Bhlhe40nb100IggrabUniPk\ wgEncodeCshlLongRnaSeqK562NucleusPapMinusRawSigRep2 K562 nuc pA+ - 2 bigWig 1.000000 101888.000000 K562 nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 157 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel K562 nuc pA+ - 2\ subGroups view=MinusSignal cellType=t1K562 localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562NucleusPapMinusRawSigRep2\ type bigWig 1.000000 101888.000000\ wgEncodeBroadHistoneK562Suz12051317Pk K562 SUZ12 broadPeak K562 SUZ12 (05-1317) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 157 46 0 184 150 127 219 1 0 0 regulation 1 color 46,0,184\ longLabel K562 SUZ12 (05-1317) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel K562 SUZ12\ subGroups view=Peaks factor=SUZ12051317 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Suz12051317Pk\ type broadPeak\ wgEncodeOpenChromChipLncapCtcfPkRep1 LNCaP CTCF Pk narrowPeak LNCaP CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 157 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel LNCaP CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel LNCaP CTCF Pk\ subGroups view=Peaks factor=CTCF cellType=t3LNCAP treatment=AANONE\ track wgEncodeOpenChromChipLncapCtcfPkRep1\ type narrowPeak\ wgEncodeUwDgfNhdfadHotspots NHDF-Ad Hot broadPeak NHDF-Ad DNaseI DGF Hotspots from ENCODE/UW 0 157 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-Ad DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel NHDF-Ad Hot\ subGroups view=Hotspots cellType=t3NHDFAD treatment=aNONE rep=rep1\ track wgEncodeUwDgfNhdfadHotspots\ type broadPeak\ wgEncodeUwRepliSeqNhekPkRep1 NHEK Pk 1 bed 9 NHEK Repli-seq Peaks Rep 1 from ENCODE/UW 0 157 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK Repli-seq Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewPeaks off\ shortLabel NHEK Pk 1\ subGroups view=v2Peaks cellType=t3NHEK phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqNhekPkRep1\ type bed 9\ wgEncodeHaibMethylRrbsBcpancreash12817nBiochainSitesRep2 Pancreas_BC 2 bed 9 + Pancreas BC H12817N Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 157 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Pancreas BC H12817N Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Pancreas_BC 2\ subGroups cellType=t3PANCREASBCH12817N obtainedBy=BioChain treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBcpancreash12817nBiochainSitesRep2\ type bed 9 +\ wgEncodeGisRnaPetProstateCellPapClustersRep1 Pros cell pA+ 1 bed 6 + Prostate whole cell polyA+ clone-based RNA PET Clusters Rep 1 from ENCODE/GIS 2 157 0 0 0 127 127 127 0 0 0 expression 1 longLabel Prostate whole cell polyA+ clone-based RNA PET Clusters Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewClusters off\ shortLabel Pros cell pA+ 1\ subGroups view=v1Clusters cellType=cPROSTATE cloned=Based localization=cell rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetProstateCellPapClustersRep1\ type bed 6 +\ wgEncodeUwAffyExonArraySkmcSimpleSignalRep1 SKMC 1 broadPeak SKMC Exon array Signal Rep 1 from ENCODE/UW 0 157 0 0 0 127 127 127 0 0 0 expression 1 longLabel SKMC Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel SKMC 1\ subGroups cellType=t3SKMC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArraySkmcSimpleSignalRep1\ type broadPeak\ wgEncodeUwHistoneAg09309H3k4me3StdPkRep2 AG09 H3K4M3 Pk 2 narrowPeak AG09309 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 158 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09309 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel AG09 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3AG09309 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAg09309H3k4me3StdPkRep2\ type narrowPeak\ pgNA12893indel CEU NA12893 indel pgSnp CEU NA12893 indel (Complete Genomics) 0 158 0 0 0 127 127 127 0 0 0 varRep 1 longLabel CEU NA12893 indel (Complete Genomics)\ parent pgSnpCg\ shortLabel CEU NA12893 indel\ subGroups view=C_CG id=CPed_GS12893 type=Indel\ track pgNA12893indel\ wgEncodeUwDnaseGm04503PkRep1 GM04503 Pk 1 narrowPeak GM04503 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 158 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM04503 DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel GM04503 Pk 1\ subGroups view=Peaks cellType=t3GM04503 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm04503PkRep1\ type narrowPeak\ encTfChipPkENCFF381SBC GM12878 NR2C1 narrowPeak Transcription Factor ChIP-seq Peaks of NR2C1 in GM12878 from ENCODE 3 (ENCFF381SBC) 1 158 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of NR2C1 in GM12878 from ENCODE 3 (ENCFF381SBC)\ parent encTfChipPk off\ shortLabel GM12878 NR2C1\ subGroups cellType=GM12878 factor=NR2C1\ track encTfChipPkENCFF381SBC\ wgEncodeOpenChromDnaseGm19240Sig GM19240 DS bigWig 0.000000 1.867200 GM19240 DNaseI HS Density Signal from ENCODE/Duke 2 158 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM19240 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel GM19240 DS\ subGroups view=SIG cellType=t3GM19240 treatment=zNONE\ track wgEncodeOpenChromDnaseGm19240Sig\ type bigWig 0.000000 1.867200\ wgEncodeUwTfbsGm12873CtcfStdPkRep1 GM73 CTCF Pk 1 narrowPeak GM12873 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 158 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12873 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM73 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3GM12873 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12873CtcfStdPkRep1\ type narrowPeak\ wgEncodeHaibTfbsGm12878SrfV0416101RawRep2 GM78 SRF V101 2 bigWig 0.191033 128.994995 GM12878 SRF v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 158 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 SRF v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 SRF V101 2\ subGroups view=RawSignal factor=SRF cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878SrfV0416101RawRep2\ type bigWig 0.191033 128.994995\ wgEncodeRikenCageHelas3CellPapAlnRep2 HeLa cell pA+ A 2 bam HeLa-S3 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 158 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HeLa cell pA+ A 2\ subGroups view=Alignments cellType=t2HELAS3 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHelas3CellPapAlnRep2\ type bam\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_ctss_rev Hes3-gfpCardiomyocyticInduction_Day09Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_reverse 0 158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep2.CNhs13721.13348-143D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13348-143D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_tpm_rev Hes3-gfpCardiomyocyticInduction_Day09Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_reverse 1 158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep2.CNhs13721.13348-143D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13348-143D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CellShorttotalCiptapPlusRep2 IMR9 cell CIP + 2 bigWig 1.000000 3842329.000000 IMR90 CIP-TAP whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 158 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 CIP-TAP whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 cell CIP + 2\ subGroups view=PlusSignal cellType=t2IMR90 localization=CELL protocol=CIPTAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90CellShorttotalCiptapPlusRep2\ type bigWig 1.000000 3842329.000000\ wgEncodeSydhTfbsK562Atf106325StdSig K562 ATF1 Std bigWig 1.000000 34388.000000 K562 ATF1 Standard ChIP-seq Signal from ENCODE/SYDH 2 158 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ATF1 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 ATF1 Std\ subGroups view=Signal factor=ATF106325 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Atf106325StdSig\ type bigWig 1.000000 34388.000000\ wgEncodeAwgTfbsSydhK562Brf1UniPk K562 BRF1 narrowPeak K562 TFBS Uniform Peaks of BRF1 from ENCODE/Harvard/Analysis 1 158 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of BRF1 from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 BRF1\ subGroups tier=a10 cellType=a10K562 factor=BRF1 lab=Harvard\ track wgEncodeAwgTfbsSydhK562Brf1UniPk\ wgEncodeCshlLongRnaSeqK562NucleusPapPlusRawSigRep1 K562 nuc pA+ + 1 bigWig 1.000000 726550.000000 K562 nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 158 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel K562 nuc pA+ + 1\ subGroups view=PlusSignal cellType=t1K562 localization=NUCLEUS rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqK562NucleusPapPlusRawSigRep1\ type bigWig 1.000000 726550.000000\ wgEncodeBroadHistoneK562Suz12051317Sig K562 SUZ12 bigWig 0.040000 364.040009 K562 SUZ12 (05-1317) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 158 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 SUZ12 (05-1317) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 SUZ12\ subGroups view=Signal factor=SUZ12051317 cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562Suz12051317Sig\ type bigWig 0.040000 364.040009\ wgEncodeOpenChromChipLncapCtcfSigRep1 LNCaP CTCF DS bigWig 0.000000 8.868000 LNCaP CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 158 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel LNCaP CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel LNCaP CTCF DS\ subGroups view=SIG factor=CTCF cellType=t3LNCAP treatment=AANONE\ track wgEncodeOpenChromChipLncapCtcfSigRep1\ type bigWig 0.000000 8.868000\ wgEncodeUwDgfNhdfadPkV2 NHDF-Ad Pk narrowPeak NHDF-Ad DNaseI DGF Peaks from ENCODE/UW 0 158 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-Ad DNaseI DGF Peaks from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewPeaks off\ shortLabel NHDF-Ad Pk\ subGroups view=Peaks cellType=t3NHDFAD treatment=aNONE rep=rep1\ track wgEncodeUwDgfNhdfadPkV2\ type narrowPeak\ wgEncodeUwRepliSeqNhekValleysRep1 NHEK Vly 1 bed 9 NHEK Repli-seq Valleys Rep 1 from ENCODE/UW 0 158 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK Repli-seq Valleys Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewValleys off\ shortLabel NHEK Vly 1\ subGroups view=v3Valleys cellType=t3NHEK phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqNhekValleysRep1\ type bed 9\ wgEncodeHaibMethylRrbsPanisletsSitesRep1 PanIslets 1 bed 9 + PanIslets Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 158 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PanIslets Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel PanIslets 1\ subGroups obtainedBy=DUKE cellType=t3PANISLETS treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsPanisletsSitesRep1\ type bed 9 +\ wgEncodeGisRnaPetProstateCellPapMinusRawSigRep1 Pros cell pA+ - 1 bigWig 1.000000 47234.000000 Prostate whole cell polyA+ clone-based RNA PET Minus sig Rep 1 from ENCODE/GIS 2 158 0 0 0 127 127 127 0 0 0 expression 0 longLabel Prostate whole cell polyA+ clone-based RNA PET Minus sig Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewMinusRawSig off\ shortLabel Pros cell pA+ - 1\ subGroups view=v2MinusRawSignal cellType=cPROSTATE cloned=Based localization=cell rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetProstateCellPapMinusRawSigRep1\ type bigWig 1.000000 47234.000000\ wgEncodeUwAffyExonArraySkmcSimpleSignalRep2 SKMC 2 broadPeak SKMC Exon array Signal Rep 2 from ENCODE/UW 0 158 0 0 0 127 127 127 0 0 0 expression 1 longLabel SKMC Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel SKMC 2\ subGroups cellType=t3SKMC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArraySkmcSimpleSignalRep2\ type broadPeak\ wgEncodeUwHistoneAg09309H3k4me3StdRawRep2 AG09 H3K4M3 Sg 2 bigWig 1.000000 2062.000000 AG09309 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 159 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG09309 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG09 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3AG09309 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAg09309H3k4me3StdRawRep2\ type bigWig 1.000000 2062.000000\ wgEncodeUwDnaseGm04503RawRep1 GM04503 Sg 1 bigWig 1.000000 34082.000000 GM04503 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 159 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM04503 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel GM04503 Sg 1\ subGroups view=zRSig cellType=t3GM04503 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm04503RawRep1\ type bigWig 1.000000 34082.000000\ encTfChipPkENCFF721FTG GM12878 NR2C2 narrowPeak Transcription Factor ChIP-seq Peaks of NR2C2 in GM12878 from ENCODE 3 (ENCFF721FTG) 1 159 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of NR2C2 in GM12878 from ENCODE 3 (ENCFF721FTG)\ parent encTfChipPk off\ shortLabel GM12878 NR2C2\ subGroups cellType=GM12878 factor=NR2C2\ track encTfChipPkENCFF721FTG\ wgEncodeOpenChromDnaseGm19240BaseOverlapSignal GM19240 OS bigWig 0.000000 253.000000 GM19240 DNaseI HS Overlap Signal from ENCODE/Duke 2 159 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM19240 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel GM19240 OS\ subGroups view=SIGBO cellType=t3GM19240 treatment=zNONE\ track wgEncodeOpenChromDnaseGm19240BaseOverlapSignal\ type bigWig 0.000000 253.000000\ wgEncodeUwTfbsGm12873CtcfStdRawRep1 GM73 CTCF Sg 1 bigWig 1.000000 3714.000000 GM12873 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 159 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12873 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM73 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3GM12873 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12873CtcfStdRawRep1\ type bigWig 1.000000 3714.000000\ wgEncodeHaibTfbsGm12878Stat5asc74442V0422111PkRep1 GM78 STAT5A V11 1 broadPeak GM12878 STAT5A v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 159 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 STAT5A v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 STAT5A V11 1\ subGroups view=Peaks factor=STAT5ASC74442 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Stat5asc74442V0422111PkRep1\ type broadPeak\ wgEncodeRikenCageHepg2CytosolPamTssHmmV2 HepG cyto pA- bed 6 HepG2 cytosol polyA- CAGE TSS HMM from ENCODE/RIKEN 3 159 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 cytosol polyA- CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HepG cyto pA-\ subGroups view=TssHmm cellType=t2HEPG2 localization=cytosol rnaExtract=pAM rep=rep0 rank=rankP\ track wgEncodeRikenCageHepg2CytosolPamTssHmmV2\ type bed 6\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day09Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_forward 0 159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep3.CNhs13733.13360-143F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13360-143F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day09Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_forward 1 159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep3.CNhs13733.13360-143F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13360-143F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CellContigs IMR9 cell C bed 6 IMR90 whole cell small RNA-seq Contigs from ENCODE/CSHL 2 159 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel IMR9 cell C\ subGroups view=Contigs rep=Pooled cellType=t2IMR90 localization=CELL protocol=NONE rank=none\ track wgEncodeCshlShortRnaSeqImr90CellContigs\ type bed 6\ wgEncodeSydhTfbsK562Atf3StdPk K562 ATF3 Std narrowPeak K562 ATF3 Standard ChIP-seq Peaks from ENCODE/SYDH 3 159 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ATF3 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 ATF3 Std\ subGroups view=Peaks factor=ATF3 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Atf3StdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Brf2UniPk K562 BRF2 narrowPeak K562 TFBS Uniform Peaks of BRF2 from ENCODE/Harvard/Analysis 1 159 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of BRF2 from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 BRF2\ subGroups tier=a10 cellType=a10K562 factor=BRF2 lab=Harvard\ track wgEncodeAwgTfbsSydhK562Brf2UniPk\ wgEncodeBroadHistoneK562ControlStdSig K562 Input bigWig 0.040000 17321.439453 K562 Input Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 159 46 0 184 150 127 219 1 0 0 regulation 0 color 46,0,184\ longLabel K562 Input Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel K562 Input\ subGroups view=Signal factor=zCTRL cellType=t1K562 treatment=zNONE\ track wgEncodeBroadHistoneK562ControlStdSig\ type bigWig 0.040000 17321.439453\ wgEncodeCshlLongRnaSeqK562NucleusPapPlusRawSigRep2 K562 nuc pA+ + 2 bigWig 1.000000 545745.000000 K562 nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 159 46 0 184 150 127 219 0 0 0 expression 0 color 46,0,184\ longLabel K562 nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel K562 nuc pA+ + 2\ subGroups view=PlusSignal cellType=t1K562 localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqK562NucleusPapPlusRawSigRep2\ type bigWig 1.000000 545745.000000\ wgEncodeOpenChromChipLncapCtcfBaseOverlapSignalRep1 LNCaP CTCF OS bigWig 0.000000 2943.000000 LNCaP CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 159 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel LNCaP CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel LNCaP CTCF OS\ subGroups view=SIGBO factor=CTCF cellType=t3LNCAP treatment=AANONE\ track wgEncodeOpenChromChipLncapCtcfBaseOverlapSignalRep1\ type bigWig 0.000000 2943.000000\ pgAngrist Misha Angrist pgSnp Misha Angrist (Personal Genome Project) 0 159 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Misha Angrist (Personal Genome Project)\ origAssembly hg18\ parent pgSnpPGP\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel Misha Angrist\ subGroups view=D_PGP id=D_Angrist type=SNP\ track pgAngrist\ wgEncodeUwDgfNhdfadSig NHDF-Ad Sig bigWig 1.000000 25248.000000 NHDF-Ad DNaseI DGF Per-base Signal from ENCODE/UW 2 159 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHDF-Ad DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel NHDF-Ad Sig\ subGroups view=Signal cellType=t3NHDFAD treatment=aNONE rep=rep1\ track wgEncodeUwDgfNhdfadSig\ type bigWig 1.000000 25248.000000\ wgEncodeUwRepliSeqNhekWaveSignalRep1 NHEK Ws 1 bigWig -3.430146 80.768188 NHEK Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW 2 159 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK Repli-seq Wavelet-smoothed Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewWaveSignal off\ shortLabel NHEK Ws 1\ subGroups view=v4WaveSignal cellType=t3NHEK phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqNhekWaveSignalRep1\ type bigWig -3.430146 80.768188\ wgEncodeHaibMethylRrbsPanisletsSitesRep2 PanIslets 2 bed 9 + PanIslets Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 159 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PanIslets Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel PanIslets 2\ subGroups obtainedBy=DUKE cellType=t3PANISLETS treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsPanisletsSitesRep2\ type bed 9 +\ wgEncodeGisRnaPetProstateCellPapPlusRawSigRep1 Pros cell pA+ + 1 bigWig 1.000000 79623.000000 Prostate whole cell polyA+ clone-based RNA PET Plus signal Rep 1 from ENCODE/GIS 2 159 0 0 0 127 127 127 0 0 0 expression 0 longLabel Prostate whole cell polyA+ clone-based RNA PET Plus signal Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewPlusRawSig off\ shortLabel Pros cell pA+ + 1\ subGroups view=v2PlusRawSignal cellType=cPROSTATE cloned=Based localization=cell rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetProstateCellPapPlusRawSigRep1\ type bigWig 1.000000 79623.000000\ wgEncodeUwAffyExonArraySknmcSimpleSignalRep1 SK-N-MC 1 broadPeak SK-N-MC Exon-array Signal Rep 1 from ENCODE/UW 0 159 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-MC Exon-array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel SK-N-MC 1\ subGroups cellType=t3SKNMC rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArraySknmcSimpleSignalRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqA549CellLongnonpolyaAlnRep1 A549 cel pA- A 1 bam A549 whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 160 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel A549 cel pA- A 1\ subGroups view=Alignments cellType=t2A549 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqA549CellLongnonpolyaAlnRep1\ type bam\ wgEncodeBroadHistoneA549CtcfDex100nmPk A549 DEX CTCF broadPeak A549 DEX 100 nM CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 160 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 DEX 100 nM CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 DEX CTCF\ subGroups view=Peaks factor=CTCF cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549CtcfDex100nmPk\ type broadPeak\ wgEncodeUwHistoneAg09309InputStdRawRep1 AG09 In Sg 1 bigWig 1.000000 7173.000000 AG09309 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 160 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG09309 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG09 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3AG09309 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg09309InputStdRawRep1\ type bigWig 1.000000 7173.000000\ pgChurch George Church pgSnp George Church (Personal Genome Project) 0 160 0 0 0 127 127 127 0 0 0 varRep 1 longLabel George Church (Personal Genome Project)\ origAssembly hg18\ parent pgSnpPGP\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel George Church\ subGroups view=D_PGP id=D_Church type=SNP\ track pgChurch\ wgEncodeUwDnaseGm04503HotspotsRep2 GM04503 Ht 2 broadPeak GM04503 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 160 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM04503 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel GM04503 Ht 2\ subGroups view=Hot cellType=t3GM04503 rep=rep2 treatment=None\ track wgEncodeUwDnaseGm04503HotspotsRep2\ type broadPeak\ encTfChipPkENCFF810CEL GM12878 NR2F1 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F1 in GM12878 from ENCODE 3 (ENCFF810CEL) 1 160 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of NR2F1 in GM12878 from ENCODE 3 (ENCFF810CEL)\ parent encTfChipPk off\ shortLabel GM12878 NR2F1\ subGroups cellType=GM12878 factor=NR2F1\ track encTfChipPkENCFF810CEL\ wgEncodeOpenChromDnaseGm20000Pk GM20000 Pk narrowPeak GM20000 DNaseI HS Peaks from ENCODE/Duke 3 160 0 0 0 127 127 127 1 0 0 regulation 1 longLabel GM20000 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel GM20000 Pk\ subGroups view=Peaks cellType=t3GM20000 treatment=zNONE\ track wgEncodeOpenChromDnaseGm20000Pk\ type narrowPeak\ wgEncodeUwTfbsGm12873CtcfStdHotspotsRep2 GM73 CTCF Ht 2 broadPeak GM12873 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 160 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12873 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM73 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3GM12873 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12873CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsGm12878Stat5asc74442V0422111RawRep1 GM78 STAT5A V11 1 bigWig 0.141727 102.539001 GM12878 STAT5A v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 160 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 STAT5A v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 STAT5A V11 1\ subGroups view=RawSignal factor=STAT5ASC74442 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Stat5asc74442V0422111RawRep1\ type bigWig 0.141727 102.539001\ wgEncodeRikenCageHepg2CytosolPamPlusSignal HepG cyto pA- + 1 bigWig 0.040000 4464.319824 HepG2 cytosol polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 160 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 cytosol polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HepG cyto pA- + 1\ subGroups view=PlusRawSignal cellType=t2HEPG2 localization=cytosol rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageHepg2CytosolPamPlusSignal\ type bigWig 0.040000 4464.319824\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_ctss_rev Hes3-gfpCardiomyocyticInduction_Day09Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_reverse 0 160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep3.CNhs13733.13360-143F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13360-143F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_tpm_rev Hes3-gfpCardiomyocyticInduction_Day09Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_reverse 1 160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep3.CNhs13733.13360-143F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13360-143F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CellShorttotalMinusRep1 IMR9 cell - 1 bigWig 1.000000 4116483.000000 IMR90 whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 160 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 cell - 1\ subGroups view=MinusSignal cellType=t2IMR90 localization=CELL protocol=NONE rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90CellShorttotalMinusRep1\ type bigWig 1.000000 4116483.000000\ wgEncodeSydhTfbsK562Atf3StdSig K562 ATF3 Std bigWig 0.000000 15394.700195 K562 ATF3 Standard ChIP-seq Signal from ENCODE/SYDH 2 160 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ATF3 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 ATF3 Std\ subGroups view=Signal factor=ATF3 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Atf3StdSig\ type bigWig 0.000000 15394.700195\ wgEncodeAwgTfbsHaibK562Cbx3sc101004V0422111UniPk K562 CBX3 narrowPeak K562 TFBS Uniform Peaks of CBX3_(SC-101004) from ENCODE/HudsonAlpha/Analysis 1 160 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of CBX3_(SC-101004) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 CBX3\ subGroups tier=a10 cellType=a10K562 factor=CBX3 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Cbx3sc101004V0422111UniPk\ wgEncodeOpenChromChipLncapCtcfAndroPkRep1 LNCaP CTCF Pk narrowPeak LNCaP androgen CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 160 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel LNCaP androgen CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel LNCaP CTCF Pk\ subGroups view=Peaks factor=CTCF cellType=t3LNCAP treatment=ANDRO\ track wgEncodeOpenChromChipLncapCtcfAndroPkRep1\ type narrowPeak\ wgEncodeUwDgfNhdfadRaw NHDF-Ad Raw bigWig 1.000000 91896.000000 NHDF-Ad DNaseI DGF Raw Signal from ENCODE/UW 0 160 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHDF-Ad DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel NHDF-Ad Raw\ subGroups view=zRaw cellType=t3NHDFAD treatment=aNONE rep=rep1\ track wgEncodeUwDgfNhdfadRaw\ type bigWig 1.000000 91896.000000\ wgEncodeUwRepliSeqNhekSumSignalRep1 NHEK Sd 1 bigWig 1.000000 3234.000000 NHEK Repli-seq Summed Densities Rep 1 from ENCODE/UW 0 160 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK Repli-seq Summed Densities Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwRepliSeqViewSumSignal off\ shortLabel NHEK Sd 1\ subGroups view=v5SumSignal cellType=t3NHEK phase=zNONE rep=rep1\ track wgEncodeUwRepliSeqNhekSumSignalRep1\ type bigWig 1.000000 3234.000000\ wgEncodeHaibMethylRrbsBcpericardiumh12529nBiochainSitesRep1 Pericardium_BC 1 bed 9 + Pericardium BC H12529N Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 160 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Pericardium BC H12529N Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Pericardium_BC 1\ subGroups cellType=t3PERICARDIUMBCH12529N obtainedBy=BioChain treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBcpericardiumh12529nBiochainSitesRep1\ type bed 9 +\ wgEncodeGisRnaPetProstateCellPapAlnRep1 Pros cell pA+ A 1 bam Prostate whole cell polyA+ clone-based RNA PET Alignments Rep 1 from ENCODE/GIS 0 160 0 0 0 127 127 127 0 0 0 expression 1 longLabel Prostate whole cell polyA+ clone-based RNA PET Alignments Rep 1 from ENCODE/GIS\ parent wgEncodeGisRnaPetViewAlignments off\ shortLabel Pros cell pA+ A 1\ subGroups view=v3Alignments cellType=cPROSTATE cloned=Based localization=cell rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeGisRnaPetProstateCellPapAlnRep1\ type bam\ wgEncodeUwAffyExonArraySknmcSimpleSignalRep2 SK-N-MC 2 broadPeak SK-N-MC Exon-array Signal Rep 2 from ENCODE/UW 0 160 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-MC Exon-array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel SK-N-MC 2\ subGroups cellType=t3SKNMC rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArraySknmcSimpleSignalRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqA549CellLongnonpolyaAlnRep2 A549 cel pA- A 2 bam A549 whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 161 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel A549 cel pA- A 2\ subGroups view=Alignments cellType=t2A549 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqA549CellLongnonpolyaAlnRep2\ type bam\ wgEncodeBroadHistoneA549CtcfDex100nmSig A549 DEX CTCF bigWig 0.040000 711.840027 A549 DEX 100 nM CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 161 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 DEX 100 nM CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 DEX CTCF\ subGroups view=Signal factor=CTCF cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549CtcfDex100nmSig\ type bigWig 0.040000 711.840027\ wgEncodeUwHistoneAg09319H3k4me3StdHotspotsRep1 AG19 H3K4M3 Ht 1 broadPeak AG09319 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 161 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09319 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel AG19 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3AG09319 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg09319H3k4me3StdHotspotsRep1\ type broadPeak\ pgGatesJr Gates Jr pgSnp Henry Louis Gates Jr (Personal Genome Project) 0 161 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Henry Louis Gates Jr (Personal Genome Project)\ origAssembly hg18\ parent pgSnpPGP\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel Gates Jr\ subGroups view=D_PGP id=D_GatesJr type=SNP\ track pgGatesJr\ wgEncodeUwDnaseGm04503PkRep2 GM04503 Pk 2 narrowPeak GM04503 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 161 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM04503 DNaseI HS Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel GM04503 Pk 2\ subGroups view=Peaks cellType=t3GM04503 rep=rep2 treatment=None\ track wgEncodeUwDnaseGm04503PkRep2\ type narrowPeak\ encTfChipPkENCFF931XAL GM12878 NRF1 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in GM12878 from ENCODE 3 (ENCFF931XAL) 1 161 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in GM12878 from ENCODE 3 (ENCFF931XAL)\ parent encTfChipPk off\ shortLabel GM12878 NRF1\ subGroups cellType=GM12878 factor=NRF1\ track encTfChipPkENCFF931XAL\ wgEncodeOpenChromDnaseGm20000Sig GM20000 DS bigWig 0.000000 1.525900 GM20000 DNaseI HS Density Signal from ENCODE/Duke 2 161 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM20000 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel GM20000 DS\ subGroups view=SIG cellType=t3GM20000 treatment=zNONE\ track wgEncodeOpenChromDnaseGm20000Sig\ type bigWig 0.000000 1.525900\ wgEncodeUwTfbsGm12873CtcfStdPkRep2 GM73 CTCF Pk 2 narrowPeak GM12873 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 161 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12873 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM73 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3GM12873 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12873CtcfStdPkRep2\ type narrowPeak\ wgEncodeHaibTfbsGm12878Stat5asc74442V0422111PkRep2 GM78 STAT5A V11 2 broadPeak GM12878 STAT5A v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 161 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 STAT5A v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 STAT5A V11 2\ subGroups view=Peaks factor=STAT5ASC74442 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Stat5asc74442V0422111PkRep2\ type broadPeak\ wgEncodeRikenCageHepg2CytosolPamMinusSignal HepG cyto pA- - 1 bigWig 0.040000 4464.319824 HepG2 cytosol polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 161 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 cytosol polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HepG cyto pA- - 1\ subGroups view=MinusRawSignal cellType=t2HEPG2 localization=cytosol rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageHepg2CytosolPamMinusSignal\ type bigWig 0.040000 4464.319824\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day10Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_forward 0 161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep1.CNhs13662.13337-143C7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13337-143C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day10Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_forward 1 161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep1.CNhs13662.13337-143C7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13337-143C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CellShorttotalMinusRep2 IMR9 cell - 2 bigWig 1.000000 13289710.000000 IMR90 whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 161 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 cell - 2\ subGroups view=MinusSignal cellType=t2IMR90 localization=CELL protocol=NONE rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90CellShorttotalMinusRep2\ type bigWig 1.000000 13289710.000000\ wgEncodeSydhTfbsK562Bach1sc14700IggrabPk K562 Bach1 IgR narrowPeak K562 Bach1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 161 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Bach1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 Bach1 IgR\ subGroups view=Peaks factor=BACH1SC14700 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Bach1sc14700IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Ccnt2UniPk K562 CCNT2 narrowPeak K562 TFBS Uniform Peaks of CCNT2 from ENCODE/Harvard/Analysis 1 161 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of CCNT2 from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 CCNT2\ subGroups tier=a10 cellType=a10K562 factor=CCNT2 lab=Harvard\ track wgEncodeAwgTfbsSydhK562Ccnt2UniPk\ wgEncodeOpenChromChipLncapCtcfAndroSigRep1 LNCaP CTCF DS bigWig 0.000000 5.611100 LNCaP androgen CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 161 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel LNCaP androgen CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel LNCaP CTCF DS\ subGroups view=SIG factor=CTCF cellType=t3LNCAP treatment=ANDRO\ track wgEncodeOpenChromChipLncapCtcfAndroSigRep1\ type bigWig 0.000000 5.611100\ wgEncodeUwDgfNhdfneoHotspots NHDF-neo Hot broadPeak NHDF-neo DNaseI DGF Hotspots from ENCODE/UW 0 161 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel NHDF-neo Hot\ subGroups view=Hotspots cellType=t3NHDFNEO treatment=aNONE rep=rep1\ track wgEncodeUwDgfNhdfneoHotspots\ type broadPeak\ wgEncodeHaibMethylRrbsBcpericardiumh12529nBiochainSitesRep2 Pericardium_BC 2 bed 9 + Pericardium BC H12529N Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 161 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Pericardium BC H12529N Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Pericardium_BC 2\ subGroups cellType=t3PERICARDIUMBCH12529N obtainedBy=BioChain treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBcpericardiumh12529nBiochainSitesRep2\ type bed 9 +\ wgEncodeUwAffyExonArraySknshraSimpleSignalRep1 SK-N-SH_RA 1 broadPeak SK-N-SH_RA Exon array Signal Rep 1 from ENCODE/UW 0 161 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH_RA Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel SK-N-SH_RA 1\ subGroups cellType=t3SKNSHRA rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArraySknshraSimpleSignalRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqA549CellPamContigs A549 cel pA- C bed 6 + A549 whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 162 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel A549 cel pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2A549 localization=CELL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqA549CellPamContigs\ type bed 6 +\ wgEncodeBroadHistoneA549CtcfEtoh02Pk A549 EtOH CTCF broadPeak A549 EtOH 0.02% CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 162 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 EtOH 0.02% CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 EtOH CTCF\ subGroups view=Peaks factor=CTCF cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549CtcfEtoh02Pk\ type broadPeak\ wgEncodeUwHistoneAg09319H3k4me3StdPkRep1 AG19 H3K4M3 Pk 1 narrowPeak AG09319 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 162 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09319 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel AG19 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3AG09319 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg09319H3k4me3StdPkRep1\ type narrowPeak\ pgGatesSr Gates Sr pgSnp Henry Louis Gates Sr (Personal Genome Project) 0 162 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Henry Louis Gates Sr (Personal Genome Project)\ origAssembly hg18\ parent pgSnpPGP\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel Gates Sr\ subGroups view=D_PGP id=D_GatesSr type=SNP\ track pgGatesSr\ wgEncodeUwDnaseGm04503RawRep2 GM04503 Sg 2 bigWig 1.000000 23104.000000 GM04503 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 162 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM04503 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel GM04503 Sg 2\ subGroups view=zRSig cellType=t3GM04503 rep=rep2 treatment=None\ track wgEncodeUwDnaseGm04503RawRep2\ type bigWig 1.000000 23104.000000\ encTfChipPkENCFF199FYD GM12878 PAX5 1 narrowPeak Transcription Factor ChIP-seq Peaks of PAX5 in GM12878 from ENCODE 3 (ENCFF199FYD) 1 162 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of PAX5 in GM12878 from ENCODE 3 (ENCFF199FYD)\ parent encTfChipPk off\ shortLabel GM12878 PAX5 1\ subGroups cellType=GM12878 factor=PAX5\ track encTfChipPkENCFF199FYD\ wgEncodeOpenChromDnaseGm20000BaseOverlapSignal GM20000 OS bigWig 0.000000 231.000000 GM20000 DNaseI HS Overlap Signal from ENCODE/Duke 2 162 0 0 0 127 127 127 1 0 0 regulation 0 longLabel GM20000 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel GM20000 OS\ subGroups view=SIGBO cellType=t3GM20000 treatment=zNONE\ track wgEncodeOpenChromDnaseGm20000BaseOverlapSignal\ type bigWig 0.000000 231.000000\ wgEncodeUwTfbsGm12873CtcfStdRawRep2 GM73 CTCF Sg 2 bigWig 1.000000 4813.000000 GM12873 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 162 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12873 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM73 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3GM12873 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12873CtcfStdRawRep2\ type bigWig 1.000000 4813.000000\ wgEncodeHaibTfbsGm12878Stat5asc74442V0422111RawRep2 GM78 STAT5A V11 2 bigWig 0.143053 134.505997 GM12878 STAT5A v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 162 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 STAT5A v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 STAT5A V11 2\ subGroups view=RawSignal factor=STAT5ASC74442 cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Stat5asc74442V0422111RawRep2\ type bigWig 0.143053 134.505997\ wgEncodeRikenCageHepg2CytosolPamAln HepG cyto pA- A 1 bam HepG2 cytosol polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN 0 162 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 cytosol polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HepG cyto pA- A 1\ subGroups view=Alignments cellType=t2HEPG2 localization=cytosol rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageHepg2CytosolPamAln\ type bam\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_ctss_rev Hes3-gfpCardiomyocyticInduction_Day10Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_reverse 0 162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep1.CNhs13662.13337-143C7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13337-143C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_tpm_rev Hes3-gfpCardiomyocyticInduction_Day10Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_reverse 1 162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep1.CNhs13662.13337-143C7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13337-143C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CellShorttotalPlusRep1 IMR9 cell + 1 bigWig 1.000000 3737667.000000 IMR90 whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 162 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 cell + 1\ subGroups view=PlusSignal cellType=t2IMR90 localization=CELL protocol=NONE rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90CellShorttotalPlusRep1\ type bigWig 1.000000 3737667.000000\ wgEncodeSydhTfbsK562Bach1sc14700IggrabSig K562 Bach1 IgR bigWig 1.000000 213673.000000 K562 Bach1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 162 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Bach1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 Bach1 IgR\ subGroups view=Signal factor=BACH1SC14700 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Bach1sc14700IggrabSig\ type bigWig 1.000000 213673.000000\ wgEncodeAwgTfbsHaibK562Cebpbsc150V0422111UniPk K562 CEBPB narrowPeak K562 TFBS Uniform Peaks of CEBPB_(SC-150) from ENCODE/HudsonAlpha/Analysis 1 162 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of CEBPB_(SC-150) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 CEBPB\ subGroups tier=a10 cellType=a10K562 factor=CEBPB lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Cebpbsc150V0422111UniPk\ wgEncodeOpenChromChipLncapCtcfAndroBaseOverlapSignalRep1 LNCaP CTCF OS bigWig 0.000000 2604.000000 LNCaP androgen CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 162 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel LNCaP androgen CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel LNCaP CTCF OS\ subGroups view=SIGBO factor=CTCF cellType=t3LNCAP treatment=ANDRO\ track wgEncodeOpenChromChipLncapCtcfAndroBaseOverlapSignalRep1\ type bigWig 0.000000 2604.000000\ wgEncodeUwDgfNhdfneoPk NHDF-neo Pk narrowPeak NHDF-neo DNaseI DGF Peaks from ENCODE/UW 0 162 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel NHDF-neo Pk\ subGroups view=Peaks cellType=t3NHDFNEO treatment=aNONE rep=rep1\ track wgEncodeUwDgfNhdfneoPk\ type narrowPeak\ wgEncodeHaibMethylRrbsPfsk1HaibSitesRep1 PFSK-1 1 bed 9 + PFSK-1 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 162 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PFSK-1 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel PFSK-1 1\ subGroups cellType=t3PFSK1 obtainedBy=HAIB treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsPfsk1HaibSitesRep1\ type bed 9 +\ wgEncodeUwAffyExonArraySknshraSimpleSignalRep2 SK-N-SH_RA 2 broadPeak SK-N-SH_RA Exon array Signal Rep 2 from ENCODE/UW 0 162 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH_RA Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel SK-N-SH_RA 2\ subGroups cellType=t3SKNSHRA rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArraySknshraSimpleSignalRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqA549CellPamJunctions A549 cel pA- J bed 6 + A549 whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 163 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel A549 cel pA- J\ subGroups view=Junctions cellType=t2A549 localization=CELL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqA549CellPamJunctions\ type bed 6 +\ wgEncodeBroadHistoneA549CtcfEtoh02Sig A549 EtOH CTCF bigWig 0.040000 722.280029 A549 EtOH 0.02% CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 163 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 EtOH 0.02% CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 EtOH CTCF\ subGroups view=Signal factor=CTCF cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549CtcfEtoh02Sig\ type bigWig 0.040000 722.280029\ wgEncodeUwHistoneAg09319H3k4me3StdRawRep1 AG19 H3K4M3 Sg 1 bigWig 1.000000 3182.000000 AG09319 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 163 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG09319 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG19 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3AG09319 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg09319H3k4me3StdRawRep1\ type bigWig 1.000000 3182.000000\ wgEncodeUwDnaseGm04504HotspotsRep1 GM04504 Ht 1 broadPeak GM04504 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 163 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM04504 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel GM04504 Ht 1\ subGroups view=Hot cellType=t3GM04504 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm04504HotspotsRep1\ type broadPeak\ encTfChipPkENCFF339KUO GM12878 PAX5 2 narrowPeak Transcription Factor ChIP-seq Peaks of PAX5 in GM12878 from ENCODE 3 (ENCFF339KUO) 1 163 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of PAX5 in GM12878 from ENCODE 3 (ENCFF339KUO)\ parent encTfChipPk off\ shortLabel GM12878 PAX5 2\ subGroups cellType=GM12878 factor=PAX5\ track encTfChipPkENCFF339KUO\ wgEncodeUwTfbsGm12873CtcfStdHotspotsRep3 GM73 CTCF Ht 3 broadPeak GM12873 CTCF TFBS ChIP-seq Hotspots 3 from ENCODE/UW 2 163 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12873 CTCF TFBS ChIP-seq Hotspots 3 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM73 CTCF Ht 3\ subGroups view=Hot factor=CTCF cellType=t3GM12873 rep=rep3 treatment=aNone\ track wgEncodeUwTfbsGm12873CtcfStdHotspotsRep3\ type broadPeak\ wgEncodeHaibTfbsGm12878Taf1Pcr1xPkRep1 GM78 TAF1 PCR1 1 broadPeak GM12878 TAF1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 163 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TAF1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 TAF1 PCR1 1\ subGroups view=Peaks factor=TAF1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Taf1Pcr1xPkRep1\ type broadPeak\ wgEncodeOpenChromDnaseH7esPk H7hESC Pk narrowPeak H7-hESC DNaseI HS Peaks from ENCODE/Duke 3 163 0 0 0 127 127 127 1 0 0 regulation 1 longLabel H7-hESC DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel H7hESC Pk\ subGroups view=Peaks cellType=t3H7HESC treatment=zNONE\ track wgEncodeOpenChromDnaseH7esPk\ type narrowPeak\ wgEncodeRikenCageHepg2CytosolPapTssHmm HepG cyto pA+ bed 6 HepG2 cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 163 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HepG cyto pA+\ subGroups view=TssHmm cellType=t2HEPG2 localization=cytosol rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHepg2CytosolPapTssHmm\ type bed 6\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day10Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_forward 0 163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep2.CNhs13722.13349-143E1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13349-143E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day10Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_forward 1 163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep2.CNhs13722.13349-143E1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13349-143E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CellShorttotalPlusRep2 IMR9 cell + 2 bigWig 1.000000 8640129.000000 IMR90 whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 163 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 cell + 2\ subGroups view=PlusSignal cellType=t2IMR90 localization=CELL protocol=NONE rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90CellShorttotalPlusRep2\ type bigWig 1.000000 8640129.000000\ wgEncodeSydhTfbsK562Bdp1StdPk K562 BDP1 Std narrowPeak K562 BDP1 Standard ChIP-seq Peaks from ENCODE/SYDH 3 163 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 BDP1 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 BDP1 Std\ subGroups view=Peaks factor=BDP1 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Bdp1StdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562CebpbIggrabUniPk K562 CEBPB s narrowPeak K562 TFBS Uniform Peaks of CEBPB from ENCODE/Stanford/Analysis 1 163 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of CEBPB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 CEBPB s\ subGroups tier=a10 cellType=a10K562 factor=CEBPB lab=Stanford\ track wgEncodeAwgTfbsSydhK562CebpbIggrabUniPk\ wgEncodeOpenChromChipLncapInputSig LNCaP Input DS bigWig 0.000000 5.800100 LNCaP Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 163 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel LNCaP Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel LNCaP Input DS\ subGroups view=SIG factor=zCTRL cellType=t3LNCAP treatment=AANONE\ track wgEncodeOpenChromChipLncapInputSig\ type bigWig 0.000000 5.800100\ wgEncodeUwDgfNhdfneoSig NHDF-neo Sig bigWig 1.000000 90640.000000 NHDF-neo DNaseI DGF Per-base Signal from ENCODE/UW 2 163 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHDF-neo DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel NHDF-neo Sig\ subGroups view=Signal cellType=t3NHDFNEO treatment=aNONE rep=rep1\ track wgEncodeUwDgfNhdfneoSig\ type bigWig 1.000000 90640.000000\ wgEncodeHaibMethylRrbsPfsk1HaibSitesRep2 PFSK-1 2 bed 9 + PFSK-1 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 163 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PFSK-1 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel PFSK-1 2\ subGroups cellType=t3PFSK1 obtainedBy=HAIB treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsPfsk1HaibSitesRep2\ type bed 9 +\ pgGill Rosalynn Gill pgSnp Rosalynn Gill (Personal Genome Project) 0 163 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Rosalynn Gill (Personal Genome Project)\ origAssembly hg18\ parent pgSnpPGP\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel Rosalynn Gill\ subGroups view=D_PGP id=D_Gill type=SNP\ track pgGill\ wgEncodeUwAffyExonArrayTh1SimpleSignalRep1 Th1 1 broadPeak Th1 Exon array Signal Rep 1 from ENCODE/UW 0 163 0 0 0 127 127 127 0 0 0 expression 1 longLabel Th1 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel Th1 1\ subGroups cellType=t3TH1 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayTh1SimpleSignalRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqA549CellLongnonpolyaMinusRawSigRep1 A549 cel pA- - 1 bigWig 1.000000 1483709.000000 A549 whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 164 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel A549 cel pA- - 1\ subGroups view=MinusSignal cellType=t2A549 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqA549CellLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 1483709.000000\ wgEncodeBroadHistoneA549H2azDex100nmPk A549 DEX H2A.Z broadPeak A549 DEX 100 nM H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 164 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 DEX 100 nM H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 DEX H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549H2azDex100nmPk\ type broadPeak\ wgEncodeUwHistoneAg09319H3k4me3StdHotspotsRep2 AG19 H3K4M3 Ht 2 broadPeak AG09319 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 164 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09319 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel AG19 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3AG09319 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAg09319H3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseGm04504PkRep1 GM04504 Pk 1 narrowPeak GM04504 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 164 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM04504 DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel GM04504 Pk 1\ subGroups view=Peaks cellType=t3GM04504 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm04504PkRep1\ type narrowPeak\ encTfChipPkENCFF455YHJ GM12878 PAX8 narrowPeak Transcription Factor ChIP-seq Peaks of PAX8 in GM12878 from ENCODE 3 (ENCFF455YHJ) 1 164 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of PAX8 in GM12878 from ENCODE 3 (ENCFF455YHJ)\ parent encTfChipPk off\ shortLabel GM12878 PAX8\ subGroups cellType=GM12878 factor=PAX8\ track encTfChipPkENCFF455YHJ\ wgEncodeUwTfbsGm12873CtcfStdPkRep3 GM73 CTCF Pk 3 narrowPeak GM12873 CTCF TFBS ChIP-seq Peaks 3 from ENCODE/UW 3 164 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12873 CTCF TFBS ChIP-seq Peaks 3 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM73 CTCF Pk 3\ subGroups view=Peaks factor=CTCF cellType=t3GM12873 rep=rep3 treatment=aNone\ track wgEncodeUwTfbsGm12873CtcfStdPkRep3\ type narrowPeak\ wgEncodeHaibTfbsGm12878Taf1Pcr1xRawRep1 GM78 TAF1 PCR1 1 bigWig 0.215867 165.570007 GM12878 TAF1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 164 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 TAF1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 TAF1 PCR1 1\ subGroups view=RawSignal factor=TAF1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Taf1Pcr1xRawRep1\ type bigWig 0.215867 165.570007\ wgEncodeOpenChromDnaseH7esSig H7hESC DS bigWig 0.000000 1.355700 H7-hESC DNaseI HS Density Signal from ENCODE/Duke 2 164 0 0 0 127 127 127 1 0 0 regulation 0 longLabel H7-hESC DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel H7hESC DS\ subGroups view=SIG cellType=t3H7HESC treatment=zNONE\ track wgEncodeOpenChromDnaseH7esSig\ type bigWig 0.000000 1.355700\ wgEncodeRikenCageHepg2CytosolPapPlusSignalRep1 HepG cyto pA+ + 1 bigWig 0.060000 166794.718750 HepG2 cytosol polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 164 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 cytosol polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HepG cyto pA+ + 1\ subGroups view=PlusRawSignal cellType=t2HEPG2 localization=cytosol rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHepg2CytosolPapPlusSignalRep1\ type bigWig 0.060000 166794.718750\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_ctss_rev Hes3-gfpCardiomyocyticInduction_Day10Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_reverse 0 164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep2.CNhs13722.13349-143E1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13349-143E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_tpm_rev Hes3-gfpCardiomyocyticInduction_Day10Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_reverse 1 164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep2.CNhs13722.13349-143E1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13349-143E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CellTapContigs IMR9 cell TAP C bed 6 IMR90 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 164 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel IMR9 cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t2IMR90 localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqImr90CellTapContigs\ type bed 6\ wgEncodeSydhTfbsK562Bdp1StdSig K562 BDP1 Std bigWig 0.000000 14120.299805 K562 BDP1 Standard ChIP-seq Signal from ENCODE/SYDH 2 164 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 BDP1 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 BDP1 Std\ subGroups view=Signal factor=BDP1 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Bdp1StdSig\ type bigWig 0.000000 14120.299805\ wgEncodeAwgTfbsBroadK562Chd1a301218aUniPk K562 CHD1 narrowPeak K562 TFBS Uniform Peaks of CHD1_(A301-218A) from ENCODE/Broad/Analysis 1 164 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of CHD1_(A301-218A) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 CHD1\ subGroups tier=a10 cellType=a10K562 factor=CHD1 lab=Broad\ track wgEncodeAwgTfbsBroadK562Chd1a301218aUniPk\ wgEncodeOpenChromChipLungocCtcfPkRep1 Lung CTCF Pk narrowPeak Lung OC CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 164 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Lung OC CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel Lung CTCF Pk\ subGroups view=Peaks factor=CTCF cellType=t3LUNGOC treatment=AANONE\ track wgEncodeOpenChromChipLungocCtcfPkRep1\ type narrowPeak\ wgEncodeUwDgfNhdfneoRaw NHDF-neo Raw bigWig 1.000000 314874.000000 NHDF-neo DNaseI DGF Raw Signal from ENCODE/UW 0 164 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHDF-neo DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel NHDF-neo Raw\ subGroups view=zRaw cellType=t3NHDFNEO treatment=aNONE rep=rep1\ track wgEncodeUwDgfNhdfneoRaw\ type bigWig 1.000000 314874.000000\ wgEncodeHaibMethylRrbsBcplacentauhn00189BiochainSitesRep1 Placenta_BC 1 bed 9 + Placenta BC UHN00189 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 164 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Placenta BC UHN00189 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Placenta_BC 1\ subGroups cellType=t3PLACENTABCUHN00189 obtainedBy=BioChain treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBcplacentauhn00189BiochainSitesRep1\ type bed 9 +\ pgVenter Venter pgSnp J. Craig Venter - Published Method 1, Variant in Original Form (JCVI) 0 164 128 0 128 191 127 191 0 0 0 varRep 1 color 128,0,128\ longLabel J. Craig Venter - Published Method 1, Variant in Original Form (JCVI)\ origAssembly hg18\ parent pgSnp1off\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel Venter\ subGroups view=N_1off id=NL_Venter type=SNP\ track pgVenter\ wgEncodeUwAffyExonArrayWerirb1SimpleSignalRep1 WERI-Rb-1 1 broadPeak WERI-Rb-1 Exon-array Signal Rep 1 from ENCODE/UW 0 164 0 0 0 127 127 127 0 0 0 expression 1 longLabel WERI-Rb-1 Exon-array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel WERI-Rb-1 1\ subGroups cellType=t3WERIRB1 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayWerirb1SimpleSignalRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqA549CellLongnonpolyaMinusRawSigRep2 A549 cel pA- - 2 bigWig 1.000000 1209428.000000 A549 whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 165 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel A549 cel pA- - 2\ subGroups view=MinusSignal cellType=t2A549 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqA549CellLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 1209428.000000\ wgEncodeBroadHistoneA549H2azDex100nmSig A549 DEX H2A.Z bigWig 0.040000 743.719971 A549 DEX 100 nM H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 165 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 DEX 100 nM H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 DEX H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549H2azDex100nmSig\ type bigWig 0.040000 743.719971\ wgEncodeUwHistoneAg09319H3k4me3StdPkRep2 AG19 H3K4M3 Pk 2 narrowPeak AG09319 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 165 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09319 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel AG19 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3AG09319 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAg09319H3k4me3StdPkRep2\ type narrowPeak\ wgEncodeUwDnaseGm04504RawRep1 GM04504 Sg 1 bigWig 1.000000 23185.000000 GM04504 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 165 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM04504 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel GM04504 Sg 1\ subGroups view=zRSig cellType=t3GM04504 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm04504RawRep1\ type bigWig 1.000000 23185.000000\ encTfChipPkENCFF717IXP GM12878 PBX3 narrowPeak Transcription Factor ChIP-seq Peaks of PBX3 in GM12878 from ENCODE 3 (ENCFF717IXP) 1 165 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of PBX3 in GM12878 from ENCODE 3 (ENCFF717IXP)\ parent encTfChipPk off\ shortLabel GM12878 PBX3\ subGroups cellType=GM12878 factor=PBX3\ track encTfChipPkENCFF717IXP\ wgEncodeUwTfbsGm12873CtcfStdRawRep3 GM73 CTCF Sg 3 bigWig 1.000000 7017.000000 GM12873 CTCF TFBS ChIP-seq Raw Signal 3 from ENCODE/UW 2 165 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12873 CTCF TFBS ChIP-seq Raw Signal 3 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM73 CTCF Sg 3\ subGroups view=zRSig factor=CTCF cellType=t3GM12873 rep=rep3 treatment=aNone\ track wgEncodeUwTfbsGm12873CtcfStdRawRep3\ type bigWig 1.000000 7017.000000\ wgEncodeHaibTfbsGm12878Taf1Pcr1xPkRep2 GM78 TAF1 PCR1 2 broadPeak GM12878 TAF1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 165 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TAF1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 TAF1 PCR1 2\ subGroups view=Peaks factor=TAF1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Taf1Pcr1xPkRep2\ type broadPeak\ wgEncodeOpenChromDnaseH7esBaseOverlapSignal H7hESC OS bigWig 0.000000 363.000000 H7-hESC DNaseI HS Overlap Signal from ENCODE/Duke 2 165 0 0 0 127 127 127 1 0 0 regulation 0 longLabel H7-hESC DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel H7hESC OS\ subGroups view=SIGBO cellType=t3H7HESC treatment=zNONE\ track wgEncodeOpenChromDnaseH7esBaseOverlapSignal\ type bigWig 0.000000 363.000000\ wgEncodeRikenCageHepg2CytosolPapPlusSignalRep2 HepG cyto pA+ + 2 bigWig 0.050000 77987.828125 HepG2 cytosol polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 165 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 cytosol polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HepG cyto pA+ + 2\ subGroups view=PlusRawSignal cellType=t2HEPG2 localization=cytosol rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHepg2CytosolPapPlusSignalRep2\ type bigWig 0.050000 77987.828125\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day10Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_forward 0 165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep3.CNhs13734.13361-143F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13361-143F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day10Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_forward 1 165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep3.CNhs13734.13361-143F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13361-143F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CellShorttotalTapMinusRep1 IMR9 cell TAP - 1 bigWig 1.000000 5355623.000000 IMR90 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 165 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 cell TAP - 1\ subGroups view=MinusSignal cellType=t2IMR90 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90CellShorttotalTapMinusRep1\ type bigWig 1.000000 5355623.000000\ wgEncodeSydhTfbsK562Bhlhe40nb100IggrabPk K562 BHL4 IgR narrowPeak K562 BHLHE40 NB100 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 165 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 BHLHE40 NB100 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 BHL4 IgR\ subGroups view=Peaks factor=BHLHE40NB100 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Bhlhe40nb100IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Chd2ab68301IggrabUniPk K562 CHD2 narrowPeak K562 TFBS Uniform Peaks of CHD2_(AB68301) from ENCODE/Stanford/Analysis 1 165 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of CHD2_(AB68301) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 CHD2\ subGroups tier=a10 cellType=a10K562 factor=CHD2 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Chd2ab68301IggrabUniPk\ wgEncodeOpenChromChipLungocCtcfSigRep1 Lung CTCF DS bigWig 0.000000 10.782000 Lung OC CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 165 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Lung OC CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Lung CTCF DS\ subGroups view=SIG factor=CTCF cellType=t3LUNGOC treatment=AANONE\ track wgEncodeOpenChromChipLungocCtcfSigRep1\ type bigWig 0.000000 10.782000\ wgEncodeUwDgfNhlfHotspots NHLF Hot broadPeak NHLF DNaseI DGF Hotspots from ENCODE/UW 0 165 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHLF DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel NHLF Hot\ subGroups view=Hotspots cellType=t3NHLF treatment=aNONE rep=rep1\ track wgEncodeUwDgfNhlfHotspots\ type broadPeak\ wgEncodeHaibMethylRrbsBcplacentauhn00189BiochainSitesRep2 Placenta_BC 2 bed 9 + Placenta BC UHN00189 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 165 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Placenta BC UHN00189 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Placenta_BC 2\ subGroups cellType=t3PLACENTABCUHN00189 obtainedBy=BioChain treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBcplacentauhn00189BiochainSitesRep2\ type bed 9 +\ pgWatson Watson pgSnp James Watson (CSHL) 0 165 153 0 0 204 127 127 0 0 0 varRep 1 color 153,0,0\ longLabel James Watson (CSHL)\ origAssembly hg18\ parent pgSnp1off\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel Watson\ subGroups view=N_1off id=NM_Watson type=SNP\ track pgWatson\ wgEncodeUwAffyExonArrayWi38SimpleSignalRep1 WI-38 1 broadPeak WI-38 Exon array Signal Rep 1 from ENCODE/UW 0 165 0 0 0 127 127 127 0 0 0 expression 1 longLabel WI-38 Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel WI-38 1\ subGroups cellType=t3WI38 rep=rep1 treatment=aNone\ track wgEncodeUwAffyExonArrayWi38SimpleSignalRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqA549CellLongnonpolyaPlusRawSigRep1 A549 cel pA- + 1 bigWig 1.000000 6539260.000000 A549 whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 166 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel A549 cel pA- + 1\ subGroups view=PlusSignal cellType=t2A549 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqA549CellLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 6539260.000000\ wgEncodeBroadHistoneA549H2azEtoh02Pk A549 EtOH H2A.Z broadPeak A549 EtOH 0.02% H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 166 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 EtOH 0.02% H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 EtOH H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H2azEtoh02Pk\ type broadPeak\ wgEncodeUwHistoneAg09319H3k4me3StdRawRep2 AG19 H3K4M3 Sg 2 bigWig 1.000000 2278.000000 AG09319 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 166 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG09319 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG19 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3AG09319 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAg09319H3k4me3StdRawRep2\ type bigWig 1.000000 2278.000000\ wgEncodeUwDnaseGm04504HotspotsRep2 GM04504 Ht 2 broadPeak GM04504 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 166 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM04504 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel GM04504 Ht 2\ subGroups view=Hot cellType=t3GM04504 rep=rep2 treatment=None\ track wgEncodeUwDnaseGm04504HotspotsRep2\ type broadPeak\ encTfChipPkENCFF020GMZ GM12878 PKNOX1 narrowPeak Transcription Factor ChIP-seq Peaks of PKNOX1 in GM12878 from ENCODE 3 (ENCFF020GMZ) 1 166 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of PKNOX1 in GM12878 from ENCODE 3 (ENCFF020GMZ)\ parent encTfChipPk off\ shortLabel GM12878 PKNOX1\ subGroups cellType=GM12878 factor=PKNOX1\ track encTfChipPkENCFF020GMZ\ wgEncodeUwTfbsGm12873InputStdRawRep1 GM73 In Sg 1 bigWig 1.000000 8562.000000 GM12873 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 166 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12873 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM73 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3GM12873 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12873InputStdRawRep1\ type bigWig 1.000000 8562.000000\ wgEncodeHaibTfbsGm12878Taf1Pcr1xRawRep2 GM78 TAF1 PCR1 2 bigWig 0.152062 165.367004 GM12878 TAF1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 166 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 TAF1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 TAF1 PCR1 2\ subGroups view=RawSignal factor=TAF1 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Taf1Pcr1xRawRep2\ type bigWig 0.152062 165.367004\ wgEncodeOpenChromDnaseH9esPk H9ES Pk narrowPeak H9ES DNaseI HS Peaks from ENCODE/Duke 3 166 0 0 0 127 127 127 1 0 0 regulation 1 longLabel H9ES DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel H9ES Pk\ subGroups view=Peaks cellType=t3H9ES treatment=zNONE\ track wgEncodeOpenChromDnaseH9esPk\ type narrowPeak\ wgEncodeRikenCageHepg2CytosolPapMinusSignalRep1 HepG cyto pA+ - 1 bigWig 0.060000 6386.109863 HepG2 cytosol polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 166 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 cytosol polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HepG cyto pA+ - 1\ subGroups view=MinusRawSignal cellType=t2HEPG2 localization=cytosol rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHepg2CytosolPapMinusSignalRep1\ type bigWig 0.060000 6386.109863\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_ctss_rev Hes3-gfpCardiomyocyticInduction_Day10Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_reverse 0 166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep3.CNhs13734.13361-143F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13361-143F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_tpm_rev Hes3-gfpCardiomyocyticInduction_Day10Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_reverse 1 166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep3.CNhs13734.13361-143F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13361-143F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CellShorttotalTapMinusRep2 IMR9 cell TAP - 2 bigWig 1.000000 8596151.000000 IMR90 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 166 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 cell TAP - 2\ subGroups view=MinusSignal cellType=t2IMR90 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90CellShorttotalTapMinusRep2\ type bigWig 1.000000 8596151.000000\ wgEncodeSydhTfbsK562Bhlhe40nb100IggrabSig K562 BHL4 IgR bigWig 1.000000 18479.000000 K562 BHLHE40 NB100 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 166 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 BHLHE40 NB100 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 BHL4 IgR\ subGroups view=Signal factor=BHLHE40NB100 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Bhlhe40nb100IggrabSig\ type bigWig 1.000000 18479.000000\ wgEncodeAwgTfbsBroadK562CtcfUniPk K562 CTCF b narrowPeak K562 TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis 1 166 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 CTCF b\ subGroups tier=a10 cellType=a10K562 factor=CTCF lab=Broad\ track wgEncodeAwgTfbsBroadK562CtcfUniPk\ wgEncodeOpenChromChipLungocCtcfBaseOverlapSignalRep1 Lung CTCF OS bigWig 0.000000 1048.000000 Lung OC CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 166 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Lung OC CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel Lung CTCF OS\ subGroups view=SIGBO factor=CTCF cellType=t3LUNGOC treatment=AANONE\ track wgEncodeOpenChromChipLungocCtcfBaseOverlapSignalRep1\ type bigWig 0.000000 1048.000000\ wgEncodeUwDgfNhlfPk NHLF Pk narrowPeak NHLF DNaseI DGF Peaks from ENCODE/UW 0 166 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHLF DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel NHLF Pk\ subGroups view=Peaks cellType=t3NHLF treatment=aNONE rep=rep1\ track wgEncodeUwDgfNhlfPk\ type narrowPeak\ wgEncodeHaibMethylRrbsPrecUwSitesRep1 PrEC 1 bed 9 + PrEC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 166 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PrEC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel PrEC 1\ subGroups cellType=t3PREC obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsPrecUwSitesRep1\ type bed 9 +\ wgEncodeUwAffyExonArrayWi38OhtamSimpleSignalRep1 WI-38 tam 1 broadPeak WI-38 (tamoxifen) Exon array Signal Rep 1 from ENCODE/UW 0 166 0 0 0 127 127 127 0 0 0 expression 1 longLabel WI-38 (tamoxifen) Exon array Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel WI-38 tam 1\ subGroups cellType=t3WI38 rep=rep1 treatment=OHTAM\ track wgEncodeUwAffyExonArrayWi38OhtamSimpleSignalRep1\ type broadPeak\ pgYoruban3 YRI NA18507 pgSnp YRI NA18507 (Illumina Cambridge/Solexa, SNPs called by PSU) 0 166 128 0 128 191 127 191 0 0 0 varRep 1 color 128,0,128\ longLabel YRI NA18507 (Illumina Cambridge/Solexa, SNPs called by PSU)\ origAssembly hg18\ parent pgSnp1off\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel YRI NA18507\ subGroups view=N_1off id=NN_18507 type=SNP\ track pgYoruban3\ wgEncodeCshlLongRnaSeqA549CellLongnonpolyaPlusRawSigRep2 A549 cel pA- + 2 bigWig 1.000000 7604967.000000 A549 whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 167 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel A549 cel pA- + 2\ subGroups view=PlusSignal cellType=t2A549 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqA549CellLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 7604967.000000\ wgEncodeBroadHistoneA549H2azEtoh02Sig A549 EtOH H2A.Z bigWig 0.040000 734.479980 A549 EtOH 0.02% H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 167 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 EtOH 0.02% H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 EtOH H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H2azEtoh02Sig\ type bigWig 0.040000 734.479980\ wgEncodeUwHistoneAg09319InputStdRawRep1 AG19 In Sg 1 bigWig 1.000000 23698.000000 AG09319 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 167 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG09319 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG19 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3AG09319 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg09319InputStdRawRep1\ type bigWig 1.000000 23698.000000\ wgEncodeUwDnaseGm04504PkRep2 GM04504 Pk 2 narrowPeak GM04504 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 167 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM04504 DNaseI HS Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel GM04504 Pk 2\ subGroups view=Peaks cellType=t3GM04504 rep=rep2 treatment=None\ track wgEncodeUwDnaseGm04504PkRep2\ type narrowPeak\ encTfChipPkENCFF120VUT GM12878 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in GM12878 from ENCODE 3 (ENCFF120VUT) 1 167 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in GM12878 from ENCODE 3 (ENCFF120VUT)\ parent encTfChipPk on\ shortLabel GM12878 POLR2A\ subGroups cellType=GM12878 factor=POLR2A\ track encTfChipPkENCFF120VUT\ wgEncodeUwTfbsGm12874CtcfStdHotspotsRep1 GM74 CTCF Ht 1 broadPeak GM12874 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 167 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12874 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM74 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3GM12874 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12874CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsGm12878Tcf12Pcr1xPkRep1 GM78 TCF12 PCR1 1 broadPeak GM12878 TCF12 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 167 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TCF12 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 TCF12 PCR1 1\ subGroups view=Peaks factor=TCF12 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Tcf12Pcr1xPkRep1\ type broadPeak\ wgEncodeOpenChromDnaseH9esSig H9ES DS bigWig 0.000000 1.603000 H9ES DNaseI HS Density Signal from ENCODE/Duke 2 167 0 0 0 127 127 127 1 0 0 regulation 0 longLabel H9ES DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel H9ES DS\ subGroups view=SIG cellType=t3H9ES treatment=zNONE\ track wgEncodeOpenChromDnaseH9esSig\ type bigWig 0.000000 1.603000\ wgEncodeRikenCageHepg2CytosolPapMinusSignalRep2 HepG cyto pA+ - 2 bigWig 0.050000 7257.919922 HepG2 cytosol polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 167 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 cytosol polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HepG cyto pA+ - 2\ subGroups view=MinusRawSignal cellType=t2HEPG2 localization=cytosol rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHepg2CytosolPapMinusSignalRep2\ type bigWig 0.050000 7257.919922\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day11Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_forward 0 167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep1.CNhs13710.13338-143C8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13338-143C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day11Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_forward 1 167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep1.CNhs13710.13338-143C8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13338-143C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CellShorttotalTapPlusRep1 IMR9 cell TAP + 1 bigWig 1.000000 4671571.000000 IMR90 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 167 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 cell TAP + 1\ subGroups view=PlusSignal cellType=t2IMR90 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90CellShorttotalTapPlusRep1\ type bigWig 1.000000 4671571.000000\ wgEncodeSydhTfbsK562Brf1StdPk K562 BRF1 Std narrowPeak K562 BRF1 Standard ChIP-seq Peaks from ENCODE/SYDH 3 167 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 BRF1 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 BRF1 Std\ subGroups view=Peaks factor=BRF1 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Brf1StdPk\ type narrowPeak\ wgEncodeAwgTfbsHaibK562CtcfcPcr1xUniPk K562 CTCF h narrowPeak K562 TFBS Uniform Peaks of CTCF_(SC-5916) from ENCODE/HudsonAlpha/Analysis 1 167 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of CTCF_(SC-5916) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 CTCF h\ subGroups tier=a10 cellType=a10K562 factor=CTCF lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562CtcfcPcr1xUniPk\ wgEncodeOpenChromChipLungocInputSig Lung Input DS bigWig 0.000000 7.026700 Lung OC Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 167 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Lung OC Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Lung Input DS\ subGroups view=SIG factor=zCTRL cellType=t3LUNGOC treatment=AANONE\ track wgEncodeOpenChromChipLungocInputSig\ type bigWig 0.000000 7.026700\ wgEncodeUwDgfNhlfSig NHLF Sig bigWig 1.000000 53849.000000 NHLF DNaseI DGF Per-base Signal from ENCODE/UW 2 167 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHLF DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel NHLF Sig\ subGroups view=Signal cellType=t3NHLF treatment=aNONE rep=rep1\ track wgEncodeUwDgfNhlfSig\ type bigWig 1.000000 53849.000000\ wgEncodeHaibMethylRrbsPrecUwSitesRep2 PrEC 2 bed 9 + PrEC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 167 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PrEC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel PrEC 2\ subGroups cellType=t3PREC obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsPrecUwSitesRep2\ type bed 9 +\ wgEncodeUwAffyExonArrayWi38SimpleSignalRep2 WI-38 2 broadPeak WI-38 Exon array Signal Rep 2 from ENCODE/UW 0 167 0 0 0 127 127 127 0 0 0 expression 1 longLabel WI-38 Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel WI-38 2\ subGroups cellType=t3WI38 rep=rep2 treatment=aNone\ track wgEncodeUwAffyExonArrayWi38SimpleSignalRep2\ type broadPeak\ pgYh1 YanHuang pgSnp Han Chinese Individual (YanHuang Project) 0 167 0 128 128 127 191 191 0 0 0 varRep 1 color 0,128,128\ longLabel Han Chinese Individual (YanHuang Project)\ origAssembly hg18\ parent pgSnp1off\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel YanHuang\ subGroups view=N_1off id=NO_YH type=SNP\ track pgYh1\ wgEncodeCshlLongRnaSeqA549CellPapAlnRep1 A549 cel pA+ A 1 bam A549 whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 168 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel A549 cel pA+ A 1\ subGroups view=Alignments cellType=t2A549 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqA549CellPapAlnRep1\ type bam\ wgEncodeBroadHistoneA549H3k04me1Dex100nmPk A549 DEX H3K4m1 broadPeak A549 DEX 100 nM H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 168 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 DEX 100 nM H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 DEX H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549H3k04me1Dex100nmPk\ type broadPeak\ wgEncodeUwHistoneAg10803H3k4me3StdHotspotsRep1 AG03 H3K4M3 Ht 1 broadPeak AG10803 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 168 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel AG03 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3AG10803 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg10803H3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseGm04504RawRep2 GM04504 Sg 2 bigWig 1.000000 35885.000000 GM04504 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 168 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM04504 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel GM04504 Sg 2\ subGroups view=zRSig cellType=t3GM04504 rep=rep2 treatment=None\ track wgEncodeUwDnaseGm04504RawRep2\ type bigWig 1.000000 35885.000000\ encTfChipPkENCFF753RGL GM12878 RAD21 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in GM12878 from ENCODE 3 (ENCFF753RGL) 1 168 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of RAD21 in GM12878 from ENCODE 3 (ENCFF753RGL)\ parent encTfChipPk off\ shortLabel GM12878 RAD21\ subGroups cellType=GM12878 factor=RAD21\ track encTfChipPkENCFF753RGL\ wgEncodeUwTfbsGm12874CtcfStdPkRep1 GM74 CTCF Pk 1 narrowPeak GM12874 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 168 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12874 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM74 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3GM12874 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12874CtcfStdPkRep1\ type narrowPeak\ wgEncodeHaibTfbsGm12878Tcf12Pcr1xRawRep1 GM78 TCF12 PCR1 1 bigWig 0.180535 142.848007 GM12878 TCF12 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 168 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 TCF12 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 TCF12 PCR1 1\ subGroups view=RawSignal factor=TCF12 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Tcf12Pcr1xRawRep1\ type bigWig 0.180535 142.848007\ wgEncodeOpenChromDnaseH9esBaseOverlapSignal H9ES OS bigWig 0.000000 269.000000 H9ES DNaseI HS Overlap Signal from ENCODE/Duke 2 168 0 0 0 127 127 127 1 0 0 regulation 0 longLabel H9ES DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel H9ES OS\ subGroups view=SIGBO cellType=t3H9ES treatment=zNONE\ track wgEncodeOpenChromDnaseH9esBaseOverlapSignal\ type bigWig 0.000000 269.000000\ wgEncodeRikenCageHepg2CytosolPapAlnRep1 HepG cyto pA+ A 1 bam HepG2 cytosol polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 168 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 cytosol polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HepG cyto pA+ A 1\ subGroups view=Alignments cellType=t2HEPG2 localization=cytosol rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHepg2CytosolPapAlnRep1\ type bam\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_ctss_rev Hes3-gfpCardiomyocyticInduction_Day11Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_reverse 0 168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep1.CNhs13710.13338-143C8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13338-143C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_tpm_rev Hes3-gfpCardiomyocyticInduction_Day11Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_reverse 1 168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep1.CNhs13710.13338-143C8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13338-143C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CellShorttotalTapPlusRep2 IMR9 cell TAP + 2 bigWig 1.000000 2238216.000000 IMR90 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 168 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 cell TAP + 2\ subGroups view=PlusSignal cellType=t2IMR90 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90CellShorttotalTapPlusRep2\ type bigWig 1.000000 2238216.000000\ wgEncodeSydhTfbsK562Brf1StdSig K562 BRF1 Std bigWig 0.000000 11787.900391 K562 BRF1 Standard ChIP-seq Signal from ENCODE/SYDH 2 168 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 BRF1 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 BRF1 Std\ subGroups view=Signal factor=BRF1 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Brf1StdSig\ type bigWig 0.000000 11787.900391\ wgEncodeAwgTfbsSydhK562CtcfbIggrabUniPk K562 CTCF s narrowPeak K562 TFBS Uniform Peaks of CTCF_(SC-15914) from ENCODE/Stanford/Analysis 1 168 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of CTCF_(SC-15914) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 CTCF s\ subGroups tier=a10 cellType=a10K562 factor=CTCF lab=Stanford\ track wgEncodeAwgTfbsSydhK562CtcfbIggrabUniPk\ wgEncodeOpenChromChipMedulloCtcfPkRep1 Medullo CTCF Pk narrowPeak Medullo CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 168 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Medullo CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel Medullo CTCF Pk\ subGroups view=Peaks factor=CTCF cellType=t3MEDULLO treatment=AANONE\ track wgEncodeOpenChromChipMedulloCtcfPkRep1\ type narrowPeak\ wgEncodeUwDgfNhlfRaw NHLF Raw bigWig 1.000000 337474.000000 NHLF DNaseI DGF Raw Signal from ENCODE/UW 0 168 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHLF DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel NHLF Raw\ subGroups view=zRaw cellType=t3NHLF treatment=aNONE rep=rep1\ track wgEncodeUwDgfNhlfRaw\ type bigWig 1.000000 337474.000000\ wgEncodeHaibMethylRrbsProgfibSitesRep1 ProgFib 1 bed 9 + ProgFib Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 168 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ProgFib Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel ProgFib 1\ subGroups obtainedBy=DUKE cellType=t3PROGFIB treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsProgfibSitesRep1\ type bed 9 +\ pgSjk SJK pgSnp Seong-Jin Kim (SJK, GUMS/KOBIC) 0 168 0 128 128 127 191 191 0 0 0 varRep 1 color 0,128,128\ longLabel Seong-Jin Kim (SJK, GUMS/KOBIC)\ origAssembly hg18\ parent pgSnp1off\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel SJK\ subGroups view=N_1off id=NP_SJK type=SNP\ track pgSjk\ wgEncodeUwAffyExonArrayWi38OhtamSimpleSignalRep2 WI-38 tam 2 broadPeak WI-38 (tamoxifen) Exon array Signal Rep 2 from ENCODE/UW 0 168 0 0 0 127 127 127 0 0 0 expression 1 longLabel WI-38 (tamoxifen) Exon array Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwAffyExonArray off\ shortLabel WI-38 tam 2\ subGroups cellType=t3WI38 rep=rep2 treatment=OHTAM\ track wgEncodeUwAffyExonArrayWi38OhtamSimpleSignalRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqA549CellPapAlnRep2 A549 cel pA+ A 2 bam A549 whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 169 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel A549 cel pA+ A 2\ subGroups view=Alignments cellType=t2A549 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqA549CellPapAlnRep2\ type bam\ wgEncodeBroadHistoneA549H3k04me1Dex100nmSig A549 DEX H3K4m1 bigWig 0.040000 693.880005 A549 DEX 100 nM H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 169 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 DEX 100 nM H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 DEX H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549H3k04me1Dex100nmSig\ type bigWig 0.040000 693.880005\ wgEncodeUwHistoneAg10803H3k4me3StdPkRep1 AG03 H3K4M3 Pk 1 narrowPeak AG10803 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 169 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel AG03 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3AG10803 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg10803H3k4me3StdPkRep1\ type narrowPeak\ pgAk1 AK1 pgSnp Anonymous Korean individual, AK1 (Genomic Medicine Institute) 3 169 0 128 64 127 191 159 0 0 0 varRep 1 color 0,128,64\ longLabel Anonymous Korean individual, AK1 (Genomic Medicine Institute)\ origAssembly hg18\ parent pgSnp1off\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel AK1\ subGroups view=N_1off id=NQ_AK1 type=SNP\ track pgAk1\ visibility pack\ wgEncodeUwDnaseGm06990HotspotsRep1 GM06990 Ht 1 broadPeak GM06990 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 169 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel GM06990 Ht 1\ subGroups view=Hot cellType=t3GM06990 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm06990HotspotsRep1\ type broadPeak\ encTfChipPkENCFF445UJF GM12878 RAD51 narrowPeak Transcription Factor ChIP-seq Peaks of RAD51 in GM12878 from ENCODE 3 (ENCFF445UJF) 1 169 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of RAD51 in GM12878 from ENCODE 3 (ENCFF445UJF)\ parent encTfChipPk off\ shortLabel GM12878 RAD51\ subGroups cellType=GM12878 factor=RAD51\ track encTfChipPkENCFF445UJF\ wgEncodeUwTfbsGm12874CtcfStdRawRep1 GM74 CTCF Sg 1 bigWig 1.000000 3615.000000 GM12874 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 169 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12874 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM74 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3GM12874 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12874CtcfStdRawRep1\ type bigWig 1.000000 3615.000000\ wgEncodeHaibTfbsGm12878Tcf12Pcr1xPkRep2 GM78 TCF12 PCR1 2 broadPeak GM12878 TCF12 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 169 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TCF12 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 TCF12 PCR1 2\ subGroups view=Peaks factor=TCF12 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Tcf12Pcr1xPkRep2\ type broadPeak\ wgEncodeOpenChromDnaseHeartocPk Heart Pk narrowPeak Heart OC DNaseI HS Peaks from ENCODE/Duke 3 169 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Heart OC DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Heart Pk\ subGroups view=Peaks cellType=t3HEARTOC treatment=zNONE\ track wgEncodeOpenChromDnaseHeartocPk\ type narrowPeak\ wgEncodeRikenCageHepg2CytosolPapAlnRep2 HepG cyto pA+ A 2 bam HepG2 cytosol polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 169 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 cytosol polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HepG cyto pA+ A 2\ subGroups view=Alignments cellType=t2HEPG2 localization=cytosol rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHepg2CytosolPapAlnRep2\ type bam\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day11Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_forward 0 169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep2.CNhs13723.13350-143E2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13350-143E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day11Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_forward 1 169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep2.CNhs13723.13350-143E2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13350-143E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CytosolCiptapContigs IMR9 cyto CIP C bed 6 IMR90 CIP-TAP cytosol small RNA-seq Contigs from ENCODE/CSHL 2 169 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 CIP-TAP cytosol small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel IMR9 cyto CIP C\ subGroups view=Contigs cellType=t2IMR90 localization=CYTOSOL protocol=CIPTAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqImr90CytosolCiptapContigs\ type bed 6\ wgEncodeSydhTfbsK562Brf2StdPk K562 BRF2 Std narrowPeak K562 BRF2 Standard ChIP-seq Peaks from ENCODE/SYDH 3 169 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 BRF2 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 BRF2 Std\ subGroups view=Peaks factor=BRF2 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Brf2StdPk\ type narrowPeak\ wgEncodeAwgTfbsUtaK562CtcfUniPk K562 CTCF t narrowPeak K562 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 169 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel K562 CTCF t\ subGroups tier=a10 cellType=a10K562 factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaK562CtcfUniPk\ wgEncodeOpenChromChipMedulloCtcfSig Medullo CTCF DS bigWig 0.000000 5.218800 Medullo CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 169 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Medullo CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Medullo CTCF DS\ subGroups view=SIG factor=CTCF cellType=t3MEDULLO treatment=AANONE\ track wgEncodeOpenChromChipMedulloCtcfSig\ type bigWig 0.000000 5.218800\ wgEncodeHaibMethylRrbsProgfibSitesRep2 ProgFib 2 bed 9 + ProgFib Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 169 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ProgFib Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel ProgFib 2\ subGroups obtainedBy=DUKE cellType=t3PROGFIB treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsProgfibSitesRep2\ type bed 9 +\ wgEncodeUwDgfRpmi7951Hotspots RPMI-7951 Hot broadPeak RPMI-7951 DNaseI DGF Hotspots from ENCODE/UW 0 169 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPMI-7951 DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel RPMI-7951 Hot\ subGroups view=Hotspots cellType=t3RPMI7951 treatment=aNONE rep=rep1\ track wgEncodeUwDgfRpmi7951Hotspots\ type broadPeak\ wgEncodeCshlLongRnaSeqA549CellPapContigs A549 cel pA+ C bed 6 + A549 whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 170 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel A549 cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2A549 localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqA549CellPapContigs\ type bed 6 +\ wgEncodeBroadHistoneA549H3k04me1Etoh02Pk A549 EtOH H3K4m1 broadPeak A549 EtOH 0.02% H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 170 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 EtOH 0.02% H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 EtOH H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k04me1Etoh02Pk\ type broadPeak\ wgEncodeUwHistoneAg10803H3k4me3StdRawRep1 AG03 H3K4M3 Sg 1 bigWig 1.000000 6328.000000 AG10803 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 170 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG10803 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG03 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3AG10803 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg10803H3k4me3StdRawRep1\ type bigWig 1.000000 6328.000000\ wgEncodeUwDnaseGm06990PkRep1 GM06990 Pk 1 narrowPeak GM06990 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 170 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel GM06990 Pk 1\ subGroups view=Peaks cellType=t3GM06990 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm06990PkRep1\ type narrowPeak\ encTfChipPkENCFF601XVA GM12878 RB1 narrowPeak Transcription Factor ChIP-seq Peaks of RB1 in GM12878 from ENCODE 3 (ENCFF601XVA) 1 170 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of RB1 in GM12878 from ENCODE 3 (ENCFF601XVA)\ parent encTfChipPk off\ shortLabel GM12878 RB1\ subGroups cellType=GM12878 factor=RB1\ track encTfChipPkENCFF601XVA\ wgEncodeUwTfbsGm12874CtcfStdHotspotsRep2 GM74 CTCF Ht 2 broadPeak GM12874 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 170 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12874 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM74 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3GM12874 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12874CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsGm12878Tcf12Pcr1xRawRep2 GM78 TCF12 PCR1 2 bigWig 0.186031 172.636993 GM12878 TCF12 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 170 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 TCF12 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 TCF12 PCR1 2\ subGroups view=RawSignal factor=TCF12 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Tcf12Pcr1xRawRep2\ type bigWig 0.186031 172.636993\ wgEncodeOpenChromDnaseHeartocSig Heart DS bigWig 0.000000 2.241000 Heart OC DNaseI HS Density Signal from ENCODE/Duke 2 170 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Heart OC DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Heart DS\ subGroups view=SIG cellType=t3HEARTOC treatment=zNONE\ track wgEncodeOpenChromDnaseHeartocSig\ type bigWig 0.000000 2.241000\ wgEncodeRikenCageHepg2NucleolusTotalTssHmmV3 HepG nlos tot bed 6 HepG2 nucleolus total CAGE TSS HMM from ENCODE/RIKEN 3 170 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleolus total CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HepG nlos tot\ subGroups view=TssHmm cellType=t2HEPG2 localization=nucleolus rnaExtract=total rep=rep0 rank=rankP\ track wgEncodeRikenCageHepg2NucleolusTotalTssHmmV3\ type bed 6\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_ctss_rev Hes3-gfpCardiomyocyticInduction_Day11Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_reverse 0 170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep2.CNhs13723.13350-143E2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13350-143E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_tpm_rev Hes3-gfpCardiomyocyticInduction_Day11Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_reverse 1 170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep2.CNhs13723.13350-143E2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13350-143E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CytosolShorttotalCiptapMinusRep1 IMR9 cyto CIP - 1 bigWig 1.000000 8303185.000000 IMR90 CIP-TAP cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 170 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 CIP-TAP cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 cyto CIP - 1\ subGroups view=MinusSignal cellType=t2IMR90 localization=CYTOSOL protocol=CIPTAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90CytosolShorttotalCiptapMinusRep1\ type bigWig 1.000000 8303185.000000\ pgIrish Irish Male pgSnp Anonymous Irish Male 0 170 0 100 100 127 177 177 0 0 0 varRep 1 color 0,100,100\ longLabel Anonymous Irish Male\ origAssembly hg18\ parent pgSnp1off\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel Irish Male\ subGroups view=N_1off id=NRS_Irish type=SNP\ track pgIrish\ wgEncodeSydhTfbsK562Brf2StdSig K562 BRF2 Std bigWig 0.000000 13498.599609 K562 BRF2 Standard ChIP-seq Signal from ENCODE/SYDH 2 170 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 BRF2 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 BRF2 Std\ subGroups view=Signal factor=BRF2 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Brf2StdSig\ type bigWig 0.000000 13498.599609\ wgEncodeAwgTfbsUwK562CtcfUniPk K562 CTCF w narrowPeak K562 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 170 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 CTCF w\ subGroups tier=a10 cellType=a10K562 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwK562CtcfUniPk\ wgEncodeOpenChromChipMedulloCtcfBaseOverlapSignal Medullo CTCF OS bigWig 0.000000 4425.000000 Medullo CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 170 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Medullo CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel Medullo CTCF OS\ subGroups view=SIGBO factor=CTCF cellType=t3MEDULLO treatment=AANONE\ track wgEncodeOpenChromChipMedulloCtcfBaseOverlapSignal\ type bigWig 0.000000 4425.000000\ wgEncodeUwDgfRpmi7951Pk RPMI-7951 Pk narrowPeak RPMI-7951 DNaseI DGF Peaks from ENCODE/UW 0 170 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPMI-7951 DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel RPMI-7951 Pk\ subGroups view=Peaks cellType=t3RPMI7951 treatment=aNONE rep=rep1\ track wgEncodeUwDgfRpmi7951Pk\ type narrowPeak\ wgEncodeHaibMethylRrbsRptecSitesRep1 RPTEC 1 bed 9 + RPTEC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 170 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPTEC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel RPTEC 1\ subGroups obtainedBy=UW cellType=t3RPTEC treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsRptecSitesRep1\ type bed 9 +\ wgEncodeCshlLongRnaSeqA549CellPapJunctions A549 cel pA+ J bed 6 + A549 whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 171 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel A549 cel pA+ J\ subGroups view=Junctions cellType=t2A549 localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqA549CellPapJunctions\ type bed 6 +\ wgEncodeBroadHistoneA549H3k04me1Etoh02Sig A549 EtOH H3K4m1 bigWig 0.040000 704.159973 A549 EtOH 0.02% H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 171 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 EtOH 0.02% H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 EtOH H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k04me1Etoh02Sig\ type bigWig 0.040000 704.159973\ wgEncodeUwHistoneAg10803H3k4me3StdHotspotsRep2 AG03 H3K4M3 Ht 2 broadPeak AG10803 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 171 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel AG03 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3AG10803 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAg10803H3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseGm06990RawRep1 GM06990 Sg 1 bigWig 1.000000 12670.000000 GM06990 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 171 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel GM06990 Sg 1\ subGroups view=zRSig cellType=t3GM06990 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm06990RawRep1\ type bigWig 1.000000 12670.000000\ encTfChipPkENCFF814CZI GM12878 RBBP5 narrowPeak Transcription Factor ChIP-seq Peaks of RBBP5 in GM12878 from ENCODE 3 (ENCFF814CZI) 1 171 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of RBBP5 in GM12878 from ENCODE 3 (ENCFF814CZI)\ parent encTfChipPk off\ shortLabel GM12878 RBBP5\ subGroups cellType=GM12878 factor=RBBP5\ track encTfChipPkENCFF814CZI\ wgEncodeUwTfbsGm12874CtcfStdPkRep2 GM74 CTCF Pk 2 narrowPeak GM12874 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 171 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12874 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM74 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3GM12874 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12874CtcfStdPkRep2\ type narrowPeak\ wgEncodeHaibTfbsGm12878Tcf3Pcr1xPkRep1 GM78 TCF3 PCR1 1 broadPeak GM12878 TCF3 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 171 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TCF3 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 TCF3 PCR1 1\ subGroups view=Peaks factor=TCF3 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Tcf3Pcr1xPkRep1\ type broadPeak\ wgEncodeOpenChromDnaseHeartocBaseOverlapSignal Heart OS bigWig 0.000000 275.000000 Heart OC DNaseI HS Overlap Signal from ENCODE/Duke 2 171 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Heart OC DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Heart OS\ subGroups view=SIGBO cellType=t3HEARTOC treatment=zNONE\ track wgEncodeOpenChromDnaseHeartocBaseOverlapSignal\ type bigWig 0.000000 275.000000\ wgEncodeRikenCageHepg2NucleolusTotalPlusSignal HepG nlus tot + 1 bigWig 0.040000 4464.319824 HepG2 nucleolus total CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 171 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleolus total CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HepG nlus tot + 1\ subGroups view=PlusRawSignal cellType=t2HEPG2 localization=nucleolus rnaExtract=total rep=rep0 rank=rank1\ track wgEncodeRikenCageHepg2NucleolusTotalPlusSignal\ type bigWig 0.040000 4464.319824\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day11Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_forward 0 171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep3.CNhs13735.13362-143F5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13362-143F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day11Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_forward 1 171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep3.CNhs13735.13362-143F5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13362-143F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CytosolShorttotalCiptapMinusRep2 IMR9 cyto CIP - 2 bigWig 1.000000 13297189.000000 IMR90 CIP-TAP cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 171 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 CIP-TAP cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 cyto CIP - 2\ subGroups view=MinusSignal cellType=t2IMR90 localization=CYTOSOL protocol=CIPTAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90CytosolShorttotalCiptapMinusRep2\ type bigWig 1.000000 13297189.000000\ wgEncodeSydhTfbsK562Brg1IggmusPk K562 BRG1 IgM narrowPeak K562 BRG1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 171 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 BRG1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 BRG1 IgM\ subGroups view=Peaks factor=BRG1 cellType=t1K562 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsK562Brg1IggmusPk\ type narrowPeak\ wgEncodeAwgTfbsHaibK562Ctcflsc98982V0416101UniPk K562 CTCFL narrowPeak K562 TFBS Uniform Peaks of CTCFL_(SC-98982) from ENCODE/HudsonAlpha/Analysis 1 171 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of CTCFL_(SC-98982) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 CTCFL\ subGroups tier=a10 cellType=a10K562 factor=CTCFL lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Ctcflsc98982V0416101UniPk\ pgKriek M. Kriek pgSnp Marjolein Kriek (Leiden University Medical Centre) 0 171 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Marjolein Kriek (Leiden University Medical Centre)\ parent pgSnp1off\ shortLabel M. Kriek\ subGroups view=N_1off id=NR_Kriek type=SNP\ track pgKriek\ wgEncodeOpenChromChipMedulloInputSig Medullo Input DS bigWig 0.000000 6.733300 Medullo Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 171 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Medullo Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Medullo Input DS\ subGroups view=SIG factor=zCTRL cellType=t3MEDULLO treatment=AANONE\ track wgEncodeOpenChromChipMedulloInputSig\ type bigWig 0.000000 6.733300\ wgEncodeUwDgfRpmi7951Sig RPMI-7951 Sig bigWig 1.000000 50651.000000 RPMI-7951 DNaseI DGF Per-base Signal from ENCODE/UW 2 171 0 0 0 127 127 127 0 0 0 regulation 0 longLabel RPMI-7951 DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel RPMI-7951 Sig\ subGroups view=Signal cellType=t3RPMI7951 treatment=aNONE rep=rep1\ track wgEncodeUwDgfRpmi7951Sig\ type bigWig 1.000000 50651.000000\ wgEncodeHaibMethylRrbsRptecSitesRep2 RPTEC 2 bed 9 + RPTEC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 171 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPTEC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel RPTEC 2\ subGroups obtainedBy=UW cellType=t3RPTEC treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsRptecSitesRep2\ type bed 9 +\ wgEncodeCshlLongRnaSeqA549CellPapMinusRawSigRep1 A549 cel pA+ - 1 bigWig 1.000000 1112985.000000 A549 whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 172 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel A549 cel pA+ - 1\ subGroups view=MinusSignal cellType=t2A549 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqA549CellPapMinusRawSigRep1\ type bigWig 1.000000 1112985.000000\ wgEncodeBroadHistoneA549H3k04me2Dex100nmPk A549 DEX H3K4m2 broadPeak A549 DEX 100 nM H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 172 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 DEX 100 nM H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 DEX H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549H3k04me2Dex100nmPk\ type broadPeak\ wgEncodeUwHistoneAg10803H3k4me3StdPkRep2 AG03 H3K4M3 Pk 2 narrowPeak AG10803 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 172 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel AG03 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3AG10803 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAg10803H3k4me3StdPkRep2\ type narrowPeak\ wgEncodeUwDnaseGm06990HotspotsRep2 GM06990 Ht 2 broadPeak GM06990 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 172 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel GM06990 Ht 2\ subGroups view=Hot cellType=t3GM06990 rep=rep2 treatment=None\ track wgEncodeUwDnaseGm06990HotspotsRep2\ type broadPeak\ encTfChipPkENCFF898MUV GM12878 RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in GM12878 from ENCODE 3 (ENCFF898MUV) 1 172 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in GM12878 from ENCODE 3 (ENCFF898MUV)\ parent encTfChipPk off\ shortLabel GM12878 RCOR1\ subGroups cellType=GM12878 factor=RCOR1\ track encTfChipPkENCFF898MUV\ wgEncodeUwTfbsGm12874CtcfStdRawRep2 GM74 CTCF Sg 2 bigWig 1.000000 4160.000000 GM12874 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 172 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12874 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM74 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3GM12874 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12874CtcfStdRawRep2\ type bigWig 1.000000 4160.000000\ wgEncodeHaibTfbsGm12878Tcf3Pcr1xRawRep1 GM78 TCF3 PCR1 1 bigWig 0.143866 157.281006 GM12878 TCF3 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 172 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 TCF3 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 TCF3 PCR1 1\ subGroups view=RawSignal factor=TCF3 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Tcf3Pcr1xRawRep1\ type bigWig 0.143866 157.281006\ pgLucier Greg Lucier pgSnp Gregory Lucier (Life Technologies) 0 172 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Gregory Lucier (Life Technologies)\ origAssembly hg18\ parent pgSnp1off\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel Greg Lucier\ subGroups view=N_1off id=NR_Lucier type=SNP\ track pgLucier\ wgEncodeOpenChromDnaseHek293tPk HEK293T Pk narrowPeak HEK293T DNaseI HS Peaks from ENCODE/Duke 3 172 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HEK293T DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel HEK293T Pk\ subGroups view=Peaks cellType=t3HEK293T treatment=zNONE\ track wgEncodeOpenChromDnaseHek293tPk\ type narrowPeak\ wgEncodeRikenCageHepg2NucleolusTotalMinusSignal HepG nlus tot - 1 bigWig 0.040000 4464.319824 HepG2 nucleolus total CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 172 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleolus total CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HepG nlus tot - 1\ subGroups view=MinusRawSignal cellType=t2HEPG2 localization=nucleolus rnaExtract=total rep=rep0 rank=rank1\ track wgEncodeRikenCageHepg2NucleolusTotalMinusSignal\ type bigWig 0.040000 4464.319824\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_ctss_rev Hes3-gfpCardiomyocyticInduction_Day11Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_reverse 0 172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep3.CNhs13735.13362-143F5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13362-143F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_tpm_rev Hes3-gfpCardiomyocyticInduction_Day11Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_reverse 1 172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep3.CNhs13735.13362-143F5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13362-143F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CytosolShorttotalCiptapPlusRep1 IMR9 cyto CIP + 1 bigWig 1.000000 8302856.000000 IMR90 CIP-TAP cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 172 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 CIP-TAP cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 cyto CIP + 1\ subGroups view=PlusSignal cellType=t2IMR90 localization=CYTOSOL protocol=CIPTAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90CytosolShorttotalCiptapPlusRep1\ type bigWig 1.000000 8302856.000000\ wgEncodeSydhTfbsK562Brg1IggmusSig K562 BRG1 IgM bigWig 0.000000 10317.900391 K562 BRG1 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 172 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 BRG1 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 BRG1 IgM\ subGroups view=Signal factor=BRG1 cellType=t1K562 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsK562Brg1IggmusSig\ type bigWig 0.000000 10317.900391\ wgEncodeAwgTfbsSydhK562E2f4UcdUniPk K562 E2F4 narrowPeak K562 TFBS Uniform Peaks of E2F4 from ENCODE/USC/Analysis 1 172 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of E2F4 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 E2F4\ subGroups tier=a10 cellType=a10K562 factor=E2F4 lab=USC\ track wgEncodeAwgTfbsSydhK562E2f4UcdUniPk\ wgEncodeOpenChromChipNhekCtcfPk NHEK CTCF Pk narrowPeak NHEK CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 172 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel NHEK CTCF Pk\ subGroups treatment=AANONE view=Peaks factor=CTCF cellType=t3NHEK\ track wgEncodeOpenChromChipNhekCtcfPk\ type narrowPeak\ wgEncodeUwDgfRpmi7951Raw RPMI-7951 Raw bigWig 1.000000 217968.000000 RPMI-7951 DNaseI DGF Raw Signal from ENCODE/UW 0 172 0 0 0 127 127 127 0 0 0 regulation 0 longLabel RPMI-7951 DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel RPMI-7951 Raw\ subGroups view=zRaw cellType=t3RPMI7951 treatment=aNONE rep=rep1\ track wgEncodeUwDgfRpmi7951Raw\ type bigWig 1.000000 217968.000000\ wgEncodeHaibMethylRrbsSaecUwSitesRep1 SAEC 1 bed 9 + SAEC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 172 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel SAEC 1\ subGroups cellType=t3SAEC obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsSaecUwSitesRep1\ type bed 9 +\ wgEncodeCshlLongRnaSeqA549CellPapMinusRawSigRep2 A549 cel pA+ - 2 bigWig 1.000000 311436.000000 A549 whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 173 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel A549 cel pA+ - 2\ subGroups view=MinusSignal cellType=t2A549 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqA549CellPapMinusRawSigRep2\ type bigWig 1.000000 311436.000000\ wgEncodeBroadHistoneA549H3k04me2Dex100nmSig A549 DEX H3K4m2 bigWig 0.040000 624.520020 A549 DEX 100 nM H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 173 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 DEX 100 nM H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 DEX H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549H3k04me2Dex100nmSig\ type bigWig 0.040000 624.520020\ wgEncodeUwHistoneAg10803H3k4me3StdRawRep2 AG03 H3K4M3 Sg 2 bigWig 1.000000 6842.000000 AG10803 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 173 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG10803 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG03 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3AG10803 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAg10803H3k4me3StdRawRep2\ type bigWig 1.000000 6842.000000\ wgEncodeUwDnaseGm06990PkRep2 GM06990 Pk 2 narrowPeak GM06990 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 173 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel GM06990 Pk 2\ subGroups view=Peaks cellType=t3GM06990 rep=rep2 treatment=None\ track wgEncodeUwDnaseGm06990PkRep2\ type narrowPeak\ encTfChipPkENCFF456FQB GM12878 RELB narrowPeak Transcription Factor ChIP-seq Peaks of RELB in GM12878 from ENCODE 3 (ENCFF456FQB) 1 173 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of RELB in GM12878 from ENCODE 3 (ENCFF456FQB)\ parent encTfChipPk off\ shortLabel GM12878 RELB\ subGroups cellType=GM12878 factor=RELB\ track encTfChipPkENCFF456FQB\ wgEncodeUwTfbsGm12874InputStdRawRep1 GM74 In Sg 1 bigWig 1.000000 8370.000000 GM12874 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 173 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12874 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM74 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3GM12874 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12874InputStdRawRep1\ type bigWig 1.000000 8370.000000\ wgEncodeHaibTfbsGm12878Tcf3Pcr1xPkRep2 GM78 TCF3 PCR1 2 broadPeak GM12878 TCF3 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 173 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 TCF3 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 TCF3 PCR1 2\ subGroups view=Peaks factor=TCF3 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Tcf3Pcr1xPkRep2\ type broadPeak\ wgEncodeOpenChromDnaseHek293tSig HEK293T DS bigWig 0.000000 0.702200 HEK293T DNaseI HS Density Signal from ENCODE/Duke 2 173 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HEK293T DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel HEK293T DS\ subGroups view=SIG cellType=t3HEK293T treatment=zNONE\ track wgEncodeOpenChromDnaseHek293tSig\ type bigWig 0.000000 0.702200\ wgEncodeRikenCageHepg2NucleolusTotalAln HepG nlus tot A 1 bam HepG2 nucleolus total CAGE Alignments Rep 1 from ENCODE/RIKEN 0 173 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleolus total CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HepG nlus tot A 1\ subGroups view=Alignments cellType=t2HEPG2 localization=nucleolus rnaExtract=total rep=rep0 rank=rank1\ track wgEncodeRikenCageHepg2NucleolusTotalAln\ type bam\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day12Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_forward 0 173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep1.CNhs13711.13339-143C9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13339-143C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day12Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_forward 1 173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep1.CNhs13711.13339-143C9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13339-143C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CytosolShorttotalCiptapPlusRep2 IMR9 cyto CIP + 2 bigWig 1.000000 13294850.000000 IMR90 CIP-TAP cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 173 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 CIP-TAP cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 cyto CIP + 2\ subGroups view=PlusSignal cellType=t2IMR90 localization=CYTOSOL protocol=CIPTAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90CytosolShorttotalCiptapPlusRep2\ type bigWig 1.000000 13294850.000000\ wgEncodeSydhTfbsK562Ccnt2StdPk K562 CNT2 Std narrowPeak K562 CCNT2 Standard ChIP-seq Peaks from ENCODE/SYDH 3 173 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CCNT2 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 CNT2 Std\ subGroups view=Peaks factor=CCNT2 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Ccnt2StdPk\ type narrowPeak\ wgEncodeAwgTfbsHaibK562E2f6V0416102UniPk K562 E2F6 h narrowPeak K562 TFBS Uniform Peaks of E2F6 from ENCODE/HudsonAlpha/Analysis 1 173 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of E2F6 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 E2F6 h\ subGroups tier=a10 cellType=a10K562 factor=E2F6 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562E2f6V0416102UniPk\ wgEncodeOpenChromChipNhekCtcfSig NHEK CTCF DS bigWig 0.000000 16.593500 NHEK CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 173 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel NHEK CTCF DS\ subGroups treatment=AANONE view=SIG factor=CTCF cellType=t3NHEK\ track wgEncodeOpenChromChipNhekCtcfSig\ type bigWig 0.000000 16.593500\ pgQuake S. Quake pgSnp Stephen Quake (Stanford) 0 173 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Stephen Quake (Stanford)\ origAssembly hg18\ parent pgSnp1off\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel S. Quake\ subGroups view=N_1off id=NR_Quake type=SNP\ track pgQuake\ wgEncodeHaibMethylRrbsSaecUwSitesRep2 SAEC 2 bed 9 + SAEC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 173 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel SAEC 2\ subGroups cellType=t3SAEC obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsSaecUwSitesRep2\ type bed 9 +\ wgEncodeUwDgfSaecHotspots SAEC Hot broadPeak SAEC DNaseI DGF Hotspots from ENCODE/UW 0 173 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC DNaseI DGF Hotspots from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewHotspots off\ shortLabel SAEC Hot\ subGroups view=Hotspots cellType=t3SAEC treatment=aNONE rep=rep1\ track wgEncodeUwDgfSaecHotspots\ type broadPeak\ wgEncodeCshlLongRnaSeqA549CellPapPlusRawSigRep1 A549 cel pA+ + 1 bigWig 1.000000 838938.000000 A549 whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 174 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel A549 cel pA+ + 1\ subGroups view=PlusSignal cellType=t2A549 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqA549CellPapPlusRawSigRep1\ type bigWig 1.000000 838938.000000\ wgEncodeBroadHistoneA549H3k04me2Etoh02Pk A549 EtOH H3K4m2 broadPeak A549 EtOH 0.02% H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 174 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 EtOH 0.02% H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 EtOH H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k04me2Etoh02Pk\ type broadPeak\ wgEncodeUwHistoneAg10803InputStdRawRep1 AG03 In Sg 1 bigWig 1.000000 21401.000000 AG10803 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 174 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AG10803 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AG03 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3AG10803 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAg10803InputStdRawRep1\ type bigWig 1.000000 21401.000000\ wgEncodeUwDnaseGm06990RawRep2 GM06990 Sg 2 bigWig 1.000000 13706.000000 GM06990 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 174 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel GM06990 Sg 2\ subGroups view=zRSig cellType=t3GM06990 rep=rep2 treatment=None\ track wgEncodeUwDnaseGm06990RawRep2\ type bigWig 1.000000 13706.000000\ encTfChipPkENCFF677KJB GM12878 REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in GM12878 from ENCODE 3 (ENCFF677KJB) 1 174 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of REST in GM12878 from ENCODE 3 (ENCFF677KJB)\ parent encTfChipPk off\ shortLabel GM12878 REST 1\ subGroups cellType=GM12878 factor=REST\ track encTfChipPkENCFF677KJB\ wgEncodeUwTfbsGm12875CtcfStdHotspotsRep1 GM75 CTCF Ht 1 broadPeak GM12875 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 174 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12875 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM75 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3GM12875 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12875CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsGm12878Tcf3Pcr1xRawRep2 GM78 TCF3 PCR1 2 bigWig 0.187935 486.845001 GM12878 TCF3 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 174 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 TCF3 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 TCF3 PCR1 2\ subGroups view=RawSignal factor=TCF3 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Tcf3Pcr1xRawRep2\ type bigWig 0.187935 486.845001\ wgEncodeOpenChromDnaseHek293tBaseOverlapSignal HEK293T OS bigWig 0.000000 198.000000 HEK293T DNaseI HS Overlap Signal from ENCODE/Duke 2 174 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HEK293T DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel HEK293T OS\ subGroups view=SIGBO cellType=t3HEK293T treatment=zNONE\ track wgEncodeOpenChromDnaseHek293tBaseOverlapSignal\ type bigWig 0.000000 198.000000\ wgEncodeRikenCageHepg2NucleusPamTssHmmV2 HepG nucl pA- bed 6 HepG2 nucleus polyA- CAGE TSS HMM from ENCODE/RIKEN 3 174 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleus polyA- CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HepG nucl pA-\ subGroups view=TssHmm cellType=t2HEPG2 localization=nucleus rnaExtract=pAM rep=rep0 rank=rankP\ track wgEncodeRikenCageHepg2NucleusPamTssHmmV2\ type bed 6\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_ctss_rev Hes3-gfpCardiomyocyticInduction_Day12Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_reverse 0 174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep1.CNhs13711.13339-143C9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13339-143C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_tpm_rev Hes3-gfpCardiomyocyticInduction_Day12Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_reverse 1 174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep1.CNhs13711.13339-143C9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13339-143C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CytosolContigs IMR9 cyto C bed 6 IMR90 cytosol small RNA-seq Contigs from ENCODE/CSHL 2 174 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 cytosol small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel IMR9 cyto C\ subGroups view=Contigs rep=Pooled cellType=t2IMR90 localization=CYTOSOL protocol=NONE rank=none\ track wgEncodeCshlShortRnaSeqImr90CytosolContigs\ type bed 6\ wgEncodeSydhTfbsK562Ccnt2StdSig K562 CNT2 Std bigWig 0.000000 4295.200195 K562 CCNT2 Standard ChIP-seq Signal from ENCODE/SYDH 2 174 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CCNT2 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 CNT2 Std\ subGroups view=Signal factor=CCNT2 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Ccnt2StdSig\ type bigWig 0.000000 4295.200195\ wgEncodeAwgTfbsSydhK562E2f6UcdUniPk K562 E2F6 c narrowPeak K562 TFBS Uniform Peaks of E2F6 from ENCODE/USC/Analysis 1 174 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of E2F6 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 E2F6 c\ subGroups tier=a10 cellType=a10K562 factor=E2F6 lab=USC\ track wgEncodeAwgTfbsSydhK562E2f6UcdUniPk\ wgEncodeOpenChromChipNhekCtcfBaseOverlapSignal NHEK CTCF OS bigWig 0.000000 3899.000000 NHEK CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 174 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel NHEK CTCF OS\ subGroups treatment=AANONE view=SIGBO factor=CTCF cellType=t3NHEK\ track wgEncodeOpenChromChipNhekCtcfBaseOverlapSignal\ type bigWig 0.000000 3899.000000\ wgEncodeUwDgfSaecPk SAEC Pk narrowPeak SAEC DNaseI DGF Peaks from ENCODE/UW 0 174 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC DNaseI DGF Peaks from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewPeaks off\ shortLabel SAEC Pk\ subGroups view=Peaks cellType=t3SAEC treatment=aNONE rep=rep1\ track wgEncodeUwDgfSaecPk\ type narrowPeak\ pgSaqqaq Saqqaq pgSnp Individual from the Extinct Palaeo-Eskimo Saqqaq (Saqqaq Genome Project) 3 174 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Individual from the Extinct Palaeo-Eskimo Saqqaq (Saqqaq Genome Project)\ origAssembly hg18\ parent pgSnp1off\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel Saqqaq\ subGroups view=N_1off id=NS_Saqqaq type=SNP\ track pgSaqqaq\ visibility pack\ wgEncodeHaibMethylRrbsBcskeletalmuscle0111002BiochainSitesRep1 Skeletal_02 1 bed 9 + Skeletal Muscle BC 01-11002 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 174 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Skeletal Muscle BC 01-11002 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Skeletal_02 1\ subGroups cellType=t3SKELETALMUSCLEBC0111002 obtainedBy=BioChain treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBcskeletalmuscle0111002BiochainSitesRep1\ type bed 9 +\ wgEncodeCshlLongRnaSeqA549CellPapPlusRawSigRep2 A549 cel pA+ + 2 bigWig 1.000000 956633.000000 A549 whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 175 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel A549 cel pA+ + 2\ subGroups view=PlusSignal cellType=t2A549 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqA549CellPapPlusRawSigRep2\ type bigWig 1.000000 956633.000000\ wgEncodeBroadHistoneA549H3k04me2Etoh02Sig A549 EtOH H3K4m2 bigWig 0.040000 719.159973 A549 EtOH 0.02% H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 175 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 EtOH 0.02% H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 EtOH H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k04me2Etoh02Sig\ type bigWig 0.040000 719.159973\ wgEncodeUwHistoneAoafH3k4me3StdHotspotsRep1 AoAF H3K4M3 Ht 1 broadPeak AoAF H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 175 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoAF H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel AoAF H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3AOAF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAoafH3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseGm12864HotspotsRep1 GM12864 Ht 1 broadPeak GM12864 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 175 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12864 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel GM12864 Ht 1\ subGroups view=Hot cellType=t3GM12864 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm12864HotspotsRep1\ type broadPeak\ encTfChipPkENCFF048JKT GM12878 REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in GM12878 from ENCODE 3 (ENCFF048JKT) 1 175 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of REST in GM12878 from ENCODE 3 (ENCFF048JKT)\ parent encTfChipPk off\ shortLabel GM12878 REST 2\ subGroups cellType=GM12878 factor=REST\ track encTfChipPkENCFF048JKT\ wgEncodeUwTfbsGm12875CtcfStdPkRep1 GM75 CTCF Pk 1 narrowPeak GM12875 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 175 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12875 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM75 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3GM12875 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12875CtcfStdPkRep1\ type narrowPeak\ wgEncodeHaibTfbsGm12878Usf1Pcr2xPkRep1 GM78 USF1 PCR2 1 broadPeak GM12878 USF-1 PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 175 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 USF-1 PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel GM78 USF1 PCR2 1\ subGroups view=Peaks factor=USF1 cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Usf1Pcr2xPkRep1\ type broadPeak\ wgEncodeOpenChromDnaseHepatocytesPk Hepatocytes Pk narrowPeak Hepatocytes DNaseI HS Peaks from ENCODE/Duke 3 175 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Hepatocytes DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Hepatocytes Pk\ subGroups view=Peaks cellType=t3HEPATOCYTES treatment=zNONE\ track wgEncodeOpenChromDnaseHepatocytesPk\ type narrowPeak\ wgEncodeRikenCageHepg2NucleusPamPlusSignal HepG nucl pA- + 1 bigWig 0.040000 4464.319824 HepG2 nucleus polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 175 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleus polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HepG nucl pA- + 1\ subGroups view=PlusRawSignal cellType=t2HEPG2 localization=nucleus rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageHepg2NucleusPamPlusSignal\ type bigWig 0.040000 4464.319824\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day12Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_forward 0 175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep2.CNhs13724.13351-143E3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13351-143E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day12Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_forward 1 175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep2.CNhs13724.13351-143E3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13351-143E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CytosolShorttotalMinusRep1 IMR9 cyto - 1 bigWig 1.000000 3122334.000000 IMR90 cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 175 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 cyto - 1\ subGroups view=MinusSignal cellType=t2IMR90 localization=CYTOSOL protocol=NONE rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90CytosolShorttotalMinusRep1\ type bigWig 1.000000 3122334.000000\ wgEncodeSydhTfbsK562Cdpsc6327IggrabPk K562 CDP IgR narrowPeak K562 CDP (SC-6327) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 175 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CDP (SC-6327) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 CDP IgR\ subGroups view=Peaks factor=CDPSC6327 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Cdpsc6327IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsHaibK562Egr1V0416101UniPk K562 EGR1 narrowPeak K562 TFBS Uniform Peaks of Egr-1 from ENCODE/HudsonAlpha/Analysis 1 175 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Egr-1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 EGR1\ subGroups tier=a10 cellType=a10K562 factor=EGR1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Egr1V0416101UniPk\ wgEncodeOpenChromChipPancreasocCtcfPkRep1 Pancreas CTCF Pk narrowPeak Pancreas OC CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 175 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Pancreas OC CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel Pancreas CTCF Pk\ subGroups view=Peaks factor=CTCF cellType=t3PANCREASOC treatment=AANONE\ track wgEncodeOpenChromChipPancreasocCtcfPkRep1\ type narrowPeak\ wgEncodeUwDgfSaecSig SAEC Sig bigWig 1.000000 42565.000000 SAEC DNaseI DGF Per-base Signal from ENCODE/UW 2 175 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SAEC DNaseI DGF Per-base Signal from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewSignal off\ shortLabel SAEC Sig\ subGroups view=Signal cellType=t3SAEC treatment=aNONE rep=rep1\ track wgEncodeUwDgfSaecSig\ type bigWig 1.000000 42565.000000\ pgSaqqaqHc Saqqaq HC pgSnp Individual from the Extinct Palaeo-Eskimo Saqqaq, high confidence SNPs 3 175 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Individual from the Extinct Palaeo-Eskimo Saqqaq, high confidence SNPs\ origAssembly hg18\ parent pgSnp1off\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel Saqqaq HC\ subGroups view=N_1off id=NS_Saqqaq type=SNP\ track pgSaqqaqHc\ visibility pack\ wgEncodeHaibMethylRrbsBcskeletalmuscle0111002BiochainSitesRep2 Skeletal_02 2 bed 9 + Skeletal Muscle BC 01-11002 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 175 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Skeletal Muscle BC 01-11002 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Skeletal_02 2\ subGroups cellType=t3SKELETALMUSCLEBC0111002 obtainedBy=BioChain treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBcskeletalmuscle0111002BiochainSitesRep2\ type bed 9 +\ wgEncodeCshlLongRnaSeqA549CytosolPapAlnRep3 A549 cyt pA+ A 1 bam A549 cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 176 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel A549 cyt pA+ A 1\ subGroups view=Alignments cellType=t2A549 localization=CYTOSOL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqA549CytosolPapAlnRep3\ type bam\ wgEncodeBroadHistoneA549H3k04me3Dex100nmPk A549 DEX H3K4m3 broadPeak A549 DEX 100 nM H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 176 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 DEX 100 nM H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 DEX H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549H3k04me3Dex100nmPk\ type broadPeak\ wgEncodeUwHistoneAoafH3k4me3StdPkRep1 AoAF H3K4M3 Pk 1 narrowPeak AoAF H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 176 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoAF H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel AoAF H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3AOAF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAoafH3k4me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseGm12864PkRep1 GM12864 Pk 1 narrowPeak GM12864 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 176 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12864 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel GM12864 Pk 1\ subGroups view=Peaks cellType=t3GM12864 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm12864PkRep1\ type narrowPeak\ encTfChipPkENCFF402FYF GM12878 RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in GM12878 from ENCODE 3 (ENCFF402FYF) 1 176 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of RFX5 in GM12878 from ENCODE 3 (ENCFF402FYF)\ parent encTfChipPk off\ shortLabel GM12878 RFX5\ subGroups cellType=GM12878 factor=RFX5\ track encTfChipPkENCFF402FYF\ wgEncodeUwTfbsGm12875CtcfStdRawRep1 GM75 CTCF Sg 1 bigWig 1.000000 4128.000000 GM12875 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 176 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12875 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM75 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3GM12875 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12875CtcfStdRawRep1\ type bigWig 1.000000 4128.000000\ wgEncodeHaibTfbsGm12878Usf1Pcr2xRawRep1 GM78 USF1 PCR2 1 bigWig 0.176730 133.828995 GM12878 USF-1 PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 176 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 USF-1 PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel GM78 USF1 PCR2 1\ subGroups view=RawSignal factor=USF1 cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Usf1Pcr2xRawRep1\ type bigWig 0.176730 133.828995\ wgEncodeOpenChromDnaseHepatocytesSig Hepatocytes DS bigWig 0.000000 1.185800 Hepatocytes DNaseI HS Density Signal from ENCODE/Duke 2 176 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Hepatocytes DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Hepatocytes DS\ subGroups view=SIG cellType=t3HEPATOCYTES treatment=zNONE\ track wgEncodeOpenChromDnaseHepatocytesSig\ type bigWig 0.000000 1.185800\ wgEncodeRikenCageHepg2NucleusPamMinusSignal HepG nucl pA- - 1 bigWig 0.040000 4464.319824 HepG2 nucleus polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 176 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleus polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HepG nucl pA- - 1\ subGroups view=MinusRawSignal cellType=t2HEPG2 localization=nucleus rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageHepg2NucleusPamMinusSignal\ type bigWig 0.040000 4464.319824\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_ctss_rev Hes3-gfpCardiomyocyticInduction_Day12Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_reverse 0 176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep2.CNhs13724.13351-143E3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13351-143E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_tpm_rev Hes3-gfpCardiomyocyticInduction_Day12Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_reverse 1 176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep2.CNhs13724.13351-143E3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13351-143E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CytosolShorttotalMinusRep2 IMR9 cyto - 2 bigWig 1.000000 28516262.000000 IMR90 cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 176 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 cyto - 2\ subGroups view=MinusSignal cellType=t2IMR90 localization=CYTOSOL protocol=NONE rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90CytosolShorttotalMinusRep2\ type bigWig 1.000000 28516262.000000\ wgEncodeSydhTfbsK562Cdpsc6327IggrabSig K562 CDP IgR bigWig 1.000000 22724.000000 K562 CDP (SC-6327) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 176 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CDP (SC-6327) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 CDP IgR\ subGroups view=Signal factor=CDPSC6327 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Cdpsc6327IggrabSig\ type bigWig 1.000000 22724.000000\ wgEncodeAwgTfbsHaibK562Elf1sc631V0416102UniPk K562 ELF1 narrowPeak K562 TFBS Uniform Peaks of ELF1_(SC-631) from ENCODE/HudsonAlpha/Analysis 1 176 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of ELF1_(SC-631) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 ELF1\ subGroups tier=a10 cellType=a10K562 factor=ELF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Elf1sc631V0416102UniPk\ wgEncodeOpenChromChipPancreasocCtcfSigRep1 Pancreas CTCF DS bigWig 0.000000 9.584400 Pancreas OC CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 176 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Pancreas OC CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Pancreas CTCF DS\ subGroups view=SIG factor=CTCF cellType=t3PANCREASOC treatment=AANONE\ track wgEncodeOpenChromChipPancreasocCtcfSigRep1\ type bigWig 0.000000 9.584400\ wgEncodeUwDgfSaecRaw SAEC Raw bigWig 1.000000 119372.000000 SAEC DNaseI DGF Raw Signal from ENCODE/UW 0 176 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SAEC DNaseI DGF Raw Signal from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewzRaw off\ shortLabel SAEC Raw\ subGroups view=zRaw cellType=t3SAEC treatment=aNONE rep=rep1\ track wgEncodeUwDgfSaecRaw\ type bigWig 1.000000 119372.000000\ wgEncodeHaibMethylRrbsBcskeletalmuscleh12817nBiochainSitesRep1 Skeletal_7N 1 bed 9 + Skeletal Muscle BC H12817N Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 176 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Skeletal Muscle BC H12817N Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Skeletal_7N 1\ subGroups cellType=t3SKELETALMUSCLEH12817N obtainedBy=BioChain treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBcskeletalmuscleh12817nBiochainSitesRep1\ type bed 9 +\ wgEncodeCshlLongRnaSeqA549CytosolPapAlnRep4 A549 cyt pA+ A 2 bam A549 cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 177 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel A549 cyt pA+ A 2\ subGroups view=Alignments cellType=t2A549 localization=CYTOSOL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqA549CytosolPapAlnRep4\ type bam\ wgEncodeBroadHistoneA549H3k04me3Dex100nmSig A549 DEX H3K4m3 bigWig 0.040000 27848.640625 A549 DEX 100 nM H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 177 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 DEX 100 nM H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 DEX H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549H3k04me3Dex100nmSig\ type bigWig 0.040000 27848.640625\ wgEncodeUwHistoneAoafH3k4me3StdRawRep1 AoAF H3K4M3 Sg 1 bigWig 1.000000 3446.000000 AoAF H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 177 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AoAF H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AoAF H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3AOAF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAoafH3k4me3StdRawRep1\ type bigWig 1.000000 3446.000000\ wgEncodeUwDnaseGm12864RawRep1 GM12864 Sg 1 bigWig 1.000000 43191.000000 GM12864 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 177 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12864 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel GM12864 Sg 1\ subGroups view=zRSig cellType=t3GM12864 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm12864RawRep1\ type bigWig 1.000000 43191.000000\ encTfChipPkENCFF248QFF GM12878 RUNX3 narrowPeak Transcription Factor ChIP-seq Peaks of RUNX3 in GM12878 from ENCODE 3 (ENCFF248QFF) 1 177 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of RUNX3 in GM12878 from ENCODE 3 (ENCFF248QFF)\ parent encTfChipPk off\ shortLabel GM12878 RUNX3\ subGroups cellType=GM12878 factor=RUNX3\ track encTfChipPkENCFF248QFF\ wgEncodeUwTfbsGm12875CtcfStdHotspotsRep2 GM75 CTCF Ht 2 broadPeak GM12875 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 177 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12875 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel GM75 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3GM12875 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12875CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsGm12878Usf1Pcr2xPkRep2 GM78 USF1 PCR2 2 broadPeak GM12878 USF-1 PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 177 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 USF-1 PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel GM78 USF1 PCR2 2\ subGroups view=Peaks factor=USF1 cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Usf1Pcr2xPkRep2\ type broadPeak\ wgEncodeOpenChromDnaseHepatocytesBaseOverlapSignal Hepatocytes OS bigWig 0.000000 242.000000 Hepatocytes DNaseI HS Overlap Signal from ENCODE/Duke 2 177 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Hepatocytes DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Hepatocytes OS\ subGroups view=SIGBO cellType=t3HEPATOCYTES treatment=zNONE\ track wgEncodeOpenChromDnaseHepatocytesBaseOverlapSignal\ type bigWig 0.000000 242.000000\ wgEncodeRikenCageHepg2NucleusPamAln HepG nucl pA- A 1 bam HepG2 nucleus polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN 0 177 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleus polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HepG nucl pA- A 1\ subGroups view=Alignments cellType=t2HEPG2 localization=nucleus rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageHepg2NucleusPamAln\ type bam\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day12Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_forward 0 177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep3.CNhs13736.13363-143F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13363-143F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day12Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_forward 1 177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep3.CNhs13736.13363-143F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13363-143F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqImr90CytosolShorttotalPlusRep1 IMR9 cyto + 1 bigWig 1.000000 2846913.000000 IMR90 cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 177 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 cyto + 1\ subGroups view=PlusSignal cellType=t2IMR90 localization=CYTOSOL protocol=NONE rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90CytosolShorttotalPlusRep1\ type bigWig 1.000000 2846913.000000\ wgEncodeSydhTfbsK562CebpbIggrabPk K562 CBPB IgR narrowPeak K562 CEBPB IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 177 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CEBPB IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 CBPB IgR\ subGroups view=Peaks factor=CEBPB cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562CebpbIggrabPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Elk112771IggrabUniPk K562 ELK1 narrowPeak K562 TFBS Uniform Peaks of ELK1_(1277-1) from ENCODE/Stanford/Analysis 1 177 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of ELK1_(1277-1) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 ELK1\ subGroups tier=a10 cellType=a10K562 factor=ELK1 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Elk112771IggrabUniPk\ wgEncodeOpenChromChipPancreasocCtcfBaseOverlapSignalRep1 Pancreas CTCF OS bigWig 0.000000 1414.000000 Pancreas OC CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 177 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Pancreas OC CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel Pancreas CTCF OS\ subGroups view=SIGBO factor=CTCF cellType=t3PANCREASOC treatment=AANONE\ track wgEncodeOpenChromChipPancreasocCtcfBaseOverlapSignalRep1\ type bigWig 0.000000 1414.000000\ wgEncodeUwDgfSknshraHotspots SK-N-SH_RA Hot broadPeak SK-N-SH_RA DNaseI DGF Hotspots from ENCODE/UW 0 177 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel SK-N-SH_RA Hot\ subGroups view=Hotspots cellType=t3SKANSHRA treatment=aNONE rep=rep1\ track wgEncodeUwDgfSknshraHotspots\ type broadPeak\ wgEncodeHaibMethylRrbsBcskeletalmuscleh12817nBiochainSitesRep2 Skeletal_7N 2 bed 9 + Skeletal Muscle BC H12817N Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 177 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Skeletal Muscle BC H12817N Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Skeletal_7N 2\ subGroups cellType=t3SKELETALMUSCLEH12817N obtainedBy=BioChain treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBcskeletalmuscleh12817nBiochainSitesRep2\ type bed 9 +\ wgEncodeCshlLongRnaSeqA549CytosolPapContigs A549 cyt pA+ C bed 6 + A549 cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 178 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel A549 cyt pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2A549 localization=CYTOSOL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqA549CytosolPapContigs\ type bed 6 +\ wgEncodeBroadHistoneA549H3k04me3Etoh02Pk A549 EtOH H3K4m3 broadPeak A549 EtOH 0.02% H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 178 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 EtOH 0.02% H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 EtOH H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k04me3Etoh02Pk\ type broadPeak\ wgEncodeUwHistoneAoafH3k4me3StdHotspotsRep2 AoAF H3K4M3 Ht 2 broadPeak AoAF H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 178 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoAF H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel AoAF H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3AOAF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAoafH3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseGm12865HotspotsRep1 GM12865 Ht 1 broadPeak GM12865 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 178 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12865 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel GM12865 Ht 1\ subGroups view=Hot cellType=t3GM12865 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm12865HotspotsRep1\ type broadPeak\ encTfChipPkENCFF461FGJ GM12878 RXRA narrowPeak Transcription Factor ChIP-seq Peaks of RXRA in GM12878 from ENCODE 3 (ENCFF461FGJ) 1 178 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of RXRA in GM12878 from ENCODE 3 (ENCFF461FGJ)\ parent encTfChipPk off\ shortLabel GM12878 RXRA\ subGroups cellType=GM12878 factor=RXRA\ track encTfChipPkENCFF461FGJ\ wgEncodeUwTfbsGm12875CtcfStdPkRep2 GM75 CTCF Pk 2 narrowPeak GM12875 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 178 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12875 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel GM75 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3GM12875 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12875CtcfStdPkRep2\ type narrowPeak\ wgEncodeHaibTfbsGm12878Usf1Pcr2xRawRep2 GM78 USF1 PCR2 2 bigWig 0.101472 198.022003 GM12878 USF-1 PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 178 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 USF-1 PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel GM78 USF1 PCR2 2\ subGroups view=RawSignal factor=USF1 cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Usf1Pcr2xRawRep2\ type bigWig 0.101472 198.022003\ wgEncodeRikenCageHepg2NucleusPapTssHmm HepG nucl pA+ bed 6 HepG2 nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 178 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HepG nucl pA+\ subGroups view=TssHmm cellType=t2HEPG2 localization=nucleus rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHepg2NucleusPapTssHmm\ type bed 6\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_ctss_rev Hes3-gfpCardiomyocyticInduction_Day12Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_reverse 0 178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep3.CNhs13736.13363-143F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13363-143F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_tpm_rev Hes3-gfpCardiomyocyticInduction_Day12Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_reverse 1 178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep3.CNhs13736.13363-143F6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13363-143F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseHmecPk HMEC Pk narrowPeak HMEC DNaseI HS Peaks from ENCODE/Duke 3 178 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMEC DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel HMEC Pk\ subGroups view=Peaks cellType=t3HMEC treatment=zNONE\ track wgEncodeOpenChromDnaseHmecPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqImr90CytosolShorttotalPlusRep2 IMR9 cyto + 2 bigWig 1.000000 28484972.000000 IMR90 cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 178 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 cyto + 2\ subGroups view=PlusSignal cellType=t2IMR90 localization=CYTOSOL protocol=NONE rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90CytosolShorttotalPlusRep2\ type bigWig 1.000000 28484972.000000\ wgEncodeSydhTfbsK562CebpbIggrabSig K562 CBPB IgR bigWig 1.000000 16377.000000 K562 CEBPB IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 178 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CEBPB IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 CBPB IgR\ subGroups view=Signal factor=CEBPB cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562CebpbIggrabSig\ type bigWig 1.000000 16377.000000\ wgEncodeAwgTfbsBroadK562P300UniPk K562 EP300 b narrowPeak K562 TFBS Uniform Peaks of p300 from ENCODE/Broad/Analysis 1 178 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of p300 from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 EP300 b\ subGroups tier=a10 cellType=a10K562 factor=EP300 lab=Broad\ track wgEncodeAwgTfbsBroadK562P300UniPk\ wgEncodeOpenChromChipPancreasocInputSig Pancreas Input DS bigWig 0.000000 3.097700 Pancreas OC Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 178 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Pancreas OC Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Pancreas Input DS\ subGroups view=SIG factor=zCTRL cellType=t3PANCREASOC treatment=AANONE\ track wgEncodeOpenChromChipPancreasocInputSig\ type bigWig 0.000000 3.097700\ wgEncodeUwDgfSknshraPk SK-N-SH_RA Pk narrowPeak SK-N-SH_RA DNaseI DGF Peaks from ENCODE/UW 0 178 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel SK-N-SH_RA Pk\ subGroups view=Peaks cellType=t3SKANSHRA treatment=aNONE rep=rep1\ track wgEncodeUwDgfSknshraPk\ type narrowPeak\ wgEncodeHaibMethylRrbsBcskin0111002BiochainSitesRep1 Skin BC 1 bed 9 + Skin BC 01-11002 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 178 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Skin BC 01-11002 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Skin BC 1\ subGroups cellType=t3SKINBC0111002 obtainedBy=BioChain treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBcskin0111002BiochainSitesRep1\ type bed 9 +\ wgEncodeCshlLongRnaSeqA549CytosolPapJunctions A549 cyt pA+ J bed 6 + A549 cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 179 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel A549 cyt pA+ J\ subGroups view=Junctions cellType=t2A549 localization=CYTOSOL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqA549CytosolPapJunctions\ type bed 6 +\ wgEncodeBroadHistoneA549H3k04me3Etoh02Sig A549 EtOH H3K4m3 bigWig 0.040000 65926.320312 A549 EtOH 0.02% H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 179 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 EtOH 0.02% H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 EtOH H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k04me3Etoh02Sig\ type bigWig 0.040000 65926.320312\ wgEncodeUwHistoneAoafH3k4me3StdPkRep2 AoAF H3K4M3 Pk 2 narrowPeak AoAF H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 179 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoAF H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel AoAF H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3AOAF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAoafH3k4me3StdPkRep2\ type narrowPeak\ wgEncodeUwDnaseGm12865PkRep1 GM12865 Pk 1 narrowPeak GM12865 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 179 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12865 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel GM12865 Pk 1\ subGroups view=Peaks cellType=t3GM12865 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm12865PkRep1\ type narrowPeak\ encTfChipPkENCFF778DJD GM12878 SIN3A narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in GM12878 from ENCODE 3 (ENCFF778DJD) 1 179 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in GM12878 from ENCODE 3 (ENCFF778DJD)\ parent encTfChipPk off\ shortLabel GM12878 SIN3A\ subGroups cellType=GM12878 factor=SIN3A\ track encTfChipPkENCFF778DJD\ wgEncodeUwTfbsGm12875CtcfStdRawRep2 GM75 CTCF Sg 2 bigWig 1.000000 3639.000000 GM12875 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 179 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12875 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM75 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3GM12875 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsGm12875CtcfStdRawRep2\ type bigWig 1.000000 3639.000000\ wgEncodeHaibTfbsGm12878Yy1sc281Pcr1xPkRep1 GM78 YY1 PCR1 1 broadPeak GM12878 YY1 281 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 179 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 YY1 281 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 YY1 PCR1 1\ subGroups view=Peaks factor=YY1SC281 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Yy1sc281Pcr1xPkRep1\ type broadPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_ctss_fwd H9MelanocyticInduction_Day00Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_forward 0 179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep1%20%28H9EB-1%20d0%29.CNhs12822.12627-134E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12627-134E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_tpm_fwd H9MelanocyticInduction_Day00Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_forward 1 179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep1%20%28H9EB-1%20d0%29.CNhs12822.12627-134E8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12627-134E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageHepg2NucleusPapPlusSignalRep1 HepG nucl pA+ + 1 bigWig 0.050000 82978.382812 HepG2 nucleus polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 179 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleus polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HepG nucl pA+ + 1\ subGroups view=PlusRawSignal cellType=t2HEPG2 localization=nucleus rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHepg2NucleusPapPlusSignalRep1\ type bigWig 0.050000 82978.382812\ wgEncodeOpenChromDnaseHmecSig HMEC DS bigWig 0.000000 2.710200 HMEC DNaseI HS Density Signal from ENCODE/Duke 2 179 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HMEC DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel HMEC DS\ subGroups view=SIG cellType=t3HMEC treatment=zNONE\ track wgEncodeOpenChromDnaseHmecSig\ type bigWig 0.000000 2.710200\ wgEncodeCshlShortRnaSeqImr90CytosolTapContigs IMR9 cyto TAP C bed 6 IMR90 TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL 2 179 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel IMR9 cyto TAP C\ subGroups view=Contigs rep=Pooled cellType=t2IMR90 localization=CYTOSOL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqImr90CytosolTapContigs\ type bed 6\ wgEncodeSydhTfbsK562CfosStdPk K562 cFOS Std narrowPeak K562 c-FOS Standard ChIP-seq Peaks from ENCODE/SYDH 3 179 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 c-FOS Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 cFOS Std\ subGroups view=Peaks factor=CFOS cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562CfosStdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562P300IggrabUniPk K562 EP300 s narrowPeak K562 TFBS Uniform Peaks of p300 from ENCODE/Stanford/Analysis 1 179 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of p300 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 EP300 s\ subGroups tier=a10 cellType=a10K562 factor=EP300 lab=Stanford\ track wgEncodeAwgTfbsSydhK562P300IggrabUniPk\ wgEncodeOpenChromChipProgfibCtcfPkRep1 ProgFib CTCF Pk narrowPeak ProgFib CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 179 0 0 0 127 127 127 1 0 0 regulation 1 longLabel ProgFib CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel ProgFib CTCF Pk\ subGroups treatment=AANONE view=Peaks factor=CTCF cellType=t3PROGFIB\ track wgEncodeOpenChromChipProgfibCtcfPkRep1\ type narrowPeak\ wgEncodeUwDgfSknshraSig SK-N-SH_RA Sig bigWig 1.000000 6713.000000 SK-N-SH_RA DNaseI DGF Per-base Signal from ENCODE/UW 2 179 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH_RA DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel SK-N-SH_RA Sig\ subGroups view=Signal cellType=t3SKANSHRA treatment=aNONE rep=rep1\ track wgEncodeUwDgfSknshraSig\ type bigWig 1.000000 6713.000000\ wgEncodeHaibMethylRrbsBcskin0111002BiochainSitesRep2 Skin BC 2 bed 9 + Skin BC 01-11002 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 179 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Skin BC 01-11002 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Skin BC 2\ subGroups cellType=t3SKINBC0111002 obtainedBy=BioChain treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBcskin0111002BiochainSitesRep2\ type bed 9 +\ wgEncodeCshlLongRnaSeqA549CytosolPapMinusRep3 A549 cyt pA+ - 1 bigWig 1.000000 553569.000000 A549 cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 180 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel A549 cyt pA+ - 1\ subGroups view=MinusSignal cellType=t2A549 localization=CYTOSOL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqA549CytosolPapMinusRep3\ type bigWig 1.000000 553569.000000\ wgEncodeBroadHistoneA549H3k09acEtoh02Pk A549 EtOH H3K9ac broadPeak A549 EtOH 0.02% H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 180 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 EtOH 0.02% H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 EtOH H3K9ac\ subGroups view=Peaks factor=H3K09AC cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k09acEtoh02Pk\ type broadPeak\ wgEncodeUwHistoneAoafH3k4me3StdRawRep2 AoAF H3K4M3 Sg 2 bigWig 1.000000 4590.000000 AoAF H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 180 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AoAF H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AoAF H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3AOAF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneAoafH3k4me3StdRawRep2\ type bigWig 1.000000 4590.000000\ wgEncodeUwDnaseGm12865RawRep1 GM12865 Sg 1 bigWig 1.000000 22282.000000 GM12865 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 180 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12865 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel GM12865 Sg 1\ subGroups view=zRSig cellType=t3GM12865 rep=rep1 treatment=None\ track wgEncodeUwDnaseGm12865RawRep1\ type bigWig 1.000000 22282.000000\ encTfChipPkENCFF606WUV GM12878 SIX5 narrowPeak Transcription Factor ChIP-seq Peaks of SIX5 in GM12878 from ENCODE 3 (ENCFF606WUV) 1 180 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of SIX5 in GM12878 from ENCODE 3 (ENCFF606WUV)\ parent encTfChipPk off\ shortLabel GM12878 SIX5\ subGroups cellType=GM12878 factor=SIX5\ track encTfChipPkENCFF606WUV\ wgEncodeUwTfbsGm12875InputStdRawRep1 GM75 In Sg 1 bigWig 1.000000 7544.000000 GM12875 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 180 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12875 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel GM75 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3GM12875 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsGm12875InputStdRawRep1\ type bigWig 1.000000 7544.000000\ wgEncodeHaibTfbsGm12878Yy1sc281Pcr1xRawRep1 GM78 YY1 PCR1 1 bigWig 0.240201 156.850998 GM12878 YY1 281 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 180 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 YY1 281 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 YY1 PCR1 1\ subGroups view=RawSignal factor=YY1SC281 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Yy1sc281Pcr1xRawRep1\ type bigWig 0.240201 156.850998\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_ctss_rev H9MelanocyticInduction_Day00Br1- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_reverse 0 180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep1%20%28H9EB-1%20d0%29.CNhs12822.12627-134E8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12627-134E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_tpm_rev H9MelanocyticInduction_Day00Br1- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_reverse 1 180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep1%20%28H9EB-1%20d0%29.CNhs12822.12627-134E8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12627-134E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageHepg2NucleusPapPlusSignalRep2 HepG nucl pA+ + 2 bigWig 0.050000 51112.691406 HepG2 nucleus polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 180 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleus polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HepG nucl pA+ + 2\ subGroups view=PlusRawSignal cellType=t2HEPG2 localization=nucleus rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHepg2NucleusPapPlusSignalRep2\ type bigWig 0.050000 51112.691406\ wgEncodeOpenChromDnaseHmecBaseOverlapSignal HMEC OS bigWig 0.000000 495.000000 HMEC DNaseI HS Overlap Signal from ENCODE/Duke 2 180 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HMEC DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel HMEC OS\ subGroups view=SIGBO cellType=t3HMEC treatment=zNONE\ track wgEncodeOpenChromDnaseHmecBaseOverlapSignal\ type bigWig 0.000000 495.000000\ wgEncodeCshlShortRnaSeqImr90CytosolShorttotalTapMinusRep1 IMR9 cyto TAP - 1 bigWig 1.000000 15492213.000000 IMR90 TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 180 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 cyto TAP - 1\ subGroups view=MinusSignal cellType=t2IMR90 localization=CYTOSOL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90CytosolShorttotalTapMinusRep1\ type bigWig 1.000000 15492213.000000\ wgEncodeSydhTfbsK562CfosStdSig K562 cFOS Std bigWig 0.000000 10413.599609 K562 c-FOS Standard ChIP-seq Signal from ENCODE/SYDH 2 180 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 c-FOS Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 cFOS Std\ subGroups view=Signal factor=CFOS cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562CfosStdSig\ type bigWig 0.000000 10413.599609\ wgEncodeAwgTfbsHaibK562Ets1V0416101UniPk K562 ETS1 narrowPeak K562 TFBS Uniform Peaks of ETS1 from ENCODE/HudsonAlpha/Analysis 1 180 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of ETS1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 ETS1\ subGroups tier=a10 cellType=a10K562 factor=ETS1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Ets1V0416101UniPk\ wgEncodeOpenChromChipProgfibCtcfSig ProgFib CTCF DS bigWig 0.000000 4.544500 ProgFib CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 180 0 0 0 127 127 127 1 0 0 regulation 0 longLabel ProgFib CTCF TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel ProgFib CTCF DS\ subGroups treatment=AANONE view=SIG factor=CTCF cellType=t3PROGFIB\ track wgEncodeOpenChromChipProgfibCtcfSig\ type bigWig 0.000000 4.544500\ wgEncodeUwDgfSknshraRaw SK-N-SH_RA Raw bigWig 1.000000 36298.000000 SK-N-SH_RA DNaseI DGF Raw Signal from ENCODE/UW 0 180 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH_RA DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel SK-N-SH_RA Raw\ subGroups view=zRaw cellType=t3SKANSHRA treatment=aNONE rep=rep1\ track wgEncodeUwDgfSknshraRaw\ type bigWig 1.000000 36298.000000\ wgEncodeHaibMethylRrbsSkmcUwSitesRep1 SKMC 1 bed 9 + SKMC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 180 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SKMC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel SKMC 1\ subGroups cellType=t3SKMC obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsSkmcUwSitesRep1\ type bed 9 +\ wgEncodeCshlLongRnaSeqA549CytosolPapMinusRep4 A549 cyt pA+ - 2 bigWig 1.000000 478575.000000 A549 cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 181 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel A549 cyt pA+ - 2\ subGroups view=MinusSignal cellType=t2A549 localization=CYTOSOL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqA549CytosolPapMinusRep4\ type bigWig 1.000000 478575.000000\ wgEncodeBroadHistoneA549H3k09acEtoh02Sig A549 EtOH H3K9ac bigWig 0.040000 14415.719727 A549 EtOH 0.02% H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 181 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 EtOH 0.02% H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 EtOH H3K9ac\ subGroups view=Signal factor=H3K09AC cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k09acEtoh02Sig\ type bigWig 0.040000 14415.719727\ wgEncodeUwHistoneAoafInputStdRawRep1 AoAF In Sg 1 bigWig 1.000000 17667.000000 AoAF Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 181 0 0 0 127 127 127 0 0 0 regulation 0 longLabel AoAF Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel AoAF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3AOAF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneAoafInputStdRawRep1\ type bigWig 1.000000 17667.000000\ wgEncodeUwDnaseGm12865HotspotsRep2 GM12865 Ht 2 broadPeak GM12865 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 181 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12865 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel GM12865 Ht 2\ subGroups view=Hot cellType=t3GM12865 rep=rep2 treatment=None\ track wgEncodeUwDnaseGm12865HotspotsRep2\ type broadPeak\ encTfChipPkENCFF142EVF GM12878 SKIL narrowPeak Transcription Factor ChIP-seq Peaks of SKIL in GM12878 from ENCODE 3 (ENCFF142EVF) 1 181 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of SKIL in GM12878 from ENCODE 3 (ENCFF142EVF)\ parent encTfChipPk off\ shortLabel GM12878 SKIL\ subGroups cellType=GM12878 factor=SKIL\ track encTfChipPkENCFF142EVF\ wgEncodeHaibTfbsGm12878Yy1sc281Pcr1xPkRep2 GM78 YY1 PCR1 2 broadPeak GM12878 YY1 281 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 181 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 YY1 281 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 YY1 PCR1 2\ subGroups view=Peaks factor=YY1SC281 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Yy1sc281Pcr1xPkRep2\ type broadPeak\ wgEncodeUwTfbsH7esInputStdDiffa2dRawRep1 H7 In 2d Sg 1 bigWig 1.000000 9642.000000 H7-HESC Input diffProtA 2d TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 181 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-HESC Input diffProtA 2d TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel H7 In 2d Sg 1\ subGroups view=zRSig factor=zInput cellType=t3H7HESC treatment=DIFFA2D rep=rep1\ track wgEncodeUwTfbsH7esInputStdDiffa2dRawRep1\ type bigWig 1.000000 9642.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_ctss_fwd H9MelanocyticInduction_Day00Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_forward 0 181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep2%20%28H9EB-2%20d0%29.CNhs12825.12725-135G7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12725-135G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_tpm_fwd H9MelanocyticInduction_Day00Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_forward 1 181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep2%20%28H9EB-2%20d0%29.CNhs12825.12725-135G7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12725-135G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageHepg2NucleusPapMinusSignalRep1 HepG nucl pA+ - 1 bigWig 0.050000 4378.689941 HepG2 nucleus polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 181 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleus polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HepG nucl pA+ - 1\ subGroups view=MinusRawSignal cellType=t2HEPG2 localization=nucleus rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHepg2NucleusPapMinusSignalRep1\ type bigWig 0.050000 4378.689941\ wgEncodeOpenChromDnaseHpde6e6e7Pk HPDE6-E6E7 Pk narrowPeak HPDE6-E6E7 DNaseI HS Peaks from ENCODE/Duke 3 181 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HPDE6-E6E7 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel HPDE6-E6E7 Pk\ subGroups view=Peaks cellType=t3HPDE6E6E7 treatment=zNONE\ track wgEncodeOpenChromDnaseHpde6e6e7Pk\ type narrowPeak\ wgEncodeCshlShortRnaSeqImr90CytosolShorttotalTapMinusRep2 IMR9 cyto TAP - 2 bigWig 1.000000 18509746.000000 IMR90 TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 181 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 cyto TAP - 2\ subGroups view=MinusSignal cellType=t2IMR90 localization=CYTOSOL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90CytosolShorttotalTapMinusRep2\ type bigWig 1.000000 18509746.000000\ wgEncodeSydhTfbsK562Chd2ab68301IggrabPk K562 CHD2 IgR narrowPeak K562 CHD2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 181 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CHD2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks on\ shortLabel K562 CHD2 IgR\ subGroups view=Peaks factor=CHD2 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Chd2ab68301IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsBroadK562Ezh239875UniPk K562 EZH2 narrowPeak K562 TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis 1 181 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 EZH2\ subGroups tier=a10 cellType=a10K562 factor=EZH2 lab=Broad\ track wgEncodeAwgTfbsBroadK562Ezh239875UniPk\ wgEncodeOpenChromChipProgfibCtcfBaseOverlapSignal ProgFib CTCF OS bigWig 0.000000 1963.000000 ProgFib CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 181 0 0 0 127 127 127 1 0 0 regulation 0 longLabel ProgFib CTCF TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel ProgFib CTCF OS\ subGroups treatment=AANONE view=SIGBO factor=CTCF cellType=t3PROGFIB\ track wgEncodeOpenChromChipProgfibCtcfBaseOverlapSignal\ type bigWig 0.000000 1963.000000\ wgEncodeHaibMethylRrbsSkmcUwSitesRep2 SKMC 2 bed 9 + SKMC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 181 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SKMC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel SKMC 2\ subGroups cellType=t3SKMC obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsSkmcUwSitesRep2\ type bed 9 +\ wgEncodeUwDgfSkmcHotspots SKMC Hot broadPeak SKMC DNaseI DGF Hotspots from ENCODE/UW 0 181 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SKMC DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel SKMC Hot\ subGroups view=Hotspots cellType=t3SKMC treatment=aNONE rep=rep1\ track wgEncodeUwDgfSkmcHotspots\ type broadPeak\ wgEncodeCshlLongRnaSeqA549CytosolPapPlusRep3 A549 cyt pA+ + 1 bigWig 1.000000 770362.000000 A549 cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 182 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel A549 cyt pA+ + 1\ subGroups view=PlusSignal cellType=t2A549 localization=CYTOSOL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqA549CytosolPapPlusRep3\ type bigWig 1.000000 770362.000000\ wgEncodeBroadHistoneA549H3k09me3Etoh02Pk A549 EtOH H3K9m3 broadPeak A549 EtOH 0.02% H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 182 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 EtOH 0.02% H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 EtOH H3K9m3\ subGroups view=Peaks factor=H3K09ME3 cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k09me3Etoh02Pk\ type broadPeak\ wgEncodeUwHistoneBe2cH3k04me3StdHotspotsRep1 BE2_C H3K4M3 Ht 1 broadPeak BE2_C H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 182 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BE2_C H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel BE2_C H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3BE2C rep=rep1 treatment=zNone\ track wgEncodeUwHistoneBe2cH3k04me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseGm12865PkRep2 GM12865 Pk 2 narrowPeak GM12865 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 182 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12865 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel GM12865 Pk 2\ subGroups view=Peaks cellType=t3GM12865 rep=rep2 treatment=None\ track wgEncodeUwDnaseGm12865PkRep2\ type narrowPeak\ encTfChipPkENCFF632MBO GM12878 SMAD1 narrowPeak Transcription Factor ChIP-seq Peaks of SMAD1 in GM12878 from ENCODE 3 (ENCFF632MBO) 1 182 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of SMAD1 in GM12878 from ENCODE 3 (ENCFF632MBO)\ parent encTfChipPk off\ shortLabel GM12878 SMAD1\ subGroups cellType=GM12878 factor=SMAD1\ track encTfChipPkENCFF632MBO\ wgEncodeHaibTfbsGm12878Yy1sc281Pcr1xRawRep2 GM78 YY1 PCR1 2 bigWig 0.206929 143.660995 GM12878 YY1 281 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 182 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 YY1 281 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 YY1 PCR1 2\ subGroups view=RawSignal factor=YY1SC281 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Yy1sc281Pcr1xRawRep2\ type bigWig 0.206929 143.660995\ wgEncodeUwTfbsH7esInputStdDiffa5dRawRep1 H7 In 5d Sg 1 bigWig 1.000000 10821.000000 H7-HESC Input diffProtA 5d TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 182 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-HESC Input diffProtA 5d TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel H7 In 5d Sg 1\ subGroups view=zRSig factor=zInput cellType=t3H7HESC treatment=DIFFA5D rep=rep1\ track wgEncodeUwTfbsH7esInputStdDiffa5dRawRep1\ type bigWig 1.000000 10821.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_ctss_rev H9MelanocyticInduction_Day00Br2- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_reverse 0 182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep2%20%28H9EB-2%20d0%29.CNhs12825.12725-135G7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12725-135G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_tpm_rev H9MelanocyticInduction_Day00Br2- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_reverse 1 182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep2%20%28H9EB-2%20d0%29.CNhs12825.12725-135G7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12725-135G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageHepg2NucleusPapMinusSignalRep2 HepG nucl pA+ - 2 bigWig 0.050000 5314.419922 HepG2 nucleus polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 182 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleus polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HepG nucl pA+ - 2\ subGroups view=MinusRawSignal cellType=t2HEPG2 localization=nucleus rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHepg2NucleusPapMinusSignalRep2\ type bigWig 0.050000 5314.419922\ wgEncodeOpenChromDnaseHpde6e6e7Sig HPDE6-E6E7 DS bigWig 0.000000 0.568300 HPDE6-E6E7 DNaseI HS Density Signal from ENCODE/Duke 2 182 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HPDE6-E6E7 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel HPDE6-E6E7 DS\ subGroups view=SIG cellType=t3HPDE6E6E7 treatment=zNONE\ track wgEncodeOpenChromDnaseHpde6e6e7Sig\ type bigWig 0.000000 0.568300\ wgEncodeCshlShortRnaSeqImr90CytosolShorttotalTapPlusRep1 IMR9 cyto TAP + 1 bigWig 1.000000 6113304.000000 IMR90 TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 182 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 cyto TAP + 1\ subGroups view=PlusSignal cellType=t2IMR90 localization=CYTOSOL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90CytosolShorttotalTapPlusRep1\ type bigWig 1.000000 6113304.000000\ wgEncodeSydhTfbsK562Chd2ab68301IggrabSig K562 CHD2 IgR bigWig 1.000000 18423.000000 K562 CHD2 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 182 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CHD2 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal on\ shortLabel K562 CHD2 IgR\ subGroups view=Signal factor=CHD2 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Chd2ab68301IggrabSig\ type bigWig 1.000000 18423.000000\ wgEncodeAwgTfbsUchicagoK562EfosUniPk K562 FOS i narrowPeak K562 TFBS Uniform Peaks of eGFP-FOS from ENCODE/UChicago/Analysis 1 182 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of eGFP-FOS from ENCODE/UChicago/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 FOS i\ subGroups tier=a10 cellType=a10K562 factor=FOS lab=UChicago\ track wgEncodeAwgTfbsUchicagoK562EfosUniPk\ wgEncodeOpenChromChipProgfibPol2PkRep1 ProgFib Pol2 Pk narrowPeak ProgFib Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 182 0 0 0 127 127 127 1 0 0 regulation 1 longLabel ProgFib Pol2 TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel ProgFib Pol2 Pk\ subGroups treatment=AANONE view=Peaks factor=POL2 cellType=t3PROGFIB\ track wgEncodeOpenChromChipProgfibPol2PkRep1\ type narrowPeak\ wgEncodeHaibMethylRrbsSknmcHaibSitesRep1 SK-N-MC 1 bed 9 + SK-N-MC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 182 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-MC Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel SK-N-MC 1\ subGroups cellType=t3SKnMC obtainedBy=HAIB treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsSknmcHaibSitesRep1\ type bed 9 +\ wgEncodeUwDgfSkmcPkV2 SKMC Pk narrowPeak SKMC DNaseI DGF Peaks from ENCODE/UW 0 182 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SKMC DNaseI DGF Peaks from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDgfViewPeaks off\ shortLabel SKMC Pk\ subGroups view=Peaks cellType=t3SKMC treatment=aNONE rep=rep1\ track wgEncodeUwDgfSkmcPkV2\ type narrowPeak\ wgEncodeCshlLongRnaSeqA549CytosolPapPlusRep4 A549 cyt pA+ + 2 bigWig 1.000000 686611.000000 A549 cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 183 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel A549 cyt pA+ + 2\ subGroups view=PlusSignal cellType=t2A549 localization=CYTOSOL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqA549CytosolPapPlusRep4\ type bigWig 1.000000 686611.000000\ wgEncodeBroadHistoneA549H3k09me3Etoh02Sig A549 EtOH H3K9m3 bigWig 0.040000 785.440002 A549 EtOH 0.02% H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 183 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 EtOH 0.02% H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 EtOH H3K9m3\ subGroups view=Signal factor=H3K09ME3 cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k09me3Etoh02Sig\ type bigWig 0.040000 785.440002\ wgEncodeUwHistoneBe2cH3k04me3StdPkRep1 BE2_C H3K4M3 Pk 1 narrowPeak BE2_C H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 183 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BE2_C H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel BE2_C H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3BE2C rep=rep1 treatment=zNone\ track wgEncodeUwHistoneBe2cH3k04me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseGm12865RawRep2 GM12865 Sg 2 bigWig 1.000000 18347.000000 GM12865 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 183 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12865 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel GM12865 Sg 2\ subGroups view=zRSig cellType=t3GM12865 rep=rep2 treatment=None\ track wgEncodeUwDnaseGm12865RawRep2\ type bigWig 1.000000 18347.000000\ encTfChipPkENCFF134XDY GM12878 SMAD5 narrowPeak Transcription Factor ChIP-seq Peaks of SMAD5 in GM12878 from ENCODE 3 (ENCFF134XDY) 1 183 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of SMAD5 in GM12878 from ENCODE 3 (ENCFF134XDY)\ parent encTfChipPk off\ shortLabel GM12878 SMAD5\ subGroups cellType=GM12878 factor=SMAD5\ track encTfChipPkENCFF134XDY\ wgEncodeHaibTfbsGm12878Zbtb33Pcr1xPkRep1 GM78 ZBTB33 1 broadPeak GM12878 ZBTB33 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 183 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ZBTB33 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 ZBTB33 1\ subGroups view=Peaks factor=ZBTB33 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Zbtb33Pcr1xPkRep1\ type broadPeak\ wgEncodeUwTfbsH7esInputStdDiffa9dRawRep1 H7 In 9d Sg 1 bigWig 1.000000 8651.000000 H7-HESC Input diffProtA 9d TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 183 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-HESC Input diffProtA 9d TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel H7 In 9d Sg 1\ subGroups view=zRSig factor=zInput cellType=t3H7HESC treatment=DIFFA9D rep=rep1\ track wgEncodeUwTfbsH7esInputStdDiffa9dRawRep1\ type bigWig 1.000000 8651.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_ctss_fwd H9MelanocyticInduction_Day00Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_forward 0 183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep3%20%28H9EB-3%20d0%29.CNhs12908.12823-136I6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12823-136I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_tpm_fwd H9MelanocyticInduction_Day00Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_forward 1 183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep3%20%28H9EB-3%20d0%29.CNhs12908.12823-136I6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12823-136I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageHepg2NucleusPapAlnRep1 HepG nucl pA+ A 1 bam HepG2 nucleus polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 183 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleus polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HepG nucl pA+ A 1\ subGroups view=Alignments cellType=t2HEPG2 localization=nucleus rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHepg2NucleusPapAlnRep1\ type bam\ wgEncodeOpenChromDnaseHpde6e6e7BaseOverlapSignal HPDE6-E6E7 OS bigWig 0.000000 185.000000 HPDE6-E6E7 DNaseI HS Overlap Signal from ENCODE/Duke 2 183 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HPDE6-E6E7 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel HPDE6-E6E7 OS\ subGroups view=SIGBO cellType=t3HPDE6E6E7 treatment=zNONE\ track wgEncodeOpenChromDnaseHpde6e6e7BaseOverlapSignal\ type bigWig 0.000000 185.000000\ wgEncodeCshlShortRnaSeqImr90CytosolShorttotalTapPlusRep2 IMR9 cyto TAP + 2 bigWig 1.000000 18501126.000000 IMR90 TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 183 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 cyto TAP + 2\ subGroups view=PlusSignal cellType=t2IMR90 localization=CYTOSOL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90CytosolShorttotalTapPlusRep2\ type bigWig 1.000000 18501126.000000\ wgEncodeSydhTfbsK562CjunIggrabPk K562 c-Jun IgR narrowPeak K562 c-Jun IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 183 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 c-Jun IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 c-Jun IgR\ subGroups view=Peaks factor=CJUN cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562CjunIggrabPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562CfosUniPk K562 FOS y narrowPeak K562 TFBS Uniform Peaks of c-Fos from ENCODE/Yale/Analysis 1 183 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of c-Fos from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 FOS y\ subGroups tier=a10 cellType=a10K562 factor=FOS lab=Yale\ track wgEncodeAwgTfbsSydhK562CfosUniPk\ wgEncodeOpenChromChipProgfibPol2Sig ProgFib Pol2 DS bigWig 0.000000 5.686900 ProgFib Pol2 TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 183 0 0 0 127 127 127 1 0 0 regulation 0 longLabel ProgFib Pol2 TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel ProgFib Pol2 DS\ subGroups treatment=AANONE view=SIG factor=POL2 cellType=t3PROGFIB\ track wgEncodeOpenChromChipProgfibPol2Sig\ type bigWig 0.000000 5.686900\ wgEncodeHaibMethylRrbsSknmcHaibSitesRep2 SK-N-MC 2 bed 9 + SK-N-MC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 183 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-MC Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel SK-N-MC 2\ subGroups cellType=t3SKnMC obtainedBy=HAIB treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsSknmcHaibSitesRep2\ type bed 9 +\ wgEncodeUwDgfSkmcSig SKMC Sig bigWig 1.000000 31113.000000 SKMC DNaseI DGF Per-base Signal from ENCODE/UW 2 183 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SKMC DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel SKMC Sig\ subGroups view=Signal cellType=t3SKMC treatment=aNONE rep=rep1\ track wgEncodeUwDgfSkmcSig\ type bigWig 1.000000 31113.000000\ wgEncodeBroadHistoneA549H3k27acDex100nmPk A549 DEX H3K27ac broadPeak A549 DEX 100 nM H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 184 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 DEX 100 nM H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 DEX H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549H3k27acDex100nmPk\ type broadPeak\ wgEncodeCshlLongRnaSeqA549NucleusPapAlnRep3 A549 nuc pA+ A 1 bam A549 nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 184 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel A549 nuc pA+ A 1\ subGroups view=Alignments cellType=t2A549 localization=NUCLEUS rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqA549NucleusPapAlnRep3\ type bam\ wgEncodeUwHistoneBe2cH3k04me3StdRawRep1 BE2_C H3K4M3 Sg 1 bigWig 1.000000 29611.000000 BE2_C H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 184 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BE2_C H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel BE2_C H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3BE2C rep=rep1 treatment=zNone\ track wgEncodeUwHistoneBe2cH3k04me3StdRawRep1\ type bigWig 1.000000 29611.000000\ encTfChipPkENCFF478DRD GM12878 SMARCA5 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA5 in GM12878 from ENCODE 3 (ENCFF478DRD) 1 184 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of SMARCA5 in GM12878 from ENCODE 3 (ENCFF478DRD)\ parent encTfChipPk off\ shortLabel GM12878 SMARCA5\ subGroups cellType=GM12878 factor=SMARCA5\ track encTfChipPkENCFF478DRD\ wgEncodeHaibTfbsGm12878Zbtb33Pcr1xRawRep1 GM78 ZBTB33 1 bigWig 0.176821 148.970993 GM12878 ZBTB33 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 184 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ZBTB33 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 ZBTB33 1\ subGroups view=RawSignal factor=ZBTB33 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Zbtb33Pcr1xRawRep1\ type bigWig 0.176821 148.970993\ wgEncodeUwTfbsH7esInputStdRawRep1 H7 In Sg 1 bigWig 1.000000 9514.000000 H7-HESC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 184 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-HESC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel H7 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3H7HESC treatment=aNone rep=rep1\ track wgEncodeUwTfbsH7esInputStdRawRep1\ type bigWig 1.000000 9514.000000\ wgEncodeUwDnaseH7esDiffa14dHotspotsRep1 H7h difPA14 Ht 1 broadPeak H7-hESC diffProtA 14 d DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 184 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC diffProtA 14 d DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel H7h difPA14 Ht 1\ subGroups view=Hot cellType=t3H7HESC treatment=DIFFA14D rep=rep1\ track wgEncodeUwDnaseH7esDiffa14dHotspotsRep1\ type broadPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_ctss_rev H9MelanocyticInduction_Day00Br3- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_reverse 0 184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep3%20%28H9EB-3%20d0%29.CNhs12908.12823-136I6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12823-136I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_tpm_rev H9MelanocyticInduction_Day00Br3- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_reverse 1 184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep3%20%28H9EB-3%20d0%29.CNhs12908.12823-136I6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12823-136I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageHepg2NucleusPapAlnRep2 HepG nucl pA+ A 2 bam HepG2 nucleus polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 184 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleus polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HepG nucl pA+ A 2\ subGroups view=Alignments cellType=t2HEPG2 localization=nucleus rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHepg2NucleusPapAlnRep2\ type bam\ wgEncodeOpenChromDnaseHsmmPk HSMM Pk narrowPeak HSMM DNaseI HS Peaks from ENCODE/Duke 3 184 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel HSMM Pk\ subGroups view=Peaks cellType=t3HSMM treatment=zNONE\ track wgEncodeOpenChromDnaseHsmmPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqImr90NucleusCiptapContigs IMR9 nucl CIP C bed 6 IMR90 CIP-TAP nucleus small RNA-seq Contigs from ENCODE/CSHL 2 184 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 CIP-TAP nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel IMR9 nucl CIP C\ subGroups view=Contigs rep=Pooled cellType=t2IMR90 localization=NUCLEUS protocol=CIPTAP rank=none\ track wgEncodeCshlShortRnaSeqImr90NucleusCiptapContigs\ type bed 6\ wgEncodeSydhTfbsK562CjunIggrabSig K562 c-Jun IgR bigWig 1.000000 440.000000 K562 c-Jun IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 184 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 c-Jun IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 c-Jun IgR\ subGroups view=Signal factor=CJUN cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562CjunIggrabSig\ type bigWig 1.000000 440.000000\ wgEncodeAwgTfbsHaibK562Fosl1sc183V0416101UniPk K562 FOSL1 narrowPeak K562 TFBS Uniform Peaks of FOSL1_(SC-183) from ENCODE/HudsonAlpha/Analysis 1 184 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of FOSL1_(SC-183) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 FOSL1\ subGroups tier=a10 cellType=a10K562 factor=FOSL1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Fosl1sc183V0416101UniPk\ wgEncodeOpenChromChipProgfibPol2BaseOverlapSignal ProgFib Pol2 OS bigWig 0.000000 4358.000000 ProgFib Pol2 TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA 2 184 0 0 0 127 127 127 1 0 0 regulation 0 longLabel ProgFib Pol2 TFBS ChIP-seq Overlap Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel ProgFib Pol2 OS\ subGroups treatment=AANONE view=SIGBO factor=POL2 cellType=t3PROGFIB\ track wgEncodeOpenChromChipProgfibPol2BaseOverlapSignal\ type bigWig 0.000000 4358.000000\ wgEncodeHaibMethylRrbsSknshraUwSitesRep1 SK-N-SH_RA 1 bed 9 + SK-N-SH BC RA Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 184 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH BC RA Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel SK-N-SH_RA 1\ subGroups cellType=t3SKnSHRA obtainedBy=UW treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsSknshraUwSitesRep1\ type bed 9 +\ wgEncodeUwDgfSkmcRaw SKMC Raw bigWig 1.000000 178347.000000 SKMC DNaseI DGF Raw Signal from ENCODE/UW 0 184 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SKMC DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel SKMC Raw\ subGroups view=zRaw cellType=t3SKMC treatment=aNONE rep=rep1\ track wgEncodeUwDgfSkmcRaw\ type bigWig 1.000000 178347.000000\ wgEncodeBroadHistoneA549H3k27acDex100nmSig A549 DEX H3K27ac bigWig 0.040000 741.359985 A549 DEX 100 nM H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 185 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 DEX 100 nM H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 DEX H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549H3k27acDex100nmSig\ type bigWig 0.040000 741.359985\ wgEncodeCshlLongRnaSeqA549NucleusPapAlnRep4 A549 nuc pA+ A 2 bam A549 nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 185 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel A549 nuc pA+ A 2\ subGroups view=Alignments cellType=t2A549 localization=NUCLEUS rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqA549NucleusPapAlnRep4\ type bam\ wgEncodeUwHistoneBe2cH3k04me3StdHotspotsRep2 BE2_C H3K4M3 Ht 2 broadPeak BE2_C H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 185 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BE2_C H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel BE2_C H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3BE2C rep=rep2 treatment=zNone\ track wgEncodeUwHistoneBe2cH3k04me3StdHotspotsRep2\ type broadPeak\ encTfChipPkENCFF686FLD GM12878 SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in GM12878 from ENCODE 3 (ENCFF686FLD) 1 185 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of SMC3 in GM12878 from ENCODE 3 (ENCFF686FLD)\ parent encTfChipPk off\ shortLabel GM12878 SMC3\ subGroups cellType=GM12878 factor=SMC3\ track encTfChipPkENCFF686FLD\ wgEncodeHaibTfbsGm12878Zbtb33Pcr1xPkRep2 GM78 ZBTB33 2 broadPeak GM12878 ZBTB33 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 185 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ZBTB33 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 ZBTB33 2\ subGroups view=Peaks factor=ZBTB33 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Zbtb33Pcr1xPkRep2\ type broadPeak\ wgEncodeUwDnaseH7esDiffa2dHotspotsRep1 H7h difPA2 Ht 1 broadPeak H7-hESC diffProtA 2 d DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 185 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC diffProtA 2 d DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel H7h difPA2 Ht 1\ subGroups view=Hot cellType=t3H7HESC treatment=DIFFA2D rep=rep1\ track wgEncodeUwDnaseH7esDiffa2dHotspotsRep1\ type broadPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_ctss_fwd H9MelanocyticInduction_Day01Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_forward 0 185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep1%20%28H9EB-1%20d1%29.CNhs12823.12628-134E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12628-134E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_tpm_fwd H9MelanocyticInduction_Day01Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_forward 1 185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep1%20%28H9EB-1%20d1%29.CNhs12823.12628-134E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12628-134E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHacCtcfStdHotspotsRep1 HAc CTCF Ht 1 broadPeak HAc CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 185 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAc CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel HAc CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HAC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHacCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeRikenCageHepg2CellPapTssHmmV2 HepG cell pA+ bed 6 HepG2 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 185 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HepG cell pA+\ subGroups view=TssHmm cellType=t2HEPG2 localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHepg2CellPapTssHmmV2\ type bed 6\ wgEncodeOpenChromDnaseHsmmSig HSMM DS bigWig 0.000000 2.424300 HSMM DNaseI HS Density Signal from ENCODE/Duke 2 185 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel HSMM DS\ subGroups view=SIG cellType=t3HSMM treatment=zNONE\ track wgEncodeOpenChromDnaseHsmmSig\ type bigWig 0.000000 2.424300\ wgEncodeCshlShortRnaSeqImr90NucleusShorttotalCiptapMinusRep1 IMR9 nucl CIP - 1 bigWig 1.000000 6502829.000000 IMR90 CIP-TAP nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 185 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 CIP-TAP nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 nucl CIP - 1\ subGroups view=MinusSignal cellType=t2IMR90 localization=NUCLEUS protocol=CIPTAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90NucleusShorttotalCiptapMinusRep1\ type bigWig 1.000000 6502829.000000\ wgEncodeAwgTfbsHaibK562GabpV0416101UniPk K562 GABPA narrowPeak K562 TFBS Uniform Peaks of GABP from ENCODE/HudsonAlpha/Analysis 1 185 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of GABP from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 GABPA\ subGroups tier=a10 cellType=a10K562 factor=GABPA lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562GabpV0416101UniPk\ wgEncodeSydhTfbsK562CjunIfna30StdPk K562 IFa3 cJun Sd narrowPeak K562 c-Jun Standard IFNa 30min ChIP-seq Peaks from ENCODE/SYDH 3 185 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 c-Jun Standard IFNa 30min ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFa3 cJun Sd\ subGroups view=Peaks factor=CJUN cellType=t1K562 control=STD treatment=IFNa30\ track wgEncodeSydhTfbsK562CjunIfna30StdPk\ type narrowPeak\ wgEncodeOpenChromChipProgfibInputSig ProgFib Input DS bigWig 0.000000 3.510000 ProgFib Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA 2 185 0 0 0 127 127 127 1 0 0 regulation 0 longLabel ProgFib Input TFBS ChIP-seq Density Signal ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel ProgFib Input DS\ subGroups treatment=AANONE view=SIG factor=zCTRL cellType=t3PROGFIB\ track wgEncodeOpenChromChipProgfibInputSig\ type bigWig 0.000000 3.510000\ wgEncodeHaibMethylRrbsSknshraUwSitesRep2 SK-N-SH_RA 2 bed 9 + SK-N-SH BC RA Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 185 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH BC RA Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel SK-N-SH_RA 2\ subGroups cellType=t3SKnSHRA obtainedBy=UW treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsSknshraUwSitesRep2\ type bed 9 +\ wgEncodeUwDgfT47dHotspots T-47D Hot broadPeak T-47D DNaseI DGF Hotspots from ENCODE/UW 0 185 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel T-47D Hot\ subGroups view=Hotspots cellType=t3T47D treatment=aNONE rep=rep1\ track wgEncodeUwDgfT47dHotspots\ type broadPeak\ wgEncodeBroadHistoneA549H3k27acEtoh02Pk A549 EtOH H3K27ac broadPeak A549 EtOH 0.02% H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 186 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 EtOH 0.02% H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 EtOH H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k27acEtoh02Pk\ type broadPeak\ wgEncodeCshlLongRnaSeqA549NucleusPapContigs A549 nuc pA+ C bed 6 + A549 nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 186 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel A549 nuc pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2A549 localization=NUCLEUS rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqA549NucleusPapContigs\ type bed 6 +\ wgEncodeUwHistoneBe2cH3k04me3StdPkRep2 BE2_C H3K4M3 Pk 2 narrowPeak BE2_C H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 186 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BE2_C H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel BE2_C H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3BE2C rep=rep2 treatment=zNone\ track wgEncodeUwHistoneBe2cH3k04me3StdPkRep2\ type narrowPeak\ encTfChipPkENCFF909FRA GM12878 SRF 1 narrowPeak Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF909FRA) 1 186 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF909FRA)\ parent encTfChipPk off\ shortLabel GM12878 SRF 1\ subGroups cellType=GM12878 factor=SRF\ track encTfChipPkENCFF909FRA\ wgEncodeHaibTfbsGm12878Zbtb33Pcr1xRawRep2 GM78 ZBTB33 2 bigWig 0.206141 160.584000 GM12878 ZBTB33 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 186 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ZBTB33 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 ZBTB33 2\ subGroups view=RawSignal factor=ZBTB33 cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Zbtb33Pcr1xRawRep2\ type bigWig 0.206141 160.584000\ wgEncodeUwDnaseH7esDiffa5dHotspotsRep1 H7h difPA5 Ht 1 broadPeak H7-hESC diffProtA 5 d DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 186 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC diffProtA 5 d DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel H7h difPA5 Ht 1\ subGroups view=Hot cellType=t3H7HESC treatment=DIFFA5D rep=rep1\ track wgEncodeUwDnaseH7esDiffa5dHotspotsRep1\ type broadPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_ctss_rev H9MelanocyticInduction_Day01Br1- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_reverse 0 186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep1%20%28H9EB-1%20d1%29.CNhs12823.12628-134E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12628-134E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_tpm_rev H9MelanocyticInduction_Day01Br1- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_reverse 1 186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep1%20%28H9EB-1%20d1%29.CNhs12823.12628-134E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12628-134E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHacCtcfStdPkRep1 HAc CTCF Pk 1 narrowPeak HAc CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 186 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAc CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HAc CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HAC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHacCtcfStdPkRep1\ type narrowPeak\ wgEncodeRikenCageHepg2CellPapPlusSignalRep1 HepG cell pA+ + 1 bigWig 0.040000 32286.490234 HepG2 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 186 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HepG cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t2HEPG2 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHepg2CellPapPlusSignalRep1\ type bigWig 0.040000 32286.490234\ wgEncodeOpenChromDnaseHsmmBaseOverlapSignal HSMM OS bigWig 0.000000 341.000000 HSMM DNaseI HS Overlap Signal from ENCODE/Duke 2 186 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel HSMM OS\ subGroups view=SIGBO cellType=t3HSMM treatment=zNONE\ track wgEncodeOpenChromDnaseHsmmBaseOverlapSignal\ type bigWig 0.000000 341.000000\ wgEncodeCshlShortRnaSeqImr90NucleusShorttotalCiptapMinusRep2 IMR9 nucl CIP - 2 bigWig 1.000000 27604254.000000 IMR90 CIP-TAP nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 186 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 CIP-TAP nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 nucl CIP - 2\ subGroups view=MinusSignal cellType=t2IMR90 localization=NUCLEUS protocol=CIPTAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90NucleusShorttotalCiptapMinusRep2\ type bigWig 1.000000 27604254.000000\ wgEncodeAwgTfbsSydhK562Gata1UcdUniPk K562 GATA1 narrowPeak K562 TFBS Uniform Peaks of GATA-1 from ENCODE/USC/Analysis 1 186 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of GATA-1 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 GATA1\ subGroups tier=a10 cellType=a10K562 factor=GATA1 lab=USC\ track wgEncodeAwgTfbsSydhK562Gata1UcdUniPk\ wgEncodeSydhTfbsK562CjunIfna30StdSig K562 IFa3 cJun Sd bigWig 1.000000 38075.000000 K562 c-Jun Standard IFNa 30min ChIP-seq Signal from ENCODE/SYDH 2 186 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 c-Jun Standard IFNa 30min ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFa3 cJun Sd\ subGroups view=Signal factor=CJUN cellType=t1K562 control=STD treatment=IFNa30\ track wgEncodeSydhTfbsK562CjunIfna30StdSig\ type bigWig 1.000000 38075.000000\ wgEncodeOpenChromChipSpleenocCtcfPkRep1 Spleen CTCF Pk narrowPeak Spleen OC CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA 3 186 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Spleen OC CTCF TFBS ChIP-seq Peaks from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewPeaks off\ shortLabel Spleen CTCF Pk\ subGroups view=Peaks factor=CTCF cellType=t3SPLEENOC treatment=AANONE\ track wgEncodeOpenChromChipSpleenocCtcfPkRep1\ type narrowPeak\ wgEncodeHaibMethylRrbsBcstomach0111002BiochainSitesRep1 Stomach_BC 1 bed 9 + Stomach BC 01-11002 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 186 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Stomach BC 01-11002 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Stomach_BC 1\ subGroups cellType=t3STOMACHBC0111002 obtainedBy=BioChain treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBcstomach0111002BiochainSitesRep1\ type bed 9 +\ wgEncodeUwDgfT47dPk T-47D Pk narrowPeak T-47D DNaseI DGF Peaks from ENCODE/UW 0 186 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel T-47D Pk\ subGroups view=Peaks cellType=t3T47D treatment=aNONE rep=rep1\ track wgEncodeUwDgfT47dPk\ type narrowPeak\ wgEncodeBroadHistoneA549H3k27acEtoh02Sig A549 EtOH H3K27ac bigWig 0.040000 734.320007 A549 EtOH 0.02% H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 187 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 EtOH 0.02% H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 EtOH H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k27acEtoh02Sig\ type bigWig 0.040000 734.320007\ wgEncodeCshlLongRnaSeqA549NucleusPapJunctions A549 nuc pA+ J bed 6 + A549 nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 187 0 0 0 127 127 127 0 0 0 expression 1 longLabel A549 nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel A549 nuc pA+ J\ subGroups view=Junctions cellType=t2A549 localization=NUCLEUS rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqA549NucleusPapJunctions\ type bed 6 +\ wgEncodeUwHistoneBe2cH3k04me3StdRawRep2 BE2_C H3K4M3 Sg 2 bigWig 1.000000 23372.000000 BE2_C H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 187 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BE2_C H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel BE2_C H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3BE2C rep=rep2 treatment=zNone\ track wgEncodeUwHistoneBe2cH3k04me3StdRawRep2\ type bigWig 1.000000 23372.000000\ encTfChipPkENCFF030NYG GM12878 SRF 2 narrowPeak Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF030NYG) 1 187 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF030NYG)\ parent encTfChipPk off\ shortLabel GM12878 SRF 2\ subGroups cellType=GM12878 factor=SRF\ track encTfChipPkENCFF030NYG\ wgEncodeHaibTfbsGm12878Zeb1sc25388V0416102PkRep1 GM78 ZEB1 V102 1 broadPeak GM12878 ZEB1 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 187 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ZEB1 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 ZEB1 V102 1\ subGroups view=Peaks factor=ZEB1SC25388 cellType=t1GM12878 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Zeb1sc25388V0416102PkRep1\ type broadPeak\ wgEncodeUwDnaseH7esDiffa9dHotspotsRep1 H7h difPA9 Ht 1 broadPeak H7-hESC diffProtA 9 d DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 187 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC diffProtA 9 d DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel H7h difPA9 Ht 1\ subGroups view=Hot cellType=t3H7HESC treatment=DIFFA9D rep=rep1\ track wgEncodeUwDnaseH7esDiffa9dHotspotsRep1\ type broadPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_ctss_fwd H9MelanocyticInduction_Day01Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_forward 0 187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep2%20%28H9EB-2%20d1%29.CNhs12826.12726-135G8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12726-135G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_tpm_fwd H9MelanocyticInduction_Day01Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_forward 1 187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep2%20%28H9EB-2%20d1%29.CNhs12826.12726-135G8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12726-135G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHacCtcfStdRawRep1 HAc CTCF Sg 1 bigWig 1.000000 8822.000000 HAc CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 187 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HAc CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HAc CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HAC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHacCtcfStdRawRep1\ type bigWig 1.000000 8822.000000\ wgEncodeRikenCageHepg2CellPapPlusSignalRep2 HepG cell pA+ + 2 bigWig 0.040000 50981.449219 HepG2 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 187 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HepG cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t2HEPG2 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHepg2CellPapPlusSignalRep2\ type bigWig 0.040000 50981.449219\ wgEncodeOpenChromDnaseHsmmembPk HSMM emb Pk narrowPeak HSMM emb DNaseI HS Peaks from ENCODE/Duke 3 187 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM emb DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel HSMM emb Pk\ subGroups view=Peaks cellType=t3HSMMEMB treatment=zNONE\ track wgEncodeOpenChromDnaseHsmmembPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqImr90NucleusShorttotalCiptapPlusRep1 IMR9 nucl CIP + 1 bigWig 1.000000 6343795.000000 IMR90 CIP-TAP nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 187 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 CIP-TAP nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 nucl CIP + 1\ subGroups view=PlusSignal cellType=t2IMR90 localization=NUCLEUS protocol=CIPTAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90NucleusShorttotalCiptapPlusRep1\ type bigWig 1.000000 6343795.000000\ wgEncodeAwgTfbsHaibK562Gata2sc267Pcr1xUniPk K562 GATA2 h narrowPeak K562 TFBS Uniform Peaks of GATA2_(SC-267) from ENCODE/HudsonAlpha/Analysis 1 187 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of GATA2_(SC-267) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 GATA2 h\ subGroups tier=a10 cellType=a10K562 factor=GATA2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Gata2sc267Pcr1xUniPk\ wgEncodeSydhTfbsK562CjunIfna6hStdPk K562 IFa6 cJun Sd narrowPeak K562 c-Jun Standard IFNa 6hrs ChIP-seq Peaks from ENCODE/SYDH 3 187 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 c-Jun Standard IFNa 6hrs ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFa6 cJun Sd\ subGroups view=Peaks factor=CJUN cellType=t1K562 control=STD treatment=IFNa6h\ track wgEncodeSydhTfbsK562CjunIfna6hStdPk\ type narrowPeak\ wgEncodeOpenChromChipSpleenocCtcfSigRep1 Spleen CTCF DS bigWig 0.000000 6.415600 Spleen OC CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 187 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Spleen OC CTCF TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Spleen CTCF DS\ subGroups view=SIG factor=CTCF cellType=t3SPLEENOC treatment=AANONE\ track wgEncodeOpenChromChipSpleenocCtcfSigRep1\ type bigWig 0.000000 6.415600\ wgEncodeHaibMethylRrbsBcstomach0111002BiochainSitesRep2 Stomach_BC 2 bed 9 + Stomach BC 01-11002 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 187 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Stomach BC 01-11002 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Stomach_BC 2\ subGroups cellType=t3STOMACHBC0111002 obtainedBy=BioChain treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBcstomach0111002BiochainSitesRep2\ type bed 9 +\ wgEncodeUwDgfT47dSig T-47D Sig bigWig 1.000000 49279.000000 T-47D DNaseI DGF Per-base Signal from ENCODE/UW 2 187 0 0 0 127 127 127 0 0 0 regulation 0 longLabel T-47D DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel T-47D Sig\ subGroups view=Signal cellType=t3T47D treatment=aNONE rep=rep1\ track wgEncodeUwDgfT47dSig\ type bigWig 1.000000 49279.000000\ wgEncodeBroadHistoneA549H3k27me3Dex100nmPk A549 DEX H3K27m3 broadPeak A549 DEX 100 nM H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 188 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 DEX 100 nM H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 DEX H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549H3k27me3Dex100nmPk\ type broadPeak\ wgEncodeCshlLongRnaSeqA549NucleusPapMinusRep3 A549 nuc pA+ - 1 bigWig 1.000000 505459.000000 A549 nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 188 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel A549 nuc pA+ - 1\ subGroups view=MinusSignal cellType=t2A549 localization=NUCLEUS rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqA549NucleusPapMinusRep3\ type bigWig 1.000000 505459.000000\ wgEncodeUwHistoneBe2cInputStdRawRep1 BE2_C In Sg 1 bigWig 1.000000 17997.000000 BE2_C Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 188 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BE2_C Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel BE2_C In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3BE2C rep=rep1 treatment=zNone\ track wgEncodeUwHistoneBe2cInputStdRawRep1\ type bigWig 1.000000 17997.000000\ encTfChipPkENCFF199WGD GM12878 SRF 3 narrowPeak Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF199WGD) 1 188 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF199WGD)\ parent encTfChipPk off\ shortLabel GM12878 SRF 3\ subGroups cellType=GM12878 factor=SRF\ track encTfChipPkENCFF199WGD\ wgEncodeHaibTfbsGm12878Zeb1sc25388V0416102RawRep1 GM78 ZEB1 V102 1 bigWig 0.435075 357.414001 GM12878 ZEB1 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 188 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ZEB1 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 ZEB1 V102 1\ subGroups view=RawSignal factor=ZEB1SC25388 cellType=t1GM12878 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878Zeb1sc25388V0416102RawRep1\ type bigWig 0.435075 357.414001\ wgEncodeUwDnaseH7esHotspotsRep1 H7h Ht 1 broadPeak H7-hESC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 188 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel H7h Ht 1\ subGroups view=Hot cellType=t3H7HESC rep=rep1 treatment=None\ track wgEncodeUwDnaseH7esHotspotsRep1\ type broadPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_ctss_rev H9MelanocyticInduction_Day01Br2- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_reverse 0 188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep2%20%28H9EB-2%20d1%29.CNhs12826.12726-135G8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12726-135G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_tpm_rev H9MelanocyticInduction_Day01Br2- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_reverse 1 188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep2%20%28H9EB-2%20d1%29.CNhs12826.12726-135G8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12726-135G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHacCtcfStdHotspotsRep2 HAc CTCF Ht 2 broadPeak HAc CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 188 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAc CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel HAc CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3HAC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHacCtcfStdHotspotsRep2\ type broadPeak\ wgEncodeRikenCageHepg2CellPapMinusSignalRep1 HepG cell pA+ - 1 bigWig 0.040000 7464.879883 HepG2 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 188 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HepG cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t2HEPG2 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHepg2CellPapMinusSignalRep1\ type bigWig 0.040000 7464.879883\ wgEncodeOpenChromDnaseHsmmembSig HSMM emb DS bigWig 0.000000 1.117100 HSMM emb DNaseI HS Density Signal from ENCODE/Duke 2 188 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM emb DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel HSMM emb DS\ subGroups view=SIG cellType=t3HSMMEMB treatment=zNONE\ track wgEncodeOpenChromDnaseHsmmembSig\ type bigWig 0.000000 1.117100\ wgEncodeCshlShortRnaSeqImr90NucleusShorttotalCiptapPlusRep2 IMR9 nucl CIP + 2 bigWig 1.000000 27572884.000000 IMR90 CIP-TAP nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 188 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 CIP-TAP nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 nucl CIP + 2\ subGroups view=PlusSignal cellType=t2IMR90 localization=NUCLEUS protocol=CIPTAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90NucleusShorttotalCiptapPlusRep2\ type bigWig 1.000000 27572884.000000\ wgEncodeAwgTfbsUchicagoK562Egata2UniPk K562 GATA2 i narrowPeak K562 TFBS Uniform Peaks of eGFP-GATA2 from ENCODE/UChicago/Analysis 1 188 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of eGFP-GATA2 from ENCODE/UChicago/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 GATA2 i\ subGroups tier=a10 cellType=a10K562 factor=GATA2 lab=UChicago\ track wgEncodeAwgTfbsUchicagoK562Egata2UniPk\ wgEncodeSydhTfbsK562CjunIfna6hStdSig K562 IFa6 cJun Sd bigWig 0.000000 10884.000000 K562 c-Jun Standard IFNa 6hrs ChIP-seq Signal from ENCODE/SYDH 2 188 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 c-Jun Standard IFNa 6hrs ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFa6 cJun Sd\ subGroups view=Signal factor=CJUN cellType=t1K562 control=STD treatment=IFNa6h\ track wgEncodeSydhTfbsK562CjunIfna6hStdSig\ type bigWig 0.000000 10884.000000\ wgEncodeOpenChromChipSpleenocCtcfBaseOverlapSignalRep1 Spleen CTCF OS bigWig 0.000000 2636.000000 Spleen OC CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA 2 188 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Spleen OC CTCF TFBS ChIP-seq Overlap Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSigBo off\ shortLabel Spleen CTCF OS\ subGroups view=SIGBO factor=CTCF cellType=t3SPLEENOC treatment=AANONE\ track wgEncodeOpenChromChipSpleenocCtcfBaseOverlapSignalRep1\ type bigWig 0.000000 2636.000000\ wgEncodeHaibMethylRrbsT47dDm002p24hHaibSitesRep1 T-47D DMSO 1 bed 9 + T-47D DMSO 0.02% 24 h Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 188 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D DMSO 0.02% 24 h Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel T-47D DMSO 1\ subGroups cellType=t3T47D obtainedBy=HAIB treatment=DM002P24H rep=rep1\ track wgEncodeHaibMethylRrbsT47dDm002p24hHaibSitesRep1\ type bed 9 +\ wgEncodeUwDgfT47dRaw T-47D Raw bigWig 1.000000 526380.000000 T-47D DNaseI DGF Raw Signal from ENCODE/UW 0 188 0 0 0 127 127 127 0 0 0 regulation 0 longLabel T-47D DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel T-47D Raw\ subGroups view=zRaw cellType=t3T47D treatment=aNONE rep=rep1\ track wgEncodeUwDgfT47dRaw\ type bigWig 1.000000 526380.000000\ wgEncodeBroadHistoneA549H3k27me3Dex100nmSig A549 DEX H3K27m3 bigWig 0.040000 648.280029 A549 DEX 100 nM H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 189 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 DEX 100 nM H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 DEX H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549H3k27me3Dex100nmSig\ type bigWig 0.040000 648.280029\ wgEncodeCshlLongRnaSeqA549NucleusPapMinusRep4 A549 nuc pA+ - 2 bigWig 1.000000 212255.000000 A549 nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 189 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel A549 nuc pA+ - 2\ subGroups view=MinusSignal cellType=t2A549 localization=NUCLEUS rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqA549NucleusPapMinusRep4\ type bigWig 1.000000 212255.000000\ wgEncodeUwHistoneBjH3k4me3StdHotspotsRep1 BJ H3K4M3 Ht 1 broadPeak BJ H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 189 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel BJ H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3BJ rep=rep1 treatment=zNone\ track wgEncodeUwHistoneBjH3k4me3StdHotspotsRep1\ type broadPeak\ encTfChipPkENCFF817QHW GM12878 STAT1 narrowPeak Transcription Factor ChIP-seq Peaks of STAT1 in GM12878 from ENCODE 3 (ENCFF817QHW) 1 189 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of STAT1 in GM12878 from ENCODE 3 (ENCFF817QHW)\ parent encTfChipPk off\ shortLabel GM12878 STAT1\ subGroups cellType=GM12878 factor=STAT1\ track encTfChipPkENCFF817QHW\ wgEncodeHaibTfbsGm12878Zeb1sc25388V0416102PkRep2 GM78 ZEB1 V102 2 broadPeak GM12878 ZEB1 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 189 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel GM12878 ZEB1 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM78 ZEB1 V102 2\ subGroups view=Peaks factor=ZEB1SC25388 cellType=t1GM12878 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Zeb1sc25388V0416102PkRep2\ type broadPeak\ wgEncodeUwDnaseH7esDiffa14dPkRep1 H7h difPA14 Pk 1 narrowPeak H7-hESC diffProtA 14 d DNaseI HS Peaks Rep 1 from ENCODE/UW 1 189 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC diffProtA 14 d DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel H7h difPA14 Pk 1\ subGroups view=Peaks cellType=t3H7HESC treatment=DIFFA14D rep=rep1\ track wgEncodeUwDnaseH7esDiffa14dPkRep1\ type narrowPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_ctss_fwd H9MelanocyticInduction_Day01Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_forward 0 189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep3%20%28H9EB-3%20d1%29.CNhs12909.12824-136I7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12824-136I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_tpm_fwd H9MelanocyticInduction_Day01Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_forward 1 189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep3%20%28H9EB-3%20d1%29.CNhs12909.12824-136I7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12824-136I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHacCtcfStdPkRep2 HAc CTCF Pk 2 narrowPeak HAc CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 189 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAc CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HAc CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3HAC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHacCtcfStdPkRep2\ type narrowPeak\ wgEncodeRikenCageHepg2CellPapMinusSignalRep2 HepG cell pA+ - 2 bigWig 0.040000 9120.190430 HepG2 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 189 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HepG cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t2HEPG2 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHepg2CellPapMinusSignalRep2\ type bigWig 0.040000 9120.190430\ wgEncodeOpenChromDnaseHsmmembBaseOverlapSignal HSMM emb OS bigWig 0.000000 198.000000 HSMM emb DNaseI HS Overlap Signal from ENCODE/Duke 2 189 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM emb DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel HSMM emb OS\ subGroups view=SIGBO cellType=t3HSMMEMB treatment=zNONE\ track wgEncodeOpenChromDnaseHsmmembBaseOverlapSignal\ type bigWig 0.000000 198.000000\ wgEncodeCshlShortRnaSeqImr90NucleusContigs IMR9 nucl C bed 6 IMR90 nucleus small RNA-seq Contigs from ENCODE/CSHL 2 189 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel IMR9 nucl C\ subGroups view=Contigs rep=Pooled cellType=t2IMR90 localization=NUCLEUS protocol=NONE rank=none\ track wgEncodeCshlShortRnaSeqImr90NucleusContigs\ type bed 6\ wgEncodeAwgTfbsSydhK562Gata2UcdUniPk K562 GATA2 c narrowPeak K562 TFBS Uniform Peaks of GATA-2 from ENCODE/USC/Analysis 1 189 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of GATA-2 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 GATA2 c\ subGroups tier=a10 cellType=a10K562 factor=GATA2 lab=USC\ track wgEncodeAwgTfbsSydhK562Gata2UcdUniPk\ wgEncodeSydhTfbsK562CjunIfng30StdPk K562 IFg3 cJun Sd narrowPeak K562 c-Jun Standard IFNg 30min ChIP-seq Peaks from ENCODE/SYDH 3 189 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 c-Jun Standard IFNg 30min ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFg3 cJun Sd\ subGroups view=Peaks factor=CJUN cellType=t1K562 control=STD treatment=IFNg30\ track wgEncodeSydhTfbsK562CjunIfng30StdPk\ type narrowPeak\ wgEncodeOpenChromChipSpleenocInputSig Spleen Input DS bigWig 0.000000 4.871900 Spleen OC Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA 2 189 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Spleen OC Input TFBS ChIP-seq Density Signal from ENCODE/OpenChrom-UTA\ parent wgEncodeOpenChromChipViewSignal off\ shortLabel Spleen Input DS\ subGroups view=SIG factor=zCTRL cellType=t3SPLEENOC treatment=AANONE\ track wgEncodeOpenChromChipSpleenocInputSig\ type bigWig 0.000000 4.871900\ wgEncodeHaibMethylRrbsT47dEstradia24hhHaibSitesRep1 T-47D Estra 1 bed 9 + T-47D Estradiol Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 189 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D Estradiol Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel T-47D Estra 1\ subGroups cellType=t3T47D obtainedBy=HAIB treatment=EST10NM24H rep=rep1\ track wgEncodeHaibMethylRrbsT47dEstradia24hhHaibSitesRep1\ type bed 9 +\ wgEncodeUwDgfTh1Hotspots Th1 Hot 1 broadPeak Th1 DNaseI DGF Hotspots Rep 1 from ENCODE/UW 0 189 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th1 DNaseI DGF Hotspots Rep 1 from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel Th1 Hot 1\ subGroups view=Hotspots cellType=t3TH01 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh1Hotspots\ type broadPeak\ wgEncodeBroadHistoneA549H3k27me3Etoh02Pk A549 EtOH H3K27m3 broadPeak A549 EtOH 0.02% H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 190 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 EtOH 0.02% H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 EtOH H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k27me3Etoh02Pk\ type broadPeak\ wgEncodeCshlLongRnaSeqA549NucleusPapPlusRep3 A549 nuc pA+ + 1 bigWig 1.000000 591420.000000 A549 nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 190 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel A549 nuc pA+ + 1\ subGroups view=PlusSignal cellType=t2A549 localization=NUCLEUS rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqA549NucleusPapPlusRep3\ type bigWig 1.000000 591420.000000\ wgEncodeUwHistoneBjH3k4me3StdPkRep1 BJ H3K4M3 Pk 1 narrowPeak BJ H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 190 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel BJ H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3BJ rep=rep1 treatment=zNone\ track wgEncodeUwHistoneBjH3k4me3StdPkRep1\ type narrowPeak\ encTfChipPkENCFF014RBU GM12878 STAT3 narrowPeak Transcription Factor ChIP-seq Peaks of STAT3 in GM12878 from ENCODE 3 (ENCFF014RBU) 1 190 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of STAT3 in GM12878 from ENCODE 3 (ENCFF014RBU)\ parent encTfChipPk off\ shortLabel GM12878 STAT3\ subGroups cellType=GM12878 factor=STAT3\ track encTfChipPkENCFF014RBU\ wgEncodeHaibTfbsGm12878Zeb1sc25388V0416102RawRep2 GM78 ZEB1 V102 2 bigWig 0.242199 131.514008 GM12878 ZEB1 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 190 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 ZEB1 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 ZEB1 V102 2\ subGroups view=RawSignal factor=ZEB1SC25388 cellType=t1GM12878 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878Zeb1sc25388V0416102RawRep2\ type bigWig 0.242199 131.514008\ wgEncodeUwDnaseH7esDiffa2dPkRep1 H7h difPA2 Pk 1 narrowPeak H7-hESC diffProtA 2 d DNaseI HS Peaks Rep 1 from ENCODE/UW 1 190 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC diffProtA 2 d DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel H7h difPA2 Pk 1\ subGroups view=Peaks cellType=t3H7HESC treatment=DIFFA2D rep=rep1\ track wgEncodeUwDnaseH7esDiffa2dPkRep1\ type narrowPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_ctss_rev H9MelanocyticInduction_Day01Br3- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_reverse 0 190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep3%20%28H9EB-3%20d1%29.CNhs12909.12824-136I7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12824-136I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_tpm_rev H9MelanocyticInduction_Day01Br3- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_reverse 1 190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep3%20%28H9EB-3%20d1%29.CNhs12909.12824-136I7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12824-136I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHacCtcfStdRawRep2 HAc CTCF Sg 2 bigWig 1.000000 12920.000000 HAc CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 190 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HAc CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HAc CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3HAC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHacCtcfStdRawRep2\ type bigWig 1.000000 12920.000000\ wgEncodeRikenCageHepg2CellPapAlnRep1 HepG cell pA+ A 1 bam HepG2 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 190 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HepG cell pA+ A 1\ subGroups view=Alignments cellType=t2HEPG2 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHepg2CellPapAlnRep1\ type bam\ wgEncodeOpenChromDnaseHsmmfshdPk HSMM FSHD Pk narrowPeak HSMM FSHD DNaseI HS Peaks from ENCODE/Duke 3 190 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM FSHD DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel HSMM FSHD Pk\ subGroups view=Peaks cellType=t3HSMMFSHD treatment=zNONE\ track wgEncodeOpenChromDnaseHsmmfshdPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqImr90NucleusShorttotalMinusRep1 IMR9 nucl - 1 bigWig 1.000000 4873298.000000 IMR90 nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 190 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 nucl - 1\ subGroups view=MinusSignal cellType=t2IMR90 localization=NUCLEUS protocol=NONE rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90NucleusShorttotalMinusRep1\ type bigWig 1.000000 4873298.000000\ wgEncodeAwgTfbsSydhK562Gtf2bUniPk K562 GTF2B narrowPeak K562 TFBS Uniform Peaks of GTF2B from ENCODE/Harvard/Analysis 1 190 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of GTF2B from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 GTF2B\ subGroups tier=a10 cellType=a10K562 factor=GTF2B lab=Harvard\ track wgEncodeAwgTfbsSydhK562Gtf2bUniPk\ wgEncodeSydhTfbsK562CjunIfng30StdSig K562 IFg3 cJun Sd bigWig 0.000000 13385.200195 K562 c-Jun Standard IFNg 30min ChIP-seq Signal from ENCODE/SYDH 2 190 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 c-Jun Standard IFNg 30min ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFg3 cJun Sd\ subGroups view=Signal factor=CJUN cellType=t1K562 control=STD treatment=IFNg30\ track wgEncodeSydhTfbsK562CjunIfng30StdSig\ type bigWig 0.000000 13385.200195\ wgEncodeHaibMethylRrbsT47dDm002p24hHaibSitesRep2 T-47D DMSO 2 bed 9 + T-47D DMSO 0.02% 24 h Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 190 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D DMSO 0.02% 24 h Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel T-47D DMSO 2\ subGroups cellType=t3T47D obtainedBy=HAIB treatment=DM002P24H rep=rep2\ track wgEncodeHaibMethylRrbsT47dDm002p24hHaibSitesRep2\ type bed 9 +\ wgEncodeUwDgfTh1HotspotsRep2 Th1 Hot 2 broadPeak Th1 DNaseI DGF Hotspots Rep 2 from ENCODE/UW 0 190 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th1 DNaseI DGF Hotspots Rep 2 from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel Th1 Hot 2\ subGroups view=Hotspots cellType=t3TH01 treatment=aNONE rep=rep2\ track wgEncodeUwDgfTh1HotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneA549H3k27me3Etoh02Sig A549 EtOH H3K27m3 bigWig 0.040000 724.080017 A549 EtOH 0.02% H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 191 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 EtOH 0.02% H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 EtOH H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k27me3Etoh02Sig\ type bigWig 0.040000 724.080017\ wgEncodeCshlLongRnaSeqA549NucleusPapPlusRep4 A549 nuc pA+ + 2 bigWig 1.000000 181472.000000 A549 nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 191 0 0 0 127 127 127 0 0 0 expression 0 longLabel A549 nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel A549 nuc pA+ + 2\ subGroups view=PlusSignal cellType=t2A549 localization=NUCLEUS rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqA549NucleusPapPlusRep4\ type bigWig 1.000000 181472.000000\ wgEncodeUwHistoneBjH3k4me3StdRawRep1 BJ H3K4M3 Sg 1 bigWig 1.000000 2259.000000 BJ H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 191 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel BJ H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3BJ rep=rep1 treatment=zNone\ track wgEncodeUwHistoneBjH3k4me3StdRawRep1\ type bigWig 1.000000 2259.000000\ encTfChipPkENCFF492YMU GM12878 STAT5A narrowPeak Transcription Factor ChIP-seq Peaks of STAT5A in GM12878 from ENCODE 3 (ENCFF492YMU) 1 191 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of STAT5A in GM12878 from ENCODE 3 (ENCFF492YMU)\ parent encTfChipPk off\ shortLabel GM12878 STAT5A\ subGroups cellType=GM12878 factor=STAT5A\ track encTfChipPkENCFF492YMU\ wgEncodeHaibTfbsGm12878RxlchPcr1xRawRep1 GM78 RvXL PCR1 1 bigWig 0.074945 141.964996 GM12878 Control PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 191 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Control PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RvXL PCR1 1\ subGroups view=RawSignal factor=zRXLCH cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878RxlchPcr1xRawRep1\ type bigWig 0.074945 141.964996\ wgEncodeUwDnaseH7esDiffa5dPkRep1 H7h difPA5 Pk 1 narrowPeak H7-hESC diffProtA 5 d DNaseI HS Peaks Rep 1 from ENCODE/UW 1 191 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC diffProtA 5 d DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel H7h difPA5 Pk 1\ subGroups view=Peaks cellType=t3H7HESC treatment=DIFFA5D rep=rep1\ track wgEncodeUwDnaseH7esDiffa5dPkRep1\ type narrowPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_ctss_fwd H9MelanocyticInduction_Day03Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_forward 0 191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep1%20%28H9EB-1%20d3%29.CNhs12895.12629-134F1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12629-134F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_tpm_fwd H9MelanocyticInduction_Day03Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_forward 1 191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep1%20%28H9EB-1%20d3%29.CNhs12895.12629-134F1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12629-134F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHacInputStdRawRep1 HAc In Sg 1 bigWig 1.000000 18298.000000 HAc Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 191 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HAc Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HAc In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HAC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHacInputStdRawRep1\ type bigWig 1.000000 18298.000000\ wgEncodeRikenCageHepg2CellPapAlnRep2 HepG cell pA+ A 2 bam HepG2 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 191 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HepG cell pA+ A 2\ subGroups view=Alignments cellType=t2HEPG2 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHepg2CellPapAlnRep2\ type bam\ wgEncodeOpenChromDnaseHsmmfshdSig HSMM FSHD DS bigWig 0.000000 1.203700 HSMM FSHD DNaseI HS Density Signal from ENCODE/Duke 2 191 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM FSHD DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel HSMM FSHD DS\ subGroups view=SIG cellType=t3HSMMFSHD treatment=zNONE\ track wgEncodeOpenChromDnaseHsmmfshdSig\ type bigWig 0.000000 1.203700\ wgEncodeCshlShortRnaSeqImr90NucleusShorttotalMinusRep2 IMR9 nucl - 2 bigWig 1.000000 24131304.000000 IMR90 nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 191 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 nucl - 2\ subGroups view=MinusSignal cellType=t2IMR90 localization=NUCLEUS protocol=NONE rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90NucleusShorttotalMinusRep2\ type bigWig 1.000000 24131304.000000\ wgEncodeAwgTfbsSydhK562Gtf2f1ab28179IggrabUniPk K562 GTF2F1 narrowPeak K562 TFBS Uniform Peaks of GTF2F1_(AB28179) from ENCODE/Stanford/Analysis 1 191 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of GTF2F1_(AB28179) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 GTF2F1\ subGroups tier=a10 cellType=a10K562 factor=GTF2F1 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Gtf2f1ab28179IggrabUniPk\ wgEncodeSydhTfbsK562CjunIfng6hStdPk K562 IFg6 cJun Sd narrowPeak K562 c-Jun Standard IFNg 6hrs ChIP-seq Peaks from ENCODE/SYDH 3 191 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 c-Jun Standard IFNg 6hrs ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFg6 cJun Sd\ subGroups view=Peaks factor=CJUN cellType=t1K562 control=STD treatment=IFNg6h\ track wgEncodeSydhTfbsK562CjunIfng6hStdPk\ type narrowPeak\ wgEncodeHaibMethylRrbsT47dEstradia24hhHaibSitesRep2 T-47D Estra 2 bed 9 + T-47D Estradiol Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 191 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D Estradiol Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel T-47D Estra 2\ subGroups cellType=t3T47D obtainedBy=HAIB treatment=EST10NM24H rep=rep2\ track wgEncodeHaibMethylRrbsT47dEstradia24hhHaibSitesRep2\ type bed 9 +\ wgEncodeUwDgfTh1Pk Th1 Pk 1 narrowPeak Th1 DNaseI DGF Peaks Rep 1 from ENCODE/UW 0 191 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th1 DNaseI DGF Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel Th1 Pk 1\ subGroups view=Peaks cellType=t3TH01 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh1Pk\ type narrowPeak\ wgEncodeBroadHistoneA549H3k36me3Dex100nmPk A549 DEX H3K36m3 broadPeak A549 DEX 100 nM H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 192 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 DEX 100 nM H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 DEX H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549H3k36me3Dex100nmPk\ type broadPeak\ wgEncodeUwHistoneBjH3k4me3StdHotspotsRep2 BJ H3K4M3 Ht 2 broadPeak BJ H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 192 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel BJ H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3BJ rep=rep2 treatment=zNone\ track wgEncodeUwHistoneBjH3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqCd20CellPamAlnRep1 CD20 cel pA- A 1 bam CD20+ whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 192 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD20+ whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel CD20 cel pA- A 1\ subGroups view=Alignments cellType=t2BCELLSCD20 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqCd20CellPamAlnRep1\ type bam\ encTfChipPkENCFF746JPU GM12878 SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in GM12878 from ENCODE 3 (ENCFF746JPU) 1 192 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in GM12878 from ENCODE 3 (ENCFF746JPU)\ parent encTfChipPk off\ shortLabel GM12878 SUZ12\ subGroups cellType=GM12878 factor=SUZ12\ track encTfChipPkENCFF746JPU\ wgEncodeHaibTfbsGm12878RxlchPcr1xRawRep2 GM78 RvXL PCR1 2 bigWig 0.091415 152.707993 GM12878 Control PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 192 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Control PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RvXL PCR1 2\ subGroups view=RawSignal factor=zRXLCH cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878RxlchPcr1xRawRep2\ type bigWig 0.091415 152.707993\ wgEncodeUwDnaseH7esDiffa9dPkRep1 H7h difPA9 Pk 1 narrowPeak H7-hESC diffProtA 9 d DNaseI HS Peaks Rep 1 from ENCODE/UW 1 192 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC diffProtA 9 d DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel H7h difPA9 Pk 1\ subGroups view=Peaks cellType=t3H7HESC treatment=DIFFA9D rep=rep1\ track wgEncodeUwDnaseH7esDiffa9dPkRep1\ type narrowPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_ctss_rev H9MelanocyticInduction_Day03Br1- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_reverse 0 192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep1%20%28H9EB-1%20d3%29.CNhs12895.12629-134F1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12629-134F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_tpm_rev H9MelanocyticInduction_Day03Br1- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_reverse 1 192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep1%20%28H9EB-1%20d3%29.CNhs12895.12629-134F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12629-134F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHaspCtcfStdHotspotsRep1 HAsp CTCF Ht 1 broadPeak HA-sp CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 192 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-sp CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HAsp CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HASP rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHaspCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeOpenChromDnaseHsmmfshdBaseOverlapSignal HSMM FSHD OS bigWig 0.000000 308.000000 HSMM FSHD DNaseI HS Overlap Signal from ENCODE/Duke 2 192 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM FSHD DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel HSMM FSHD OS\ subGroups view=SIGBO cellType=t3HSMMFSHD treatment=zNONE\ track wgEncodeOpenChromDnaseHsmmfshdBaseOverlapSignal\ type bigWig 0.000000 308.000000\ wgEncodeRikenCageHuvecCytosolPamTssHmmV2 HUVE cyto pA- bed 6 HUVEC cytosol polyA- CAGE TSS HMM from ENCODE/RIKEN 3 192 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC cytosol polyA- CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HUVE cyto pA-\ subGroups view=TssHmm cellType=t2HUVEC localization=cytosol rnaExtract=pAM rep=rep0 rank=rankP\ track wgEncodeRikenCageHuvecCytosolPamTssHmmV2\ type bed 6\ wgEncodeCshlShortRnaSeqImr90NucleusShorttotalPlusRep1 IMR9 nucl + 1 bigWig 1.000000 4735303.000000 IMR90 nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 192 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 nucl + 1\ subGroups view=PlusSignal cellType=t2IMR90 localization=NUCLEUS protocol=NONE rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90NucleusShorttotalPlusRep1\ type bigWig 1.000000 4735303.000000\ wgEncodeAwgTfbsSydhK562Tf3c110UniPk K562 GTF3C2 narrowPeak K562 TFBS Uniform Peaks of TFIIIC-110 from ENCODE/Harvard/Analysis 1 192 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of TFIIIC-110 from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 GTF3C2\ subGroups tier=a10 cellType=a10K562 factor=GTF3C2 lab=Harvard\ track wgEncodeAwgTfbsSydhK562Tf3c110UniPk\ wgEncodeSydhTfbsK562CjunIfng6hStdSig K562 IFg6 cJun Sd bigWig 0.000000 12763.799805 K562 c-Jun Standard IFNg 6hrs ChIP-seq Signal from ENCODE/SYDH 2 192 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 c-Jun Standard IFNg 6hrs ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFg6 cJun Sd\ subGroups view=Signal factor=CJUN cellType=t1K562 control=STD treatment=IFNg6h\ track wgEncodeSydhTfbsK562CjunIfng6hStdSig\ type bigWig 0.000000 12763.799805\ wgEncodeHaibMethylRrbsBctestisn30BiochainSitesRep1 Testis_BC 1 bed 9 + Testis BC N30 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 192 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Testis BC N30 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Testis_BC 1\ subGroups cellType=t3TESTISBCN30 obtainedBy=BioChain treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBctestisn30BiochainSitesRep1\ type bed 9 +\ wgEncodeUwDgfTh1PkRep2 Th1 Pk 2 narrowPeak Th1 DNaseI DGF Peaks Rep 2 from ENCODE/UW 0 192 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th1 DNaseI DGF Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel Th1 Pk 2\ subGroups view=Peaks cellType=t3TH01 treatment=aNONE rep=rep2\ track wgEncodeUwDgfTh1PkRep2\ type narrowPeak\ wgEncodeBroadHistoneA549H3k36me3Dex100nmSig A549 DEX H3K36m3 bigWig 0.040000 752.440002 A549 DEX 100 nM H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 193 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 DEX 100 nM H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 DEX H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549H3k36me3Dex100nmSig\ type bigWig 0.040000 752.440002\ wgEncodeUwHistoneBjH3k4me3StdPkRep2 BJ H3K4M3 Pk 2 narrowPeak BJ H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 193 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel BJ H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3BJ rep=rep2 treatment=zNone\ track wgEncodeUwHistoneBjH3k4me3StdPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqCd20CellPamAlnRep2 CD20 cel pA- A 2 bam CD20+ whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 193 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD20+ whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel CD20 cel pA- A 2\ subGroups view=Alignments cellType=t2BCELLSCD20 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqCd20CellPamAlnRep2\ type bam\ encTfChipPkENCFF544NRC GM12878 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in GM12878 from ENCODE 3 (ENCFF544NRC) 1 193 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of TAF1 in GM12878 from ENCODE 3 (ENCFF544NRC)\ parent encTfChipPk on\ shortLabel GM12878 TAF1\ subGroups cellType=GM12878 factor=TAF1\ track encTfChipPkENCFF544NRC\ wgEncodeHaibTfbsGm12878RxlchPcr1xRawRep3 GM78 RvXL PCR1 3 bigWig 0.182357 147.481995 GM12878 Control PCR1x ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB 2 193 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Control PCR1x ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RvXL PCR1 3\ subGroups view=RawSignal factor=zRXLCH cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep3\ track wgEncodeHaibTfbsGm12878RxlchPcr1xRawRep3\ type bigWig 0.182357 147.481995\ wgEncodeUwDnaseH7esPkRep1V2 H7h Pk 1 narrowPeak H7-hESC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 193 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel H7h Pk 1\ subGroups view=Peaks cellType=t3H7HESC rep=rep1 treatment=None\ track wgEncodeUwDnaseH7esPkRep1V2\ type narrowPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_ctss_fwd H9MelanocyticInduction_Day03Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_forward 0 193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep2%20%28H9EB-2%20d3%29.CNhs12827.12727-135G9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12727-135G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_tpm_fwd H9MelanocyticInduction_Day03Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_forward 1 193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep2%20%28H9EB-2%20d3%29.CNhs12827.12727-135G9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12727-135G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHaspCtcfStdPkRep1 HAsp CTCF Pk 1 narrowPeak HA-sp CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 193 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-sp CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HAsp CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HASP rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHaspCtcfStdPkRep1\ type narrowPeak\ wgEncodeOpenChromDnaseHsmmtPk HSMMtube Pk narrowPeak HSMMtube DNaseI HS Peaks from ENCODE/Duke 3 193 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMMtube DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel HSMMtube Pk\ subGroups view=Peaks cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeOpenChromDnaseHsmmtPk\ type narrowPeak\ wgEncodeRikenCageHuvecCytosolPamPlusSignal HUVE cyto pA- + 1 bigWig 0.040000 4464.319824 HUVEC cytosol polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 193 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC cytosol polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HUVE cyto pA- + 1\ subGroups view=PlusRawSignal cellType=t2HUVEC localization=cytosol rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageHuvecCytosolPamPlusSignal\ type bigWig 0.040000 4464.319824\ wgEncodeCshlShortRnaSeqImr90NucleusShorttotalPlusRep2 IMR9 nucl + 2 bigWig 1.000000 24104172.000000 IMR90 nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 193 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 nucl + 2\ subGroups view=PlusSignal cellType=t2IMR90 localization=NUCLEUS protocol=NONE rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90NucleusShorttotalPlusRep2\ type bigWig 1.000000 24104172.000000\ wgEncodeSydhTfbsK562CjunStdPk K562 cJun Std narrowPeak K562 c-Jun Standard ChIP-seq Peaks from ENCODE/SYDH 3 193 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 c-Jun Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 cJun Std\ subGroups view=Peaks factor=CJUN cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562CjunStdPk\ type narrowPeak\ wgEncodeAwgTfbsBroadK562Hdac1sc6298UniPk K562 HDAC1 narrowPeak K562 TFBS Uniform Peaks of HDAC1_(SC-6298) from ENCODE/Broad/Analysis 1 193 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of HDAC1_(SC-6298) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 HDAC1\ subGroups tier=a10 cellType=a10K562 factor=HDAC1 lab=Broad\ track wgEncodeAwgTfbsBroadK562Hdac1sc6298UniPk\ wgEncodeHaibMethylRrbsBctestisn30BiochainSitesRep2 Testis_BC 2 bed 9 + Testis BC N30 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 193 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Testis BC N30 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Testis_BC 2\ subGroups cellType=t3TESTISBCN30 obtainedBy=BioChain treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBctestisn30BiochainSitesRep2\ type bed 9 +\ wgEncodeUwDgfTh1Sig Th1 Sig 1 bigWig 1.000000 15550.000000 Th1 DNaseI DGF Per-base Signal Rep 1 from ENCODE/UW 2 193 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th1 DNaseI DGF Per-base Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel Th1 Sig 1\ subGroups view=Signal cellType=t3TH01 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh1Sig\ type bigWig 1.000000 15550.000000\ wgEncodeBroadHistoneA549H3k36me3Etoh02Pk A549 EtOH H3K36m3 broadPeak A549 EtOH 0.02% H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 194 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 EtOH 0.02% H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 EtOH H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k36me3Etoh02Pk\ type broadPeak\ wgEncodeUwHistoneBjH3k4me3StdRawRep2 BJ H3K4M3 Sg 2 bigWig 1.000000 2701.000000 BJ H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 194 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel BJ H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3BJ rep=rep2 treatment=zNone\ track wgEncodeUwHistoneBjH3k4me3StdRawRep2\ type bigWig 1.000000 2701.000000\ wgEncodeCshlLongRnaSeqCd20CellPamContigs CD20 cel pA- C bed 6 + CD20+ whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 194 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD20+ whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel CD20 cel pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2BCELLSCD20 localization=CELL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqCd20CellPamContigs\ type bed 6 +\ encTfChipPkENCFF957YRU GM12878 TBL1XR1 narrowPeak Transcription Factor ChIP-seq Peaks of TBL1XR1 in GM12878 from ENCODE 3 (ENCFF957YRU) 1 194 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of TBL1XR1 in GM12878 from ENCODE 3 (ENCFF957YRU)\ parent encTfChipPk off\ shortLabel GM12878 TBL1XR1\ subGroups cellType=GM12878 factor=TBL1XR1\ track encTfChipPkENCFF957YRU\ wgEncodeHaibTfbsGm12878RxlchPcr1xRawRep4 GM78 RvXL PCR1 4 bigWig 0.275165 78.490799 GM12878 Control PCR1x ChIP-seq Raw Signal Rep 4 from ENCODE/HAIB 2 194 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Control PCR1x ChIP-seq Raw Signal Rep 4 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RvXL PCR1 4\ subGroups view=RawSignal factor=zRXLCH cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep4\ track wgEncodeHaibTfbsGm12878RxlchPcr1xRawRep4\ type bigWig 0.275165 78.490799\ wgEncodeUwDnaseH7esDiffa14dRawRep1 H7h difPA14 Sg 1 bigWig 1.000000 37917.000000 H7-hESC diffProtA 14 d DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 194 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC diffProtA 14 d DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel H7h difPA14 Sg 1\ subGroups view=zRSig cellType=t3H7HESC treatment=DIFFA14D rep=rep1\ track wgEncodeUwDnaseH7esDiffa14dRawRep1\ type bigWig 1.000000 37917.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_ctss_rev H9MelanocyticInduction_Day03Br2- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_reverse 0 194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep2%20%28H9EB-2%20d3%29.CNhs12827.12727-135G9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12727-135G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_tpm_rev H9MelanocyticInduction_Day03Br2- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_reverse 1 194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep2%20%28H9EB-2%20d3%29.CNhs12827.12727-135G9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12727-135G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHaspCtcfStdRawRep1 HAsp CTCF Sg 1 bigWig 1.000000 8186.000000 HA-sp CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 194 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HA-sp CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HAsp CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HASP rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHaspCtcfStdRawRep1\ type bigWig 1.000000 8186.000000\ wgEncodeOpenChromDnaseHsmmtSig HSMMtube DS bigWig 0.000000 1.594200 HSMMtube DNaseI HS Density Signal from ENCODE/Duke 2 194 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMMtube DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel HSMMtube DS\ subGroups view=SIG cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeOpenChromDnaseHsmmtSig\ type bigWig 0.000000 1.594200\ wgEncodeRikenCageHuvecCytosolPamMinusSignal HUVE cyto pA- - 1 bigWig 0.040000 4464.319824 HUVEC cytosol polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 194 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC cytosol polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HUVE cyto pA- - 1\ subGroups view=MinusRawSignal cellType=t2HUVEC localization=cytosol rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageHuvecCytosolPamMinusSignal\ type bigWig 0.040000 4464.319824\ wgEncodeCshlShortRnaSeqImr90NucleusTapContigs IMR9 nucl TAP C bed 6 IMR90 TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL 2 194 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel IMR9 nucl TAP C\ subGroups view=Contigs rep=Pooled cellType=t2IMR90 localization=NUCLEUS protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqImr90NucleusTapContigs\ type bed 6\ wgEncodeSydhTfbsK562CjunStdSig K562 cJun Std bigWig 0.000000 13478.500000 K562 c-Jun Standard ChIP-seq Signal from ENCODE/SYDH 2 194 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 c-Jun Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 cJun Std\ subGroups view=Signal factor=CJUN cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562CjunStdSig\ type bigWig 0.000000 13478.500000\ wgEncodeAwgTfbsBroadK562Hdac2a300705aUniPk K562 HDAC2 b narrowPeak K562 TFBS Uniform Peaks of HDAC2_(A300-705A) from ENCODE/Broad/Analysis 1 194 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of HDAC2_(A300-705A) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 HDAC2 b\ subGroups tier=a10 cellType=a10K562 factor=HDAC2 lab=Broad\ track wgEncodeAwgTfbsBroadK562Hdac2a300705aUniPk\ wgEncodeUwDgfTh1SigRep2 Th1 Sig 2 bigWig 1.000000 13082.000000 Th1 DNaseI DGF Per-base Signal Rep 2 from ENCODE/UW 2 194 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th1 DNaseI DGF Per-base Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel Th1 Sig 2\ subGroups view=Signal cellType=t3TH01 treatment=aNONE rep=rep2\ track wgEncodeUwDgfTh1SigRep2\ type bigWig 1.000000 13082.000000\ wgEncodeHaibMethylRrbsU87HaibSitesRep1 U87 1 bed 9 + U87 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 194 0 0 0 127 127 127 0 0 0 regulation 1 longLabel U87 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel U87 1\ subGroups cellType=t3U87 obtainedBy=HAIB treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsU87HaibSitesRep1\ type bed 9 +\ wgEncodeBroadHistoneA549H3k36me3Etoh02Sig A549 EtOH H3K36m3 bigWig 0.040000 744.280029 A549 EtOH 0.02% H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 195 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 EtOH 0.02% H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 EtOH H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k36me3Etoh02Sig\ type bigWig 0.040000 744.280029\ wgEncodeUwHistoneBjH3k27me3StdHotspotsRep1 BJ H3K27M3 Ht 1 broadPeak BJ H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 195 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel BJ H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t3BJ rep=rep1 treatment=zNone\ track wgEncodeUwHistoneBjH3k27me3StdHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqCd20CellPamJunctions CD20 cel pA- J bed 6 + CD20+ whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 195 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD20+ whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel CD20 cel pA- J\ subGroups view=Junctions cellType=t2BCELLSCD20 localization=CELL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqCd20CellPamJunctions\ type bed 6 +\ encTfChipPkENCFF490VYC GM12878 TBP narrowPeak Transcription Factor ChIP-seq Peaks of TBP in GM12878 from ENCODE 3 (ENCFF490VYC) 1 195 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of TBP in GM12878 from ENCODE 3 (ENCFF490VYC)\ parent encTfChipPk off\ shortLabel GM12878 TBP\ subGroups cellType=GM12878 factor=TBP\ track encTfChipPkENCFF490VYC\ wgEncodeHaibTfbsGm12878RxlchPcr1xRawRep5 GM78 RvXL PCR1 5 bigWig 0.201412 94.764297 GM12878 Control PCR1x ChIP-seq Raw Signal Rep 5 from ENCODE/HAIB 2 195 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Control PCR1x ChIP-seq Raw Signal Rep 5 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RvXL PCR1 5\ subGroups view=RawSignal factor=zRXLCH cellType=t1GM12878 protocol=PCR1X treatment=NONE rep=rep5\ track wgEncodeHaibTfbsGm12878RxlchPcr1xRawRep5\ type bigWig 0.201412 94.764297\ wgEncodeUwDnaseH7esDiffa2dRawRep1 H7h difPA2 Sg 1 bigWig 1.000000 12124.000000 H7-hESC diffProtA 2 d DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 195 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC diffProtA 2 d DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel H7h difPA2 Sg 1\ subGroups view=zRSig cellType=t3H7HESC treatment=DIFFA2D rep=rep1\ track wgEncodeUwDnaseH7esDiffa2dRawRep1\ type bigWig 1.000000 12124.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_ctss_fwd H9MelanocyticInduction_Day03Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_forward 0 195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep3%20%28H9EB-3%20d3%29.CNhs12910.12825-136I8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12825-136I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_tpm_fwd H9MelanocyticInduction_Day03Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_forward 1 195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep3%20%28H9EB-3%20d3%29.CNhs12910.12825-136I8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12825-136I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHaspCtcfStdHotspotsRep2 HAsp CTCF Ht 2 broadPeak HA-sp CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 195 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-sp CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel HAsp CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3HASP rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHaspCtcfStdHotspotsRep2\ type broadPeak\ wgEncodeOpenChromDnaseHsmmtBaseOverlapSignal HSMMtube OS bigWig 0.000000 328.000000 HSMMtube DNaseI HS Overlap Signal from ENCODE/Duke 2 195 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMMtube DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel HSMMtube OS\ subGroups view=SIGBO cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeOpenChromDnaseHsmmtBaseOverlapSignal\ type bigWig 0.000000 328.000000\ wgEncodeRikenCageHuvecCytosolPamAln HUVE cyto pA- A 1 bam HUVEC cytosol polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN 0 195 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC cytosol polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HUVE cyto pA- A 1\ subGroups view=Alignments cellType=t2HUVEC localization=cytosol rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageHuvecCytosolPamAln\ type bam\ wgEncodeCshlShortRnaSeqImr90NucleusShorttotalTapMinusRep1 IMR9 nucl TAP - 1 bigWig 1.000000 39546976.000000 IMR90 TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 195 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 nucl TAP - 1\ subGroups view=MinusSignal cellType=t2IMR90 localization=NUCLEUS protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90NucleusShorttotalTapMinusRep1\ type bigWig 1.000000 39546976.000000\ wgEncodeSydhTfbsK562CmycIggrabPk K562 cMyc IgR narrowPeak K562 c-Myc IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 195 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 c-Myc IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 cMyc IgR\ subGroups view=Peaks factor=CMYC cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562CmycIggrabPk\ type narrowPeak\ wgEncodeAwgTfbsHaibK562Hdac2sc6296V0416102UniPk K562 HDAC2 h narrowPeak K562 TFBS Uniform Peaks of HDAC2_(SC-6296) from ENCODE/HudsonAlpha/Analysis 1 195 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of HDAC2_(SC-6296) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 HDAC2 h\ subGroups tier=a10 cellType=a10K562 factor=HDAC2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Hdac2sc6296V0416102UniPk\ wgEncodeUwDgfTh1Raw Th1 Raw 1 bigWig 1.000000 108696.000000 Th1 DNaseI DGF Raw Signal Rep 1 from ENCODE/UW 0 195 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th1 DNaseI DGF Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel Th1 Raw 1\ subGroups view=zRaw cellType=t3TH01 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh1Raw\ type bigWig 1.000000 108696.000000\ wgEncodeHaibMethylRrbsU87HaibSitesRep2 U87 2 bed 9 + U87 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 195 0 0 0 127 127 127 0 0 0 regulation 1 longLabel U87 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel U87 2\ subGroups cellType=t3U87 obtainedBy=HAIB treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsU87HaibSitesRep2\ type bed 9 +\ wgEncodeBroadHistoneA549H3k79me2Dex100nmPk A549 DEX H3K79m2 broadPeak A549 DEX 100 nM H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 196 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 DEX 100 nM H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 DEX H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549H3k79me2Dex100nmPk\ type broadPeak\ wgEncodeUwHistoneBjH3k27me3StdPkRep1 BJ H3K27M3 Pk 1 narrowPeak BJ H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 196 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel BJ H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t3BJ rep=rep1 treatment=zNone\ track wgEncodeUwHistoneBjH3k27me3StdPkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqCd20CellPamMinusRep1 CD20 cel pA- - 1 bigWig 1.000000 1599361.000000 CD20+ whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 196 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD20+ whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel CD20 cel pA- - 1\ subGroups view=MinusSignal cellType=t2BCELLSCD20 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqCd20CellPamMinusRep1\ type bigWig 1.000000 1599361.000000\ encTfChipPkENCFF405NFV GM12878 TBX21 narrowPeak Transcription Factor ChIP-seq Peaks of TBX21 in GM12878 from ENCODE 3 (ENCFF405NFV) 1 196 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of TBX21 in GM12878 from ENCODE 3 (ENCFF405NFV)\ parent encTfChipPk off\ shortLabel GM12878 TBX21\ subGroups cellType=GM12878 factor=TBX21\ track encTfChipPkENCFF405NFV\ wgEncodeHaibTfbsGm12878RxlchPcr2xRawRep1 GM78 RvXL PCR2 1 bigWig 0.602447 112.959000 GM12878 Control PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 196 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Control PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RvXL PCR2 1\ subGroups view=RawSignal factor=zRXLCH cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878RxlchPcr2xRawRep1\ type bigWig 0.602447 112.959000\ wgEncodeUwDnaseH7esDiffa5dRawRep1 H7h difPA5 Sg 1 bigWig 1.000000 30533.000000 H7-hESC diffProtA 5 d DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 196 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC diffProtA 5 d DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel H7h difPA5 Sg 1\ subGroups view=zRSig cellType=t3H7HESC treatment=DIFFA5D rep=rep1\ track wgEncodeUwDnaseH7esDiffa5dRawRep1\ type bigWig 1.000000 30533.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_ctss_rev H9MelanocyticInduction_Day03Br3- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_reverse 0 196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep3%20%28H9EB-3%20d3%29.CNhs12910.12825-136I8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12825-136I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_tpm_rev H9MelanocyticInduction_Day03Br3- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_reverse 1 196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep3%20%28H9EB-3%20d3%29.CNhs12910.12825-136I8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12825-136I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHaspCtcfStdPkRep2 HAsp CTCF Pk 2 narrowPeak HA-sp CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 196 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-sp CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HAsp CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3HASP rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHaspCtcfStdPkRep2\ type narrowPeak\ wgEncodeOpenChromDnaseHtr8Pk HTR8svn Pk narrowPeak HTR8svn DNaseI HS Peaks from ENCODE/Duke 3 196 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HTR8svn DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel HTR8svn Pk\ subGroups view=Peaks cellType=t3HTR8SVN treatment=zNONE\ track wgEncodeOpenChromDnaseHtr8Pk\ type narrowPeak\ wgEncodeRikenCageHuvecCytosolPapTssHmm HUVE cyto pA+ bed 6 HUVEC cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 196 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HUVE cyto pA+\ subGroups view=TssHmm cellType=t2HUVEC localization=cytosol rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHuvecCytosolPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqImr90NucleusShorttotalTapMinusRep2 IMR9 nucl TAP - 2 bigWig 1.000000 19802312.000000 IMR90 TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 196 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel IMR9 nucl TAP - 2\ subGroups view=MinusSignal cellType=t2IMR90 localization=NUCLEUS protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90NucleusShorttotalTapMinusRep2\ type bigWig 1.000000 19802312.000000\ wgEncodeSydhTfbsK562CmycIggrabSig K562 cMyc IgR bigWig 1.000000 15435.000000 K562 c-Myc IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 196 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 c-Myc IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 cMyc IgR\ subGroups view=Signal factor=CMYC cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562CmycIggrabSig\ type bigWig 1.000000 15435.000000\ wgEncodeAwgTfbsBroadK562Hdac6a301341aUniPk K562 HDAC6 narrowPeak K562 TFBS Uniform Peaks of HDAC6_(A301-341A) from ENCODE/Broad/Analysis 1 196 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of HDAC6_(A301-341A) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 HDAC6\ subGroups tier=a10 cellType=a10K562 factor=HDAC6 lab=Broad\ track wgEncodeAwgTfbsBroadK562Hdac6a301341aUniPk\ wgEncodeUwDgfTh1RawRep2 Th1 Raw 2 bigWig 1.000000 181173.000000 Th1 DNaseI DGF Raw Signal Rep 2 from ENCODE/UW 0 196 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th1 DNaseI DGF Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel Th1 Raw 2\ subGroups view=zRaw cellType=t3TH01 treatment=aNONE rep=rep2\ track wgEncodeUwDgfTh1RawRep2\ type bigWig 1.000000 181173.000000\ wgEncodeHaibMethylRrbsUch1DukeSitesRep1 UCH-1 1 bed 9 + UCH-1 Methyl RRBS Rep 1 from ENCODE/HudsonAlpha 1 196 0 0 0 127 127 127 0 0 0 regulation 1 longLabel UCH-1 Methyl RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel UCH-1 1\ subGroups cellType=t3UCH1 obtainedBy=DUKE treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsUch1DukeSitesRep1\ type bed 9 +\ wgEncodeBroadHistoneA549H3k79me2Dex100nmSig A549 DEX H3K79m2 bigWig 0.040000 7271.000000 A549 DEX 100 nM H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 197 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 DEX 100 nM H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 DEX H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549H3k79me2Dex100nmSig\ type bigWig 0.040000 7271.000000\ wgEncodeUwHistoneBjH3k27me3StdRawRep1 BJ H3K27M3 Sg 1 bigWig 1.000000 5970.000000 BJ H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 197 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel BJ H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t3BJ rep=rep1 treatment=zNone\ track wgEncodeUwHistoneBjH3k27me3StdRawRep1\ type bigWig 1.000000 5970.000000\ wgEncodeCshlLongRnaSeqCd20CellPamMinusRep2 CD20 cel pA- - 2 bigWig 1.000000 1807477.000000 CD20+ whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 197 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD20+ whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel CD20 cel pA- - 2\ subGroups view=MinusSignal cellType=t2BCELLSCD20 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqCd20CellPamMinusRep2\ type bigWig 1.000000 1807477.000000\ encTfChipPkENCFF160WLU GM12878 TCF12 1 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in GM12878 from ENCODE 3 (ENCFF160WLU) 1 197 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in GM12878 from ENCODE 3 (ENCFF160WLU)\ parent encTfChipPk off\ shortLabel GM12878 TCF12 1\ subGroups cellType=GM12878 factor=TCF12\ track encTfChipPkENCFF160WLU\ wgEncodeHaibTfbsGm12878RxlchPcr2xRawRep2 GM78 RvXL PCR2 2 bigWig 0.709333 100.193001 GM12878 Control PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 197 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Control PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RvXL PCR2 2\ subGroups view=RawSignal factor=zRXLCH cellType=t1GM12878 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12878RxlchPcr2xRawRep2\ type bigWig 0.709333 100.193001\ wgEncodeUwDnaseH7esDiffa9dRawRep1 H7h difPA9 Sg 1 bigWig 1.000000 32231.000000 H7-hESC diffProtA 9 d DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 197 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC diffProtA 9 d DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel H7h difPA9 Sg 1\ subGroups view=zRSig cellType=t3H7HESC treatment=DIFFA9D rep=rep1\ track wgEncodeUwDnaseH7esDiffa9dRawRep1\ type bigWig 1.000000 32231.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_ctss_fwd H9MelanocyticInduction_Day06Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_forward 0 197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep1%20%28H9EB-1%20d6%29.CNhs12896.12630-134F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12630-134F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_tpm_fwd H9MelanocyticInduction_Day06Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_forward 1 197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep1%20%28H9EB-1%20d6%29.CNhs12896.12630-134F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12630-134F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHaspCtcfStdRawRep2 HAsp CTCF Sg 2 bigWig 1.000000 8548.000000 HA-sp CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 197 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HA-sp CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HAsp CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3HASP rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHaspCtcfStdRawRep2\ type bigWig 1.000000 8548.000000\ wgEncodeOpenChromDnaseHtr8Sig HTR8svn DS bigWig 0.000000 0.930700 HTR8svn DNaseI HS Density Signal from ENCODE/Duke 2 197 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HTR8svn DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel HTR8svn DS\ subGroups view=SIG cellType=t3HTR8SVN treatment=zNONE\ track wgEncodeOpenChromDnaseHtr8Sig\ type bigWig 0.000000 0.930700\ wgEncodeRikenCageHuvecCytosolPapPlusSignalRep3 HUVE cyto pA+ + 1 bigWig 0.040000 10856.809570 HUVEC cytosol polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN 2 197 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC cytosol polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HUVE cyto pA+ + 1\ subGroups view=PlusRawSignal cellType=t2HUVEC localization=cytosol rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageHuvecCytosolPapPlusSignalRep3\ type bigWig 0.040000 10856.809570\ wgEncodeCshlShortRnaSeqImr90NucleusShorttotalTapPlusRep1 IMR9 nucl TAP + 1 bigWig 1.000000 47475744.000000 IMR90 TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 197 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 nucl TAP + 1\ subGroups view=PlusSignal cellType=t2IMR90 localization=NUCLEUS protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqImr90NucleusShorttotalTapPlusRep1\ type bigWig 1.000000 47475744.000000\ wgEncodeAwgTfbsUchicagoK562Ehdac8UniPk K562 HDAC8 narrowPeak K562 TFBS Uniform Peaks of eGFP-HDAC8 from ENCODE/UChicago/Analysis 1 197 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of eGFP-HDAC8 from ENCODE/UChicago/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 HDAC8\ subGroups tier=a10 cellType=a10K562 factor=HDAC8 lab=UChicago\ track wgEncodeAwgTfbsUchicagoK562Ehdac8UniPk\ wgEncodeSydhTfbsK562CmycIfna30StdPk K562 IFa3 cMyc Sd narrowPeak K562 c-Myc Standard IFNa 30min ChIP-seq Peaks from ENCODE/SYDH 3 197 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 c-Myc Standard IFNa 30min ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFa3 cMyc Sd\ subGroups view=Peaks factor=CMYC cellType=t1K562 control=STD treatment=IFNa30\ track wgEncodeSydhTfbsK562CmycIfna30StdPk\ type narrowPeak\ wgEncodeUwDgfTh1wb33676984Hotspots Th1 33676984 Hot broadPeak Th1 Wb33676984 DNaseI DGF Hotspots from ENCODE/UW 0 197 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th1 Wb33676984 DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel Th1 33676984 Hot\ subGroups view=Hotspots cellType=t3TH01WB33676984 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh1wb33676984Hotspots\ type broadPeak\ wgEncodeHaibMethylRrbsUch1DukeSitesRep2 UCH-1 2 bed 9 + UCH-1 Methyl RRBS Rep 2 from ENCODE/HudsonAlpha 1 197 0 0 0 127 127 127 0 0 0 regulation 1 longLabel UCH-1 Methyl RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel UCH-1 2\ subGroups cellType=t3UCH1 obtainedBy=DUKE treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsUch1DukeSitesRep2\ type bed 9 +\ wgEncodeBroadHistoneA549H3k79me2Etoh02Pk A549 EtOH H3K79m2 broadPeak A549 EtOH 0.02% H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 198 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 EtOH 0.02% H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 EtOH H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k79me2Etoh02Pk\ type broadPeak\ wgEncodeUwHistoneBjH3k27me3StdHotspotsRep2 BJ H3K27M3 Ht 2 broadPeak BJ H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 198 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel BJ H3K27M3 Ht 2\ subGroups view=Hot factor=H3K27ME3 cellType=t3BJ rep=rep2 treatment=zNone\ track wgEncodeUwHistoneBjH3k27me3StdHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqCd20CellPamPlusRep1 CD20 cel pA- + 1 bigWig 1.000000 3144462.000000 CD20+ whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 198 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD20+ whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel CD20 cel pA- + 1\ subGroups view=PlusSignal cellType=t2BCELLSCD20 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqCd20CellPamPlusRep1\ type bigWig 1.000000 3144462.000000\ encTfChipPkENCFF017LZE GM12878 TCF12 2 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in GM12878 from ENCODE 3 (ENCFF017LZE) 1 198 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in GM12878 from ENCODE 3 (ENCFF017LZE)\ parent encTfChipPk off\ shortLabel GM12878 TCF12 2\ subGroups cellType=GM12878 factor=TCF12\ track encTfChipPkENCFF017LZE\ wgEncodeHaibTfbsGm12878RxlchV0416101RawRep1 GM78 RvXL V101 1 bigWig 0.088698 137.438004 GM12878 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 198 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RvXL V101 1\ subGroups view=RawSignal factor=zRXLCH cellType=t1GM12878 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878RxlchV0416101RawRep1\ type bigWig 0.088698 137.438004\ wgEncodeUwDnaseH7esRawRep1 H7h Sg 1 bigWig 1.000000 33541.000000 H7-hESC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 198 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel H7h Sg 1\ subGroups view=zRSig cellType=t3H7HESC rep=rep1 treatment=None\ track wgEncodeUwDnaseH7esRawRep1\ type bigWig 1.000000 33541.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_ctss_rev H9MelanocyticInduction_Day06Br1- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_reverse 0 198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep1%20%28H9EB-1%20d6%29.CNhs12896.12630-134F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12630-134F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_tpm_rev H9MelanocyticInduction_Day06Br1- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_reverse 1 198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep1%20%28H9EB-1%20d6%29.CNhs12896.12630-134F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12630-134F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHaspInputStdRawRep1 HAsp In Sg 1 bigWig 1.000000 22062.000000 HA-sp Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 198 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HA-sp Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HAsp In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HASP rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHaspInputStdRawRep1\ type bigWig 1.000000 22062.000000\ wgEncodeOpenChromDnaseHtr8BaseOverlapSignal HTR8svn OS bigWig 0.000000 187.000000 HTR8svn DNaseI HS Overlap Signal from ENCODE/Duke 2 198 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HTR8svn DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel HTR8svn OS\ subGroups view=SIGBO cellType=t3HTR8SVN treatment=zNONE\ track wgEncodeOpenChromDnaseHtr8BaseOverlapSignal\ type bigWig 0.000000 187.000000\ wgEncodeRikenCageHuvecCytosolPapPlusSignalRep4 HUVE cyto pA+ + 2 bigWig 0.040000 14849.919922 HUVEC cytosol polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN 2 198 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC cytosol polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HUVE cyto pA+ + 2\ subGroups view=PlusRawSignal cellType=t2HUVEC localization=cytosol rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageHuvecCytosolPapPlusSignalRep4\ type bigWig 0.040000 14849.919922\ wgEncodeCshlShortRnaSeqImr90NucleusShorttotalTapPlusRep2 IMR9 nucl TAP + 2 bigWig 1.000000 25724416.000000 IMR90 TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 198 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel IMR9 nucl TAP + 2\ subGroups view=PlusSignal cellType=t2IMR90 localization=NUCLEUS protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqImr90NucleusShorttotalTapPlusRep2\ type bigWig 1.000000 25724416.000000\ wgEncodeAwgTfbsSydhK562Hmgn3UniPk K562 HMGN3 narrowPeak K562 TFBS Uniform Peaks of HMGN3 from ENCODE/Harvard/Analysis 1 198 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of HMGN3 from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 HMGN3\ subGroups tier=a10 cellType=a10K562 factor=HMGN3 lab=Harvard\ track wgEncodeAwgTfbsSydhK562Hmgn3UniPk\ wgEncodeSydhTfbsK562CmycIfna30StdSig K562 IFa3 cMyc Sd bigWig 0.000000 8599.299805 K562 c-Myc Standard IFNa 30min ChIP-seq Signal from ENCODE/SYDH 2 198 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 c-Myc Standard IFNa 30min ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFa3 cMyc Sd\ subGroups view=Signal factor=CMYC cellType=t1K562 control=STD treatment=IFNa30\ track wgEncodeSydhTfbsK562CmycIfna30StdSig\ type bigWig 0.000000 8599.299805\ wgEncodeUwDgfTh1wb33676984Pk Th1 33676984 Pk narrowPeak Th1 Wb33676984 DNaseI DGF Peaks from ENCODE/UW 0 198 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th1 Wb33676984 DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel Th1 33676984 Pk\ subGroups view=Peaks cellType=t3TH01WB33676984 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh1wb33676984Pk\ type narrowPeak\ wgEncodeHaibMethylRrbsBcuterusbn0765BiochainSitesRep1 Uterus_BC 1 bed 9 + Uterus BC BN0765 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha 1 198 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Uterus BC BN0765 Methyl-RRBS Rep 1 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Uterus_BC 1\ subGroups cellType=t3UTERUSBCBN0765 obtainedBy=BioChain treatment=zNone rep=rep1\ track wgEncodeHaibMethylRrbsBcuterusbn0765BiochainSitesRep1\ type bed 9 +\ wgEncodeBroadHistoneA549H3k79me2Etoh02Sig A549 EtOH H3K79m2 bigWig 0.040000 642.719971 A549 EtOH 0.02% H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 199 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 EtOH 0.02% H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 EtOH H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H3k79me2Etoh02Sig\ type bigWig 0.040000 642.719971\ wgEncodeUwHistoneBjH3k27me3StdPkRep2 BJ H3K27M3 Pk 2 narrowPeak BJ H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 199 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel BJ H3K27M3 Pk 2\ subGroups view=Peaks factor=H3K27ME3 cellType=t3BJ rep=rep2 treatment=zNone\ track wgEncodeUwHistoneBjH3k27me3StdPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqCd20CellPamPlusRep2 CD20 cel pA- + 2 bigWig 1.000000 2185589.000000 CD20+ whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 199 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD20+ whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel CD20 cel pA- + 2\ subGroups view=PlusSignal cellType=t2BCELLSCD20 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqCd20CellPamPlusRep2\ type bigWig 1.000000 2185589.000000\ encTfChipPkENCFF305ICK GM12878 TCF7 narrowPeak Transcription Factor ChIP-seq Peaks of TCF7 in GM12878 from ENCODE 3 (ENCFF305ICK) 1 199 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of TCF7 in GM12878 from ENCODE 3 (ENCFF305ICK)\ parent encTfChipPk off\ shortLabel GM12878 TCF7\ subGroups cellType=GM12878 factor=TCF7\ track encTfChipPkENCFF305ICK\ wgEncodeHaibTfbsGm12878RxlchV0416102RawRep1 GM78 RvXL V102 1 bigWig 0.183798 173.873001 GM12878 Control v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 199 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Control v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RvXL V102 1\ subGroups view=RawSignal factor=zRXLCH cellType=t1GM12878 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878RxlchV0416102RawRep1\ type bigWig 0.183798 173.873001\ wgEncodeUwDnaseH7esDiffa14dHotspotsRep2 H7h difPA14 Ht 2 broadPeak H7-hESC diffProtA 14 d DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 199 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC diffProtA 14 d DNaseI HS HotSpots Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel H7h difPA14 Ht 2\ subGroups view=Hot cellType=t3H7HESC treatment=DIFFA14D rep=rep2\ track wgEncodeUwDnaseH7esDiffa14dHotspotsRep2\ type broadPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_ctss_fwd H9MelanocyticInduction_Day06Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_forward 0 199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep2%20%28H9EB-2%20d6%29.CNhs12828.12728-135H1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12728-135H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_tpm_fwd H9MelanocyticInduction_Day06Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_forward 1 199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep2%20%28H9EB-2%20d6%29.CNhs12828.12728-135H1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12728-135H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHbmecCtcfStdHotspotsRep1 HBMEC CTCF Ht 1 broadPeak HBMEC CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 199 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBMEC CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HBMEC CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HBMEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHbmecCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeOpenChromDnaseHuh7Pk Huh-7 Pk narrowPeak Huh-7 DNaseI HS Peaks from ENCODE/Duke 3 199 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Huh-7 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Huh-7 Pk\ subGroups view=Peaks cellType=t3HUH7 treatment=zNONE\ track wgEncodeOpenChromDnaseHuh7Pk\ type narrowPeak\ wgEncodeRikenCageHuvecCytosolPapMinusSignalRep3 HUVE cyto pA+ - 1 bigWig 0.040000 10944.379883 HUVEC cytosol polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN 2 199 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC cytosol polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HUVE cyto pA+ - 1\ subGroups view=MinusRawSignal cellType=t2HUVEC localization=cytosol rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageHuvecCytosolPapMinusSignalRep3\ type bigWig 0.040000 10944.379883\ wgEncodeSydhTfbsK562CmycIfna6hStdPk K562 IFa6 cMyc Sd narrowPeak K562 c-Myc Standard IFNa 6hrs ChIP-seq Peaks from ENCODE/SYDH 3 199 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 c-Myc Standard IFNa 6hrs ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFa6 cMyc Sd\ subGroups view=Peaks factor=CMYC cellType=t1K562 control=STD treatment=IFNa6h\ track wgEncodeSydhTfbsK562CmycIfna6hStdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Irf1Ifna30UniPk K562+IFNa30 IRF1 narrowPeak K562 (IFNa30) TFBS Uniform Peaks of IRF1 from ENCODE/Stanford/Analysis 1 199 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNa30) TFBS Uniform Peaks of IRF1 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNa30 IRF1\ subGroups tier=a10 cellType=a10K562 factor=IRF1 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Irf1Ifna30UniPk\ wgEncodeCshlShortRnaSeqMcf7CellCiptapContigs MCF7 cell CIP C bed 6 MCF-7 CIP-TAP whole cell small RNA-seq Contigs from ENCODE/CSHL 2 199 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 CIP-TAP whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel MCF7 cell CIP C\ subGroups view=Contigs rep=Pooled cellType=t2MCF7 localization=CELL protocol=CIPTAP rank=none\ track wgEncodeCshlShortRnaSeqMcf7CellCiptapContigs\ type bed 6\ wgEncodeUwDgfTh1wb33676984Sig Th1 33676984 Sig bigWig 1.000000 16995.000000 Th1 Wb33676984 DNaseI DGF Per-base Signal from ENCODE/UW 2 199 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th1 Wb33676984 DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel Th1 33676984 Sig\ subGroups view=Signal cellType=t3TH01WB33676984 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh1wb33676984Sig\ type bigWig 1.000000 16995.000000\ wgEncodeHaibMethylRrbsBcuterusbn0765BiochainSitesRep2 Uterus_BC 2 bed 9 + Uterus BC BN0765 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha 1 199 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Uterus BC BN0765 Methyl-RRBS Rep 2 from ENCODE/HudsonAlpha\ parent wgEncodeHaibMethylRrbs off\ shortLabel Uterus_BC 2\ subGroups cellType=t3UTERUSBCBN0765 obtainedBy=BioChain treatment=zNone rep=rep2\ track wgEncodeHaibMethylRrbsBcuterusbn0765BiochainSitesRep2\ type bed 9 +\ wgEncodeBroadHistoneA549H4k20me1Etoh02Pk A549 EtOH H4K20m1 broadPeak A549 EtOH 0.02% H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 200 0 0 0 127 127 127 1 0 0 regulation 1 longLabel A549 EtOH 0.02% H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel A549 EtOH H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H4k20me1Etoh02Pk\ type broadPeak\ wgEncodeUwHistoneBjH3k27me3StdRawRep2 BJ H3K27M3 Sg 2 bigWig 1.000000 6945.000000 BJ H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 200 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel BJ H3K27M3 Sg 2\ subGroups view=zRSig factor=H3K27ME3 cellType=t3BJ rep=rep2 treatment=zNone\ track wgEncodeUwHistoneBjH3k27me3StdRawRep2\ type bigWig 1.000000 6945.000000\ wgEncodeCshlLongRnaSeqCd20CellPapAlnRep1 CD20 cel pA+ A 1 bam CD20+ whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 200 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD20+ whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel CD20 cel pA+ A 1\ subGroups view=Alignments cellType=t2BCELLSCD20 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqCd20CellPapAlnRep1\ type bam\ encTfChipPkENCFF241GZK GM12878 TRIM22 1 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM22 in GM12878 from ENCODE 3 (ENCFF241GZK) 1 200 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of TRIM22 in GM12878 from ENCODE 3 (ENCFF241GZK)\ parent encTfChipPk off\ shortLabel GM12878 TRIM22 1\ subGroups cellType=GM12878 factor=TRIM22\ track encTfChipPkENCFF241GZK\ wgEncodeHaibTfbsGm12878RxlchV0422111RawRep1 GM78 RvXL V11 1 bigWig 1.000000 9128.000000 GM12878 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 200 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RvXL V11 1\ subGroups view=RawSignal factor=zRXLCH cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12878RxlchV0422111RawRep1\ type bigWig 1.000000 9128.000000\ wgEncodeUwDnaseH7esDiffa5dHotspotsRep2 H7h difPA5 Ht 2 broadPeak H7-hESC diffProtA 5 d DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 200 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC diffProtA 5 d DNaseI HS HotSpots Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel H7h difPA5 Ht 2\ subGroups view=Hot cellType=t3H7HESC treatment=DIFFA5D rep=rep2\ track wgEncodeUwDnaseH7esDiffa5dHotspotsRep2\ type broadPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_ctss_rev H9MelanocyticInduction_Day06Br2- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_reverse 0 200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep2%20%28H9EB-2%20d6%29.CNhs12828.12728-135H1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12728-135H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_tpm_rev H9MelanocyticInduction_Day06Br2- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_reverse 1 200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep2%20%28H9EB-2%20d6%29.CNhs12828.12728-135H1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12728-135H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHbmecCtcfStdPkRep1 HBMEC CTCF Pk 1 narrowPeak HBMEC CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 200 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBMEC CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HBMEC CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HBMEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHbmecCtcfStdPkRep1\ type narrowPeak\ wgEncodeOpenChromDnaseHuh7Sig Huh-7 DS bigWig 0.000000 2.031400 Huh-7 DNaseI HS Density Signal from ENCODE/Duke 2 200 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Huh-7 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Huh-7 DS\ subGroups view=SIG cellType=t3HUH7 treatment=zNONE\ track wgEncodeOpenChromDnaseHuh7Sig\ type bigWig 0.000000 2.031400\ wgEncodeRikenCageHuvecCytosolPapMinusSignalRep4 HUVE cyto pA+ - 2 bigWig 0.040000 7272.350098 HUVEC cytosol polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN 2 200 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC cytosol polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HUVE cyto pA+ - 2\ subGroups view=MinusRawSignal cellType=t2HUVEC localization=cytosol rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageHuvecCytosolPapMinusSignalRep4\ type bigWig 0.040000 7272.350098\ wgEncodeSydhTfbsK562CmycIfna6hStdSig K562 IFa6 cMyc Sd bigWig 0.000000 13450.799805 K562 c-Myc Standard IFNa 6hrs ChIP-seq Signal from ENCODE/SYDH 2 200 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 c-Myc Standard IFNa 6hrs ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFa6 cMyc Sd\ subGroups view=Signal factor=CMYC cellType=t1K562 control=STD treatment=IFNa6h\ track wgEncodeSydhTfbsK562CmycIfna6hStdSig\ type bigWig 0.000000 13450.799805\ wgEncodeAwgTfbsSydhK562Irf1Ifna6hUniPk K562+IFNa6h IRF1 narrowPeak K562 (IFNa6h) TFBS Uniform Peaks of IRF1 from ENCODE/Stanford/Analysis 1 200 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNa6h) TFBS Uniform Peaks of IRF1 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNa6h IRF1\ subGroups tier=a10 cellType=a10K562 factor=IRF1 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Irf1Ifna6hUniPk\ wgEncodeCshlShortRnaSeqMcf7CellShorttotalCiptapMinusRep3 MCF7 cell CIP - 1 bigWig 1.000000 5859769.000000 MCF-7 CIP-TAP whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 200 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 CIP-TAP whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel MCF7 cell CIP - 1\ subGroups view=MinusSignal cellType=t2MCF7 localization=CELL protocol=CIPTAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqMcf7CellShorttotalCiptapMinusRep3\ type bigWig 1.000000 5859769.000000\ wgEncodeUwDgfTh1wb33676984Raw Th1 33676984 Raw bigWig 1.000000 138057.000000 Th1 Wb33676984 DNaseI DGF Raw Signal from ENCODE/UW 0 200 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th1 Wb33676984 DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel Th1 33676984 Raw\ subGroups view=zRaw cellType=t3TH01WB33676984 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh1wb33676984Raw\ type bigWig 1.000000 138057.000000\ wgEncodeBroadHistoneA549H4k20me1Etoh02Sig A549 EtOH H4K20m1 bigWig 0.040000 701.760010 A549 EtOH 0.02% H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 201 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 EtOH 0.02% H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 EtOH H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549H4k20me1Etoh02Sig\ type bigWig 0.040000 701.760010\ wgEncodeUwHistoneBjH3k36me3StdHotspotsRep1 BJ H3K36M3 Ht 1 broadPeak BJ H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 201 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel BJ H3K36M3 Ht 1\ subGroups view=Hot factor=H3K36ME3 cellType=t3BJ rep=rep1 treatment=zNone\ track wgEncodeUwHistoneBjH3k36me3StdHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqCd20CellPapAlnRep2 CD20 cel pA+ A 2 bam CD20+ whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 201 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD20+ whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel CD20 cel pA+ A 2\ subGroups view=Alignments cellType=t2BCELLSCD20 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqCd20CellPapAlnRep2\ type bam\ encTfChipPkENCFF899JBI GM12878 TRIM22 2 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM22 in GM12878 from ENCODE 3 (ENCFF899JBI) 1 201 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of TRIM22 in GM12878 from ENCODE 3 (ENCFF899JBI)\ parent encTfChipPk off\ shortLabel GM12878 TRIM22 2\ subGroups cellType=GM12878 factor=TRIM22\ track encTfChipPkENCFF899JBI\ wgEncodeHaibTfbsGm12878RxlchV0422111RawRep3 GM78 RvXL V11 3 bigWig 1.000000 7763.000000 GM12878 Control v042211.1 ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB 2 201 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Control v042211.1 ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RvXL V11 3\ subGroups view=RawSignal factor=zRXLCH cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep3\ track wgEncodeHaibTfbsGm12878RxlchV0422111RawRep3\ type bigWig 1.000000 7763.000000\ wgEncodeUwDnaseH7esHotspotsRep2 H7h Ht 2 broadPeak H7-hESC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 201 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel H7h Ht 2\ subGroups view=Hot cellType=t3H7HESC rep=rep2 treatment=None\ track wgEncodeUwDnaseH7esHotspotsRep2\ type broadPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_ctss_fwd H9MelanocyticInduction_Day06Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_forward 0 201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep3%20%28H9EB-3%20d6%29.CNhs12911.12826-136I9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12826-136I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_tpm_fwd H9MelanocyticInduction_Day06Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_forward 1 201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep3%20%28H9EB-3%20d6%29.CNhs12911.12826-136I9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12826-136I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHbmecCtcfStdRawRep1 HBMEC CTCF Sg 1 bigWig 1.000000 5796.000000 HBMEC CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 201 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HBMEC CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HBMEC CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HBMEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHbmecCtcfStdRawRep1\ type bigWig 1.000000 5796.000000\ wgEncodeOpenChromDnaseHuh7BaseOverlapSignal Huh-7 OS bigWig 0.000000 209.000000 Huh-7 DNaseI HS Overlap Signal from ENCODE/Duke 2 201 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Huh-7 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Huh-7 OS\ subGroups view=SIGBO cellType=t3HUH7 treatment=zNONE\ track wgEncodeOpenChromDnaseHuh7BaseOverlapSignal\ type bigWig 0.000000 209.000000\ wgEncodeRikenCageHuvecCytosolPapAlnRep3 HUVE cyto pA+ A 1 bam HUVEC cytosol polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN 0 201 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC cytosol polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HUVE cyto pA+ A 1\ subGroups view=Alignments cellType=t2HUVEC localization=cytosol rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageHuvecCytosolPapAlnRep3\ type bam\ wgEncodeSydhTfbsK562CmycIfng30StdPk K562 IFg3 cMyc Sd narrowPeak K562 c-Myc Standard IFNg 30min ChIP-seq Peaks from ENCODE/SYDH 3 201 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 c-Myc Standard IFNg 30min ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFg3 cMyc Sd\ subGroups view=Peaks factor=CMYC cellType=t1K562 control=STD treatment=IFNg30\ track wgEncodeSydhTfbsK562CmycIfng30StdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Irf1Ifng30UniPk K562+IFNg30 IRF1 narrowPeak K562 (IFNg30) TFBS Uniform Peaks of IRF1 from ENCODE/Stanford/Analysis 1 201 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNg30) TFBS Uniform Peaks of IRF1 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNg30 IRF1\ subGroups tier=a10 cellType=a10K562 factor=IRF1 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Irf1Ifng30UniPk\ wgEncodeCshlShortRnaSeqMcf7CellShorttotalCiptapMinusRep4 MCF7 cell CIP - 2 bigWig 1.000000 10455944.000000 MCF-7 CIP-TAP whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 201 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 CIP-TAP whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel MCF7 cell CIP - 2\ subGroups view=MinusSignal cellType=t2MCF7 localization=CELL protocol=CIPTAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqMcf7CellShorttotalCiptapMinusRep4\ type bigWig 1.000000 10455944.000000\ wgEncodeUwDgfTh2Hotspots Th2 Hot broadPeak Th2 DNaseI DGF Hotspots from ENCODE/UW 0 201 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th2 DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel Th2 Hot\ subGroups view=Hotspots cellType=t3TH02 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh2Hotspots\ type broadPeak\ wgEncodeBroadHistoneA549ControlDex100nmSig A549 DEX Control bigWig 0.040000 41124.078125 A549 DEX 100 nM Control Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 202 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 DEX 100 nM Control Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 DEX Control\ subGroups view=Signal factor=zCTRL cellType=t2A549 treatment=DEX100NM\ track wgEncodeBroadHistoneA549ControlDex100nmSig\ type bigWig 0.040000 41124.078125\ wgEncodeUwHistoneBjH3k36me3StdPkRep1 BJ H3K36M3 Pk 1 narrowPeak BJ H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 202 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel BJ H3K36M3 Pk 1\ subGroups view=Peaks factor=H3K36ME3 cellType=t3BJ rep=rep1 treatment=zNone\ track wgEncodeUwHistoneBjH3k36me3StdPkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqCd20CellPapContigs CD20 cel pA+ C bed 6 + CD20+ whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 202 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD20+ whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel CD20 cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2BCELLSCD20 localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqCd20CellPapContigs\ type bed 6 +\ encTfChipPkENCFF298UPI GM12878 UBTF narrowPeak Transcription Factor ChIP-seq Peaks of UBTF in GM12878 from ENCODE 3 (ENCFF298UPI) 1 202 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of UBTF in GM12878 from ENCODE 3 (ENCFF298UPI)\ parent encTfChipPk off\ shortLabel GM12878 UBTF\ subGroups cellType=GM12878 factor=UBTF\ track encTfChipPkENCFF298UPI\ wgEncodeHaibTfbsGm12878RxlchV0422111RawRep4 GM78 RvXL V11 4 bigWig 1.000000 9780.000000 GM12878 Control v042211.1 ChIP-seq Raw Signal Rep 4 from ENCODE/HAIB 2 202 153 38 0 204 146 127 0 0 0 regulation 0 color 153,38,0\ longLabel GM12878 Control v042211.1 ChIP-seq Raw Signal Rep 4 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM78 RvXL V11 4\ subGroups view=RawSignal factor=zRXLCH cellType=t1GM12878 protocol=V0422111 treatment=NONE rep=rep4\ track wgEncodeHaibTfbsGm12878RxlchV0422111RawRep4\ type bigWig 1.000000 9780.000000\ wgEncodeUwDnaseH7esDiffa14dPkRep2 H7h difPA14 Pk 2 narrowPeak H7-hESC diffProtA 14 d DNaseI HS Peaks Rep 2 from ENCODE/UW 1 202 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC diffProtA 14 d DNaseI HS Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel H7h difPA14 Pk 2\ subGroups view=Peaks cellType=t3H7HESC treatment=DIFFA14D rep=rep2\ track wgEncodeUwDnaseH7esDiffa14dPkRep2\ type narrowPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_ctss_rev H9MelanocyticInduction_Day06Br3- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_reverse 0 202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep3%20%28H9EB-3%20d6%29.CNhs12911.12826-136I9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12826-136I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_tpm_rev H9MelanocyticInduction_Day06Br3- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_reverse 1 202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep3%20%28H9EB-3%20d6%29.CNhs12911.12826-136I9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12826-136I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHbmecCtcfStdHotspotsRep2 HBMEC CTCF Ht 2 broadPeak HBMEC CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 202 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBMEC CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HBMEC CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3HBMEC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHbmecCtcfStdHotspotsRep2\ type broadPeak\ wgEncodeOpenChromDnaseHuh75Pk Huh-7.5 Pk narrowPeak Huh-7.5 DNaseI HS Peaks from ENCODE/Duke 3 202 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Huh-7.5 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Huh-7.5 Pk\ subGroups view=Peaks cellType=t3HUH75 treatment=zNONE\ track wgEncodeOpenChromDnaseHuh75Pk\ type narrowPeak\ wgEncodeRikenCageHuvecCytosolPapAlnRep4 HUVE cyto pA+ A 2 bam HUVEC cytosol polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN 0 202 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC cytosol polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HUVE cyto pA+ A 2\ subGroups view=Alignments cellType=t2HUVEC localization=cytosol rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageHuvecCytosolPapAlnRep4\ type bam\ wgEncodeSydhTfbsK562CmycIfng30StdSig K562 IFg3 cMyc Sd bigWig 1.000000 5759.000000 K562 c-Myc Standard IFNg 30min ChIP-seq Signal from ENCODE/SYDH 2 202 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 c-Myc Standard IFNg 30min ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFg3 cMyc Sd\ subGroups view=Signal factor=CMYC cellType=t1K562 control=STD treatment=IFNg30\ track wgEncodeSydhTfbsK562CmycIfng30StdSig\ type bigWig 1.000000 5759.000000\ wgEncodeAwgTfbsSydhK562Irf1Ifng6hUniPk K562+IFNg6h IRF1 narrowPeak K562 (IFNg6h) TFBS Uniform Peaks of IRF1 from ENCODE/Stanford/Analysis 1 202 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNg6h) TFBS Uniform Peaks of IRF1 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNg6h IRF1\ subGroups tier=a10 cellType=a10K562 factor=IRF1 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Irf1Ifng6hUniPk\ wgEncodeCshlShortRnaSeqMcf7CellShorttotalCiptapPlusRep3 MCF7 cell CIP + 1 bigWig 1.000000 5834134.000000 MCF-7 CIP-TAP whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 202 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 CIP-TAP whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel MCF7 cell CIP + 1\ subGroups view=PlusSignal cellType=t2MCF7 localization=CELL protocol=CIPTAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqMcf7CellShorttotalCiptapPlusRep3\ type bigWig 1.000000 5834134.000000\ wgEncodeUwDgfTh2Pk Th2 Pk narrowPeak Th2 DNaseI DGF Peaks from ENCODE/UW 0 202 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th2 DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel Th2 Pk\ subGroups view=Peaks cellType=t3TH02 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh2Pk\ type narrowPeak\ wgEncodeBroadHistoneA549ControlEtoh02Sig A549 EtOH Control bigWig 0.040000 125654.882812 A549 EtOH 0.02% Control Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 203 0 0 0 127 127 127 1 0 0 regulation 0 longLabel A549 EtOH 0.02% Control Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel A549 EtOH Control\ subGroups view=Signal factor=zCTRL cellType=t2A549 treatment=ETOH02\ track wgEncodeBroadHistoneA549ControlEtoh02Sig\ type bigWig 0.040000 125654.882812\ wgEncodeUwHistoneBjH3k36me3StdRawRep1 BJ H3K36M3 Sg 1 bigWig 1.000000 8665.000000 BJ H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 203 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel BJ H3K36M3 Sg 1\ subGroups view=zRSig factor=H3K36ME3 cellType=t3BJ rep=rep1 treatment=zNone\ track wgEncodeUwHistoneBjH3k36me3StdRawRep1\ type bigWig 1.000000 8665.000000\ wgEncodeCshlLongRnaSeqCd20CellPapJunctions CD20 cel pA+ J bed 6 + CD20+ whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 203 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD20+ whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel CD20 cel pA+ J\ subGroups view=Junctions cellType=t2BCELLSCD20 localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqCd20CellPapJunctions\ type bed 6 +\ encTfChipPkENCFF372DRC GM12878 USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in GM12878 from ENCODE 3 (ENCFF372DRC) 1 203 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of USF2 in GM12878 from ENCODE 3 (ENCFF372DRC)\ parent encTfChipPk off\ shortLabel GM12878 USF2\ subGroups cellType=GM12878 factor=USF2\ track encTfChipPkENCFF372DRC\ wgEncodeUwDnaseH7esDiffa5dPkRep2 H7h difPA5 Pk 2 narrowPeak H7-hESC diffProtA 5 d DNaseI HS Peaks Rep 2 from ENCODE/UW 1 203 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC diffProtA 5 d DNaseI HS Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel H7h difPA5 Pk 2\ subGroups view=Peaks cellType=t3H7HESC treatment=DIFFA5D rep=rep2\ track wgEncodeUwDnaseH7esDiffa5dPkRep2\ type narrowPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_ctss_fwd H9MelanocyticInduction_Day09Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_forward 0 203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep1%20%28H9EB-1%20d9%29.CNhs12897.12631-134F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12631-134F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_tpm_fwd H9MelanocyticInduction_Day09Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_forward 1 203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep1%20%28H9EB-1%20d9%29.CNhs12897.12631-134F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12631-134F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHbmecCtcfStdPkRep2 HBMEC CTCF Pk 2 narrowPeak HBMEC CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 203 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBMEC CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HBMEC CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3HBMEC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHbmecCtcfStdPkRep2\ type narrowPeak\ wgEncodeHaibTfbsH1hescAtf2sc81188V0422111PkRep1 hESC ATF2 V11 1 broadPeak H1-hESC ATF2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 203 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC ATF2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC ATF2 V11 1\ subGroups view=Peaks factor=ATF2SC81188 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescAtf2sc81188V0422111PkRep1\ type broadPeak\ wgEncodeOpenChromDnaseHuh75Sig Huh-7.5 DS bigWig 0.000000 2.919900 Huh-7.5 DNaseI HS Density Signal from ENCODE/Duke 2 203 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Huh-7.5 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Huh-7.5 DS\ subGroups view=SIG cellType=t3HUH75 treatment=zNONE\ track wgEncodeOpenChromDnaseHuh75Sig\ type bigWig 0.000000 2.919900\ wgEncodeRikenCageHuvecNucleusPamTssHmm HUVE nucl pA- bed 6 HUVEC nucleus polyA- CAGE TSS HMM from ENCODE/RIKEN 3 203 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC nucleus polyA- CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HUVE nucl pA-\ subGroups view=TssHmm cellType=t2HUVEC localization=nucleus rnaExtract=pAM rep=Pooled rank=rankP\ track wgEncodeRikenCageHuvecNucleusPamTssHmm\ type bed 6\ wgEncodeSydhTfbsK562CmycIfng6hStdPk K562 IFg6 cMyc Sd narrowPeak K562 c-Myc Standard IFNg 6hrs ChIP-seq Peaks from ENCODE/SYDH 3 203 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 c-Myc Standard IFNg 6hrs ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFg6 cMyc Sd\ subGroups view=Peaks factor=CMYC cellType=t1K562 control=STD treatment=IFNg6h\ track wgEncodeSydhTfbsK562CmycIfng6hStdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562CjunIfna30UniPk K562+IFNa30 JUN narrowPeak K562 (IFNa30) TFBS Uniform Peaks of c-Jun from ENCODE/Stanford/Analysis 1 203 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNa30) TFBS Uniform Peaks of c-Jun from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNa30 JUN\ subGroups tier=a10 cellType=a10K562 factor=JUN lab=Stanford\ track wgEncodeAwgTfbsSydhK562CjunIfna30UniPk\ wgEncodeCshlShortRnaSeqMcf7CellShorttotalCiptapPlusRep4 MCF7 cell CIP + 2 bigWig 1.000000 10427667.000000 MCF-7 CIP-TAP whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 203 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 CIP-TAP whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel MCF7 cell CIP + 2\ subGroups view=PlusSignal cellType=t2MCF7 localization=CELL protocol=CIPTAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqMcf7CellShorttotalCiptapPlusRep4\ type bigWig 1.000000 10427667.000000\ wgEncodeUwDgfTh2Sig Th2 Sig bigWig 1.000000 47082.000000 Th2 DNaseI DGF Per-base Signal from ENCODE/UW 2 203 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th2 DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel Th2 Sig\ subGroups view=Signal cellType=t3TH02 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh2Sig\ type bigWig 1.000000 47082.000000\ wgEncodeUwHistoneBjH3k36me3StdHotspotsRep2 BJ H3K36M3 Ht 2 broadPeak BJ H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 204 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel BJ H3K36M3 Ht 2\ subGroups view=Hot factor=H3K36ME3 cellType=t3BJ rep=rep2 treatment=zNone\ track wgEncodeUwHistoneBjH3k36me3StdHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqCd20CellPapMinusRep1 CD20 cel pA+ - 1 bigWig 1.000000 115834.000000 CD20+ whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 204 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD20+ whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel CD20 cel pA+ - 1\ subGroups view=MinusSignal cellType=t2BCELLSCD20 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqCd20CellPapMinusRep1\ type bigWig 1.000000 115834.000000\ wgEncodeBroadHistoneCd20CtcfPk CD20+ CTCF broadPeak CD20+ CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 204 0 0 0 127 127 127 1 0 0 regulation 1 longLabel CD20+ CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD20+ CTCF\ subGroups view=Peaks factor=CTCF cellType=t2BCELLSCD20 treatment=zNONE\ track wgEncodeBroadHistoneCd20CtcfPk\ type broadPeak\ encTfChipPkENCFF277VDY GM12878 WRNIP1 narrowPeak Transcription Factor ChIP-seq Peaks of WRNIP1 in GM12878 from ENCODE 3 (ENCFF277VDY) 1 204 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of WRNIP1 in GM12878 from ENCODE 3 (ENCFF277VDY)\ parent encTfChipPk off\ shortLabel GM12878 WRNIP1\ subGroups cellType=GM12878 factor=WRNIP1\ track encTfChipPkENCFF277VDY\ wgEncodeUwDnaseH7esPkRep2 H7h Pk 2 narrowPeak H7-hESC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 204 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel H7h Pk 2\ subGroups view=Peaks cellType=t3H7HESC rep=rep2 treatment=None\ track wgEncodeUwDnaseH7esPkRep2\ type narrowPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_ctss_rev H9MelanocyticInduction_Day09Br1- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_reverse 0 204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep1%20%28H9EB-1%20d9%29.CNhs12897.12631-134F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12631-134F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_tpm_rev H9MelanocyticInduction_Day09Br1- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_reverse 1 204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep1%20%28H9EB-1%20d9%29.CNhs12897.12631-134F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12631-134F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHbmecCtcfStdRawRep2 HBMEC CTCF Sg 2 bigWig 1.000000 8110.000000 HBMEC CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 204 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HBMEC CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HBMEC CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3HBMEC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHbmecCtcfStdRawRep2\ type bigWig 1.000000 8110.000000\ wgEncodeHaibTfbsH1hescAtf2sc81188V0422111RawRep1 hESC ATF2 V11 1 bigWig 0.149202 182.287003 H1-hESC ATF2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 204 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC ATF2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC ATF2 V11 1\ subGroups view=RawSignal factor=ATF2SC81188 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescAtf2sc81188V0422111RawRep1\ type bigWig 0.149202 182.287003\ wgEncodeOpenChromDnaseHuh75BaseOverlapSignal Huh-7.5 OS bigWig 0.000000 286.000000 Huh-7.5 DNaseI HS Overlap Signal from ENCODE/Duke 2 204 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Huh-7.5 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Huh-7.5 OS\ subGroups view=SIGBO cellType=t3HUH75 treatment=zNONE\ track wgEncodeOpenChromDnaseHuh75BaseOverlapSignal\ type bigWig 0.000000 286.000000\ wgEncodeRikenCageHuvecNucleusPamPlusRawRep1 HUVE nucl pA- + 1 bigWig 1.000000 737383.000000 HUVEC nucleus polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 204 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC nucleus polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HUVE nucl pA- + 1\ subGroups view=PlusRawSignal cellType=t2HUVEC localization=nucleus rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageHuvecNucleusPamPlusRawRep1\ type bigWig 1.000000 737383.000000\ wgEncodeSydhTfbsK562CmycIfng6hStdSig K562 IFg6 cMyc Sd bigWig 0.000000 12960.799805 K562 c-Myc Standard IFNg 6hrs ChIP-seq Signal from ENCODE/SYDH 2 204 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 c-Myc Standard IFNg 6hrs ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFg6 cMyc Sd\ subGroups view=Signal factor=CMYC cellType=t1K562 control=STD treatment=IFNg6h\ track wgEncodeSydhTfbsK562CmycIfng6hStdSig\ type bigWig 0.000000 12960.799805\ wgEncodeAwgTfbsSydhK562CjunUniPk K562 JUN narrowPeak K562 TFBS Uniform Peaks of c-Jun from ENCODE/Yale/Analysis 1 204 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of c-Jun from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 JUN\ subGroups tier=a10 cellType=a10K562 factor=JUN lab=Yale\ track wgEncodeAwgTfbsSydhK562CjunUniPk\ wgEncodeCshlShortRnaSeqMcf7CellContigs MCF7 cell C bed 6 MCF-7 whole cell small RNA-seq Contigs from ENCODE/CSHL 2 204 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel MCF7 cell C\ subGroups view=Contigs rep=Pooled cellType=t2MCF7 localization=CELL protocol=NONE rank=none\ track wgEncodeCshlShortRnaSeqMcf7CellContigs\ type bed 6\ wgEncodeUwDgfTh2Raw Th2 Raw bigWig 1.000000 337233.000000 Th2 DNaseI DGF Raw Signal from ENCODE/UW 0 204 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th2 DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel Th2 Raw\ subGroups view=zRaw cellType=t3TH02 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh2Raw\ type bigWig 1.000000 337233.000000\ wgEncodeUwHistoneBjH3k36me3StdPkRep2 BJ H3K36M3 Pk 2 narrowPeak BJ H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 205 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel BJ H3K36M3 Pk 2\ subGroups view=Peaks factor=H3K36ME3 cellType=t3BJ rep=rep2 treatment=zNone\ track wgEncodeUwHistoneBjH3k36me3StdPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqCd20CellPapMinusRep2 CD20 cel pA+ - 2 bigWig 1.000000 198056.000000 CD20+ whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 205 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD20+ whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel CD20 cel pA+ - 2\ subGroups view=MinusSignal cellType=t2BCELLSCD20 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqCd20CellPapMinusRep2\ type bigWig 1.000000 198056.000000\ wgEncodeBroadHistoneCd20CtcfSig CD20+ CTCF bigWig 0.040000 940.359985 CD20+ CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 205 0 0 0 127 127 127 1 0 0 regulation 0 longLabel CD20+ CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD20+ CTCF\ subGroups view=Signal factor=CTCF cellType=t2BCELLSCD20 treatment=zNONE\ track wgEncodeBroadHistoneCd20CtcfSig\ type bigWig 0.040000 940.359985\ encTfChipPkENCFF967ACD GM12878 YY1 1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in GM12878 from ENCODE 3 (ENCFF967ACD) 1 205 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in GM12878 from ENCODE 3 (ENCFF967ACD)\ parent encTfChipPk off\ shortLabel GM12878 YY1 1\ subGroups cellType=GM12878 factor=YY1\ track encTfChipPkENCFF967ACD\ wgEncodeUwDnaseH7esDiffa14dRawRep2 H7h difPA14 Sg 2 bigWig 1.000000 40639.000000 H7-hESC diffProtA 14 d DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 205 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC diffProtA 14 d DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel H7h difPA14 Sg 2\ subGroups view=zRSig cellType=t3H7HESC treatment=DIFFA14D rep=rep2\ track wgEncodeUwDnaseH7esDiffa14dRawRep2\ type bigWig 1.000000 40639.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_ctss_fwd H9MelanocyticInduction_Day09Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_forward 0 205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep2%20%28H9EB-2%20d9%29.CNhs12829.12729-135H2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12729-135H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_tpm_fwd H9MelanocyticInduction_Day09Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_forward 1 205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep2%20%28H9EB-2%20d9%29.CNhs12829.12729-135H2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12729-135H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHbmecInputStdRawRep1 HBMEC In Sg 1 bigWig 1.000000 15288.000000 HBMEC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 205 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HBMEC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HBMEC In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HBMEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHbmecInputStdRawRep1\ type bigWig 1.000000 15288.000000\ wgEncodeHaibTfbsH1hescAtf2sc81188V0422111PkRep2 hESC ATF2 V11 2 broadPeak H1-hESC ATF2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 205 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC ATF2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC ATF2 V11 2\ subGroups view=Peaks factor=ATF2SC81188 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescAtf2sc81188V0422111PkRep2\ type broadPeak\ wgEncodeRikenCageHuvecNucleusPamMinusRawRep1 HUVE nucl pA- - 1 bigWig 1.000000 160349.000000 HUVEC nucleus polyA- CAGE Raw signal - Rep 1 from ENCODE/RIKEN 2 205 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC nucleus polyA- CAGE Raw signal - Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HUVE nucl pA- - 1\ subGroups view=MinusRawSignal cellType=t2HUVEC localization=nucleus rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageHuvecNucleusPamMinusRawRep1\ type bigWig 1.000000 160349.000000\ wgEncodeOpenChromDnaseIpscwru1Pk iPS CWRU1 Pk narrowPeak iPS CWRU1 DNaseI HS Peaks from ENCODE/Duke 3 205 0 0 0 127 127 127 1 0 0 regulation 1 longLabel iPS CWRU1 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel iPS CWRU1 Pk\ subGroups view=Peaks cellType=t3IPSCWRU1 treatment=zNONE\ track wgEncodeOpenChromDnaseIpscwru1Pk\ type narrowPeak\ wgEncodeSydhTfbsK562CmycStdPk K562 cMyc Std narrowPeak K562 c-Myc Standard ChIP-seq Peaks from ENCODE/SYDH 3 205 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 c-Myc Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 cMyc Std\ subGroups view=Peaks factor=CMYC cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562CmycStdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562CjunIfna6hUniPk K562+IFNa6h JUN narrowPeak K562 (IFNa6h) TFBS Uniform Peaks of c-Jun from ENCODE/Yale/Analysis 1 205 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNa6h) TFBS Uniform Peaks of c-Jun from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNa6h JUN\ subGroups tier=a10 cellType=a10K562 factor=JUN lab=Yale\ track wgEncodeAwgTfbsSydhK562CjunIfna6hUniPk\ wgEncodeCshlShortRnaSeqMcf7CellShorttotalMinusRep3 MCF7 cell - 1 bigWig 1.000000 14948869.000000 MCF-7 whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 205 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel MCF7 cell - 1\ subGroups view=MinusSignal cellType=t2MCF7 localization=CELL protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqMcf7CellShorttotalMinusRep3\ type bigWig 1.000000 14948869.000000\ wgEncodeUwDgfTh2wb54553204Hotspots Th2 54553204 Hot broadPeak Th2 Wb54553204 DNaseI DGF Hotspots from ENCODE/UW 0 205 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th2 Wb54553204 DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel Th2 54553204 Hot\ subGroups view=Hotspots cellType=t3TH02WB54553204 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh2wb54553204Hotspots\ type broadPeak\ wgEncodeUwHistoneBjH3k36me3StdRawRep2 BJ H3K36M3 Sg 2 bigWig 1.000000 9722.000000 BJ H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 206 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel BJ H3K36M3 Sg 2\ subGroups view=zRSig factor=H3K36ME3 cellType=t3BJ rep=rep2 treatment=zNone\ track wgEncodeUwHistoneBjH3k36me3StdRawRep2\ type bigWig 1.000000 9722.000000\ wgEncodeCshlLongRnaSeqCd20CellPapPlusRep1 CD20 cel pA+ + 1 bigWig 1.000000 128659.000000 CD20+ whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 206 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD20+ whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel CD20 cel pA+ + 1\ subGroups view=PlusSignal cellType=t2BCELLSCD20 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqCd20CellPapPlusRep1\ type bigWig 1.000000 128659.000000\ wgEncodeBroadHistoneCd20H2azPk CD20+ H2A.Z broadPeak CD20+ H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 206 0 0 0 127 127 127 1 0 0 regulation 1 longLabel CD20+ H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD20+ H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t2BCELLSCD20 treatment=zNONE\ track wgEncodeBroadHistoneCd20H2azPk\ type broadPeak\ encTfChipPkENCFF902HNO GM12878 YY1 2 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in GM12878 from ENCODE 3 (ENCFF902HNO) 1 206 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in GM12878 from ENCODE 3 (ENCFF902HNO)\ parent encTfChipPk off\ shortLabel GM12878 YY1 2\ subGroups cellType=GM12878 factor=YY1\ track encTfChipPkENCFF902HNO\ wgEncodeUwDnaseH7esDiffa5dRawRep2 H7h difPA5 Sg 2 bigWig 1.000000 23171.000000 H7-hESC diffProtA 5 d DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 206 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC diffProtA 5 d DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel H7h difPA5 Sg 2\ subGroups view=zRSig cellType=t3H7HESC treatment=DIFFA5D rep=rep2\ track wgEncodeUwDnaseH7esDiffa5dRawRep2\ type bigWig 1.000000 23171.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_ctss_rev H9MelanocyticInduction_Day09Br2- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_reverse 0 206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep2%20%28H9EB-2%20d9%29.CNhs12829.12729-135H2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12729-135H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_tpm_rev H9MelanocyticInduction_Day09Br2- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_reverse 1 206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep2%20%28H9EB-2%20d9%29.CNhs12829.12729-135H2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12729-135H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHcfInputStdRawRep1 HCF In Sg 1 bigWig 1.000000 19717.000000 HCF Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 206 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCF Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HCF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HCF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHcfInputStdRawRep1\ type bigWig 1.000000 19717.000000\ wgEncodeHaibTfbsH1hescAtf2sc81188V0422111RawRep2 hESC ATF2 V11 2 bigWig 0.135458 124.824997 H1-hESC ATF2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 206 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC ATF2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC ATF2 V11 2\ subGroups view=RawSignal factor=ATF2SC81188 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescAtf2sc81188V0422111RawRep2\ type bigWig 0.135458 124.824997\ wgEncodeRikenCageHuvecNucleusPamAlnRep1 HUVE nucl pA- A 1 bam HUVEC nucleus polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN 0 206 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC nucleus polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HUVE nucl pA- A 1\ subGroups view=Alignments cellType=t2HUVEC localization=nucleus rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageHuvecNucleusPamAlnRep1\ type bam\ wgEncodeOpenChromDnaseIpscwru1Sig iPS CWRU1 DS bigWig 0.000000 1.032700 iPS CWRU1 DNaseI HS Density Signal from ENCODE/Duke 2 206 0 0 0 127 127 127 1 0 0 regulation 0 longLabel iPS CWRU1 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel iPS CWRU1 DS\ subGroups view=SIG cellType=t3IPSCWRU1 treatment=zNONE\ track wgEncodeOpenChromDnaseIpscwru1Sig\ type bigWig 0.000000 1.032700\ wgEncodeSydhTfbsK562CmycStdSig K562 cMyc Std bigWig 0.000000 8692.299805 K562 c-Myc Standard ChIP-seq Signal from ENCODE/SYDH 2 206 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 c-Myc Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 cMyc Std\ subGroups view=Signal factor=CMYC cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562CmycStdSig\ type bigWig 0.000000 8692.299805\ wgEncodeAwgTfbsSydhK562CjunIfng30UniPk K562+IFNg30 JUN narrowPeak K562 (IFNg30) TFBS Uniform Peaks of c-Jun from ENCODE/Yale/Analysis 1 206 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNg30) TFBS Uniform Peaks of c-Jun from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNg30 JUN\ subGroups tier=a10 cellType=a10K562 factor=JUN lab=Yale\ track wgEncodeAwgTfbsSydhK562CjunIfng30UniPk\ wgEncodeCshlShortRnaSeqMcf7CellShorttotalMinusRep4 MCF7 cell - 2 bigWig 1.000000 12942165.000000 MCF-7 whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 206 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel MCF7 cell - 2\ subGroups view=MinusSignal cellType=t2MCF7 localization=CELL protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqMcf7CellShorttotalMinusRep4\ type bigWig 1.000000 12942165.000000\ wgEncodeUwDgfTh2wb54553204Pk Th2 54553204 Pk narrowPeak Th2 Wb54553204 DNaseI DGF Peaks from ENCODE/UW 0 206 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th2 Wb54553204 DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel Th2 54553204 Pk\ subGroups view=Peaks cellType=t3TH02WB54553204 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh2wb54553204Pk\ type narrowPeak\ wgEncodeUwHistoneBjInputStdRawRep1 BJ In Sg 1 bigWig 1.000000 15966.000000 BJ Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 207 0 0 0 127 127 127 0 0 0 regulation 0 longLabel BJ Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel BJ In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3BJ rep=rep1 treatment=zNone\ track wgEncodeUwHistoneBjInputStdRawRep1\ type bigWig 1.000000 15966.000000\ wgEncodeCshlLongRnaSeqCd20CellPapPlusRep2 CD20 cel pA+ + 2 bigWig 1.000000 153183.000000 CD20+ whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 207 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD20+ whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel CD20 cel pA+ + 2\ subGroups view=PlusSignal cellType=t2BCELLSCD20 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqCd20CellPapPlusRep2\ type bigWig 1.000000 153183.000000\ wgEncodeBroadHistoneCd20H2azSig CD20+ H2A.Z bigWig 0.040000 669.520020 CD20+ H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 207 0 0 0 127 127 127 1 0 0 regulation 0 longLabel CD20+ H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD20+ H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t2BCELLSCD20 treatment=zNONE\ track wgEncodeBroadHistoneCd20H2azSig\ type bigWig 0.040000 669.520020\ encTfChipPkENCFF123WEZ GM12878 ZBED1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBED1 in GM12878 from ENCODE 3 (ENCFF123WEZ) 1 207 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ZBED1 in GM12878 from ENCODE 3 (ENCFF123WEZ)\ parent encTfChipPk off\ shortLabel GM12878 ZBED1\ subGroups cellType=GM12878 factor=ZBED1\ track encTfChipPkENCFF123WEZ\ wgEncodeUwDnaseH7esRawRep2 H7h Sg 2 bigWig 1.000000 14083.000000 H7-hESC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 207 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel H7h Sg 2\ subGroups view=zRSig cellType=t3H7HESC rep=rep2 treatment=None\ track wgEncodeUwDnaseH7esRawRep2\ type bigWig 1.000000 14083.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_ctss_fwd H9MelanocyticInduction_Day09Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_forward 0 207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep3%20%28H9EB-3%20d9%29.CNhs12951.12827-137A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12827-137A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_tpm_fwd H9MelanocyticInduction_Day09Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_forward 1 207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep3%20%28H9EB-3%20d9%29.CNhs12951.12827-137A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12827-137A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsHcfaaCtcfStdHotspotsRep1 HCFa CTCF Ht 1 broadPeak HCFaa CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 207 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCFaa CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HCFa CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HCFAA rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHcfaaCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsH1hescAtf3V0416102PkRep1 hESC ATF3 V102 1 broadPeak H1-hESC ATF3 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 207 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC ATF3 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC ATF3 V102 1\ subGroups view=Peaks factor=ATF3 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescAtf3V0416102PkRep1\ type broadPeak\ wgEncodeRikenCageHuvecNucleusPapTssHmm HUVE nucl pA+ bed 6 HUVEC nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 207 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HUVE nucl pA+\ subGroups view=TssHmm cellType=t2HUVEC localization=nucleus rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHuvecNucleusPapTssHmm\ type bed 6\ wgEncodeOpenChromDnaseIpscwru1BaseOverlapSignal iPS CWRU1 OS bigWig 0.000000 264.000000 iPS CWRU1 DNaseI HS Overlap Signal from ENCODE/Duke 2 207 0 0 0 127 127 127 1 0 0 regulation 0 longLabel iPS CWRU1 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel iPS CWRU1 OS\ subGroups view=SIGBO cellType=t3IPSCWRU1 treatment=zNONE\ track wgEncodeOpenChromDnaseIpscwru1BaseOverlapSignal\ type bigWig 0.000000 264.000000\ wgEncodeSydhTfbsK562Corestab24166IggrabPk K562 COREST IgR narrowPeak K562 COREST AB24166 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 207 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 COREST AB24166 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 COREST IgR\ subGroups view=Peaks factor=CORESTAB24166 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Corestab24166IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562CjunIfng6hUniPk K562+IFNg6h JUN narrowPeak K562 (IFNg6h) TFBS Uniform Peaks of c-Jun from ENCODE/Yale/Analysis 1 207 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNg6h) TFBS Uniform Peaks of c-Jun from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNg6h JUN\ subGroups tier=a10 cellType=a10K562 factor=JUN lab=Yale\ track wgEncodeAwgTfbsSydhK562CjunIfng6hUniPk\ wgEncodeCshlShortRnaSeqMcf7CellShorttotalPlusRep3 MCF7 cell + 1 bigWig 1.000000 22266626.000000 MCF-7 whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 207 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel MCF7 cell + 1\ subGroups view=PlusSignal cellType=t2MCF7 localization=CELL protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqMcf7CellShorttotalPlusRep3\ type bigWig 1.000000 22266626.000000\ wgEncodeUwDgfTh2wb54553204Sig Th2 54553204 Sig bigWig 1.000000 59281.000000 Th2 Wb54553204 DNaseI DGF Per-base Signal from ENCODE/UW 2 207 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th2 Wb54553204 DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel Th2 54553204 Sig\ subGroups view=Signal cellType=t3TH02WB54553204 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh2wb54553204Sig\ type bigWig 1.000000 59281.000000\ wgEncodeUwHistoneCaco2H3k4me3StdHotspotsRep1 Caco H3K4M3 Ht 1 broadPeak Caco-2 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 208 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel Caco H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3CACO2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneCd20H3k04me2Pk CD20+ H3K4m2 broadPeak CD20+ H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 208 0 0 0 127 127 127 1 0 0 regulation 1 longLabel CD20+ H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD20+ H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t2BCELLSCD20 treatment=zNONE\ track wgEncodeBroadHistoneCd20H3k04me2Pk\ type broadPeak\ encTfChipPkENCFF394CWJ GM12878 ZBTB33 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in GM12878 from ENCODE 3 (ENCFF394CWJ) 1 208 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in GM12878 from ENCODE 3 (ENCFF394CWJ)\ parent encTfChipPk off\ shortLabel GM12878 ZBTB33 1\ subGroups cellType=GM12878 factor=ZBTB33\ track encTfChipPkENCFF394CWJ\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_ctss_rev H9MelanocyticInduction_Day09Br3- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_reverse 0 208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep3%20%28H9EB-3%20d9%29.CNhs12951.12827-137A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12827-137A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_tpm_rev H9MelanocyticInduction_Day09Br3- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_reverse 1 208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep3%20%28H9EB-3%20d9%29.CNhs12951.12827-137A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12827-137A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHahHotspotsRep1 HAh Ht 1 broadPeak HA-h DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 208 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-h DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HAh Ht 1\ subGroups view=Hot cellType=t3HAAH rep=rep1 treatment=None\ track wgEncodeUwDnaseHahHotspotsRep1\ type broadPeak\ wgEncodeUwTfbsHcfaaCtcfStdPkRep1 HCFa CTCF Pk 1 narrowPeak HCFaa CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 208 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCFaa CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HCFa CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HCFAA rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHcfaaCtcfStdPkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHelas3CellLongnonpolyaAlnRep1 HeS3 cel pA- A 1 bam HeLa-S3 whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 208 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeS3 cel pA- A 1\ subGroups view=Alignments cellType=t2HELAS3 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHelas3CellLongnonpolyaAlnRep1\ type bam\ wgEncodeHaibTfbsH1hescAtf3V0416102RawRep1 hESC ATF3 V102 1 bigWig 0.292899 233.440002 H1-hESC ATF3 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 208 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC ATF3 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC ATF3 V102 1\ subGroups view=RawSignal factor=ATF3 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescAtf3V0416102RawRep1\ type bigWig 0.292899 233.440002\ wgEncodeRikenCageHuvecNucleusPapPlusSignalRep3 HUVE nucl pA+ + 1 bigWig 0.040000 34263.128906 HUVEC nucleus polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN 2 208 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC nucleus polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HUVE nucl pA+ + 1\ subGroups view=PlusRawSignal cellType=t2HUVEC localization=nucleus rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageHuvecNucleusPapPlusSignalRep3\ type bigWig 0.040000 34263.128906\ wgEncodeOpenChromDnaseIpsnihi7Pk iPS NIHi7 Pk narrowPeak iPS NIHi7 DNaseI HS Peaks from ENCODE/Duke 3 208 0 0 0 127 127 127 1 0 0 regulation 1 longLabel iPS NIHi7 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel iPS NIHi7 Pk\ subGroups view=Peaks cellType=t3IPSNIHI07 treatment=zNONE\ track wgEncodeOpenChromDnaseIpsnihi7Pk\ type narrowPeak\ wgEncodeSydhTfbsK562Corestab24166IggrabSig K562 COREST IgR bigWig 1.000000 17236.000000 K562 COREST AB24166 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 208 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 COREST AB24166 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 COREST IgR\ subGroups view=Signal factor=CORESTAB24166 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Corestab24166IggrabSig\ type bigWig 1.000000 17236.000000\ wgEncodeAwgTfbsUchicagoK562EjunbUniPk K562 JUNB narrowPeak K562 TFBS Uniform Peaks of eGFP-JunB from ENCODE/UChicago/Analysis 1 208 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of eGFP-JunB from ENCODE/UChicago/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 JUNB\ subGroups tier=a10 cellType=a10K562 factor=JUNB lab=UChicago\ track wgEncodeAwgTfbsUchicagoK562EjunbUniPk\ wgEncodeCshlShortRnaSeqMcf7CellShorttotalPlusRep4 MCF7 cell + 2 bigWig 1.000000 25658906.000000 MCF-7 whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 208 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel MCF7 cell + 2\ subGroups view=PlusSignal cellType=t2MCF7 localization=CELL protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqMcf7CellShorttotalPlusRep4\ type bigWig 1.000000 25658906.000000\ wgEncodeUwDgfTh2wb54553204Raw Th2 54553204 Raw bigWig 1.000000 263364.000000 Th2 Wb54553204 DNaseI DGF Raw Signal from ENCODE/UW 0 208 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th2 Wb54553204 DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel Th2 54553204 Raw\ subGroups view=zRaw cellType=t3TH02WB54553204 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh2wb54553204Raw\ type bigWig 1.000000 263364.000000\ wgEncodeUwHistoneCaco2H3k4me3StdPkRep1 Caco H3K4M3 Pk 1 narrowPeak Caco-2 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 209 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel Caco H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3CACO2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k4me3StdPkRep1\ type narrowPeak\ wgEncodeBroadHistoneCd20H3k04me2Sig CD20+ H3K4m2 bigWig 0.040000 671.440002 CD20+ H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 209 0 0 0 127 127 127 1 0 0 regulation 0 longLabel CD20+ H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD20+ H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t2BCELLSCD20 treatment=zNONE\ track wgEncodeBroadHistoneCd20H3k04me2Sig\ type bigWig 0.040000 671.440002\ encTfChipPkENCFF539CKD GM12878 ZBTB33 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in GM12878 from ENCODE 3 (ENCFF539CKD) 1 209 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in GM12878 from ENCODE 3 (ENCFF539CKD)\ parent encTfChipPk off\ shortLabel GM12878 ZBTB33 2\ subGroups cellType=GM12878 factor=ZBTB33\ track encTfChipPkENCFF539CKD\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_ctss_fwd H9MelanocyticInduction_Day12Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_forward 0 209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12948.12632-134F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_tpm_fwd H9MelanocyticInduction_Day12Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_forward 1 209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12948.12632-134F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHahPkRep1 HAh Pk 1 narrowPeak HA-h DNaseI HS Peaks Rep 1 from ENCODE/UW 1 209 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-h DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HAh Pk 1\ subGroups view=Peaks cellType=t3HAAH rep=rep1 treatment=None\ track wgEncodeUwDnaseHahPkRep1\ type narrowPeak\ wgEncodeUwTfbsHcfaaCtcfStdRawRep1 HCFa CTCF Sg 1 bigWig 1.000000 8603.000000 HCFaa CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 209 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCFaa CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HCFa CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HCFAA rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHcfaaCtcfStdRawRep1\ type bigWig 1.000000 8603.000000\ wgEncodeCshlLongRnaSeqHelas3CellLongnonpolyaAlnRep2 HeS3 cel pA- A 2 bam HeLa-S3 whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 209 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeS3 cel pA- A 2\ subGroups view=Alignments cellType=t2HELAS3 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3CellLongnonpolyaAlnRep2\ type bam\ wgEncodeHaibTfbsH1hescAtf3V0416102PkRep2 hESC ATF3 V102 2 broadPeak H1-hESC ATF3 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 209 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC ATF3 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC ATF3 V102 2\ subGroups view=Peaks factor=ATF3 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescAtf3V0416102PkRep2\ type broadPeak\ wgEncodeRikenCageHuvecNucleusPapPlusSignalRep4 HUVE nucl pA+ + 2 bigWig 0.040000 26760.609375 HUVEC nucleus polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN 2 209 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC nucleus polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HUVE nucl pA+ + 2\ subGroups view=PlusRawSignal cellType=t2HUVEC localization=nucleus rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageHuvecNucleusPapPlusSignalRep4\ type bigWig 0.040000 26760.609375\ wgEncodeOpenChromDnaseIpsnihi7Sig iPS NIHi7 DS bigWig 0.000000 0.476200 iPS NIHi7 DNaseI HS Density Signal from ENCODE/Duke 2 209 0 0 0 127 127 127 1 0 0 regulation 0 longLabel iPS NIHi7 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel iPS NIHi7 DS\ subGroups view=SIG cellType=t3IPSNIHI07 treatment=zNONE\ track wgEncodeOpenChromDnaseIpsnihi7Sig\ type bigWig 0.000000 0.476200\ wgEncodeSydhTfbsK562Corestsc30189IggrabPk K562 COREST IgR narrowPeak K562 COREST SC30189 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 209 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 COREST SC30189 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 COREST IgR\ subGroups view=Peaks factor=CORESTSC30189 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Corestsc30189IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562JundIggrabUniPk K562 JUND s narrowPeak K562 TFBS Uniform Peaks of JunD from ENCODE/Stanford/Analysis 1 209 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of JunD from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 JUND s\ subGroups tier=a10 cellType=a10K562 factor=JUND lab=Stanford\ track wgEncodeAwgTfbsSydhK562JundIggrabUniPk\ wgEncodeCshlShortRnaSeqMcf7CellTapContigsV2 MCF7 cell TAP C bed 6 MCF-7 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 209 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel MCF7 cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t2MCF7 localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqMcf7CellTapContigsV2\ type bed 6\ wgEncodeUwDgfTh17Hotspots Th17 Hot broadPeak Th17 DNaseI DGF Hotspots from ENCODE/UW 0 209 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th17 DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel Th17 Hot\ subGroups view=Hotspots cellType=t3TH17 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh17Hotspots\ type broadPeak\ wgEncodeUwHistoneCaco2H3k4me3StdRawRep1 Caco H3K4M3 Sg 1 bigWig 1.000000 1551.000000 Caco-2 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 210 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Caco-2 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel Caco H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3CACO2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k4me3StdRawRep1\ type bigWig 1.000000 1551.000000\ wgEncodeBroadHistoneCd20ControlSig CD20+ Control bigWig 0.040000 796.799988 CD20+ Control Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 210 0 0 0 127 127 127 1 0 0 regulation 0 longLabel CD20+ Control Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD20+ Control\ subGroups view=Signal factor=zCTRL cellType=t2BCELLSCD20 treatment=zNONE\ track wgEncodeBroadHistoneCd20ControlSig\ type bigWig 0.040000 796.799988\ encTfChipPkENCFF357WYN GM12878 ZBTB40 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB40 in GM12878 from ENCODE 3 (ENCFF357WYN) 1 210 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB40 in GM12878 from ENCODE 3 (ENCFF357WYN)\ parent encTfChipPk off\ shortLabel GM12878 ZBTB40\ subGroups cellType=GM12878 factor=ZBTB40\ track encTfChipPkENCFF357WYN\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_ctss_fwd H9MelanocyticInduction_Day12Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_forward 0 210 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12994.12632-134F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_tpm_fwd H9MelanocyticInduction_Day12Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_forward 1 210 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12994.12632-134F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHahRawRep1 HAh Sg 1 bigWig 1.000000 28721.000000 HA-h DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 210 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HA-h DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HAh Sg 1\ subGroups view=zRSig cellType=t3HAAH rep=rep1 treatment=None\ track wgEncodeUwDnaseHahRawRep1\ type bigWig 1.000000 28721.000000\ wgEncodeUwTfbsHcfaaInputStdRawRep1 HCFa In Sg 1 bigWig 1.000000 16198.000000 HCFaa Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 210 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCFaa Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HCFa In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HCFAA rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHcfaaInputStdRawRep1\ type bigWig 1.000000 16198.000000\ wgEncodeCshlLongRnaSeqHelas3CellPamContigs HeS3 cel pA- C bed 6 + HeLa-S3 whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 210 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HeS3 cel pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HELAS3 localization=CELL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqHelas3CellPamContigs\ type bed 6 +\ wgEncodeHaibTfbsH1hescAtf3V0416102RawRep2 hESC ATF3 V102 2 bigWig 0.396324 225.013000 H1-hESC ATF3 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 210 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC ATF3 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC ATF3 V102 2\ subGroups view=RawSignal factor=ATF3 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescAtf3V0416102RawRep2\ type bigWig 0.396324 225.013000\ wgEncodeRikenCageHuvecNucleusPapMinusSignalRep3 HUVE nucl pA+ - 1 bigWig 0.040000 5482.290039 HUVEC nucleus polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN 2 210 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC nucleus polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HUVE nucl pA+ - 1\ subGroups view=MinusRawSignal cellType=t2HUVEC localization=nucleus rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageHuvecNucleusPapMinusSignalRep3\ type bigWig 0.040000 5482.290039\ wgEncodeOpenChromDnaseIpsnihi7BaseOverlapSignal iPS NIHi7 OS bigWig 0.000000 319.000000 iPS NIHi7 DNaseI HS Overlap Signal from ENCODE/Duke 2 210 0 0 0 127 127 127 1 0 0 regulation 0 longLabel iPS NIHi7 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel iPS NIHi7 OS\ subGroups view=SIGBO cellType=t3IPSNIHI07 treatment=zNONE\ track wgEncodeOpenChromDnaseIpsnihi7BaseOverlapSignal\ type bigWig 0.000000 319.000000\ wgEncodeSydhTfbsK562Corestsc30189IggrabSig K562 COREST IgR bigWig 1.000000 8974.000000 K562 COREST SC30189 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 210 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 COREST SC30189 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 COREST IgR\ subGroups view=Signal factor=CORESTSC30189 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Corestsc30189IggrabSig\ type bigWig 1.000000 8974.000000\ wgEncodeAwgTfbsUchicagoK562EjundUniPk K562 JUND i narrowPeak K562 TFBS Uniform Peaks of eGFP-JunD from ENCODE/UChicago/Analysis 1 210 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of eGFP-JunD from ENCODE/UChicago/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 JUND i\ subGroups tier=a10 cellType=a10K562 factor=JUND lab=UChicago\ track wgEncodeAwgTfbsUchicagoK562EjundUniPk\ wgEncodeCshlShortRnaSeqMcf7CellShorttotalTapMinusRep1V2 MCF7 cell TAP - 1 bigWig 1.000000 16735774.000000 MCF-7 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 210 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel MCF7 cell TAP - 1\ subGroups view=MinusSignal cellType=t2MCF7 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqMcf7CellShorttotalTapMinusRep1V2\ type bigWig 1.000000 16735774.000000\ wgEncodeUwDgfTh17Pk Th17 Pk narrowPeak Th17 DNaseI DGF Peaks from ENCODE/UW 0 210 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th17 DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel Th17 Pk\ subGroups view=Peaks cellType=t3TH17 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh17Pk\ type narrowPeak\ wgEncodeUwHistoneCaco2H3k4me3StdHotspotsRep2 Caco H3K4M3 Ht 2 broadPeak Caco-2 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 211 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel Caco H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3CACO2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneCd20ro01794Ezh239875Pk CD20+ EZH2 broadPeak CD20+ RO01794 EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 211 0 0 0 127 127 127 1 0 0 regulation 1 longLabel CD20+ RO01794 EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD20+ EZH2\ subGroups view=Peaks factor=EZH239875 cellType=t2BCELLSCD20RO01794 treatment=zNONE\ track wgEncodeBroadHistoneCd20ro01794Ezh239875Pk\ type broadPeak\ encTfChipPkENCFF544NXC GM12878 ZNF143 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF143 in GM12878 from ENCODE 3 (ENCFF544NXC) 1 211 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ZNF143 in GM12878 from ENCODE 3 (ENCFF544NXC)\ parent encTfChipPk off\ shortLabel GM12878 ZNF143 1\ subGroups cellType=GM12878 factor=ZNF143\ track encTfChipPkENCFF544NXC\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_ctss_rev H9MelanocyticInduction_Day12Br1- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_reverse 0 211 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12948.12632-134F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_tpm_rev H9MelanocyticInduction_Day12Br1- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_reverse 1 211 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12948.12632-134F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHahHotspotsRep2 HAh Ht 2 broadPeak HA-h DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 211 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-h DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HAh Ht 2\ subGroups view=Hot cellType=t3HAAH rep=rep2 treatment=None\ track wgEncodeUwDnaseHahHotspotsRep2\ type broadPeak\ wgEncodeUwTfbsHcmCtcfStdHotspotsRep1 HCM CTCF Ht 1 broadPeak HCM CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 211 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel HCM CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HCM rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHcmCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3CellPamJunctions HeS3 cel pA- J bed 6 + HeLa-S3 whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 211 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HeS3 cel pA- J\ subGroups view=Junctions cellType=t2HELAS3 localization=CELL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHelas3CellPamJunctions\ type bed 6 +\ wgEncodeHaibTfbsH1hescBcl11aPcr1xPkRep1 hESC BCL PCR1 1 broadPeak H1-hESC BCL11A PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 211 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC BCL11A PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC BCL PCR1 1\ subGroups view=Peaks factor=BCL11A cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescBcl11aPcr1xPkRep1\ type broadPeak\ wgEncodeRikenCageHuvecNucleusPapMinusSignalRep4 HUVE nucl pA+ - 2 bigWig 0.040000 5541.009766 HUVEC nucleus polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN 2 211 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC nucleus polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HUVE nucl pA+ - 2\ subGroups view=MinusRawSignal cellType=t2HUVEC localization=nucleus rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageHuvecNucleusPapMinusSignalRep4\ type bigWig 0.040000 5541.009766\ wgEncodeOpenChromDnaseIpsnihi11Pk iPS NIHi11 Pk narrowPeak iPS NIHi11 DNaseI HS Peaks from ENCODE/Duke 3 211 0 0 0 127 127 127 1 0 0 regulation 1 longLabel iPS NIHi11 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel iPS NIHi11 Pk\ subGroups view=Peaks cellType=t3IPSNIHI11 treatment=zNONE\ track wgEncodeOpenChromDnaseIpsnihi11Pk\ type narrowPeak\ wgEncodeSydhTfbsK562CtcfbIggrabPk K562 CTCF IgR narrowPeak K562 CTCF IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 211 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CTCF IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 CTCF IgR\ subGroups view=Peaks factor=CTCFb cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562CtcfbIggrabPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Kap1UcdUniPk K562 KAP1 narrowPeak K562 TFBS Uniform Peaks of KAP1 from ENCODE/USC/Analysis 1 211 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of KAP1 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 KAP1\ subGroups tier=a10 cellType=a10K562 factor=KAP1 lab=USC\ track wgEncodeAwgTfbsSydhK562Kap1UcdUniPk\ wgEncodeCshlShortRnaSeqMcf7CellShorttotalTapMinusRep2V2 MCF7 cell TAP - 2 bigWig 1.000000 12171585.000000 MCF-7 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 211 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel MCF7 cell TAP - 2\ subGroups view=MinusSignal cellType=t2MCF7 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqMcf7CellShorttotalTapMinusRep2V2\ type bigWig 1.000000 12171585.000000\ wgEncodeUwDgfTh17Sig Th17 Sig bigWig 1.000000 19243.000000 Th17 DNaseI DGF Per-base Signal from ENCODE/UW 2 211 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th17 DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel Th17 Sig\ subGroups view=Signal cellType=t3TH17 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh17Sig\ type bigWig 1.000000 19243.000000\ wgEncodeUwHistoneCaco2H3k4me3StdPkRep2 Caco H3K4M3 Pk 2 narrowPeak Caco-2 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 212 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel Caco H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3CACO2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k4me3StdPkRep2\ type narrowPeak\ wgEncodeBroadHistoneCd20ro01794Ezh239875Sig CD20+ EZH2 bigWig 0.040000 713.000000 CD20+ RO01794 EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 212 0 0 0 127 127 127 1 0 0 regulation 0 longLabel CD20+ RO01794 EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD20+ EZH2\ subGroups view=Signal factor=EZH239875 cellType=t2BCELLSCD20RO01794 treatment=zNONE\ track wgEncodeBroadHistoneCd20ro01794Ezh239875Sig\ type bigWig 0.040000 713.000000\ encTfChipPkENCFF141SAU GM12878 ZNF143 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF143 in GM12878 from ENCODE 3 (ENCFF141SAU) 1 212 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ZNF143 in GM12878 from ENCODE 3 (ENCFF141SAU)\ parent encTfChipPk off\ shortLabel GM12878 ZNF143 2\ subGroups cellType=GM12878 factor=ZNF143\ track encTfChipPkENCFF141SAU\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_ctss_rev H9MelanocyticInduction_Day12Br1- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_reverse 0 212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12994.12632-134F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_tpm_rev H9MelanocyticInduction_Day12Br1- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_reverse 1 212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12994.12632-134F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHahPkRep2 HAh Pk 2 narrowPeak HA-h DNaseI HS Peaks Rep 2 from ENCODE/UW 1 212 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-h DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HAh Pk 2\ subGroups view=Peaks cellType=t3HAAH rep=rep2 treatment=None\ track wgEncodeUwDnaseHahPkRep2\ type narrowPeak\ wgEncodeUwTfbsHcmCtcfStdPkRep1 HCM CTCF Pk 1 narrowPeak HCM CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 212 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HCM CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HCM rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHcmCtcfStdPkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHelas3CellLongnonpolyaMinusRawSigRep1 HeS3 cel pA- - 1 bigWig 1.000000 580980.000000 HeLa-S3 whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 212 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeS3 cel pA- - 1\ subGroups view=MinusSignal cellType=t2HELAS3 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHelas3CellLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 580980.000000\ wgEncodeHaibTfbsH1hescBcl11aPcr1xRawRep1 hESC BCL11A 1 bigWig 0.258894 318.244995 H1-hESC BCL11A PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 212 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC BCL11A PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC BCL11A 1\ subGroups view=RawSignal factor=BCL11A cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescBcl11aPcr1xRawRep1\ type bigWig 0.258894 318.244995\ wgEncodeRikenCageHuvecNucleusPapAlnRep3 HUVE nucl pA+ A 1 bam HUVEC nucleus polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN 0 212 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC nucleus polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HUVE nucl pA+ A 1\ subGroups view=Alignments cellType=t2HUVEC localization=nucleus rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageHuvecNucleusPapAlnRep3\ type bam\ wgEncodeOpenChromDnaseIpsnihi11Sig iPS NIHi11 DS bigWig 0.000000 0.824900 iPS NIHi11 DNaseI HS Density Signal from ENCODE/Duke 2 212 0 0 0 127 127 127 1 0 0 regulation 0 longLabel iPS NIHi11 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel iPS NIHi11 DS\ subGroups view=SIG cellType=t3IPSNIHI11 treatment=zNONE\ track wgEncodeOpenChromDnaseIpsnihi11Sig\ type bigWig 0.000000 0.824900\ wgEncodeSydhTfbsK562CtcfbIggrabSig K562 CTCF IgR bigWig 1.000000 23782.000000 K562 CTCF IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 212 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CTCF IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 CTCF IgR\ subGroups view=Signal factor=CTCFb cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562CtcfbIggrabSig\ type bigWig 1.000000 23782.000000\ wgEncodeAwgTfbsBroadK562Plu1UniPk K562 KDM5B narrowPeak K562 TFBS Uniform Peaks of PLU1 from ENCODE/Broad/Analysis 1 212 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of PLU1 from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 KDM5B\ subGroups tier=a10 cellType=a10K562 factor=KDM5B lab=Broad\ track wgEncodeAwgTfbsBroadK562Plu1UniPk\ wgEncodeCshlShortRnaSeqMcf7CellShorttotalTapPlusRep1V2 MCF7 cell TAP + 1 bigWig 1.000000 10828348.000000 MCF-7 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 212 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel MCF7 cell TAP + 1\ subGroups view=PlusSignal cellType=t2MCF7 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqMcf7CellShorttotalTapPlusRep1V2\ type bigWig 1.000000 10828348.000000\ wgEncodeUwDgfTh17Raw Th17 Raw bigWig 1.000000 139611.000000 Th17 DNaseI DGF Raw Signal from ENCODE/UW 0 212 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th17 DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel Th17 Raw\ subGroups view=zRaw cellType=t3TH17 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTh17Raw\ type bigWig 1.000000 139611.000000\ wgEncodeUwHistoneCaco2H3k4me3StdRawRep2 Caco H3K4M3 Sg 2 bigWig 1.000000 2008.000000 Caco-2 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 213 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Caco-2 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel Caco H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3CACO2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k4me3StdRawRep2\ type bigWig 1.000000 2008.000000\ wgEncodeBroadHistoneCd20ro01794H3k27acPk CD20+ H3K27ac broadPeak CD20+ RO01794 H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 213 0 0 0 127 127 127 1 0 0 regulation 1 longLabel CD20+ RO01794 H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD20+ H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t2BCELLSCD20RO01794 treatment=zNONE\ track wgEncodeBroadHistoneCd20ro01794H3k27acPk\ type broadPeak\ encTfChipPkENCFF273BVT GM12878 ZNF207 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF207 in GM12878 from ENCODE 3 (ENCFF273BVT) 1 213 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ZNF207 in GM12878 from ENCODE 3 (ENCFF273BVT)\ parent encTfChipPk off\ shortLabel GM12878 ZNF207\ subGroups cellType=GM12878 factor=ZNF207\ track encTfChipPkENCFF273BVT\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_ctss_fwd H9MelanocyticInduction_Day12Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_forward 0 213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep2%20%28H9EB-2%20d12%29.CNhs12830.12730-135H3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12730-135H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_tpm_fwd H9MelanocyticInduction_Day12Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_forward 1 213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep2%20%28H9EB-2%20d12%29.CNhs12830.12730-135H3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12730-135H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHahRawRep2 HAh Sg 2 bigWig 1.000000 23686.000000 HA-h DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 213 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HA-h DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HAh Sg 2\ subGroups view=zRSig cellType=t3HAAH rep=rep2 treatment=None\ track wgEncodeUwDnaseHahRawRep2\ type bigWig 1.000000 23686.000000\ wgEncodeUwTfbsHcmCtcfStdRawRep1 HCM CTCF Sg 1 bigWig 1.000000 7615.000000 HCM CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 213 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCM CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HCM CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HCM rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHcmCtcfStdRawRep1\ type bigWig 1.000000 7615.000000\ wgEncodeCshlLongRnaSeqHelas3CellLongnonpolyaMinusRawSigRep2 HeS3 cel pA- - 2 bigWig 1.000000 1171222.000000 HeLa-S3 whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 213 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeS3 cel pA- - 2\ subGroups view=MinusSignal cellType=t2HELAS3 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3CellLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 1171222.000000\ wgEncodeHaibTfbsH1hescBcl11aV0416102PkRep2 hESC BCL V102 2 broadPeak H1-hESC BCL11A v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 213 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC BCL11A v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC BCL V102 2\ subGroups view=Peaks factor=BCL11A cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescBcl11aV0416102PkRep2\ type broadPeak\ wgEncodeRikenCageHuvecNucleusPapAlnRep4 HUVE nucl pA+ A 2 bam HUVEC nucleus polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN 0 213 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC nucleus polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HUVE nucl pA+ A 2\ subGroups view=Alignments cellType=t2HUVEC localization=nucleus rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageHuvecNucleusPapAlnRep4\ type bam\ wgEncodeOpenChromDnaseIpsnihi11BaseOverlapSignal iPS NIHi11 OS bigWig 0.000000 385.000000 iPS NIHi11 DNaseI HS Overlap Signal from ENCODE/Duke 2 213 0 0 0 127 127 127 1 0 0 regulation 0 longLabel iPS NIHi11 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel iPS NIHi11 OS\ subGroups view=SIGBO cellType=t3IPSNIHI11 treatment=zNONE\ track wgEncodeOpenChromDnaseIpsnihi11BaseOverlapSignal\ type bigWig 0.000000 385.000000\ wgEncodeSydhTfbsK562E2f4UcdPk K562 E2F4 UCD narrowPeak K562 E2F4 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 213 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 E2F4 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 E2F4 UCD\ subGroups view=Peaks factor=E2F4 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562E2f4UcdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562MaffIggrabUniPk K562 MAFF narrowPeak K562 TFBS Uniform Peaks of MafF_(M8194) from ENCODE/Stanford/Analysis 1 213 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of MafF_(M8194) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 MAFF\ subGroups tier=a10 cellType=a10K562 factor=MAFF lab=Stanford\ track wgEncodeAwgTfbsSydhK562MaffIggrabUniPk\ wgEncodeCshlShortRnaSeqMcf7CellShorttotalTapPlusRep2V2 MCF7 cell TAP + 2 bigWig 1.000000 10482101.000000 MCF-7 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 213 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel MCF7 cell TAP + 2\ subGroups view=PlusSignal cellType=t2MCF7 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqMcf7CellShorttotalTapPlusRep2V2\ type bigWig 1.000000 10482101.000000\ wgEncodeUwDgfTregwb78495824Hotspots Treg Hot broadPeak Treg Wb78495824 DNaseI DGF Hotspots from ENCODE/UW 0 213 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Treg Wb78495824 DNaseI DGF Hotspots from ENCODE/UW\ parent wgEncodeUwDgfViewHotspots off\ shortLabel Treg Hot\ subGroups view=Hotspots cellType=t3TREGWB78495824 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTregwb78495824Hotspots\ type broadPeak\ wgEncodeUwHistoneCaco2H3k27me3StdHotspotsRep1 Caco H3K27M3 Ht 1 broadPeak Caco-2 H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 214 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel Caco H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t3CACO2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k27me3StdHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneCd20ro01794H3k27acSig CD20+ H3K27ac bigWig 0.040000 769.840027 CD20+ RO01794 H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 214 0 0 0 127 127 127 1 0 0 regulation 0 longLabel CD20+ RO01794 H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD20+ H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t2BCELLSCD20RO01794 treatment=zNONE\ track wgEncodeBroadHistoneCd20ro01794H3k27acSig\ type bigWig 0.040000 769.840027\ encTfChipPkENCFF513RIQ GM12878 ZNF217 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF217 in GM12878 from ENCODE 3 (ENCFF513RIQ) 1 214 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ZNF217 in GM12878 from ENCODE 3 (ENCFF513RIQ)\ parent encTfChipPk off\ shortLabel GM12878 ZNF217\ subGroups cellType=GM12878 factor=ZNF217\ track encTfChipPkENCFF513RIQ\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_ctss_rev H9MelanocyticInduction_Day12Br2- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_reverse 0 214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep2%20%28H9EB-2%20d12%29.CNhs12830.12730-135H3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12730-135H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_tpm_rev H9MelanocyticInduction_Day12Br2- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_reverse 1 214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep2%20%28H9EB-2%20d12%29.CNhs12830.12730-135H3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12730-135H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHaspHotspotsRep1 HAsp Ht 1 broadPeak HA-sp DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 214 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-sp DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HAsp Ht 1\ subGroups view=Hot cellType=t3HAASP rep=rep1 treatment=None\ track wgEncodeUwDnaseHaspHotspotsRep1\ type broadPeak\ wgEncodeUwTfbsHcmCtcfStdHotspotsRep2 HCM CTCF Ht 2 broadPeak HCM CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 214 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel HCM CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3HCM rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHcmCtcfStdHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3CellLongnonpolyaPlusRawSigRep1 HeS3 cel pA- + 1 bigWig 1.000000 920085.000000 HeLa-S3 whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 214 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeS3 cel pA- + 1\ subGroups view=PlusSignal cellType=t2HELAS3 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHelas3CellLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 920085.000000\ wgEncodeHaibTfbsH1hescBcl11aV0416102RawRep2 hESC BCL V102 2 bigWig 0.285161 239.250000 H1-hESC BCL11A v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 214 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC BCL11A v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC BCL V102 2\ subGroups view=RawSignal factor=BCL11A cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescBcl11aV0416102RawRep2\ type bigWig 0.285161 239.250000\ wgEncodeRikenCageHuvecCellPapTssHmm HUVE cell pA+ bed 6 HUVEC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 214 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HUVE cell pA+\ subGroups view=TssHmm cellType=t2HUVEC localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHuvecCellPapTssHmm\ type bed 6\ wgEncodeOpenChromDnaseIshikawaTam10030Pk Ishi OHTAM Pk narrowPeak Ishikawa 4-OHTAM 100 nM 30 m DNaseI HS Peaks from ENCODE/Duke 3 214 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Ishikawa 4-OHTAM 100 nM 30 m DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Ishi OHTAM Pk\ subGroups view=Peaks cellType=t3ISHIKAWA treatment=A4TAM10030\ track wgEncodeOpenChromDnaseIshikawaTam10030Pk\ type narrowPeak\ wgEncodeSydhTfbsK562E2f4UcdSig K562 E2F4 UCD bigWig 0.000000 7453.899902 K562 E2F4 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 214 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 E2F4 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 E2F4 UCD\ subGroups view=Signal factor=E2F4 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562E2f4UcdSig\ type bigWig 0.000000 7453.899902\ wgEncodeAwgTfbsSydhK562Mafkab50322IggrabUniPk K562 MAFK narrowPeak K562 TFBS Uniform Peaks of MafK_(ab50322) from ENCODE/Stanford/Analysis 1 214 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of MafK_(ab50322) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 MAFK\ subGroups tier=a10 cellType=a10K562 factor=MAFK lab=Stanford\ track wgEncodeAwgTfbsSydhK562Mafkab50322IggrabUniPk\ wgEncodeCshlShortRnaSeqMcf7CytosolContigs MCF7 cyto C bed 6 MCF-7 cytosol small RNA-seq Contigs from ENCODE/CSHL 2 214 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 cytosol small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel MCF7 cyto C\ subGroups view=Contigs rep=Pooled cellType=t2MCF7 localization=CYTOSOL protocol=NONE rank=none\ track wgEncodeCshlShortRnaSeqMcf7CytosolContigs\ type bed 6\ wgEncodeUwDgfTregwb78495824Pk Treg Pk narrowPeak Treg Wb78495824 DNaseI DGF Peaks from ENCODE/UW 0 214 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Treg Wb78495824 DNaseI DGF Peaks from ENCODE/UW\ parent wgEncodeUwDgfViewPeaks off\ shortLabel Treg Pk\ subGroups view=Peaks cellType=t3TREGWB78495824 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTregwb78495824Pk\ type narrowPeak\ wgEncodeUwHistoneCaco2H3k27me3StdPkRep1 Caco H3K27M3 Pk 1 narrowPeak Caco-2 H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 215 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel Caco H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t3CACO2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k27me3StdPkRep1\ type narrowPeak\ wgEncodeBroadHistoneCd20ro01794H4k20me1Pk CD20+ H4K20m1 broadPeak CD20+ RO01794 H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 215 0 0 0 127 127 127 1 0 0 regulation 1 longLabel CD20+ RO01794 H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD20+ H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t2BCELLSCD20RO01794 treatment=zNONE\ track wgEncodeBroadHistoneCd20ro01794H4k20me1Pk\ type broadPeak\ encTfChipPkENCFF103OOV GM12878 ZNF24 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in GM12878 from ENCODE 3 (ENCFF103OOV) 1 215 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in GM12878 from ENCODE 3 (ENCFF103OOV)\ parent encTfChipPk off\ shortLabel GM12878 ZNF24\ subGroups cellType=GM12878 factor=ZNF24\ track encTfChipPkENCFF103OOV\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_ctss_fwd H9MelanocyticInduction_Day12Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_forward 0 215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12949.12828-137A2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_tpm_fwd H9MelanocyticInduction_Day12Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_forward 1 215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12949.12828-137A2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHaspPkRep1 HAsp Pk 1 narrowPeak HA-sp DNaseI HS Peaks Rep 1 from ENCODE/UW 1 215 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-sp DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HAsp Pk 1\ subGroups view=Peaks cellType=t3HAASP rep=rep1 treatment=None\ track wgEncodeUwDnaseHaspPkRep1\ type narrowPeak\ wgEncodeUwTfbsHcmCtcfStdPkRep2 HCM CTCF Pk 2 narrowPeak HCM CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 215 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HCM CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3HCM rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHcmCtcfStdPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHelas3CellLongnonpolyaPlusRawSigRep2 HeS3 cel pA- + 2 bigWig 1.000000 2383328.000000 HeLa-S3 whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 215 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeS3 cel pA- + 2\ subGroups view=PlusSignal cellType=t2HELAS3 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3CellLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 2383328.000000\ wgEncodeHaibTfbsH1hescCreb1sc240V0422111PkRep1 hESC CREB1 V11 1 broadPeak H1-hESC CREB1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 215 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC CREB1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC CREB1 V11 1\ subGroups view=Peaks factor=CREB1SC240 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescCreb1sc240V0422111PkRep1\ type broadPeak\ wgEncodeRikenCageHuvecCellPapPlusSignalRep1 HUVE cell pA+ + 1 bigWig 0.040000 11292.700195 HUVEC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 215 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HUVE cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t2HUVEC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHuvecCellPapPlusSignalRep1\ type bigWig 0.040000 11292.700195\ wgEncodeOpenChromDnaseIshikawaTam10030Sig Ishi OHTAM DS bigWig 0.000000 1.095400 Ishikawa 4-OHTAM 100 nM 30 m DNaseI HS Density Signal from ENCODE/Duke 2 215 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Ishikawa 4-OHTAM 100 nM 30 m DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Ishi OHTAM DS\ subGroups view=SIG cellType=t3ISHIKAWA treatment=A4TAM10030\ track wgEncodeOpenChromDnaseIshikawaTam10030Sig\ type bigWig 0.000000 1.095400\ wgEncodeSydhTfbsK562E2f6UcdPk K562 E2F6 UCD narrowPeak K562 E2F6 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 215 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 E2F6 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 E2F6 UCD\ subGroups view=Peaks factor=E2F6 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562E2f6UcdPk\ type narrowPeak\ wgEncodeAwgTfbsHaibK562MaxV0416102UniPk K562 MAX h narrowPeak K562 TFBS Uniform Peaks of Max from ENCODE/HudsonAlpha/Analysis 1 215 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Max from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 MAX h\ subGroups tier=a10 cellType=a10K562 factor=MAX lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562MaxV0416102UniPk\ wgEncodeCshlShortRnaSeqMcf7CytosolShorttotalMinusRep3 MCF7 cyto - 1 bigWig 1.000000 11094548.000000 MCF-7 cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 215 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel MCF7 cyto - 1\ subGroups view=MinusSignal cellType=t2MCF7 localization=CYTOSOL protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqMcf7CytosolShorttotalMinusRep3\ type bigWig 1.000000 11094548.000000\ wgEncodeUwDgfTregwb78495824Sig Treg Sig bigWig 1.000000 25769.000000 Treg Wb78495824 DNaseI DGF Per-base Signal from ENCODE/UW 2 215 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Treg Wb78495824 DNaseI DGF Per-base Signal from ENCODE/UW\ parent wgEncodeUwDgfViewSignal off\ shortLabel Treg Sig\ subGroups view=Signal cellType=t3TREGWB78495824 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTregwb78495824Sig\ type bigWig 1.000000 25769.000000\ wgEncodeUwHistoneCaco2H3k27me3StdRawRep1 Caco H3K27M3 Sg 1 bigWig 1.000000 8131.000000 Caco-2 H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 216 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Caco-2 H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel Caco H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t3CACO2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k27me3StdRawRep1\ type bigWig 1.000000 8131.000000\ wgEncodeBroadHistoneCd20ro01794H4k20me1Sig CD20+ H4K20m1 bigWig 0.040000 715.119995 CD20+ RO01794 H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 216 0 0 0 127 127 127 1 0 0 regulation 0 longLabel CD20+ RO01794 H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD20+ H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t2BCELLSCD20RO01794 treatment=zNONE\ track wgEncodeBroadHistoneCd20ro01794H4k20me1Sig\ type bigWig 0.040000 715.119995\ encTfChipPkENCFF371OGO GM12878 ZNF384 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF384 in GM12878 from ENCODE 3 (ENCFF371OGO) 1 216 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ZNF384 in GM12878 from ENCODE 3 (ENCFF371OGO)\ parent encTfChipPk off\ shortLabel GM12878 ZNF384\ subGroups cellType=GM12878 factor=ZNF384\ track encTfChipPkENCFF371OGO\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_ctss_fwd H9MelanocyticInduction_Day12Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_forward 0 216 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12995.12828-137A2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_tpm_fwd H9MelanocyticInduction_Day12Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_forward 1 216 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12995.12828-137A2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHaspRawRep1 HAsp Sg 1 bigWig 1.000000 48880.000000 HA-sp DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 216 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HA-sp DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HAsp Sg 1\ subGroups view=zRSig cellType=t3HAASP rep=rep1 treatment=None\ track wgEncodeUwDnaseHaspRawRep1\ type bigWig 1.000000 48880.000000\ wgEncodeUwTfbsHcmCtcfStdRawRep2 HCM CTCF Sg 2 bigWig 1.000000 7263.000000 HCM CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 216 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCM CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HCM CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3HCM rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHcmCtcfStdRawRep2\ type bigWig 1.000000 7263.000000\ wgEncodeCshlLongRnaSeqHelas3CellPapAlnRep1 HeS3 cel pA+ A 1 bam HeLa-S3 whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 216 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeS3 cel pA+ A 1\ subGroups view=Alignments cellType=t2HELAS3 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHelas3CellPapAlnRep1\ type bam\ wgEncodeHaibTfbsH1hescCreb1sc240V0422111RawRep1 hESC CREB1 V11 1 bigWig 1.000000 6109.000000 H1-hESC CREB1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 216 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC CREB1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC CREB1 V11 1\ subGroups view=RawSignal factor=CREB1SC240 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescCreb1sc240V0422111RawRep1\ type bigWig 1.000000 6109.000000\ wgEncodeRikenCageHuvecCellPapPlusSignalRep2 HUVE cell pA+ + 2 bigWig 0.040000 10398.650391 HUVEC whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 216 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HUVE cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t2HUVEC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHuvecCellPapPlusSignalRep2\ type bigWig 0.040000 10398.650391\ wgEncodeOpenChromDnaseIshikawaTam10030BaseOverlapSignal Ishi OHTAM OS bigWig 0.000000 209.000000 Ishikawa 4-OHTAM 100 nM 30 m DNaseI HS Overlap Signal from ENCODE/Duke 2 216 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Ishikawa 4-OHTAM 100 nM 30 m DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Ishi OHTAM OS\ subGroups view=SIGBO cellType=t3ISHIKAWA treatment=A4TAM10030\ track wgEncodeOpenChromDnaseIshikawaTam10030BaseOverlapSignal\ type bigWig 0.000000 209.000000\ wgEncodeSydhTfbsK562E2f6UcdSig K562 E2F6 UCD bigWig 0.000000 13086.099609 K562 E2F6 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 216 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 E2F6 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 E2F6 UCD\ subGroups view=Signal factor=E2F6 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562E2f6UcdSig\ type bigWig 0.000000 13086.099609\ wgEncodeAwgTfbsSydhK562MaxIggrabUniPk K562 MAX s narrowPeak K562 TFBS Uniform Peaks of Max from ENCODE/Stanford/Analysis 1 216 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Max from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 MAX s\ subGroups tier=a10 cellType=a10K562 factor=MAX lab=Stanford\ track wgEncodeAwgTfbsSydhK562MaxIggrabUniPk\ wgEncodeCshlShortRnaSeqMcf7CytosolShorttotalMinusRep4 MCF7 cyto - 2 bigWig 1.000000 16662908.000000 MCF-7 cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 216 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel MCF7 cyto - 2\ subGroups view=MinusSignal cellType=t2MCF7 localization=CYTOSOL protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqMcf7CytosolShorttotalMinusRep4\ type bigWig 1.000000 16662908.000000\ wgEncodeUwDgfTregwb78495824Raw Treg Raw bigWig 1.000000 146038.000000 Treg Wb78495824 DNaseI DGF Raw Signal from ENCODE/UW 0 216 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Treg Wb78495824 DNaseI DGF Raw Signal from ENCODE/UW\ parent wgEncodeUwDgfViewzRaw off\ shortLabel Treg Raw\ subGroups view=zRaw cellType=t3TREGWB78495824 treatment=aNONE rep=rep1\ track wgEncodeUwDgfTregwb78495824Raw\ type bigWig 1.000000 146038.000000\ wgEncodeUwHistoneCaco2H3k27me3StdHotspotsRep2 Caco H3K27M3 Ht 2 broadPeak Caco-2 H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 217 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel Caco H3K27M3 Ht 2\ subGroups view=Hot factor=H3K27ME3 cellType=t3CACO2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k27me3StdHotspotsRep2\ type broadPeak\ encTfChipPkENCFF566YUW GM12878 ZNF592 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF592 in GM12878 from ENCODE 3 (ENCFF566YUW) 1 217 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ZNF592 in GM12878 from ENCODE 3 (ENCFF566YUW)\ parent encTfChipPk off\ shortLabel GM12878 ZNF592\ subGroups cellType=GM12878 factor=ZNF592\ track encTfChipPkENCFF566YUW\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_ctss_rev H9MelanocyticInduction_Day12Br3- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_reverse 0 217 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12949.12828-137A2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_tpm_rev H9MelanocyticInduction_Day12Br3- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_reverse 1 217 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12949.12828-137A2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHaspHotspotsRep2 HAsp Ht 2 broadPeak HA-sp DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 217 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-sp DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HAsp Ht 2\ subGroups view=Hot cellType=t3HAASP rep=rep2 treatment=None\ track wgEncodeUwDnaseHaspHotspotsRep2\ type broadPeak\ wgEncodeUwTfbsHcmInputStdRawRep1 HCM In Sg 1 bigWig 1.000000 18082.000000 HCM Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 217 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCM Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HCM In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HCM rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHcmInputStdRawRep1\ type bigWig 1.000000 18082.000000\ wgEncodeBroadHistoneHelas3CtcfStdPk HeLa-S3 CTCF broadPeak HeLa-S3 CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 217 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HeLa-S3 CTCF\ subGroups view=Peaks factor=CTCF cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3CtcfStdPk\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3CellPapAlnRep2 HeS3 cel pA+ A 2 bam HeLa-S3 whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 217 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeS3 cel pA+ A 2\ subGroups view=Alignments cellType=t2HELAS3 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3CellPapAlnRep2\ type bam\ wgEncodeHaibTfbsH1hescCreb1sc240V0422111PkRep2 hESC CREB1 V11 2 broadPeak H1-hESC CREB1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 217 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC CREB1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC CREB1 V11 2\ subGroups view=Peaks factor=CREB1SC240 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescCreb1sc240V0422111PkRep2\ type broadPeak\ wgEncodeRikenCageHuvecCellPapMinusSignalRep1 HUVE cell pA+ - 1 bigWig 0.040000 12203.730469 HUVEC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 217 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HUVE cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t2HUVEC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHuvecCellPapMinusSignalRep1\ type bigWig 0.040000 12203.730469\ wgEncodeOpenChromDnaseIshikawaEst10nm30mPk Ishi Estr 30m Pk narrowPeak Ishikawa Estradiol 10 nM 30 m DNaseI HS Peaks from ENCODE/Duke 3 217 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Ishikawa Estradiol 10 nM 30 m DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Ishi Estr 30m Pk\ subGroups view=Peaks cellType=t3ISHIKAWA treatment=EST10NM30M\ track wgEncodeOpenChromDnaseIshikawaEst10nm30mPk\ type narrowPeak\ wgEncodeSydhTfbsK562Elk112771IggrabPk K562 ELK1 IgR narrowPeak K562 ELK1 (1277-1) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 217 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ELK1 (1277-1) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 ELK1 IgR\ subGroups view=Peaks factor=ELK112771 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Elk112771IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Mazab85725IggrabUniPk K562 MAZ narrowPeak K562 TFBS Uniform Peaks of MAZ_(ab85725) from ENCODE/Stanford/Analysis 1 217 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of MAZ_(ab85725) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 MAZ\ subGroups tier=a10 cellType=a10K562 factor=MAZ lab=Stanford\ track wgEncodeAwgTfbsSydhK562Mazab85725IggrabUniPk\ wgEncodeCshlShortRnaSeqMcf7CytosolShorttotalPlusRep3 MCF7 cyto + 1 bigWig 1.000000 22572416.000000 MCF-7 cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 217 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel MCF7 cyto + 1\ subGroups view=PlusSignal cellType=t2MCF7 localization=CYTOSOL protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqMcf7CytosolShorttotalPlusRep3\ type bigWig 1.000000 22572416.000000\ wgEncodeUwHistoneCaco2H3k27me3StdPkRep2 Caco H3K27M3 Pk 2 narrowPeak Caco-2 H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 218 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel Caco H3K27M3 Pk 2\ subGroups view=Peaks factor=H3K27ME3 cellType=t3CACO2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k27me3StdPkRep2\ type narrowPeak\ encTfChipPkENCFF643OWO GM12878 ZNF687 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF687 in GM12878 from ENCODE 3 (ENCFF643OWO) 1 218 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ZNF687 in GM12878 from ENCODE 3 (ENCFF643OWO)\ parent encTfChipPk off\ shortLabel GM12878 ZNF687\ subGroups cellType=GM12878 factor=ZNF687\ track encTfChipPkENCFF643OWO\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_ctss_rev H9MelanocyticInduction_Day12Br3- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_reverse 0 218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12995.12828-137A2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_tpm_rev H9MelanocyticInduction_Day12Br3- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_reverse 1 218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12995.12828-137A2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHaspPkRep2 HAsp Pk 2 narrowPeak HA-sp DNaseI HS Peaks Rep 2 from ENCODE/UW 1 218 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-sp DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HAsp Pk 2\ subGroups view=Peaks cellType=t3HAASP rep=rep2 treatment=None\ track wgEncodeUwDnaseHaspPkRep2\ type narrowPeak\ wgEncodeUwTfbsHcpeCtcfStdHotspotsRep1 HCpC CTCF Ht 1 broadPeak HCPEpIC CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 218 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpIC CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HCpC CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HCPEPIC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHcpeCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHelas3CtcfStdSig HeLa-S3 CTCF bigWig 0.040000 32444.480469 HeLa-S3 CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 218 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HeLa-S3 CTCF\ subGroups view=Signal factor=CTCF cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3CtcfStdSig\ type bigWig 0.040000 32444.480469\ wgEncodeCshlLongRnaSeqHelas3CellPapContigs HeS3 cel pA+ C bed 6 + HeLa-S3 whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 218 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HeS3 cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HELAS3 localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqHelas3CellPapContigs\ type bed 6 +\ wgEncodeHaibTfbsH1hescCreb1sc240V0422111RawRep2 hESC CREB1 V11 2 bigWig 1.000000 6515.000000 H1-hESC CREB1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 218 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC CREB1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC CREB1 V11 2\ subGroups view=RawSignal factor=CREB1SC240 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescCreb1sc240V0422111RawRep2\ type bigWig 1.000000 6515.000000\ wgEncodeRikenCageHuvecCellPapMinusSignalRep2 HUVE cell pA+ - 2 bigWig 0.040000 11331.299805 HUVEC whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 218 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HUVE cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t2HUVEC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHuvecCellPapMinusSignalRep2\ type bigWig 0.040000 11331.299805\ wgEncodeOpenChromDnaseIshikawaEst10nm30mSig Ishi Estr 30m DS bigWig 0.000000 0.971500 Ishikawa Estradiol 10 nM 30 m DNaseI HS Density Signal from ENCODE/Duke 2 218 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Ishikawa Estradiol 10 nM 30 m DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Ishi Estr 30m DS\ subGroups view=SIG cellType=t3ISHIKAWA treatment=EST10NM30M\ track wgEncodeOpenChromDnaseIshikawaEst10nm30mSig\ type bigWig 0.000000 0.971500\ wgEncodeSydhTfbsK562Elk112771IggrabSig K562 ELK1 IgR bigWig 1.000000 14009.000000 K562 ELK1 (1277-1) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 218 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ELK1 (1277-1) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 ELK1 IgR\ subGroups view=Signal factor=ELK112771 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Elk112771IggrabSig\ type bigWig 1.000000 14009.000000\ wgEncodeAwgTfbsHaibK562Mef2aV0416101UniPk K562 MEF2A narrowPeak K562 TFBS Uniform Peaks of MEF2A from ENCODE/HudsonAlpha/Analysis 1 218 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of MEF2A from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 MEF2A\ subGroups tier=a10 cellType=a10K562 factor=MEF2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Mef2aV0416101UniPk\ wgEncodeCshlShortRnaSeqMcf7CytosolShorttotalPlusRep4 MCF7 cyto + 2 bigWig 1.000000 23678792.000000 MCF-7 cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 218 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel MCF7 cyto + 2\ subGroups view=PlusSignal cellType=t2MCF7 localization=CYTOSOL protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqMcf7CytosolShorttotalPlusRep4\ type bigWig 1.000000 23678792.000000\ wgEncodeUwHistoneCaco2H3k27me3StdRawRep2 Caco H3K27M3 Sg 2 bigWig 1.000000 6994.000000 Caco-2 H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 219 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Caco-2 H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel Caco H3K27M3 Sg 2\ subGroups view=zRSig factor=H3K27ME3 cellType=t3CACO2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k27me3StdRawRep2\ type bigWig 1.000000 6994.000000\ encTfChipPkENCFF455HXN GM12878 ZSCAN29 narrowPeak Transcription Factor ChIP-seq Peaks of ZSCAN29 in GM12878 from ENCODE 3 (ENCFF455HXN) 1 219 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ZSCAN29 in GM12878 from ENCODE 3 (ENCFF455HXN)\ parent encTfChipPk off\ shortLabel GM12878 ZSCAN29\ subGroups cellType=GM12878 factor=ZSCAN29\ track encTfChipPkENCFF455HXN\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_ctss_fwd H9MelanocyticInduction_Day15Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_forward 0 219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep1%20%28H9EB-1%20d15%29.CNhs12898.12633-134F5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12633-134F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_tpm_fwd H9MelanocyticInduction_Day15Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_forward 1 219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep1%20%28H9EB-1%20d15%29.CNhs12898.12633-134F5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12633-134F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHaspRawRep2 HAsp Sg 2 bigWig 1.000000 37615.000000 HA-sp DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 219 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HA-sp DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HAsp Sg 2\ subGroups view=zRSig cellType=t3HAASP rep=rep2 treatment=None\ track wgEncodeUwDnaseHaspRawRep2\ type bigWig 1.000000 37615.000000\ wgEncodeUwTfbsHcpeCtcfStdPkRep1 HCpC CTCF Pk 1 narrowPeak HCPEpIC CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 219 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpIC CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HCpC CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HCPEPIC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHcpeCtcfStdPkRep1\ type narrowPeak\ wgEncodeBroadHistoneHelas3Ezh239875Pk HeLa-S3 EZH2 broadPeak HeLa-S3 EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 219 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HeLa-S3 EZH2\ subGroups view=Peaks factor=EZH239875 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3Ezh239875Pk\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3CellPapJunctions HeS3 cel pA+ J bed 6 + HeLa-S3 whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 219 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HeS3 cel pA+ J\ subGroups view=Junctions cellType=t2HELAS3 localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHelas3CellPapJunctions\ type bed 6 +\ wgEncodeHaibTfbsH1hescCtcfsc5916V0416102PkRep1 hESC CTCF V102 1 broadPeak H1-hESC CTCF 5916 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 219 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC CTCF 5916 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC CTCF V102 1\ subGroups view=Peaks factor=CTCFSC5916 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescCtcfsc5916V0416102PkRep1\ type broadPeak\ wgEncodeRikenCageHuvecCellPapAlnRep1 HUVE cell pA+ A 1 bam HUVEC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 219 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HUVE cell pA+ A 1\ subGroups view=Alignments cellType=t2HUVEC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHuvecCellPapAlnRep1\ type bam\ wgEncodeOpenChromDnaseIshikawaEst10nm30mBaseOverlapSignal Ishi Estr 30m OS bigWig 0.000000 198.000000 Ishikawa Estradiol 10 nM 30 m DNaseI HS Overlap Signal from ENCODE/Duke 2 219 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Ishikawa Estradiol 10 nM 30 m DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Ishi Estr 30m OS\ subGroups view=SIGBO cellType=t3ISHIKAWA treatment=EST10NM30M\ track wgEncodeOpenChromDnaseIshikawaEst10nm30mBaseOverlapSignal\ type bigWig 0.000000 198.000000\ wgEncodeSydhTfbsK562Gata1UcdPk K562 GAT1 UCD narrowPeak K562 GATA1 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 219 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 GATA1 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 GAT1 UCD\ subGroups view=Peaks factor=GATA1 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Gata1UcdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Mxi1af4185IggrabUniPk K562 MXI1 narrowPeak K562 TFBS Uniform Peaks of Mxi1_(AF4185) from ENCODE/Stanford/Analysis 1 219 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Mxi1_(AF4185) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 MXI1\ subGroups tier=a10 cellType=a10K562 factor=MXI1 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Mxi1af4185IggrabUniPk\ wgEncodeCshlShortRnaSeqMcf7CytosolTapContigs MCF7 cyto TAP C bed 6 MCF-7 TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL 2 219 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel MCF7 cyto TAP C\ subGroups view=Contigs rep=Pooled cellType=t2MCF7 localization=CYTOSOL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqMcf7CytosolTapContigs\ type bed 6\ wgEncodeUwHistoneCaco2H3k36me3StdHotspotsRep1 Caco H3K36M3 Ht 1 broadPeak Caco-2 H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 220 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel Caco H3K36M3 Ht 1\ subGroups view=Hot factor=H3K36ME3 cellType=t3CACO2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k36me3StdHotspotsRep1\ type broadPeak\ encTfChipPkENCFF310XJC GM12878 ZZZ3 narrowPeak Transcription Factor ChIP-seq Peaks of ZZZ3 in GM12878 from ENCODE 3 (ENCFF310XJC) 1 220 153 38 0 204 146 127 0 0 0 regulation 1 color 153,38,0\ longLabel Transcription Factor ChIP-seq Peaks of ZZZ3 in GM12878 from ENCODE 3 (ENCFF310XJC)\ parent encTfChipPk off\ shortLabel GM12878 ZZZ3\ subGroups cellType=GM12878 factor=ZZZ3\ track encTfChipPkENCFF310XJC\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_ctss_rev H9MelanocyticInduction_Day15Br1- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_reverse 0 220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep1%20%28H9EB-1%20d15%29.CNhs12898.12633-134F5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12633-134F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_tpm_rev H9MelanocyticInduction_Day15Br1- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_reverse 1 220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep1%20%28H9EB-1%20d15%29.CNhs12898.12633-134F5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12633-134F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHacHotspotsRep1 HAc Ht 1 broadPeak HAc DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 220 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAc DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HAc Ht 1\ subGroups view=Hot cellType=t3HAC rep=rep1 treatment=None\ track wgEncodeUwDnaseHacHotspotsRep1\ type broadPeak\ wgEncodeUwTfbsHcpeCtcfStdRawRep1 HCpC CTCF Sg 1 bigWig 1.000000 2683.000000 HCPEpIC CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 220 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCPEpIC CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HCpC CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HCPEPIC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHcpeCtcfStdRawRep1\ type bigWig 1.000000 2683.000000\ wgEncodeBroadHistoneHelas3Ezh239875Sig HeLa-S3 EZH2 bigWig 0.040000 34486.441406 HeLa-S3 EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 220 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HeLa-S3 EZH2\ subGroups view=Signal factor=EZH239875 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3Ezh239875Sig\ type bigWig 0.040000 34486.441406\ wgEncodeCshlLongRnaSeqHelas3CellPapMinusRawSigRep1 HeS3 cel pA+ - 1 bigWig 1.000000 97260.000000 HeLa-S3 whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 220 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeS3 cel pA+ - 1\ subGroups view=MinusSignal cellType=t2HELAS3 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHelas3CellPapMinusRawSigRep1\ type bigWig 1.000000 97260.000000\ wgEncodeHaibTfbsH1hescCtcfsc5916V0416102RawRep1 hESC CTCF V102 1 bigWig 0.171852 170.477005 H1-hESC CTCF 5916 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 220 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC CTCF 5916 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC CTCF V102 1\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescCtcfsc5916V0416102RawRep1\ type bigWig 0.171852 170.477005\ wgEncodeRikenCageHuvecCellPapAlnRep2 HUVE cell pA+ A 2 bam HUVEC whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 220 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HUVE cell pA+ A 2\ subGroups view=Alignments cellType=t2HUVEC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHuvecCellPapAlnRep2\ type bam\ wgEncodeSydhTfbsK562Gata1UcdSig K562 GAT1 UCD bigWig 0.000000 9299.099609 K562 GATA1 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 220 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 GATA1 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 GAT1 UCD\ subGroups view=Signal factor=GATA1 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Gata1UcdSig\ type bigWig 0.000000 9299.099609\ wgEncodeAwgTfbsSydhK562CmycIggrabUniPk K562 MYC s narrowPeak K562 TFBS Uniform Peaks of c-Myc from ENCODE/Stanford/Analysis 1 220 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of c-Myc from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 MYC s\ subGroups tier=a10 cellType=a10K562 factor=MYC lab=Stanford\ track wgEncodeAwgTfbsSydhK562CmycIggrabUniPk\ wgEncodeOpenChromDnaseLncapAndroPk LNCaP Methyl Pk narrowPeak LNCaP Methyltrienolone DNaseI HS Peaks from ENCODE/Duke 3 220 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel LNCaP Methyltrienolone DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel LNCaP Methyl Pk\ subGroups view=Peaks cellType=t3LNCAP treatment=METHYLT\ track wgEncodeOpenChromDnaseLncapAndroPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqMcf7CytosolShorttotalTapMinusRep3 MCF7 cyto TAP - 1 bigWig 1.000000 7757250.000000 MCF-7 TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 220 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel MCF7 cyto TAP - 1\ subGroups view=MinusSignal cellType=t2MCF7 localization=CYTOSOL protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqMcf7CytosolShorttotalTapMinusRep3\ type bigWig 1.000000 7757250.000000\ wgEncodeUwHistoneCaco2H3k36me3StdPkRep1 Caco H3K36M3 Pk 1 narrowPeak Caco-2 H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 221 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel Caco H3K36M3 Pk 1\ subGroups view=Peaks factor=H3K36ME3 cellType=t3CACO2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k36me3StdPkRep1\ type narrowPeak\ encTfChipPkENCFF067QUU GM12891 PAX5 narrowPeak Transcription Factor ChIP-seq Peaks of PAX5 in GM12891 from ENCODE 3 (ENCFF067QUU) 1 221 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of PAX5 in GM12891 from ENCODE 3 (ENCFF067QUU)\ parent encTfChipPk off\ shortLabel GM12891 PAX5\ subGroups cellType=GM12891 factor=PAX5\ track encTfChipPkENCFF067QUU\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_ctss_fwd H9MelanocyticInduction_Day15Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_forward 0 221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep2%20%28H9EB-2%20d15%29.CNhs12831.12731-135H4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12731-135H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_tpm_fwd H9MelanocyticInduction_Day15Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_forward 1 221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep2%20%28H9EB-2%20d15%29.CNhs12831.12731-135H4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12731-135H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHacPkRep1 HAc Pk 1 narrowPeak HAc DNaseI HS Peaks Rep 1 from ENCODE/UW 1 221 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAc DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HAc Pk 1\ subGroups view=Peaks cellType=t3HAC rep=rep1 treatment=None\ track wgEncodeUwDnaseHacPkRep1\ type narrowPeak\ wgEncodeUwTfbsHcpeCtcfStdHotspotsRep2 HCpC CTCF Ht 2 broadPeak HCPEpIC CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 221 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpIC CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HCpC CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3HCPEPIC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHcpeCtcfStdHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneHelas3H2azPk HeLa-S3 H2A.Z broadPeak HeLa-S3 H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 221 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HeLa-S3 H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H2azPk\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3CellPapMinusRawSigRep2 HeS3 cel pA+ - 2 bigWig 1.000000 302289.000000 HeLa-S3 whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 221 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeS3 cel pA+ - 2\ subGroups view=MinusSignal cellType=t2HELAS3 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3CellPapMinusRawSigRep2\ type bigWig 1.000000 302289.000000\ wgEncodeHaibTfbsH1hescCtcfsc5916V0416102PkRep2 hESC CTCF V102 2 broadPeak H1-hESC CTCF 5916 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 221 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC CTCF 5916 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC CTCF V102 2\ subGroups view=Peaks factor=CTCFSC5916 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescCtcfsc5916V0416102PkRep2\ type broadPeak\ wgEncodeRikenCageImr90CytosolPapTssHmm IMR9 cyto pA+ bed 6 IMR90 cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 221 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel IMR9 cyto pA+\ subGroups view=TssHmm cellType=t2IMR90 localization=cytosol rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageImr90CytosolPapTssHmm\ type bed 6\ wgEncodeSydhTfbsK562Gata1bIggmusPk K562 GATA1 IgM narrowPeak K562 GATA1 (SC-266) IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 221 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 GATA1 (SC-266) IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 GATA1 IgM\ subGroups view=Peaks factor=GATA1b cellType=t1K562 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsK562Gata1bIggmusPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562CmycIfng30UniPk K562+IFNg30 MYC narrowPeak K562 (IFNg30) TFBS Uniform Peaks of c-Myc from ENCODE/Stanford/Analysis 1 221 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNg30) TFBS Uniform Peaks of c-Myc from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNg30 MYC\ subGroups tier=a10 cellType=a10K562 factor=MYC lab=Stanford\ track wgEncodeAwgTfbsSydhK562CmycIfng30UniPk\ wgEncodeOpenChromDnaseLncapAndroSig LNCaP Methyl DS bigWig 0.000000 1.231700 LNCaP Methyltrienolone DNaseI HS Density Signal from ENCODE/Duke 2 221 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel LNCaP Methyltrienolone DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel LNCaP Methyl DS\ subGroups view=SIG cellType=t3LNCAP treatment=METHYLT\ track wgEncodeOpenChromDnaseLncapAndroSig\ type bigWig 0.000000 1.231700\ wgEncodeCshlShortRnaSeqMcf7CytosolShorttotalTapMinusRep4 MCF7 cyto TAP - 2 bigWig 1.000000 10680805.000000 MCF-7 TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 221 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel MCF7 cyto TAP - 2\ subGroups view=MinusSignal cellType=t2MCF7 localization=CYTOSOL protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqMcf7CytosolShorttotalTapMinusRep4\ type bigWig 1.000000 10680805.000000\ wgEncodeUwHistoneCaco2H3k36me3StdRawRep1 Caco H3K36M3 Sg 1 bigWig 1.000000 7188.000000 Caco-2 H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 222 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Caco-2 H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel Caco H3K36M3 Sg 1\ subGroups view=zRSig factor=H3K36ME3 cellType=t3CACO2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k36me3StdRawRep1\ type bigWig 1.000000 7188.000000\ encTfChipPkENCFF063IRW GM12891 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in GM12891 from ENCODE 3 (ENCFF063IRW) 1 222 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in GM12891 from ENCODE 3 (ENCFF063IRW)\ parent encTfChipPk off\ shortLabel GM12891 POLR2A\ subGroups cellType=GM12891 factor=POLR2A\ track encTfChipPkENCFF063IRW\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_ctss_rev H9MelanocyticInduction_Day15Br2- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_reverse 0 222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep2%20%28H9EB-2%20d15%29.CNhs12831.12731-135H4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12731-135H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_tpm_rev H9MelanocyticInduction_Day15Br2- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_reverse 1 222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep2%20%28H9EB-2%20d15%29.CNhs12831.12731-135H4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12731-135H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHacRawRep1 HAc Sg 1 bigWig 1.000000 30483.000000 HAc DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 222 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HAc DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HAc Sg 1\ subGroups view=zRSig cellType=t3HAC rep=rep1 treatment=None\ track wgEncodeUwDnaseHacRawRep1\ type bigWig 1.000000 30483.000000\ wgEncodeUwTfbsHcpeCtcfStdPkRep2 HCpC CTCF Pk 2 narrowPeak HCPEpIC CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 222 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpIC CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HCpC CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3HCPEPIC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHcpeCtcfStdPkRep2\ type narrowPeak\ wgEncodeBroadHistoneHelas3H2azSig HeLa-S3 H2A.Z bigWig 0.040000 37023.699219 HeLa-S3 H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 222 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HeLa-S3 H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H2azSig\ type bigWig 0.040000 37023.699219\ wgEncodeCshlLongRnaSeqHelas3CellPapPlusRawSigRep1 HeS3 cel pA+ + 1 bigWig 1.000000 1098303.000000 HeLa-S3 whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 222 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeS3 cel pA+ + 1\ subGroups view=PlusSignal cellType=t2HELAS3 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHelas3CellPapPlusRawSigRep1\ type bigWig 1.000000 1098303.000000\ wgEncodeHaibTfbsH1hescCtcfsc5916V0416102RawRep2 hESC CTCF V102 2 bigWig 0.067644 253.835007 H1-hESC CTCF 5916 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 222 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC CTCF 5916 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC CTCF V102 2\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescCtcfsc5916V0416102RawRep2\ type bigWig 0.067644 253.835007\ wgEncodeRikenCageImr90CytosolPapPlusRawRep1 IMR9 cyto pA+ + 1 bigWig 1.000000 321560.000000 IMR90 cytosol polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 222 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 cytosol polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel IMR9 cyto pA+ + 1\ subGroups view=PlusRawSignal cellType=t2IMR90 localization=cytosol rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageImr90CytosolPapPlusRawRep1\ type bigWig 1.000000 321560.000000\ wgEncodeSydhTfbsK562Gata1bIggmusSig K562 GATA1 IgM bigWig 1.000000 480.000000 K562 GATA1 (SC-266) IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 222 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 GATA1 (SC-266) IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 GATA1 IgM\ subGroups view=Signal factor=GATA1b cellType=t1K562 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsK562Gata1bIggmusSig\ type bigWig 1.000000 480.000000\ wgEncodeAwgTfbsUtaK562CmycUniPk K562 MYC t narrowPeak K562 TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis 1 222 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 MYC t\ subGroups tier=a10 cellType=a10K562 factor=MYC lab=UT-A\ track wgEncodeAwgTfbsUtaK562CmycUniPk\ wgEncodeOpenChromDnaseLncapAndroBaseOverlapSignal LNCaP Methyl OS bigWig 0.000000 220.000000 LNCaP Methyltrienolone DNaseI HS Overlap Signal from ENCODE/Duke 2 222 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel LNCaP Methyltrienolone DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel LNCaP Methyl OS\ subGroups view=SIGBO cellType=t3LNCAP treatment=METHYLT\ track wgEncodeOpenChromDnaseLncapAndroBaseOverlapSignal\ type bigWig 0.000000 220.000000\ wgEncodeCshlShortRnaSeqMcf7CytosolShorttotalTapPlusRep3 MCF7 cyto TAP + 1 bigWig 1.000000 15087596.000000 MCF-7 TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 222 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel MCF7 cyto TAP + 1\ subGroups view=PlusSignal cellType=t2MCF7 localization=CYTOSOL protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqMcf7CytosolShorttotalTapPlusRep3\ type bigWig 1.000000 15087596.000000\ wgEncodeUwHistoneCaco2H3k36me3StdHotspotsRep2 Caco H3K36M3 Ht 2 broadPeak Caco-2 H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 223 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel Caco H3K36M3 Ht 2\ subGroups view=Hot factor=H3K36ME3 cellType=t3CACO2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k36me3StdHotspotsRep2\ type broadPeak\ encTfChipPkENCFF809HPK GM12891 POU2F2 narrowPeak Transcription Factor ChIP-seq Peaks of POU2F2 in GM12891 from ENCODE 3 (ENCFF809HPK) 1 223 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POU2F2 in GM12891 from ENCODE 3 (ENCFF809HPK)\ parent encTfChipPk off\ shortLabel GM12891 POU2F2\ subGroups cellType=GM12891 factor=POU2F2\ track encTfChipPkENCFF809HPK\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_ctss_fwd H9MelanocyticInduction_Day15Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_forward 0 223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep3%20%28H9EB-3%20d15%29.CNhs12912.12829-137A3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12829-137A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_tpm_fwd H9MelanocyticInduction_Day15Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_forward 1 223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep3%20%28H9EB-3%20d15%29.CNhs12912.12829-137A3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12829-137A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHacHotspotsRep2 HAc Ht 2 broadPeak HAc DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 223 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAc DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HAc Ht 2\ subGroups view=Hot cellType=t3HAC rep=rep2 treatment=None\ track wgEncodeUwDnaseHacHotspotsRep2\ type broadPeak\ wgEncodeUwTfbsHcpeCtcfStdRawRep2 HCpC CTCF Sg 2 bigWig 1.000000 15624.000000 HCPEpIC CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 223 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCPEpIC CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HCpC CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3HCPEPIC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHcpeCtcfStdRawRep2\ type bigWig 1.000000 15624.000000\ wgEncodeBroadHistoneHelas3H3k04me1StdPk HeLa-S3 H3K4m1 broadPeak HeLa-S3 H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 223 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HeLa-S3 H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k04me1StdPk\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3CellPapPlusRawSigRep2 HeS3 cel pA+ + 2 bigWig 1.000000 1063394.000000 HeLa-S3 whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 223 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeS3 cel pA+ + 2\ subGroups view=PlusSignal cellType=t2HELAS3 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3CellPapPlusRawSigRep2\ type bigWig 1.000000 1063394.000000\ wgEncodeHaibTfbsH1hescE2f6V0422111PkRep1 hESC E2F6 V11 1 broadPeak H1-hESC E2F6 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 223 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC E2F6 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC E2F6 V11 1\ subGroups view=Peaks factor=E2F6 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescE2f6V0422111PkRep1\ type broadPeak\ wgEncodeRikenCageImr90CytosolPapPlusRawRep2 IMR9 cyto pA+ + 2 bigWig 1.000000 466722.000000 IMR90 cytosol polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 223 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 cytosol polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel IMR9 cyto pA+ + 2\ subGroups view=PlusRawSignal cellType=t2IMR90 localization=cytosol rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageImr90CytosolPapPlusRawRep2\ type bigWig 1.000000 466722.000000\ wgEncodeSydhTfbsK562Gata2UcdPk K562 GAT2 UCD narrowPeak K562 GATA2 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 223 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 GATA2 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 GAT2 UCD\ subGroups view=Peaks factor=GATA2 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Gata2UcdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562CmycUniPk K562 MYC y narrowPeak K562 TFBS Uniform Peaks of c-Myc from ENCODE/Yale/Analysis 1 223 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of c-Myc from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 MYC y\ subGroups tier=a10 cellType=a10K562 factor=MYC lab=Yale\ track wgEncodeAwgTfbsSydhK562CmycUniPk\ wgEncodeOpenChromDnaseLncapPk LNCaP Pk narrowPeak LNCaP DNaseI HS Peaks from ENCODE/Duke 3 223 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel LNCaP DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel LNCaP Pk\ subGroups view=Peaks cellType=t3LNCAP treatment=zNONE\ track wgEncodeOpenChromDnaseLncapPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqMcf7CytosolShorttotalTapPlusRep4 MCF7 cyto TAP + 2 bigWig 1.000000 9344259.000000 MCF-7 TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 223 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel MCF7 cyto TAP + 2\ subGroups view=PlusSignal cellType=t2MCF7 localization=CYTOSOL protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqMcf7CytosolShorttotalTapPlusRep4\ type bigWig 1.000000 9344259.000000\ wgEncodeUwHistoneCaco2H3k36me3StdPkRep2 Caco H3K36M3 Pk 2 narrowPeak Caco-2 H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 224 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel Caco H3K36M3 Pk 2\ subGroups view=Peaks factor=H3K36ME3 cellType=t3CACO2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k36me3StdPkRep2\ type narrowPeak\ encTfChipPkENCFF526NYA GM12891 SPI1 narrowPeak Transcription Factor ChIP-seq Peaks of SPI1 in GM12891 from ENCODE 3 (ENCFF526NYA) 1 224 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SPI1 in GM12891 from ENCODE 3 (ENCFF526NYA)\ parent encTfChipPk off\ shortLabel GM12891 SPI1\ subGroups cellType=GM12891 factor=SPI1\ track encTfChipPkENCFF526NYA\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_ctss_rev H9MelanocyticInduction_Day15Br3- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_reverse 0 224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep3%20%28H9EB-3%20d15%29.CNhs12912.12829-137A3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12829-137A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_tpm_rev H9MelanocyticInduction_Day15Br3- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_reverse 1 224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep3%20%28H9EB-3%20d15%29.CNhs12912.12829-137A3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12829-137A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHacPkRep2 HAc Pk 2 narrowPeak HAc DNaseI HS Peaks Rep 2 from ENCODE/UW 1 224 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAc DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HAc Pk 2\ subGroups view=Peaks cellType=t3HAC rep=rep2 treatment=None\ track wgEncodeUwDnaseHacPkRep2\ type narrowPeak\ wgEncodeUwTfbsHcpeInputStdRawRep1 HCpC In Sg 1 bigWig 1.000000 15167.000000 HCPEpIC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 224 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCPEpIC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HCpC In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HCPEPIC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHcpeInputStdRawRep1\ type bigWig 1.000000 15167.000000\ wgEncodeBroadHistoneHelas3H3k04me1StdSig HeLa-S3 H3K4m1 bigWig 0.040000 17985.839844 HeLa-S3 H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 224 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HeLa-S3 H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k04me1StdSig\ type bigWig 0.040000 17985.839844\ wgEncodeCshlLongRnaSeqHelas3CytosolLongnonpolyaAlnRep2 HeS3 cyt pA- A 2 bam HeLa-S3 cytosol polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 224 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 cytosol polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeS3 cyt pA- A 2\ subGroups view=Alignments cellType=t2HELAS3 localization=CYTOSOL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3CytosolLongnonpolyaAlnRep2\ type bam\ wgEncodeHaibTfbsH1hescE2f6V0422111RawRep1 hESC E2F6 V11 1 bigWig 1.000000 4357.000000 H1-hESC E2F6 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 224 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC E2F6 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC E2F6 V11 1\ subGroups view=RawSignal factor=E2F6 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescE2f6V0422111RawRep1\ type bigWig 1.000000 4357.000000\ wgEncodeRikenCageImr90CytosolPapMinusRawRep1 IMR9 cyto pA+ - 1 bigWig 1.000000 215216.000000 IMR90 cytosol polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 224 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 cytosol polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel IMR9 cyto pA+ - 1\ subGroups view=MinusRawSignal cellType=t2IMR90 localization=cytosol rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageImr90CytosolPapMinusRawRep1\ type bigWig 1.000000 215216.000000\ wgEncodeSydhTfbsK562Gata2UcdSig K562 GAT2 UCD bigWig 0.000000 10557.900391 K562 GATA2 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 224 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 GATA2 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 GAT2 UCD\ subGroups view=Signal factor=GATA2 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Gata2UcdSig\ type bigWig 0.000000 10557.900391\ wgEncodeAwgTfbsSydhK562CmycIfna30UniPk K562+IFNa30 MYC narrowPeak K562 (IFNa30) TFBS Uniform Peaks of c-Myc from ENCODE/Yale/Analysis 1 224 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNa30) TFBS Uniform Peaks of c-Myc from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNa30 MYC\ subGroups tier=a10 cellType=a10K562 factor=MYC lab=Yale\ track wgEncodeAwgTfbsSydhK562CmycIfna30UniPk\ wgEncodeOpenChromDnaseLncapSig LNCaP DS bigWig 0.000000 2.732500 LNCaP DNaseI HS Density Signal from ENCODE/Duke 2 224 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel LNCaP DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel LNCaP DS\ subGroups view=SIG cellType=t3LNCAP treatment=zNONE\ track wgEncodeOpenChromDnaseLncapSig\ type bigWig 0.000000 2.732500\ wgEncodeCshlShortRnaSeqMcf7NucleusContigs MCF7 nucl C bed 6 MCF-7 nucleus small RNA-seq Contigs from ENCODE/CSHL 2 224 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel MCF7 nucl C\ subGroups view=Contigs rep=Pooled cellType=t2MCF7 localization=NUCLEUS protocol=NONE rank=none\ track wgEncodeCshlShortRnaSeqMcf7NucleusContigs\ type bed 6\ wgEncodeUwHistoneCaco2H3k36me3StdRawRep2 Caco H3K36M3 Sg 2 bigWig 1.000000 6954.000000 Caco-2 H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 225 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Caco-2 H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel Caco H3K36M3 Sg 2\ subGroups view=zRSig factor=H3K36ME3 cellType=t3CACO2 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneCaco2H3k36me3StdRawRep2\ type bigWig 1.000000 6954.000000\ encTfChipPkENCFF195IKR GM12891 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in GM12891 from ENCODE 3 (ENCFF195IKR) 1 225 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TAF1 in GM12891 from ENCODE 3 (ENCFF195IKR)\ parent encTfChipPk off\ shortLabel GM12891 TAF1\ subGroups cellType=GM12891 factor=TAF1\ track encTfChipPkENCFF195IKR\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_ctss_fwd H9MelanocyticInduction_Day18Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_forward 0 225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep1%20%28H9EB-1%20d18%29.CNhs12899.12634-134F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12634-134F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_tpm_fwd H9MelanocyticInduction_Day18Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_forward 1 225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep1%20%28H9EB-1%20d18%29.CNhs12899.12634-134F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12634-134F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHacRawRep2 HAc Sg 2 bigWig 1.000000 24666.000000 HAc DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 225 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HAc DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HAc Sg 2\ subGroups view=zRSig cellType=t3HAC rep=rep2 treatment=None\ track wgEncodeUwDnaseHacRawRep2\ type bigWig 1.000000 24666.000000\ wgEncodeUwTfbsHct116CtcfStdHotspotsRep1 HCT16 CTCF Ht 1 broadPeak HCT-116 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 225 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel HCT16 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HCT116 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHct116CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHelas3H3k4me2StdPk HeLa-S3 H3K4m2 broadPeak HeLa-S3 H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 225 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HeLa-S3 H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k4me2StdPk\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3CytosolPamContigsV2 HeS3 cyt pA- C bed 6 + HeLa-S3 cytosol polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 225 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 cytosol polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HeS3 cyt pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HELAS3 localization=CYTOSOL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqHelas3CytosolPamContigsV2\ type bed 6 +\ wgEncodeHaibTfbsH1hescE2f6V0422111PkRep2 hESC E2F6 V11 2 broadPeak H1-hESC E2F6 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 225 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC E2F6 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC E2F6 V11 2\ subGroups view=Peaks factor=E2F6 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescE2f6V0422111PkRep2\ type broadPeak\ wgEncodeRikenCageImr90CytosolPapMinusRawRep2 IMR9 cyto pA+ - 2 bigWig 1.000000 251587.000000 IMR90 cytosol polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 225 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 cytosol polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel IMR9 cyto pA+ - 2\ subGroups view=MinusRawSignal cellType=t2IMR90 localization=cytosol rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageImr90CytosolPapMinusRawRep2\ type bigWig 1.000000 251587.000000\ wgEncodeSydhTfbsK562Gtf2bStdPk K562 GT2B Std narrowPeak K562 GTF2B Standard ChIP-seq Peaks from ENCODE/SYDH 3 225 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 GTF2B Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 GT2B Std\ subGroups view=Peaks factor=GTF2B cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Gtf2bStdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562CmycIfna6hUniPk K562+IFNa6h MYC narrowPeak K562 (IFNa6h) TFBS Uniform Peaks of c-Myc from ENCODE/Yale/Analysis 1 225 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNa6h) TFBS Uniform Peaks of c-Myc from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNa6h MYC\ subGroups tier=a10 cellType=a10K562 factor=MYC lab=Yale\ track wgEncodeAwgTfbsSydhK562CmycIfna6hUniPk\ wgEncodeOpenChromDnaseLncapBaseOverlapSignal LNCaP OS bigWig 0.000000 517.000000 LNCaP DNaseI HS Overlap Signal from ENCODE/Duke 2 225 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel LNCaP DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel LNCaP OS\ subGroups view=SIGBO cellType=t3LNCAP treatment=zNONE\ track wgEncodeOpenChromDnaseLncapBaseOverlapSignal\ type bigWig 0.000000 517.000000\ wgEncodeCshlShortRnaSeqMcf7NucleusShorttotalMinusRep3 MCF7 nucl - 1 bigWig 1.000000 15125938.000000 MCF-7 nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 225 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel MCF7 nucl - 1\ subGroups view=MinusSignal cellType=t2MCF7 localization=NUCLEUS protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqMcf7NucleusShorttotalMinusRep3\ type bigWig 1.000000 15125938.000000\ wgEncodeUwHistoneCaco2InputStdRawRep1 Caco In Sg 1 bigWig 1.000000 9741.000000 Caco-2 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 226 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Caco-2 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel Caco In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3CACO2 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneCaco2InputStdRawRep1\ type bigWig 1.000000 9741.000000\ encTfChipPkENCFF081JNO GM12891 YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in GM12891 from ENCODE 3 (ENCFF081JNO) 1 226 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of YY1 in GM12891 from ENCODE 3 (ENCFF081JNO)\ parent encTfChipPk off\ shortLabel GM12891 YY1\ subGroups cellType=GM12891 factor=YY1\ track encTfChipPkENCFF081JNO\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_ctss_rev H9MelanocyticInduction_Day18Br1- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_reverse 0 226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep1%20%28H9EB-1%20d18%29.CNhs12899.12634-134F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12634-134F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_tpm_rev H9MelanocyticInduction_Day18Br1- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_reverse 1 226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep1%20%28H9EB-1%20d18%29.CNhs12899.12634-134F6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12634-134F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHaeHotspotsRep1 HAEpiC Ht 1 broadPeak HAEpiC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 226 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAEpiC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HAEpiC Ht 1\ subGroups view=Hot cellType=t3HAEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHaeHotspotsRep1\ type broadPeak\ wgEncodeUwTfbsHct116CtcfStdPkRep1 HCT16 CTCF Pk 1 narrowPeak HCT-116 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 226 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HCT16 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HCT116 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHct116CtcfStdPkRep1\ type narrowPeak\ wgEncodeBroadHistoneHelas3H3k4me2StdSig HeLa-S3 H3K4m2 bigWig 0.040000 35817.640625 HeLa-S3 H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 226 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HeLa-S3 H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k4me2StdSig\ type bigWig 0.040000 35817.640625\ wgEncodeCshlLongRnaSeqHelas3CytosolPamJunctions HeS3 cyt pA- J bed 6 + HeLa-S3 cytosol polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 226 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 cytosol polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HeS3 cyt pA- J\ subGroups view=Junctions cellType=t2HELAS3 localization=CYTOSOL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHelas3CytosolPamJunctions\ type bed 6 +\ wgEncodeHaibTfbsH1hescE2f6V0422111RawRep2 hESC E2F6 V11 2 bigWig 1.000000 4742.000000 H1-hESC E2F6 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 226 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC E2F6 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC E2F6 V11 2\ subGroups view=RawSignal factor=E2F6 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescE2f6V0422111RawRep2\ type bigWig 1.000000 4742.000000\ wgEncodeRikenCageImr90CytosolPapAlnRep1 IMR9 cyto pA+ A 1 bam IMR90 cytosol polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 226 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 cytosol polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel IMR9 cyto pA+ A 1\ subGroups view=Alignments cellType=t2IMR90 localization=cytosol rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageImr90CytosolPapAlnRep1\ type bam\ wgEncodeSydhTfbsK562Gtf2bStdSig K562 GT2B Std bigWig 0.000000 5885.000000 K562 GTF2B Standard ChIP-seq Signal from ENCODE/SYDH 2 226 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 GTF2B Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 GT2B Std\ subGroups view=Signal factor=GTF2B cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Gtf2bStdSig\ type bigWig 0.000000 5885.000000\ wgEncodeAwgTfbsSydhK562CmycIfng6hUniPk K562+IFNg6h MYC narrowPeak K562 (IFNg6h) TFBS Uniform Peaks of c-Myc from ENCODE/Yale/Analysis 1 226 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNg6h) TFBS Uniform Peaks of c-Myc from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNg6h MYC\ subGroups tier=a10 cellType=a10K562 factor=MYC lab=Yale\ track wgEncodeAwgTfbsSydhK562CmycIfng6hUniPk\ wgEncodeCshlShortRnaSeqMcf7NucleusShorttotalMinusRep4 MCF7 nucl - 2 bigWig 1.000000 25205180.000000 MCF-7 nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 226 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel MCF7 nucl - 2\ subGroups view=MinusSignal cellType=t2MCF7 localization=NUCLEUS protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqMcf7NucleusShorttotalMinusRep4\ type bigWig 1.000000 25205180.000000\ wgEncodeOpenChromDnaseMedulloPk Medullo Pk narrowPeak Medullo DNaseI HS Peaks from ENCODE/Duke 3 226 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Medullo DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Medullo Pk\ subGroups view=Peaks cellType=t3MEDULLO treatment=zNONE\ track wgEncodeOpenChromDnaseMedulloPk\ type narrowPeak\ encTfChipPkENCFF459QKR GM12892 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in GM12892 from ENCODE 3 (ENCFF459QKR) 1 227 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in GM12892 from ENCODE 3 (ENCFF459QKR)\ parent encTfChipPk off\ shortLabel GM12892 POLR2A\ subGroups cellType=GM12892 factor=POLR2A\ track encTfChipPkENCFF459QKR\ wgEncodeUwHistoneGm06990H3k4me3StdHotspotsRep1 GM90 H3K4M3 Ht 1 broadPeak GM06990 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 227 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel GM90 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3GM06990 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k4me3StdHotspotsRep1\ type broadPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_ctss_fwd H9MelanocyticInduction_Day18Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_forward 0 227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep2%20%28H9EB-2%20d18%29.CNhs12832.12732-135H5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12732-135H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_tpm_fwd H9MelanocyticInduction_Day18Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_forward 1 227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep2%20%28H9EB-2%20d18%29.CNhs12832.12732-135H5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12732-135H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHaePkRep1 HAEpiC Pk 1 narrowPeak HAEpiC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 227 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAEpiC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HAEpiC Pk 1\ subGroups view=Peaks cellType=t3HAEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHaePkRep1\ type narrowPeak\ wgEncodeUwTfbsHct116CtcfStdRawRep1 HCT16 CTCF Sg 1 bigWig 1.000000 8816.000000 HCT-116 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 227 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HCT16 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HCT116 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHct116CtcfStdRawRep1\ type bigWig 1.000000 8816.000000\ wgEncodeBroadHistoneHelas3H3k4me3StdPk HeLa-S3 H3K4m3 broadPeak HeLa-S3 H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 227 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HeLa-S3 H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k4me3StdPk\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3CytosolLongnonpolyaMinusRawSigRep2 HeS3 cyt pA- - 2 bigWig 1.000000 4123325.000000 HeLa-S3 cytosol polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 227 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 cytosol polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeS3 cyt pA- - 2\ subGroups view=MinusSignal cellType=t2HELAS3 localization=CYTOSOL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3CytosolLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 4123325.000000\ wgEncodeHaibTfbsH1hescEgr1V0416102PkRep1 hESC Egr-1 V102 1 broadPeak H1-hESC Egr-1 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 227 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Egr-1 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC Egr-1 V102 1\ subGroups view=Peaks factor=EGR1 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescEgr1V0416102PkRep1\ type broadPeak\ wgEncodeRikenCageImr90CytosolPapAlnRep2 IMR9 cyto pA+ A 2 bam IMR90 cytosol polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 227 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 cytosol polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel IMR9 cyto pA+ A 2\ subGroups view=Alignments cellType=t2IMR90 localization=cytosol rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageImr90CytosolPapAlnRep2\ type bam\ wgEncodeSydhTfbsK562Gtf2f1ab28179IggrabPk K562 GT2F IgR narrowPeak K562 GTF2F1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 227 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 GTF2F1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 GT2F IgR\ subGroups view=Peaks factor=GTF2F1 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Gtf2f1ab28179IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Nfe2UniPk K562 NFE2 narrowPeak K562 TFBS Uniform Peaks of NF-E2 from ENCODE/Yale/Analysis 1 227 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of NF-E2 from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 NFE2\ subGroups tier=a10 cellType=a10K562 factor=NFE2 lab=Yale\ track wgEncodeAwgTfbsSydhK562Nfe2UniPk\ wgEncodeCshlShortRnaSeqMcf7NucleusShorttotalPlusRep3 MCF7 nucl + 1 bigWig 1.000000 4260655.000000 MCF-7 nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 227 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel MCF7 nucl + 1\ subGroups view=PlusSignal cellType=t2MCF7 localization=NUCLEUS protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqMcf7NucleusShorttotalPlusRep3\ type bigWig 1.000000 4260655.000000\ wgEncodeOpenChromDnaseMedulloSig Medullo DS bigWig 0.000000 1.186600 Medullo DNaseI HS Density Signal from ENCODE/Duke 2 227 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Medullo DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Medullo DS\ subGroups view=SIG cellType=t3MEDULLO treatment=zNONE\ track wgEncodeOpenChromDnaseMedulloSig\ type bigWig 0.000000 1.186600\ encTfChipPkENCFF713IVN GM12892 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in GM12892 from ENCODE 3 (ENCFF713IVN) 1 228 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TAF1 in GM12892 from ENCODE 3 (ENCFF713IVN)\ parent encTfChipPk off\ shortLabel GM12892 TAF1\ subGroups cellType=GM12892 factor=TAF1\ track encTfChipPkENCFF713IVN\ wgEncodeUwHistoneGm06990H3k4me3StdPkRep1 GM90 H3K4M3 Pk 1 narrowPeak GM06990 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 228 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel GM90 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3GM06990 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k4me3StdPkRep1\ type narrowPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_ctss_rev H9MelanocyticInduction_Day18Br2- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_reverse 0 228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep2%20%28H9EB-2%20d18%29.CNhs12832.12732-135H5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12732-135H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_tpm_rev H9MelanocyticInduction_Day18Br2- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_reverse 1 228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep2%20%28H9EB-2%20d18%29.CNhs12832.12732-135H5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12732-135H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHaeRawRep1 HAEpiC Sg 1 bigWig 1.000000 10900.000000 HAEpiC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 228 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HAEpiC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HAEpiC Sg 1\ subGroups view=zRSig cellType=t3HAEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHaeRawRep1\ type bigWig 1.000000 10900.000000\ wgEncodeUwTfbsHct116CtcfStdHotspotsRep2 HCT16 CTCF Ht 2 broadPeak HCT-116 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 228 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel HCT16 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3HCT116 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHct116CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneHelas3H3k4me3StdSig HeLa-S3 H3K4m3 bigWig 0.040000 25109.240234 HeLa-S3 H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 228 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HeLa-S3 H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k4me3StdSig\ type bigWig 0.040000 25109.240234\ wgEncodeCshlLongRnaSeqHelas3CytosolLongnonpolyaPlusRawSigRep2 HeS3 cyt pA- + 2 bigWig 1.000000 17458640.000000 HeLa-S3 cytosol polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 228 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 cytosol polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeS3 cyt pA- + 2\ subGroups view=PlusSignal cellType=t2HELAS3 localization=CYTOSOL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3CytosolLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 17458640.000000\ wgEncodeHaibTfbsH1hescEgr1V0416102RawRep1 hESC Egr-1 V102 1 bigWig 0.190460 186.556000 H1-hESC Egr-1 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 228 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Egr-1 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC Egr-1 V102 1\ subGroups view=RawSignal factor=EGR1 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescEgr1V0416102RawRep1\ type bigWig 0.190460 186.556000\ wgEncodeRikenCageImr90NucleusPapTssHmm IMR9 nucl pA+ bed 6 IMR90 nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 228 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel IMR9 nucl pA+\ subGroups view=TssHmm cellType=t2IMR90 localization=nucleus rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageImr90NucleusPapTssHmm\ type bed 6\ wgEncodeSydhTfbsK562Gtf2f1ab28179IggrabSig K562 GT2F IgR bigWig 1.000000 15471.000000 K562 GTF2F1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 228 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 GTF2F1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 GT2F IgR\ subGroups view=Signal factor=GTF2F1 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Gtf2f1ab28179IggrabSig\ type bigWig 1.000000 15471.000000\ wgEncodeAwgTfbsSydhK562NfyaUniPk K562 NFYA narrowPeak K562 TFBS Uniform Peaks of NF-YA from ENCODE/Stanford/Analysis 1 228 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of NF-YA from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel K562 NFYA\ subGroups tier=a10 cellType=a10K562 factor=NFYA lab=Stanford\ track wgEncodeAwgTfbsSydhK562NfyaUniPk\ wgEncodeCshlShortRnaSeqMcf7NucleusShorttotalPlusRep4 MCF7 nucl + 2 bigWig 1.000000 6463194.000000 MCF-7 nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 228 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel MCF7 nucl + 2\ subGroups view=PlusSignal cellType=t2MCF7 localization=NUCLEUS protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqMcf7NucleusShorttotalPlusRep4\ type bigWig 1.000000 6463194.000000\ wgEncodeOpenChromDnaseMedulloBaseOverlapSignal Medullo OS bigWig 0.000000 242.000000 Medullo DNaseI HS Overlap Signal from ENCODE/Duke 2 228 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Medullo DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Medullo OS\ subGroups view=SIGBO cellType=t3MEDULLO treatment=zNONE\ track wgEncodeOpenChromDnaseMedulloBaseOverlapSignal\ type bigWig 0.000000 242.000000\ encTfChipPkENCFF667URP GM12892 YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in GM12892 from ENCODE 3 (ENCFF667URP) 1 229 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of YY1 in GM12892 from ENCODE 3 (ENCFF667URP)\ parent encTfChipPk off\ shortLabel GM12892 YY1\ subGroups cellType=GM12892 factor=YY1\ track encTfChipPkENCFF667URP\ wgEncodeUwHistoneGm06990H3k4me3StdRawRep1 GM90 H3K4M3 Sg 1 bigWig 1.000000 1362.000000 GM06990 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 229 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel GM90 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3GM06990 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k4me3StdRawRep1\ type bigWig 1.000000 1362.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_ctss_fwd H9MelanocyticInduction_Day18Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_forward 0 229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep3%20%28H9EB-3%20d18%29.CNhs12914.12830-137A4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12830-137A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_tpm_fwd H9MelanocyticInduction_Day18Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_forward 1 229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep3%20%28H9EB-3%20d18%29.CNhs12914.12830-137A4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12830-137A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHaeHotspotsRep2 HAEpiC Ht 2 broadPeak HAEpiC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 229 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAEpiC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HAEpiC Ht 2\ subGroups view=Hot cellType=t3HAEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHaeHotspotsRep2\ type broadPeak\ wgEncodeUwTfbsHct116CtcfStdPkRep2 HCT16 CTCF Pk 2 narrowPeak HCT-116 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 229 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HCT16 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3HCT116 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHct116CtcfStdPkRep2\ type narrowPeak\ wgEncodeBroadHistoneHelas3H3k9acStdPk HeLa-S3 H3K9ac broadPeak HeLa-S3 H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 229 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HeLa-S3 H3K9ac\ subGroups view=Peaks factor=H3K09AC cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k9acStdPk\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3CytosolPapAlnRep1 HeS3 cyt pA+ A 1 bam HeLa-S3 cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 229 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeS3 cyt pA+ A 1\ subGroups view=Alignments cellType=t2HELAS3 localization=CYTOSOL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHelas3CytosolPapAlnRep1\ type bam\ wgEncodeHaibTfbsH1hescEgr1V0416102PkRep2 hESC Egr-1 V102 2 broadPeak H1-hESC Egr-1 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 229 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Egr-1 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC Egr-1 V102 2\ subGroups view=Peaks factor=EGR1 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescEgr1V0416102PkRep2\ type broadPeak\ wgEncodeRikenCageImr90NucleusPapPlusRawRep1 IMR9 nucl pA+ + 1 bigWig 1.000000 1385910.000000 IMR90 nucleus polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 229 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 nucleus polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel IMR9 nucl pA+ + 1\ subGroups view=PlusRawSignal cellType=t2IMR90 localization=nucleus rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageImr90NucleusPapPlusRawRep1\ type bigWig 1.000000 1385910.000000\ wgEncodeSydhTfbsK562Hcfc1nb10068209IggrabPk K562 HCFC1 IgR narrowPeak K562 HCFC1 (NB100-68209) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 229 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 HCFC1 (NB100-68209) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 HCFC1 IgR\ subGroups view=Peaks factor=HCFC1NB10068209 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Hcfc1nb10068209IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562NfybUniPk K562 NFYB narrowPeak K562 TFBS Uniform Peaks of NF-YB from ENCODE/Stanford/Analysis 1 229 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of NF-YB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 NFYB\ subGroups tier=a10 cellType=a10K562 factor=NFYB lab=Stanford\ track wgEncodeAwgTfbsSydhK562NfybUniPk\ wgEncodeCshlShortRnaSeqMcf7NucleusTapContigs MCF7 nucl TAP C bed 6 MCF-7 TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL 2 229 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel MCF7 nucl TAP C\ subGroups view=Contigs rep=Pooled cellType=t2MCF7 localization=NUCLEUS protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqMcf7NucleusTapContigs\ type bed 6\ wgEncodeOpenChromDnaseMedullod341Pk Medullo D341 Pk narrowPeak Medullo D341 DNaseI HS Peaks from ENCODE/Duke 3 229 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Medullo D341 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Medullo D341 Pk\ subGroups view=Peaks cellType=t3MEDULLOD341 treatment=zNONE\ track wgEncodeOpenChromDnaseMedullod341Pk\ type narrowPeak\ encTfChipPkENCFF445ATY GM13977 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM13977 from ENCODE 3 (ENCFF445ATY) 1 230 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM13977 from ENCODE 3 (ENCFF445ATY)\ parent encTfChipPk off\ shortLabel GM13977 CTCF\ subGroups cellType=GM13977 factor=CTCF\ track encTfChipPkENCFF445ATY\ wgEncodeUwHistoneGm06990H3k4me3StdHotspotsRep2 GM90 H3K4M3 Ht 2 broadPeak GM06990 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 230 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel GM90 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3GM06990 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k4me3StdHotspotsRep2\ type broadPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_ctss_rev H9MelanocyticInduction_Day18Br3- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_reverse 0 230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep3%20%28H9EB-3%20d18%29.CNhs12914.12830-137A4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12830-137A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_tpm_rev H9MelanocyticInduction_Day18Br3- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_reverse 1 230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep3%20%28H9EB-3%20d18%29.CNhs12914.12830-137A4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12830-137A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHaePkRep2 HAEpiC Pk 2 narrowPeak HAEpiC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 230 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAEpiC DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HAEpiC Pk 2\ subGroups view=Peaks cellType=t3HAEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHaePkRep2\ type narrowPeak\ wgEncodeUwTfbsHct116CtcfStdRawRep2 HCT16 CTCF Sg 2 bigWig 1.000000 8347.000000 HCT-116 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 230 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HCT16 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3HCT116 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHct116CtcfStdRawRep2\ type bigWig 1.000000 8347.000000\ wgEncodeBroadHistoneHelas3H3k9acStdSig HeLa-S3 H3K9ac bigWig 0.040000 22466.119141 HeLa-S3 H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 230 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HeLa-S3 H3K9ac\ subGroups view=Signal factor=H3K09AC cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k9acStdSig\ type bigWig 0.040000 22466.119141\ wgEncodeCshlLongRnaSeqHelas3CytosolPapAlnRep2 HeS3 cyt pA+ A 2 bam HeLa-S3 cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 230 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeS3 cyt pA+ A 2\ subGroups view=Alignments cellType=t2HELAS3 localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3CytosolPapAlnRep2\ type bam\ wgEncodeHaibTfbsH1hescEgr1V0416102RawRep2 hESC Egr-1 V102 2 bigWig 0.201167 244.016006 H1-hESC Egr-1 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 230 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Egr-1 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC Egr-1 V102 2\ subGroups view=RawSignal factor=EGR1 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescEgr1V0416102RawRep2\ type bigWig 0.201167 244.016006\ wgEncodeRikenCageImr90NucleusPapPlusRawRep2 IMR9 nucl pA+ + 2 bigWig 1.000000 3183440.000000 IMR90 nucleus polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 230 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 nucleus polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel IMR9 nucl pA+ + 2\ subGroups view=PlusRawSignal cellType=t2IMR90 localization=nucleus rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageImr90NucleusPapPlusRawRep2\ type bigWig 1.000000 3183440.000000\ wgEncodeSydhTfbsK562Hcfc1nb10068209IggrabSig K562 HCFC1 IgR bigWig 1.000000 15320.000000 K562 HCFC1 (NB100-68209) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 230 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 HCFC1 (NB100-68209) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 HCFC1 IgR\ subGroups view=Signal factor=HCFC1NB10068209 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Hcfc1nb10068209IggrabSig\ type bigWig 1.000000 15320.000000\ wgEncodeAwgTfbsSydhK562Tr4UcdUniPk K562 NR2C2 narrowPeak K562 TFBS Uniform Peaks of TR4 from ENCODE/USC/Analysis 1 230 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of TR4 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 NR2C2\ subGroups tier=a10 cellType=a10K562 factor=NR2C2 lab=USC\ track wgEncodeAwgTfbsSydhK562Tr4UcdUniPk\ wgEncodeCshlShortRnaSeqMcf7NucleusShorttotalTapMinusRep3 MCF7 nucl TAP - 1 bigWig 1.000000 19547114.000000 MCF-7 TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 230 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel MCF7 nucl TAP - 1\ subGroups view=MinusSignal cellType=t2MCF7 localization=NUCLEUS protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqMcf7NucleusShorttotalTapMinusRep3\ type bigWig 1.000000 19547114.000000\ wgEncodeOpenChromDnaseMedullod341Sig Medullo D341 DS bigWig 0.000000 1.422500 Medullo D341 DNaseI HS Density Signal from ENCODE/Duke 2 230 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Medullo D341 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Medullo D341 DS\ subGroups view=SIG cellType=t3MEDULLOD341 treatment=zNONE\ track wgEncodeOpenChromDnaseMedullod341Sig\ type bigWig 0.000000 1.422500\ encTfChipPkENCFF244DQW GM20000 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM20000 from ENCODE 3 (ENCFF244DQW) 1 231 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM20000 from ENCODE 3 (ENCFF244DQW)\ parent encTfChipPk off\ shortLabel GM20000 CTCF\ subGroups cellType=GM20000 factor=CTCF\ track encTfChipPkENCFF244DQW\ wgEncodeUwHistoneGm06990H3k4me3StdPkRep2 GM90 H3K4M3 Pk 2 narrowPeak GM06990 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 231 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel GM90 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3GM06990 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k4me3StdPkRep2\ type narrowPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_ctss_fwd H9MelanocyticInduction_Day21Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_forward 0 231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep1%20%28H9EB-1%20d21%29.CNhs12900.12635-134F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12635-134F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_tpm_fwd H9MelanocyticInduction_Day21Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_forward 1 231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep1%20%28H9EB-1%20d21%29.CNhs12900.12635-134F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12635-134F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHaeRawRep2 HAEpiC Sg 2 bigWig 1.000000 22758.000000 HAEpiC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 231 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HAEpiC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HAEpiC Sg 2\ subGroups view=zRSig cellType=t3HAEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHaeRawRep2\ type bigWig 1.000000 22758.000000\ wgEncodeUwTfbsHct116InputStdRawRep1 HCT16 In Sg 1 bigWig 1.000000 14872.000000 HCT-116 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 231 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HCT16 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HCT116 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHct116InputStdRawRep1\ type bigWig 1.000000 14872.000000\ wgEncodeBroadHistoneHelas3H3k09me3Pk HeLa-S3 H3K9m3 broadPeak HeLa-S3 H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 231 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HeLa-S3 H3K9m3\ subGroups view=Peaks factor=H3K09ME3 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k09me3Pk\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3CytosolPapContigs HeS3 cyt pA+ C bed 6 + HeLa-S3 cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 231 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HeS3 cyt pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HELAS3 localization=CYTOSOL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqHelas3CytosolPapContigs\ type bed 6 +\ wgEncodeHaibTfbsH1hescFosl1sc183V0416102PkRep1 hESC FOSL1 V102 1 broadPeak H1-hESC FOSL1 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 231 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC FOSL1 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC FOSL1 V102 1\ subGroups view=Peaks factor=FOSL1SC183 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescFosl1sc183V0416102PkRep1\ type broadPeak\ wgEncodeRikenCageImr90NucleusPapMinusRawRep1 IMR9 nucl pA+ - 1 bigWig 1.000000 214985.000000 IMR90 nucleus polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 231 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 nucleus polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel IMR9 nucl pA+ - 1\ subGroups view=MinusRawSignal cellType=t2IMR90 localization=nucleus rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageImr90NucleusPapMinusRawRep1\ type bigWig 1.000000 214985.000000\ wgEncodeSydhTfbsK562Hmgn3StdPk K562 HMGN Std narrowPeak K562 HMGN3 Standard ChIP-seq Peaks from ENCODE/SYDH 3 231 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 HMGN3 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 HMGN Std\ subGroups view=Peaks factor=HMGN3 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Hmgn3StdPk\ type narrowPeak\ wgEncodeAwgTfbsHaibK562Nr2f2sc271940V0422111UniPk K562 NR2F2 narrowPeak K562 TFBS Uniform Peaks of NR2F2_(SC-271940) from ENCODE/HudsonAlpha/Analysis 1 231 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of NR2F2_(SC-271940) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 NR2F2\ subGroups tier=a10 cellType=a10K562 factor=NR2F2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Nr2f2sc271940V0422111UniPk\ wgEncodeCshlShortRnaSeqMcf7NucleusShorttotalTapMinusRep4 MCF7 nucl TAP - 2 bigWig 1.000000 16231031.000000 MCF-7 TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 231 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel MCF7 nucl TAP - 2\ subGroups view=MinusSignal cellType=t2MCF7 localization=NUCLEUS protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqMcf7NucleusShorttotalTapMinusRep4\ type bigWig 1.000000 16231031.000000\ wgEncodeOpenChromDnaseMedullod341BaseOverlapSignal Medullo D341 OS bigWig 0.000000 220.000000 Medullo D341 DNaseI HS Overlap Signal from ENCODE/Duke 2 231 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Medullo D341 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Medullo D341 OS\ subGroups view=SIGBO cellType=t3MEDULLOD341 treatment=zNONE\ track wgEncodeOpenChromDnaseMedullod341BaseOverlapSignal\ type bigWig 0.000000 220.000000\ encTfChipPkENCFF221ZIG GM23248 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in GM23248 from ENCODE 3 (ENCFF221ZIG) 1 232 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in GM23248 from ENCODE 3 (ENCFF221ZIG)\ parent encTfChipPk off\ shortLabel GM23248 EZH2\ subGroups cellType=GM23248 factor=EZH2\ track encTfChipPkENCFF221ZIG\ wgEncodeUwHistoneGm06990H3k4me3StdRawRep2 GM90 H3K4M3 Sg 2 bigWig 1.000000 2227.000000 GM06990 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 232 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel GM90 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3GM06990 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k4me3StdRawRep2\ type bigWig 1.000000 2227.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_ctss_rev H9MelanocyticInduction_Day21Br1- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_reverse 0 232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep1%20%28H9EB-1%20d21%29.CNhs12900.12635-134F7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12635-134F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_tpm_rev H9MelanocyticInduction_Day21Br1- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_reverse 1 232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep1%20%28H9EB-1%20d21%29.CNhs12900.12635-134F7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12635-134F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHbmecHotspotsRep1 HBMEC Ht 1 broadPeak HBMEC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 232 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBMEC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HBMEC Ht 1\ subGroups view=Hot cellType=t3HBMEC rep=rep1 treatment=None\ track wgEncodeUwDnaseHbmecHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHelas3H3k09me3Sig HeLa-S3 H3K9m3 bigWig 0.040000 59255.601562 HeLa-S3 H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 232 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HeLa-S3 H3K9m3\ subGroups view=Signal factor=H3K09ME3 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k09me3Sig\ type bigWig 0.040000 59255.601562\ wgEncodeUwTfbsHeeCtcfStdHotspotsRep1 HEpC CTCF Ht 1 broadPeak HEEpIC CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 232 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpIC CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HEpC CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HEEPIC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHeeCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3CytosolPapJunctions HeS3 cyt pA+ J bed 6 + HeLa-S3 cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 232 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HeS3 cyt pA+ J\ subGroups view=Junctions cellType=t2HELAS3 localization=CYTOSOL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHelas3CytosolPapJunctions\ type bed 6 +\ wgEncodeHaibTfbsH1hescFosl1sc183V0416102RawRep1 hESC FOSL1 V102 1 bigWig 0.318537 227.912994 H1-hESC FOSL1 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 232 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC FOSL1 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC FOSL1 V102 1\ subGroups view=RawSignal factor=FOSL1SC183 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescFosl1sc183V0416102RawRep1\ type bigWig 0.318537 227.912994\ wgEncodeRikenCageImr90NucleusPapMinusRawRep2 IMR9 nucl pA+ - 2 bigWig 1.000000 459987.000000 IMR90 nucleus polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 232 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 nucleus polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel IMR9 nucl pA+ - 2\ subGroups view=MinusRawSignal cellType=t2IMR90 localization=nucleus rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageImr90NucleusPapMinusRawRep2\ type bigWig 1.000000 459987.000000\ wgEncodeSydhTfbsK562Hmgn3StdSig K562 HMGN Std bigWig 0.000000 7780.600098 K562 HMGN3 Standard ChIP-seq Signal from ENCODE/SYDH 2 232 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 HMGN3 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 HMGN Std\ subGroups view=Signal factor=HMGN3 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Hmgn3StdSig\ type bigWig 0.000000 7780.600098\ wgEncodeAwgTfbsSydhK562Nrf1IggrabUniPk K562 NRF1 narrowPeak K562 TFBS Uniform Peaks of Nrf1 from ENCODE/Stanford/Analysis 1 232 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Nrf1 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 NRF1\ subGroups tier=a10 cellType=a10K562 factor=NRF1 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Nrf1IggrabUniPk\ wgEncodeCshlShortRnaSeqMcf7NucleusShorttotalTapPlusRep3 MCF7 nucl TAP + 1 bigWig 1.000000 25153132.000000 MCF-7 TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 232 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel MCF7 nucl TAP + 1\ subGroups view=PlusSignal cellType=t2MCF7 localization=NUCLEUS protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqMcf7NucleusShorttotalTapPlusRep3\ type bigWig 1.000000 25153132.000000\ wgEncodeOpenChromDnaseMel2183Pk Mel 2183 Pk narrowPeak Mel 2183 DNaseI HS Peaks from ENCODE/Duke 3 232 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Mel 2183 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Mel 2183 Pk\ subGroups view=Peaks cellType=t3MEL2183 treatment=zNONE\ track wgEncodeOpenChromDnaseMel2183Pk\ type narrowPeak\ encTfChipPkENCFF760HUV GM23338 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM23338 from ENCODE 3 (ENCFF760HUV) 1 233 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM23338 from ENCODE 3 (ENCFF760HUV)\ parent encTfChipPk off\ shortLabel GM23338 CTCF 1\ subGroups cellType=GM23338 factor=CTCF\ track encTfChipPkENCFF760HUV\ wgEncodeUwHistoneGm06990H3k27me3StdHotspotsRep1 GM90 H3K27M3 Ht 1 broadPeak GM06990 H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 233 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel GM90 H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t3GM06990 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k27me3StdHotspotsRep1\ type broadPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_ctss_fwd H9MelanocyticInduction_Day21Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_forward 0 233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep2%20%28H9EB-2%20d21%29.CNhs12833.12733-135H6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12733-135H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_tpm_fwd H9MelanocyticInduction_Day21Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_forward 1 233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep2%20%28H9EB-2%20d21%29.CNhs12833.12733-135H6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12733-135H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHbmecPkRep1 HBMEC Pk 1 narrowPeak HBMEC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 233 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBMEC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HBMEC Pk 1\ subGroups view=Peaks cellType=t3HBMEC rep=rep1 treatment=None\ track wgEncodeUwDnaseHbmecPkRep1\ type narrowPeak\ wgEncodeBroadHistoneHelas3H3k27acStdPk HeLa-S3 H3K27ac broadPeak HeLa-S3 H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 233 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HeLa-S3 H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k27acStdPk\ type broadPeak\ wgEncodeUwTfbsHeeCtcfStdPkRep1 HEpC CTCF Pk 1 narrowPeak HEEpIC CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 233 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpIC CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HEpC CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HEEPIC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHeeCtcfStdPkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHelas3CytosolPapMinusRawSigRep1 HeS3 cyt pA+ - 1 bigWig 1.000000 723030.000000 HeLa-S3 cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 233 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeS3 cyt pA+ - 1\ subGroups view=MinusSignal cellType=t2HELAS3 localization=CYTOSOL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHelas3CytosolPapMinusRawSigRep1\ type bigWig 1.000000 723030.000000\ wgEncodeHaibTfbsH1hescFosl1sc183V0416102PkRep2 hESC FOSL1 V102 2 broadPeak H1-hESC FOSL1 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 233 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC FOSL1 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC FOSL1 V102 2\ subGroups view=Peaks factor=FOSL1SC183 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescFosl1sc183V0416102PkRep2\ type broadPeak\ wgEncodeRikenCageImr90NucleusPapAlnRep1 IMR9 nucl pA+ A 1 bam IMR90 nucleus polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 233 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 nucleus polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel IMR9 nucl pA+ A 1\ subGroups view=Alignments cellType=t2IMR90 localization=nucleus rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageImr90NucleusPapAlnRep1\ type bam\ wgEncodeSydhTfbsK562Ini1IggmusPk K562 INI1 IgM narrowPeak K562 INI1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 233 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 INI1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 INI1 IgM\ subGroups view=Peaks factor=INI1 cellType=t1K562 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsK562Ini1IggmusPk\ type narrowPeak\ wgEncodeAwgTfbsBroadK562Phf8a301772aUniPk K562 PHF8 narrowPeak K562 TFBS Uniform Peaks of PHF8_(A301-772A) from ENCODE/Broad/Analysis 1 233 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of PHF8_(A301-772A) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 PHF8\ subGroups tier=a10 cellType=a10K562 factor=PHF8 lab=Broad\ track wgEncodeAwgTfbsBroadK562Phf8a301772aUniPk\ wgEncodeCshlShortRnaSeqMcf7NucleusShorttotalTapPlusRep4 MCF7 nucl TAP + 2 bigWig 1.000000 21517840.000000 MCF-7 TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 233 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel MCF7 nucl TAP + 2\ subGroups view=PlusSignal cellType=t2MCF7 localization=NUCLEUS protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqMcf7NucleusShorttotalTapPlusRep4\ type bigWig 1.000000 21517840.000000\ wgEncodeOpenChromDnaseMel2183Sig Mel 2183 DS bigWig 0.000000 1.165000 Mel 2183 DNaseI HS Density Signal from ENCODE/Duke 2 233 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Mel 2183 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Mel 2183 DS\ subGroups view=SIG cellType=t3MEL2183 treatment=zNONE\ track wgEncodeOpenChromDnaseMel2183Sig\ type bigWig 0.000000 1.165000\ wgEncodeCshlShortRnaSeqMonocd14CellTapContigs CD14 cell TAP C bed 6 CD14+ TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 234 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD14+ TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel CD14 cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t2MONOCYTESCD14 localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqMonocd14CellTapContigs\ type bed 6\ encTfChipPkENCFF765BRD GM23338 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM23338 from ENCODE 3 (ENCFF765BRD) 1 234 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM23338 from ENCODE 3 (ENCFF765BRD)\ parent encTfChipPk off\ shortLabel GM23338 CTCF 2\ subGroups cellType=GM23338 factor=CTCF\ track encTfChipPkENCFF765BRD\ wgEncodeUwHistoneGm06990H3k27me3StdPkRep1 GM90 H3K27M3 Pk 1 narrowPeak GM06990 H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 234 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel GM90 H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t3GM06990 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k27me3StdPkRep1\ type narrowPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_ctss_rev H9MelanocyticInduction_Day21Br2- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_reverse 0 234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep2%20%28H9EB-2%20d21%29.CNhs12833.12733-135H6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12733-135H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_tpm_rev H9MelanocyticInduction_Day21Br2- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_reverse 1 234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep2%20%28H9EB-2%20d21%29.CNhs12833.12733-135H6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12733-135H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHbmecRawRep1 HBMEC Sg 1 bigWig 1.000000 44160.000000 HBMEC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 234 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HBMEC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HBMEC Sg 1\ subGroups view=zRSig cellType=t3HBMEC rep=rep1 treatment=None\ track wgEncodeUwDnaseHbmecRawRep1\ type bigWig 1.000000 44160.000000\ wgEncodeBroadHistoneHelas3H3k27acStdSig HeLa-S3 H3K27ac bigWig 0.040000 23354.720703 HeLa-S3 H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 234 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HeLa-S3 H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k27acStdSig\ type bigWig 0.040000 23354.720703\ wgEncodeUwTfbsHeeCtcfStdRawRep1 HEpC CTCF Sg 1 bigWig 1.000000 8672.000000 HEEpIC CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 234 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEEpIC CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HEpC CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HEEPIC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHeeCtcfStdRawRep1\ type bigWig 1.000000 8672.000000\ wgEncodeCshlLongRnaSeqHelas3CytosolPapMinusRawSigRep2 HeS3 cyt pA+ - 2 bigWig 1.000000 292030.000000 HeLa-S3 cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 234 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeS3 cyt pA+ - 2\ subGroups view=MinusSignal cellType=t2HELAS3 localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3CytosolPapMinusRawSigRep2\ type bigWig 1.000000 292030.000000\ wgEncodeHaibTfbsH1hescFosl1sc183V0416102RawRep2 hESC FOSL1 V102 2 bigWig 0.245718 232.817993 H1-hESC FOSL1 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 234 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC FOSL1 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC FOSL1 V102 2\ subGroups view=RawSignal factor=FOSL1SC183 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescFosl1sc183V0416102RawRep2\ type bigWig 0.245718 232.817993\ wgEncodeRikenCageImr90NucleusPapAlnRep2 IMR9 nucl pA+ A 2 bam IMR90 nucleus polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 234 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 nucleus polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel IMR9 nucl pA+ A 2\ subGroups view=Alignments cellType=t2IMR90 localization=nucleus rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageImr90NucleusPapAlnRep2\ type bam\ wgEncodeSydhTfbsK562Ini1IggmusSig K562 INI1 IgM bigWig 0.000000 9341.500000 K562 INI1 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 234 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 INI1 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 INI1 IgM\ subGroups view=Signal factor=INI1 cellType=t1K562 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsK562Ini1IggmusSig\ type bigWig 0.000000 9341.500000\ wgEncodeAwgTfbsHaibK562Pmlsc71910V0422111UniPk K562 PML narrowPeak K562 TFBS Uniform Peaks of PML_(SC-71910) from ENCODE/HudsonAlpha/Analysis 1 234 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of PML_(SC-71910) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 PML\ subGroups tier=a10 cellType=a10K562 factor=PML lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Pmlsc71910V0422111UniPk\ wgEncodeOpenChromDnaseMel2183BaseOverlapSignal Mel 2183 OS bigWig 0.000000 197.000000 Mel 2183 DNaseI HS Overlap Signal from ENCODE/Duke 2 234 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Mel 2183 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Mel 2183 OS\ subGroups view=SIGBO cellType=t3MEL2183 treatment=zNONE\ track wgEncodeOpenChromDnaseMel2183BaseOverlapSignal\ type bigWig 0.000000 197.000000\ wgEncodeCshlShortRnaSeqMonocd14CellTapMinusRep1 CD14 cell TAP - 1 bigWig 1.000000 2294792.000000 CD14+ TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 235 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD14+ TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel CD14 cell TAP - 1\ subGroups view=MinusSignal cellType=t2MONOCYTESCD14 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqMonocd14CellTapMinusRep1\ type bigWig 1.000000 2294792.000000\ encTfChipPkENCFF276KYQ GM23338 ETS1 narrowPeak Transcription Factor ChIP-seq Peaks of ETS1 in GM23338 from ENCODE 3 (ENCFF276KYQ) 1 235 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ETS1 in GM23338 from ENCODE 3 (ENCFF276KYQ)\ parent encTfChipPk off\ shortLabel GM23338 ETS1\ subGroups cellType=GM23338 factor=ETS1\ track encTfChipPkENCFF276KYQ\ wgEncodeUwHistoneGm06990H3k27me3StdRawRep1 GM90 H3K27M3 Sg 1 bigWig 1.000000 3769.000000 GM06990 H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 235 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel GM90 H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t3GM06990 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k27me3StdRawRep1\ type bigWig 1.000000 3769.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_ctss_fwd H9MelanocyticInduction_Day21Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_forward 0 235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep3%20%28H9EB-3%20d21%29.CNhs12915.12831-137A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12831-137A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_tpm_fwd H9MelanocyticInduction_Day21Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_forward 1 235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep3%20%28H9EB-3%20d21%29.CNhs12915.12831-137A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12831-137A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHbmecHotspotsRep2 HBMEC Ht 2 broadPeak HBMEC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 235 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBMEC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HBMEC Ht 2\ subGroups view=Hot cellType=t3HBMEC rep=rep2 treatment=None\ track wgEncodeUwDnaseHbmecHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneHelas3H3k27me3StdPk HeLa-S3 H3K27m3 broadPeak HeLa-S3 H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 235 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HeLa-S3 H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k27me3StdPk\ type broadPeak\ wgEncodeUwTfbsHeeCtcfStdHotspotsRep2 HEpC CTCF Ht 2 broadPeak HEEpIC CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 235 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpIC CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HEpC CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3HEEPIC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHeeCtcfStdHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3CytosolPapPlusRawSigRep1 HeS3 cyt pA+ + 1 bigWig 1.000000 1074284.000000 HeLa-S3 cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 235 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeS3 cyt pA+ + 1\ subGroups view=PlusSignal cellType=t2HELAS3 localization=CYTOSOL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHelas3CytosolPapPlusRawSigRep1\ type bigWig 1.000000 1074284.000000\ wgEncodeHaibTfbsH1hescGabpPcr1xPkRep1 hESC GABP PCR1 1 broadPeak H1-hESC GABP PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 235 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC GABP PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel hESC GABP PCR1 1\ subGroups view=Peaks factor=GABP cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescGabpPcr1xPkRep1\ type broadPeak\ wgEncodeRikenCageImr90CellPapTssHmm IMR9 cell pA+ bed 6 IMR90 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 235 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel IMR9 cell pA+\ subGroups view=TssHmm cellType=t2IMR90 localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageImr90CellPapTssHmm\ type bed 6\ wgEncodeSydhTfbsK562Irf1Ifna30StdPk K562 IFa3 IRF1 Sd narrowPeak K562 IRF1 Standard IFNa 30min ChIP-seq Peaks from ENCODE/SYDH 3 235 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 IRF1 Standard IFNa 30min ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFa3 IRF1 Sd\ subGroups view=Peaks factor=IRF1 cellType=t1K562 control=STD treatment=IFNa30\ track wgEncodeSydhTfbsK562Irf1Ifna30StdPk\ type narrowPeak\ wgEncodeAwgTfbsBroadK562Pol2bUniPk K562 POLR2A b narrowPeak K562 TFBS Uniform Peaks of Pol2(b) from ENCODE/Broad/Analysis 1 235 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Pol2(b) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 POLR2A b\ subGroups tier=a10 cellType=a10K562 factor=POLR2A lab=Broad\ track wgEncodeAwgTfbsBroadK562Pol2bUniPk\ wgEncodeOpenChromDnaseMelanoPk Melano Pk narrowPeak Melano DNaseI HS Peaks from ENCODE/Duke 3 235 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Melano DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Melano Pk\ subGroups view=Peaks cellType=t3MELANO treatment=zNONE\ track wgEncodeOpenChromDnaseMelanoPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqMonocd14CellTapMinusRep2 CD14 cell TAP - 2 bigWig 1.000000 6453896.000000 CD14+ TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 236 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD14+ TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel CD14 cell TAP - 2\ subGroups view=MinusSignal cellType=t2MONOCYTESCD14 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqMonocd14CellTapMinusRep2\ type bigWig 1.000000 6453896.000000\ encTfChipPkENCFF891UNY GM23338 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in GM23338 from ENCODE 3 (ENCFF891UNY) 1 236 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in GM23338 from ENCODE 3 (ENCFF891UNY)\ parent encTfChipPk off\ shortLabel GM23338 EZH2\ subGroups cellType=GM23338 factor=EZH2\ track encTfChipPkENCFF891UNY\ wgEncodeUwHistoneGm06990H3k27me3StdHotspotsRep2 GM90 H3K27M3 Ht 2 broadPeak GM06990 H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 236 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel GM90 H3K27M3 Ht 2\ subGroups view=Hot factor=H3K27ME3 cellType=t3GM06990 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k27me3StdHotspotsRep2\ type broadPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_ctss_rev H9MelanocyticInduction_Day21Br3- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_reverse 0 236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep3%20%28H9EB-3%20d21%29.CNhs12915.12831-137A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12831-137A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_tpm_rev H9MelanocyticInduction_Day21Br3- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_reverse 1 236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep3%20%28H9EB-3%20d21%29.CNhs12915.12831-137A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12831-137A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHbmecPkRep2 HBMEC Pk 2 narrowPeak HBMEC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 236 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBMEC DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HBMEC Pk 2\ subGroups view=Peaks cellType=t3HBMEC rep=rep2 treatment=None\ track wgEncodeUwDnaseHbmecPkRep2\ type narrowPeak\ wgEncodeBroadHistoneHelas3H3k27me3StdSig HeLa-S3 H3K27m3 bigWig 0.040000 24157.039062 HeLa-S3 H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 236 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HeLa-S3 H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k27me3StdSig\ type bigWig 0.040000 24157.039062\ wgEncodeUwTfbsHeeCtcfStdPkRep2 HEpC CTCF Pk 2 narrowPeak HEEpIC CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 236 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpIC CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HEpC CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3HEEPIC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHeeCtcfStdPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHelas3CytosolPapPlusRawSigRep2 HeS3 cyt pA+ + 2 bigWig 1.000000 620754.000000 HeLa-S3 cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 236 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeS3 cyt pA+ + 2\ subGroups view=PlusSignal cellType=t2HELAS3 localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3CytosolPapPlusRawSigRep2\ type bigWig 1.000000 620754.000000\ wgEncodeHaibTfbsH1hescGabpPcr1xRawRep1 hESC GABP PCR1 1 bigWig 0.168150 175.423004 H1-hESC GABP PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 236 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC GABP PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel hESC GABP PCR1 1\ subGroups view=RawSignal factor=GABP cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescGabpPcr1xRawRep1\ type bigWig 0.168150 175.423004\ wgEncodeRikenCageImr90CellPapPlusRawRep1 IMR9 cell pA+ + 1 bigWig 1.000000 321802.000000 IMR90 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 236 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel IMR9 cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t2IMR90 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageImr90CellPapPlusRawRep1\ type bigWig 1.000000 321802.000000\ wgEncodeSydhTfbsK562Irf1Ifna30StdSig K562 IFa3 IRF1 Sd bigWig 0.000000 6434.399902 K562 IRF1 Standard IFNa 30min ChIP-seq Signal from ENCODE/SYDH 2 236 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 IRF1 Standard IFNa 30min ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFa3 IRF1 Sd\ subGroups view=Signal factor=IRF1 cellType=t1K562 control=STD treatment=IFNa30\ track wgEncodeSydhTfbsK562Irf1Ifna30StdSig\ type bigWig 0.000000 6434.399902\ wgEncodeAwgTfbsHaibK562Pol24h8V0416101UniPk K562 POLR2A h narrowPeak K562 TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis 1 236 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel K562 POLR2A h\ subGroups tier=a10 cellType=a10K562 factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Pol24h8V0416101UniPk\ wgEncodeOpenChromDnaseMelanoSig Melano DS bigWig 0.000000 1.470500 Melano DNaseI HS Density Signal from ENCODE/Duke 2 236 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Melano DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Melano DS\ subGroups view=SIG cellType=t3MELANO treatment=zNONE\ track wgEncodeOpenChromDnaseMelanoSig\ type bigWig 0.000000 1.470500\ wgEncodeCshlShortRnaSeqMonocd14CellTapPlusRep1 CD14 cell TAP + 1 bigWig 1.000000 2291643.000000 CD14+ TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 237 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD14+ TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel CD14 cell TAP + 1\ subGroups view=PlusSignal cellType=t2MONOCYTESCD14 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqMonocd14CellTapPlusRep1\ type bigWig 1.000000 2291643.000000\ encTfChipPkENCFF735WFO GM23338 NANOG narrowPeak Transcription Factor ChIP-seq Peaks of NANOG in GM23338 from ENCODE 3 (ENCFF735WFO) 1 237 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NANOG in GM23338 from ENCODE 3 (ENCFF735WFO)\ parent encTfChipPk off\ shortLabel GM23338 NANOG\ subGroups cellType=GM23338 factor=NANOG\ track encTfChipPkENCFF735WFO\ wgEncodeUwHistoneGm06990H3k27me3StdPkRep2 GM90 H3K27M3 Pk 2 narrowPeak GM06990 H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 237 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel GM90 H3K27M3 Pk 2\ subGroups view=Peaks factor=H3K27ME3 cellType=t3GM06990 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k27me3StdPkRep2\ type narrowPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_ctss_fwd H9MelanocyticInduction_Day24Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_forward 0 237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep1%20%28H9EB-1%20d24%29.CNhs12901.12636-134F8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12636-134F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_tpm_fwd H9MelanocyticInduction_Day24Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_forward 1 237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep1%20%28H9EB-1%20d24%29.CNhs12901.12636-134F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12636-134F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHbmecRawRep2 HBMEC Sg 2 bigWig 1.000000 18604.000000 HBMEC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 237 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HBMEC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HBMEC Sg 2\ subGroups view=zRSig cellType=t3HBMEC rep=rep2 treatment=None\ track wgEncodeUwDnaseHbmecRawRep2\ type bigWig 1.000000 18604.000000\ wgEncodeBroadHistoneHelas3H3k36me3StdPk HeLa-S3 H3K36m3 broadPeak HeLa-S3 H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 237 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HeLa-S3 H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k36me3StdPk\ type broadPeak\ wgEncodeUwTfbsHeeCtcfStdRawRep2 HEpC CTCF Sg 2 bigWig 1.000000 4700.000000 HEEpIC CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 237 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEEpIC CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HEpC CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3HEEPIC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHeeCtcfStdRawRep2\ type bigWig 1.000000 4700.000000\ wgEncodeCshlLongRnaSeqHelas3NucleusLongnonpolyaAlnRep1 HeS3 nuc pA- A 1 bam HeLa-S3 nucleus polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 237 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 nucleus polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeS3 nuc pA- A 1\ subGroups view=Alignments cellType=t2HELAS3 localization=NUCLEUS rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHelas3NucleusLongnonpolyaAlnRep1\ type bam\ wgEncodeHaibTfbsH1hescGabpPcr1xPkRep2 hESC GABP PCR1 2 broadPeak H1-hESC GABP PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 237 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC GABP PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel hESC GABP PCR1 2\ subGroups view=Peaks factor=GABP cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescGabpPcr1xPkRep2\ type broadPeak\ wgEncodeRikenCageImr90CellPapPlusRawRep2 IMR9 cell pA+ + 2 bigWig 1.000000 284551.000000 IMR90 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 237 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel IMR9 cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t2IMR90 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageImr90CellPapPlusRawRep2\ type bigWig 1.000000 284551.000000\ wgEncodeSydhTfbsK562Irf1Ifna6hStdPk K562 IFa6 IRF1 Sd narrowPeak K562 IRF1 Standard IFNa 6hrs ChIP-seq Peaks from ENCODE/SYDH 3 237 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 IRF1 Standard IFNa 6hrs ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFa6 IRF1 Sd\ subGroups view=Peaks factor=IRF1 cellType=t1K562 control=STD treatment=IFNa6h\ track wgEncodeSydhTfbsK562Irf1Ifna6hStdPk\ type narrowPeak\ wgEncodeAwgTfbsHaibK562Pol2V0416101UniPk K562 POLR2A h2 narrowPeak K562 TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis 1 237 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 POLR2A h2\ subGroups tier=a10 cellType=a10K562 factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Pol2V0416101UniPk\ wgEncodeOpenChromDnaseMelanoBaseOverlapSignal Melano OS bigWig 0.000000 412.000000 Melano DNaseI HS Overlap Signal from ENCODE/Duke 2 237 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Melano DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Melano OS\ subGroups view=SIGBO cellType=t3MELANO treatment=zNONE\ track wgEncodeOpenChromDnaseMelanoBaseOverlapSignal\ type bigWig 0.000000 412.000000\ wgEncodeCshlShortRnaSeqMonocd14CellTapPlusRep2 CD14 cell TAP + 2 bigWig 1.000000 1850105.000000 CD14+ TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 238 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD14+ TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel CD14 cell TAP + 2\ subGroups view=PlusSignal cellType=t2MONOCYTESCD14 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqMonocd14CellTapPlusRep2\ type bigWig 1.000000 1850105.000000\ encTfChipPkENCFF238TOS GM23338 REST narrowPeak Transcription Factor ChIP-seq Peaks of REST in GM23338 from ENCODE 3 (ENCFF238TOS) 1 238 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in GM23338 from ENCODE 3 (ENCFF238TOS)\ parent encTfChipPk off\ shortLabel GM23338 REST\ subGroups cellType=GM23338 factor=REST\ track encTfChipPkENCFF238TOS\ wgEncodeUwHistoneGm06990H3k27me3StdRawRep2 GM90 H3K27M3 Sg 2 bigWig 1.000000 3746.000000 GM06990 H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 238 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel GM90 H3K27M3 Sg 2\ subGroups view=zRSig factor=H3K27ME3 cellType=t3GM06990 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k27me3StdRawRep2\ type bigWig 1.000000 3746.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_ctss_rev H9MelanocyticInduction_Day24Br1- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_reverse 0 238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep1%20%28H9EB-1%20d24%29.CNhs12901.12636-134F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12636-134F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_tpm_rev H9MelanocyticInduction_Day24Br1- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_reverse 1 238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep1%20%28H9EB-1%20d24%29.CNhs12901.12636-134F8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12636-134F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHbvpHotspotsRep1 HBVP Ht 1 broadPeak HBVP DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 238 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBVP DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel HBVP Ht 1\ subGroups view=Hot cellType=t3HBVP rep=rep1 treatment=None\ track wgEncodeUwDnaseHbvpHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHelas3H3k36me3StdSig HeLa-S3 H3K36m3 bigWig 0.040000 40261.800781 HeLa-S3 H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 238 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HeLa-S3 H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k36me3StdSig\ type bigWig 0.040000 40261.800781\ wgEncodeUwTfbsHeeInputStdRawRep1 HEpC In Sg 1 bigWig 1.000000 6633.000000 HEEpIC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 238 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEEpIC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HEpC In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HEEPIC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHeeInputStdRawRep1\ type bigWig 1.000000 6633.000000\ wgEncodeCshlLongRnaSeqHelas3NucleusLongnonpolyaAlnRep2 HeS3 nuc pA- A 2 bam HeLa-S3 nucleus polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 238 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 nucleus polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeS3 nuc pA- A 2\ subGroups view=Alignments cellType=t2HELAS3 localization=NUCLEUS rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3NucleusLongnonpolyaAlnRep2\ type bam\ wgEncodeHaibTfbsH1hescGabpPcr1xRawRep2 hESC GABP PCR1 2 bigWig 0.319893 142.751999 H1-hESC GABP PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 238 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC GABP PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel hESC GABP PCR1 2\ subGroups view=RawSignal factor=GABP cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescGabpPcr1xRawRep2\ type bigWig 0.319893 142.751999\ wgEncodeRikenCageImr90CellPapMinusRawRep1 IMR9 cell pA+ - 1 bigWig 1.000000 193625.000000 IMR90 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 238 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel IMR9 cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t2IMR90 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageImr90CellPapMinusRawRep1\ type bigWig 1.000000 193625.000000\ wgEncodeSydhTfbsK562Irf1Ifna6hStdSig K562 IFa6 IRF1 Sd bigWig 1.000000 22724.000000 K562 IRF1 Standard IFNa 6hrs ChIP-seq Signal from ENCODE/SYDH 2 238 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 IRF1 Standard IFNa 6hrs ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFa6 IRF1 Sd\ subGroups view=Signal factor=IRF1 cellType=t1K562 control=STD treatment=IFNa6h\ track wgEncodeSydhTfbsK562Irf1Ifna6hStdSig\ type bigWig 1.000000 22724.000000\ wgEncodeAwgTfbsSydhK562Pol2IggmusUniPk K562 POLR2A s narrowPeak K562 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis 1 238 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 POLR2A s\ subGroups tier=a10 cellType=a10K562 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhK562Pol2IggmusUniPk\ wgEncodeOpenChromDnaseMyometrPk Myometr Pk narrowPeak Myometr DNaseI HS Peaks from ENCODE/Duke 3 238 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Myometr DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Myometr Pk\ subGroups view=Peaks cellType=t3MYOMETR treatment=zNONE\ track wgEncodeOpenChromDnaseMyometrPk\ type narrowPeak\ wgEncodeUwHistoneGm06990H3k36me3StdHotspotsRep1 GM90 H3K36M3 Ht 1 broadPeak GM06990 H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 239 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel GM90 H3K36M3 Ht 1\ subGroups view=Hot factor=H3K36ME3 cellType=t3GM06990 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k36me3StdHotspotsRep1\ type broadPeak\ encTfChipPkENCFF254HZM H1-hESC ASH2L narrowPeak Transcription Factor ChIP-seq Peaks of ASH2L in H1-hESC from ENCODE 3 (ENCFF254HZM) 1 239 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of ASH2L in H1-hESC from ENCODE 3 (ENCFF254HZM)\ parent encTfChipPk off\ shortLabel H1-hESC ASH2L\ subGroups cellType=H1-hESC factor=ASH2L\ track encTfChipPkENCFF254HZM\ wgEncodeUwTfbsHek293CtcfStdHotspotsRep1 H293 CTCF Ht 1 broadPeak HEK293 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 239 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel H293 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HEK293 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHek293CtcfStdHotspotsRep1\ type broadPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_ctss_fwd H9MelanocyticInduction_Day24Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_forward 0 239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep2%20%28H9EB-2%20d24%29.CNhs12834.12734-135H7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12734-135H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_tpm_fwd H9MelanocyticInduction_Day24Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_forward 1 239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep2%20%28H9EB-2%20d24%29.CNhs12834.12734-135H7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12734-135H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHbvpPkRep1 HBVP Pk 1 narrowPeak HBVP DNaseI HS Peaks Rep 1 from ENCODE/UW 1 239 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBVP DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HBVP Pk 1\ subGroups view=Peaks cellType=t3HBVP rep=rep1 treatment=None\ track wgEncodeUwDnaseHbvpPkRep1\ type narrowPeak\ wgEncodeBroadHistoneHelas3H3k79me2StdPk HeLa-S3 H3K79m2 broadPeak HeLa-S3 H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 239 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HeLa-S3 H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k79me2StdPk\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3NucleusPamContigs HeS3 nuc pA- C bed 6 + HeLa-S3 nucleus polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 239 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 nucleus polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HeS3 nuc pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HELAS3 localization=NUCLEUS rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqHelas3NucleusPamContigs\ type bed 6 +\ wgEncodeHaibTfbsH1hescHdac2sc6296V0416102PkRep1 hESC HDAC2 V102 1 broadPeak H1-hESC HDAC2 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 239 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC HDAC2 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC HDAC2 V102 1\ subGroups view=Peaks factor=HDAC2SC6296 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescHdac2sc6296V0416102PkRep1\ type broadPeak\ wgEncodeRikenCageImr90CellPapMinusRawRep2 IMR9 cell pA+ - 2 bigWig 1.000000 297435.000000 IMR90 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 239 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel IMR9 cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t2IMR90 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageImr90CellPapMinusRawRep2\ type bigWig 1.000000 297435.000000\ wgEncodeSydhTfbsK562Irf1Ifng30StdPk K562 IFg3 IRF1 Sd narrowPeak K562 IRF1 Standard IFNg 30min ChIP-seq Peaks from ENCODE/SYDH 3 239 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 IRF1 Standard IFNg 30min ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFg3 IRF1 Sd\ subGroups view=Peaks factor=IRF1 cellType=t1K562 control=STD treatment=IFNg30\ track wgEncodeSydhTfbsK562Irf1Ifng30StdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Pol2s2IggrabUniPk K562 POLR2A s2 narrowPeak K562 TFBS Uniform Peaks of Pol2(phosphoS2) (Iggrab) ENCODE/Stanford/Analysis 1 239 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Pol2(phosphoS2) (Iggrab) ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 POLR2A s2\ subGroups tier=a10 cellType=a10K562 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhK562Pol2s2IggrabUniPk\ wgEncodeOpenChromDnaseMyometrSig Myometr DS bigWig 0.000000 1.229800 Myometr DNaseI HS Density Signal from ENCODE/Duke 2 239 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Myometr DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Myometr DS\ subGroups view=SIG cellType=t3MYOMETR treatment=zNONE\ track wgEncodeOpenChromDnaseMyometrSig\ type bigWig 0.000000 1.229800\ wgEncodeCshlShortRnaSeqSknshCellCiptapContigs SKSH cell CIP C bed 6 SK-N-SH CIP-TAP whole cell small RNA-seq Contigs from ENCODE/CSHL 2 239 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH CIP-TAP whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel SKSH cell CIP C\ subGroups view=Contigs rep=Pooled cellType=t2SKNSH localization=CELL protocol=CIPTAP rank=none\ track wgEncodeCshlShortRnaSeqSknshCellCiptapContigs\ type bed 6\ wgEncodeUwHistoneGm06990H3k36me3StdPkRep1 GM90 H3K36M3 Pk 1 narrowPeak GM06990 H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 240 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel GM90 H3K36M3 Pk 1\ subGroups view=Peaks factor=H3K36ME3 cellType=t3GM06990 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k36me3StdPkRep1\ type narrowPeak\ encTfChipPkENCFF305HBV H1-hESC ATF3 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in H1-hESC from ENCODE 3 (ENCFF305HBV) 1 240 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of ATF3 in H1-hESC from ENCODE 3 (ENCFF305HBV)\ parent encTfChipPk off\ shortLabel H1-hESC ATF3\ subGroups cellType=H1-hESC factor=ATF3\ track encTfChipPkENCFF305HBV\ wgEncodeUwTfbsHek293CtcfStdPkRep1 H293 CTCF Pk 1 narrowPeak HEK293 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 240 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel H293 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HEK293 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHek293CtcfStdPkRep1\ type narrowPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_ctss_rev H9MelanocyticInduction_Day24Br2- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_reverse 0 240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep2%20%28H9EB-2%20d24%29.CNhs12834.12734-135H7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12734-135H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_tpm_rev H9MelanocyticInduction_Day24Br2- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_reverse 1 240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep2%20%28H9EB-2%20d24%29.CNhs12834.12734-135H7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12734-135H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHbvpRawRep1 HBVP Sg 1 bigWig 1.000000 35148.000000 HBVP DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 240 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HBVP DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HBVP Sg 1\ subGroups view=zRSig cellType=t3HBVP rep=rep1 treatment=None\ track wgEncodeUwDnaseHbvpRawRep1\ type bigWig 1.000000 35148.000000\ wgEncodeBroadHistoneHelas3H3k79me2StdSig HeLa-S3 H3K79m2 bigWig 0.040000 20610.480469 HeLa-S3 H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 240 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HeLa-S3 H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H3k79me2StdSig\ type bigWig 0.040000 20610.480469\ wgEncodeCshlLongRnaSeqHelas3NucleusPamJunctions HeS3 nuc pA- J bed 6 + HeLa-S3 nucleus polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 240 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 nucleus polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HeS3 nuc pA- J\ subGroups view=Junctions cellType=t2HELAS3 localization=NUCLEUS rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHelas3NucleusPamJunctions\ type bed 6 +\ wgEncodeHaibTfbsH1hescHdac2sc6296V0416102RawRep1 hESC HDAC2 V102 1 bigWig 0.183528 244.552002 H1-hESC HDAC2 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 240 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC HDAC2 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC HDAC2 V102 1\ subGroups view=RawSignal factor=HDAC2SC6296 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescHdac2sc6296V0416102RawRep1\ type bigWig 0.183528 244.552002\ wgEncodeRikenCageImr90CellPapAlnRep1 IMR9 cell pA+ A 1 bam IMR90 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 240 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel IMR9 cell pA+ A 1\ subGroups view=Alignments cellType=t2IMR90 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageImr90CellPapAlnRep1\ type bam\ wgEncodeSydhTfbsK562Irf1Ifng30StdSig K562 IFg3 IRF1 Sd bigWig 1.000000 22939.000000 K562 IRF1 Standard IFNg 30min ChIP-seq Signal from ENCODE/SYDH 2 240 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 IRF1 Standard IFNg 30min ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFg3 IRF1 Sd\ subGroups view=Signal factor=IRF1 cellType=t1K562 control=STD treatment=IFNg30\ track wgEncodeSydhTfbsK562Irf1Ifng30StdSig\ type bigWig 1.000000 22939.000000\ wgEncodeAwgTfbsSydhK562Pol2s2UniPk K562 POLR2A s3 narrowPeak K562 TFBS Uniform Peaks of Pol2(phosphoS2) from ENCODE/Stanford/Analysis 1 240 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Pol2(phosphoS2) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 POLR2A s3\ subGroups tier=a10 cellType=a10K562 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhK562Pol2s2UniPk\ wgEncodeOpenChromDnaseMyometrBaseOverlapSignalV2 Myometr OS bigWig 0.000000 209.000000 Myometr DNaseI HS Overlap Signal from ENCODE/Duke 2 240 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Myometr DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Myometr OS\ subGroups view=SIGBO cellType=t3MYOMETR treatment=zNONE\ track wgEncodeOpenChromDnaseMyometrBaseOverlapSignalV2\ type bigWig 0.000000 209.000000\ wgEncodeCshlShortRnaSeqSknshCellShorttotalCiptapMinusRep3 SKSH cell CIP - 1 bigWig 1.000000 1678623.000000 SK-N-SH CIP-TAP whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 240 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH CIP-TAP whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH cell CIP - 1\ subGroups view=MinusSignal cellType=t2SKNSH localization=CELL protocol=CIPTAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshCellShorttotalCiptapMinusRep3\ type bigWig 1.000000 1678623.000000\ wgEncodeUwHistoneGm06990H3k36me3StdRawRep1 GM90 H3K36M3 Sg 1 bigWig 1.000000 4071.000000 GM06990 H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 241 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel GM90 H3K36M3 Sg 1\ subGroups view=zRSig factor=H3K36ME3 cellType=t3GM06990 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k36me3StdRawRep1\ type bigWig 1.000000 4071.000000\ encTfChipPkENCFF977MDK H1-hESC BACH1 narrowPeak Transcription Factor ChIP-seq Peaks of BACH1 in H1-hESC from ENCODE 3 (ENCFF977MDK) 1 241 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of BACH1 in H1-hESC from ENCODE 3 (ENCFF977MDK)\ parent encTfChipPk off\ shortLabel H1-hESC BACH1\ subGroups cellType=H1-hESC factor=BACH1\ track encTfChipPkENCFF977MDK\ wgEncodeUwTfbsHek293CtcfStdRawRep1 H293 CTCF Sg 1 bigWig 1.000000 5462.000000 HEK293 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 241 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEK293 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel H293 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HEK293 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHek293CtcfStdRawRep1\ type bigWig 1.000000 5462.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_ctss_fwd H9MelanocyticInduction_Day24Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_forward 0 241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep3%20%28H9EB-3%20d24%29.CNhs12916.12832-137A6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12832-137A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_tpm_fwd H9MelanocyticInduction_Day24Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_forward 1 241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep3%20%28H9EB-3%20d24%29.CNhs12916.12832-137A6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12832-137A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHbvsmcHotspotsRep1 HBVSCM Ht 1 broadPeak HBVSCM DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 241 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBVSCM DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel HBVSCM Ht 1\ subGroups view=Hot cellType=t3HBVSMC rep=rep1 treatment=None\ track wgEncodeUwDnaseHbvsmcHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHelas3H4k20me1StdPk HeLa-S3 H4K20m1 broadPeak HeLa-S3 H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 241 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HeLa-S3 H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H4k20me1StdPk\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3NucleusLongnonpolyaMinusRawSigRep1 HeS3 nuc pA- - 1 bigWig 1.000000 2726794.000000 HeLa-S3 nucleus polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 241 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 nucleus polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeS3 nuc pA- - 1\ subGroups view=MinusSignal cellType=t2HELAS3 localization=NUCLEUS rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHelas3NucleusLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 2726794.000000\ wgEncodeHaibTfbsH1hescHdac2sc6296V0416102PkRep2 hESC HDAC2 V102 2 broadPeak H1-hESC HDAC2 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 241 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC HDAC2 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC HDAC2 V102 2\ subGroups view=Peaks factor=HDAC2SC6296 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescHdac2sc6296V0416102PkRep2\ type broadPeak\ wgEncodeRikenCageImr90CellPapAlnRep2 IMR9 cell pA+ A 2 bam IMR90 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 241 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel IMR9 cell pA+ A 2\ subGroups view=Alignments cellType=t2IMR90 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageImr90CellPapAlnRep2\ type bam\ wgEncodeSydhTfbsK562Irf1Ifng6hStdPk K562 IFg6 IRF1 Sd narrowPeak K562 IRF1 Standard IFNg 6hrs ChIP-seq Peaks from ENCODE/SYDH 3 241 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 IRF1 Standard IFNg 6hrs ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFg6 IRF1 Sd\ subGroups view=Peaks factor=IRF1 cellType=t1K562 control=STD treatment=IFNg6h\ track wgEncodeSydhTfbsK562Irf1Ifng6hStdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Pol2Ifng30UniPk K562+IFg30 POLR2A narrowPeak K562 (IFNg30) TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis 1 241 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNg30) TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFg30 POLR2A\ subGroups tier=a10 cellType=a10K562 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhK562Pol2Ifng30UniPk\ wgEncodeOpenChromDnaseNaivebcellPk Naive B cell Pk narrowPeak Naive B cell DNaseI HS Peaks from ENCODE/Duke 3 241 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Naive B cell DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Naive B cell Pk\ subGroups view=Peaks cellType=t3NAIVEBCELL treatment=zNONE\ track wgEncodeOpenChromDnaseNaivebcellPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqSknshCellShorttotalCiptapMinusRep4 SKSH cell CIP - 2 bigWig 1.000000 2018451.000000 SK-N-SH CIP-TAP whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 241 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH CIP-TAP whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH cell CIP - 2\ subGroups view=MinusSignal cellType=t2SKNSH localization=CELL protocol=CIPTAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshCellShorttotalCiptapMinusRep4\ type bigWig 1.000000 2018451.000000\ wgEncodeUwHistoneGm06990H3k36me3StdHotspotsRep2 GM90 H3K36M3 Ht 2 broadPeak GM06990 H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 242 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel GM90 H3K36M3 Ht 2\ subGroups view=Hot factor=H3K36ME3 cellType=t3GM06990 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k36me3StdHotspotsRep2\ type broadPeak\ encTfChipPkENCFF175OER H1-hESC BCL11A 1 narrowPeak Transcription Factor ChIP-seq Peaks of BCL11A in H1-hESC from ENCODE 3 (ENCFF175OER) 1 242 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of BCL11A in H1-hESC from ENCODE 3 (ENCFF175OER)\ parent encTfChipPk off\ shortLabel H1-hESC BCL11A 1\ subGroups cellType=H1-hESC factor=BCL11A\ track encTfChipPkENCFF175OER\ wgEncodeUwTfbsHek293CtcfStdHotspotsRep2 H293 CTCF Ht 2 broadPeak HEK293 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 242 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel H293 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3HEK293 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHek293CtcfStdHotspotsRep2\ type broadPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_ctss_rev H9MelanocyticInduction_Day24Br3- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_reverse 0 242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep3%20%28H9EB-3%20d24%29.CNhs12916.12832-137A6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12832-137A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_tpm_rev H9MelanocyticInduction_Day24Br3- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_reverse 1 242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep3%20%28H9EB-3%20d24%29.CNhs12916.12832-137A6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12832-137A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHbvsmcPkRep1 HBVSCM Pk 1 narrowPeak HBVSCM DNaseI HS Peaks Rep 1 from ENCODE/UW 1 242 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBVSCM DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HBVSCM Pk 1\ subGroups view=Peaks cellType=t3HBVSMC rep=rep1 treatment=None\ track wgEncodeUwDnaseHbvsmcPkRep1\ type narrowPeak\ wgEncodeBroadHistoneHelas3H4k20me1StdSig HeLa-S3 H4K20m1 bigWig 0.040000 25408.839844 HeLa-S3 H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 242 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HeLa-S3 H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3H4k20me1StdSig\ type bigWig 0.040000 25408.839844\ wgEncodeCshlLongRnaSeqHelas3NucleusLongnonpolyaMinusRawSigRep2 HeS3 nuc pA- - 2 bigWig 1.000000 6425744.000000 HeLa-S3 nucleus polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 242 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 nucleus polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeS3 nuc pA- - 2\ subGroups view=MinusSignal cellType=t2HELAS3 localization=NUCLEUS rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3NucleusLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 6425744.000000\ wgEncodeHaibTfbsH1hescHdac2sc6296V0416102RawRep2 hESC HDAC2 V102 2 bigWig 0.160348 214.785995 H1-hESC HDAC2 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 242 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC HDAC2 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC HDAC2 V102 2\ subGroups view=RawSignal factor=HDAC2SC6296 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescHdac2sc6296V0416102RawRep2\ type bigWig 0.160348 214.785995\ wgEncodeSydhTfbsK562Irf1Ifng6hStdSig K562 IFg6 IRF1 Sd bigWig 0.000000 10285.099609 K562 IRF1 Standard IFNg 6hrs ChIP-seq Signal from ENCODE/SYDH 2 242 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 IRF1 Standard IFNg 6hrs ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFg6 IRF1 Sd\ subGroups view=Signal factor=IRF1 cellType=t1K562 control=STD treatment=IFNg6h\ track wgEncodeSydhTfbsK562Irf1Ifng6hStdSig\ type bigWig 0.000000 10285.099609\ wgEncodeAwgTfbsUtaK562Pol2UniPk K562 POLR2A t narrowPeak K562 TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis 1 242 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 POLR2A t\ subGroups tier=a10 cellType=a10K562 factor=POLR2A lab=UT-A\ track wgEncodeAwgTfbsUtaK562Pol2UniPk\ wgEncodeRikenCageMcf7CytosolPapTssHmm MCF7 cyto pA+ bed 6 MCF-7 cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 242 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel MCF7 cyto pA+\ subGroups view=TssHmm cellType=t2MCF7 localization=cytosol rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageMcf7CytosolPapTssHmm\ type bed 6\ wgEncodeOpenChromDnaseNaivebcellSig Naive B cell DS bigWig 0.000000 1.104600 Naive B cell DNaseI HS Density Signal from ENCODE/Duke 2 242 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Naive B cell DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Naive B cell DS\ subGroups view=SIG cellType=t3NAIVEBCELL treatment=zNONE\ track wgEncodeOpenChromDnaseNaivebcellSig\ type bigWig 0.000000 1.104600\ wgEncodeCshlShortRnaSeqSknshCellShorttotalCiptapPlusRep3 SKSH cell CIP + 1 bigWig 1.000000 1678252.000000 SK-N-SH CIP-TAP whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 242 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH CIP-TAP whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH cell CIP + 1\ subGroups view=PlusSignal cellType=t2SKNSH localization=CELL protocol=CIPTAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshCellShorttotalCiptapPlusRep3\ type bigWig 1.000000 1678252.000000\ wgEncodeUwHistoneGm06990H3k36me3StdPkRep2 GM90 H3K36M3 Pk 2 narrowPeak GM06990 H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 243 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel GM90 H3K36M3 Pk 2\ subGroups view=Peaks factor=H3K36ME3 cellType=t3GM06990 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k36me3StdPkRep2\ type narrowPeak\ encTfChipPkENCFF697OBV H1-hESC BCL11A 2 narrowPeak Transcription Factor ChIP-seq Peaks of BCL11A in H1-hESC from ENCODE 3 (ENCFF697OBV) 1 243 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of BCL11A in H1-hESC from ENCODE 3 (ENCFF697OBV)\ parent encTfChipPk off\ shortLabel H1-hESC BCL11A 2\ subGroups cellType=H1-hESC factor=BCL11A\ track encTfChipPkENCFF697OBV\ wgEncodeUwTfbsHek293CtcfStdPkRep2 H293 CTCF Pk 2 narrowPeak HEK293 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 243 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel H293 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3HEK293 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHek293CtcfStdPkRep2\ type narrowPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_ctss_fwd H9MelanocyticInduction_Day27Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_forward 0 243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep1%20%28H9EB-1%20d27%29.CNhs12902.12637-134F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12637-134F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_tpm_fwd H9MelanocyticInduction_Day27Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_forward 1 243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep1%20%28H9EB-1%20d27%29.CNhs12902.12637-134F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12637-134F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHbvsmcRawRep1 HBVSCM Sg 1 bigWig 1.000000 24532.000000 HBVSCM DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 243 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HBVSCM DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HBVSCM Sg 1\ subGroups view=zRSig cellType=t3HBVSMC rep=rep1 treatment=None\ track wgEncodeUwDnaseHbvsmcRawRep1\ type bigWig 1.000000 24532.000000\ wgEncodeBroadHistoneHelas3Pol2bStdPk HeLa-S3 Pol2 broadPeak HeLa-S3 Pol2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 243 0 119 158 127 187 206 1 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 Pol2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HeLa-S3 Pol2\ subGroups view=Peaks factor=POL2 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3Pol2bStdPk\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3NucleusLongnonpolyaPlusRawSigRep1 HeS3 nuc pA- + 1 bigWig 1.000000 15630286.000000 HeLa-S3 nucleus polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 243 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 nucleus polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeS3 nuc pA- + 1\ subGroups view=PlusSignal cellType=t2HELAS3 localization=NUCLEUS rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHelas3NucleusLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 15630286.000000\ wgEncodeHaibTfbsH1hescJundV0416102PkRep1 hESC JunD V102 1 broadPeak H1-hESC JunD v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 243 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC JunD v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC JunD V102 1\ subGroups view=Peaks factor=JUND cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescJundV0416102PkRep1\ type broadPeak\ wgEncodeSydhTfbsK562JundIggrabPk K562 JunD IgR narrowPeak K562 JunD IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 243 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 JunD IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 JunD IgR\ subGroups view=Peaks factor=JUND cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562JundIggrabPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Pol2UniPk K562 POLR2A y narrowPeak K562 TFBS Uniform Peaks of Pol2 from ENCODE/Yale/Analysis 1 243 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Pol2 from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 POLR2A y\ subGroups tier=a10 cellType=a10K562 factor=POLR2A lab=Yale\ track wgEncodeAwgTfbsSydhK562Pol2UniPk\ wgEncodeRikenCageMcf7CytosolPapPlusRawRep3 MCF7 cyto pA+ + 3 bigWig 1.000000 569406.000000 MCF-7 cytosol polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN 2 243 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 cytosol polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel MCF7 cyto pA+ + 3\ subGroups view=PlusRawSignal cellType=t2MCF7 localization=cytosol rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageMcf7CytosolPapPlusRawRep3\ type bigWig 1.000000 569406.000000\ wgEncodeOpenChromDnaseNaivebcellBaseOverlapSignal Naive B cell OS bigWig 0.000000 231.000000 Naive B cell DNaseI HS Overlap Signal from ENCODE/Duke 2 243 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Naive B cell DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Naive B cell OS\ subGroups view=SIGBO cellType=t3NAIVEBCELL treatment=zNONE\ track wgEncodeOpenChromDnaseNaivebcellBaseOverlapSignal\ type bigWig 0.000000 231.000000\ wgEncodeCshlShortRnaSeqSknshCellShorttotalCiptapPlusRep4 SKSH cell CIP + 2 bigWig 1.000000 1552471.000000 SK-N-SH CIP-TAP whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 243 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH CIP-TAP whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH cell CIP + 2\ subGroups view=PlusSignal cellType=t2SKNSH localization=CELL protocol=CIPTAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshCellShorttotalCiptapPlusRep4\ type bigWig 1.000000 1552471.000000\ wgEncodeUwHistoneGm06990H3k36me3StdRawRep2 GM90 H3K36M3 Sg 2 bigWig 1.000000 5082.000000 GM06990 H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 244 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel GM90 H3K36M3 Sg 2\ subGroups view=zRSig factor=H3K36ME3 cellType=t3GM06990 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm06990H3k36me3StdRawRep2\ type bigWig 1.000000 5082.000000\ encTfChipPkENCFF658OOS H1-hESC BRCA1 narrowPeak Transcription Factor ChIP-seq Peaks of BRCA1 in H1-hESC from ENCODE 3 (ENCFF658OOS) 1 244 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of BRCA1 in H1-hESC from ENCODE 3 (ENCFF658OOS)\ parent encTfChipPk off\ shortLabel H1-hESC BRCA1\ subGroups cellType=H1-hESC factor=BRCA1\ track encTfChipPkENCFF658OOS\ wgEncodeUwTfbsHek293CtcfStdRawRep2 H293 CTCF Sg 2 bigWig 1.000000 1536.000000 HEK293 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 244 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEK293 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel H293 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3HEK293 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHek293CtcfStdRawRep2\ type bigWig 1.000000 1536.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_ctss_rev H9MelanocyticInduction_Day27Br1- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_reverse 0 244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep1%20%28H9EB-1%20d27%29.CNhs12902.12637-134F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12637-134F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_tpm_rev H9MelanocyticInduction_Day27Br1- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_reverse 1 244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep1%20%28H9EB-1%20d27%29.CNhs12902.12637-134F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12637-134F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHbvsmcHotspotsRep2 HBVSCM Ht 2 broadPeak HBVSCM DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 244 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBVSCM DNaseI HS HotSpots Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel HBVSCM Ht 2\ subGroups view=Hot cellType=t3HBVSMC rep=rep2 treatment=None\ track wgEncodeUwDnaseHbvsmcHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneHelas3Pol2bStdSig HeLa-S3 Pol2(b) bigWig 0.040000 48100.679688 HeLa-S3 Pol2(b) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 244 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Pol2(b) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HeLa-S3 Pol2(b)\ subGroups view=Signal factor=POL2 cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3Pol2bStdSig\ type bigWig 0.040000 48100.679688\ wgEncodeCshlLongRnaSeqHelas3NucleusLongnonpolyaPlusRawSigRep2 HeS3 nuc pA- + 2 bigWig 1.000000 5526818.000000 HeLa-S3 nucleus polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 244 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 nucleus polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeS3 nuc pA- + 2\ subGroups view=PlusSignal cellType=t2HELAS3 localization=NUCLEUS rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3NucleusLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 5526818.000000\ wgEncodeHaibTfbsH1hescJundV0416102RawRep1 hESC JunD V102 1 bigWig 0.193727 228.839996 H1-hESC JunD v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 244 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC JunD v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC JunD V102 1\ subGroups view=RawSignal factor=JUND cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescJundV0416102RawRep1\ type bigWig 0.193727 228.839996\ wgEncodeSydhTfbsK562JundIggrabSig K562 JunD IgR bigWig 1.000000 14542.000000 K562 JunD IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 244 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 JunD IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 JunD IgR\ subGroups view=Signal factor=JUND cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562JundIggrabSig\ type bigWig 1.000000 14542.000000\ wgEncodeAwgTfbsSydhK562Pol2Ifna30UniPk K562+IFa30 POLR2A narrowPeak K562 (IFNa30) TFBS Uniform Peaks of Pol2 from ENCODE/Yale/Analysis 1 244 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNa30) TFBS Uniform Peaks of Pol2 from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFa30 POLR2A\ subGroups tier=a10 cellType=a10K562 factor=POLR2A lab=Yale\ track wgEncodeAwgTfbsSydhK562Pol2Ifna30UniPk\ wgEncodeRikenCageMcf7CytosolPapPlusRawRep4 MCF7 cyto pA+ + 4 bigWig 1.000000 855095.000000 MCF-7 cytosol polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN 2 244 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 cytosol polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel MCF7 cyto pA+ + 4\ subGroups view=PlusRawSignal cellType=t2MCF7 localization=cytosol rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageMcf7CytosolPapPlusRawRep4\ type bigWig 1.000000 855095.000000\ wgEncodeOpenChromDnaseNhekPk NHEK Pk narrowPeak NHEK DNaseI HS Peaks from ENCODE/Duke 3 244 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel NHEK Pk\ subGroups view=Peaks cellType=t3NHEK treatment=zNONE\ track wgEncodeOpenChromDnaseNhekPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqSknshCellContigs SKSH cell C bed 6 SK-N-SH whole cell small RNA-seq Contigs from ENCODE/CSHL 2 244 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel SKSH cell C\ subGroups view=Contigs rep=Pooled cellType=t2SKNSH localization=CELL protocol=NONE rank=none\ track wgEncodeCshlShortRnaSeqSknshCellContigs\ type bed 6\ wgEncodeUwHistoneGm06990InputStdRawRep1 GM90 In Sg 1 bigWig 1.000000 8015.000000 GM06990 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 245 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM06990 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel GM90 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3GM06990 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm06990InputStdRawRep1\ type bigWig 1.000000 8015.000000\ encTfChipPkENCFF936JMD H1-hESC CBX5 narrowPeak Transcription Factor ChIP-seq Peaks of CBX5 in H1-hESC from ENCODE 3 (ENCFF936JMD) 1 245 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of CBX5 in H1-hESC from ENCODE 3 (ENCFF936JMD)\ parent encTfChipPk off\ shortLabel H1-hESC CBX5\ subGroups cellType=H1-hESC factor=CBX5\ track encTfChipPkENCFF936JMD\ wgEncodeUwTfbsHek293InputStdRawRep1 H293 In Sg 1 bigWig 1.000000 8215.000000 HEK293 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 245 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEK293 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel H293 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HEK293 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHek293InputStdRawRep1\ type bigWig 1.000000 8215.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_ctss_fwd H9MelanocyticInduction_Day27Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_forward 0 245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep2%20%28H9EB-2%20d27%29.CNhs12835.12735-135H8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12735-135H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_tpm_fwd H9MelanocyticInduction_Day27Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_forward 1 245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep2%20%28H9EB-2%20d27%29.CNhs12835.12735-135H8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12735-135H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHbvsmcPkRep2 HBVSCM Pk 2 narrowPeak HBVSCM DNaseI HS Peaks Rep 2 from ENCODE/UW 1 245 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBVSCM DNaseI HS Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HBVSCM Pk 2\ subGroups view=Peaks cellType=t3HBVSMC rep=rep2 treatment=None\ track wgEncodeUwDnaseHbvsmcPkRep2\ type narrowPeak\ wgEncodeBroadHistoneHelas3ControlStdSig HeLa-S3 Input bigWig 0.040000 94318.796875 HeLa-S3 Input Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 245 0 119 158 127 187 206 1 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Input Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HeLa-S3 Input\ subGroups view=Signal factor=zCTRL cellType=t2HELAS3 treatment=zNONE\ track wgEncodeBroadHistoneHelas3ControlStdSig\ type bigWig 0.040000 94318.796875\ wgEncodeCshlLongRnaSeqHelas3NucleusPapAlnRep1 HeS3 nuc pA+ A 1 bam HeLa-S3 nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 245 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeS3 nuc pA+ A 1\ subGroups view=Alignments cellType=t2HELAS3 localization=NUCLEUS rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHelas3NucleusPapAlnRep1\ type bam\ wgEncodeHaibTfbsH1hescJundV0416102PkRep2 hESC JunD V102 2 broadPeak H1-hESC JunD v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 245 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC JunD v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC JunD V102 2\ subGroups view=Peaks factor=JUND cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescJundV0416102PkRep2\ type broadPeak\ wgEncodeSydhTfbsK562Kap1UcdPk K562 KAP1 UCD narrowPeak K562 KAP1 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 245 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 KAP1 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 KAP1 UCD\ subGroups view=Peaks factor=KAP1 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Kap1UcdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Pol2Ifna6hUniPk K562+IFa6h POLR2A narrowPeak K562 (IFNa6h) TFBS Uniform Peaks of Pol2 from ENCODE/Yale/Analysis 1 245 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNa6h) TFBS Uniform Peaks of Pol2 from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFa6h POLR2A\ subGroups tier=a10 cellType=a10K562 factor=POLR2A lab=Yale\ track wgEncodeAwgTfbsSydhK562Pol2Ifna6hUniPk\ wgEncodeRikenCageMcf7CytosolPapMinusRawRep3 MCF7 cyto pA+ - 3 bigWig 1.000000 217567.000000 MCF-7 cytosol polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN 2 245 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 cytosol polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel MCF7 cyto pA+ - 3\ subGroups view=MinusRawSignal cellType=t2MCF7 localization=cytosol rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageMcf7CytosolPapMinusRawRep3\ type bigWig 1.000000 217567.000000\ wgEncodeOpenChromDnaseNhekSig NHEK DS bigWig 0.000000 1.748600 NHEK DNaseI HS Density Signal from ENCODE/Duke 2 245 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel NHEK DS\ subGroups view=SIG cellType=t3NHEK treatment=zNONE\ track wgEncodeOpenChromDnaseNhekSig\ type bigWig 0.000000 1.748600\ wgEncodeCshlShortRnaSeqSknshCellShorttotalMinusRep3 SKSH cell - 1 bigWig 1.000000 19972644.000000 SK-N-SH whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 245 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH cell - 1\ subGroups view=MinusSignal cellType=t2SKNSH localization=CELL protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshCellShorttotalMinusRep3\ type bigWig 1.000000 19972644.000000\ wgEncodeUwHistoneGm12864H3k04me3StdHotspotsRep1 GM64 H3K4M3 Ht 1 broadPeak GM12864 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 246 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12864 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel GM64 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3GM12864 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12864H3k04me3StdHotspotsRep1\ type broadPeak\ encTfChipPkENCFF485WCF H1-hESC CBX8 narrowPeak Transcription Factor ChIP-seq Peaks of CBX8 in H1-hESC from ENCODE 3 (ENCFF485WCF) 1 246 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of CBX8 in H1-hESC from ENCODE 3 (ENCFF485WCF)\ parent encTfChipPk off\ shortLabel H1-hESC CBX8\ subGroups cellType=H1-hESC factor=CBX8\ track encTfChipPkENCFF485WCF\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_ctss_rev H9MelanocyticInduction_Day27Br2- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_reverse 0 246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep2%20%28H9EB-2%20d27%29.CNhs12835.12735-135H8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12735-135H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_tpm_rev H9MelanocyticInduction_Day27Br2- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_reverse 1 246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep2%20%28H9EB-2%20d27%29.CNhs12835.12735-135H8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12735-135H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHbvsmcRawRep2 HBVSCM Sg 2 bigWig 1.000000 19274.000000 HBVSCM DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 246 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HBVSCM DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HBVSCM Sg 2\ subGroups view=zRSig cellType=t3HBVSMC rep=rep2 treatment=None\ track wgEncodeUwDnaseHbvsmcRawRep2\ type bigWig 1.000000 19274.000000\ wgEncodeBroadHistoneHepg2CtcfStdPk HepG2 CTCF broadPeak HepG2 CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 246 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HepG2 CTCF\ subGroups view=Peaks factor=CTCF cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2CtcfStdPk\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3NucleusPapAlnRep2 HeS3 nuc pA+ A 2 bam HeLa-S3 nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 246 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeS3 nuc pA+ A 2\ subGroups view=Alignments cellType=t2HELAS3 localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3NucleusPapAlnRep2\ type bam\ wgEncodeHaibTfbsH1hescJundV0416102RawRep2 hESC JunD V102 2 bigWig 0.099036 172.322006 H1-hESC JunD v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 246 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC JunD v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC JunD V102 2\ subGroups view=RawSignal factor=JUND cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescJundV0416102RawRep2\ type bigWig 0.099036 172.322006\ wgEncodeUwTfbsHffCtcfStdHotspotsRep1 HFF CTCF Ht 1 broadPeak HFF CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 246 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel HFF CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HFF treatment=aNone rep=rep1\ track wgEncodeUwTfbsHffCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeSydhTfbsK562Kap1UcdSig K562 KAP1 UCD bigWig 1.000000 31119.000000 K562 KAP1 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 246 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 KAP1 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 KAP1 UCD\ subGroups view=Signal factor=KAP1 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Kap1UcdSig\ type bigWig 1.000000 31119.000000\ wgEncodeAwgTfbsSydhK562Pol2Ifng6hUniPk K562+IFg6h POLR2A narrowPeak K562 (IFNg6h) TFBS Uniform Peaks of Pol2 from ENCODE/Yale/Analysis 1 246 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNg6h) TFBS Uniform Peaks of Pol2 from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFg6h POLR2A\ subGroups tier=a10 cellType=a10K562 factor=POLR2A lab=Yale\ track wgEncodeAwgTfbsSydhK562Pol2Ifng6hUniPk\ wgEncodeRikenCageMcf7CytosolPapMinusRawRep4 MCF7 cyto pA+ - 4 bigWig 1.000000 451589.000000 MCF-7 cytosol polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN 2 246 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 cytosol polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel MCF7 cyto pA+ - 4\ subGroups view=MinusRawSignal cellType=t2MCF7 localization=cytosol rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageMcf7CytosolPapMinusRawRep4\ type bigWig 1.000000 451589.000000\ wgEncodeOpenChromDnaseNhekBaseOverlapSignal NHEK OS bigWig 0.000000 194.000000 NHEK DNaseI HS Overlap Signal from ENCODE/Duke 2 246 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel NHEK OS\ subGroups view=SIGBO cellType=t3NHEK treatment=zNONE\ track wgEncodeOpenChromDnaseNhekBaseOverlapSignal\ type bigWig 0.000000 194.000000\ wgEncodeCshlShortRnaSeqSknshCellShorttotalMinusRep4 SKSH cell - 2 bigWig 1.000000 7249939.000000 SK-N-SH whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 246 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH cell - 2\ subGroups view=MinusSignal cellType=t2SKNSH localization=CELL protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshCellShorttotalMinusRep4\ type bigWig 1.000000 7249939.000000\ wgEncodeUwHistoneGm12864H3k04me3StdPkRep1 GM64 H3K4M3 Pk 1 narrowPeak GM12864 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 247 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12864 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel GM64 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3GM12864 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12864H3k04me3StdPkRep1\ type narrowPeak\ encTfChipPkENCFF617RGJ H1-hESC CHD1 1 narrowPeak Transcription Factor ChIP-seq Peaks of CHD1 in H1-hESC from ENCODE 3 (ENCFF617RGJ) 1 247 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of CHD1 in H1-hESC from ENCODE 3 (ENCFF617RGJ)\ parent encTfChipPk off\ shortLabel H1-hESC CHD1 1\ subGroups cellType=H1-hESC factor=CHD1\ track encTfChipPkENCFF617RGJ\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_ctss_fwd H9MelanocyticInduction_Day27Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_forward 0 247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep3%20%28H9EB-3%20d27%29.CNhs12917.12833-137A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12833-137A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_tpm_fwd H9MelanocyticInduction_Day27Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_forward 1 247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep3%20%28H9EB-3%20d27%29.CNhs12917.12833-137A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12833-137A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcfHotspotsRep1 HCF Ht 1 broadPeak HCF DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 247 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCF DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HCF Ht 1\ subGroups view=Hot cellType=t3HCF rep=rep1 treatment=None\ track wgEncodeUwDnaseHcfHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHepg2CtcfStdSig HepG2 CTCF bigWig 0.040000 10767.599609 HepG2 CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 247 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HepG2 CTCF\ subGroups view=Signal factor=CTCF cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2CtcfStdSig\ type bigWig 0.040000 10767.599609\ wgEncodeCshlLongRnaSeqHelas3NucleusPapContigs HeS3 nuc pA+ C bed 6 + HeLa-S3 nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 247 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HeS3 nuc pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HELAS3 localization=NUCLEUS rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqHelas3NucleusPapContigs\ type bed 6 +\ wgEncodeHaibTfbsH1hescMaxV0422111PkRep1 hESC Max V11 1 broadPeak H1-hESC Max v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 247 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Max v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC Max V11 1\ subGroups view=Peaks factor=MAX cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescMaxV0422111PkRep1\ type broadPeak\ wgEncodeUwTfbsHffCtcfStdPkRep1 HFF CTCF Pk 1 narrowPeak HFF CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 247 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HFF CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HFF treatment=aNone rep=rep1\ track wgEncodeUwTfbsHffCtcfStdPkRep1\ type narrowPeak\ wgEncodeSydhTfbsK562MaffIggrabPk K562 MafF IgR narrowPeak K562 MafF IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 247 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 MafF IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 MafF IgR\ subGroups view=Peaks factor=MAFFM8194 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562MaffIggrabPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Pol3UniPk K562 POLR3G narrowPeak K562 TFBS Uniform Peaks of Pol3 from ENCODE/Stanford/Analysis 1 247 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Pol3 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 POLR3G\ subGroups tier=a10 cellType=a10K562 factor=POLR3G lab=Stanford\ track wgEncodeAwgTfbsSydhK562Pol3UniPk\ wgEncodeRikenCageMcf7CytosolPapAlnRep3 MCF7 cyto pA+ A 3 bam MCF-7 cytosol polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN 0 247 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 cytosol polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel MCF7 cyto pA+ A 3\ subGroups view=Alignments cellType=t2MCF7 localization=cytosol rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageMcf7CytosolPapAlnRep3\ type bam\ wgEncodeOpenChromDnaseOlfneurospherePk Olfact neuro Pk narrowPeak Olf neurosphere DNaseI HS Peaks from ENCODE/Duke 3 247 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Olf neurosphere DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Olfact neuro Pk\ subGroups view=Peaks cellType=t3OLFACTORYNEUROSPHERE treatment=zNONE\ track wgEncodeOpenChromDnaseOlfneurospherePk\ type narrowPeak\ wgEncodeCshlShortRnaSeqSknshCellShorttotalPlusRep3 SKSH cell + 1 bigWig 1.000000 8651386.000000 SK-N-SH whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 247 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH cell + 1\ subGroups view=PlusSignal cellType=t2SKNSH localization=CELL protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshCellShorttotalPlusRep3\ type bigWig 1.000000 8651386.000000\ wgEncodeUwHistoneGm12864H3k04me3StdRawRep1 GM64 H3K4M3 Sg 1 bigWig 1.000000 4038.000000 GM12864 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 248 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12864 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel GM64 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3GM12864 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12864H3k04me3StdRawRep1\ type bigWig 1.000000 4038.000000\ encTfChipPkENCFF607EOG H1-hESC CHD1 2 narrowPeak Transcription Factor ChIP-seq Peaks of CHD1 in H1-hESC from ENCODE 3 (ENCFF607EOG) 1 248 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of CHD1 in H1-hESC from ENCODE 3 (ENCFF607EOG)\ parent encTfChipPk off\ shortLabel H1-hESC CHD1 2\ subGroups cellType=H1-hESC factor=CHD1\ track encTfChipPkENCFF607EOG\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_ctss_rev H9MelanocyticInduction_Day27Br3- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_reverse 0 248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep3%20%28H9EB-3%20d27%29.CNhs12917.12833-137A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12833-137A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_tpm_rev H9MelanocyticInduction_Day27Br3- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_reverse 1 248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep3%20%28H9EB-3%20d27%29.CNhs12917.12833-137A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12833-137A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcfPkRep1 HCF Pk 1 narrowPeak HCF DNaseI HS Peaks Rep 1 from ENCODE/UW 1 248 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCF DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HCF Pk 1\ subGroups view=Peaks cellType=t3HCF rep=rep1 treatment=None\ track wgEncodeUwDnaseHcfPkRep1\ type narrowPeak\ wgEncodeBroadHistoneHepg2Ezh239875Pk HepG2 EZH2 broadPeak HepG2 EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 248 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HepG2 EZH2\ subGroups view=Peaks factor=EZH239875 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2Ezh239875Pk\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3NucleusPapJunctions HeS3 nuc pA+ J bed 6 + HeLa-S3 nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 248 0 119 158 127 187 206 0 0 0 expression 1 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HeS3 nuc pA+ J\ subGroups view=Junctions cellType=t2HELAS3 localization=NUCLEUS rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHelas3NucleusPapJunctions\ type bed 6 +\ wgEncodeHaibTfbsH1hescMaxV0422111RawRep1 hESC Max V11 1 bigWig 1.000000 3461.000000 H1-hESC Max v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 248 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Max v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC Max V11 1\ subGroups view=RawSignal factor=MAX cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescMaxV0422111RawRep1\ type bigWig 1.000000 3461.000000\ wgEncodeUwTfbsHffCtcfStdRawRep1 HFF CTCF Sg 1 bigWig 1.000000 9482.000000 HFF CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 248 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HFF CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HFF CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HFF treatment=aNone rep=rep1\ track wgEncodeUwTfbsHffCtcfStdRawRep1\ type bigWig 1.000000 9482.000000\ wgEncodeSydhTfbsK562MaffIggrabSig K562 MafF IgR bigWig 1.000000 18097.000000 K562 MafF IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 248 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 MafF IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 MafF IgR\ subGroups view=Signal factor=MAFFM8194 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562MaffIggrabSig\ type bigWig 1.000000 18097.000000\ wgEncodeAwgTfbsHaibK562Rad21V0416102UniPk K562 RAD21 h narrowPeak K562 TFBS Uniform Peaks of Rad21 from ENCODE/HudsonAlpha/Analysis 1 248 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Rad21 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 RAD21 h\ subGroups tier=a10 cellType=a10K562 factor=RAD21 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Rad21V0416102UniPk\ wgEncodeRikenCageMcf7CytosolPapAlnRep4 MCF7 cyto pA+ A 4 bam MCF-7 cytosol polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN 0 248 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 cytosol polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel MCF7 cyto pA+ A 4\ subGroups view=Alignments cellType=t2MCF7 localization=cytosol rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageMcf7CytosolPapAlnRep4\ type bam\ wgEncodeOpenChromDnaseOlfneurosphereSig Olfact neuro DS bigWig 0.000000 2.391100 Olf neurosphere DNaseI HS Density Signal from ENCODE/Duke 2 248 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Olf neurosphere DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Olfact neuro DS\ subGroups view=SIG cellType=t3OLFACTORYNEUROSPHERE treatment=zNONE\ track wgEncodeOpenChromDnaseOlfneurosphereSig\ type bigWig 0.000000 2.391100\ wgEncodeCshlShortRnaSeqSknshCellShorttotalPlusRep4 SKSH cell + 2 bigWig 1.000000 8053986.000000 SK-N-SH whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 248 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH cell + 2\ subGroups view=PlusSignal cellType=t2SKNSH localization=CELL protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshCellShorttotalPlusRep4\ type bigWig 1.000000 8053986.000000\ wgEncodeUwHistoneGm12864H3k04me3StdHotspotsRep2 GM64 H3K4M3 Ht 2 broadPeak GM12864 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 249 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12864 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel GM64 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3GM12864 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm12864H3k04me3StdHotspotsRep2\ type broadPeak\ encTfChipPkENCFF628RLE H1-hESC CHD7 narrowPeak Transcription Factor ChIP-seq Peaks of CHD7 in H1-hESC from ENCODE 3 (ENCFF628RLE) 1 249 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of CHD7 in H1-hESC from ENCODE 3 (ENCFF628RLE)\ parent encTfChipPk off\ shortLabel H1-hESC CHD7\ subGroups cellType=H1-hESC factor=CHD7\ track encTfChipPkENCFF628RLE\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_ctss_fwd H9MelanocyticInduction_Day30Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_forward 0 249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep1%20%28H9EB-1%20d30%29.CNhs12903.12638-134G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12638-134G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_tpm_fwd H9MelanocyticInduction_Day30Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_forward 1 249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep1%20%28H9EB-1%20d30%29.CNhs12903.12638-134G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12638-134G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcfRawRep1 HCF Sg 1 bigWig 1.000000 38516.000000 HCF DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 249 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCF DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HCF Sg 1\ subGroups view=zRSig cellType=t3HCF rep=rep1 treatment=None\ track wgEncodeUwDnaseHcfRawRep1\ type bigWig 1.000000 38516.000000\ wgEncodeBroadHistoneHepg2Ezh239875Sig HepG2 EZH2 bigWig 0.040000 29916.919922 HepG2 EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 249 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HepG2 EZH2\ subGroups view=Signal factor=EZH239875 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2Ezh239875Sig\ type bigWig 0.040000 29916.919922\ wgEncodeCshlLongRnaSeqHelas3NucleusPapMinusRawSigRep1 HeS3 nuc pA+ - 1 bigWig 1.000000 191704.000000 HeLa-S3 nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 249 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeS3 nuc pA+ - 1\ subGroups view=MinusSignal cellType=t2HELAS3 localization=NUCLEUS rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHelas3NucleusPapMinusRawSigRep1\ type bigWig 1.000000 191704.000000\ wgEncodeHaibTfbsH1hescMaxV0422111PkRep2 hESC Max V11 2 broadPeak H1-hESC Max v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 249 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Max v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC Max V11 2\ subGroups view=Peaks factor=MAX cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescMaxV0422111PkRep2\ type broadPeak\ wgEncodeUwTfbsHffInputStdRawRep1 HFF In Sg 1 bigWig 1.000000 19349.000000 HFF Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 249 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HFF Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HFF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HFF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHffInputStdRawRep1\ type bigWig 1.000000 19349.000000\ wgEncodeSydhTfbsK562Mafkab50322IggrabPk K562 MafK IgR narrowPeak K562 MafK IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 249 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 MafK IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 MafK IgR\ subGroups view=Peaks factor=MAFK cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Mafkab50322IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Rad21UniPk K562 RAD21 y narrowPeak K562 TFBS Uniform Peaks of Rad21 from ENCODE/Yale/Analysis 1 249 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Rad21 from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 RAD21 y\ subGroups tier=a10 cellType=a10K562 factor=RAD21 lab=Yale\ track wgEncodeAwgTfbsSydhK562Rad21UniPk\ wgEncodeRikenCageMcf7NucleusPapTssHmm MCF7 nucl pA+ bed 6 MCF-7 nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 249 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel MCF7 nucl pA+\ subGroups view=TssHmm cellType=t2MCF7 localization=nucleus rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageMcf7NucleusPapTssHmm\ type bed 6\ wgEncodeOpenChromDnaseOlfneurosphereBaseOverlapSignal Olfact neuro OS bigWig 0.000000 495.000000 Olf neurosphere DNaseI HS Overlap Signal from ENCODE/Duke 2 249 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Olf neurosphere DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Olfact neuro OS\ subGroups view=SIGBO cellType=t3OLFACTORYNEUROSPHERE treatment=zNONE\ track wgEncodeOpenChromDnaseOlfneurosphereBaseOverlapSignal\ type bigWig 0.000000 495.000000\ wgEncodeCshlShortRnaSeqSknshCellTapContigs SKSH cell TAP C bed 6 SK-N-SH TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 249 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel SKSH cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t2SKNSH localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqSknshCellTapContigs\ type bed 6\ wgEncodeUwHistoneGm12864H3k04me3StdPkRep2 GM64 H3K4M3 Pk 2 narrowPeak GM12864 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 250 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12864 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel GM64 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3GM12864 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm12864H3k04me3StdPkRep2\ type narrowPeak\ encTfChipPkENCFF093VEE H1-hESC CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in H1-hESC from ENCODE 3 (ENCFF093VEE) 1 250 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in H1-hESC from ENCODE 3 (ENCFF093VEE)\ parent encTfChipPk on\ shortLabel H1-hESC CTCF 1\ subGroups cellType=H1-hESC factor=CTCF\ track encTfChipPkENCFF093VEE\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_ctss_rev H9MelanocyticInduction_Day30Br1- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_reverse 0 250 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep1%20%28H9EB-1%20d30%29.CNhs12903.12638-134G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12638-134G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_tpm_rev H9MelanocyticInduction_Day30Br1- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_reverse 1 250 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep1%20%28H9EB-1%20d30%29.CNhs12903.12638-134G1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12638-134G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcfHotspotsRep2 HCF Ht 2 broadPeak HCF DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 250 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCF DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HCF Ht 2\ subGroups view=Hot cellType=t3HCF rep=rep2 treatment=None\ track wgEncodeUwDnaseHcfHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneHepg2H2azStdPk HepG2 H2A.Z broadPeak HepG2 H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 250 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HepG2 H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H2azStdPk\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3NucleusPapMinusRawSigRep2 HeS3 nuc pA+ - 2 bigWig 1.000000 105697.000000 HeLa-S3 nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 250 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeS3 nuc pA+ - 2\ subGroups view=MinusSignal cellType=t2HELAS3 localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3NucleusPapMinusRawSigRep2\ type bigWig 1.000000 105697.000000\ wgEncodeHaibTfbsH1hescMaxV0422111RawRep2 hESC Max V11 2 bigWig 1.000000 4217.000000 H1-hESC Max v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 250 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Max v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC Max V11 2\ subGroups view=RawSignal factor=MAX cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescMaxV0422111RawRep2\ type bigWig 1.000000 4217.000000\ wgEncodeUwTfbsHffmycCtcfStdHotspotsRep1 HFMyc CTCF Ht 1 broadPeak HFF-Myc CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 250 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF-Myc CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel HFMyc CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HFFMYC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHffmycCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeSydhTfbsK562Mafkab50322IggrabSig K562 MafK IgR bigWig 1.000000 21737.000000 K562 MafK IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 250 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 MafK IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 MafK IgR\ subGroups view=Signal factor=MAFK cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Mafkab50322IggrabSig\ type bigWig 1.000000 21737.000000\ wgEncodeAwgTfbsBroadK562Rbbp5a300109aUniPk K562 RBBP5 narrowPeak K562 TFBS Uniform Peaks of RBBP5_(A300-109A) from ENCODE/Broad/Analysis 1 250 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of RBBP5_(A300-109A) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 RBBP5\ subGroups tier=a10 cellType=a10K562 factor=RBBP5 lab=Broad\ track wgEncodeAwgTfbsBroadK562Rbbp5a300109aUniPk\ wgEncodeRikenCageMcf7NucleusPapPlusRawRep3 MCF7 nucl pA+ + 3 bigWig 1.000000 3821720.000000 MCF-7 nucleus polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN 2 250 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 nucleus polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel MCF7 nucl pA+ + 3\ subGroups view=PlusRawSignal cellType=t2MCF7 localization=nucleus rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageMcf7NucleusPapPlusRawRep3\ type bigWig 1.000000 3821720.000000\ wgEncodeOpenChromDnaseOsteoblPk Osteoblasts Pk narrowPeak Osteoblasts DNaseI HS Peaks from ENCODE/Duke 3 250 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Osteoblasts DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Osteoblasts Pk\ subGroups view=Peaks cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeOpenChromDnaseOsteoblPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqSknshCellShorttotalTapMinusRep3 SKSH cell TAP - 1 bigWig 1.000000 33895712.000000 SK-N-SH TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 250 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH cell TAP - 1\ subGroups view=MinusSignal cellType=t2SKNSH localization=CELL protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshCellShorttotalTapMinusRep3\ type bigWig 1.000000 33895712.000000\ wgEncodeUwHistoneGm12864H3k04me3StdRawRep2 GM64 H3K4M3 Sg 2 bigWig 1.000000 5628.000000 GM12864 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 251 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12864 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel GM64 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3GM12864 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneGm12864H3k04me3StdRawRep2\ type bigWig 1.000000 5628.000000\ encTfChipPkENCFF402JJK H1-hESC CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in H1-hESC from ENCODE 3 (ENCFF402JJK) 1 251 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in H1-hESC from ENCODE 3 (ENCFF402JJK)\ parent encTfChipPk off\ shortLabel H1-hESC CTCF 2\ subGroups cellType=H1-hESC factor=CTCF\ track encTfChipPkENCFF402JJK\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_ctss_fwd H9MelanocyticInduction_Day30Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_forward 0 251 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep2%20%28H9EB-2%20d30%29.CNhs12836.12736-135H9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12736-135H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_tpm_fwd H9MelanocyticInduction_Day30Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_forward 1 251 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep2%20%28H9EB-2%20d30%29.CNhs12836.12736-135H9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12736-135H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcfPkRep2 HCF Pk 2 narrowPeak HCF DNaseI HS Peaks Rep 2 from ENCODE/UW 1 251 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCF DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HCF Pk 2\ subGroups view=Peaks cellType=t3HCF rep=rep2 treatment=None\ track wgEncodeUwDnaseHcfPkRep2\ type narrowPeak\ wgEncodeBroadHistoneHepg2H2azStdSig HepG2 H2A.Z bigWig 0.040000 25146.679688 HepG2 H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 251 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HepG2 H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H2azStdSig\ type bigWig 0.040000 25146.679688\ wgEncodeCshlLongRnaSeqHelas3NucleusPapPlusRawSigRep1 HeS3 nuc pA+ + 1 bigWig 1.000000 214832.000000 HeLa-S3 nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 251 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeS3 nuc pA+ + 1\ subGroups view=PlusSignal cellType=t2HELAS3 localization=NUCLEUS rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHelas3NucleusPapPlusRawSigRep1\ type bigWig 1.000000 214832.000000\ wgEncodeHaibTfbsH1hescNanogsc33759V0416102PkRep1 hESC NANOG V102 1 broadPeak H1-hESC NANOG v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 251 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC NANOG v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC NANOG V102 1\ subGroups view=Peaks factor=NANOGSC33759 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescNanogsc33759V0416102PkRep1\ type broadPeak\ wgEncodeUwTfbsHffmycCtcfStdPkRep1 HFMyc CTCF Pk 1 narrowPeak HFF-Myc CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 251 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF-Myc CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HFMyc CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HFFMYC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHffmycCtcfStdPkRep1\ type narrowPeak\ wgEncodeSydhTfbsK562MaxIggrabPk K562 Max IgR narrowPeak K562 Max IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 251 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Max IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 Max IgR\ subGroups view=Peaks factor=MAX cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562MaxIggrabPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Corestab24166IggrabUniPk K562 RCOR1 s narrowPeak K562 TFBS Uniform Peaks of COREST_(ab24166) from ENCODE/Stanford/Analysis 1 251 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of COREST_(ab24166) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 RCOR1 s\ subGroups tier=a10 cellType=a10K562 factor=RCOR1 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Corestab24166IggrabUniPk\ wgEncodeRikenCageMcf7NucleusPapPlusRawRep4 MCF7 nucl pA+ + 4 bigWig 1.000000 749609.000000 MCF-7 nucleus polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN 2 251 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 nucleus polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel MCF7 nucl pA+ + 4\ subGroups view=PlusRawSignal cellType=t2MCF7 localization=nucleus rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageMcf7NucleusPapPlusRawRep4\ type bigWig 1.000000 749609.000000\ wgEncodeOpenChromDnaseOsteoblSig Osteoblasts DS bigWig 0.000000 3.150400 Osteoblasts DNaseI HS Density Signal from ENCODE/Duke 2 251 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Osteoblasts DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Osteoblasts DS\ subGroups view=SIG cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeOpenChromDnaseOsteoblSig\ type bigWig 0.000000 3.150400\ wgEncodeCshlShortRnaSeqSknshCellShorttotalTapMinusRep4 SKSH cell TAP - 2 bigWig 1.000000 21201852.000000 SK-N-SH TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 251 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH cell TAP - 2\ subGroups view=MinusSignal cellType=t2SKNSH localization=CELL protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshCellShorttotalTapMinusRep4\ type bigWig 1.000000 21201852.000000\ wgEncodeUwHistoneGm12864InputStdRawRep1 GM64 In Sg 1 bigWig 1.000000 8541.000000 GM12864 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 252 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12864 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel GM64 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3GM12864 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12864InputStdRawRep1\ type bigWig 1.000000 8541.000000\ encTfChipPkENCFF220IXP H1-hESC EGR1 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in H1-hESC from ENCODE 3 (ENCFF220IXP) 1 252 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of EGR1 in H1-hESC from ENCODE 3 (ENCFF220IXP)\ parent encTfChipPk off\ shortLabel H1-hESC EGR1\ subGroups cellType=H1-hESC factor=EGR1\ track encTfChipPkENCFF220IXP\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_ctss_rev H9MelanocyticInduction_Day30Br2- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_reverse 0 252 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep2%20%28H9EB-2%20d30%29.CNhs12836.12736-135H9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12736-135H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_tpm_rev H9MelanocyticInduction_Day30Br2- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_reverse 1 252 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep2%20%28H9EB-2%20d30%29.CNhs12836.12736-135H9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12736-135H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcfRawRep2 HCF Sg 2 bigWig 1.000000 40946.000000 HCF DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 252 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCF DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HCF Sg 2\ subGroups view=zRSig cellType=t3HCF rep=rep2 treatment=None\ track wgEncodeUwDnaseHcfRawRep2\ type bigWig 1.000000 40946.000000\ wgEncodeBroadHistoneHepg2H3k04me1StdPk HepG2 H3K4m1 broadPeak HepG2 H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 252 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HepG2 H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k04me1StdPk\ type broadPeak\ wgEncodeCshlLongRnaSeqHelas3NucleusPapPlusRawSigRep2 HeS3 nuc pA+ + 2 bigWig 1.000000 148078.000000 HeLa-S3 nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 252 0 119 158 127 187 206 0 0 0 expression 0 color 0,119,158\ longLabel HeLa-S3 nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeS3 nuc pA+ + 2\ subGroups view=PlusSignal cellType=t2HELAS3 localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHelas3NucleusPapPlusRawSigRep2\ type bigWig 1.000000 148078.000000\ wgEncodeHaibTfbsH1hescNanogsc33759V0416102RawRep1 hESC NANOG V102 1 bigWig 0.337010 227.987000 H1-hESC NANOG v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 252 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC NANOG v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC NANOG V102 1\ subGroups view=RawSignal factor=NANOGSC33759 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescNanogsc33759V0416102RawRep1\ type bigWig 0.337010 227.987000\ wgEncodeUwTfbsHffmycCtcfStdRawRep1 HFMyc CTCF Sg 1 bigWig 1.000000 10059.000000 HFF-Myc CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 252 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HFF-Myc CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HFMyc CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HFFMYC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHffmycCtcfStdRawRep1\ type bigWig 1.000000 10059.000000\ wgEncodeSydhTfbsK562MaxIggrabSig K562 Max IgR bigWig 1.000000 5082.000000 K562 Max IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 252 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Max IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 Max IgR\ subGroups view=Signal factor=MAX cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562MaxIggrabSig\ type bigWig 1.000000 5082.000000\ wgEncodeAwgTfbsSydhK562Corestsc30189IggrabUniPk K562 RCOR1 s2 narrowPeak K562 TFBS Uniform Peaks of COREST_(sc-30189) from ENCODE/Stanford/Analysis 1 252 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of COREST_(sc-30189) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 RCOR1 s2\ subGroups tier=a10 cellType=a10K562 factor=RCOR1 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Corestsc30189IggrabUniPk\ wgEncodeRikenCageMcf7NucleusPapMinusRawRep3 MCF7 nucl pA+ - 3 bigWig 1.000000 80830.000000 MCF-7 nucleus polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN 2 252 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 nucleus polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel MCF7 nucl pA+ - 3\ subGroups view=MinusRawSignal cellType=t2MCF7 localization=nucleus rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageMcf7NucleusPapMinusRawRep3\ type bigWig 1.000000 80830.000000\ wgEncodeOpenChromDnaseOsteoblBaseOverlapSignal Osteoblasts OS bigWig 0.000000 604.000000 Osteoblasts DNaseI HS Overlap Signal from ENCODE/Duke 2 252 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Osteoblasts DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Osteoblasts OS\ subGroups view=SIGBO cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeOpenChromDnaseOsteoblBaseOverlapSignal\ type bigWig 0.000000 604.000000\ wgEncodeCshlShortRnaSeqSknshCellShorttotalTapPlusRep3 SKSH cell TAP + 1 bigWig 1.000000 8519202.000000 SK-N-SH TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 252 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH cell TAP + 1\ subGroups view=PlusSignal cellType=t2SKNSH localization=CELL protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshCellShorttotalTapPlusRep3\ type bigWig 1.000000 8519202.000000\ wgEncodeUwHistoneGm12865H3k04me3StdHotspotsRep1 GM65 H3K4M3 Ht 1 broadPeak GM12865 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 253 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12865 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel GM65 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3GM12865 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12865H3k04me3StdHotspotsRep1\ type broadPeak\ encTfChipPkENCFF456JEW H1-hESC EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in H1-hESC from ENCODE 3 (ENCFF456JEW) 1 253 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in H1-hESC from ENCODE 3 (ENCFF456JEW)\ parent encTfChipPk off\ shortLabel H1-hESC EP300 1\ subGroups cellType=H1-hESC factor=EP300\ track encTfChipPkENCFF456JEW\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_ctss_fwd H9MelanocyticInduction_Day30Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_forward 0 253 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep3%20%28H9EB-3%20d30%29.CNhs12918.12834-137A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12834-137A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_tpm_fwd H9MelanocyticInduction_Day30Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_forward 1 253 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep3%20%28H9EB-3%20d30%29.CNhs12918.12834-137A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12834-137A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcfaaHotspotsRep1 HCFaa Ht 1 broadPeak HCFaa DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 253 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCFaa DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HCFaa Ht 1\ subGroups view=Hot cellType=t3HCFAA rep=rep1 treatment=None\ track wgEncodeUwDnaseHcfaaHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaAlnRep1 HeG2 cel pA- A 1 bam HepG2 whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 253 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeG2 cel pA- A 1\ subGroups view=Alignments cellType=t2HEPG2 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaAlnRep1\ type bam\ wgEncodeBroadHistoneHepg2H3k04me1StdSig HepG2 H3K4m1 bigWig 0.040000 5993.879883 HepG2 H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 253 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HepG2 H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k04me1StdSig\ type bigWig 0.040000 5993.879883\ wgEncodeHaibTfbsH1hescNanogsc33759V0416102PkRep2 hESC NANOG V102 2 broadPeak H1-hESC NANOG v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 253 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC NANOG v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC NANOG V102 2\ subGroups view=Peaks factor=NANOGSC33759 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescNanogsc33759V0416102PkRep2\ type broadPeak\ wgEncodeUwTfbsHffmycCtcfStdHotspotsRep2 HFMyc CTCF Ht 2 broadPeak HFF-Myc CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 253 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF-Myc CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel HFMyc CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3HFFMYC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHffmycCtcfStdHotspotsRep2\ type broadPeak\ wgEncodeSydhTfbsK562MaxStdPk K562 Max Std narrowPeak K562 Max Standard ChIP-seq Peaks from ENCODE/SYDH 3 253 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Max Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 Max Std\ subGroups view=Peaks factor=MAX cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562MaxStdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562NelfeUniPk K562 RDBP narrowPeak K562 TFBS Uniform Peaks of NELFe from ENCODE/Harvard/Analysis 1 253 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of NELFe from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 RDBP\ subGroups tier=a10 cellType=a10K562 factor=RDBP lab=Harvard\ track wgEncodeAwgTfbsSydhK562NelfeUniPk\ wgEncodeRikenCageMcf7NucleusPapMinusRawRep4 MCF7 nucl pA+ - 4 bigWig 1.000000 22476.000000 MCF-7 nucleus polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN 2 253 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 nucleus polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel MCF7 nucl pA+ - 4\ subGroups view=MinusRawSignal cellType=t2MCF7 localization=nucleus rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageMcf7NucleusPapMinusRawRep4\ type bigWig 1.000000 22476.000000\ wgEncodeOpenChromDnasePanisdPk PanIsletD Pk narrowPeak PanIsletD DNaseI HS Peaks from ENCODE/Duke 3 253 0 0 0 127 127 127 1 0 0 regulation 1 longLabel PanIsletD DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel PanIsletD Pk\ subGroups view=Peaks cellType=t3PANISLETD treatment=zNONE\ track wgEncodeOpenChromDnasePanisdPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqSknshCellShorttotalTapPlusRep4 SKSH cell TAP + 2 bigWig 1.000000 8371917.000000 SK-N-SH TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 253 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH cell TAP + 2\ subGroups view=PlusSignal cellType=t2SKNSH localization=CELL protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshCellShorttotalTapPlusRep4\ type bigWig 1.000000 8371917.000000\ wgEncodeUwHistoneGm12865H3k04me3StdPkRep1 GM65 H3K4M3 Pk 1 narrowPeak GM12865 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 254 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12865 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel GM65 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3GM12865 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12865H3k04me3StdPkRep1\ type narrowPeak\ encTfChipPkENCFF843SYD H1-hESC EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in H1-hESC from ENCODE 3 (ENCFF843SYD) 1 254 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in H1-hESC from ENCODE 3 (ENCFF843SYD)\ parent encTfChipPk off\ shortLabel H1-hESC EP300 2\ subGroups cellType=H1-hESC factor=EP300\ track encTfChipPkENCFF843SYD\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_ctss_rev H9MelanocyticInduction_Day30Br3- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_reverse 0 254 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep3%20%28H9EB-3%20d30%29.CNhs12918.12834-137A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12834-137A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_tpm_rev H9MelanocyticInduction_Day30Br3- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_reverse 1 254 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep3%20%28H9EB-3%20d30%29.CNhs12918.12834-137A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12834-137A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcfaaPkRep1 HCFaa Pk 1 narrowPeak HCFaa DNaseI HS Peaks Rep 1 from ENCODE/UW 1 254 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCFaa DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HCFaa Pk 1\ subGroups view=Peaks cellType=t3HCFAA rep=rep1 treatment=None\ track wgEncodeUwDnaseHcfaaPkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaAlnRep2 HeG2 cel pA- A 2 bam HepG2 whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 254 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeG2 cel pA- A 2\ subGroups view=Alignments cellType=t2HEPG2 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaAlnRep2\ type bam\ wgEncodeBroadHistoneHepg2H3k4me2StdPk HepG2 H3K4m2 broadPeak HepG2 H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 254 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HepG2 H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k4me2StdPk\ type broadPeak\ wgEncodeHaibTfbsH1hescNanogsc33759V0416102RawRep2 hESC NANOG V102 2 bigWig 0.136390 690.064026 H1-hESC NANOG v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 254 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC NANOG v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC NANOG V102 2\ subGroups view=RawSignal factor=NANOGSC33759 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescNanogsc33759V0416102RawRep2\ type bigWig 0.136390 690.064026\ wgEncodeUwTfbsHffmycCtcfStdPkRep2 HFMyc CTCF Pk 2 narrowPeak HFF-Myc CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 254 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF-Myc CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HFMyc CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3HFFMYC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHffmycCtcfStdPkRep2\ type narrowPeak\ wgEncodeSydhTfbsK562MaxStdSig K562 Max Std bigWig 0.000000 16605.800781 K562 Max Standard ChIP-seq Signal from ENCODE/SYDH 2 254 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Max Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 Max Std\ subGroups view=Signal factor=MAX cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562MaxStdSig\ type bigWig 0.000000 16605.800781\ wgEncodeAwgTfbsHaibK562NrsfV0416102UniPk K562 REST narrowPeak K562 TFBS Uniform Peaks of NRSF from ENCODE/HudsonAlpha/Analysis 1 254 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of NRSF from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 REST\ subGroups tier=a10 cellType=a10K562 factor=REST lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562NrsfV0416102UniPk\ wgEncodeRikenCageMcf7NucleusPapAlnRep3 MCF7 nucl pA+ A 3 bam MCF-7 nucleus polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN 0 254 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 nucleus polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel MCF7 nucl pA+ A 3\ subGroups view=Alignments cellType=t2MCF7 localization=nucleus rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageMcf7NucleusPapAlnRep3\ type bam\ wgEncodeOpenChromDnasePanisdSig PanIsletD DS bigWig 0.000000 1.462100 PanIsletD DNaseI HS Density Signal from ENCODE/Duke 2 254 0 0 0 127 127 127 1 0 0 regulation 0 longLabel PanIsletD DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel PanIsletD DS\ subGroups view=SIG cellType=t3PANISLETD treatment=zNONE\ track wgEncodeOpenChromDnasePanisdSig\ type bigWig 0.000000 1.462100\ wgEncodeCshlShortRnaSeqSknshCytosolCiptapContigs SKSH cyto CIP C bed 6 SK-N-SH CIP-TAP cytosol small RNA-seq Contigs from ENCODE/CSHL 2 254 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH CIP-TAP cytosol small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel SKSH cyto CIP C\ subGroups view=Contigs rep=Pooled cellType=t2SKNSH localization=CYTOSOL protocol=CIPTAP rank=none\ track wgEncodeCshlShortRnaSeqSknshCytosolCiptapContigs\ type bed 6\ wgEncodeUwHistoneGm12865H3k04me3StdRawRep1 GM65 H3K4M3 Sg 1 bigWig 1.000000 3776.000000 GM12865 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 255 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12865 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel GM65 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3GM12865 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12865H3k04me3StdRawRep1\ type bigWig 1.000000 3776.000000\ encTfChipPkENCFF418RZE H1-hESC FOSL1 narrowPeak Transcription Factor ChIP-seq Peaks of FOSL1 in H1-hESC from ENCODE 3 (ENCFF418RZE) 1 255 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of FOSL1 in H1-hESC from ENCODE 3 (ENCFF418RZE)\ parent encTfChipPk off\ shortLabel H1-hESC FOSL1\ subGroups cellType=H1-hESC factor=FOSL1\ track encTfChipPkENCFF418RZE\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_ctss_fwd H9MelanocyticInduction_Day34Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_forward 0 255 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep1%20%28H9EB-1%20d34%29.CNhs12904.12639-134G2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12639-134G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_tpm_fwd H9MelanocyticInduction_Day34Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_forward 1 255 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep1%20%28H9EB-1%20d34%29.CNhs12904.12639-134G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12639-134G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcfaaRawRep1 HCFaa Sg 1 bigWig 1.000000 33937.000000 HCFaa DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 255 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCFaa DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HCFaa Sg 1\ subGroups view=zRSig cellType=t3HCFAA rep=rep1 treatment=None\ track wgEncodeUwDnaseHcfaaRawRep1\ type bigWig 1.000000 33937.000000\ wgEncodeCshlLongRnaSeqHepg2CellPamContigs HeG2 cel pA- C bed 6 + HepG2 whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 255 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HeG2 cel pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HEPG2 localization=CELL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqHepg2CellPamContigs\ type bed 6 +\ wgEncodeBroadHistoneHepg2H3k4me2StdSig HepG2 H3K4m2 bigWig 0.040000 4438.439941 HepG2 H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 255 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HepG2 H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k4me2StdSig\ type bigWig 0.040000 4438.439941\ wgEncodeHaibTfbsH1hescNrsfV0416102PkRep1 hESC NRSF V102 1 broadPeak H1-hESC NRSF v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 255 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC NRSF v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC NRSF V102 1\ subGroups view=Peaks factor=NRSF cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescNrsfV0416102PkRep1\ type broadPeak\ wgEncodeUwTfbsHffmycCtcfStdRawRep2 HFMyc CTCF Sg 2 bigWig 1.000000 15556.000000 HFF-Myc CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 255 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HFF-Myc CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HFMyc CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3HFFMYC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHffmycCtcfStdRawRep2\ type bigWig 1.000000 15556.000000\ wgEncodeSydhTfbsK562Mazab85725IggrabPk K562 MAZ IgR narrowPeak K562 MAZ IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 255 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 MAZ IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 MAZ IgR\ subGroups view=Peaks factor=MAZAB85725 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Mazab85725IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Rfx5IggrabUniPk K562 RFX5 narrowPeak K562 TFBS Uniform Peaks of RFX5_(200-401-194) from ENCODE/Stanford/Analysis 1 255 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of RFX5_(200-401-194) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 RFX5\ subGroups tier=a10 cellType=a10K562 factor=RFX5 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Rfx5IggrabUniPk\ wgEncodeRikenCageMcf7NucleusPapAlnRep4 MCF7 nucl pA+ A 4 bam MCF-7 nucleus polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN 0 255 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 nucleus polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel MCF7 nucl pA+ A 4\ subGroups view=Alignments cellType=t2MCF7 localization=nucleus rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageMcf7NucleusPapAlnRep4\ type bam\ wgEncodeOpenChromDnasePanisdBaseOverlapSignal PanIsletD OS bigWig 0.000000 415.000000 PanIsletD DNaseI HS Overlap Signal from ENCODE/Duke 2 255 0 0 0 127 127 127 1 0 0 regulation 0 longLabel PanIsletD DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel PanIsletD OS\ subGroups view=SIGBO cellType=t3PANISLETD treatment=zNONE\ track wgEncodeOpenChromDnasePanisdBaseOverlapSignal\ type bigWig 0.000000 415.000000\ wgEncodeCshlShortRnaSeqSknshCytosolShorttotalCiptapMinusRep3 SKSH cyto CIP - 1 bigWig 1.000000 4685140.000000 SK-N-SH CIP-TAP cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 255 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH CIP-TAP cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH cyto CIP - 1\ subGroups view=MinusSignal cellType=t2SKNSH localization=CYTOSOL protocol=CIPTAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshCytosolShorttotalCiptapMinusRep3\ type bigWig 1.000000 4685140.000000\ wgEncodeUwHistoneGm12865H3k04me3StdHotspotsRep2 GM65 H3K4M3 Ht 2 broadPeak GM12865 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 256 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12865 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel GM65 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3GM12865 treatment=zNone rep=rep2\ track wgEncodeUwHistoneGm12865H3k04me3StdHotspotsRep2\ type broadPeak\ encTfChipPkENCFF894MNP H1-hESC GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in H1-hESC from ENCODE 3 (ENCFF894MNP) 1 256 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of GABPA in H1-hESC from ENCODE 3 (ENCFF894MNP)\ parent encTfChipPk off\ shortLabel H1-hESC GABPA\ subGroups cellType=H1-hESC factor=GABPA\ track encTfChipPkENCFF894MNP\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_ctss_rev H9MelanocyticInduction_Day34Br1- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_reverse 0 256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep1%20%28H9EB-1%20d34%29.CNhs12904.12639-134G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12639-134G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_tpm_rev H9MelanocyticInduction_Day34Br1- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_reverse 1 256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep1%20%28H9EB-1%20d34%29.CNhs12904.12639-134G2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12639-134G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcfaaHotspotsRep2 HCFaa Ht 2 broadPeak HCFaa DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 256 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCFaa DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HCFaa Ht 2\ subGroups view=Hot cellType=t3HCFAA rep=rep2 treatment=None\ track wgEncodeUwDnaseHcfaaHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHepg2CellPamJunctions HeG2 cel pA- J bed 6 + HepG2 whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 256 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HeG2 cel pA- J\ subGroups view=Junctions cellType=t2HEPG2 localization=CELL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHepg2CellPamJunctions\ type bed 6 +\ wgEncodeBroadHistoneHepg2H3k4me3StdPk HepG2 H3K4m3 broadPeak HepG2 H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 256 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HepG2 H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k4me3StdPk\ type broadPeak\ wgEncodeHaibTfbsH1hescNrsfV0416102RawRep1 hESC NRSF V102 1 bigWig 0.215549 181.169006 H1-hESC NRSF v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 256 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC NRSF v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC NRSF V102 1\ subGroups view=RawSignal factor=NRSF cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescNrsfV0416102RawRep1\ type bigWig 0.215549 181.169006\ wgEncodeUwTfbsHffmycInputStdRawRep1 HFMyc In Sg 1 bigWig 1.000000 18402.000000 HFF-Myc Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 256 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HFF-Myc Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HFMyc In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HFFMYC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHffmycInputStdRawRep1\ type bigWig 1.000000 18402.000000\ wgEncodeSydhTfbsK562Mazab85725IggrabSig K562 MAZ IgR bigWig 1.000000 13817.000000 K562 MAZ IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 256 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 MAZ IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 MAZ IgR\ subGroups view=Signal factor=MAZAB85725 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Mazab85725IggrabSig\ type bigWig 1.000000 13817.000000\ wgEncodeAwgTfbsSydhK562Rpc155UniPk K562 RPC155 narrowPeak K562 TFBS Uniform Peaks of RPC155 from ENCODE/Harvard/Analysis 1 256 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of RPC155 from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 RPC155\ subGroups tier=a10 cellType=a10K562 factor=RPC155 lab=Harvard\ track wgEncodeAwgTfbsSydhK562Rpc155UniPk\ wgEncodeRikenCageMcf7CellPapTssHmm MCF7 cell pA+ bed 6 MCF-7 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 256 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel MCF7 cell pA+\ subGroups view=TssHmm cellType=t2MCF7 localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageMcf7CellPapTssHmm\ type bed 6\ wgEncodeOpenChromDnasePanisletsPk PanIslets Pk narrowPeak PanIslets DNaseI HS Peaks from ENCODE/Duke 3 256 0 0 0 127 127 127 1 0 0 regulation 1 longLabel PanIslets DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel PanIslets Pk\ subGroups view=Peaks cellType=t3PANISLETS treatment=zNONE\ track wgEncodeOpenChromDnasePanisletsPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqSknshCytosolShorttotalCiptapMinusRep4 SKSH cyto CIP - 2 bigWig 1.000000 7955198.000000 SK-N-SH CIP-TAP cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 256 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH CIP-TAP cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH cyto CIP - 2\ subGroups view=MinusSignal cellType=t2SKNSH localization=CYTOSOL protocol=CIPTAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshCytosolShorttotalCiptapMinusRep4\ type bigWig 1.000000 7955198.000000\ wgEncodeUwHistoneGm12865H3k04me3StdPkRep2 GM65 H3K4M3 Pk 2 narrowPeak GM12865 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 257 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12865 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel GM65 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3GM12865 treatment=zNone rep=rep2\ track wgEncodeUwHistoneGm12865H3k04me3StdPkRep2\ type narrowPeak\ encTfChipPkENCFF468CFJ H1-hESC HDAC2 1 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in H1-hESC from ENCODE 3 (ENCFF468CFJ) 1 257 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in H1-hESC from ENCODE 3 (ENCFF468CFJ)\ parent encTfChipPk on\ shortLabel H1-hESC HDAC2 1\ subGroups cellType=H1-hESC factor=HDAC2\ track encTfChipPkENCFF468CFJ\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_ctss_fwd H9MelanocyticInduction_Day34Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_forward 0 257 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep2%20%28H9EB-2%20d34%29.CNhs12906.12737-135I1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12737-135I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_tpm_fwd H9MelanocyticInduction_Day34Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_forward 1 257 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep2%20%28H9EB-2%20d34%29.CNhs12906.12737-135I1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12737-135I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcfaaPkRep2 HCFaa Pk 2 narrowPeak HCFaa DNaseI HS Peaks Rep 2 from ENCODE/UW 1 257 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCFaa DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HCFaa Pk 2\ subGroups view=Peaks cellType=t3HCFAA rep=rep2 treatment=None\ track wgEncodeUwDnaseHcfaaPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaMinusRawSigRep1 HeG2 cel pA- - 1 bigWig 1.000000 695167.000000 HepG2 whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 257 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeG2 cel pA- - 1\ subGroups view=MinusSignal cellType=t2HEPG2 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 695167.000000\ wgEncodeBroadHistoneHepg2H3k4me3StdSig HepG2 H3K4m3 bigWig 0.040000 4277.000000 HepG2 H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 257 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HepG2 H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k4me3StdSig\ type bigWig 0.040000 4277.000000\ wgEncodeHaibTfbsH1hescNrsfV0416102PkRep2 hESC NRSF V102 2 broadPeak H1-hESC NRSF v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 257 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC NRSF v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC NRSF V102 2\ subGroups view=Peaks factor=NRSF cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescNrsfV0416102PkRep2\ type broadPeak\ wgEncodeUwTfbsHl60CtcfStdHotspotsRep1 HL60 CTCF Ht 1 broadPeak HL-60 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 257 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HL60 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HL60 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHl60CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeSydhTfbsK562Mxi1af4185IggrabPk K562 Mxi1 IgR narrowPeak K562 Mxi1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 257 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Mxi1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 Mxi1 IgR\ subGroups view=Peaks factor=MXI1 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Mxi1af4185IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsBroadK562Sap3039731UniPk K562 SAP30 narrowPeak K562 TFBS Uniform Peaks of SAP30_(39731) from ENCODE/Broad/Analysis 1 257 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of SAP30_(39731) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 SAP30\ subGroups tier=a10 cellType=a10K562 factor=SAP30 lab=Broad\ track wgEncodeAwgTfbsBroadK562Sap3039731UniPk\ wgEncodeRikenCageMcf7CellPapPlusSignalRep1 MCF7 cell pA+ + 1 bigWig 0.040000 24800.419922 MCF-7 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 257 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel MCF7 cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t2MCF7 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageMcf7CellPapPlusSignalRep1\ type bigWig 0.040000 24800.419922\ wgEncodeOpenChromDnasePanisletsSig PanIslets DS bigWig 0.000000 1.691300 PanIslets DNaseI HS Density Signal from ENCODE/Duke 2 257 0 0 0 127 127 127 1 0 0 regulation 0 longLabel PanIslets DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel PanIslets DS\ subGroups view=SIG cellType=t3PANISLETS treatment=zNONE\ track wgEncodeOpenChromDnasePanisletsSig\ type bigWig 0.000000 1.691300\ wgEncodeCshlShortRnaSeqSknshCytosolShorttotalCiptapPlusRep3 SKSH cyto CIP + 1 bigWig 1.000000 4684785.000000 SK-N-SH CIP-TAP cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 257 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH CIP-TAP cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH cyto CIP + 1\ subGroups view=PlusSignal cellType=t2SKNSH localization=CYTOSOL protocol=CIPTAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshCytosolShorttotalCiptapPlusRep3\ type bigWig 1.000000 4684785.000000\ wgEncodeUwHistoneGm12865H3k04me3StdRawRep2 GM65 H3K4M3 Sg 2 bigWig 1.000000 7990.000000 GM12865 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 258 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12865 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel GM65 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3GM12865 treatment=zNone rep=rep2\ track wgEncodeUwHistoneGm12865H3k04me3StdRawRep2\ type bigWig 1.000000 7990.000000\ encTfChipPkENCFF902CVS H1-hESC HDAC2 2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in H1-hESC from ENCODE 3 (ENCFF902CVS) 1 258 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in H1-hESC from ENCODE 3 (ENCFF902CVS)\ parent encTfChipPk off\ shortLabel H1-hESC HDAC2 2\ subGroups cellType=H1-hESC factor=HDAC2\ track encTfChipPkENCFF902CVS\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_ctss_rev H9MelanocyticInduction_Day34Br2- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_reverse 0 258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep2%20%28H9EB-2%20d34%29.CNhs12906.12737-135I1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12737-135I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_tpm_rev H9MelanocyticInduction_Day34Br2- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_reverse 1 258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep2%20%28H9EB-2%20d34%29.CNhs12906.12737-135I1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12737-135I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcfaaRawRep2 HCFaa Sg 2 bigWig 1.000000 22612.000000 HCFaa DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 258 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCFaa DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HCFaa Sg 2\ subGroups view=zRSig cellType=t3HCFAA rep=rep2 treatment=None\ track wgEncodeUwDnaseHcfaaRawRep2\ type bigWig 1.000000 22612.000000\ wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaMinusRawSigRep2 HeG2 cel pA- - 2 bigWig 1.000000 1212148.000000 HepG2 whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 258 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeG2 cel pA- - 2\ subGroups view=MinusSignal cellType=t2HEPG2 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 1212148.000000\ wgEncodeBroadHistoneHepg2H3k9acStdPk HepG2 H3K9ac broadPeak HepG2 H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 258 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HepG2 H3K9ac\ subGroups view=Peaks factor=H3K09AC cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k9acStdPk\ type broadPeak\ wgEncodeHaibTfbsH1hescNrsfV0416102RawRep2 hESC NRSF V102 2 bigWig 0.152323 404.457001 H1-hESC NRSF v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 258 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC NRSF v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC NRSF V102 2\ subGroups view=RawSignal factor=NRSF cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescNrsfV0416102RawRep2\ type bigWig 0.152323 404.457001\ wgEncodeUwTfbsHl60CtcfStdPkRep1 HL60 CTCF Pk 1 narrowPeak HL-60 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 258 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HL60 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HL60 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHl60CtcfStdPkRep1\ type narrowPeak\ wgEncodeSydhTfbsK562Mxi1af4185IggrabSig K562 Mxi1 IgR bigWig 1.000000 15465.000000 K562 Mxi1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 258 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Mxi1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 Mxi1 IgR\ subGroups view=Signal factor=MXI1 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Mxi1af4185IggrabSig\ type bigWig 1.000000 15465.000000\ wgEncodeAwgTfbsSydhK562Setdb1UcdUniPk K562 SETDB1 narrowPeak K562 TFBS Uniform Peaks of SETDB1 from ENCODE/USC/Analysis 1 258 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of SETDB1 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 SETDB1\ subGroups tier=a10 cellType=a10K562 factor=SETDB1 lab=USC\ track wgEncodeAwgTfbsSydhK562Setdb1UcdUniPk\ wgEncodeRikenCageMcf7CellPapPlusRawRep2 MCF7 cell pA+ + 2 bigWig 1.000000 244433.000000 MCF-7 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 258 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel MCF7 cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t2MCF7 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageMcf7CellPapPlusRawRep2\ type bigWig 1.000000 244433.000000\ wgEncodeOpenChromDnasePanisletsBaseOverlapSignal PanIslets OS bigWig 0.000000 357.000000 PanIslets DNaseI HS Overlap Signal from ENCODE/Duke 2 258 0 0 0 127 127 127 1 0 0 regulation 0 longLabel PanIslets DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel PanIslets OS\ subGroups view=SIGBO cellType=t3PANISLETS treatment=zNONE\ track wgEncodeOpenChromDnasePanisletsBaseOverlapSignal\ type bigWig 0.000000 357.000000\ wgEncodeCshlShortRnaSeqSknshCytosolShorttotalCiptapPlusRep4 SKSH cyto CIP + 2 bigWig 1.000000 3592191.000000 SK-N-SH CIP-TAP cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 258 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH CIP-TAP cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH cyto CIP + 2\ subGroups view=PlusSignal cellType=t2SKNSH localization=CYTOSOL protocol=CIPTAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshCytosolShorttotalCiptapPlusRep4\ type bigWig 1.000000 3592191.000000\ wgEncodeUwHistoneGm12865InputStdRawRep1 GM65 In Sg 1 bigWig 1.000000 9831.000000 GM12865 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 259 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12865 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel GM65 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3GM12865 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12865InputStdRawRep1\ type bigWig 1.000000 9831.000000\ encTfChipPkENCFF012LET H1-hESC HDAC6 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC6 in H1-hESC from ENCODE 3 (ENCFF012LET) 1 259 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of HDAC6 in H1-hESC from ENCODE 3 (ENCFF012LET)\ parent encTfChipPk off\ shortLabel H1-hESC HDAC6\ subGroups cellType=H1-hESC factor=HDAC6\ track encTfChipPkENCFF012LET\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_ctss_fwd H9MelanocyticInduction_Day34Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_forward 0 259 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep3%20%28H9EB-3%20d34%29.CNhs12919.12835-137A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12835-137A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_tpm_fwd H9MelanocyticInduction_Day34Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_forward 1 259 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep3%20%28H9EB-3%20d34%29.CNhs12919.12835-137A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12835-137A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcmHotspotsRep1 HCM Ht 1 broadPeak HCM DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 259 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HCM Ht 1\ subGroups view=Hot cellType=t3HCM rep=rep1 treatment=None\ track wgEncodeUwDnaseHcmHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaPlusRawSigRep1 HeG2 cel pA- + 1 bigWig 1.000000 1255590.000000 HepG2 whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 259 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeG2 cel pA- + 1\ subGroups view=PlusSignal cellType=t2HEPG2 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 1255590.000000\ wgEncodeBroadHistoneHepg2H3k9acStdSig HepG2 H3K9ac bigWig 0.040000 10882.879883 HepG2 H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 259 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HepG2 H3K9ac\ subGroups view=Signal factor=H3K09AC cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k9acStdSig\ type bigWig 0.040000 10882.879883\ wgEncodeHaibTfbsH1hescP300V0416102PkRep1 hESC p300 V102 1 broadPeak H1-hESC p300 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 259 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC p300 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC p300 V102 1\ subGroups view=Peaks factor=P300 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescP300V0416102PkRep1\ type broadPeak\ wgEncodeUwTfbsHl60CtcfStdRawRep1 HL60 CTCF Sg 1 bigWig 1.000000 2968.000000 HL-60 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 259 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HL-60 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HL60 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HL60 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHl60CtcfStdRawRep1\ type bigWig 1.000000 2968.000000\ wgEncodeSydhTfbsK562NelfeStdPk K562 NELF Std narrowPeak K562 NELFe Standard ChIP-seq Peaks from ENCODE/SYDH 3 259 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 NELFe Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 NELF Std\ subGroups view=Peaks factor=NELFE cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562NelfeStdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Setdb1MnasedUcdUniPk K562+MNase SETDB1 narrowPeak K562 (MNaseD) TFBS Uniform Peaks of SETDB1 from ENCODE/USC/Analysis 1 259 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (MNaseD) TFBS Uniform Peaks of SETDB1 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+MNase SETDB1\ subGroups tier=a10 cellType=a10K562 factor=SETDB1 lab=USC\ track wgEncodeAwgTfbsSydhK562Setdb1MnasedUcdUniPk\ wgEncodeRikenCageMcf7CellPapMinusSignalRep1 MCF7 cell pA+ - 1 bigWig 0.040000 6428.500000 MCF-7 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 259 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel MCF7 cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t2MCF7 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageMcf7CellPapMinusSignalRep1\ type bigWig 0.040000 6428.500000\ wgEncodeOpenChromDnasePhtePk pHTE Pk narrowPeak pHTE DNaseI HS Peaks from ENCODE/Duke 3 259 0 0 0 127 127 127 1 0 0 regulation 1 longLabel pHTE DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel pHTE Pk\ subGroups view=Peaks cellType=t3PHTE treatment=zNONE\ track wgEncodeOpenChromDnasePhtePk\ type narrowPeak\ wgEncodeCshlShortRnaSeqSknshCytosolContigs SKSH cyto C bed 6 SK-N-SH cytosol small RNA-seq Contigs from ENCODE/CSHL 2 259 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH cytosol small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel SKSH cyto C\ subGroups view=Contigs rep=Pooled cellType=t2SKNSH localization=CYTOSOL protocol=NONE rank=none\ track wgEncodeCshlShortRnaSeqSknshCytosolContigs\ type bed 6\ wgEncodeUwHistoneGm12875H3k04me3StdHotspotsRep1 GM75 H3K4M3 Ht 1 broadPeak GM12875 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 260 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12875 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel GM75 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3GM12875 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12875H3k04me3StdHotspotsRep1\ type broadPeak\ encTfChipPkENCFF402ELS H1-hESC JUN narrowPeak Transcription Factor ChIP-seq Peaks of JUN in H1-hESC from ENCODE 3 (ENCFF402ELS) 1 260 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of JUN in H1-hESC from ENCODE 3 (ENCFF402ELS)\ parent encTfChipPk off\ shortLabel H1-hESC JUN\ subGroups cellType=H1-hESC factor=JUN\ track encTfChipPkENCFF402ELS\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_ctss_rev H9MelanocyticInduction_Day34Br3- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_reverse 0 260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep3%20%28H9EB-3%20d34%29.CNhs12919.12835-137A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12835-137A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_tpm_rev H9MelanocyticInduction_Day34Br3- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_reverse 1 260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep3%20%28H9EB-3%20d34%29.CNhs12919.12835-137A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12835-137A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcmPkRep1 HCM Pk 1 narrowPeak HCM DNaseI HS Peaks Rep 1 from ENCODE/UW 1 260 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HCM Pk 1\ subGroups view=Peaks cellType=t3HCM rep=rep1 treatment=None\ track wgEncodeUwDnaseHcmPkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaPlusRawSigRep2 HeG2 cel pA- + 2 bigWig 1.000000 1251920.000000 HepG2 whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 260 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeG2 cel pA- + 2\ subGroups view=PlusSignal cellType=t2HEPG2 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 1251920.000000\ wgEncodeBroadHistoneHepg2H3k09me3Pk HepG2 H3K9m3 broadPeak HepG2 H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 260 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HepG2 H3K9m3\ subGroups view=Peaks factor=H3K09ME3 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k09me3Pk\ type broadPeak\ wgEncodeHaibTfbsH1hescP300V0416102RawRep1 hESC p300 V102 1 bigWig 0.308271 261.721985 H1-hESC p300 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 260 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC p300 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC p300 V102 1\ subGroups view=RawSignal factor=P300 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescP300V0416102RawRep1\ type bigWig 0.308271 261.721985\ wgEncodeUwTfbsHl60InputStdRawRep1 HL60 In Sg 1 bigWig 1.000000 9223.000000 HL-60 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 260 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HL-60 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HL60 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HL60 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHl60InputStdRawRep1\ type bigWig 1.000000 9223.000000\ wgEncodeSydhTfbsK562NelfeStdSig K562 NELF Std bigWig 0.000000 20343.000000 K562 NELFe Standard ChIP-seq Signal from ENCODE/SYDH 2 260 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 NELFe Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 NELF Std\ subGroups view=Signal factor=NELFE cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562NelfeStdSig\ type bigWig 0.000000 20343.000000\ wgEncodeAwgTfbsHaibK562Sin3ak20V0416101UniPk K562 SIN3AK20 narrowPeak K562 TFBS Uniform Peaks of Sin3Ak-20 from ENCODE/HudsonAlpha/Analysis 1 260 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Sin3Ak-20 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 SIN3AK20\ subGroups tier=a10 cellType=a10K562 factor=SIN3AK20 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Sin3ak20V0416101UniPk\ wgEncodeRikenCageMcf7CellPapMinusRawRep2 MCF7 cell pA+ - 2 bigWig 1.000000 90472.000000 MCF-7 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 260 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel MCF7 cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t2MCF7 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageMcf7CellPapMinusRawRep2\ type bigWig 1.000000 90472.000000\ wgEncodeOpenChromDnasePhteSig pHTE DS bigWig 0.000000 2.165800 pHTE DNaseI HS Density Signal from ENCODE/Duke 2 260 0 0 0 127 127 127 1 0 0 regulation 0 longLabel pHTE DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel pHTE DS\ subGroups view=SIG cellType=t3PHTE treatment=zNONE\ track wgEncodeOpenChromDnasePhteSig\ type bigWig 0.000000 2.165800\ wgEncodeCshlShortRnaSeqSknshCytosolShorttotalMinusRep3 SKSH cyto - 1 bigWig 1.000000 17039768.000000 SK-N-SH cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 260 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH cyto - 1\ subGroups view=MinusSignal cellType=t2SKNSH localization=CYTOSOL protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshCytosolShorttotalMinusRep3\ type bigWig 1.000000 17039768.000000\ wgEncodeUwHistoneGm12875H3k04me3StdPkRep1 GM75 H3K4M3 Pk 1 narrowPeak GM12875 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 261 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12875 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel GM75 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3GM12875 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12875H3k04me3StdPkRep1\ type narrowPeak\ encTfChipPkENCFF760AQQ H1-hESC JUND 1 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in H1-hESC from ENCODE 3 (ENCFF760AQQ) 1 261 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of JUND in H1-hESC from ENCODE 3 (ENCFF760AQQ)\ parent encTfChipPk off\ shortLabel H1-hESC JUND 1\ subGroups cellType=H1-hESC factor=JUND\ track encTfChipPkENCFF760AQQ\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_ctss_fwd H9MelanocyticInduction_Day41Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_forward 0 261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep1%20%28H9EB-1%20d41%29.CNhs12905.12640-134G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12640-134G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_tpm_fwd H9MelanocyticInduction_Day41Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_forward 1 261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep1%20%28H9EB-1%20d41%29.CNhs12905.12640-134G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12640-134G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcmRawRep1 HCM Sg 1 bigWig 1.000000 45088.000000 HCM DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 261 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCM DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HCM Sg 1\ subGroups view=zRSig cellType=t3HCM rep=rep1 treatment=None\ track wgEncodeUwDnaseHcmRawRep1\ type bigWig 1.000000 45088.000000\ wgEncodeCshlLongRnaSeqHepg2CellPapAlnRep1 HeG2 cel pA+ A 1 bam HepG2 whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 261 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeG2 cel pA+ A 1\ subGroups view=Alignments cellType=t2HEPG2 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2CellPapAlnRep1\ type bam\ wgEncodeBroadHistoneHepg2H3k09me3Sig HepG2 H3K9m3 bigWig 0.040000 316824.562500 HepG2 H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 261 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HepG2 H3K9m3\ subGroups view=Signal factor=H3K09ME3 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k09me3Sig\ type bigWig 0.040000 316824.562500\ wgEncodeHaibTfbsH1hescP300V0416102PkRep2 hESC p300 V102 2 broadPeak H1-hESC p300 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 261 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC p300 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC p300 V102 2\ subGroups view=Peaks factor=P300 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescP300V0416102PkRep2\ type broadPeak\ wgEncodeUwTfbsHmecCtcfStdHotspotsRep1 HMEC CTCF Ht 1 broadPeak HMEC CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 261 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HMEC CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HMEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHmecCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeSydhTfbsK562Nfe2StdPk K562 NFE2 Std narrowPeak K562 NF-E2 Standard ChIP-seq Peaks from ENCODE/SYDH 3 261 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 NF-E2 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 NFE2 Std\ subGroups view=Peaks factor=NFE2 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Nfe2StdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Sirt6UniPk K562 SIRT6 narrowPeak K562 TFBS Uniform Peaks of SIRT6 from ENCODE/Harvard/Analysis 1 261 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of SIRT6 from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 SIRT6\ subGroups tier=a10 cellType=a10K562 factor=SIRT6 lab=Harvard\ track wgEncodeAwgTfbsSydhK562Sirt6UniPk\ wgEncodeRikenCageMcf7CellPapAlnRep1 MCF7 cell pA+ A 1 bam MCF-7 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 261 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel MCF7 cell pA+ A 1\ subGroups view=Alignments cellType=t2MCF7 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageMcf7CellPapAlnRep1\ type bam\ wgEncodeOpenChromDnasePhteBaseOverlapSignal pHTE OS bigWig 0.000000 317.000000 pHTE DNaseI HS Overlap Signal from ENCODE/Duke 2 261 0 0 0 127 127 127 1 0 0 regulation 0 longLabel pHTE DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel pHTE OS\ subGroups view=SIGBO cellType=t3PHTE treatment=zNONE\ track wgEncodeOpenChromDnasePhteBaseOverlapSignal\ type bigWig 0.000000 317.000000\ wgEncodeCshlShortRnaSeqSknshCytosolShorttotalMinusRep4 SKSH cyto - 2 bigWig 1.000000 20057648.000000 SK-N-SH cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 261 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH cyto - 2\ subGroups view=MinusSignal cellType=t2SKNSH localization=CYTOSOL protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshCytosolShorttotalMinusRep4\ type bigWig 1.000000 20057648.000000\ wgEncodeUwHistoneGm12875H3k04me3StdRawRep1 GM75 H3K4M3 Sg 1 bigWig 1.000000 3269.000000 GM12875 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 262 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12875 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel GM75 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3GM12875 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12875H3k04me3StdRawRep1\ type bigWig 1.000000 3269.000000\ encTfChipPkENCFF073PCP H1-hESC JUND 2 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in H1-hESC from ENCODE 3 (ENCFF073PCP) 1 262 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of JUND in H1-hESC from ENCODE 3 (ENCFF073PCP)\ parent encTfChipPk off\ shortLabel H1-hESC JUND 2\ subGroups cellType=H1-hESC factor=JUND\ track encTfChipPkENCFF073PCP\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_ctss_rev H9MelanocyticInduction_Day41Br1- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_reverse 0 262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep1%20%28H9EB-1%20d41%29.CNhs12905.12640-134G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12640-134G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_tpm_rev H9MelanocyticInduction_Day41Br1- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_reverse 1 262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep1%20%28H9EB-1%20d41%29.CNhs12905.12640-134G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12640-134G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcmHotspotsRep2 HCM Ht 2 broadPeak HCM DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 262 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HCM Ht 2\ subGroups view=Hot cellType=t3HCM rep=rep2 treatment=None\ track wgEncodeUwDnaseHcmHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHepg2CellPapAlnRep2 HeG2 cel pA+ A 2 bam HepG2 whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 262 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeG2 cel pA+ A 2\ subGroups view=Alignments cellType=t2HEPG2 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2CellPapAlnRep2\ type bam\ wgEncodeBroadHistoneHepg2H3k27acStdPk HepG2 H3K27ac broadPeak HepG2 H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 262 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HepG2 H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k27acStdPk\ type broadPeak\ wgEncodeHaibTfbsH1hescP300V0416102RawRep2 hESC p300 V102 2 bigWig 0.204650 217.440002 H1-hESC p300 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 262 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC p300 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC p300 V102 2\ subGroups view=RawSignal factor=P300 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescP300V0416102RawRep2\ type bigWig 0.204650 217.440002\ wgEncodeUwTfbsHmecCtcfStdPkRep1 HMEC CTCF Pk 1 narrowPeak HMEC CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 262 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HMEC CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HMEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHmecCtcfStdPkRep1\ type narrowPeak\ wgEncodeSydhTfbsK562Nfe2StdSig K562 NFE2 Std bigWig 0.000000 43274.101562 K562 NF-E2 Standard ChIP-seq Signal from ENCODE/SYDH 2 262 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 NF-E2 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 NFE2 Std\ subGroups view=Signal factor=NFE2 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Nfe2StdSig\ type bigWig 0.000000 43274.101562\ wgEncodeAwgTfbsHaibK562Six5Pcr1xUniPk K562 SIX5 narrowPeak K562 TFBS Uniform Peaks of SIX5 from ENCODE/HudsonAlpha/Analysis 1 262 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of SIX5 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 SIX5\ subGroups tier=a10 cellType=a10K562 factor=SIX5 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Six5Pcr1xUniPk\ wgEncodeRikenCageMcf7CellPapAlnRep2 MCF7 cell pA+ A 2 bam MCF-7 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 262 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel MCF7 cell pA+ A 2\ subGroups view=Alignments cellType=t2MCF7 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageMcf7CellPapAlnRep2\ type bam\ wgEncodeOpenChromDnaseProgfibPk ProgFib Pk narrowPeak ProgFib DNaseI HS Peaks from ENCODE/Duke 3 262 0 0 0 127 127 127 1 0 0 regulation 1 longLabel ProgFib DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel ProgFib Pk\ subGroups view=Peaks cellType=t3PROGFIB treatment=zNONE\ track wgEncodeOpenChromDnaseProgfibPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqSknshCytosolShorttotalPlusRep3 SKSH cyto + 1 bigWig 1.000000 7257308.000000 SK-N-SH cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 262 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH cyto + 1\ subGroups view=PlusSignal cellType=t2SKNSH localization=CYTOSOL protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshCytosolShorttotalPlusRep3\ type bigWig 1.000000 7257308.000000\ wgEncodeRikenCageMonocd14CellPapTssHmm CD14 cell pA+ bed 6 Monocytes-CD14+ whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 263 0 0 0 127 127 127 0 0 0 expression 1 longLabel Monocytes-CD14+ whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel CD14 cell pA+\ subGroups view=TssHmm cellType=t2MONOCYTESCD14 localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageMonocd14CellPapTssHmm\ type bed 6\ wgEncodeUwHistoneGm12875InputStdRawRep1 GM75 In Sg 1 bigWig 1.000000 7544.000000 GM12875 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 263 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12875 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel GM75 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3GM12875 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneGm12875InputStdRawRep1\ type bigWig 1.000000 7544.000000\ encTfChipPkENCFF768BPC H1-hESC KDM1A narrowPeak Transcription Factor ChIP-seq Peaks of KDM1A in H1-hESC from ENCODE 3 (ENCFF768BPC) 1 263 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of KDM1A in H1-hESC from ENCODE 3 (ENCFF768BPC)\ parent encTfChipPk off\ shortLabel H1-hESC KDM1A\ subGroups cellType=H1-hESC factor=KDM1A\ track encTfChipPkENCFF768BPC\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_ctss_fwd H9MelanocyticInduction_Day41Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_forward 0 263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep2%20%28H9EB-2%20d41%29.CNhs12907.12738-135I2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12738-135I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_tpm_fwd H9MelanocyticInduction_Day41Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_forward 1 263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep2%20%28H9EB-2%20d41%29.CNhs12907.12738-135I2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12738-135I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcmPkRep2 HCM Pk 2 narrowPeak HCM DNaseI HS Peaks Rep 2 from ENCODE/UW 1 263 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HCM Pk 2\ subGroups view=Peaks cellType=t3HCM rep=rep2 treatment=None\ track wgEncodeUwDnaseHcmPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHepg2CellPapContigs HeG2 cel pA+ C bed 6 + HepG2 whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 263 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HeG2 cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HEPG2 localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqHepg2CellPapContigs\ type bed 6 +\ wgEncodeBroadHistoneHepg2H3k27acStdSig HepG2 H3K27ac bigWig 0.040000 1918.119995 HepG2 H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 263 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HepG2 H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k27acStdSig\ type bigWig 0.040000 1918.119995\ wgEncodeHaibTfbsH1hescPol2V0416102PkRep1 hESC Pol2 V102 1 broadPeak H1-hESC Pol2 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 263 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Pol2 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC Pol2 V102 1\ subGroups view=Peaks factor=POL2 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescPol2V0416102PkRep1\ type broadPeak\ wgEncodeUwTfbsHmecCtcfStdRawRep1 HMEC CTCF Sg 1 bigWig 1.000000 4919.000000 HMEC CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 263 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMEC CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HMEC CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HMEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHmecCtcfStdRawRep1\ type bigWig 1.000000 4919.000000\ wgEncodeSydhTfbsK562NfyaStdPk K562 NYA Std narrowPeak K562 NF-YA Standard ChIP-seq Peaks from ENCODE/SYDH 3 263 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 NF-YA Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 NYA Std\ subGroups view=Peaks factor=NFYA cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562NfyaStdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Brg1IggmusUniPk K562 SMARCA4 narrowPeak K562 TFBS Uniform Peaks of Brg1 from ENCODE/Stanford/Analysis 1 263 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Brg1 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 SMARCA4\ subGroups tier=a10 cellType=a10K562 factor=SMARCA4 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Brg1IggmusUniPk\ wgEncodeOpenChromDnaseProgfibSig ProgFib DS bigWig 0.000000 1.924100 ProgFib DNaseI HS Density Signal from ENCODE/Duke 2 263 0 0 0 127 127 127 1 0 0 regulation 0 longLabel ProgFib DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel ProgFib DS\ subGroups view=SIG cellType=t3PROGFIB treatment=zNONE\ track wgEncodeOpenChromDnaseProgfibSig\ type bigWig 0.000000 1.924100\ wgEncodeCshlShortRnaSeqSknshCytosolShorttotalPlusRep4 SKSH cyto + 2 bigWig 1.000000 7278151.000000 SK-N-SH cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 263 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH cyto + 2\ subGroups view=PlusSignal cellType=t2SKNSH localization=CYTOSOL protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshCytosolShorttotalPlusRep4\ type bigWig 1.000000 7278151.000000\ wgEncodeRikenCageMonocd14CellPapPlusRawRep1 CD14 cell pA+ + 1 bigWig 1.000000 820733.000000 Monocytes-CD14+ whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 264 0 0 0 127 127 127 0 0 0 expression 0 longLabel Monocytes-CD14+ whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel CD14 cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t2MONOCYTESCD14 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageMonocd14CellPapPlusRawRep1\ type bigWig 1.000000 820733.000000\ encTfChipPkENCFF838KYH H1-hESC KDM4A narrowPeak Transcription Factor ChIP-seq Peaks of KDM4A in H1-hESC from ENCODE 3 (ENCFF838KYH) 1 264 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of KDM4A in H1-hESC from ENCODE 3 (ENCFF838KYH)\ parent encTfChipPk off\ shortLabel H1-hESC KDM4A\ subGroups cellType=H1-hESC factor=KDM4A\ track encTfChipPkENCFF838KYH\ wgEncodeUwHistoneH7esH3k04me3StdDiffa2dHotspotsRep1 H7ES H3K4M3 Ht 1 broadPeak H7-hESC H3K4me3 diffProtA 2 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 264 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 diffProtA 2 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep1\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa2dHotspotsRep1\ type broadPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_ctss_rev H9MelanocyticInduction_Day41Br2- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_reverse 0 264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep2%20%28H9EB-2%20d41%29.CNhs12907.12738-135I2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12738-135I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_tpm_rev H9MelanocyticInduction_Day41Br2- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_reverse 1 264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep2%20%28H9EB-2%20d41%29.CNhs12907.12738-135I2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12738-135I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHcmRawRep2 HCM Sg 2 bigWig 1.000000 22002.000000 HCM DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 264 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCM DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HCM Sg 2\ subGroups view=zRSig cellType=t3HCM rep=rep2 treatment=None\ track wgEncodeUwDnaseHcmRawRep2\ type bigWig 1.000000 22002.000000\ wgEncodeCshlLongRnaSeqHepg2CellPapJunctions HeG2 cel pA+ J bed 6 + HepG2 whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 264 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HeG2 cel pA+ J\ subGroups view=Junctions cellType=t2HEPG2 localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHepg2CellPapJunctions\ type bed 6 +\ wgEncodeBroadHistoneHepg2H3k27me3StdPk HepG2 H3K27m3 broadPeak HepG2 H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 264 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HepG2 H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k27me3StdPk\ type broadPeak\ wgEncodeHaibTfbsH1hescPol2V0416102RawRep1 hESC Pol2 V102 1 bigWig 0.145301 113.225998 H1-hESC Pol2 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 264 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Pol2 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC Pol2 V102 1\ subGroups view=RawSignal factor=POL2 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescPol2V0416102RawRep1\ type bigWig 0.145301 113.225998\ wgEncodeUwTfbsHmecCtcfStdHotspotsRep2 HMEC CTCF Ht 2 broadPeak HMEC CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 264 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel HMEC CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3HMEC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHmecCtcfStdHotspotsRep2\ type broadPeak\ wgEncodeSydhTfbsK562NfyaStdSig K562 NYA Std bigWig 1.000000 3069.000000 K562 NF-YA Standard ChIP-seq Signal from ENCODE/SYDH 2 264 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 NF-YA Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 NYA Std\ subGroups view=Signal factor=NFYA cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562NfyaStdSig\ type bigWig 1.000000 3069.000000\ wgEncodeAwgTfbsSydhK562Ini1IggmusUniPk K562 SMARCB1 narrowPeak K562 TFBS Uniform Peaks of Ini1 from ENCODE/Stanford/Analysis 1 264 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Ini1 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 SMARCB1\ subGroups tier=a10 cellType=a10K562 factor=SMARCB1 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Ini1IggmusUniPk\ wgEncodeOpenChromDnaseProgfibBaseOverlapSignal ProgFib OS bigWig 0.000000 231.000000 ProgFib DNaseI HS Overlap Signal from ENCODE/Duke 2 264 0 0 0 127 127 127 1 0 0 regulation 0 longLabel ProgFib DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel ProgFib OS\ subGroups view=SIGBO cellType=t3PROGFIB treatment=zNONE\ track wgEncodeOpenChromDnaseProgfibBaseOverlapSignal\ type bigWig 0.000000 231.000000\ wgEncodeCshlShortRnaSeqSknshCytosolTapContigs SKSH cyto TAP C bed 6 SK-N-SH TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL 2 264 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel SKSH cyto TAP C\ subGroups view=Contigs rep=Pooled cellType=t2SKNSH localization=CYTOSOL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqSknshCytosolTapContigs\ type bed 6\ wgEncodeRikenCageMonocd14CellPapPlusRawRep2 CD14 cell pA+ + 2 bigWig 1.000000 1237250.000000 Monocytes-CD14+ whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 265 0 0 0 127 127 127 0 0 0 expression 0 longLabel Monocytes-CD14+ whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel CD14 cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t2MONOCYTESCD14 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageMonocd14CellPapPlusRawRep2\ type bigWig 1.000000 1237250.000000\ encTfChipPkENCFF583YFS H1-hESC KDM5A narrowPeak Transcription Factor ChIP-seq Peaks of KDM5A in H1-hESC from ENCODE 3 (ENCFF583YFS) 1 265 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of KDM5A in H1-hESC from ENCODE 3 (ENCFF583YFS)\ parent encTfChipPk off\ shortLabel H1-hESC KDM5A\ subGroups cellType=H1-hESC factor=KDM5A\ track encTfChipPkENCFF583YFS\ wgEncodeUwHistoneH7esH3k04me3StdDiffa2dPkRep1 H7ES H3K4M3 Pk 1 narrowPeak H7-hESC H3K4me3 diffProtA 2 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 265 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 diffProtA 2 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep1\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa2dPkRep1\ type narrowPeak\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_ctss_fwd H9MelanocyticInduction_Day41Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_forward 0 265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep3%20%28H9EB-3%20d41%29.CNhs12950.12836-137B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12836-137B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_tpm_fwd H9MelanocyticInduction_Day41Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_forward 1 265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep3%20%28H9EB-3%20d41%29.CNhs12950.12836-137B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12836-137B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHconfHotspotsRep1 HConF Ht 1 broadPeak HConF DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 265 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HConF DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HConF Ht 1\ subGroups view=Hot cellType=t3HCONF rep=rep1 treatment=None\ track wgEncodeUwDnaseHconfHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHepg2CellPapMinusRawSigRep1 HeG2 cel pA+ - 1 bigWig 1.000000 318524.000000 HepG2 whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 265 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeG2 cel pA+ - 1\ subGroups view=MinusSignal cellType=t2HEPG2 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2CellPapMinusRawSigRep1\ type bigWig 1.000000 318524.000000\ wgEncodeBroadHistoneHepg2H3k27me3StdSig HepG2 H3K27m3 bigWig 0.040000 12507.360352 HepG2 H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 265 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HepG2 H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k27me3StdSig\ type bigWig 0.040000 12507.360352\ wgEncodeHaibTfbsH1hescPol2V0416102PkRep2 hESC Pol2 V102 2 broadPeak H1-hESC Pol2 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 265 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Pol2 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC Pol2 V102 2\ subGroups view=Peaks factor=POL2 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescPol2V0416102PkRep2\ type broadPeak\ wgEncodeUwTfbsHmecCtcfStdPkRep2 HMEC CTCF Pk 2 narrowPeak HMEC CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 265 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HMEC CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3HMEC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHmecCtcfStdPkRep2\ type narrowPeak\ wgEncodeSydhTfbsK562NfybStdPk K562 NYB Std narrowPeak K562 NF-YB Standard ChIP-seq Peaks from ENCODE/SYDH 3 265 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 NF-YB Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 NYB Std\ subGroups view=Peaks factor=NFYB cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562NfybStdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Smc3ab9263IggrabUniPk K562 SMC3 narrowPeak K562 TFBS Uniform Peaks of SMC3_(ab9263) from ENCODE/Stanford/Analysis 1 265 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of SMC3_(ab9263) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 SMC3\ subGroups tier=a10 cellType=a10K562 factor=SMC3 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Smc3ab9263IggrabUniPk\ wgEncodeOpenChromDnasePsoasmuscleocPk Psoas muscle Pk narrowPeak Psoas muscle OC DNaseI HS Peaks from ENCODE/Duke 3 265 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Psoas muscle OC DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Psoas muscle Pk\ subGroups view=Peaks cellType=t3PSOASMUSCLEOC treatment=zNONE\ track wgEncodeOpenChromDnasePsoasmuscleocPk\ type narrowPeak\ wgEncodeCshlShortRnaSeqSknshCytosolShorttotalTapMinusRep3 SKSH cyto TAP - 1 bigWig 1.000000 22061716.000000 SK-N-SH TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 265 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH cyto TAP - 1\ subGroups view=MinusSignal cellType=t2SKNSH localization=CYTOSOL protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshCytosolShorttotalTapMinusRep3\ type bigWig 1.000000 22061716.000000\ wgEncodeRikenCageMonocd14CellPapMinusRawRep1 CD14 cell pA+ - 1 bigWig 1.000000 886978.000000 Monocytes-CD14+ whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 266 0 0 0 127 127 127 0 0 0 expression 0 longLabel Monocytes-CD14+ whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel CD14 cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t2MONOCYTESCD14 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageMonocd14CellPapMinusRawRep1\ type bigWig 1.000000 886978.000000\ encTfChipPkENCFF646GCM H1-hESC MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in H1-hESC from ENCODE 3 (ENCFF646GCM) 1 266 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in H1-hESC from ENCODE 3 (ENCFF646GCM)\ parent encTfChipPk off\ shortLabel H1-hESC MAFK\ subGroups cellType=H1-hESC factor=MAFK\ track encTfChipPkENCFF646GCM\ wgEncodeUwHistoneH7esH3k04me3StdDiffa2dRawRep1 H7ES H3K4M3 Sg 1 bigWig 1.000000 5096.000000 H7-hESC H3K4me3 diffProtA 2 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 266 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K4me3 diffProtA 2 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep1\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa2dRawRep1\ type bigWig 1.000000 5096.000000\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_ctss_rev H9MelanocyticInduction_Day41Br3- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_reverse 0 266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep3%20%28H9EB-3%20d41%29.CNhs12950.12836-137B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12836-137B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_tpm_rev H9MelanocyticInduction_Day41Br3- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_reverse 1 266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep3%20%28H9EB-3%20d41%29.CNhs12950.12836-137B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12836-137B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseHconfPkRep1 HConF Pk 1 narrowPeak HConF DNaseI HS Peaks Rep 1 from ENCODE/UW 1 266 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HConF DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HConF Pk 1\ subGroups view=Peaks cellType=t3HCONF rep=rep1 treatment=None\ track wgEncodeUwDnaseHconfPkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHepg2CellPapMinusRawSigRep2 HeG2 cel pA+ - 2 bigWig 1.000000 336035.000000 HepG2 whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 266 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeG2 cel pA+ - 2\ subGroups view=MinusSignal cellType=t2HEPG2 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2CellPapMinusRawSigRep2\ type bigWig 1.000000 336035.000000\ wgEncodeBroadHistoneHepg2H3k36me3StdPk HepG2 H3K36m3 broadPeak HepG2 H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 266 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HepG2 H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k36me3StdPk\ type broadPeak\ wgEncodeHaibTfbsH1hescPol2V0416102RawRep2 hESC Pol2 V102 2 bigWig 0.147064 292.363007 H1-hESC Pol2 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 266 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Pol2 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC Pol2 V102 2\ subGroups view=RawSignal factor=POL2 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescPol2V0416102RawRep2\ type bigWig 0.147064 292.363007\ wgEncodeUwTfbsHmecCtcfStdRawRep2 HMEC CTCF Sg 2 bigWig 1.000000 6406.000000 HMEC CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 266 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMEC CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HMEC CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3HMEC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHmecCtcfStdRawRep2\ type bigWig 1.000000 6406.000000\ wgEncodeSydhTfbsK562NfybStdSig K562 NYB Std bigWig 1.000000 8756.000000 K562 NF-YB Standard ChIP-seq Signal from ENCODE/SYDH 2 266 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 NF-YB Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 NYB Std\ subGroups view=Signal factor=NFYB cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562NfybStdSig\ type bigWig 1.000000 8756.000000\ wgEncodeAwgTfbsHaibK562Sp1Pcr1xUniPk K562 SP1 narrowPeak K562 TFBS Uniform Peaks of SP1 from ENCODE/HudsonAlpha/Analysis 1 266 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of SP1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 SP1\ subGroups tier=a10 cellType=a10K562 factor=SP1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Sp1Pcr1xUniPk\ wgEncodeOpenChromDnasePsoasmuscleocSig Psoas muscle DS bigWig 0.000000 1.953700 Psoas muscle OC DNaseI HS Density Signal from ENCODE/Duke 2 266 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Psoas muscle OC DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Psoas muscle DS\ subGroups view=SIG cellType=t3PSOASMUSCLEOC treatment=zNONE\ track wgEncodeOpenChromDnasePsoasmuscleocSig\ type bigWig 0.000000 1.953700\ wgEncodeCshlShortRnaSeqSknshCytosolShorttotalTapMinusRep4 SKSH cyto TAP - 2 bigWig 1.000000 25982922.000000 SK-N-SH TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 266 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH cyto TAP - 2\ subGroups view=MinusSignal cellType=t2SKNSH localization=CYTOSOL protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshCytosolShorttotalTapMinusRep4\ type bigWig 1.000000 25982922.000000\ wgEncodeRikenCageMonocd14CellPapMinusRawRep2 CD14 cell pA+ - 2 bigWig 1.000000 980048.000000 Monocytes-CD14+ whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 267 0 0 0 127 127 127 0 0 0 expression 0 longLabel Monocytes-CD14+ whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel CD14 cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t2MONOCYTESCD14 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageMonocd14CellPapMinusRawRep2\ type bigWig 1.000000 980048.000000\ encTfChipPkENCFF569IGP H1-hESC MYC narrowPeak Transcription Factor ChIP-seq Peaks of MYC in H1-hESC from ENCODE 3 (ENCFF569IGP) 1 267 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of MYC in H1-hESC from ENCODE 3 (ENCFF569IGP)\ parent encTfChipPk off\ shortLabel H1-hESC MYC\ subGroups cellType=H1-hESC factor=MYC\ track encTfChipPkENCFF569IGP\ wgEncodeUwHistoneH7esH3k04me3StdDiffa2dHotspotsRep2 H7ES H3K4M3 Ht 2 broadPeak H7-hESC H3K4me3 diffProtA 2 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 267 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 diffProtA 2 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep2\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa2dHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseHconfRawRep1 HConF Sg 1 bigWig 1.000000 23078.000000 HConF DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 267 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HConF DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HConF Sg 1\ subGroups view=zRSig cellType=t3HCONF rep=rep1 treatment=None\ track wgEncodeUwDnaseHconfRawRep1\ type bigWig 1.000000 23078.000000\ wgEncodeCshlLongRnaSeqHepg2CellPapPlusRawSigRep1 HeG2 cel pA+ + 1 bigWig 1.000000 1008445.000000 HepG2 whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 267 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeG2 cel pA+ + 1\ subGroups view=PlusSignal cellType=t2HEPG2 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2CellPapPlusRawSigRep1\ type bigWig 1.000000 1008445.000000\ wgEncodeBroadHistoneHepg2H3k36me3StdSig HepG2 H3K36m3 bigWig 0.040000 5547.879883 HepG2 H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 267 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HepG2 H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k36me3StdSig\ type bigWig 0.040000 5547.879883\ wgEncodeHaibTfbsH1hescPol24h8V0416102PkRep1 hESC Pol2-4H8 V102 1 broadPeak H1-hESC Pol2-4H8 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 267 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Pol2-4H8 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel hESC Pol2-4H8 V102 1\ subGroups view=Peaks factor=POL24H8 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescPol24h8V0416102PkRep1\ type broadPeak\ wgEncodeUwTfbsHmecInputStdRawRep1 HMEC In Sg 1 bigWig 1.000000 9968.000000 HMEC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 267 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMEC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HMEC In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HMEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHmecInputStdRawRep1\ type bigWig 1.000000 9968.000000\ wgEncodeSydhTfbsK562Nrf1IggrabPk K562 Nrf1 IgR narrowPeak K562 Nrf1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 267 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Nrf1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 Nrf1 IgR\ subGroups view=Peaks factor=NRF1 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Nrf1IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsHaibK562Sp2sc643V0416102UniPk K562 SP2 narrowPeak K562 TFBS Uniform Peaks of SP2_(SC-643) from ENCODE/HudsonAlpha/Analysis 1 267 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of SP2_(SC-643) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 SP2\ subGroups tier=a10 cellType=a10K562 factor=SP2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Sp2sc643V0416102UniPk\ wgEncodeOpenChromDnasePsoasmuscleocBaseOverlapSignal Psoas muscle OS bigWig 0.000000 231.000000 Psoas muscle OC DNaseI HS Overlap Signal from ENCODE/Duke 2 267 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Psoas muscle OC DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Psoas muscle OS\ subGroups view=SIGBO cellType=t3PSOASMUSCLEOC treatment=zNONE\ track wgEncodeOpenChromDnasePsoasmuscleocBaseOverlapSignal\ type bigWig 0.000000 231.000000\ wgEncodeCshlShortRnaSeqSknshCytosolShorttotalTapPlusRep3 SKSH cyto TAP + 1 bigWig 1.000000 6061962.000000 SK-N-SH TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 267 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH cyto TAP + 1\ subGroups view=PlusSignal cellType=t2SKNSH localization=CYTOSOL protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshCytosolShorttotalTapPlusRep3\ type bigWig 1.000000 6061962.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_ctss_fwd Tc:ARPE-19Emt_00hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_forward 0 267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep1.CNhs14463.13625-146H7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13625-146H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_tpm_fwd Tc:ARPE-19Emt_00hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_forward 1 267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep1.CNhs14463.13625-146H7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13625-146H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageMonocd14CellPapAlnRep1 CD14 cell pA+ A 1 bam Monocytes-CD14+ whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 268 0 0 0 127 127 127 0 0 0 expression 1 longLabel Monocytes-CD14+ whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel CD14 cell pA+ A 1\ subGroups view=Alignments cellType=t2MONOCYTESCD14 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageMonocd14CellPapAlnRep1\ type bam\ encTfChipPkENCFF379EPK H1-hESC NANOG narrowPeak Transcription Factor ChIP-seq Peaks of NANOG in H1-hESC from ENCODE 3 (ENCFF379EPK) 1 268 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of NANOG in H1-hESC from ENCODE 3 (ENCFF379EPK)\ parent encTfChipPk off\ shortLabel H1-hESC NANOG\ subGroups cellType=H1-hESC factor=NANOG\ track encTfChipPkENCFF379EPK\ wgEncodeUwHistoneH7esH3k04me3StdDiffa2dPkRep2 H7ES H3K4M3 Pk 2 narrowPeak H7-hESC H3K4me3 diffProtA 2 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 268 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 diffProtA 2 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep2\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa2dPkRep2\ type narrowPeak\ wgEncodeUwDnaseHconfHotspotsRep2 HConF Ht 2 broadPeak HConF DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 268 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HConF DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HConF Ht 2\ subGroups view=Hot cellType=t3HCONF rep=rep2 treatment=None\ track wgEncodeUwDnaseHconfHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHepg2CellPapPlusRawSigRep2 HeG2 cel pA+ + 2 bigWig 1.000000 892437.000000 HepG2 whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 268 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeG2 cel pA+ + 2\ subGroups view=PlusSignal cellType=t2HEPG2 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2CellPapPlusRawSigRep2\ type bigWig 1.000000 892437.000000\ wgEncodeBroadHistoneHepg2H3k79me2StdPk HepG2 H3K79m2 broadPeak HepG2 H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 268 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HepG2 H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k79me2StdPk\ type broadPeak\ wgEncodeHaibTfbsH1hescPol24h8V0416102RawRep1 hESC Pol2-4H8 V102 1 bigWig 0.167542 258.097992 H1-hESC Pol2-4H8 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 268 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Pol2-4H8 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel hESC Pol2-4H8 V102 1\ subGroups view=RawSignal factor=POL24H8 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescPol24h8V0416102RawRep1\ type bigWig 0.167542 258.097992\ wgEncodeUwTfbsHmfCtcfStdHotspotsRep1 HMF CTCF Ht 1 broadPeak HMF CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 268 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMF CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HMF CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HMF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHmfCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeSydhTfbsK562Nrf1IggrabSig K562 Nrf1 IgR bigWig 0.000000 8573.400391 K562 Nrf1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 268 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Nrf1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 Nrf1 IgR\ subGroups view=Signal factor=NRF1 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Nrf1IggrabSig\ type bigWig 0.000000 8573.400391\ wgEncodeAwgTfbsHaibK562Pu1Pcr1xUniPk K562 SPI1 narrowPeak K562 TFBS Uniform Peaks of PU.1 from ENCODE/HudsonAlpha/Analysis 1 268 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of PU.1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 SPI1\ subGroups tier=a10 cellType=a10K562 factor=SPI1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Pu1Pcr1xUniPk\ wgEncodeOpenChromDnaseRwpe1Pk RWPE1 Pk narrowPeak RWPE1 DNaseI HS Peaks from ENCODE/Duke 3 268 0 0 0 127 127 127 1 0 0 regulation 1 longLabel RWPE1 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel RWPE1 Pk\ subGroups view=Peaks cellType=t3RWPE1 treatment=zNONE\ track wgEncodeOpenChromDnaseRwpe1Pk\ type narrowPeak\ wgEncodeCshlShortRnaSeqSknshCytosolShorttotalTapPlusRep4 SKSH cyto TAP + 2 bigWig 1.000000 6139576.000000 SK-N-SH TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 268 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH cyto TAP + 2\ subGroups view=PlusSignal cellType=t2SKNSH localization=CYTOSOL protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshCytosolShorttotalTapPlusRep4\ type bigWig 1.000000 6139576.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_ctss_rev Tc:ARPE-19Emt_00hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_reverse 0 268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep1.CNhs14463.13625-146H7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13625-146H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_tpm_rev Tc:ARPE-19Emt_00hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_reverse 1 268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep1.CNhs14463.13625-146H7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13625-146H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageMonocd14CellPapAlnRep2 CD14 cell pA+ A 2 bam Monocytes-CD14+ whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 269 0 0 0 127 127 127 0 0 0 expression 1 longLabel Monocytes-CD14+ whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel CD14 cell pA+ A 2\ subGroups view=Alignments cellType=t2MONOCYTESCD14 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageMonocd14CellPapAlnRep2\ type bam\ encTfChipPkENCFF508IBP H1-hESC NRF1 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in H1-hESC from ENCODE 3 (ENCFF508IBP) 1 269 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in H1-hESC from ENCODE 3 (ENCFF508IBP)\ parent encTfChipPk off\ shortLabel H1-hESC NRF1\ subGroups cellType=H1-hESC factor=NRF1\ track encTfChipPkENCFF508IBP\ wgEncodeUwHistoneH7esH3k04me3StdDiffa2dRawRep2 H7ES H3K4M3 Sg 2 bigWig 1.000000 5447.000000 H7-hESC H3K4me3 diffProtA 2 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 269 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K4me3 diffProtA 2 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep2\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa2dRawRep2\ type bigWig 1.000000 5447.000000\ wgEncodeUwDnaseHconfPkRep2 HConF Pk 2 narrowPeak HConF DNaseI HS Peaks Rep 2 from ENCODE/UW 1 269 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HConF DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HConF Pk 2\ subGroups view=Peaks cellType=t3HCONF rep=rep2 treatment=None\ track wgEncodeUwDnaseHconfPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHepg2CytosolLongnonpolyaAlnRep1 HeG2 cyt pA- A 1 bam HepG2 cytosol polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 269 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 cytosol polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeG2 cyt pA- A 1\ subGroups view=Alignments cellType=t2HEPG2 localization=CYTOSOL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2CytosolLongnonpolyaAlnRep1\ type bam\ wgEncodeBroadHistoneHepg2H3k79me2StdSig HepG2 H3K79m2 bigWig 0.040000 14792.160156 HepG2 H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 269 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HepG2 H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H3k79me2StdSig\ type bigWig 0.040000 14792.160156\ wgEncodeHaibTfbsH1hescPol24h8V0416102PkRep2 hESC Pol2-4H8 V102 2 broadPeak H1-hESC Pol2-4H8 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 269 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Pol2-4H8 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel hESC Pol2-4H8 V102 2\ subGroups view=Peaks factor=POL24H8 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescPol24h8V0416102PkRep2\ type broadPeak\ wgEncodeUwTfbsHmfCtcfStdPkRep1 HMF CTCF Pk 1 narrowPeak HMF CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 269 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMF CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HMF CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HMF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHmfCtcfStdPkRep1\ type narrowPeak\ wgEncodeSydhTfbsK562P300IggrabPk K562 p300 IgR narrowPeak K562 p300 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 269 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 p300 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 p300 IgR\ subGroups view=Peaks factor=P300 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562P300IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsHaibK562SrfV0416101UniPk K562 SRF narrowPeak K562 TFBS Uniform Peaks of SRF from ENCODE/HudsonAlpha/Analysis 1 269 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of SRF from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 SRF\ subGroups tier=a10 cellType=a10K562 factor=SRF lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562SrfV0416101UniPk\ wgEncodeOpenChromDnaseRwpe1Sig RWPE1 DS bigWig 0.000000 1.112900 RWPE1 DNaseI HS Density Signal from ENCODE/Duke 2 269 0 0 0 127 127 127 1 0 0 regulation 0 longLabel RWPE1 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel RWPE1 DS\ subGroups view=SIG cellType=t3RWPE1 treatment=zNONE\ track wgEncodeOpenChromDnaseRwpe1Sig\ type bigWig 0.000000 1.112900\ wgEncodeCshlShortRnaSeqSknshNucleusCiptapContigs SKSH nucl CIP C bed 6 SK-N-SH CIP-TAP nucleus small RNA-seq Contigs from ENCODE/CSHL 2 269 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH CIP-TAP nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel SKSH nucl CIP C\ subGroups view=Contigs rep=Pooled cellType=t2SKNSH localization=NUCLEUS protocol=CIPTAP rank=none\ track wgEncodeCshlShortRnaSeqSknshNucleusCiptapContigs\ type bed 6\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_ctss_fwd Tc:ARPE-19Emt_00hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_forward 0 269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep2.CNhs14464.13626-146H8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13626-146H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_tpm_fwd Tc:ARPE-19Emt_00hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_forward 1 269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep2.CNhs14464.13626-146H8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13626-146H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF687NII H1-hESC PHF8 narrowPeak Transcription Factor ChIP-seq Peaks of PHF8 in H1-hESC from ENCODE 3 (ENCFF687NII) 1 270 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of PHF8 in H1-hESC from ENCODE 3 (ENCFF687NII)\ parent encTfChipPk off\ shortLabel H1-hESC PHF8\ subGroups cellType=H1-hESC factor=PHF8\ track encTfChipPkENCFF687NII\ wgEncodeUwHistoneH7esH3k04me3StdDiffa5dHotspotsRep1 H7ES H3K4M3 Ht 1 broadPeak H7-hESC H3K4me3 diffProtA 5 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 270 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 diffProtA 5 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep1\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa5dHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseHconfRawRep2 HConF Sg 2 bigWig 1.000000 34915.000000 HConF DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 270 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HConF DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HConF Sg 2\ subGroups view=zRSig cellType=t3HCONF rep=rep2 treatment=None\ track wgEncodeUwDnaseHconfRawRep2\ type bigWig 1.000000 34915.000000\ wgEncodeCshlLongRnaSeqHepg2CytosolLongnonpolyaAlnRep2 HeG2 cyt pA- A 2 bam HepG2 cytosol polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 270 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 cytosol polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeG2 cyt pA- A 2\ subGroups view=Alignments cellType=t2HEPG2 localization=CYTOSOL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2CytosolLongnonpolyaAlnRep2\ type bam\ wgEncodeBroadHistoneHepg2H4k20me1StdPk HepG2 H4K20m1 broadPeak HepG2 H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 270 189 0 157 222 127 206 1 0 0 regulation 1 color 189,0,157\ longLabel HepG2 H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HepG2 H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H4k20me1StdPk\ type broadPeak\ wgEncodeHaibTfbsH1hescPol24h8V0416102RawRep2 hESC Pol2-4H8 V102 2 bigWig 0.135589 820.411987 H1-hESC Pol2-4H8 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 270 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Pol2-4H8 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel hESC Pol2-4H8 V102 2\ subGroups view=RawSignal factor=POL24H8 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescPol24h8V0416102RawRep2\ type bigWig 0.135589 820.411987\ wgEncodeUwTfbsHmfCtcfStdRawRep1 HMF CTCF Sg 1 bigWig 1.000000 3170.000000 HMF CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 270 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMF CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HMF CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HMF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHmfCtcfStdRawRep1\ type bigWig 1.000000 3170.000000\ wgEncodeSydhTfbsK562P300IggrabSig K562 p300 IgR bigWig 1.000000 24334.000000 K562 p300 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 270 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 p300 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 p300 IgR\ subGroups view=Signal factor=P300 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562P300IggrabSig\ type bigWig 1.000000 24334.000000\ wgEncodeAwgTfbsSydhK562Stat1Ifng30UniPk K562+IFNg30 STAT1 narrowPeak K562 (IFNg30) TFBS Uniform Peaks of STAT1 from ENCODE/Stanford/Analysis 1 270 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNg30) TFBS Uniform Peaks of STAT1 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNg30 STAT1\ subGroups tier=a10 cellType=a10K562 factor=STAT1 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Stat1Ifng30UniPk\ wgEncodeOpenChromDnaseRwpe1BaseOverlapSignal RWPE1 OS bigWig 0.000000 198.000000 RWPE1 DNaseI HS Overlap Signal from ENCODE/Duke 2 270 0 0 0 127 127 127 1 0 0 regulation 0 longLabel RWPE1 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel RWPE1 OS\ subGroups view=SIGBO cellType=t3RWPE1 treatment=zNONE\ track wgEncodeOpenChromDnaseRwpe1BaseOverlapSignal\ type bigWig 0.000000 198.000000\ wgEncodeRikenCageSknshCytosolPapTssHmm SKSH cyto pA+ bed 6 SK-N-SH cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 270 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel SKSH cyto pA+\ subGroups view=TssHmm cellType=t2SKNSH localization=cytosol rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageSknshCytosolPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqSknshNucleusShorttotalCiptapMinusRep3 SKSH nucl CIP - 1 bigWig 1.000000 27571684.000000 SK-N-SH CIP-TAP nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 270 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH CIP-TAP nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH nucl CIP - 1\ subGroups view=MinusSignal cellType=t2SKNSH localization=NUCLEUS protocol=CIPTAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshNucleusShorttotalCiptapMinusRep3\ type bigWig 1.000000 27571684.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_ctss_rev Tc:ARPE-19Emt_00hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_reverse 0 270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep2.CNhs14464.13626-146H8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13626-146H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_tpm_rev Tc:ARPE-19Emt_00hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_reverse 1 270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep2.CNhs14464.13626-146H8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13626-146H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF468LYO H1-hESC POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in H1-hESC from ENCODE 3 (ENCFF468LYO) 1 271 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in H1-hESC from ENCODE 3 (ENCFF468LYO)\ parent encTfChipPk off\ shortLabel H1-hESC POLR2A\ subGroups cellType=H1-hESC factor=POLR2A\ track encTfChipPkENCFF468LYO\ wgEncodeUwHistoneH7esH3k04me3StdDiffa5dPkRep1 H7ES H3K4M3 Pk 1 narrowPeak H7-hESC H3K4me3 diffProtA 5 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 271 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 diffProtA 5 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep1\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa5dPkRep1\ type narrowPeak\ wgEncodeUwDnaseHcpeHotspotsRep1 HCPEpiC Ht 1 broadPeak HCPEpiC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 271 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpiC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HCPEpiC Ht 1\ subGroups view=Hot cellType=t3HCPEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHcpeHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHepg2CytosolPamContigs HeG2 cyt pA- C bed 6 + HepG2 cytosol polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 271 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 cytosol polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HeG2 cyt pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HEPG2 localization=CYTOSOL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqHepg2CytosolPamContigs\ type bed 6 +\ wgEncodeBroadHistoneHepg2H4k20me1StdSig HepG2 H4K20m1 bigWig 0.040000 12546.959961 HepG2 H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 271 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HepG2 H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2H4k20me1StdSig\ type bigWig 0.040000 12546.959961\ wgEncodeHaibTfbsH1hescPou5f1sc9081V0416102PkRep1 hESC POU5F1 1 broadPeak H1-hESC POU5F1 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 271 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC POU5F1 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC POU5F1 1\ subGroups view=Peaks factor=POU5F1SC9081 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescPou5f1sc9081V0416102PkRep1\ type broadPeak\ wgEncodeUwTfbsHmfCtcfStdHotspotsRep2 HMF CTCF Ht 2 broadPeak HMF CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 271 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMF CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HMF CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3HMF rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHmfCtcfStdHotspotsRep2\ type broadPeak\ wgEncodeSydhTfbsK562P300sc584sc48343IggrabPk K562 p300 IgR narrowPeak K562 p300 SC48343 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 271 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 p300 SC48343 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 p300 IgR\ subGroups view=Peaks factor=P300SC48343 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562P300sc584sc48343IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Stat1Ifng6hUniPk K562+IFNg6h STAT1 narrowPeak K562 (IFNg6h) TFBS Uniform Peaks of STAT1 from ENCODE/Stanford/Analysis 1 271 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNg6h) TFBS Uniform Peaks of STAT1 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNg6h STAT1\ subGroups tier=a10 cellType=a10K562 factor=STAT1 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Stat1Ifng6hUniPk\ wgEncodeRikenCageSknshCytosolPapPlusRawRep3 SKSH cyto pA+ + 3 bigWig 1.000000 282291.000000 SK-N-SH cytosol polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN 2 271 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH cytosol polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel SKSH cyto pA+ + 3\ subGroups view=PlusRawSignal cellType=t2SKNSH localization=cytosol rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageSknshCytosolPapPlusRawRep3\ type bigWig 1.000000 282291.000000\ wgEncodeCshlShortRnaSeqSknshNucleusShorttotalCiptapMinusRep4 SKSH nucl CIP - 2 bigWig 1.000000 45034264.000000 SK-N-SH CIP-TAP nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 271 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH CIP-TAP nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH nucl CIP - 2\ subGroups view=MinusSignal cellType=t2SKNSH localization=NUCLEUS protocol=CIPTAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshNucleusShorttotalCiptapMinusRep4\ type bigWig 1.000000 45034264.000000\ wgEncodeOpenChromDnaseStellatePk Stellate Pk narrowPeak Stellate DNaseI HS Peaks from ENCODE/Duke 3 271 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Stellate DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Stellate Pk\ subGroups view=Peaks cellType=t3STELLATE treatment=zNONE\ track wgEncodeOpenChromDnaseStellatePk\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_ctss_fwd Tc:ARPE-19Emt_00hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_forward 0 271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep3.CNhs14465.13627-146H9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13627-146H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_tpm_fwd Tc:ARPE-19Emt_00hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_forward 1 271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep3.CNhs14465.13627-146H9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13627-146H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF732XGR H1-hESC RAD21 1 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in H1-hESC from ENCODE 3 (ENCFF732XGR) 1 272 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of RAD21 in H1-hESC from ENCODE 3 (ENCFF732XGR)\ parent encTfChipPk off\ shortLabel H1-hESC RAD21 1\ subGroups cellType=H1-hESC factor=RAD21\ track encTfChipPkENCFF732XGR\ wgEncodeUwHistoneH7esH3k04me3StdDiffa5dRawRep1 H7ES H3K4M3 Sg 1 bigWig 1.000000 1575.000000 H7-hESC H3K4me3 diffProtA 5 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 272 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K4me3 diffProtA 5 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep1\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa5dRawRep1\ type bigWig 1.000000 1575.000000\ wgEncodeUwDnaseHcpePkRep1 HCPEpiC Pk 1 narrowPeak HCPEpiC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 272 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpiC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HCPEpiC Pk 1\ subGroups view=Peaks cellType=t3HCPEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHcpePkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHepg2CytosolPamJunctions HeG2 cyt pA- J bed 6 + HepG2 cytosol polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 272 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 cytosol polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HeG2 cyt pA- J\ subGroups view=Junctions cellType=t2HEPG2 localization=CYTOSOL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHepg2CytosolPamJunctions\ type bed 6 +\ wgEncodeBroadHistoneHepg2ControlStdSig HepG2 Input bigWig 0.040000 9153.400391 HepG2 Input Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 272 189 0 157 222 127 206 1 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Input Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HepG2 Input\ subGroups view=Signal factor=zCTRL cellType=t2HEPG2 treatment=zNONE\ track wgEncodeBroadHistoneHepg2ControlStdSig\ type bigWig 0.040000 9153.400391\ wgEncodeHaibTfbsH1hescPou5f1sc9081V0416102RawRep1 hESC POU5F1 1 bigWig 0.306870 343.847992 H1-hESC POU5F1 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 272 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC POU5F1 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC POU5F1 1\ subGroups view=RawSignal factor=POU5F1SC9081 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescPou5f1sc9081V0416102RawRep1\ type bigWig 0.306870 343.847992\ wgEncodeUwTfbsHmfCtcfStdPkRep2 HMF CTCF Pk 2 narrowPeak HMF CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 272 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMF CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HMF CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3HMF rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHmfCtcfStdPkRep2\ type narrowPeak\ wgEncodeSydhTfbsK562P300sc584sc48343IggrabSig K562 p300 IgR bigWig 1.000000 12521.000000 K562 p300 SC48343 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 272 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 p300 SC48343 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 p300 IgR\ subGroups view=Signal factor=P300SC48343 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562P300sc584sc48343IggrabSig\ type bigWig 1.000000 12521.000000\ wgEncodeAwgTfbsSydhK562Stat1Ifna30UniPk K562+IFNa30 STAT1 narrowPeak K562 (IFNa30) TFBS Uniform Peaks of STAT1 from ENCODE/Yale/Analysis 1 272 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNa30) TFBS Uniform Peaks of STAT1 from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNa30 STAT1\ subGroups tier=a10 cellType=a10K562 factor=STAT1 lab=Yale\ track wgEncodeAwgTfbsSydhK562Stat1Ifna30UniPk\ wgEncodeRikenCageSknshCytosolPapPlusRawRep4 SKSH cyto pA+ + 4 bigWig 1.000000 435685.000000 SK-N-SH cytosol polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN 2 272 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH cytosol polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel SKSH cyto pA+ + 4\ subGroups view=PlusRawSignal cellType=t2SKNSH localization=cytosol rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageSknshCytosolPapPlusRawRep4\ type bigWig 1.000000 435685.000000\ wgEncodeCshlShortRnaSeqSknshNucleusShorttotalCiptapPlusRep3 SKSH nucl CIP + 1 bigWig 1.000000 8831757.000000 SK-N-SH CIP-TAP nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 272 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH CIP-TAP nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH nucl CIP + 1\ subGroups view=PlusSignal cellType=t2SKNSH localization=NUCLEUS protocol=CIPTAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshNucleusShorttotalCiptapPlusRep3\ type bigWig 1.000000 8831757.000000\ wgEncodeOpenChromDnaseStellateSig Stellate DS bigWig 0.000000 1.116200 Stellate DNaseI HS Density Signal from ENCODE/Duke 2 272 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Stellate DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Stellate DS\ subGroups view=SIG cellType=t3STELLATE treatment=zNONE\ track wgEncodeOpenChromDnaseStellateSig\ type bigWig 0.000000 1.116200\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_ctss_rev Tc:ARPE-19Emt_00hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_reverse 0 272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep3.CNhs14465.13627-146H9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13627-146H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_tpm_rev Tc:ARPE-19Emt_00hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_reverse 1 272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep3.CNhs14465.13627-146H9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13627-146H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF824FIL H1-hESC RAD21 2 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in H1-hESC from ENCODE 3 (ENCFF824FIL) 1 273 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of RAD21 in H1-hESC from ENCODE 3 (ENCFF824FIL)\ parent encTfChipPk off\ shortLabel H1-hESC RAD21 2\ subGroups cellType=H1-hESC factor=RAD21\ track encTfChipPkENCFF824FIL\ wgEncodeUwHistoneH7esH3k04me3StdDiffa5dHotspotsRep2 H7ES H3K4M3 Ht 2 broadPeak H7-hESC H3K4me3 diffProtA 5 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 273 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 diffProtA 5 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep2\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa5dHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseHcpeRawRep1 HCPEpiC Sg 1 bigWig 1.000000 10919.000000 HCPEpiC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 273 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCPEpiC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HCPEpiC Sg 1\ subGroups view=zRSig cellType=t3HCPEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHcpeRawRep1\ type bigWig 1.000000 10919.000000\ wgEncodeCshlLongRnaSeqHepg2CytosolLongnonpolyaMinusRawSigRep1 HeG2 cyt pA- - 1 bigWig 1.000000 12366078.000000 HepG2 cytosol polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 273 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 cytosol polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeG2 cyt pA- - 1\ subGroups view=MinusSignal cellType=t2HEPG2 localization=CYTOSOL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2CytosolLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 12366078.000000\ wgEncodeHaibTfbsH1hescPou5f1sc9081V0416102PkRep2 hESC POU5F1 2 broadPeak H1-hESC POU5F1 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 273 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC POU5F1 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC POU5F1 2\ subGroups view=Peaks factor=POU5F1SC9081 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescPou5f1sc9081V0416102PkRep2\ type broadPeak\ wgEncodeUwTfbsHmfCtcfStdRawRep2 HMF CTCF Sg 2 bigWig 1.000000 8513.000000 HMF CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 273 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMF CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HMF CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3HMF rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHmfCtcfStdRawRep2\ type bigWig 1.000000 8513.000000\ wgEncodeBroadHistoneHuvecCtcfStdPk HUVEC CTCF broadPeak HUVEC CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 273 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HUVEC CTCF\ subGroups view=Peaks factor=CTCF cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecCtcfStdPk\ type broadPeak\ wgEncodeSydhTfbsK562Pol2IggmusPk K562 Pol2 IgM narrowPeak K562 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 273 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks on\ shortLabel K562 Pol2 IgM\ subGroups view=Peaks factor=POL2 cellType=t1K562 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsK562Pol2IggmusPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Stat1Ifna6hUniPk K562+IFNa6h STAT1 narrowPeak K562 (IFNa6h) TFBS Uniform Peaks of STAT1 from ENCODE/Yale/Analysis 1 273 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNa6h) TFBS Uniform Peaks of STAT1 from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNa6h STAT1\ subGroups tier=a10 cellType=a10K562 factor=STAT1 lab=Yale\ track wgEncodeAwgTfbsSydhK562Stat1Ifna6hUniPk\ wgEncodeRikenCageSknshCytosolPapMinusRawRep3 SKSH cyto pA+ - 3 bigWig 1.000000 406628.000000 SK-N-SH cytosol polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN 2 273 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH cytosol polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel SKSH cyto pA+ - 3\ subGroups view=MinusRawSignal cellType=t2SKNSH localization=cytosol rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageSknshCytosolPapMinusRawRep3\ type bigWig 1.000000 406628.000000\ wgEncodeCshlShortRnaSeqSknshNucleusShorttotalCiptapPlusRep4 SKSH nucl CIP + 2 bigWig 1.000000 16963256.000000 SK-N-SH CIP-TAP nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 273 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH CIP-TAP nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH nucl CIP + 2\ subGroups view=PlusSignal cellType=t2SKNSH localization=NUCLEUS protocol=CIPTAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshNucleusShorttotalCiptapPlusRep4\ type bigWig 1.000000 16963256.000000\ wgEncodeOpenChromDnaseStellateBaseOverlapSignal Stellate OS bigWig 0.000000 209.000000 Stellate DNaseI HS Overlap Signal from ENCODE/Duke 2 273 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Stellate DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Stellate OS\ subGroups view=SIGBO cellType=t3STELLATE treatment=zNONE\ track wgEncodeOpenChromDnaseStellateBaseOverlapSignal\ type bigWig 0.000000 209.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_ctss_fwd Tc:ARPE-19Emt_00hr15minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_forward 0 273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep1.CNhs14466.13628-146I1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13628-146I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_tpm_fwd Tc:ARPE-19Emt_00hr15minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_forward 1 273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep1.CNhs14466.13628-146I1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13628-146I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF135DOZ H1-hESC RBBP5 narrowPeak Transcription Factor ChIP-seq Peaks of RBBP5 in H1-hESC from ENCODE 3 (ENCFF135DOZ) 1 274 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of RBBP5 in H1-hESC from ENCODE 3 (ENCFF135DOZ)\ parent encTfChipPk off\ shortLabel H1-hESC RBBP5\ subGroups cellType=H1-hESC factor=RBBP5\ track encTfChipPkENCFF135DOZ\ wgEncodeUwHistoneH7esH3k04me3StdDiffa5dPkRep2 H7ES H3K4M3 Pk 2 narrowPeak H7-hESC H3K4me3 diffProtA 5 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 274 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 diffProtA 5 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep2\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa5dPkRep2\ type narrowPeak\ wgEncodeUwDnaseHcpeHotspotsRep2 HCPEpiC Ht 2 broadPeak HCPEpiC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 274 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpiC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HCPEpiC Ht 2\ subGroups view=Hot cellType=t3HCPEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHcpeHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHepg2CytosolLongnonpolyaMinusRawSigRep2 HeG2 cyt pA- - 2 bigWig 1.000000 7925012.000000 HepG2 cytosol polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 274 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 cytosol polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeG2 cyt pA- - 2\ subGroups view=MinusSignal cellType=t2HEPG2 localization=CYTOSOL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2CytosolLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 7925012.000000\ wgEncodeHaibTfbsH1hescPou5f1sc9081V0416102RawRep2 hESC POU5F1 2 bigWig 0.160252 287.731995 H1-hESC POU5F1 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 274 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC POU5F1 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC POU5F1 2\ subGroups view=RawSignal factor=POU5F1SC9081 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescPou5f1sc9081V0416102RawRep2\ type bigWig 0.160252 287.731995\ wgEncodeUwTfbsHmfInputStdRawRep1 HMF In Sg 1 bigWig 1.000000 4624.000000 HMF Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 274 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMF Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HMF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HMF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHmfInputStdRawRep1\ type bigWig 1.000000 4624.000000\ wgEncodeBroadHistoneHuvecCtcfStdSig HUVEC CTCF bigWig 0.040000 5654.680176 HUVEC CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 274 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HUVEC CTCF\ subGroups view=Signal factor=CTCF cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecCtcfStdSig\ type bigWig 0.040000 5654.680176\ wgEncodeSydhTfbsK562Pol2IggmusSig K562 Pol2 IgM bigWig 0.000000 4259.700195 K562 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 274 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal on\ shortLabel K562 Pol2 IgM\ subGroups view=Signal factor=POL2 cellType=t1K562 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsK562Pol2IggmusSig\ type bigWig 0.000000 4259.700195\ wgEncodeAwgTfbsSydhK562Stat2Ifna30UniPk K562+IFNa30 STAT2 narrowPeak K562 (IFNa30) TFBS Uniform Peaks of STAT2 from ENCODE/Yale/Analysis 1 274 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNa30) TFBS Uniform Peaks of STAT2 from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNa30 STAT2\ subGroups tier=a10 cellType=a10K562 factor=STAT2 lab=Yale\ track wgEncodeAwgTfbsSydhK562Stat2Ifna30UniPk\ wgEncodeRikenCageSknshCytosolPapMinusRawRep4 SKSH cyto pA+ - 4 bigWig 1.000000 412276.000000 SK-N-SH cytosol polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN 2 274 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH cytosol polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel SKSH cyto pA+ - 4\ subGroups view=MinusRawSignal cellType=t2SKNSH localization=cytosol rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageSknshCytosolPapMinusRawRep4\ type bigWig 1.000000 412276.000000\ wgEncodeCshlShortRnaSeqSknshNucleusContigs SKSH nucl C bed 6 SK-N-SH nucleus small RNA-seq Contigs from ENCODE/CSHL 2 274 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel SKSH nucl C\ subGroups view=Contigs rep=Pooled cellType=t2SKNSH localization=NUCLEUS protocol=NONE rank=none\ track wgEncodeCshlShortRnaSeqSknshNucleusContigs\ type bed 6\ wgEncodeOpenChromDnaseT47dEst10nm30mPk T-47D Estr 30m Pk narrowPeak T-47D Estradiol 10 nM 30 m DNaseI HS Peaks from ENCODE/Duke 3 274 0 0 0 127 127 127 1 0 0 regulation 1 longLabel T-47D Estradiol 10 nM 30 m DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel T-47D Estr 30m Pk\ subGroups view=Peaks cellType=t3T47D treatment=EST10NM30M\ track wgEncodeOpenChromDnaseT47dEst10nm30mPk\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_ctss_rev Tc:ARPE-19Emt_00hr15minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_reverse 0 274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep1.CNhs14466.13628-146I1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13628-146I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_tpm_rev Tc:ARPE-19Emt_00hr15minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_reverse 1 274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep1.CNhs14466.13628-146I1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13628-146I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF453HPD H1-hESC REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in H1-hESC from ENCODE 3 (ENCFF453HPD) 1 275 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of REST in H1-hESC from ENCODE 3 (ENCFF453HPD)\ parent encTfChipPk off\ shortLabel H1-hESC REST 1\ subGroups cellType=H1-hESC factor=REST\ track encTfChipPkENCFF453HPD\ wgEncodeUwHistoneH7esH3k04me3StdDiffa5dRawRep2 H7ES H3K4M3 Sg 2 bigWig 1.000000 3239.000000 H7-hESC H3K4me3 diffProtA 5 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 275 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K4me3 diffProtA 5 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep2\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa5dRawRep2\ type bigWig 1.000000 3239.000000\ wgEncodeUwDnaseHcpePkRep2 HCPEpiC Pk 2 narrowPeak HCPEpiC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 275 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpiC DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HCPEpiC Pk 2\ subGroups view=Peaks cellType=t3HCPEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHcpePkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHepg2CytosolLongnonpolyaPlusRawSigRep1 HeG2 cyt pA- + 1 bigWig 1.000000 47250604.000000 HepG2 cytosol polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 275 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 cytosol polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeG2 cyt pA- + 1\ subGroups view=PlusSignal cellType=t2HEPG2 localization=CYTOSOL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2CytosolLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 47250604.000000\ wgEncodeHaibTfbsH1hescRad21V0416102PkRep1 hESC RAD21 V102 1 broadPeak H1-hESC RAD21 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 275 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC RAD21 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC RAD21 V102 1\ subGroups view=Peaks factor=RAD21 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescRad21V0416102PkRep1\ type broadPeak\ wgEncodeUwTfbsHpafCtcfStdHotspotsRep1 HPAF CTCF Ht 1 broadPeak HPAF CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 275 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAF CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HPAF CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HPAF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHpafCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHuvecEzh239875Pk HUVEC EZH2 broadPeak HUVEC EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 275 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HUVEC EZH2\ subGroups view=Peaks factor=EZH239875 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecEzh239875Pk\ type broadPeak\ wgEncodeSydhTfbsK562Pol2Ifna30StdPk K562 IFa3 Pol2 Sd narrowPeak K562 Pol2 Standard IFNa 30min ChIP-seq Peaks from ENCODE/SYDH 3 275 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Pol2 Standard IFNa 30min ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks on\ shortLabel K562 IFa3 Pol2 Sd\ subGroups view=Peaks factor=POL2 cellType=t1K562 control=STD treatment=IFNa30\ track wgEncodeSydhTfbsK562Pol2Ifna30StdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Stat2Ifna6hUniPk K562+IFNa6h STAT2 narrowPeak K562 (IFNa6h) TFBS Uniform Peaks of STAT2 from ENCODE/Yale/Analysis 1 275 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 (IFNa6h) TFBS Uniform Peaks of STAT2 from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562+IFNa6h STAT2\ subGroups tier=a10 cellType=a10K562 factor=STAT2 lab=Yale\ track wgEncodeAwgTfbsSydhK562Stat2Ifna6hUniPk\ wgEncodeRikenCageSknshCytosolPapAlnRep3 SKSH cyto pA+ A 3 bam SK-N-SH cytosol polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN 0 275 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH cytosol polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel SKSH cyto pA+ A 3\ subGroups view=Alignments cellType=t2SKNSH localization=cytosol rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageSknshCytosolPapAlnRep3\ type bam\ wgEncodeCshlShortRnaSeqSknshNucleusShorttotalMinusRep3 SKSH nucl - 1 bigWig 1.000000 17926340.000000 SK-N-SH nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 275 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH nucl - 1\ subGroups view=MinusSignal cellType=t2SKNSH localization=NUCLEUS protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshNucleusShorttotalMinusRep3\ type bigWig 1.000000 17926340.000000\ wgEncodeOpenChromDnaseT47dEst10nm30mSig T-47D Estr 30m DS bigWig 0.000000 0.817300 T-47D Estradiol 10 nM 30 m DNaseI HS Density Signal from ENCODE/Duke 2 275 0 0 0 127 127 127 1 0 0 regulation 0 longLabel T-47D Estradiol 10 nM 30 m DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel T-47D Estr 30m DS\ subGroups view=SIG cellType=t3T47D treatment=EST10NM30M\ track wgEncodeOpenChromDnaseT47dEst10nm30mSig\ type bigWig 0.000000 0.817300\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_ctss_fwd Tc:ARPE-19Emt_00hr15minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_forward 0 275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep2.CNhs14467.13629-146I2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13629-146I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_tpm_fwd Tc:ARPE-19Emt_00hr15minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_forward 1 275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep2.CNhs14467.13629-146I2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13629-146I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF885KLR H1-hESC REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in H1-hESC from ENCODE 3 (ENCFF885KLR) 1 276 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of REST in H1-hESC from ENCODE 3 (ENCFF885KLR)\ parent encTfChipPk off\ shortLabel H1-hESC REST 2\ subGroups cellType=H1-hESC factor=REST\ track encTfChipPkENCFF885KLR\ wgEncodeUwHistoneH7esH3k04me3StdDiffa9dHotspotsRep1 H7ES H3K4M3 Ht 1 broadPeak H7-hESC H3K4me3 diffProtA 9 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 276 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 diffProtA 9 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep1\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa9dHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseHcpeRawRep2 HCPEpiC Sg 2 bigWig 1.000000 39423.000000 HCPEpiC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 276 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCPEpiC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HCPEpiC Sg 2\ subGroups view=zRSig cellType=t3HCPEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHcpeRawRep2\ type bigWig 1.000000 39423.000000\ wgEncodeCshlLongRnaSeqHepg2CytosolLongnonpolyaPlusRawSigRep2 HeG2 cyt pA- + 2 bigWig 1.000000 33054432.000000 HepG2 cytosol polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 276 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 cytosol polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeG2 cyt pA- + 2\ subGroups view=PlusSignal cellType=t2HEPG2 localization=CYTOSOL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2CytosolLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 33054432.000000\ wgEncodeHaibTfbsH1hescRad21V0416102RawRep1 hESC RAD21 V102 1 bigWig 0.251183 126.785004 H1-hESC RAD21 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 276 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC RAD21 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC RAD21 V102 1\ subGroups view=RawSignal factor=RAD21 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescRad21V0416102RawRep1\ type bigWig 0.251183 126.785004\ wgEncodeUwTfbsHpafCtcfStdPkRep1 HPAF CTCF Pk 1 narrowPeak HPAF CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 276 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAF CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HPAF CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HPAF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHpafCtcfStdPkRep1\ type narrowPeak\ wgEncodeBroadHistoneHuvecEzh239875Sig HUVEC EZH2 bigWig 0.040000 30814.960938 HUVEC EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 276 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HUVEC EZH2\ subGroups view=Signal factor=EZH239875 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecEzh239875Sig\ type bigWig 0.040000 30814.960938\ wgEncodeSydhTfbsK562Pol2Ifna30StdSig K562 IFa3 Pol2 Sd bigWig 0.000000 12491.500000 K562 Pol2 Standard IFNa 30min ChIP-seq Signal from ENCODE/SYDH 2 276 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Pol2 Standard IFNa 30min ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal on\ shortLabel K562 IFa3 Pol2 Sd\ subGroups view=Signal factor=POL2 cellType=t1K562 control=STD treatment=IFNa30\ track wgEncodeSydhTfbsK562Pol2Ifna30StdSig\ type bigWig 0.000000 12491.500000\ wgEncodeAwgTfbsHaibK562Stat5asc74442V0422111UniPk K562 STAT5A narrowPeak K562 TFBS Uniform Peaks of STAT5A_(SC-74442) from ENCODE/HudsonAlpha/Analysis 1 276 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of STAT5A_(SC-74442) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 STAT5A\ subGroups tier=a10 cellType=a10K562 factor=STAT5A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Stat5asc74442V0422111UniPk\ wgEncodeRikenCageSknshCytosolPapAlnRep4 SKSH cyto pA+ A 4 bam SK-N-SH cytosol polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN 0 276 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH cytosol polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel SKSH cyto pA+ A 4\ subGroups view=Alignments cellType=t2SKNSH localization=cytosol rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageSknshCytosolPapAlnRep4\ type bam\ wgEncodeCshlShortRnaSeqSknshNucleusShorttotalMinusRep4 SKSH nucl - 2 bigWig 1.000000 22725982.000000 SK-N-SH nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 276 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH nucl - 2\ subGroups view=MinusSignal cellType=t2SKNSH localization=NUCLEUS protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshNucleusShorttotalMinusRep4\ type bigWig 1.000000 22725982.000000\ wgEncodeOpenChromDnaseT47dEst10nm30mBaseOverlapSignal T-47D Estr 30m OS bigWig 0.000000 220.000000 T-47D Estradiol 10 nM 30 m DNaseI HS Overlap Signal from ENCODE/Duke 2 276 0 0 0 127 127 127 1 0 0 regulation 0 longLabel T-47D Estradiol 10 nM 30 m DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel T-47D Estr 30m OS\ subGroups view=SIGBO cellType=t3T47D treatment=EST10NM30M\ track wgEncodeOpenChromDnaseT47dEst10nm30mBaseOverlapSignal\ type bigWig 0.000000 220.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_ctss_rev Tc:ARPE-19Emt_00hr15minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_reverse 0 276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep2.CNhs14467.13629-146I2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13629-146I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_tpm_rev Tc:ARPE-19Emt_00hr15minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_reverse 1 276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep2.CNhs14467.13629-146I2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13629-146I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF447QXT H1-hESC RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in H1-hESC from ENCODE 3 (ENCFF447QXT) 1 277 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of RFX5 in H1-hESC from ENCODE 3 (ENCFF447QXT)\ parent encTfChipPk off\ shortLabel H1-hESC RFX5\ subGroups cellType=H1-hESC factor=RFX5\ track encTfChipPkENCFF447QXT\ wgEncodeUwHistoneH7esH3k04me3StdDiffa9dPkRep1 H7ES H3K4M3 Pk 1 narrowPeak H7-hESC H3K4me3 diffProtA 9 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 277 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 diffProtA 9 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep1\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa9dPkRep1\ type narrowPeak\ wgEncodeUwDnaseHct116HotspotsRep1 HCT-116 Ht 1 broadPeak HCT-116 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 277 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HCT-116 Ht 1\ subGroups view=Hot cellType=t3HCT116 rep=rep1 treatment=None\ track wgEncodeUwDnaseHct116HotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHepg2CytosolPapAlnRep1 HeG2 cyt pA+ A 1 bam HepG2 cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 277 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeG2 cyt pA+ A 1\ subGroups view=Alignments cellType=t2HEPG2 localization=CYTOSOL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2CytosolPapAlnRep1\ type bam\ wgEncodeHaibTfbsH1hescRad21V0416102PkRep2 hESC RAD21 V102 2 broadPeak H1-hESC RAD21 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 277 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC RAD21 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC RAD21 V102 2\ subGroups view=Peaks factor=RAD21 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescRad21V0416102PkRep2\ type broadPeak\ wgEncodeUwTfbsHpafCtcfStdRawRep1 HPAF CTCF Sg 1 bigWig 1.000000 12801.000000 HPAF CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 277 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPAF CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HPAF CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HPAF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHpafCtcfStdRawRep1\ type bigWig 1.000000 12801.000000\ wgEncodeBroadHistoneHuvecH2azPk HUVEC H2A.Z broadPeak HUVEC H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 277 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HUVEC H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH2azPk\ type broadPeak\ wgEncodeSydhTfbsK562Pol2Ifna6hStdPk K562 IFa6 Pol2 Sd narrowPeak K562 Pol2 Standard IFNa 6hrs ChIP-seq Peaks from ENCODE/SYDH 3 277 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Pol2 Standard IFNa 6hrs ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks on\ shortLabel K562 IFa6 Pol2 Sd\ subGroups view=Peaks factor=POL2 cellType=t1K562 control=STD treatment=IFNa6h\ track wgEncodeSydhTfbsK562Pol2Ifna6hStdPk\ type narrowPeak\ wgEncodeAwgTfbsHaibK562Taf1V0416101UniPk K562 TAF1 narrowPeak K562 TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis 1 277 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 TAF1\ subGroups tier=a10 cellType=a10K562 factor=TAF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Taf1V0416101UniPk\ wgEncodeCshlShortRnaSeqSknshNucleusShorttotalPlusRep3 SKSH nucl + 1 bigWig 1.000000 2670928.000000 SK-N-SH nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 277 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH nucl + 1\ subGroups view=PlusSignal cellType=t2SKNSH localization=NUCLEUS protocol=NONE rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshNucleusShorttotalPlusRep3\ type bigWig 1.000000 2670928.000000\ wgEncodeRikenCageSknshNucleusPapTssHmm SKSH nucl pA+ bed 6 SK-N-SH nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 277 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel SKSH nucl pA+\ subGroups view=TssHmm cellType=t2SKNSH localization=nucleus rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageSknshNucleusPapTssHmm\ type bed 6\ wgEncodeOpenChromDnaseT47dPk T-47D Pk narrowPeak T-47D DNaseI HS Peaks from ENCODE/Duke 3 277 0 0 0 127 127 127 1 0 0 regulation 1 longLabel T-47D DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel T-47D Pk\ subGroups view=Peaks cellType=t3T47D treatment=zNONE\ track wgEncodeOpenChromDnaseT47dPk\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_ctss_fwd Tc:ARPE-19Emt_00hr15minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_forward 0 277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep3.CNhs14468.13630-146I3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13630-146I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_tpm_fwd Tc:ARPE-19Emt_00hr15minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_forward 1 277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep3.CNhs14468.13630-146I3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13630-146I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF193YAN H1-hESC RNF2 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in H1-hESC from ENCODE 3 (ENCFF193YAN) 1 278 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in H1-hESC from ENCODE 3 (ENCFF193YAN)\ parent encTfChipPk off\ shortLabel H1-hESC RNF2\ subGroups cellType=H1-hESC factor=RNF2\ track encTfChipPkENCFF193YAN\ wgEncodeUwHistoneH7esH3k04me3StdDiffa9dRawRep1 H7ES H3K4M3 Sg 1 bigWig 1.000000 3462.000000 H7-hESC H3K4me3 diffProtA 9 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 278 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K4me3 diffProtA 9 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep1\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa9dRawRep1\ type bigWig 1.000000 3462.000000\ wgEncodeUwDnaseHct116PkRep1 HCT-116 Pk 1 narrowPeak HCT-116 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 278 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HCT-116 Pk 1\ subGroups view=Peaks cellType=t3HCT116 rep=rep1 treatment=None\ track wgEncodeUwDnaseHct116PkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHepg2CytosolPapAlnRep2 HeG2 cyt pA+ A 2 bam HepG2 cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 278 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeG2 cyt pA+ A 2\ subGroups view=Alignments cellType=t2HEPG2 localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2CytosolPapAlnRep2\ type bam\ wgEncodeHaibTfbsH1hescRad21V0416102RawRep2 hESC RAD21 V102 2 bigWig 0.076561 154.078995 H1-hESC RAD21 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 278 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC RAD21 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC RAD21 V102 2\ subGroups view=RawSignal factor=RAD21 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescRad21V0416102RawRep2\ type bigWig 0.076561 154.078995\ wgEncodeUwTfbsHpafCtcfStdHotspotsRep2 HPAF CTCF Ht 2 broadPeak HPAF CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 278 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAF CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HPAF CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3HPAF rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHpafCtcfStdHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneHuvecH2azSig HUVEC H2A.Z bigWig 0.040000 14335.559570 HUVEC H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 278 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HUVEC H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH2azSig\ type bigWig 0.040000 14335.559570\ wgEncodeSydhTfbsK562Pol2Ifna6hStdSig K562 IFa6 Pol2 Sd bigWig 0.000000 11960.299805 K562 Pol2 Standard IFNa 6hrs ChIP-seq Signal from ENCODE/SYDH 2 278 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Pol2 Standard IFNa 6hrs ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal on\ shortLabel K562 IFa6 Pol2 Sd\ subGroups view=Signal factor=POL2 cellType=t1K562 control=STD treatment=IFNa6h\ track wgEncodeSydhTfbsK562Pol2Ifna6hStdSig\ type bigWig 0.000000 11960.299805\ wgEncodeAwgTfbsHaibK562Taf7sc101167V0416101UniPk K562 TAF7 narrowPeak K562 TFBS Uniform Peaks of TAF7_(SC-101167) from ENCODE/HudsonAlpha/Analysis 1 278 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of TAF7_(SC-101167) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 TAF7\ subGroups tier=a10 cellType=a10K562 factor=TAF7 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Taf7sc101167V0416101UniPk\ wgEncodeCshlShortRnaSeqSknshNucleusShorttotalPlusRep4 SKSH nucl + 2 bigWig 1.000000 3396263.000000 SK-N-SH nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 278 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH nucl + 2\ subGroups view=PlusSignal cellType=t2SKNSH localization=NUCLEUS protocol=NONE rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshNucleusShorttotalPlusRep4\ type bigWig 1.000000 3396263.000000\ wgEncodeRikenCageSknshNucleusPapPlusRawRep3 SKSH nucl pA+ + 3 bigWig 1.000000 8311110.000000 SK-N-SH nucleus polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN 2 278 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH nucleus polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel SKSH nucl pA+ + 3\ subGroups view=PlusRawSignal cellType=t2SKNSH localization=nucleus rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageSknshNucleusPapPlusRawRep3\ type bigWig 1.000000 8311110.000000\ wgEncodeOpenChromDnaseT47dSig T-47D DS bigWig 0.000000 1.376400 T-47D DNaseI HS Density Signal from ENCODE/Duke 2 278 0 0 0 127 127 127 1 0 0 regulation 0 longLabel T-47D DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel T-47D DS\ subGroups view=SIG cellType=t3T47D treatment=zNONE\ track wgEncodeOpenChromDnaseT47dSig\ type bigWig 0.000000 1.376400\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_ctss_rev Tc:ARPE-19Emt_00hr15minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_reverse 0 278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep3.CNhs14468.13630-146I3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13630-146I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_tpm_rev Tc:ARPE-19Emt_00hr15minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_reverse 1 278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep3.CNhs14468.13630-146I3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13630-146I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF369JAI H1-hESC RXRA narrowPeak Transcription Factor ChIP-seq Peaks of RXRA in H1-hESC from ENCODE 3 (ENCFF369JAI) 1 279 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of RXRA in H1-hESC from ENCODE 3 (ENCFF369JAI)\ parent encTfChipPk off\ shortLabel H1-hESC RXRA\ subGroups cellType=H1-hESC factor=RXRA\ track encTfChipPkENCFF369JAI\ wgEncodeUwHistoneH7esH3k04me3StdDiffa9dHotspotsRep2 H7ES H3K4M3 Ht 2 broadPeak H7-hESC H3K4me3 diffProtA 9 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 279 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 diffProtA 9 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep2\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa9dHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseHct116RawRep1 HCT-116 Sg 1 bigWig 1.000000 66499.000000 HCT-116 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 279 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HCT-116 Sg 1\ subGroups view=zRSig cellType=t3HCT116 rep=rep1 treatment=None\ track wgEncodeUwDnaseHct116RawRep1\ type bigWig 1.000000 66499.000000\ wgEncodeCshlLongRnaSeqHepg2CytosolPapContigs HeG2 cyt pA+ C bed 6 + HepG2 cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 279 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HeG2 cyt pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HEPG2 localization=CYTOSOL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqHepg2CytosolPapContigs\ type bed 6 +\ wgEncodeHaibTfbsH1hescRxraV0416102PkRep1 hESC RXRA V102 1 broadPeak H1-hESC RXRA v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 279 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC RXRA v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC RXRA V102 1\ subGroups view=Peaks factor=RXRA cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescRxraV0416102PkRep1\ type broadPeak\ wgEncodeUwTfbsHpafCtcfStdPkRep2 HPAF CTCF Pk 2 narrowPeak HPAF CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 279 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAF CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HPAF CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3HPAF rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHpafCtcfStdPkRep2\ type narrowPeak\ wgEncodeBroadHistoneHuvecH3k4me1StdPk HUVEC H3K4m1 broadPeak HUVEC H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 279 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HUVEC H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k4me1StdPk\ type broadPeak\ wgEncodeSydhTfbsK562Pol2Ifng30StdPk K562 IFg3 Pol2 Sd narrowPeak K562 Pol2 Standard IFNg 30min ChIP-seq Peaks from ENCODE/SYDH 3 279 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Pol2 Standard IFNg 30min ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks on\ shortLabel K562 IFg3 Pol2 Sd\ subGroups view=Peaks factor=POL2 cellType=t1K562 control=STD treatment=IFNg30\ track wgEncodeSydhTfbsK562Pol2Ifng30StdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Tal1sc12984IggmusUniPk K562 TAL1 narrowPeak K562 TFBS Uniform Peaks of TAL1_(SC-12984) from ENCODE/Stanford/Analysis 1 279 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of TAL1_(SC-12984) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 TAL1\ subGroups tier=a10 cellType=a10K562 factor=TAL1 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Tal1sc12984IggmusUniPk\ wgEncodeRikenCageSknshNucleusPapPlusRawRep4 SKSH nucl pA+ + 4 bigWig 1.000000 6268380.000000 SK-N-SH nucleus polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN 2 279 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH nucleus polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel SKSH nucl pA+ + 4\ subGroups view=PlusRawSignal cellType=t2SKNSH localization=nucleus rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageSknshNucleusPapPlusRawRep4\ type bigWig 1.000000 6268380.000000\ wgEncodeCshlShortRnaSeqSknshNucleusTapContigs SKSH nucl TAP C bed 6 SK-N-SH TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL 2 279 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel SKSH nucl TAP C\ subGroups view=Contigs cellType=t2SKNSH localization=NUCLEUS protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqSknshNucleusTapContigs\ type bed 6\ wgEncodeOpenChromDnaseT47dBaseOverlapSignal T-47D OS bigWig 0.000000 251.000000 T-47D DNaseI HS Overlap Signal from ENCODE/Duke 2 279 0 0 0 127 127 127 1 0 0 regulation 0 longLabel T-47D DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel T-47D OS\ subGroups view=SIGBO cellType=t3T47D treatment=zNONE\ track wgEncodeOpenChromDnaseT47dBaseOverlapSignal\ type bigWig 0.000000 251.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_ctss_fwd Tc:ARPE-19Emt_00hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_forward 0 279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep1.CNhs14469.13631-146I4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13631-146I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_tpm_fwd Tc:ARPE-19Emt_00hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_forward 1 279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep1.CNhs14469.13631-146I4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13631-146I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF361QZZ H1-hESC SAP30 narrowPeak Transcription Factor ChIP-seq Peaks of SAP30 in H1-hESC from ENCODE 3 (ENCFF361QZZ) 1 280 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of SAP30 in H1-hESC from ENCODE 3 (ENCFF361QZZ)\ parent encTfChipPk off\ shortLabel H1-hESC SAP30\ subGroups cellType=H1-hESC factor=SAP30\ track encTfChipPkENCFF361QZZ\ wgEncodeUwHistoneH7esH3k04me3StdDiffa9dPkRep2 H7ES H3K4M3 Pk 2 narrowPeak H7-hESC H3K4me3 diffProtA 9 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 280 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 diffProtA 9 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep2\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa9dPkRep2\ type narrowPeak\ wgEncodeUwDnaseHct116HotspotsRep2 HCT-116 Ht 2 broadPeak HCT-116 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 280 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HCT-116 Ht 2\ subGroups view=Hot cellType=t3HCT116 rep=rep2 treatment=None\ track wgEncodeUwDnaseHct116HotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHepg2CytosolPapJunctions HeG2 cyt pA+ J bed 6 + HepG2 cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 280 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HeG2 cyt pA+ J\ subGroups view=Junctions cellType=t2HEPG2 localization=CYTOSOL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHepg2CytosolPapJunctions\ type bed 6 +\ wgEncodeHaibTfbsH1hescRxraV0416102RawRep1 hESC RXRA V102 1 bigWig 0.296417 244.766998 H1-hESC RXRA v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 280 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC RXRA v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC RXRA V102 1\ subGroups view=RawSignal factor=RXRA cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescRxraV0416102RawRep1\ type bigWig 0.296417 244.766998\ wgEncodeUwTfbsHpafCtcfStdRawRep2 HPAF CTCF Sg 2 bigWig 1.000000 15544.000000 HPAF CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 280 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPAF CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HPAF CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3HPAF rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHpafCtcfStdRawRep2\ type bigWig 1.000000 15544.000000\ wgEncodeBroadHistoneHuvecH3k4me1StdSig HUVEC H3K4m1 bigWig 0.040000 4498.640137 HUVEC H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 280 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HUVEC H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k4me1StdSig\ type bigWig 0.040000 4498.640137\ wgEncodeSydhTfbsK562Pol2Ifng30StdSig K562 IFg3 Pol2 Sd bigWig 0.000000 27118.400391 K562 Pol2 Standard IFNg 30min ChIP-seq Signal from ENCODE/SYDH 2 280 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Pol2 Standard IFNg 30min ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal on\ shortLabel K562 IFg3 Pol2 Sd\ subGroups view=Signal factor=POL2 cellType=t1K562 control=STD treatment=IFNg30\ track wgEncodeSydhTfbsK562Pol2Ifng30StdSig\ type bigWig 0.000000 27118.400391\ wgEncodeAwgTfbsSydhK562Tblr1ab24550IggrabUniPk K562 TBL1XR1 s narrowPeak K562 TFBS Uniform Peaks of TBLR1_(ab24550) from ENCODE/Stanford/Analysis 1 280 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of TBLR1_(ab24550) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 TBL1XR1 s\ subGroups tier=a10 cellType=a10K562 factor=TBL1XR1 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Tblr1ab24550IggrabUniPk\ wgEncodeRikenCageSknshNucleusPapMinusRawRep3 SKSH nucl pA+ - 3 bigWig 1.000000 499385.000000 SK-N-SH nucleus polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN 2 280 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH nucleus polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel SKSH nucl pA+ - 3\ subGroups view=MinusRawSignal cellType=t2SKNSH localization=nucleus rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageSknshNucleusPapMinusRawRep3\ type bigWig 1.000000 499385.000000\ wgEncodeCshlShortRnaSeqSknshNucleusShorttotalTapMinusRep3 SKSH nucl TAP - 1 bigWig 1.000000 24639678.000000 SK-N-SH TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 280 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH nucl TAP - 1\ subGroups view=MinusSignal cellType=t2SKNSH localization=NUCLEUS protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshNucleusShorttotalTapMinusRep3\ type bigWig 1.000000 24639678.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_ctss_rev Tc:ARPE-19Emt_00hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_reverse 0 280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep1.CNhs14469.13631-146I4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13631-146I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_tpm_rev Tc:ARPE-19Emt_00hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_reverse 1 280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep1.CNhs14469.13631-146I4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13631-146I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseUrothelUt189PkV2 Urothel UT189 Pk narrowPeak Urothelia UT189 DNaseI HS Peaks from ENCODE/Duke 3 280 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Urothelia UT189 DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Urothel UT189 Pk\ subGroups view=Peaks cellType=t3UROTHELIA treatment=UT189\ track wgEncodeOpenChromDnaseUrothelUt189PkV2\ type narrowPeak\ encTfChipPkENCFF820OMK H1-hESC SIN3A 1 narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in H1-hESC from ENCODE 3 (ENCFF820OMK) 1 281 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in H1-hESC from ENCODE 3 (ENCFF820OMK)\ parent encTfChipPk off\ shortLabel H1-hESC SIN3A 1\ subGroups cellType=H1-hESC factor=SIN3A\ track encTfChipPkENCFF820OMK\ wgEncodeUwHistoneH7esH3k04me3StdDiffa9dRawRep2 H7ES H3K4M3 Sg 2 bigWig 1.000000 4385.000000 H7-hESC H3K4me3 diffProtA 9 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 281 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K4me3 diffProtA 9 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep2\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa9dRawRep2\ type bigWig 1.000000 4385.000000\ wgEncodeUwDnaseHct116PkRep2 HCT-116 Pk 2 narrowPeak HCT-116 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 281 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HCT-116 Pk 2\ subGroups view=Peaks cellType=t3HCT116 rep=rep2 treatment=None\ track wgEncodeUwDnaseHct116PkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHepg2CytosolPapMinusRawSigRep1 HeG2 cyt pA+ - 1 bigWig 1.000000 396313.000000 HepG2 cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 281 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeG2 cyt pA+ - 1\ subGroups view=MinusSignal cellType=t2HEPG2 localization=CYTOSOL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2CytosolPapMinusRawSigRep1\ type bigWig 1.000000 396313.000000\ wgEncodeHaibTfbsH1hescRxraV0416102PkRep2 hESC RXRA V102 2 broadPeak H1-hESC RXRA v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 281 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC RXRA v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC RXRA V102 2\ subGroups view=Peaks factor=RXRA cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescRxraV0416102PkRep2\ type broadPeak\ wgEncodeUwTfbsHpafInputStdRawRep1 HPAF In Sg 1 bigWig 1.000000 15992.000000 HPAF Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 281 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPAF Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HPAF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HPAF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHpafInputStdRawRep1\ type bigWig 1.000000 15992.000000\ wgEncodeBroadHistoneHuvecH3k4me2StdPk HUVEC H3K4m2 broadPeak HUVEC H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 281 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HUVEC H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k4me2StdPk\ type broadPeak\ wgEncodeSydhTfbsK562Pol2Ifng6hStdPk K562 IFg6 Pol2 Sd narrowPeak K562 Pol2 Standard IFNg 6hrs ChIP-seq Peaks from ENCODE/SYDH 3 281 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Pol2 Standard IFNg 6hrs ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks on\ shortLabel K562 IFg6 Pol2 Sd\ subGroups view=Peaks factor=POL2 cellType=t1K562 control=STD treatment=IFNg6h\ track wgEncodeSydhTfbsK562Pol2Ifng6hStdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Tblr1nb600270IggrabUniPk K562 TBL1XR1 s2 narrowPeak K562 TFBS Uniform Peaks of TBLR1_(NB600-270) from ENCODE/Stanford/Analysis 1 281 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of TBLR1_(NB600-270) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 TBL1XR1 s2\ subGroups tier=a10 cellType=a10K562 factor=TBL1XR1 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Tblr1nb600270IggrabUniPk\ wgEncodeRikenCageSknshNucleusPapMinusRawRep4 SKSH nucl pA+ - 4 bigWig 1.000000 370864.000000 SK-N-SH nucleus polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN 2 281 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH nucleus polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel SKSH nucl pA+ - 4\ subGroups view=MinusRawSignal cellType=t2SKNSH localization=nucleus rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageSknshNucleusPapMinusRawRep4\ type bigWig 1.000000 370864.000000\ wgEncodeCshlShortRnaSeqSknshNucleusShorttotalTapMinusRep4 SKSH nucl TAP - 2 bigWig 1.000000 19567104.000000 SK-N-SH TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 281 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKSH nucl TAP - 2\ subGroups view=MinusSignal cellType=t2SKNSH localization=NUCLEUS protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshNucleusShorttotalTapMinusRep4\ type bigWig 1.000000 19567104.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_ctss_fwd Tc:ARPE-19Emt_00hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_forward 0 281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep2.CNhs14470.13632-146I5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13632-146I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_tpm_fwd Tc:ARPE-19Emt_00hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_forward 1 281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep2.CNhs14470.13632-146I5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13632-146I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseUrothelUt189SigV2 Urothel UT189 DS bigWig 0.000000 0.876800 Urothelia UT189 DNaseI HS Density Signal from ENCODE/Duke 2 281 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Urothelia UT189 DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Urothel UT189 DS\ subGroups view=SIG cellType=t3UROTHELIA treatment=UT189\ track wgEncodeOpenChromDnaseUrothelUt189SigV2\ type bigWig 0.000000 0.876800\ encTfChipPkENCFF184HWT H1-hESC SIN3A 2 narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in H1-hESC from ENCODE 3 (ENCFF184HWT) 1 282 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in H1-hESC from ENCODE 3 (ENCFF184HWT)\ parent encTfChipPk off\ shortLabel H1-hESC SIN3A 2\ subGroups cellType=H1-hESC factor=SIN3A\ track encTfChipPkENCFF184HWT\ wgEncodeUwHistoneH7esH3k04me3StdDiffa14dHotspotsRep1 H7ES H3K4M3 Ht 1 broadPeak H7-hESC H3K4me3 diffProtA 14 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 282 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 diffProtA 14 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep1\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa14dHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseHct116RawRep2 HCT-116 Sg 2 bigWig 1.000000 56421.000000 HCT-116 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 282 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HCT-116 Sg 2\ subGroups view=zRSig cellType=t3HCT116 rep=rep2 treatment=None\ track wgEncodeUwDnaseHct116RawRep2\ type bigWig 1.000000 56421.000000\ wgEncodeCshlLongRnaSeqHepg2CytosolPapMinusRawSigRep2 HeG2 cyt pA+ - 2 bigWig 1.000000 394467.000000 HepG2 cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 282 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeG2 cyt pA+ - 2\ subGroups view=MinusSignal cellType=t2HEPG2 localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2CytosolPapMinusRawSigRep2\ type bigWig 1.000000 394467.000000\ wgEncodeHaibTfbsH1hescRxraV0416102RawRep2 hESC RXRA V102 2 bigWig 0.402909 238.623001 H1-hESC RXRA v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 282 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC RXRA v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC RXRA V102 2\ subGroups view=RawSignal factor=RXRA cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescRxraV0416102RawRep2\ type bigWig 0.402909 238.623001\ wgEncodeUwTfbsHpfCtcfStdHotspotsRep1 HPF CTCF Ht 1 broadPeak HPF CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 282 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPF CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HPF CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HPF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHpfCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHuvecH3k4me2StdSig HUVEC H3K4m2 bigWig 0.040000 5846.080078 HUVEC H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 282 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HUVEC H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k4me2StdSig\ type bigWig 0.040000 5846.080078\ wgEncodeSydhTfbsK562Pol2Ifng6hStdSig K562 IFg6 Pol2 Sd bigWig 0.000000 21570.699219 K562 Pol2 Standard IFNg 6hrs ChIP-seq Signal from ENCODE/SYDH 2 282 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Pol2 Standard IFNg 6hrs ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal on\ shortLabel K562 IFg6 Pol2 Sd\ subGroups view=Signal factor=POL2 cellType=t1K562 control=STD treatment=IFNg6h\ track wgEncodeSydhTfbsK562Pol2Ifng6hStdSig\ type bigWig 0.000000 21570.699219\ wgEncodeAwgTfbsSydhK562TbpIggmusUniPk K562 TBP narrowPeak K562 TFBS Uniform Peaks of TBP from ENCODE/Stanford/Analysis 1 282 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of TBP from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 TBP\ subGroups tier=a10 cellType=a10K562 factor=TBP lab=Stanford\ track wgEncodeAwgTfbsSydhK562TbpIggmusUniPk\ wgEncodeRikenCageSknshNucleusPapAlnRep3 SKSH nucl pA+ A 3 bam SK-N-SH nucleus polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN 0 282 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH nucleus polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel SKSH nucl pA+ A 3\ subGroups view=Alignments cellType=t2SKNSH localization=nucleus rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageSknshNucleusPapAlnRep3\ type bam\ wgEncodeCshlShortRnaSeqSknshNucleusShorttotalTapPlusRep3 SKSH nucl TAP + 1 bigWig 1.000000 27761852.000000 SK-N-SH TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 282 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH nucl TAP + 1\ subGroups view=PlusSignal cellType=t2SKNSH localization=NUCLEUS protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshNucleusShorttotalTapPlusRep3\ type bigWig 1.000000 27761852.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_ctss_rev Tc:ARPE-19Emt_00hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_reverse 0 282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep2.CNhs14470.13632-146I5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13632-146I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_tpm_rev Tc:ARPE-19Emt_00hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_reverse 1 282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep2.CNhs14470.13632-146I5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13632-146I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseUrothelUt189BaseOverlapSignalV2 Urothel UT189 OS bigWig 0.000000 206.000000 Urothelia UT189 DNaseI HS Overlap Signal from ENCODE/Duke 2 282 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Urothelia UT189 DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Urothel UT189 OS\ subGroups view=SIGBO cellType=t3UROTHELIA treatment=UT189\ track wgEncodeOpenChromDnaseUrothelUt189BaseOverlapSignalV2\ type bigWig 0.000000 206.000000\ encTfChipPkENCFF719RAM H1-hESC SIRT6 narrowPeak Transcription Factor ChIP-seq Peaks of SIRT6 in H1-hESC from ENCODE 3 (ENCFF719RAM) 1 283 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of SIRT6 in H1-hESC from ENCODE 3 (ENCFF719RAM)\ parent encTfChipPk off\ shortLabel H1-hESC SIRT6\ subGroups cellType=H1-hESC factor=SIRT6\ track encTfChipPkENCFF719RAM\ wgEncodeUwHistoneH7esH3k04me3StdDiffa14dPkRep1 H7ES H3K4M3 Pk 1 narrowPeak H7-hESC H3K4me3 diffProtA 14 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 283 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 diffProtA 14 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep1\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa14dPkRep1\ type narrowPeak\ wgEncodeUwDnaseHeeHotspotsRep1 HEEpiC Ht 1 broadPeak HEEpiC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 283 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpiC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HEEpiC Ht 1\ subGroups view=Hot cellType=t3HEEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHeeHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHepg2CytosolPapPlusRawSigRep1 HeG2 cyt pA+ + 1 bigWig 1.000000 1453816.000000 HepG2 cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 283 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeG2 cyt pA+ + 1\ subGroups view=PlusSignal cellType=t2HEPG2 localization=CYTOSOL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2CytosolPapPlusRawSigRep1\ type bigWig 1.000000 1453816.000000\ wgEncodeHaibTfbsH1hescSin3ak20Pcr1xPkRep1 hESC Sin3A PCR1 1 broadPeak H1-hESC Sin3Ak-20 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 283 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Sin3Ak-20 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC Sin3A PCR1 1\ subGroups view=Peaks factor=SIN3AK20 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescSin3ak20Pcr1xPkRep1\ type broadPeak\ wgEncodeUwTfbsHpfCtcfStdPkRep1 HPF CTCF Pk 1 narrowPeak HPF CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 283 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPF CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HPF CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HPF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHpfCtcfStdPkRep1\ type narrowPeak\ wgEncodeBroadHistoneHuvecH3k4me3StdPk HUVEC H3K4m3 broadPeak HUVEC H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 283 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HUVEC H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k4me3StdPk\ type broadPeak\ wgEncodeSydhTfbsK562Pol2StdPk K562 Pol2 Std narrowPeak K562 Pol2 Standard ChIP-seq Peaks from ENCODE/SYDH 3 283 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Pol2 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks on\ shortLabel K562 Pol2 Std\ subGroups view=Peaks factor=POL2 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Pol2StdPk\ type narrowPeak\ wgEncodeAwgTfbsHaibK562Tead4sc101184V0422111UniPk K562 TEAD4 narrowPeak K562 TFBS Uniform Peaks of TEAD4_(SC-101184) from ENCODE/HudsonAlpha/Analysis 1 283 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of TEAD4_(SC-101184) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 TEAD4\ subGroups tier=a10 cellType=a10K562 factor=TEAD4 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Tead4sc101184V0422111UniPk\ wgEncodeRikenCageSknshNucleusPapAlnRep4 SKSH nucl pA+ A 4 bam SK-N-SH nucleus polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN 0 283 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH nucleus polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel SKSH nucl pA+ A 4\ subGroups view=Alignments cellType=t2SKNSH localization=nucleus rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageSknshNucleusPapAlnRep4\ type bam\ wgEncodeCshlShortRnaSeqSknshNucleusShorttotalTapPlusRep4 SKSH nucl TAP + 2 bigWig 1.000000 13348455.000000 SK-N-SH TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 283 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKSH nucl TAP + 2\ subGroups view=PlusSignal cellType=t2SKNSH localization=NUCLEUS protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshNucleusShorttotalTapPlusRep4\ type bigWig 1.000000 13348455.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_ctss_fwd Tc:ARPE-19Emt_00hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_forward 0 283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep3.CNhs14471.13633-146I6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13633-146I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_tpm_fwd Tc:ARPE-19Emt_00hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_forward 1 283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep3.CNhs14471.13633-146I6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13633-146I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseUrothelPkV2 Urothel Pk narrowPeak Urothelia DNaseI HS Peaks from ENCODE/Duke 3 283 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Urothelia DNaseI HS Peaks from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewPeaks off\ shortLabel Urothel Pk\ subGroups view=Peaks cellType=t3UROTHELIA treatment=zNONE\ track wgEncodeOpenChromDnaseUrothelPkV2\ type narrowPeak\ wgEncodeCshlShortRnaSeqAg04450CellShorttotalTapContigs AG50 cell TAP C bed 6 AG04450 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 284 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG04450 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel AG50 cell TAP C\ subGroups view=Contigs cellType=t3AG04450 localization=CELL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqAg04450CellShorttotalTapContigs\ type bed 6\ encTfChipPkENCFF318SDF H1-hESC SIX5 narrowPeak Transcription Factor ChIP-seq Peaks of SIX5 in H1-hESC from ENCODE 3 (ENCFF318SDF) 1 284 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of SIX5 in H1-hESC from ENCODE 3 (ENCFF318SDF)\ parent encTfChipPk off\ shortLabel H1-hESC SIX5\ subGroups cellType=H1-hESC factor=SIX5\ track encTfChipPkENCFF318SDF\ wgEncodeUwHistoneH7esH3k04me3StdDiffa14dRawRep1 H7ES H3K4M3 Sg 1 bigWig 1.000000 2473.000000 H7-hESC H3K4me3 diffProtA 14 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 284 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K4me3 diffProtA 14 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep1\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa14dRawRep1\ type bigWig 1.000000 2473.000000\ wgEncodeUwDnaseHeePkRep1 HEEpiC Pk 1 narrowPeak HEEpiC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 284 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpiC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HEEpiC Pk 1\ subGroups view=Peaks cellType=t3HEEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHeePkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHepg2CytosolPapPlusRawSigRep2 HeG2 cyt pA+ + 2 bigWig 1.000000 856366.000000 HepG2 cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 284 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeG2 cyt pA+ + 2\ subGroups view=PlusSignal cellType=t2HEPG2 localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2CytosolPapPlusRawSigRep2\ type bigWig 1.000000 856366.000000\ wgEncodeHaibTfbsH1hescSin3ak20Pcr1xRawRep1 hESC Sin3A PCR1 1 bigWig 0.310000 224.750000 H1-hESC Sin3Ak-20 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 284 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Sin3Ak-20 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC Sin3A PCR1 1\ subGroups view=RawSignal factor=SIN3AK20 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescSin3ak20Pcr1xRawRep1\ type bigWig 0.310000 224.750000\ wgEncodeUwTfbsHpfCtcfStdRawRep1 HPF CTCF Sg 1 bigWig 1.000000 12089.000000 HPF CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 284 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPF CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HPF CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HPF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHpfCtcfStdRawRep1\ type bigWig 1.000000 12089.000000\ wgEncodeBroadHistoneHuvecH3k4me3StdSig HUVEC H3K4m3 bigWig 0.040000 8289.919922 HUVEC H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 284 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HUVEC H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k4me3StdSig\ type bigWig 0.040000 8289.919922\ wgEncodeSydhTfbsK562Pol2StdSig K562 Pol2 Std bigWig 0.000000 33625.500000 K562 Pol2 Standard ChIP-seq Signal from ENCODE/SYDH 2 284 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Pol2 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal on\ shortLabel K562 Pol2 Std\ subGroups view=Signal factor=POL2 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Pol2StdSig\ type bigWig 0.000000 33625.500000\ wgEncodeAwgTfbsHaibK562Thap1sc98174V0416101UniPk K562 THAP1 narrowPeak K562 TFBS Uniform Peaks of THAP1_(SC-98174) from ENCODE/HudsonAlpha/Analysis 1 284 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of THAP1_(SC-98174) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 THAP1\ subGroups tier=a10 cellType=a10K562 factor=THAP1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Thap1sc98174V0416101UniPk\ wgEncodeRikenCageSknshCellPapTssHmm SKSH cell pA+ bed 6 SK-N-SH whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 284 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel SKSH cell pA+\ subGroups view=TssHmm cellType=t2SKNSH localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageSknshCellPapTssHmm\ type bed 6\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_ctss_rev Tc:ARPE-19Emt_00hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_reverse 0 284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep3.CNhs14471.13633-146I6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13633-146I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_tpm_rev Tc:ARPE-19Emt_00hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_reverse 1 284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep3.CNhs14471.13633-146I6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13633-146I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseUrothelSigV2 Urothel DS bigWig 0.000000 0.874300 Urothelia DNaseI HS Density Signal from ENCODE/Duke 2 284 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Urothelia DNaseI HS Density Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSignal off\ shortLabel Urothel DS\ subGroups view=SIG cellType=t3UROTHELIA treatment=zNONE\ track wgEncodeOpenChromDnaseUrothelSigV2\ type bigWig 0.000000 0.874300\ wgEncodeCshlShortRnaSeqAg04450CellShorttotalTapMinusRawRep1 AG50 cell TAP - 1 bigWig 1.000000 1741127.000000 AG04450 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 285 0 0 0 127 127 127 0 0 0 expression 0 longLabel AG04450 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel AG50 cell TAP - 1\ subGroups view=MinusSignal cellType=t3AG04450 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqAg04450CellShorttotalTapMinusRawRep1\ type bigWig 1.000000 1741127.000000\ encTfChipPkENCFF317TBZ H1-hESC SP1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in H1-hESC from ENCODE 3 (ENCFF317TBZ) 1 285 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of SP1 in H1-hESC from ENCODE 3 (ENCFF317TBZ)\ parent encTfChipPk off\ shortLabel H1-hESC SP1\ subGroups cellType=H1-hESC factor=SP1\ track encTfChipPkENCFF317TBZ\ wgEncodeUwHistoneH7esH3k04me3StdDiffa14dHotspotsRep2 H7ES H3K4M3 Ht 2 broadPeak H7-hESC H3K4me3 diffProtA 14 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 285 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 diffProtA 14 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep2\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa14dHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseHeeRawRep1 HEEpiC Sg 1 bigWig 1.000000 48631.000000 HEEpiC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 285 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEEpiC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HEEpiC Sg 1\ subGroups view=zRSig cellType=t3HEEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHeeRawRep1\ type bigWig 1.000000 48631.000000\ wgEncodeCshlLongRnaSeqHepg2NucleusLongnonpolyaAlnRep1 HeG2 nuc pA- A 1 bam HepG2 nucleus polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 285 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleus polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeG2 nuc pA- A 1\ subGroups view=Alignments cellType=t2HEPG2 localization=NUCLEUS rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2NucleusLongnonpolyaAlnRep1\ type bam\ wgEncodeHaibTfbsH1hescSin3ak20Pcr1xPkRep2 hESC Sin3A PCR1 2 broadPeak H1-hESC Sin3Ak-20 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 285 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC Sin3Ak-20 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC Sin3A PCR1 2\ subGroups view=Peaks factor=SIN3AK20 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescSin3ak20Pcr1xPkRep2\ type broadPeak\ wgEncodeUwTfbsHpfCtcfStdHotspotsRep2 HPF CTCF Ht 2 broadPeak HPF CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 285 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPF CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HPF CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3HPF rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHpfCtcfStdHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneHuvecH3k9acStdPk HUVEC H3K9ac broadPeak HUVEC H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 285 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HUVEC H3K9ac\ subGroups view=Peaks factor=H3K09AC cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k9acStdPk\ type broadPeak\ wgEncodeSydhTfbsK562Pol2s2IggrabPk K562 PolS IgR narrowPeak K562 Pol2 S2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 285 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Pol2 S2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 PolS IgR\ subGroups view=Peaks factor=POL2S2 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Pol2s2IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsHaibK562Trim28sc81411V0422111UniPk K562 TRIM28 narrowPeak K562 TFBS Uniform Peaks of TRIM28_(SC-81411) from ENCODE/HudsonAlpha/Analysis 1 285 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of TRIM28_(SC-81411) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 TRIM28\ subGroups tier=a10 cellType=a10K562 factor=TRIM28 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Trim28sc81411V0422111UniPk\ wgEncodeRikenCageSknshCellPapPlusRawRep3 SKSH cell pA+ + 3 bigWig 1.000000 887052.000000 SK-N-SH whole cell polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN 2 285 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH whole cell polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel SKSH cell pA+ + 3\ subGroups view=PlusRawSignal cellType=t2SKNSH localization=wcell rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageSknshCellPapPlusRawRep3\ type bigWig 1.000000 887052.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_ctss_fwd Tc:ARPE-19Emt_00hr45minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_forward 0 285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep1.CNhs14472.13634-146I7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13634-146I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_tpm_fwd Tc:ARPE-19Emt_00hr45minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_forward 1 285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep1.CNhs14472.13634-146I7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13634-146I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7\ urlLabel FANTOM5 Details:\ wgEncodeOpenChromDnaseUrothelBaseOverlapSignalV2 Urothel OS bigWig 0.000000 209.000000 Urothelia DNaseI HS Overlap Signal from ENCODE/Duke 2 285 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Urothelia DNaseI HS Overlap Signal from ENCODE/Duke\ parent wgEncodeOpenChromDnaseViewSigBo off\ shortLabel Urothel OS\ subGroups view=SIGBO cellType=t3UROTHELIA treatment=zNONE\ track wgEncodeOpenChromDnaseUrothelBaseOverlapSignalV2\ type bigWig 0.000000 209.000000\ wgEncodeCshlShortRnaSeqAg04450CellShorttotalTapMinusRawRep2 AG50 cell TAP - 2 bigWig 1.000000 2108017.000000 AG04450 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 286 0 0 0 127 127 127 0 0 0 expression 0 longLabel AG04450 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel AG50 cell TAP - 2\ subGroups view=MinusSignal cellType=t3AG04450 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqAg04450CellShorttotalTapMinusRawRep2\ type bigWig 1.000000 2108017.000000\ encTfChipPkENCFF725LDD H1-hESC SRF narrowPeak Transcription Factor ChIP-seq Peaks of SRF in H1-hESC from ENCODE 3 (ENCFF725LDD) 1 286 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of SRF in H1-hESC from ENCODE 3 (ENCFF725LDD)\ parent encTfChipPk off\ shortLabel H1-hESC SRF\ subGroups cellType=H1-hESC factor=SRF\ track encTfChipPkENCFF725LDD\ wgEncodeUwHistoneH7esH3k04me3StdDiffa14dPkRep2 H7ES H3K4M3 Pk 2 narrowPeak H7-hESC H3K4me3 diffProtA 14 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 286 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 diffProtA 14 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep2\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa14dPkRep2\ type narrowPeak\ wgEncodeUwDnaseHeeHotspotsRep2 HEEpiC Ht 2 broadPeak HEEpiC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 286 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpiC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HEEpiC Ht 2\ subGroups view=Hot cellType=t3HEEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHeeHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHepg2NucleusLongnonpolyaAlnRep2 HeG2 nuc pA- A 2 bam HepG2 nucleus polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 286 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleus polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeG2 nuc pA- A 2\ subGroups view=Alignments cellType=t2HEPG2 localization=NUCLEUS rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2NucleusLongnonpolyaAlnRep2\ type bam\ wgEncodeHaibTfbsH1hescSin3ak20Pcr1xRawRep2 hESC Sin3A PCR1 2 bigWig 0.245489 212.654999 H1-hESC Sin3Ak-20 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 286 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Sin3Ak-20 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC Sin3A PCR1 2\ subGroups view=RawSignal factor=SIN3AK20 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescSin3ak20Pcr1xRawRep2\ type bigWig 0.245489 212.654999\ wgEncodeUwTfbsHpfCtcfStdPkRep2 HPF CTCF Pk 2 narrowPeak HPF CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 286 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPF CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HPF CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3HPF rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHpfCtcfStdPkRep2\ type narrowPeak\ wgEncodeBroadHistoneHuvecH3k9acStdSig HUVEC H3K9ac bigWig 0.040000 3125.959961 HUVEC H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 286 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HUVEC H3K9ac\ subGroups view=Signal factor=H3K09AC cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k9acStdSig\ type bigWig 0.040000 3125.959961\ wgEncodeSydhTfbsK562Pol2s2IggrabSig K562 PolS IgR bigWig 1.000000 7989.000000 K562 Pol2 S2 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 286 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Pol2 S2 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 PolS IgR\ subGroups view=Signal factor=POL2S2 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Pol2s2IggrabSig\ type bigWig 1.000000 7989.000000\ wgEncodeAwgTfbsSydhK562Ubfsc13125IggmusUniPk K562 UBTF s narrowPeak K562 TFBS Uniform Peaks of UBF_(sc-13125) from ENCODE/Stanford/Analysis 1 286 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of UBF_(sc-13125) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 UBTF s\ subGroups tier=a10 cellType=a10K562 factor=UBTF lab=Stanford\ track wgEncodeAwgTfbsSydhK562Ubfsc13125IggmusUniPk\ wgEncodeRikenCageSknshCellPapPlusRawRep4 SKSH cell pA+ + 4 bigWig 1.000000 587460.000000 SK-N-SH whole cell polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN 2 286 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH whole cell polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel SKSH cell pA+ + 4\ subGroups view=PlusRawSignal cellType=t2SKNSH localization=wcell rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageSknshCellPapPlusRawRep4\ type bigWig 1.000000 587460.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_ctss_rev Tc:ARPE-19Emt_00hr45minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_reverse 0 286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep1.CNhs14472.13634-146I7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13634-146I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_tpm_rev Tc:ARPE-19Emt_00hr45minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_reverse 1 286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep1.CNhs14472.13634-146I7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13634-146I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqAg04450CellShorttotalTapPlusRawRep1 AG50 cell TAP + 1 bigWig 1.000000 4359540.000000 AG04450 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 287 0 0 0 127 127 127 0 0 0 expression 0 longLabel AG04450 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel AG50 cell TAP + 1\ subGroups view=PlusSignal cellType=t3AG04450 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqAg04450CellShorttotalTapPlusRawRep1\ type bigWig 1.000000 4359540.000000\ encTfChipPkENCFF336HCY H1-hESC SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in H1-hESC from ENCODE 3 (ENCFF336HCY) 1 287 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in H1-hESC from ENCODE 3 (ENCFF336HCY)\ parent encTfChipPk off\ shortLabel H1-hESC SUZ12\ subGroups cellType=H1-hESC factor=SUZ12\ track encTfChipPkENCFF336HCY\ wgEncodeUwHistoneH7esH3k04me3StdDiffa14dRawRep2 H7ES H3K4M3 Sg 2 bigWig 1.000000 4069.000000 H7-hESC H3K4me3 diffProtA 14 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 287 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K4me3 diffProtA 14 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep2\ track wgEncodeUwHistoneH7esH3k04me3StdDiffa14dRawRep2\ type bigWig 1.000000 4069.000000\ wgEncodeUwDnaseHeePkRep2 HEEpiC Pk 2 narrowPeak HEEpiC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 287 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpiC DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HEEpiC Pk 2\ subGroups view=Peaks cellType=t3HEEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHeePkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHepg2NucleusPamContigs HeG2 nuc pA- C bed 6 + HepG2 nucleus polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 287 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleus polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HeG2 nuc pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HEPG2 localization=NUCLEUS rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqHepg2NucleusPamContigs\ type bed 6 +\ wgEncodeHaibTfbsH1hescSix5Pcr1xPkRep1 hESC SIX5 PCR1 1 broadPeak H1-hESC SIX5 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 287 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC SIX5 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC SIX5 PCR1 1\ subGroups view=Peaks factor=SIX5 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescSix5Pcr1xPkRep1\ type broadPeak\ wgEncodeUwTfbsHpfCtcfStdRawRep2 HPF CTCF Sg 2 bigWig 1.000000 17174.000000 HPF CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 287 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPF CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HPF CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3HPF rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHpfCtcfStdRawRep2\ type bigWig 1.000000 17174.000000\ wgEncodeBroadHistoneHuvecH3k09me3Pk HUVEC H3K9m3 broadPeak HUVEC H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 287 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HUVEC H3K9m3\ subGroups view=Peaks factor=H3K09ME3 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k09me3Pk\ type broadPeak\ wgEncodeSydhTfbsK562Pol2s2StdPk K562 PolS Std narrowPeak K562 Pol2 S2 Standard ChIP-seq Peaks from ENCODE/SYDH 3 287 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Pol2 S2 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 PolS Std\ subGroups view=Peaks factor=POL2S2 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Pol2s2StdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Ubtfsab1404509IggmusUniPk K562 UBTF s2 narrowPeak K562 TFBS Uniform Peaks of UBTF_(SAB1404509) from ENCODE/Stanford/Analysis 1 287 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of UBTF_(SAB1404509) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 UBTF s2\ subGroups tier=a10 cellType=a10K562 factor=UBTF lab=Stanford\ track wgEncodeAwgTfbsSydhK562Ubtfsab1404509IggmusUniPk\ wgEncodeRikenCageSknshCellPapMinusRawRep3 SKSH cell pA+ - 3 bigWig 1.000000 613972.000000 SK-N-SH whole cell polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN 2 287 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH whole cell polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel SKSH cell pA+ - 3\ subGroups view=MinusRawSignal cellType=t2SKNSH localization=wcell rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageSknshCellPapMinusRawRep3\ type bigWig 1.000000 613972.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_ctss_fwd Tc:ARPE-19Emt_00hr45minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_forward 0 287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep2.CNhs14473.13635-146I8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13635-146I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_tpm_fwd Tc:ARPE-19Emt_00hr45minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_forward 1 287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep2.CNhs14473.13635-146I8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13635-146I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqAg04450CellShorttotalTapPlusRawRep2 AG50 cell TAP + 2 bigWig 1.000000 3606106.000000 AG04450 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 288 0 0 0 127 127 127 0 0 0 expression 0 longLabel AG04450 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel AG50 cell TAP + 2\ subGroups view=PlusSignal cellType=t3AG04450 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqAg04450CellShorttotalTapPlusRawRep2\ type bigWig 1.000000 3606106.000000\ encTfChipPkENCFF202SNU H1-hESC TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in H1-hESC from ENCODE 3 (ENCFF202SNU) 1 288 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of TAF1 in H1-hESC from ENCODE 3 (ENCFF202SNU)\ parent encTfChipPk off\ shortLabel H1-hESC TAF1\ subGroups cellType=H1-hESC factor=TAF1\ track encTfChipPkENCFF202SNU\ wgEncodeUwHistoneH7esH3k4me3StdHotspotsRep1 H7ES H3K4M3 Ht 1 broadPeak H7-hESC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 288 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3H7HESC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneH7esH3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseHeeRawRep2 HEEpiC Sg 2 bigWig 1.000000 41063.000000 HEEpiC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 288 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEEpiC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HEEpiC Sg 2\ subGroups view=zRSig cellType=t3HEEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHeeRawRep2\ type bigWig 1.000000 41063.000000\ wgEncodeCshlLongRnaSeqHepg2NucleusPamJunctions HeG2 nuc pA- J bed 6 + HepG2 nucleus polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 288 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleus polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HeG2 nuc pA- J\ subGroups view=Junctions cellType=t2HEPG2 localization=NUCLEUS rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHepg2NucleusPamJunctions\ type bed 6 +\ wgEncodeHaibTfbsH1hescSix5Pcr1xRawRep1 hESC SIX5 PCR1 1 bigWig 0.300386 247.518005 H1-hESC SIX5 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 288 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC SIX5 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC SIX5 PCR1 1\ subGroups view=RawSignal factor=SIX5 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescSix5Pcr1xRawRep1\ type bigWig 0.300386 247.518005\ wgEncodeUwTfbsHpfInputStdRawRep1 HPF In Sg 1 bigWig 1.000000 13754.000000 HPF Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 288 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPF Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HPF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HPF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHpfInputStdRawRep1\ type bigWig 1.000000 13754.000000\ wgEncodeBroadHistoneHuvecH3k09me3Sig HUVEC H3K9m3 bigWig 0.040000 101175.281250 HUVEC H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 288 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HUVEC H3K9m3\ subGroups view=Signal factor=H3K09ME3 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k09me3Sig\ type bigWig 0.040000 101175.281250\ wgEncodeSydhTfbsK562Pol2s2StdSig K562 PolS Std bigWig 1.000000 2683.000000 K562 Pol2 S2 Standard ChIP-seq Signal from ENCODE/SYDH 2 288 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Pol2 S2 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 PolS Std\ subGroups view=Signal factor=POL2S2 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Pol2s2StdSig\ type bigWig 1.000000 2683.000000\ wgEncodeAwgTfbsHaibK562Usf1V0416101UniPk K562 USF1 narrowPeak K562 TFBS Uniform Peaks of USF-1 from ENCODE/HudsonAlpha/Analysis 1 288 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of USF-1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 USF1\ subGroups tier=a10 cellType=a10K562 factor=USF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Usf1V0416101UniPk\ wgEncodeRikenCageSknshCellPapMinusRawRep4 SKSH cell pA+ - 4 bigWig 1.000000 472679.000000 SK-N-SH whole cell polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN 2 288 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH whole cell polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel SKSH cell pA+ - 4\ subGroups view=MinusRawSignal cellType=t2SKNSH localization=wcell rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageSknshCellPapMinusRawRep4\ type bigWig 1.000000 472679.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_ctss_rev Tc:ARPE-19Emt_00hr45minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_reverse 0 288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep2.CNhs14473.13635-146I8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13635-146I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_tpm_rev Tc:ARPE-19Emt_00hr45minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_reverse 1 288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep2.CNhs14473.13635-146I8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13635-146I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqBjCellShorttotalTapContigs BJ cell TAP C bed 6 BJ TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 289 0 0 0 127 127 127 0 0 0 expression 1 longLabel BJ TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel BJ cell TAP C\ subGroups view=Contigs cellType=t3BJ localization=CELL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqBjCellShorttotalTapContigs\ type bed 6\ encTfChipPkENCFF963TZI H1-hESC TAF7 narrowPeak Transcription Factor ChIP-seq Peaks of TAF7 in H1-hESC from ENCODE 3 (ENCFF963TZI) 1 289 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of TAF7 in H1-hESC from ENCODE 3 (ENCFF963TZI)\ parent encTfChipPk off\ shortLabel H1-hESC TAF7\ subGroups cellType=H1-hESC factor=TAF7\ track encTfChipPkENCFF963TZI\ wgEncodeUwHistoneH7esH3k4me3StdPkRep1 H7ES H3K4M3 Pk 1 narrowPeak H7-hESC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 289 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3H7HESC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneH7esH3k4me3StdPkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHepg2NucleusLongnonpolyaMinusRawSigRep1 HeG2 nuc pA- - 1 bigWig 1.000000 6208901.000000 HepG2 nucleus polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 289 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleus polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeG2 nuc pA- - 1\ subGroups view=MinusSignal cellType=t2HEPG2 localization=NUCLEUS rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2NucleusLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 6208901.000000\ wgEncodeHaibTfbsH1hescSix5Pcr1xPkRep2 hESC SIX5 PCR1 2 broadPeak H1-hESC SIX5 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 289 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC SIX5 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC SIX5 PCR1 2\ subGroups view=Peaks factor=SIX5 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescSix5Pcr1xPkRep2\ type broadPeak\ wgEncodeUwDnaseHffHotspotsRep1 HFF Ht 1 broadPeak HFF DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 289 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HFF Ht 1\ subGroups view=Hot cellType=t3HFF rep=rep1 treatment=None\ track wgEncodeUwDnaseHffHotspotsRep1\ type broadPeak\ wgEncodeUwTfbsHreCtcfStdHotspotsRep1 HRE CTCF Ht 1 broadPeak HRE CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 289 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HRE CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HRE rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHreCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHuvecH3k9me1StdPk HUVEC H3K9m1 broadPeak HUVEC H3K9me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 289 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K9me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HUVEC H3K9m1\ subGroups view=Peaks factor=H3K09me1 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k9me1StdPk\ type broadPeak\ wgEncodeSydhTfbsK562Pol3StdPk K562 Pol3 Std narrowPeak K562 POL3 Standard ChIP-seq Peaks from ENCODE/SYDH 3 289 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 POL3 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 Pol3 Std\ subGroups view=Peaks factor=POL3 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Pol3StdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Usf2IggrabUniPk K562 USF2 narrowPeak K562 TFBS Uniform Peaks of USF2 from ENCODE/Stanford/Analysis 1 289 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of USF2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 USF2\ subGroups tier=a10 cellType=a10K562 factor=USF2 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Usf2IggrabUniPk\ wgEncodeRikenCageSknshCellPapAlnRep3 SKSH cell pA+ A 3 bam SK-N-SH whole cell polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN 0 289 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH whole cell polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel SKSH cell pA+ A 3\ subGroups view=Alignments cellType=t2SKNSH localization=wcell rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageSknshCellPapAlnRep3\ type bam\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_ctss_fwd Tc:ARPE-19Emt_00hr45minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_forward 0 289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep3.CNhs14474.13636-146I9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13636-146I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_tpm_fwd Tc:ARPE-19Emt_00hr45minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_forward 1 289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep3.CNhs14474.13636-146I9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13636-146I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9\ urlLabel FANTOM5 Details:\ wgEncodeCshlShortRnaSeqBjCellShorttotalTapMinusRawRep1 BJ cell TAP - 1 bigWig 1.000000 5947156.000000 BJ TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 290 0 0 0 127 127 127 0 0 0 expression 0 longLabel BJ TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel BJ cell TAP - 1\ subGroups view=MinusSignal cellType=t3BJ localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqBjCellShorttotalTapMinusRawRep1\ type bigWig 1.000000 5947156.000000\ encTfChipPkENCFF629MBV H1-hESC TBP narrowPeak Transcription Factor ChIP-seq Peaks of TBP in H1-hESC from ENCODE 3 (ENCFF629MBV) 1 290 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of TBP in H1-hESC from ENCODE 3 (ENCFF629MBV)\ parent encTfChipPk off\ shortLabel H1-hESC TBP\ subGroups cellType=H1-hESC factor=TBP\ track encTfChipPkENCFF629MBV\ wgEncodeUwHistoneH7esH3k4me3StdRawRep1 H7ES H3K4M3 Sg 1 bigWig 1.000000 1089.000000 H7-hESC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 290 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3H7HESC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneH7esH3k4me3StdRawRep1\ type bigWig 1.000000 1089.000000\ wgEncodeCshlLongRnaSeqHepg2NucleusLongnonpolyaMinusRawSigRep2 HeG2 nuc pA- - 2 bigWig 1.000000 8530886.000000 HepG2 nucleus polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 290 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleus polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeG2 nuc pA- - 2\ subGroups view=MinusSignal cellType=t2HEPG2 localization=NUCLEUS rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2NucleusLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 8530886.000000\ wgEncodeHaibTfbsH1hescSix5Pcr1xRawRep2 hESC SIX5 PCR1 2 bigWig 0.244364 217.973007 H1-hESC SIX5 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 290 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC SIX5 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC SIX5 PCR1 2\ subGroups view=RawSignal factor=SIX5 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescSix5Pcr1xRawRep2\ type bigWig 0.244364 217.973007\ wgEncodeUwDnaseHffPkRep1 HFF Pk 1 narrowPeak HFF DNaseI HS Peaks Rep 1 from ENCODE/UW 1 290 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HFF Pk 1\ subGroups view=Peaks cellType=t3HFF rep=rep1 treatment=None\ track wgEncodeUwDnaseHffPkRep1\ type narrowPeak\ wgEncodeUwTfbsHreCtcfStdPkRep1 HRE CTCF Pk 1 narrowPeak HRE CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 290 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HRE CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HRE rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHreCtcfStdPkRep1\ type narrowPeak\ wgEncodeBroadHistoneHuvecH3k9me1StdSig HUVEC H3K9m1 bigWig 0.040000 6102.680176 HUVEC H3K9me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 290 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H3K9me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HUVEC H3K9m1\ subGroups view=Signal factor=H3K09me1 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k9me1StdSig\ type bigWig 0.040000 6102.680176\ wgEncodeSydhTfbsK562Pol3StdSig K562 Pol3 Std bigWig 0.000000 11418.200195 K562 POL3 Standard ChIP-seq Signal from ENCODE/SYDH 2 290 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 POL3 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 Pol3 Std\ subGroups view=Signal factor=POL3 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Pol3StdSig\ type bigWig 0.000000 11418.200195\ wgEncodeAwgTfbsHaibK562Yy1V0416101UniPk K562 YY1 h narrowPeak K562 TFBS Uniform Peaks of YY1_(SC-281) from ENCODE/HudsonAlpha/Analysis 1 290 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of YY1_(SC-281) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 YY1 h\ subGroups tier=a10 cellType=a10K562 factor=YY1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Yy1V0416101UniPk\ wgEncodeRikenCageSknshCellPapAlnRep4 SKSH cell pA+ A 4 bam SK-N-SH whole cell polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN 0 290 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH whole cell polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel SKSH cell pA+ A 4\ subGroups view=Alignments cellType=t2SKNSH localization=wcell rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageSknshCellPapAlnRep4\ type bam\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_ctss_rev Tc:ARPE-19Emt_00hr45minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_reverse 0 290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep3.CNhs14474.13636-146I9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13636-146I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_tpm_rev Tc:ARPE-19Emt_00hr45minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_reverse 1 290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep3.CNhs14474.13636-146I9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13636-146I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageAg04450CellPapTssHmm AG50 cell pA+ bed 6 AG04450 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 291 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG04450 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel AG50 cell pA+\ subGroups view=TssHmm cellType=t3AG04450 localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageAg04450CellPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqBjCellShorttotalTapMinusRawRep2 BJ cell TAP - 2 bigWig 1.000000 1923500.000000 BJ TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 291 0 0 0 127 127 127 0 0 0 expression 0 longLabel BJ TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel BJ cell TAP - 2\ subGroups view=MinusSignal cellType=t3BJ localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqBjCellShorttotalTapMinusRawRep2\ type bigWig 1.000000 1923500.000000\ encTfChipPkENCFF274AQE H1-hESC TCF12 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in H1-hESC from ENCODE 3 (ENCFF274AQE) 1 291 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in H1-hESC from ENCODE 3 (ENCFF274AQE)\ parent encTfChipPk off\ shortLabel H1-hESC TCF12\ subGroups cellType=H1-hESC factor=TCF12\ track encTfChipPkENCFF274AQE\ wgEncodeUwHistoneH7esH3k4me3StdHotspotsRep2 H7ES H3K4M3 Ht 2 broadPeak H7-hESC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 291 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3H7HESC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneH7esH3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHepg2NucleusLongnonpolyaPlusRawSigRep1 HeG2 nuc pA- + 1 bigWig 1.000000 10273940.000000 HepG2 nucleus polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 291 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleus polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeG2 nuc pA- + 1\ subGroups view=PlusSignal cellType=t2HEPG2 localization=NUCLEUS rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2NucleusLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 10273940.000000\ wgEncodeHaibTfbsH1hescSp1Pcr1xPkRep1 hESC SP1 PCR1 1 broadPeak H1-hESC SP1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 291 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC SP1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC SP1 PCR1 1\ subGroups view=Peaks factor=SP1 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescSp1Pcr1xPkRep1\ type broadPeak\ wgEncodeUwDnaseHffRawRep1 HFF Sg 1 bigWig 1.000000 55112.000000 HFF DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 291 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HFF DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HFF Sg 1\ subGroups view=zRSig cellType=t3HFF rep=rep1 treatment=None\ track wgEncodeUwDnaseHffRawRep1\ type bigWig 1.000000 55112.000000\ wgEncodeUwTfbsHreCtcfStdRawRep1 HRE CTCF Sg 1 bigWig 1.000000 2395.000000 HRE CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 291 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRE CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HRE CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HRE rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHreCtcfStdRawRep1\ type bigWig 1.000000 2395.000000\ wgEncodeBroadHistoneHuvecH3k27acStdPk HUVEC H3K27ac broadPeak HUVEC H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 291 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HUVEC H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k27acStdPk\ type broadPeak\ wgEncodeSydhTfbsK562Rad21StdPk K562 Rad2 Std narrowPeak K562 Rad21 Standard ChIP-seq Peaks from ENCODE/SYDH 3 291 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Rad21 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks on\ shortLabel K562 Rad2 Std\ subGroups view=Peaks factor=RAD21 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Rad21StdPk\ type narrowPeak\ wgEncodeAwgTfbsHaibK562Yy1V0416102UniPk K562 YY1 h2 narrowPeak K562 TFBS Uniform Peaks of YY1 from ENCODE/HudsonAlpha/Analysis 1 291 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of YY1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 YY1 h2\ subGroups tier=a10 cellType=a10K562 factor=YY1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Yy1V0416102UniPk\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_ctss_fwd Tc:ARPE-19Emt_01hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_forward 0 291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep1.CNhs14475.13637-147A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13637-147A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_tpm_fwd Tc:ARPE-19Emt_01hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_forward 1 291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep1.CNhs14475.13637-147A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13637-147A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageAg04450CellPapPlusSignalRep1 AG50 cell pA+ + 1 bigWig 1.000000 193962.000000 AG04450 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 292 0 0 0 127 127 127 0 0 0 expression 0 longLabel AG04450 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel AG50 cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3AG04450 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageAg04450CellPapPlusSignalRep1\ type bigWig 1.000000 193962.000000\ wgEncodeCshlShortRnaSeqBjCellShorttotalTapPlusRawRep1 BJ cell TAP + 1 bigWig 1.000000 3537517.000000 BJ TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 292 0 0 0 127 127 127 0 0 0 expression 0 longLabel BJ TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel BJ cell TAP + 1\ subGroups view=PlusSignal cellType=t3BJ localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqBjCellShorttotalTapPlusRawRep1\ type bigWig 1.000000 3537517.000000\ encTfChipPkENCFF358BEF H1-hESC USF1 narrowPeak Transcription Factor ChIP-seq Peaks of USF1 in H1-hESC from ENCODE 3 (ENCFF358BEF) 1 292 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of USF1 in H1-hESC from ENCODE 3 (ENCFF358BEF)\ parent encTfChipPk off\ shortLabel H1-hESC USF1\ subGroups cellType=H1-hESC factor=USF1\ track encTfChipPkENCFF358BEF\ wgEncodeUwHistoneH7esH3k4me3StdPkRep2 H7ES H3K4M3 Pk 2 narrowPeak H7-hESC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 292 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3H7HESC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneH7esH3k4me3StdPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHepg2NucleusLongnonpolyaPlusRawSigRep2 HeG2 nuc pA- + 2 bigWig 1.000000 7826750.000000 HepG2 nucleus polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 292 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleus polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeG2 nuc pA- + 2\ subGroups view=PlusSignal cellType=t2HEPG2 localization=NUCLEUS rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2NucleusLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 7826750.000000\ wgEncodeHaibTfbsH1hescSp1Pcr1xRawRep1 hESC SP1 PCR1 1 bigWig 0.257320 184.498993 H1-hESC SP1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 292 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC SP1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC SP1 PCR1 1\ subGroups view=RawSignal factor=SP1 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescSp1Pcr1xRawRep1\ type bigWig 0.257320 184.498993\ wgEncodeUwDnaseHffHotspotsRep2 HFF Ht 2 broadPeak HFF DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 292 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HFF Ht 2\ subGroups view=Hot cellType=t3HFF rep=rep2 treatment=None\ track wgEncodeUwDnaseHffHotspotsRep2\ type broadPeak\ wgEncodeUwTfbsHreCtcfStdHotspotsRep2 HRE CTCF Ht 2 broadPeak HRE CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 292 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HRE CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3HRE rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHreCtcfStdHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneHuvecH3k27acStdSig HUVEC H3K27ac bigWig 0.040000 4396.560059 HUVEC H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 292 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HUVEC H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k27acStdSig\ type bigWig 0.040000 4396.560059\ wgEncodeSydhTfbsK562Rad21StdSig K562 Rad2 Std bigWig 0.000000 16210.500000 K562 Rad21 Standard ChIP-seq Signal from ENCODE/SYDH 2 292 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Rad21 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal on\ shortLabel K562 Rad2 Std\ subGroups view=Signal factor=RAD21 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Rad21StdSig\ type bigWig 0.000000 16210.500000\ wgEncodeAwgTfbsSydhK562Yy1UcdUniPk K562 YY1 c narrowPeak K562 TFBS Uniform Peaks of YY1 from ENCODE/USC/Analysis 1 292 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of YY1 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 YY1 c\ subGroups tier=a10 cellType=a10K562 factor=YY1 lab=USC\ track wgEncodeAwgTfbsSydhK562Yy1UcdUniPk\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_ctss_rev Tc:ARPE-19Emt_01hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_reverse 0 292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep1.CNhs14475.13637-147A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13637-147A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_tpm_rev Tc:ARPE-19Emt_01hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_reverse 1 292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep1.CNhs14475.13637-147A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13637-147A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageAg04450CellPapPlusSignalRep2 AG50 cell pA+ + 2 bigWig 1.000000 168679.000000 AG04450 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 293 0 0 0 127 127 127 0 0 0 expression 0 longLabel AG04450 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel AG50 cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3AG04450 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageAg04450CellPapPlusSignalRep2\ type bigWig 1.000000 168679.000000\ wgEncodeCshlShortRnaSeqBjCellShorttotalTapPlusRawRep2 BJ cell TAP + 2 bigWig 1.000000 6896581.000000 BJ TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 293 0 0 0 127 127 127 0 0 0 expression 0 longLabel BJ TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel BJ cell TAP + 2\ subGroups view=PlusSignal cellType=t3BJ localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqBjCellShorttotalTapPlusRawRep2\ type bigWig 1.000000 6896581.000000\ encTfChipPkENCFF749OBU H1-hESC USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in H1-hESC from ENCODE 3 (ENCFF749OBU) 1 293 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of USF2 in H1-hESC from ENCODE 3 (ENCFF749OBU)\ parent encTfChipPk off\ shortLabel H1-hESC USF2\ subGroups cellType=H1-hESC factor=USF2\ track encTfChipPkENCFF749OBU\ wgEncodeUwHistoneH7esH3k4me3StdRawRep2 H7ES H3K4M3 Sg 2 bigWig 1.000000 2759.000000 H7-hESC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 293 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3H7HESC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneH7esH3k4me3StdRawRep2\ type bigWig 1.000000 2759.000000\ wgEncodeCshlLongRnaSeqHepg2NucleusPapAlnRep1 HeG2 nuc pA+ A 1 bam HepG2 nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 293 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeG2 nuc pA+ A 1\ subGroups view=Alignments cellType=t2HEPG2 localization=NUCLEUS rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2NucleusPapAlnRep1\ type bam\ wgEncodeHaibTfbsH1hescSp1Pcr1xPkRep2 hESC SP1 PCR1 2 broadPeak H1-hESC SP1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 293 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC SP1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC SP1 PCR1 2\ subGroups view=Peaks factor=SP1 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescSp1Pcr1xPkRep2\ type broadPeak\ wgEncodeUwDnaseHffPkRep2 HFF Pk 2 narrowPeak HFF DNaseI HS Peaks Rep 2 from ENCODE/UW 1 293 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HFF Pk 2\ subGroups view=Peaks cellType=t3HFF rep=rep2 treatment=None\ track wgEncodeUwDnaseHffPkRep2\ type narrowPeak\ wgEncodeUwTfbsHreCtcfStdPkRep2 HRE CTCF Pk 2 narrowPeak HRE CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 293 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HRE CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3HRE rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHreCtcfStdPkRep2\ type narrowPeak\ wgEncodeBroadHistoneHuvecH3k27me3StdPk HUVEC H3K27m3 broadPeak HUVEC H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 293 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HUVEC H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k27me3StdPk\ type broadPeak\ wgEncodeSydhTfbsK562Rfx5IggrabPk K562 RFX5 IgR narrowPeak K562 RFX5 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 293 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 RFX5 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 RFX5 IgR\ subGroups view=Peaks factor=RFX5200401194 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Rfx5IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsHaibK562Zbtb33Pcr1xUniPk K562 ZBTB33 narrowPeak K562 TFBS Uniform Peaks of ZBTB33 from ENCODE/HudsonAlpha/Analysis 1 293 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of ZBTB33 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 ZBTB33\ subGroups tier=a10 cellType=a10K562 factor=ZBTB33 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Zbtb33Pcr1xUniPk\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_ctss_fwd Tc:ARPE-19Emt_01hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_forward 0 293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep2.CNhs14476.13638-147A2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13638-147A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_tpm_fwd Tc:ARPE-19Emt_01hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_forward 1 293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep2.CNhs14476.13638-147A2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13638-147A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageAg04450CellPapMinusSignalRep1 AG50 cell pA+ - 1 bigWig 1.000000 201709.000000 AG04450 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 294 0 0 0 127 127 127 0 0 0 expression 0 longLabel AG04450 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel AG50 cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3AG04450 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageAg04450CellPapMinusSignalRep1\ type bigWig 1.000000 201709.000000\ wgEncodeCshlShortRnaSeqCd34mobilizedCellTapContigs CD34 cell TAP C bed 6 CD34+ TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 294 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD34+ TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel CD34 cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t3CD34MOBILIZED localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqCd34mobilizedCellTapContigs\ type bed 6\ encTfChipPkENCFF686VJY H1-hESC YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in H1-hESC from ENCODE 3 (ENCFF686VJY) 1 294 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in H1-hESC from ENCODE 3 (ENCFF686VJY)\ parent encTfChipPk on\ shortLabel H1-hESC YY1\ subGroups cellType=H1-hESC factor=YY1\ track encTfChipPkENCFF686VJY\ wgEncodeUwHistoneH7esH3k27me3StdDiffa2dHotspotsRep1 H7ES H3K27M3 Ht 1 broadPeak H7-hESC H3K27me3 diffProtA 2 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 294 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 diffProtA 2 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep1\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa2dHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHepg2NucleusPapAlnRep2 HeG2 nuc pA+ A 2 bam HepG2 nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 294 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HeG2 nuc pA+ A 2\ subGroups view=Alignments cellType=t2HEPG2 localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2NucleusPapAlnRep2\ type bam\ wgEncodeHaibTfbsH1hescSp1Pcr1xRawRep2 hESC SP1 PCR1 2 bigWig 0.265286 190.673996 H1-hESC SP1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 294 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC SP1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC SP1 PCR1 2\ subGroups view=RawSignal factor=SP1 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescSp1Pcr1xRawRep2\ type bigWig 0.265286 190.673996\ wgEncodeUwDnaseHffRawRep2 HFF Sg 2 bigWig 1.000000 26339.000000 HFF DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 294 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HFF DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HFF Sg 2\ subGroups view=zRSig cellType=t3HFF rep=rep2 treatment=None\ track wgEncodeUwDnaseHffRawRep2\ type bigWig 1.000000 26339.000000\ wgEncodeUwTfbsHreCtcfStdRawRep2 HRE CTCF Sg 2 bigWig 1.000000 4640.000000 HRE CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 294 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRE CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HRE CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3HRE rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHreCtcfStdRawRep2\ type bigWig 1.000000 4640.000000\ wgEncodeBroadHistoneHuvecH3k27me3StdSig HUVEC H3K27m3 bigWig 0.040000 6214.319824 HUVEC H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 294 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HUVEC H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k27me3StdSig\ type bigWig 0.040000 6214.319824\ wgEncodeSydhTfbsK562Rfx5IggrabSig K562 RFX5 IgR bigWig 1.000000 18618.000000 K562 RFX5 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 294 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 RFX5 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 RFX5 IgR\ subGroups view=Signal factor=RFX5200401194 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Rfx5IggrabSig\ type bigWig 1.000000 18618.000000\ wgEncodeAwgTfbsHaibK562Zbtb7asc34508V0416101UniPk K562 ZBTB7A narrowPeak K562 TFBS Uniform Peaks of ZBTB7A_(SC-34508) from ENCODE/HudsonAlpha/Analysis 1 294 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of ZBTB7A_(SC-34508) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 ZBTB7A\ subGroups tier=a10 cellType=a10K562 factor=ZBTB7A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibK562Zbtb7asc34508V0416101UniPk\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_ctss_rev Tc:ARPE-19Emt_01hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_reverse 0 294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep2.CNhs14476.13638-147A2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13638-147A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_tpm_rev Tc:ARPE-19Emt_01hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_reverse 1 294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep2.CNhs14476.13638-147A2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13638-147A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageAg04450CellPapMinusSignalRep2 AG50 cell pA+ - 2 bigWig 1.000000 144192.000000 AG04450 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 295 0 0 0 127 127 127 0 0 0 expression 0 longLabel AG04450 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel AG50 cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3AG04450 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageAg04450CellPapMinusSignalRep2\ type bigWig 1.000000 144192.000000\ wgEncodeCshlShortRnaSeqCd34mobilizedCellTapMinusRep1 CD34 cell TAP - 1 bigWig 1.000000 16845334.000000 CD34+ TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 295 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD34+ TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel CD34 cell TAP - 1\ subGroups view=MinusSignal cellType=t3CD34MOBILIZED localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqCd34mobilizedCellTapMinusRep1\ type bigWig 1.000000 16845334.000000\ encTfChipPkENCFF964BYN H1-hESC ZNF143 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF143 in H1-hESC from ENCODE 3 (ENCFF964BYN) 1 295 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel Transcription Factor ChIP-seq Peaks of ZNF143 in H1-hESC from ENCODE 3 (ENCFF964BYN)\ parent encTfChipPk off\ shortLabel H1-hESC ZNF143\ subGroups cellType=H1-hESC factor=ZNF143\ track encTfChipPkENCFF964BYN\ wgEncodeUwHistoneH7esH3k27me3StdDiffa2dPkRep1 H7ES H3K27M3 Pk 1 narrowPeak H7-hESC H3K27me3 diffProtA 2 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 295 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 diffProtA 2 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep1\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa2dPkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHepg2NucleusPapContigs HeG2 nuc pA+ C bed 6 + HepG2 nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 295 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HeG2 nuc pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HEPG2 localization=NUCLEUS rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqHepg2NucleusPapContigs\ type bed 6 +\ wgEncodeHaibTfbsH1hescSp2V0422111PkRep1 hESC SP2 V11 1 broadPeak H1-hESC SP2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 295 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC SP2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC SP2 V11 1\ subGroups view=Peaks factor=SP2SC643 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescSp2V0422111PkRep1\ type broadPeak\ wgEncodeUwDnaseHffmycHotspotsRep1 HFFMyc Ht 1 broadPeak HFF-Myc DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 295 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF-Myc DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HFFMyc Ht 1\ subGroups view=Hot cellType=t3HFFMYC rep=rep1 treatment=None\ track wgEncodeUwDnaseHffmycHotspotsRep1\ type broadPeak\ wgEncodeUwTfbsHreInputStdRawRep1 HRE In Sg 1 bigWig 1.000000 7076.000000 HRE Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 295 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRE Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HRE In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HRE rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHreInputStdRawRep1\ type bigWig 1.000000 7076.000000\ wgEncodeBroadHistoneHuvecH3k36me3StdPk HUVEC H3K36m3 broadPeak HUVEC H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 295 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HUVEC H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k36me3StdPk\ type broadPeak\ wgEncodeSydhTfbsK562Rpc155StdPk K562 RPC1 Std narrowPeak K562 RPC155 Standard ChIP-seq Peaks from ENCODE/SYDH 3 295 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 RPC155 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 RPC1 Std\ subGroups view=Peaks factor=RPC155 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Rpc155StdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Znf143IggrabUniPk K562 ZNF143 narrowPeak K562 TFBS Uniform Peaks of Znf143_(16618-1-AP) from ENCODE/Stanford/Analysis 1 295 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of Znf143_(16618-1-AP) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 ZNF143\ subGroups tier=a10 cellType=a10K562 factor=ZNF143 lab=Stanford\ track wgEncodeAwgTfbsSydhK562Znf143IggrabUniPk\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_ctss_fwd Tc:ARPE-19Emt_01hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_forward 0 295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep3.CNhs14477.13639-147A3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13639-147A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_tpm_fwd Tc:ARPE-19Emt_01hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_forward 1 295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep3.CNhs14477.13639-147A3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13639-147A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageAg04450CellPapAlnRep1 AG50 cell pA+ A 1 bam AG04450 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 296 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG04450 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel AG50 cell pA+ A 1\ subGroups view=Alignments cellType=t3AG04450 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageAg04450CellPapAlnRep1\ type bam\ wgEncodeCshlShortRnaSeqCd34mobilizedCellTapPlusRep1 CD34 cell TAP + 1 bigWig 1.000000 14466668.000000 CD34+ TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 296 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD34+ TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel CD34 cell TAP + 1\ subGroups view=PlusSignal cellType=t3CD34MOBILIZED localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqCd34mobilizedCellTapPlusRep1\ type bigWig 1.000000 14466668.000000\ encTfChipPkENCFF909JAZ H54 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in H54 from ENCODE 3 (ENCFF909JAZ) 1 296 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in H54 from ENCODE 3 (ENCFF909JAZ)\ parent encTfChipPk off\ shortLabel H54 CTCF\ subGroups cellType=H54 factor=CTCF\ track encTfChipPkENCFF909JAZ\ wgEncodeUwHistoneH7esH3k27me3StdDiffa2dRawRep1 H7ES H3K27M3 Sg 1 bigWig 1.000000 5847.000000 H7-hESC H3K27me3 diffProtA 2 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 296 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K27me3 diffProtA 2 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep1\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa2dRawRep1\ type bigWig 1.000000 5847.000000\ wgEncodeCshlLongRnaSeqHepg2NucleusPapJunctions HeG2 nuc pA+ J bed 6 + HepG2 nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 296 189 0 157 222 127 206 0 0 0 expression 1 color 189,0,157\ longLabel HepG2 nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HeG2 nuc pA+ J\ subGroups view=Junctions cellType=t2HEPG2 localization=NUCLEUS rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHepg2NucleusPapJunctions\ type bed 6 +\ wgEncodeHaibTfbsH1hescSp2V0422111RawRep1 hESC SP2 V11 1 bigWig 0.146891 213.798996 H1-hESC SP2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 296 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC SP2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC SP2 V11 1\ subGroups view=RawSignal factor=SP2SC643 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescSp2V0422111RawRep1\ type bigWig 0.146891 213.798996\ wgEncodeUwDnaseHffmycPkRep1 HFFMyc Pk 1 narrowPeak HFF-Myc DNaseI HS Peaks Rep 1 from ENCODE/UW 1 296 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF-Myc DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HFFMyc Pk 1\ subGroups view=Peaks cellType=t3HFFMYC rep=rep1 treatment=None\ track wgEncodeUwDnaseHffmycPkRep1\ type narrowPeak\ wgEncodeUwTfbsHrpeCtcfStdHotspotsRep1 HRpC CTCF Ht 1 broadPeak HRPEpIC CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 296 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRPEpIC CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel HRpC CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HRPEPIC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHrpeCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHuvecH3k36me3StdSig HUVEC H3K36m3 bigWig 0.040000 6577.279785 HUVEC H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 296 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HUVEC H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k36me3StdSig\ type bigWig 0.040000 6577.279785\ wgEncodeSydhTfbsK562Rpc155StdSig K562 RPC1 Std bigWig 0.000000 14042.099609 K562 RPC155 Standard ChIP-seq Signal from ENCODE/SYDH 2 296 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 RPC155 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 RPC1 Std\ subGroups view=Signal factor=RPC155 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Rpc155StdSig\ type bigWig 0.000000 14042.099609\ wgEncodeAwgTfbsSydhK562Znf263UcdUniPk K562 ZNF263 narrowPeak K562 TFBS Uniform Peaks of ZNF263 from ENCODE/USC/Analysis 1 296 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of ZNF263 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 ZNF263\ subGroups tier=a10 cellType=a10K562 factor=ZNF263 lab=USC\ track wgEncodeAwgTfbsSydhK562Znf263UcdUniPk\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_ctss_rev Tc:ARPE-19Emt_01hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_reverse 0 296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep3.CNhs14477.13639-147A3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13639-147A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_tpm_rev Tc:ARPE-19Emt_01hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_reverse 1 296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep3.CNhs14477.13639-147A3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13639-147A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageAg04450CellPapAlnRep2 AG50 cell pA+ A 2 bam AG04450 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 297 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG04450 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel AG50 cell pA+ A 2\ subGroups view=Alignments cellType=t3AG04450 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageAg04450CellPapAlnRep2\ type bam\ wgEncodeCshlShortRnaSeqH1neuronsCellCiptapContigs H1ne cell CIP C bed 6 H1-neurons CIP-TAP whole cell small RNA-seq Contigs from ENCODE/CSHL 2 297 0 0 0 127 127 127 0 0 0 expression 1 longLabel H1-neurons CIP-TAP whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel H1ne cell CIP C\ subGroups view=Contigs cellType=t3H1NEURONS localization=CELL protocol=CIPTAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqH1neuronsCellCiptapContigs\ type bed 6\ wgEncodeUwHistoneH7esH3k27me3StdDiffa2dHotspotsRep2 H7ES H3K27M3 Ht 2 broadPeak H7-hESC H3K27me3 diffProtA 2 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 297 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 diffProtA 2 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K27M3 Ht 2\ subGroups view=Hot factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep2\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa2dHotspotsRep2\ type broadPeak\ encTfChipPkENCFF917ZPO HCT116 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF917ZPO) 1 297 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF917ZPO)\ parent encTfChipPk off\ shortLabel HCT116 CTCF 1\ subGroups cellType=HCT116 factor=CTCF\ track encTfChipPkENCFF917ZPO\ wgEncodeCshlLongRnaSeqHepg2NucleusPapMinusRawSigRep1 HeG2 nuc pA+ - 1 bigWig 1.000000 189313.000000 HepG2 nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 297 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeG2 nuc pA+ - 1\ subGroups view=MinusSignal cellType=t2HEPG2 localization=NUCLEUS rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2NucleusPapMinusRawSigRep1\ type bigWig 1.000000 189313.000000\ wgEncodeHaibTfbsH1hescSp2V0422111PkRep2 hESC SP2 V11 2 broadPeak H1-hESC SP2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 297 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC SP2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC SP2 V11 2\ subGroups view=Peaks factor=SP2SC643 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescSp2V0422111PkRep2\ type broadPeak\ wgEncodeUwDnaseHffmycRawRep1 HFFMyc Sg 1 bigWig 1.000000 73344.000000 HFF-Myc DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 297 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HFF-Myc DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HFFMyc Sg 1\ subGroups view=zRSig cellType=t3HFFMYC rep=rep1 treatment=None\ track wgEncodeUwDnaseHffmycRawRep1\ type bigWig 1.000000 73344.000000\ wgEncodeUwTfbsHrpeCtcfStdPkRep1 HRpC CTCF Pk 1 narrowPeak HRPEpIC CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 297 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRPEpIC CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HRpC CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HRPEPIC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHrpeCtcfStdPkRep1\ type narrowPeak\ wgEncodeBroadHistoneHuvecH3k79me2Pk HUVEC H3K79m2 broadPeak HUVEC H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 297 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HUVEC H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k79me2Pk\ type broadPeak\ wgEncodeSydhTfbsK562Setdb1MnasedUcdPk K562 MNas STDB UC narrowPeak K562 SETDB1 UC Davis MNaseD ChIP-seq Peaks from ENCODE/SYDH 3 297 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 SETDB1 UC Davis MNaseD ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 MNas STDB UC\ subGroups view=Peaks factor=SETDB1 cellType=t1K562 control=UCD treatment=MNaseD\ track wgEncodeSydhTfbsK562Setdb1MnasedUcdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhK562Znf274UcdUniPk K562 ZNF274 c narrowPeak K562 TFBS Uniform Peaks of ZNF274 from ENCODE/USC/Analysis 1 297 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of ZNF274 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 ZNF274 c\ subGroups tier=a10 cellType=a10K562 factor=ZNF274 lab=USC\ track wgEncodeAwgTfbsSydhK562Znf274UcdUniPk\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep1_CNhs14478_ctss_fwd Tc:ARPE-19Emt_01hr20minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep1_CNhs14478_13640-147A4_forward 0 297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13640-147A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep1.CNhs14478.13640-147A4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep1_CNhs14478_13640-147A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13640-147A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep1_CNhs14478_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13640-147A4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep1_CNhs14478_tpm_fwd Tc:ARPE-19Emt_01hr20minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep1_CNhs14478_13640-147A4_forward 1 297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13640-147A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep1.CNhs14478.13640-147A4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep1_CNhs14478_13640-147A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13640-147A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep1_CNhs14478_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13640-147A4\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageBjCellPapTssHmm BJ cell pA+ bed 6 BJ whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 298 0 0 0 127 127 127 0 0 0 expression 1 longLabel BJ whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel BJ cell pA+\ subGroups view=TssHmm cellType=t3BJ localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageBjCellPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqH1neuronsCellCiptapMinusRawRep1 H1ne cell CIP - 1 bigWig 1.000000 40390528.000000 H1-neurons CIP-TAP whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 298 0 0 0 127 127 127 0 0 0 expression 0 longLabel H1-neurons CIP-TAP whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel H1ne cell CIP - 1\ subGroups view=MinusSignal cellType=t3H1NEURONS localization=CELL protocol=CIPTAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqH1neuronsCellCiptapMinusRawRep1\ type bigWig 1.000000 40390528.000000\ wgEncodeUwHistoneH7esH3k27me3StdDiffa2dPkRep2 H7ES H3K27M3 Pk 2 narrowPeak H7-hESC H3K27me3 diffProtA 2 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 298 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 diffProtA 2 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K27M3 Pk 2\ subGroups view=Peaks factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep2\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa2dPkRep2\ type narrowPeak\ encTfChipPkENCFF364QXM HCT116 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF364QXM) 1 298 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF364QXM)\ parent encTfChipPk off\ shortLabel HCT116 CTCF 2\ subGroups cellType=HCT116 factor=CTCF\ track encTfChipPkENCFF364QXM\ wgEncodeCshlLongRnaSeqHepg2NucleusPapMinusRawSigRep2 HeG2 nuc pA+ - 2 bigWig 1.000000 152896.000000 HepG2 nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 298 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HeG2 nuc pA+ - 2\ subGroups view=MinusSignal cellType=t2HEPG2 localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2NucleusPapMinusRawSigRep2\ type bigWig 1.000000 152896.000000\ wgEncodeHaibTfbsH1hescSp2V0422111RawRep2 hESC SP2 V11 2 bigWig 0.157829 285.355011 H1-hESC SP2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 298 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC SP2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC SP2 V11 2\ subGroups view=RawSignal factor=SP2SC643 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescSp2V0422111RawRep2\ type bigWig 0.157829 285.355011\ wgEncodeUwDnaseHffmycHotspotsRep2 HFFMyc Ht 2 broadPeak HFF-Myc DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 298 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF-Myc DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HFFMyc Ht 2\ subGroups view=Hot cellType=t3HFFMYC rep=rep2 treatment=None\ track wgEncodeUwDnaseHffmycHotspotsRep2\ type broadPeak\ wgEncodeUwTfbsHrpeCtcfStdRawRep1 HRpC CTCF Sg 1 bigWig 1.000000 14608.000000 HRPEpIC CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 298 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRPEpIC CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HRpC CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HRPEPIC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHrpeCtcfStdRawRep1\ type bigWig 1.000000 14608.000000\ wgEncodeBroadHistoneHuvecH3k79me2Sig HUVEC H3K79m2 bigWig 0.040000 5778.879883 HUVEC H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 298 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HUVEC H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH3k79me2Sig\ type bigWig 0.040000 5778.879883\ wgEncodeSydhTfbsK562Setdb1MnasedUcdSig K562 MNas STDB UC bigWig 0.000000 16409.599609 K562 SETDB1 UC Davis MNaseD ChIP-seq Signal from ENCODE/SYDH 2 298 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 SETDB1 UC Davis MNaseD ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 MNas STDB UC\ subGroups view=Signal factor=SETDB1 cellType=t1K562 control=UCD treatment=MNaseD\ track wgEncodeSydhTfbsK562Setdb1MnasedUcdSig\ type bigWig 0.000000 16409.599609\ wgEncodeAwgTfbsSydhK562Znf274m01UcdUniPk K562 ZNF274 c2 narrowPeak K562 TFBS Uniform Peaks of ZNF274_(M01) from ENCODE/USC/Analysis 1 298 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFBS Uniform Peaks of ZNF274_(M01) from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel K562 ZNF274 c2\ subGroups tier=a10 cellType=a10K562 factor=ZNF274 lab=USC\ track wgEncodeAwgTfbsSydhK562Znf274m01UcdUniPk\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep1_CNhs14478_ctss_rev Tc:ARPE-19Emt_01hr20minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep1_CNhs14478_13640-147A4_reverse 0 298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13640-147A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep1.CNhs14478.13640-147A4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep1_CNhs14478_13640-147A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13640-147A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep1_CNhs14478_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13640-147A4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep1_CNhs14478_tpm_rev Tc:ARPE-19Emt_01hr20minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep1_CNhs14478_13640-147A4_reverse 1 298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13640-147A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep1.CNhs14478.13640-147A4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep1_CNhs14478_13640-147A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13640-147A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep1_CNhs14478_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13640-147A4\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageBjCellPapPlusSignalRep1 BJ cell pA+ + 1 bigWig 1.000000 159896.000000 BJ whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 299 0 0 0 127 127 127 0 0 0 expression 0 longLabel BJ whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel BJ cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3BJ localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageBjCellPapPlusSignalRep1\ type bigWig 1.000000 159896.000000\ wgEncodeCshlShortRnaSeqH1neuronsCellCiptapMinusRawRep2 H1ne cell CIP - 2 bigWig 1.000000 26736370.000000 H1-neurons CIP-TAP whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 299 0 0 0 127 127 127 0 0 0 expression 0 longLabel H1-neurons CIP-TAP whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel H1ne cell CIP - 2\ subGroups view=MinusSignal cellType=t3H1NEURONS localization=CELL protocol=CIPTAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqH1neuronsCellCiptapMinusRawRep2\ type bigWig 1.000000 26736370.000000\ wgEncodeUwHistoneH7esH3k27me3StdDiffa2dRawRep2 H7ES H3K27M3 Sg 2 bigWig 1.000000 7398.000000 H7-hESC H3K27me3 diffProtA 2 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 299 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K27me3 diffProtA 2 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K27M3 Sg 2\ subGroups view=zRSig factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep2\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa2dRawRep2\ type bigWig 1.000000 7398.000000\ encTfChipPkENCFF418WAW HCT116 CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF418WAW) 1 299 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF418WAW)\ parent encTfChipPk off\ shortLabel HCT116 CTCF 3\ subGroups cellType=HCT116 factor=CTCF\ track encTfChipPkENCFF418WAW\ wgEncodeCshlLongRnaSeqHepg2NucleusPapPlusRawSigRep1 HeG2 nuc pA+ + 1 bigWig 1.000000 381980.000000 HepG2 nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 299 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeG2 nuc pA+ + 1\ subGroups view=PlusSignal cellType=t2HEPG2 localization=NUCLEUS rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHepg2NucleusPapPlusRawSigRep1\ type bigWig 1.000000 381980.000000\ wgEncodeAwgTfbsSydhHelas3Bdp1UniPk HeLa-S3 BDP1 narrowPeak HeLa-S3 TFBS Uniform Peaks of BDP1 from ENCODE/Harvard/Analysis 1 299 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of BDP1 from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 BDP1\ subGroups tier=a20 cellType=a20HELAS3 factor=BDP1 lab=Harvard\ track wgEncodeAwgTfbsSydhHelas3Bdp1UniPk\ wgEncodeHaibTfbsH1hescSp4v20V0422111PkRep1 hESC SP4 V11 1 broadPeak H1-hESC SP4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 299 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC SP4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC SP4 V11 1\ subGroups view=Peaks factor=SP4V20 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescSp4v20V0422111PkRep1\ type broadPeak\ wgEncodeUwDnaseHffmycPkRep2 HFFMyc Pk 2 narrowPeak HFF-Myc DNaseI HS Peaks Rep 2 from ENCODE/UW 1 299 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF-Myc DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HFFMyc Pk 2\ subGroups view=Peaks cellType=t3HFFMYC rep=rep2 treatment=None\ track wgEncodeUwDnaseHffmycPkRep2\ type narrowPeak\ wgEncodeUwTfbsHrpeCtcfStdHotspotsRep2 HRpC CTCF Ht 2 broadPeak HRPEpIC CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 299 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRPEpIC CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel HRpC CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3HRPEPIC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHrpeCtcfStdHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneHuvecH4k20me1StdPk HUVEC H4K20m1 broadPeak HUVEC H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 299 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HUVEC H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH4k20me1StdPk\ type broadPeak\ wgEncodeSydhTfbsK562Setdb1UcdPk K562 STDB UCD narrowPeak K562 SETDB1 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 299 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 SETDB1 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 STDB UCD\ subGroups view=Peaks factor=SETDB1 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Setdb1UcdPk\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_ctss_fwd Tc:ARPE-19Emt_01hr20minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_forward 0 299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep2.CNhs14479.13641-147A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13641-147A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_tpm_fwd Tc:ARPE-19Emt_01hr20minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_forward 1 299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep2.CNhs14479.13641-147A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13641-147A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageBjCellPapPlusSignalRep2 BJ cell pA+ + 2 bigWig 1.000000 146417.000000 BJ whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 300 0 0 0 127 127 127 0 0 0 expression 0 longLabel BJ whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel BJ cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3BJ localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageBjCellPapPlusSignalRep2\ type bigWig 1.000000 146417.000000\ wgEncodeCshlShortRnaSeqH1neuronsCellCiptapPlusRawRep1 H1ne cell CIP + 1 bigWig 1.000000 7089353.000000 H1-neurons CIP-TAP whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 300 0 0 0 127 127 127 0 0 0 expression 0 longLabel H1-neurons CIP-TAP whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel H1ne cell CIP + 1\ subGroups view=PlusSignal cellType=t3H1NEURONS localization=CELL protocol=CIPTAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqH1neuronsCellCiptapPlusRawRep1\ type bigWig 1.000000 7089353.000000\ wgEncodeUwHistoneH7esH3k27me3StdDiffa5dHotspotsRep1 H7ES H3K27M3 Ht 1 broadPeak H7-hESC H3K27me3 diffProtA 5 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 300 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 diffProtA 5 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep1\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa5dHotspotsRep1\ type broadPeak\ encTfChipPkENCFF769NCM HCT116 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in HCT116 from ENCODE 3 (ENCFF769NCM) 1 300 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in HCT116 from ENCODE 3 (ENCFF769NCM)\ parent encTfChipPk off\ shortLabel HCT116 EZH2\ subGroups cellType=HCT116 factor=EZH2\ track encTfChipPkENCFF769NCM\ wgEncodeCshlLongRnaSeqHepg2NucleusPapPlusRawSigRep2 HeG2 nuc pA+ + 2 bigWig 1.000000 276679.000000 HepG2 nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 300 189 0 157 222 127 206 0 0 0 expression 0 color 189,0,157\ longLabel HepG2 nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HeG2 nuc pA+ + 2\ subGroups view=PlusSignal cellType=t2HEPG2 localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHepg2NucleusPapPlusRawSigRep2\ type bigWig 1.000000 276679.000000\ wgEncodeAwgTfbsSydhHelas3Brca1a300IggrabUniPk HeLa-S3 BRCA1 narrowPeak HeLa-S3 TFBS Uniform Peaks of BRCA1_(A300-000A) from ENCODE/Stanford/Analysis 1 300 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of BRCA1_(A300-000A) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 BRCA1\ subGroups tier=a20 cellType=a20HELAS3 factor=BRCA1 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Brca1a300IggrabUniPk\ wgEncodeHaibTfbsH1hescSp4v20V0422111RawRep1 hESC SP4 V11 1 bigWig 0.173845 333.260986 H1-hESC SP4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 300 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC SP4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC SP4 V11 1\ subGroups view=RawSignal factor=SP4V20 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescSp4v20V0422111RawRep1\ type bigWig 0.173845 333.260986\ wgEncodeUwDnaseHffmycRawRep2 HFFMyc Sg 2 bigWig 1.000000 32670.000000 HFF-Myc DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 300 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HFF-Myc DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HFFMyc Sg 2\ subGroups view=zRSig cellType=t3HFFMYC rep=rep2 treatment=None\ track wgEncodeUwDnaseHffmycRawRep2\ type bigWig 1.000000 32670.000000\ wgEncodeUwTfbsHrpeCtcfStdPkRep2 HRpC CTCF Pk 2 narrowPeak HRPEpIC CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 300 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRPEpIC CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HRpC CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3HRPEPIC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHrpeCtcfStdPkRep2\ type narrowPeak\ wgEncodeBroadHistoneHuvecH4k20me1StdSig HUVEC H4K20m1 bigWig 0.040000 13583.559570 HUVEC H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 300 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HUVEC H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecH4k20me1StdSig\ type bigWig 0.040000 13583.559570\ wgEncodeSydhTfbsK562Setdb1UcdSig K562 STDB UCD bigWig 0.000000 11440.500000 K562 SETDB1 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 300 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 SETDB1 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 STDB UCD\ subGroups view=Signal factor=SETDB1 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Setdb1UcdSig\ type bigWig 0.000000 11440.500000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_ctss_rev Tc:ARPE-19Emt_01hr20minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_reverse 0 300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep2.CNhs14479.13641-147A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13641-147A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_tpm_rev Tc:ARPE-19Emt_01hr20minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_reverse 1 300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep2.CNhs14479.13641-147A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13641-147A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageBjCellPapMinusSignalRep1 BJ cell pA+ - 1 bigWig 1.000000 226750.000000 BJ whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 301 0 0 0 127 127 127 0 0 0 expression 0 longLabel BJ whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel BJ cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3BJ localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageBjCellPapMinusSignalRep1\ type bigWig 1.000000 226750.000000\ wgEncodeCshlShortRnaSeqH1neuronsCellCiptapPlusRawRep2 H1ne cell CIP + 2 bigWig 1.000000 4331571.000000 H1-neurons CIP-TAP whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 301 0 0 0 127 127 127 0 0 0 expression 0 longLabel H1-neurons CIP-TAP whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel H1ne cell CIP + 2\ subGroups view=PlusSignal cellType=t3H1NEURONS localization=CELL protocol=CIPTAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqH1neuronsCellCiptapPlusRawRep2\ type bigWig 1.000000 4331571.000000\ wgEncodeUwHistoneH7esH3k27me3StdDiffa5dPkRep1 H7ES H3K27M3 Pk 1 narrowPeak H7-hESC H3K27me3 diffProtA 5 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 301 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 diffProtA 5 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep1\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa5dPkRep1\ type narrowPeak\ encTfChipPkENCFF088WYS HCT116 JUND narrowPeak Transcription Factor ChIP-seq Peaks of JUND in HCT116 from ENCODE 3 (ENCFF088WYS) 1 301 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUND in HCT116 from ENCODE 3 (ENCFF088WYS)\ parent encTfChipPk off\ shortLabel HCT116 JUND\ subGroups cellType=HCT116 factor=JUND\ track encTfChipPkENCFF088WYS\ wgEncodeAwgTfbsSydhHelas3Brf1UniPk HeLa-S3 BRF1 narrowPeak HeLa-S3 TFBS Uniform Peaks of BRF1 from ENCODE/Harvard/Analysis 1 301 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of BRF1 from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 BRF1\ subGroups tier=a20 cellType=a20HELAS3 factor=BRF1 lab=Harvard\ track wgEncodeAwgTfbsSydhHelas3Brf1UniPk\ wgEncodeHaibTfbsH1hescSp4v20V0422111PkRep2 hESC SP4 V11 2 broadPeak H1-hESC SP4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 301 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC SP4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC SP4 V11 2\ subGroups view=Peaks factor=SP4V20 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescSp4v20V0422111PkRep2\ type broadPeak\ wgEncodeUwDnaseHgfHotspotsRep1 HGF Ht 1 broadPeak HGF DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 301 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HGF DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HGF Ht 1\ subGroups view=Hot cellType=t3HGF rep=rep1 treatment=None\ track wgEncodeUwDnaseHgfHotspotsRep1\ type broadPeak\ wgEncodeUwTfbsHrpeCtcfStdRawRep2 HRpC CTCF Sg 2 bigWig 1.000000 7607.000000 HRPEpIC CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 301 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRPEpIC CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HRpC CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3HRPEPIC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHrpeCtcfStdRawRep2\ type bigWig 1.000000 7607.000000\ wgEncodeCshlLongRnaSeqHuvecCellLongnonpolyaAlnRep1 HUVEC cel pA- A 1 bam HUVEC whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 301 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HUVEC cel pA- A 1\ subGroups view=Alignments cellType=t2HUVEC localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecCellLongnonpolyaAlnRep1\ type bam\ wgEncodeBroadHistoneHuvecPol2bStdPk HUVEC Pol2 broadPeak HUVEC Pol2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 301 224 75 0 239 165 127 1 0 0 regulation 1 color 224,75,0\ longLabel HUVEC Pol2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HUVEC Pol2\ subGroups view=Peaks factor=POL2 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecPol2bStdPk\ type broadPeak\ wgEncodeSydhTfbsK562Sirt6StdPk K562 SIRT Std narrowPeak K562 SIRT6 Standard ChIP-seq Peaks from ENCODE/SYDH 3 301 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 SIRT6 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 SIRT Std\ subGroups view=Peaks factor=SIRT6 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Sirt6StdPk\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_ctss_fwd Tc:ARPE-19Emt_01hr20minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_forward 0 301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep3.CNhs14480.13642-147A6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13642-147A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_tpm_fwd Tc:ARPE-19Emt_01hr20minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_forward 1 301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep3.CNhs14480.13642-147A6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13642-147A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageBjCellPapMinusSignalRep2 BJ cell pA+ - 2 bigWig 1.000000 202847.000000 BJ whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 302 0 0 0 127 127 127 0 0 0 expression 0 longLabel BJ whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel BJ cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3BJ localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageBjCellPapMinusSignalRep2\ type bigWig 1.000000 202847.000000\ wgEncodeCshlShortRnaSeqH1neuronsCellContigs H1ne cell C bed 6 H1-neurons whole cell small RNA-seq Contigs from ENCODE/CSHL 2 302 0 0 0 127 127 127 0 0 0 expression 1 longLabel H1-neurons whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel H1ne cell C\ subGroups view=Contigs cellType=t3H1NEURONS localization=CELL protocol=NONE rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqH1neuronsCellContigs\ type bed 6\ wgEncodeUwHistoneH7esH3k27me3StdDiffa5dRawRep1 H7ES H3K27M3 Sg 1 bigWig 1.000000 4283.000000 H7-hESC H3K27me3 diffProtA 5 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 302 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K27me3 diffProtA 5 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep1\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa5dRawRep1\ type bigWig 1.000000 4283.000000\ encTfChipPkENCFF144BSH HCT116 ZFX narrowPeak Transcription Factor ChIP-seq Peaks of ZFX in HCT116 from ENCODE 3 (ENCFF144BSH) 1 302 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZFX in HCT116 from ENCODE 3 (ENCFF144BSH)\ parent encTfChipPk off\ shortLabel HCT116 ZFX\ subGroups cellType=HCT116 factor=ZFX\ track encTfChipPkENCFF144BSH\ wgEncodeAwgTfbsSydhHelas3Brf2UniPk HeLa-S3 BRF2 narrowPeak HeLa-S3 TFBS Uniform Peaks of BRF2 from ENCODE/Harvard/Analysis 1 302 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of BRF2 from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 BRF2\ subGroups tier=a20 cellType=a20HELAS3 factor=BRF2 lab=Harvard\ track wgEncodeAwgTfbsSydhHelas3Brf2UniPk\ wgEncodeHaibTfbsH1hescSp4v20V0422111RawRep2 hESC SP4 V11 2 bigWig 0.180899 381.740997 H1-hESC SP4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 302 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC SP4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC SP4 V11 2\ subGroups view=RawSignal factor=SP4V20 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescSp4v20V0422111RawRep2\ type bigWig 0.180899 381.740997\ wgEncodeUwDnaseHgfPkRep1 HGF Pk 1 narrowPeak HGF DNaseI HS Peaks Rep 1 from ENCODE/UW 1 302 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HGF DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HGF Pk 1\ subGroups view=Peaks cellType=t3HGF rep=rep1 treatment=None\ track wgEncodeUwDnaseHgfPkRep1\ type narrowPeak\ wgEncodeUwTfbsHrpeInputStdRawRep1 HRpC In Sg 1 bigWig 1.000000 11983.000000 HRPEpIC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 302 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRPEpIC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HRpC In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HRPEPIC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHrpeInputStdRawRep1\ type bigWig 1.000000 11983.000000\ wgEncodeCshlLongRnaSeqHuvecCellLongnonpolyaAlnRep2 HUVEC cel pA- A 2 bam HUVEC whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 302 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HUVEC cel pA- A 2\ subGroups view=Alignments cellType=t2HUVEC localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHuvecCellLongnonpolyaAlnRep2\ type bam\ wgEncodeBroadHistoneHuvecPol2bStdSig HUVEC Pol2 bigWig 0.040000 8296.240234 HUVEC Pol2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 302 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Pol2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HUVEC Pol2\ subGroups view=Signal factor=POL2 cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecPol2bStdSig\ type bigWig 0.040000 8296.240234\ wgEncodeSydhTfbsK562Sirt6StdSig K562 SIRT Std bigWig 0.000000 15127.799805 K562 SIRT6 Standard ChIP-seq Signal from ENCODE/SYDH 2 302 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 SIRT6 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 SIRT Std\ subGroups view=Signal factor=SIRT6 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Sirt6StdSig\ type bigWig 0.000000 15127.799805\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_ctss_rev Tc:ARPE-19Emt_01hr20minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_reverse 0 302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep3.CNhs14480.13642-147A6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13642-147A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_tpm_rev Tc:ARPE-19Emt_01hr20minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_reverse 1 302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep3.CNhs14480.13642-147A6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13642-147A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageBjCellPapAlnRep1 BJ cell pA+ A 1 bam BJ whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 303 0 0 0 127 127 127 0 0 0 expression 1 longLabel BJ whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel BJ cell pA+ A 1\ subGroups view=Alignments cellType=t3BJ localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageBjCellPapAlnRep1\ type bam\ wgEncodeCshlShortRnaSeqH1neuronsCellMinusRawRep1 H1ne cell - 1 bigWig 1.000000 3508543.000000 H1-neurons whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 303 0 0 0 127 127 127 0 0 0 expression 0 longLabel H1-neurons whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel H1ne cell - 1\ subGroups view=MinusSignal cellType=t3H1NEURONS localization=CELL protocol=NONE rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqH1neuronsCellMinusRawRep1\ type bigWig 1.000000 3508543.000000\ wgEncodeUwHistoneH7esH3k27me3StdDiffa5dHotspotsRep2 H7ES H3K27M3 Ht 2 broadPeak H7-hESC H3K27me3 diffProtA 5 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 303 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 diffProtA 5 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K27M3 Ht 2\ subGroups view=Hot factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep2\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa5dHotspotsRep2\ type broadPeak\ encTfChipPkENCFF721FYE HEK293 TRIM28 1 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM28 in HEK293 from ENCODE 3 (ENCFF721FYE) 1 303 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TRIM28 in HEK293 from ENCODE 3 (ENCFF721FYE)\ parent encTfChipPk off\ shortLabel HEK293 TRIM28 1\ subGroups cellType=HEK293 factor=TRIM28\ track encTfChipPkENCFF721FYE\ wgEncodeAwgTfbsSydhHelas3CebpbIggrabUniPk HeLa-S3 CEBPB narrowPeak HeLa-S3 TFBS Uniform Peaks of CEBPB from ENCODE/Stanford/Analysis 1 303 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of CEBPB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 CEBPB\ subGroups tier=a20 cellType=a20HELAS3 factor=CEBPB lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3CebpbIggrabUniPk\ wgEncodeHaibTfbsH1hescSrfPcr1xPkRep1 hESC SRF PCR1 1 broadPeak H1-hESC SRF PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 303 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC SRF PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC SRF PCR1 1\ subGroups view=Peaks factor=SRF cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescSrfPcr1xPkRep1\ type broadPeak\ wgEncodeUwDnaseHgfRawRep1 HGF Sg 1 bigWig 1.000000 27318.000000 HGF DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 303 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HGF DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HGF Sg 1\ subGroups view=zRSig cellType=t3HGF rep=rep1 treatment=None\ track wgEncodeUwDnaseHgfRawRep1\ type bigWig 1.000000 27318.000000\ wgEncodeCshlLongRnaSeqHuvecCellPamContigs HUVEC cel pA- C bed 6 + HUVEC whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 303 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HUVEC cel pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HUVEC localization=CELL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqHuvecCellPamContigs\ type bed 6 +\ wgEncodeBroadHistoneHuvecControlStdSig HUVEC Input bigWig 0.040000 13452.160156 HUVEC Input Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 303 224 75 0 239 165 127 1 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Input Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HUVEC Input\ subGroups view=Signal factor=zCTRL cellType=t2HUVEC treatment=zNONE\ track wgEncodeBroadHistoneHuvecControlStdSig\ type bigWig 0.040000 13452.160156\ wgEncodeUwTfbsHvmfCtcfStdHotspotsRep1 HVMF CTCF Ht 1 broadPeak HVMF CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 303 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HVMF CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel HVMF CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3HVMF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHvmfCtcfStdHotspotsRep1\ type broadPeak\ wgEncodeSydhTfbsK562Smc3ab9263IggrabPk K562 SMC3 IgR narrowPeak K562 SMC3 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 303 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 SMC3 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 SMC3 IgR\ subGroups view=Peaks factor=SMC3ab9263 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Smc3ab9263IggrabPk\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_ctss_fwd Tc:ARPE-19Emt_01hr40minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_forward 0 303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep1.CNhs14482.13643-147A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13643-147A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_tpm_fwd Tc:ARPE-19Emt_01hr40minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_forward 1 303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep1.CNhs14482.13643-147A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13643-147A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7\ urlLabel FANTOM5 Details:\ wgEncodeRikenCageBjCellPapAlnRep2 BJ cell pA+ A 2 bam BJ whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 304 0 0 0 127 127 127 0 0 0 expression 1 longLabel BJ whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel BJ cell pA+ A 2\ subGroups view=Alignments cellType=t3BJ localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageBjCellPapAlnRep2\ type bam\ wgEncodeBroadHistoneMonocd14ro1746CtcfPk CD14+ CTCF broadPeak Monocytes CD14+ CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 304 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Monocytes CD14+ CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD14+ CTCF\ subGroups view=Peaks factor=CTCF cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746CtcfPk\ type broadPeak\ wgEncodeCshlShortRnaSeqH1neuronsCellMinusRawRep2 H1ne cell - 2 bigWig 1.000000 5251859.000000 H1-neurons whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 304 0 0 0 127 127 127 0 0 0 expression 0 longLabel H1-neurons whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel H1ne cell - 2\ subGroups view=MinusSignal cellType=t3H1NEURONS localization=CELL protocol=NONE rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqH1neuronsCellMinusRawRep2\ type bigWig 1.000000 5251859.000000\ wgEncodeUwHistoneH7esH3k27me3StdDiffa5dPkRep2 H7ES H3K27M3 Pk 2 narrowPeak H7-hESC H3K27me3 diffProtA 5 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 304 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 diffProtA 5 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K27M3 Pk 2\ subGroups view=Peaks factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep2\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa5dPkRep2\ type narrowPeak\ encTfChipPkENCFF034GYQ HEK293 TRIM28 2 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM28 in HEK293 from ENCODE 3 (ENCFF034GYQ) 1 304 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TRIM28 in HEK293 from ENCODE 3 (ENCFF034GYQ)\ parent encTfChipPk off\ shortLabel HEK293 TRIM28 2\ subGroups cellType=HEK293 factor=TRIM28\ track encTfChipPkENCFF034GYQ\ wgEncodeAwgTfbsSydhHelas3Chd2IggrabUniPk HeLa-S3 CHD2 narrowPeak HeLa-S3 TFBS Uniform Peaks of CHD2_(AB68301) from ENCODE/Stanford/Analysis 1 304 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of CHD2_(AB68301) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 CHD2\ subGroups tier=a20 cellType=a20HELAS3 factor=CHD2 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Chd2IggrabUniPk\ wgEncodeHaibTfbsH1hescSrfPcr1xRawRep1 hESC SRF PCR1 1 bigWig 0.192925 186.317001 H1-hESC SRF PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 304 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC SRF PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC SRF PCR1 1\ subGroups view=RawSignal factor=SRF cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescSrfPcr1xRawRep1\ type bigWig 0.192925 186.317001\ wgEncodeUwDnaseHgfHotspotsRep2 HGF Ht 2 broadPeak HGF DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 304 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HGF DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HGF Ht 2\ subGroups view=Hot cellType=t3HGF rep=rep2 treatment=None\ track wgEncodeUwDnaseHgfHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHuvecCellPamJunctions HUVEC cel pA- J bed 6 + HUVEC whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 304 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HUVEC cel pA- J\ subGroups view=Junctions cellType=t2HUVEC localization=CELL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHuvecCellPamJunctions\ type bed 6 +\ wgEncodeUwTfbsHvmfCtcfStdPkRep1 HVMF CTCF Pk 1 narrowPeak HVMF CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 304 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HVMF CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HVMF CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3HVMF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHvmfCtcfStdPkRep1\ type narrowPeak\ wgEncodeSydhTfbsK562Smc3ab9263IggrabSig K562 SMC3 IgR bigWig 1.000000 8592.000000 K562 SMC3 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 304 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 SMC3 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 SMC3 IgR\ subGroups view=Signal factor=SMC3ab9263 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Smc3ab9263IggrabSig\ type bigWig 1.000000 8592.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_ctss_rev Tc:ARPE-19Emt_01hr40minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_reverse 0 304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep1.CNhs14482.13643-147A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13643-147A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_tpm_rev Tc:ARPE-19Emt_01hr40minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_reverse 1 304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep1.CNhs14482.13643-147A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13643-147A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746CtcfSig CD14+ CTCF bigWig 0.040000 705.440002 Monocytes CD14+ CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 305 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Monocytes CD14+ CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD14+ CTCF\ subGroups view=Signal factor=CTCF cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746CtcfSig\ type bigWig 0.040000 705.440002\ wgEncodeRikenCageCd34mobilizedCellPapTssHmm CD34 cell pA+ bed 6 CD34+ Mobilized whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 305 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD34+ Mobilized whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel CD34 cell pA+\ subGroups view=TssHmm cellType=t3CD34MOBILIZED localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageCd34mobilizedCellPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqH1neuronsCellPlusRawRep1 H1ne cell + 1 bigWig 1.000000 2471484.000000 H1-neurons whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 305 0 0 0 127 127 127 0 0 0 expression 0 longLabel H1-neurons whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel H1ne cell + 1\ subGroups view=PlusSignal cellType=t3H1NEURONS localization=CELL protocol=NONE rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqH1neuronsCellPlusRawRep1\ type bigWig 1.000000 2471484.000000\ wgEncodeUwHistoneH7esH3k27me3StdDiffa5dRawRep2 H7ES H3K27M3 Sg 2 bigWig 1.000000 6454.000000 H7-hESC H3K27me3 diffProtA 5 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 305 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K27me3 diffProtA 5 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K27M3 Sg 2\ subGroups view=zRSig factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep2\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa5dRawRep2\ type bigWig 1.000000 6454.000000\ encTfChipPkENCFF550UEU HEK293T ARNT narrowPeak Transcription Factor ChIP-seq Peaks of ARNT in HEK293T from ENCODE 3 (ENCFF550UEU) 1 305 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ARNT in HEK293T from ENCODE 3 (ENCFF550UEU)\ parent encTfChipPk off\ shortLabel HEK293T ARNT\ subGroups cellType=HEK293T factor=ARNT\ track encTfChipPkENCFF550UEU\ wgEncodeAwgTfbsBroadHelas3CtcfUniPk HeLa-S3 CTCF b narrowPeak HeLa-S3 TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis 1 305 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 CTCF b\ subGroups tier=a20 cellType=a20HELAS3 factor=CTCF lab=Broad\ track wgEncodeAwgTfbsBroadHelas3CtcfUniPk\ wgEncodeHaibTfbsH1hescSrfPcr1xPkRep2 hESC SRF PCR1 2 broadPeak H1-hESC SRF PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 305 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC SRF PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC SRF PCR1 2\ subGroups view=Peaks factor=SRF cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescSrfPcr1xPkRep2\ type broadPeak\ wgEncodeUwDnaseHgfPkRep2 HGF Pk 2 narrowPeak HGF DNaseI HS Peaks Rep 2 from ENCODE/UW 1 305 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HGF DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HGF Pk 2\ subGroups view=Peaks cellType=t3HGF rep=rep2 treatment=None\ track wgEncodeUwDnaseHgfPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHuvecCellLongnonpolyaMinusRawSigRep1 HUVEC cel pA- - 1 bigWig 1.000000 736288.000000 HUVEC whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 305 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HUVEC cel pA- - 1\ subGroups view=MinusSignal cellType=t2HUVEC localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecCellLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 736288.000000\ wgEncodeUwTfbsHvmfCtcfStdRawRep1 HVMF CTCF Sg 1 bigWig 1.000000 8064.000000 HVMF CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 305 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HVMF CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HVMF CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3HVMF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHvmfCtcfStdRawRep1\ type bigWig 1.000000 8064.000000\ wgEncodeSydhTfbsK562Stat1Ifna30StdPk K562 IFa3 STA1 Sd narrowPeak K562 STAT1 Standard IFNa 30min ChIP-seq Peaks from ENCODE/SYDH 3 305 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 STAT1 Standard IFNa 30min ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFa3 STA1 Sd\ subGroups view=Peaks factor=STAT1 cellType=t1K562 control=STD treatment=IFNa30\ track wgEncodeSydhTfbsK562Stat1Ifna30StdPk\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_ctss_fwd Tc:ARPE-19Emt_01hr40minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_forward 0 305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep2.CNhs14483.13644-147A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13644-147A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_tpm_fwd Tc:ARPE-19Emt_01hr40minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_forward 1 305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep2.CNhs14483.13644-147A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13644-147A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H2azPk CD14+ H2A.Z broadPeak Monocytes CD14+ H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 306 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Monocytes CD14+ H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD14+ H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H2azPk\ type broadPeak\ wgEncodeRikenCageCd34mobilizedCellPapPlusRawRep1 CD34 cell pA+ + 1 bigWig 1.000000 1103090.000000 CD34+ Mobilized whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 306 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD34+ Mobilized whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel CD34 cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3CD34MOBILIZED localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageCd34mobilizedCellPapPlusRawRep1\ type bigWig 1.000000 1103090.000000\ wgEncodeCshlShortRnaSeqH1neuronsCellPlusRawRep2 H1ne cell + 2 bigWig 1.000000 3444797.000000 H1-neurons whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 306 0 0 0 127 127 127 0 0 0 expression 0 longLabel H1-neurons whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel H1ne cell + 2\ subGroups view=PlusSignal cellType=t3H1NEURONS localization=CELL protocol=NONE rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqH1neuronsCellPlusRawRep2\ type bigWig 1.000000 3444797.000000\ wgEncodeUwHistoneH7esH3k27me3StdDiffa9dHotspotsRep1 H7ES H3K27M3 Ht 1 broadPeak H7-hESC H3K27me3 diffProtA 9 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 306 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 diffProtA 9 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep1\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa9dHotspotsRep1\ type broadPeak\ encTfChipPkENCFF785FBD HEK293T BHLHE40 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in HEK293T from ENCODE 3 (ENCFF785FBD) 1 306 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in HEK293T from ENCODE 3 (ENCFF785FBD)\ parent encTfChipPk off\ shortLabel HEK293T BHLHE40\ subGroups cellType=HEK293T factor=BHLHE40\ track encTfChipPkENCFF785FBD\ wgEncodeAwgTfbsUtaHelas3CtcfUniPk HeLa-S3 CTCF t narrowPeak HeLa-S3 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 306 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel HeLa-S3 CTCF t\ subGroups tier=a20 cellType=a20HELAS3 factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaHelas3CtcfUniPk\ wgEncodeHaibTfbsH1hescSrfPcr1xRawRep2 hESC SRF PCR1 2 bigWig 0.254738 290.464996 H1-hESC SRF PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 306 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC SRF PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC SRF PCR1 2\ subGroups view=RawSignal factor=SRF cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescSrfPcr1xRawRep2\ type bigWig 0.254738 290.464996\ wgEncodeUwDnaseHgfRawRep2 HGF Sg 2 bigWig 1.000000 19584.000000 HGF DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 306 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HGF DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HGF Sg 2\ subGroups view=zRSig cellType=t3HGF rep=rep2 treatment=None\ track wgEncodeUwDnaseHgfRawRep2\ type bigWig 1.000000 19584.000000\ wgEncodeCshlLongRnaSeqHuvecCellLongnonpolyaMinusRawSigRep2 HUVEC cel pA- - 2 bigWig 1.000000 1051466.000000 HUVEC whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 306 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HUVEC cel pA- - 2\ subGroups view=MinusSignal cellType=t2HUVEC localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHuvecCellLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 1051466.000000\ wgEncodeUwTfbsHvmfCtcfStdHotspotsRep2 HVMF CTCF Ht 2 broadPeak HVMF CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 306 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HVMF CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel HVMF CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3HVMF rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHvmfCtcfStdHotspotsRep2\ type broadPeak\ wgEncodeSydhTfbsK562Stat1Ifna30StdSig K562 IFa3 STA1 Sd bigWig 0.000000 12739.599609 K562 STAT1 Standard IFNa 30min ChIP-seq Signal from ENCODE/SYDH 2 306 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 STAT1 Standard IFNa 30min ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFa3 STA1 Sd\ subGroups view=Signal factor=STAT1 cellType=t1K562 control=STD treatment=IFNa30\ track wgEncodeSydhTfbsK562Stat1Ifna30StdSig\ type bigWig 0.000000 12739.599609\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_ctss_rev Tc:ARPE-19Emt_01hr40minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_reverse 0 306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep2.CNhs14483.13644-147A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13644-147A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_tpm_rev Tc:ARPE-19Emt_01hr40minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_reverse 1 306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep2.CNhs14483.13644-147A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13644-147A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H2azSig CD14+ H2A.Z bigWig 0.040000 9489.480469 Monocytes CD14+ H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 307 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Monocytes CD14+ H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD14+ H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H2azSig\ type bigWig 0.040000 9489.480469\ wgEncodeRikenCageCd34mobilizedCellPapMinusRawRep1 CD34 cell pA+ - 1 bigWig 1.000000 690876.000000 CD34+ Mobilized whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 307 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD34+ Mobilized whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel CD34 cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3CD34MOBILIZED localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageCd34mobilizedCellPapMinusRawRep1\ type bigWig 1.000000 690876.000000\ wgEncodeCshlShortRnaSeqH1neuronsCellTapContigs H1ne cell TAP C bed 6 H1-neurons TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 307 0 0 0 127 127 127 0 0 0 expression 1 longLabel H1-neurons TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel H1ne cell TAP C\ subGroups view=Contigs cellType=t3H1NEURONS localization=CELL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqH1neuronsCellTapContigs\ type bed 6\ wgEncodeUwHistoneH7esH3k27me3StdDiffa9dPkRep1 H7ES H3K27M3 Pk 1 narrowPeak H7-hESC H3K27me3 diffProtA 9 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 307 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 diffProtA 9 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep1\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa9dPkRep1\ type narrowPeak\ encTfChipPkENCFF523NXP HEK293T CTBP1 narrowPeak Transcription Factor ChIP-seq Peaks of CTBP1 in HEK293T from ENCODE 3 (ENCFF523NXP) 1 307 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTBP1 in HEK293T from ENCODE 3 (ENCFF523NXP)\ parent encTfChipPk off\ shortLabel HEK293T CTBP1\ subGroups cellType=HEK293T factor=CTBP1\ track encTfChipPkENCFF523NXP\ wgEncodeAwgTfbsUwHelas3CtcfUniPk HeLa-S3 CTCF w narrowPeak HeLa-S3 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 307 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 CTCF w\ subGroups tier=a20 cellType=a20HELAS3 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHelas3CtcfUniPk\ wgEncodeHaibTfbsH1hescTaf1V0416102PkRep1 hESC TAF1 V102 1 broadPeak H1-hESC TAF1 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 307 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TAF1 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC TAF1 V102 1\ subGroups view=Peaks factor=TAF1 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescTaf1V0416102PkRep1\ type broadPeak\ wgEncodeUwDnaseHipeHotspotsRep1 HIPEpiC Ht 1 broadPeak HIPEpiC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 307 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HIPEpiC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HIPEpiC Ht 1\ subGroups view=Hot cellType=t3HIPEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHipeHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHuvecCellLongnonpolyaPlusRawSigRep1 HUVEC cel pA- + 1 bigWig 1.000000 844212.000000 HUVEC whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 307 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HUVEC cel pA- + 1\ subGroups view=PlusSignal cellType=t2HUVEC localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecCellLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 844212.000000\ wgEncodeUwTfbsHvmfCtcfStdPkRep2 HVMF CTCF Pk 2 narrowPeak HVMF CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 307 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HVMF CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel HVMF CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3HVMF rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHvmfCtcfStdPkRep2\ type narrowPeak\ wgEncodeSydhTfbsK562Stat1Ifna6hStdPk K562 IFa6 STA1 Sd narrowPeak K562 STAT1 Standard IFNa 6hrs ChIP-seq Peaks from ENCODE/SYDH 3 307 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 STAT1 Standard IFNa 6hrs ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFa6 STA1 Sd\ subGroups view=Peaks factor=STAT1 cellType=t1K562 control=STD treatment=IFNa6h\ track wgEncodeSydhTfbsK562Stat1Ifna6hStdPk\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_ctss_fwd Tc:ARPE-19Emt_01hr40minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_forward 0 307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep3.CNhs14484.13645-147A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13645-147A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_tpm_fwd Tc:ARPE-19Emt_01hr40minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_forward 1 307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep3.CNhs14484.13645-147A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13645-147A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k04me1Pk CD14+ H3K4m1 broadPeak Monocytes CD14+ H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 308 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Monocytes CD14+ H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD14+ H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k04me1Pk\ type broadPeak\ wgEncodeRikenCageCd34mobilizedCellPapAlnRep1 CD34 cell pA+ A 1 bam CD34+ Mobilized whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 308 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD34+ Mobilized whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel CD34 cell pA+ A 1\ subGroups view=Alignments cellType=t3CD34MOBILIZED localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageCd34mobilizedCellPapAlnRep1\ type bam\ wgEncodeCshlShortRnaSeqH1neuronsCellTapMinusRawRep1 H1ne cell TAP - 1 bigWig 1.000000 3937516.000000 H1-neurons TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 308 0 0 0 127 127 127 0 0 0 expression 0 longLabel H1-neurons TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel H1ne cell TAP - 1\ subGroups view=MinusSignal cellType=t3H1NEURONS localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqH1neuronsCellTapMinusRawRep1\ type bigWig 1.000000 3937516.000000\ wgEncodeUwHistoneH7esH3k27me3StdDiffa9dRawRep1 H7ES H3K27M3 Sg 1 bigWig 1.000000 6399.000000 H7-hESC H3K27me3 diffProtA 9 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 308 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K27me3 diffProtA 9 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep1\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa9dRawRep1\ type bigWig 1.000000 6399.000000\ encTfChipPkENCFF545SXB HEK293T ELF4 narrowPeak Transcription Factor ChIP-seq Peaks of ELF4 in HEK293T from ENCODE 3 (ENCFF545SXB) 1 308 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ELF4 in HEK293T from ENCODE 3 (ENCFF545SXB)\ parent encTfChipPk off\ shortLabel HEK293T ELF4\ subGroups cellType=HEK293T factor=ELF4\ track encTfChipPkENCFF545SXB\ wgEncodeAwgTfbsSydhHelas3E2f1UniPk HeLa-S3 E2F1 c1 narrowPeak HeLa-S3 TFBS Uniform Peaks of E2F1 from ENCODE/USC/Analysis 1 308 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of E2F1 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 E2F1 c1\ subGroups tier=a20 cellType=a20HELAS3 factor=E2F1 lab=USC\ track wgEncodeAwgTfbsSydhHelas3E2f1UniPk\ wgEncodeHaibTfbsH1hescTaf1V0416102RawRep1 hESC TAF1 V102 1 bigWig 0.212938 126.963997 H1-hESC TAF1 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 308 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC TAF1 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC TAF1 V102 1\ subGroups view=RawSignal factor=TAF1 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescTaf1V0416102RawRep1\ type bigWig 0.212938 126.963997\ wgEncodeUwDnaseHipePkRep1 HIPEpiC Pk 1 narrowPeak HIPEpiC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 308 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HIPEpiC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HIPEpiC Pk 1\ subGroups view=Peaks cellType=t3HIPEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHipePkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHuvecCellLongnonpolyaPlusRawSigRep2 HUVEC cel pA- + 2 bigWig 1.000000 1783683.000000 HUVEC whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 308 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HUVEC cel pA- + 2\ subGroups view=PlusSignal cellType=t2HUVEC localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHuvecCellLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 1783683.000000\ wgEncodeUwTfbsHvmfCtcfStdRawRep2 HVMF CTCF Sg 2 bigWig 1.000000 5159.000000 HVMF CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 308 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HVMF CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HVMF CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3HVMF rep=rep2 treatment=aNone\ track wgEncodeUwTfbsHvmfCtcfStdRawRep2\ type bigWig 1.000000 5159.000000\ wgEncodeSydhTfbsK562Stat1Ifna6hStdSig K562 IFa6 STA1 Sd bigWig 0.000000 8740.599609 K562 STAT1 Standard IFNa 6hrs ChIP-seq Signal from ENCODE/SYDH 2 308 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 STAT1 Standard IFNa 6hrs ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFa6 STA1 Sd\ subGroups view=Signal factor=STAT1 cellType=t1K562 control=STD treatment=IFNa6h\ track wgEncodeSydhTfbsK562Stat1Ifna6hStdSig\ type bigWig 0.000000 8740.599609\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_ctss_rev Tc:ARPE-19Emt_01hr40minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_reverse 0 308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep3.CNhs14484.13645-147A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13645-147A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_tpm_rev Tc:ARPE-19Emt_01hr40minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_reverse 1 308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep3.CNhs14484.13645-147A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13645-147A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k04me1Sig CD14+ H3K4m1 bigWig 0.040000 2981.399902 Monocytes CD14+ H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 309 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Monocytes CD14+ H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD14+ H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k04me1Sig\ type bigWig 0.040000 2981.399902\ wgEncodeCshlShortRnaSeqH1neuronsCellTapMinusRawRep2 H1ne cell TAP - 2 bigWig 1.000000 6120153.000000 H1-neurons TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 309 0 0 0 127 127 127 0 0 0 expression 0 longLabel H1-neurons TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel H1ne cell TAP - 2\ subGroups view=MinusSignal cellType=t3H1NEURONS localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqH1neuronsCellTapMinusRawRep2\ type bigWig 1.000000 6120153.000000\ wgEncodeUwHistoneH7esH3k27me3StdDiffa9dHotspotsRep2 H7ES H3K27M3 Ht 2 broadPeak H7-hESC H3K27me3 diffProtA 9 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 309 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 diffProtA 9 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K27M3 Ht 2\ subGroups view=Hot factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep2\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa9dHotspotsRep2\ type broadPeak\ wgEncodeRikenCageHaoafCellPapTssHmm HAoA cell pA+ bed 6 HAoAF whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 309 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAoAF whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HAoA cell pA+\ subGroups view=TssHmm cellType=t3HAOAF localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHaoafCellPapTssHmm\ type bed 6\ encTfChipPkENCFF146XEP HEK293T FOXA1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in HEK293T from ENCODE 3 (ENCFF146XEP) 1 309 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in HEK293T from ENCODE 3 (ENCFF146XEP)\ parent encTfChipPk off\ shortLabel HEK293T FOXA1\ subGroups cellType=HEK293T factor=FOXA1\ track encTfChipPkENCFF146XEP\ wgEncodeAwgTfbsSydhHelas3Hae2f1UniPk HeLa-S3 E2F1 c2 narrowPeak HeLa-S3 TFBS Uniform Peaks of HA-E2F1 from ENCODE/USC/Analysis 1 309 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of HA-E2F1 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel HeLa-S3 E2F1 c2\ subGroups tier=a20 cellType=a20HELAS3 factor=E2F1 lab=USC\ track wgEncodeAwgTfbsSydhHelas3Hae2f1UniPk\ wgEncodeHaibTfbsH1hescTaf1V0416102PkRep2 hESC TAF1 V102 2 broadPeak H1-hESC TAF1 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 309 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TAF1 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC TAF1 V102 2\ subGroups view=Peaks factor=TAF1 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescTaf1V0416102PkRep2\ type broadPeak\ wgEncodeUwDnaseHipeRawRep1 HIPEpiC Sg 1 bigWig 1.000000 25660.000000 HIPEpiC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 309 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HIPEpiC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HIPEpiC Sg 1\ subGroups view=zRSig cellType=t3HIPEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHipeRawRep1\ type bigWig 1.000000 25660.000000\ wgEncodeCshlLongRnaSeqHuvecCellPapAlnRep1 HUVEC cel pA+ A 1 bam HUVEC whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 309 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HUVEC cel pA+ A 1\ subGroups view=Alignments cellType=t2HUVEC localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecCellPapAlnRep1\ type bam\ wgEncodeUwTfbsHvmfInputStdRawRep1 HVMF In Sg 1 bigWig 1.000000 21799.000000 HVMF Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 309 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HVMF Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel HVMF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HVMF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsHvmfInputStdRawRep1\ type bigWig 1.000000 21799.000000\ wgEncodeSydhTfbsK562Stat1Ifng30StdPk K562 IFg3 STA1 Sd narrowPeak K562 STAT1 Standard IFNg 30min ChIP-seq Peaks from ENCODE/SYDH 3 309 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 STAT1 Standard IFNg 30min ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFg3 STA1 Sd\ subGroups view=Peaks factor=STAT1 cellType=t1K562 control=STD treatment=IFNg30\ track wgEncodeSydhTfbsK562Stat1Ifng30StdPk\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_ctss_fwd Tc:ARPE-19Emt_02hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_forward 0 309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep1.CNhs14485.13646-147B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13646-147B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_tpm_fwd Tc:ARPE-19Emt_02hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_forward 1 309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep1.CNhs14485.13646-147B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13646-147B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k04me2Pk CD14+ H3K4m2 broadPeak Monocytes CD14+ H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 310 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Monocytes CD14+ H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD14+ H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k04me2Pk\ type broadPeak\ wgEncodeCshlShortRnaSeqH1neuronsCellTapPlusRawRep1 H1ne cell TAP + 1 bigWig 1.000000 5150575.000000 H1-neurons TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 310 0 0 0 127 127 127 0 0 0 expression 0 longLabel H1-neurons TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel H1ne cell TAP + 1\ subGroups view=PlusSignal cellType=t3H1NEURONS localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqH1neuronsCellTapPlusRawRep1\ type bigWig 1.000000 5150575.000000\ wgEncodeUwHistoneH7esH3k27me3StdDiffa9dPkRep2 H7ES H3K27M3 Pk 2 narrowPeak H7-hESC H3K27me3 diffProtA 9 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 310 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 diffProtA 9 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K27M3 Pk 2\ subGroups view=Peaks factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep2\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa9dPkRep2\ type narrowPeak\ wgEncodeRikenCageHaoafCellPapPlusRawRep1 HAoA cell pA+ + 1 bigWig 1.000000 287700.000000 HAoAF whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 310 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoAF whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HAoA cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3HAOAF localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHaoafCellPapPlusRawRep1\ type bigWig 1.000000 287700.000000\ encTfChipPkENCFF203REX HEK293T FOXK2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXK2 in HEK293T from ENCODE 3 (ENCFF203REX) 1 310 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXK2 in HEK293T from ENCODE 3 (ENCFF203REX)\ parent encTfChipPk off\ shortLabel HEK293T FOXK2\ subGroups cellType=HEK293T factor=FOXK2\ track encTfChipPkENCFF203REX\ wgEncodeAwgTfbsSydhHelas3E2f4UniPk HeLa-S3 E2F4 narrowPeak HeLa-S3 TFBS Uniform Peaks of E2F4 from ENCODE/USC/Analysis 1 310 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of E2F4 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 E2F4\ subGroups tier=a20 cellType=a20HELAS3 factor=E2F4 lab=USC\ track wgEncodeAwgTfbsSydhHelas3E2f4UniPk\ wgEncodeHaibTfbsH1hescTaf1V0416102RawRep2 hESC TAF1 V102 2 bigWig 0.221181 169.923004 H1-hESC TAF1 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 310 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC TAF1 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC TAF1 V102 2\ subGroups view=RawSignal factor=TAF1 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescTaf1V0416102RawRep2\ type bigWig 0.221181 169.923004\ wgEncodeUwDnaseHipeHotspotsRep2 HIPEpiC Ht 2 broadPeak HIPEpiC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 310 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HIPEpiC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HIPEpiC Ht 2\ subGroups view=Hot cellType=t3HIPEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHipeHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHuvecCellPapAlnRep2 HUVEC cel pA+ A 2 bam HUVEC whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 310 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HUVEC cel pA+ A 2\ subGroups view=Alignments cellType=t2HUVEC localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHuvecCellPapAlnRep2\ type bam\ wgEncodeUwTfbsJurkatInputStdRawRep1 Jurk In Sg 1 bigWig 1.000000 18193.000000 Jurkat Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 310 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Jurkat Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel Jurk In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3JURKAT rep=rep1 treatment=aNone\ track wgEncodeUwTfbsJurkatInputStdRawRep1\ type bigWig 1.000000 18193.000000\ wgEncodeSydhTfbsK562Stat1Ifng30StdSig K562 IFg3 STA1 Sd bigWig 0.000000 15428.299805 K562 STAT1 Standard IFNg 30min ChIP-seq Signal from ENCODE/SYDH 2 310 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 STAT1 Standard IFNg 30min ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFg3 STA1 Sd\ subGroups view=Signal factor=STAT1 cellType=t1K562 control=STD treatment=IFNg30\ track wgEncodeSydhTfbsK562Stat1Ifng30StdSig\ type bigWig 0.000000 15428.299805\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_ctss_rev Tc:ARPE-19Emt_02hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_reverse 0 310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep1.CNhs14485.13646-147B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13646-147B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_tpm_rev Tc:ARPE-19Emt_02hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_reverse 1 310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep1.CNhs14485.13646-147B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13646-147B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k04me2Sig CD14+ H3K4m2 bigWig 0.040000 4909.040039 Monocytes CD14+ H3K4me2 Histone Mods by ChIPseq Signal from ENCODE/Broad 2 311 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Monocytes CD14+ H3K4me2 Histone Mods by ChIPseq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD14+ H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k04me2Sig\ type bigWig 0.040000 4909.040039\ wgEncodeCshlShortRnaSeqH1neuronsCellTapPlusRawRep2 H1ne cell TAP + 2 bigWig 1.000000 8821248.000000 H1-neurons TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 311 0 0 0 127 127 127 0 0 0 expression 0 longLabel H1-neurons TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel H1ne cell TAP + 2\ subGroups view=PlusSignal cellType=t3H1NEURONS localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqH1neuronsCellTapPlusRawRep2\ type bigWig 1.000000 8821248.000000\ wgEncodeUwHistoneH7esH3k27me3StdDiffa9dRawRep2 H7ES H3K27M3 Sg 2 bigWig 1.000000 7194.000000 H7-hESC H3K27me3 diffProtA 9 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 311 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K27me3 diffProtA 9 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K27M3 Sg 2\ subGroups view=zRSig factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep2\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa9dRawRep2\ type bigWig 1.000000 7194.000000\ wgEncodeRikenCageHaoafCellPapPlusRawRep2 HAoA cell pA+ + 2 bigWig 1.000000 210605.000000 HAoAF whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 311 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoAF whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HAoA cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3HAOAF localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHaoafCellPapPlusRawRep2\ type bigWig 1.000000 210605.000000\ encTfChipPkENCFF932EVL HEK293T FOXM1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXM1 in HEK293T from ENCODE 3 (ENCFF932EVL) 1 311 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXM1 in HEK293T from ENCODE 3 (ENCFF932EVL)\ parent encTfChipPk off\ shortLabel HEK293T FOXM1\ subGroups cellType=HEK293T factor=FOXM1\ track encTfChipPkENCFF932EVL\ wgEncodeAwgTfbsSydhHelas3E2f6UniPk HeLa-S3 E2F6 narrowPeak HeLa-S3 TFBS Uniform Peaks of E2F6 from ENCODE/USC/Analysis 1 311 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of E2F6 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 E2F6\ subGroups tier=a20 cellType=a20HELAS3 factor=E2F6 lab=USC\ track wgEncodeAwgTfbsSydhHelas3E2f6UniPk\ wgEncodeHaibTfbsH1hescTaf7sc101167V0416102PkRep1 hESC TAF7 V102 1 broadPeak H1-hESC TAF7 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 311 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TAF7 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC TAF7 V102 1\ subGroups view=Peaks factor=TAF7SC101167 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescTaf7sc101167V0416102PkRep1\ type broadPeak\ wgEncodeUwDnaseHipePkRep2 HIPEpiC Pk 2 narrowPeak HIPEpiC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 311 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HIPEpiC DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HIPEpiC Pk 2\ subGroups view=Peaks cellType=t3HIPEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHipePkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHuvecCellPapContigs HUVEC cel pA+ C bed 6 + HUVEC whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 311 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HUVEC cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HUVEC localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqHuvecCellPapContigs\ type bed 6 +\ wgEncodeSydhTfbsK562Stat1Ifng6hStdPk K562 IFg6 STA1 Sd narrowPeak K562 STAT1 Standard IFNg 6hrs ChIP-seq Peaks from ENCODE/SYDH 3 311 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 STAT1 Standard IFNg 6hrs ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFg6 STA1 Sd\ subGroups view=Peaks factor=STAT1 cellType=t1K562 control=STD treatment=IFNg6h\ track wgEncodeSydhTfbsK562Stat1Ifng6hStdPk\ type narrowPeak\ wgEncodeUwTfbsLncapInputStdRawRep1 LNCP In Sg 1 bigWig 1.000000 21185.000000 LNCaP Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 311 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel LNCaP Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel LNCP In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3LNCAP rep=rep1 treatment=aNone\ track wgEncodeUwTfbsLncapInputStdRawRep1\ type bigWig 1.000000 21185.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_ctss_fwd Tc:ARPE-19Emt_02hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_forward 0 311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep2.CNhs14486.13647-147B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13647-147B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_tpm_fwd Tc:ARPE-19Emt_02hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_forward 1 311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep2.CNhs14486.13647-147B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13647-147B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k04me3Pk CD14+ H3K4m3 broadPeak Monocytes CD14+ H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 312 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Monocytes CD14+ H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD14+ H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k04me3Pk\ type broadPeak\ wgEncodeUwHistoneH7esH3k27me3StdDiffa14dHotspotsRep1 H7ES H3K27M3 Ht 1 broadPeak H7-hESC H3K27me3 diffProtA 14 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 312 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 diffProtA 14 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep1\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa14dHotspotsRep1\ type broadPeak\ wgEncodeCshlShortRnaSeqHaoafCellTapContigs HAAF cell TAP C bed 6 HAoAF TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 312 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAoAF TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HAAF cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t3HAOAF localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqHaoafCellTapContigs\ type bed 6\ wgEncodeRikenCageHaoafCellPapMinusRawRep1 HAoA cell pA+ - 1 bigWig 1.000000 279795.000000 HAoAF whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 312 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoAF whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HAoA cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3HAOAF localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHaoafCellPapMinusRawRep1\ type bigWig 1.000000 279795.000000\ encTfChipPkENCFF520CSO HEK293T L3MBTL2 narrowPeak Transcription Factor ChIP-seq Peaks of L3MBTL2 in HEK293T from ENCODE 3 (ENCFF520CSO) 1 312 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of L3MBTL2 in HEK293T from ENCODE 3 (ENCFF520CSO)\ parent encTfChipPk off\ shortLabel HEK293T L3MBTL2\ subGroups cellType=HEK293T factor=L3MBTL2\ track encTfChipPkENCFF520CSO\ wgEncodeAwgTfbsSydhHelas3Elk112771IggrabUniPk HeLa-S3 ELK1 narrowPeak HeLa-S3 TFBS Uniform Peaks of ELK1_(1277-1) from ENCODE/Stanford/Analysis 1 312 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of ELK1_(1277-1) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 ELK1\ subGroups tier=a20 cellType=a20HELAS3 factor=ELK1 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Elk112771IggrabUniPk\ wgEncodeHaibTfbsH1hescTaf7sc101167V0416102RawRep1 hESC TAF7 V102 1 bigWig 0.297870 286.252991 H1-hESC TAF7 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 312 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC TAF7 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC TAF7 V102 1\ subGroups view=RawSignal factor=TAF7SC101167 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescTaf7sc101167V0416102RawRep1\ type bigWig 0.297870 286.252991\ wgEncodeUwDnaseHipeRawRep2 HIPEpiC Sg 2 bigWig 1.000000 16971.000000 HIPEpiC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 312 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HIPEpiC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HIPEpiC Sg 2\ subGroups view=zRSig cellType=t3HIPEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHipeRawRep2\ type bigWig 1.000000 16971.000000\ wgEncodeCshlLongRnaSeqHuvecCellPapJunctions HUVEC cel pA+ J bed 6 + HUVEC whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 312 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HUVEC cel pA+ J\ subGroups view=Junctions cellType=t2HUVEC localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHuvecCellPapJunctions\ type bed 6 +\ wgEncodeSydhTfbsK562Stat1Ifng6hStdSig K562 IFg6 STA1 Sd bigWig 0.000000 10917.700195 K562 STAT1 Standard IFNg 6hrs ChIP-seq Signal from ENCODE/SYDH 2 312 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 STAT1 Standard IFNg 6hrs ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFg6 STA1 Sd\ subGroups view=Signal factor=STAT1 cellType=t1K562 control=STD treatment=IFNg6h\ track wgEncodeSydhTfbsK562Stat1Ifng6hStdSig\ type bigWig 0.000000 10917.700195\ wgEncodeUwTfbsNb4CtcfStdHotspotsRep1 NB4 CTCF Ht 1 broadPeak NB4 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 312 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel NB4 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3NB4 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsNb4CtcfStdHotspotsRep1\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_ctss_rev Tc:ARPE-19Emt_02hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_reverse 0 312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep2.CNhs14486.13647-147B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13647-147B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_tpm_rev Tc:ARPE-19Emt_02hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_reverse 1 312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep2.CNhs14486.13647-147B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13647-147B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k04me3Sig CD14+ H3K4m3 bigWig 0.040000 40304.640625 Monocytes CD14+ H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 313 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Monocytes CD14+ H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD14+ H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k04me3Sig\ type bigWig 0.040000 40304.640625\ wgEncodeUwHistoneH7esH3k27me3StdDiffa14dPkRep1 H7ES H3K27M3 Pk 1 narrowPeak H7-hESC H3K27me3 diffProtA 14 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 313 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 diffProtA 14 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep1\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa14dPkRep1\ type narrowPeak\ wgEncodeCshlShortRnaSeqHaoaf61113019CellTapMinusRep1 HAAF cell TAP - 1 bigWig 1.000000 12118013.000000 HAoAF TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 313 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoAF TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HAAF cell TAP - 1\ subGroups view=MinusSignal cellType=t3HAOAF localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHaoaf61113019CellTapMinusRep1\ type bigWig 1.000000 12118013.000000\ wgEncodeRikenCageHaoafCellPapMinusRawRep2 HAoA cell pA+ - 2 bigWig 1.000000 189132.000000 HAoAF whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 313 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoAF whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HAoA cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3HAOAF localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHaoafCellPapMinusRawRep2\ type bigWig 1.000000 189132.000000\ encTfChipPkENCFF333UCS HEK293T LEF1 narrowPeak Transcription Factor ChIP-seq Peaks of LEF1 in HEK293T from ENCODE 3 (ENCFF333UCS) 1 313 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of LEF1 in HEK293T from ENCODE 3 (ENCFF333UCS)\ parent encTfChipPk off\ shortLabel HEK293T LEF1\ subGroups cellType=HEK293T factor=LEF1\ track encTfChipPkENCFF333UCS\ wgEncodeAwgTfbsSydhHelas3Elk4UcdUniPk HeLa-S3 ELK4 narrowPeak HeLa-S3 TFBS Uniform Peaks of ELK4 from ENCODE/USC/Analysis 1 313 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of ELK4 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 ELK4\ subGroups tier=a20 cellType=a20HELAS3 factor=ELK4 lab=USC\ track wgEncodeAwgTfbsSydhHelas3Elk4UcdUniPk\ wgEncodeHaibTfbsH1hescTaf7sc101167V0416102PkRep2 hESC TAF7 V102 2 broadPeak H1-hESC TAF7 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 313 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TAF7 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC TAF7 V102 2\ subGroups view=Peaks factor=TAF7SC101167 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescTaf7sc101167V0416102PkRep2\ type broadPeak\ wgEncodeUwDnaseHl60HotspotsRep1 HL60 Ht 1 broadPeak HL-60 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 313 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HL60 Ht 1\ subGroups view=Hot cellType=t3HL60 rep=rep1 treatment=None\ track wgEncodeUwDnaseHl60HotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHuvecCellPapMinusRawSigRep1 HUVEC cel pA+ - 1 bigWig 1.000000 263759.000000 HUVEC whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 313 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HUVEC cel pA+ - 1\ subGroups view=MinusSignal cellType=t2HUVEC localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecCellPapMinusRawSigRep1\ type bigWig 1.000000 263759.000000\ wgEncodeSydhTfbsK562Stat2Ifna30StdPk K562 IFa3 STA2 Sd narrowPeak K562 STAT2 Standard IFNa 30min ChIP-seq Peaks from ENCODE/SYDH 3 313 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 STAT2 Standard IFNa 30min ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFa3 STA2 Sd\ subGroups view=Peaks factor=STAT2 cellType=t1K562 control=STD treatment=IFNa30\ track wgEncodeSydhTfbsK562Stat2Ifna30StdPk\ type narrowPeak\ wgEncodeUwTfbsNb4CtcfStdPkRep1 NB4 CTCF Pk 1 narrowPeak NB4 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 313 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel NB4 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3NB4 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsNb4CtcfStdPkRep1\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_ctss_fwd Tc:ARPE-19Emt_02hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_forward 0 313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep3.CNhs14487.13648-147B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13648-147B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_tpm_fwd Tc:ARPE-19Emt_02hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_forward 1 313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep3.CNhs14487.13648-147B3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13648-147B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k09acPk CD14+ H3K9ac broadPeak Monocytes CD14+ H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 314 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Monocytes CD14+ H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD14+ H3K9ac\ subGroups view=Peaks factor=H3K09AC cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k09acPk\ type broadPeak\ wgEncodeUwHistoneH7esH3k27me3StdDiffa14dRawRep1 H7ES H3K27M3 Sg 1 bigWig 1.000000 3828.000000 H7-hESC H3K27me3 diffProtA 14 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 314 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K27me3 diffProtA 14 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep1\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa14dRawRep1\ type bigWig 1.000000 3828.000000\ wgEncodeCshlShortRnaSeqHaoaf609010111CellTapMinusRep2 HAAF cell TAP - 2 bigWig 1.000000 16086446.000000 HAoAF TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 314 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoAF TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HAAF cell TAP - 2\ subGroups view=MinusSignal cellType=t3HAOAF localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHaoaf609010111CellTapMinusRep2\ type bigWig 1.000000 16086446.000000\ wgEncodeRikenCageHaoafCellPapAlnRep1 HAoA cell pA+ A 1 bam HAoAF whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 314 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAoAF whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HAoA cell pA+ A 1\ subGroups view=Alignments cellType=t3HAOAF localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHaoafCellPapAlnRep1\ type bam\ encTfChipPkENCFF223YXP HEK293T NFRKB narrowPeak Transcription Factor ChIP-seq Peaks of NFRKB in HEK293T from ENCODE 3 (ENCFF223YXP) 1 314 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NFRKB in HEK293T from ENCODE 3 (ENCFF223YXP)\ parent encTfChipPk off\ shortLabel HEK293T NFRKB\ subGroups cellType=HEK293T factor=NFRKB\ track encTfChipPkENCFF223YXP\ wgEncodeAwgTfbsSydhHelas3P300sc584sc584IggrabUniPk HeLa-S3 EP300 narrowPeak HeLa-S3 TFBS Uniform Peaks of p300_(SC-584) from ENCODE/Stanford/Analysis 1 314 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of p300_(SC-584) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 EP300\ subGroups tier=a20 cellType=a20HELAS3 factor=EP300 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3P300sc584sc584IggrabUniPk\ wgEncodeHaibTfbsH1hescTaf7sc101167V0416102RawRep2 hESC TAF7 V102 2 bigWig 0.069639 259.299988 H1-hESC TAF7 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 314 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC TAF7 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC TAF7 V102 2\ subGroups view=RawSignal factor=TAF7SC101167 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescTaf7sc101167V0416102RawRep2\ type bigWig 0.069639 259.299988\ wgEncodeUwDnaseHl60PkRep1 HL60 Pk 1 narrowPeak HL-60 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 314 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HL60 Pk 1\ subGroups view=Peaks cellType=t3HL60 rep=rep1 treatment=None\ track wgEncodeUwDnaseHl60PkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHuvecCellPapMinusRawSigRep2 HUVEC cel pA+ - 2 bigWig 1.000000 251226.000000 HUVEC whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 314 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HUVEC cel pA+ - 2\ subGroups view=MinusSignal cellType=t2HUVEC localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHuvecCellPapMinusRawSigRep2\ type bigWig 1.000000 251226.000000\ wgEncodeSydhTfbsK562Stat2Ifna30StdSig K562 IFa3 STA2 Sd bigWig 0.000000 10111.900391 K562 STAT2 Standard IFNa 30min ChIP-seq Signal from ENCODE/SYDH 2 314 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 STAT2 Standard IFNa 30min ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFa3 STA2 Sd\ subGroups view=Signal factor=STAT2 cellType=t1K562 control=STD treatment=IFNa30\ track wgEncodeSydhTfbsK562Stat2Ifna30StdSig\ type bigWig 0.000000 10111.900391\ wgEncodeUwTfbsNb4CtcfStdRawRep1 NB4 CTCF Sg 1 bigWig 1.000000 11314.000000 NB4 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 314 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NB4 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel NB4 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3NB4 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsNb4CtcfStdRawRep1\ type bigWig 1.000000 11314.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_ctss_rev Tc:ARPE-19Emt_02hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_reverse 0 314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep3.CNhs14487.13648-147B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13648-147B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_tpm_rev Tc:ARPE-19Emt_02hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_reverse 1 314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep3.CNhs14487.13648-147B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13648-147B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k09acSig CD14+ H3K9ac bigWig 0.040000 5969.040039 Monocytes CD14+ H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 315 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Monocytes CD14+ H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD14+ H3K9ac\ subGroups view=Signal factor=H3K09AC cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k09acSig\ type bigWig 0.040000 5969.040039\ wgEncodeUwHistoneH7esH3k27me3StdDiffa14dHotspotsRep2 H7ES H3K27M3 Ht 2 broadPeak H7-hESC H3K27me3 diffProtA 14 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 315 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 diffProtA 14 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K27M3 Ht 2\ subGroups view=Hot factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep2\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa14dHotspotsRep2\ type broadPeak\ wgEncodeCshlShortRnaSeqHaoaf61113019CellTapPlusRep1 HAAF cell TAP + 1 bigWig 1.000000 3929703.000000 HAoAF TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 315 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoAF TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HAAF cell TAP + 1\ subGroups view=PlusSignal cellType=t3HAOAF localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHaoaf61113019CellTapPlusRep1\ type bigWig 1.000000 3929703.000000\ wgEncodeRikenCageHaoafCellPapAlnRep2 HAoA cell pA+ A 2 bam HAoAF whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 315 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAoAF whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HAoA cell pA+ A 2\ subGroups view=Alignments cellType=t3HAOAF localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHaoafCellPapAlnRep2\ type bam\ encTfChipPkENCFF331WKY HEK293T PKNOX1 narrowPeak Transcription Factor ChIP-seq Peaks of PKNOX1 in HEK293T from ENCODE 3 (ENCFF331WKY) 1 315 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of PKNOX1 in HEK293T from ENCODE 3 (ENCFF331WKY)\ parent encTfChipPk off\ shortLabel HEK293T PKNOX1\ subGroups cellType=HEK293T factor=PKNOX1\ track encTfChipPkENCFF331WKY\ wgEncodeAwgTfbsBroadHelas3Ezh239875UniPk HeLa-S3 EZH2 narrowPeak HeLa-S3 TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis 1 315 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 EZH2\ subGroups tier=a20 cellType=a20HELAS3 factor=EZH2 lab=Broad\ track wgEncodeAwgTfbsBroadHelas3Ezh239875UniPk\ wgEncodeHaibTfbsH1hescTcf12Pcr1xPkRep1 hESC TCF12 PCR1 1 broadPeak H1-hESC TCF12 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 315 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TCF12 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC TCF12 PCR1 1\ subGroups view=Peaks factor=TCF12 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescTcf12Pcr1xPkRep1\ type broadPeak\ wgEncodeUwDnaseHl60RawRep1 HL60 Sg 1 bigWig 1.000000 14390.000000 HL-60 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 315 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HL-60 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HL60 Sg 1\ subGroups view=zRSig cellType=t3HL60 rep=rep1 treatment=None\ track wgEncodeUwDnaseHl60RawRep1\ type bigWig 1.000000 14390.000000\ wgEncodeCshlLongRnaSeqHuvecCellPapPlusRawSigRep1 HUVEC cel pA+ + 1 bigWig 1.000000 647068.000000 HUVEC whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 315 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HUVEC cel pA+ + 1\ subGroups view=PlusSignal cellType=t2HUVEC localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecCellPapPlusRawSigRep1\ type bigWig 1.000000 647068.000000\ wgEncodeSydhTfbsK562Stat2Ifna6hStdPk K562 IFa6 STA2 Sd narrowPeak K562 STAT2 Standard IFNa 6hrs ChIP-seq Peaks from ENCODE/SYDH 3 315 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 STAT2 Standard IFNa 6hrs ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 IFa6 STA2 Sd\ subGroups view=Peaks factor=STAT2 cellType=t1K562 control=STD treatment=IFNa6h\ track wgEncodeSydhTfbsK562Stat2Ifna6hStdPk\ type narrowPeak\ wgEncodeUwTfbsNb4InputStdRawRep1 NB4 In Sg 1 bigWig 1.000000 18098.000000 NB4 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 315 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NB4 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel NB4 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3NB4 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsNb4InputStdRawRep1\ type bigWig 1.000000 18098.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_ctss_fwd Tc:ARPE-19Emt_02hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_forward 0 315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep1.CNhs14488.13649-147B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13649-147B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_tpm_fwd Tc:ARPE-19Emt_02hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_forward 1 315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep1.CNhs14488.13649-147B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13649-147B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k09me3Pk CD14+ H3K9m3 broadPeak Monocytes CD14+ H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 316 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Monocytes CD14+ H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD14+ H3K9m3\ subGroups view=Peaks factor=H3K09ME3 cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k09me3Pk\ type broadPeak\ wgEncodeUwHistoneH7esH3k27me3StdDiffa14dPkRep2 H7ES H3K27M3 Pk 2 narrowPeak H7-hESC H3K27me3 diffProtA 14 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 316 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 diffProtA 14 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K27M3 Pk 2\ subGroups view=Peaks factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep2\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa14dPkRep2\ type narrowPeak\ wgEncodeCshlShortRnaSeqHaoaf609010111CellTapPlusRep2 HAAF cell TAP + 2 bigWig 1.000000 5052458.000000 HAoAF TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 316 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoAF TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HAAF cell TAP + 2\ subGroups view=PlusSignal cellType=t3HAOAF localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHaoaf609010111CellTapPlusRep2\ type bigWig 1.000000 5052458.000000\ wgEncodeRikenCageHaoecCellPapTssHmm HAoE cell pA+ bed 6 HAoEC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 316 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAoEC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HAoE cell pA+\ subGroups view=TssHmm cellType=t3HAOEC localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHaoecCellPapTssHmm\ type bed 6\ encTfChipPkENCFF240PYU HEK293T SP1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in HEK293T from ENCODE 3 (ENCFF240PYU) 1 316 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SP1 in HEK293T from ENCODE 3 (ENCFF240PYU)\ parent encTfChipPk off\ shortLabel HEK293T SP1\ subGroups cellType=HEK293T factor=SP1\ track encTfChipPkENCFF240PYU\ wgEncodeAwgTfbsSydhHelas3Spt20UniPk HeLa-S3 FAM48A narrowPeak HeLa-S3 TFBS Uniform Peaks of SPT20 from ENCODE/Stanford/Analysis 1 316 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of SPT20 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 FAM48A\ subGroups tier=a20 cellType=a20HELAS3 factor=FAM48A lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Spt20UniPk\ wgEncodeHaibTfbsH1hescTcf12Pcr1xRawRep1 hESC TCF12 PCR1 1 bigWig 0.334427 204.669006 H1-hESC TCF12 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 316 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC TCF12 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC TCF12 PCR1 1\ subGroups view=RawSignal factor=TCF12 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescTcf12Pcr1xRawRep1\ type bigWig 0.334427 204.669006\ wgEncodeUwDnaseHl60HotspotsRep2 HL60 Ht 2 broadPeak HL-60 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 316 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HL60 Ht 2\ subGroups view=Hot cellType=t3HL60 rep=rep2 treatment=None\ track wgEncodeUwDnaseHl60HotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHuvecCellPapPlusRawSigRep2 HUVEC cel pA+ + 2 bigWig 1.000000 643851.000000 HUVEC whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 316 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HUVEC cel pA+ + 2\ subGroups view=PlusSignal cellType=t2HUVEC localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHuvecCellPapPlusRawSigRep2\ type bigWig 1.000000 643851.000000\ wgEncodeSydhTfbsK562Stat2Ifna6hStdSig K562 IFa6 STA2 Sd bigWig 0.000000 10876.299805 K562 STAT2 Standard IFNa 6hrs ChIP-seq Signal from ENCODE/SYDH 2 316 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 STAT2 Standard IFNa 6hrs ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFa6 STA2 Sd\ subGroups view=Signal factor=STAT2 cellType=t1K562 control=STD treatment=IFNa6h\ track wgEncodeSydhTfbsK562Stat2Ifna6hStdSig\ type bigWig 0.000000 10876.299805\ wgEncodeUwTfbsNhdfneoCtcfStdHotspotsRep1 NHDF CTCF Ht 1 broadPeak NHDF-neo CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 316 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel NHDF CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3NHDFNEO rep=rep1 treatment=aNone\ track wgEncodeUwTfbsNhdfneoCtcfStdHotspotsRep1\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_ctss_rev Tc:ARPE-19Emt_02hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_reverse 0 316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep1.CNhs14488.13649-147B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13649-147B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_tpm_rev Tc:ARPE-19Emt_02hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_reverse 1 316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep1.CNhs14488.13649-147B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13649-147B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k09me3Sig CD14+ H3K9m3 bigWig 0.040000 109176.156250 Monocytes CD14+ H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 317 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Monocytes CD14+ H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD14+ H3K9m3\ subGroups view=Signal factor=H3K09ME3 cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k09me3Sig\ type bigWig 0.040000 109176.156250\ wgEncodeUwHistoneH7esH3k27me3StdDiffa14dRawRep2 H7ES H3K27M3 Sg 2 bigWig 1.000000 3743.000000 H7-hESC H3K27me3 diffProtA 14 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 317 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K27me3 diffProtA 14 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K27M3 Sg 2\ subGroups view=zRSig factor=H3K27ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep2\ track wgEncodeUwHistoneH7esH3k27me3StdDiffa14dRawRep2\ type bigWig 1.000000 3743.000000\ wgEncodeCshlShortRnaSeqHaoecCellTapContigs HAEC cell TAP C bed 6 HAoEC TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 317 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAoEC TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HAEC cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t3HAOEC localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqHaoecCellTapContigs\ type bed 6\ wgEncodeRikenCageHaoecCellPapPlusRawRep1 HAoE cell pA+ + 1 bigWig 1.000000 338792.000000 HAoEC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 317 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoEC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HAoE cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3HAOEC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHaoecCellPapPlusRawRep1\ type bigWig 1.000000 338792.000000\ encTfChipPkENCFF813VLK HEK293T SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in HEK293T from ENCODE 3 (ENCFF813VLK) 1 317 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in HEK293T from ENCODE 3 (ENCFF813VLK)\ parent encTfChipPk off\ shortLabel HEK293T SUZ12\ subGroups cellType=HEK293T factor=SUZ12\ track encTfChipPkENCFF813VLK\ wgEncodeAwgTfbsSydhHelas3CfosUniPk HeLa-S3 FOS narrowPeak HeLa-S3 TFBS Uniform Peaks of c-Fos from ENCODE/Yale/Analysis 1 317 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of c-Fos from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 FOS\ subGroups tier=a20 cellType=a20HELAS3 factor=FOS lab=Yale\ track wgEncodeAwgTfbsSydhHelas3CfosUniPk\ wgEncodeHaibTfbsH1hescTcf12Pcr1xPkRep2 hESC TCF12 PCR1 2 broadPeak H1-hESC TCF12 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 317 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TCF12 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC TCF12 PCR1 2\ subGroups view=Peaks factor=TCF12 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescTcf12Pcr1xPkRep2\ type broadPeak\ wgEncodeUwDnaseHl60PkRep2 HL60 Pk 2 narrowPeak HL-60 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 317 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HL60 Pk 2\ subGroups view=Peaks cellType=t3HL60 rep=rep2 treatment=None\ track wgEncodeUwDnaseHl60PkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHuvecCytosolLongnonpolyaAlnRep3 HUVEC cyt pA- A 1 bam HUVEC cytosol polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 317 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC cytosol polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HUVEC cyt pA- A 1\ subGroups view=Alignments cellType=t2HUVEC localization=CYTOSOL rnaExtract=PAM rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecCytosolLongnonpolyaAlnRep3\ type bam\ wgEncodeSydhTfbsK562Tal1sc12984IggmusPk K562 TAL1 IgM narrowPeak K562 TAL1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 317 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TAL1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 TAL1 IgM\ subGroups view=Peaks factor=TAL1SC12984 cellType=t1K562 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsK562Tal1sc12984IggmusPk\ type narrowPeak\ wgEncodeUwTfbsNhdfneoCtcfStdPkRep1 NHDF CTCF Pk 1 narrowPeak NHDF-neo CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 317 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel NHDF CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3NHDFNEO rep=rep1 treatment=aNone\ track wgEncodeUwTfbsNhdfneoCtcfStdPkRep1\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_ctss_fwd Tc:ARPE-19Emt_02hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_forward 0 317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep2.CNhs14489.13650-147B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13650-147B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_tpm_fwd Tc:ARPE-19Emt_02hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_forward 1 317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep2.CNhs14489.13650-147B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13650-147B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k27acPk CD14+ H3K27ac broadPeak Monocytes CD14+ H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 318 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Monocytes CD14+ H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD14+ H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k27acPk\ type broadPeak\ wgEncodeUwHistoneH7esH3k27me3StdHotspotsRep1 H7ES H3K27M3 Ht 1 broadPeak H7-hESC H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 318 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t3H7HESC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneH7esH3k27me3StdHotspotsRep1\ type broadPeak\ wgEncodeCshlShortRnaSeqHaoec70717061CellTapMinusRep1 HAEC cell TAP - 1 bigWig 1.000000 20783798.000000 HAoEC TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 318 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoEC TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HAEC cell TAP - 1\ subGroups view=MinusSignal cellType=t3HAOEC localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHaoec70717061CellTapMinusRep1\ type bigWig 1.000000 20783798.000000\ wgEncodeRikenCageHaoecCellPapPlusRawRep2 HAoE cell pA+ + 2 bigWig 1.000000 158652.000000 HAoEC whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 318 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoEC whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HAoE cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3HAOEC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHaoecCellPapPlusRawRep2\ type bigWig 1.000000 158652.000000\ encTfChipPkENCFF514OOQ HEK293T ZFX narrowPeak Transcription Factor ChIP-seq Peaks of ZFX in HEK293T from ENCODE 3 (ENCFF514OOQ) 1 318 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZFX in HEK293T from ENCODE 3 (ENCFF514OOQ)\ parent encTfChipPk off\ shortLabel HEK293T ZFX\ subGroups cellType=HEK293T factor=ZFX\ track encTfChipPkENCFF514OOQ\ wgEncodeAwgTfbsHaibHelas3GabpPcr1xUniPk HeLa-S3 GABPA narrowPeak HeLa-S3 TFBS Uniform Peaks of GABP from ENCODE/HudsonAlpha/Analysis 1 318 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of GABP from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 GABPA\ subGroups tier=a20 cellType=a20HELAS3 factor=GABPA lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHelas3GabpPcr1xUniPk\ wgEncodeHaibTfbsH1hescTcf12Pcr1xRawRep2 hESC TCF12 PCR1 2 bigWig 0.306516 188.354004 H1-hESC TCF12 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 318 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC TCF12 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC TCF12 PCR1 2\ subGroups view=RawSignal factor=TCF12 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescTcf12Pcr1xRawRep2\ type bigWig 0.306516 188.354004\ wgEncodeUwDnaseHl60RawRep2 HL60 Sg 2 bigWig 1.000000 16883.000000 HL-60 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 318 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HL-60 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HL60 Sg 2\ subGroups view=zRSig cellType=t3HL60 rep=rep2 treatment=None\ track wgEncodeUwDnaseHl60RawRep2\ type bigWig 1.000000 16883.000000\ wgEncodeCshlLongRnaSeqHuvecCytosolPamContigsV2 HUVEC cyt pA- C bed 6 + HUVEC cytosol polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 318 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC cytosol polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HUVEC cyt pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HUVEC localization=CYTOSOL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqHuvecCytosolPamContigsV2\ type bed 6 +\ wgEncodeSydhTfbsK562Tal1sc12984IggmusSig K562 TAL1 IgM bigWig 1.000000 12404.000000 K562 TAL1 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 318 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 TAL1 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 TAL1 IgM\ subGroups view=Signal factor=TAL1SC12984 cellType=t1K562 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsK562Tal1sc12984IggmusSig\ type bigWig 1.000000 12404.000000\ wgEncodeUwTfbsNhdfneoCtcfStdRawRep1 NHDF CTCF Sg 1 bigWig 1.000000 11619.000000 NHDF-neo CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 318 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHDF-neo CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel NHDF CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3NHDFNEO rep=rep1 treatment=aNone\ track wgEncodeUwTfbsNhdfneoCtcfStdRawRep1\ type bigWig 1.000000 11619.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_ctss_rev Tc:ARPE-19Emt_02hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_reverse 0 318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep2.CNhs14489.13650-147B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13650-147B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_tpm_rev Tc:ARPE-19Emt_02hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_reverse 1 318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep2.CNhs14489.13650-147B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13650-147B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k27acSig CD14+ H3K27ac bigWig 0.040000 4280.359863 Monocytes CD14+ H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 319 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Monocytes CD14+ H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD14+ H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k27acSig\ type bigWig 0.040000 4280.359863\ wgEncodeUwHistoneH7esH3k27me3StdPkRep1 H7ES H3K27M3 Pk 1 narrowPeak H7-hESC H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 319 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t3H7HESC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneH7esH3k27me3StdPkRep1\ type narrowPeak\ wgEncodeCshlShortRnaSeqHaoec80611021CellTapMinusRep2 HAEC cell TAP - 2 bigWig 1.000000 14732295.000000 HAoEC TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 319 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoEC TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HAEC cell TAP - 2\ subGroups view=MinusSignal cellType=t3HAOEC localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHaoec80611021CellTapMinusRep2\ type bigWig 1.000000 14732295.000000\ wgEncodeRikenCageHaoecCellPapMinusRawRep1 HAoE cell pA+ - 1 bigWig 1.000000 450029.000000 HAoEC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 319 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoEC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HAoE cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3HAOEC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHaoecCellPapMinusRawRep1\ type bigWig 1.000000 450029.000000\ encTfChipPkENCFF318QLK HEK293T ZNF384 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF384 in HEK293T from ENCODE 3 (ENCFF318QLK) 1 319 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF384 in HEK293T from ENCODE 3 (ENCFF318QLK)\ parent encTfChipPk off\ shortLabel HEK293T ZNF384\ subGroups cellType=HEK293T factor=ZNF384\ track encTfChipPkENCFF318QLK\ wgEncodeAwgTfbsSydhHelas3Gtf2f1ab28179IggrabUniPk HeLa-S3 GTF2F1 narrowPeak HeLa-S3 TFBS Uniform Peaks of GTF2F1_(AB28179) from ENCODE/Stanford/Analysis 1 319 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of GTF2F1_(AB28179) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 GTF2F1\ subGroups tier=a20 cellType=a20HELAS3 factor=GTF2F1 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Gtf2f1ab28179IggrabUniPk\ wgEncodeHaibTfbsH1hescTead4sc101184V0422111PkRep1 hESC TEAD4 V11 1 broadPeak H1-hESC TEAD4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 319 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TEAD4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC TEAD4 V11 1\ subGroups view=Peaks factor=TEAD4SC101184 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescTead4sc101184V0422111PkRep1\ type broadPeak\ wgEncodeUwDnaseHmecHotspotsRep1 HMEC Ht 1 broadPeak HMEC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 319 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMEC Ht 1\ subGroups view=Hot cellType=t3HMEC rep=rep1 treatment=None\ track wgEncodeUwDnaseHmecHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHuvecCytosolPamJunctions HUVEC cyt pA- J bed 6 + HUVEC cytosol polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 319 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC cytosol polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HUVEC cyt pA- J\ subGroups view=Junctions cellType=t2HUVEC localization=CYTOSOL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHuvecCytosolPamJunctions\ type bed 6 +\ wgEncodeSydhTfbsK562Tblr1ab24550IggrabPk K562 TBLR1 IgR narrowPeak K562 TBLR1 AB24550 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 319 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TBLR1 AB24550 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 TBLR1 IgR\ subGroups view=Peaks factor=TBLR1AB24550 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Tblr1ab24550IggrabPk\ type narrowPeak\ wgEncodeUwTfbsNhdfneoCtcfStdHotspotsRep2 NHDF CTCF Ht 2 broadPeak NHDF-neo CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 319 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel NHDF CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3NHDFNEO rep=rep2 treatment=aNone\ track wgEncodeUwTfbsNhdfneoCtcfStdHotspotsRep2\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_ctss_fwd Tc:ARPE-19Emt_02hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_forward 0 319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep3.CNhs14490.13651-147B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13651-147B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_tpm_fwd Tc:ARPE-19Emt_02hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_forward 1 319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep3.CNhs14490.13651-147B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13651-147B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k27me3Pk CD14+ H3K27m3 broadPeak Monocytes CD14+ H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 320 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Monocytes CD14+ H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD14+ H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k27me3Pk\ type broadPeak\ wgEncodeUwHistoneH7esH3k27me3StdRawRep1 H7ES H3K27M3 Sg 1 bigWig 1.000000 3427.000000 H7-hESC H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 320 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t3H7HESC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneH7esH3k27me3StdRawRep1\ type bigWig 1.000000 3427.000000\ wgEncodeCshlShortRnaSeqHaoec70717061CellTapPlusRep1 HAEC cell TAP + 1 bigWig 1.000000 3336007.000000 HAoEC TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 320 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoEC TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HAEC cell TAP + 1\ subGroups view=PlusSignal cellType=t3HAOEC localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHaoec70717061CellTapPlusRep1\ type bigWig 1.000000 3336007.000000\ wgEncodeRikenCageHaoecCellPapMinusRawRep2 HAoE cell pA+ - 2 bigWig 1.000000 123389.000000 HAoEC whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 320 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoEC whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HAoE cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3HAOEC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHaoecCellPapMinusRawRep2\ type bigWig 1.000000 123389.000000\ wgEncodeAwgTfbsSydhHelas3Tf3c110UniPk HeLa-S3 GTF3C2 narrowPeak HeLa-S3 TFBS Uniform Peaks of TFIIIC-110 from ENCODE/Harvard/Analysis 1 320 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of TFIIIC-110 from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 GTF3C2\ subGroups tier=a20 cellType=a20HELAS3 factor=GTF3C2 lab=Harvard\ track wgEncodeAwgTfbsSydhHelas3Tf3c110UniPk\ wgEncodeHaibTfbsH1hescTead4sc101184V0422111RawRep1 hESC TEAD4 V11 1 bigWig 1.000000 3452.000000 H1-hESC TEAD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 320 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC TEAD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC TEAD4 V11 1\ subGroups view=RawSignal factor=TEAD4SC101184 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescTead4sc101184V0422111RawRep1\ type bigWig 1.000000 3452.000000\ encTfChipPkENCFF282QFS HFF-Myc CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HFF-Myc from ENCODE 3 (ENCFF282QFS) 1 320 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in HFF-Myc from ENCODE 3 (ENCFF282QFS)\ parent encTfChipPk off\ shortLabel HFF-Myc CTCF\ subGroups cellType=HFF-Myc factor=CTCF\ track encTfChipPkENCFF282QFS\ wgEncodeUwDnaseHmecPkRep1 HMEC Pk 1 narrowPeak HMEC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 320 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMEC Pk 1\ subGroups view=Peaks cellType=t3HMEC rep=rep1 treatment=None\ track wgEncodeUwDnaseHmecPkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHuvecCytosolLongnonpolyaMinusRawSigRep3 HUVEC cyt pA- - 1 bigWig 1.000000 7543856.000000 HUVEC cytosol polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 320 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC cytosol polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HUVEC cyt pA- - 1\ subGroups view=MinusSignal cellType=t2HUVEC localization=CYTOSOL rnaExtract=PAM rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecCytosolLongnonpolyaMinusRawSigRep3\ type bigWig 1.000000 7543856.000000\ wgEncodeSydhTfbsK562Tblr1ab24550IggrabSig K562 TBLR1 IgR bigWig 1.000000 19996.000000 K562 TBLR1 AB24550 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 320 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 TBLR1 AB24550 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 TBLR1 IgR\ subGroups view=Signal factor=TBLR1AB24550 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Tblr1ab24550IggrabSig\ type bigWig 1.000000 19996.000000\ wgEncodeUwTfbsNhdfneoCtcfStdPkRep2 NHDF CTCF Pk 2 narrowPeak NHDF-neo CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 320 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel NHDF CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3NHDFNEO rep=rep2 treatment=aNone\ track wgEncodeUwTfbsNhdfneoCtcfStdPkRep2\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_ctss_rev Tc:ARPE-19Emt_02hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_reverse 0 320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep3.CNhs14490.13651-147B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13651-147B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_tpm_rev Tc:ARPE-19Emt_02hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_reverse 1 320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep3.CNhs14490.13651-147B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13651-147B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k27me3Sig CD14+ H3K27m3 bigWig 0.040000 6347.120117 Monocytes CD14+ H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 321 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Monocytes CD14+ H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD14+ H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k27me3Sig\ type bigWig 0.040000 6347.120117\ wgEncodeUwHistoneH7esH3k27me3StdHotspotsRep2 H7ES H3K27M3 Ht 2 broadPeak H7-hESC H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 321 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K27M3 Ht 2\ subGroups view=Hot factor=H3K27ME3 cellType=t3H7HESC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneH7esH3k27me3StdHotspotsRep2\ type broadPeak\ wgEncodeCshlShortRnaSeqHaoec80611021CellTapPlusRep2 HAEC cell TAP + 2 bigWig 1.000000 3765711.000000 HAoEC TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 321 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoEC TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HAEC cell TAP + 2\ subGroups view=PlusSignal cellType=t3HAOEC localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHaoec80611021CellTapPlusRep2\ type bigWig 1.000000 3765711.000000\ wgEncodeRikenCageHaoecCellPapAlnRep1 HAoE cell pA+ A 1 bam HAoEC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 321 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAoEC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HAoE cell pA+ A 1\ subGroups view=Alignments cellType=t3HAOEC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHaoecCellPapAlnRep1\ type bam\ wgEncodeAwgTfbsSydhHelas3Irf3IggrabUniPk HeLa-S3 IRF3 narrowPeak HeLa-S3 TFBS Uniform Peaks of IRF3 from ENCODE/Stanford/Analysis 1 321 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of IRF3 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 IRF3\ subGroups tier=a20 cellType=a20HELAS3 factor=IRF3 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Irf3IggrabUniPk\ wgEncodeHaibTfbsH1hescTead4sc101184V0422111PkRep2 hESC TEAD4 V11 2 broadPeak H1-hESC TEAD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 321 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC TEAD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC TEAD4 V11 2\ subGroups view=Peaks factor=TEAD4SC101184 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescTead4sc101184V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF041ZEP HL-60 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HL-60 from ENCODE 3 (ENCFF041ZEP) 1 321 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in HL-60 from ENCODE 3 (ENCFF041ZEP)\ parent encTfChipPk off\ shortLabel HL-60 CTCF\ subGroups cellType=HL-60 factor=CTCF\ track encTfChipPkENCFF041ZEP\ wgEncodeUwDnaseHmecRawRep1 HMEC Sg 1 bigWig 1.000000 44157.000000 HMEC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 321 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMEC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMEC Sg 1\ subGroups view=zRSig cellType=t3HMEC rep=rep1 treatment=None\ track wgEncodeUwDnaseHmecRawRep1\ type bigWig 1.000000 44157.000000\ wgEncodeCshlLongRnaSeqHuvecCytosolLongnonpolyaPlusRawSigRep3 HUVEC cyt pA- + 1 bigWig 1.000000 13448932.000000 HUVEC cytosol polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 321 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC cytosol polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HUVEC cyt pA- + 1\ subGroups view=PlusSignal cellType=t2HUVEC localization=CYTOSOL rnaExtract=PAM rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecCytosolLongnonpolyaPlusRawSigRep3\ type bigWig 1.000000 13448932.000000\ wgEncodeSydhTfbsK562Tblr1nb600270IggrabPk K562 TBLR1 IgR narrowPeak K562 TBLR1 NB600270 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 321 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TBLR1 NB600270 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 TBLR1 IgR\ subGroups view=Peaks factor=TBLR1NB600270 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Tblr1nb600270IggrabPk\ type narrowPeak\ wgEncodeUwTfbsNhdfneoCtcfStdRawRep2 NHDF CTCF Sg 2 bigWig 1.000000 13883.000000 NHDF-neo CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 321 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHDF-neo CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel NHDF CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3NHDFNEO rep=rep2 treatment=aNone\ track wgEncodeUwTfbsNhdfneoCtcfStdRawRep2\ type bigWig 1.000000 13883.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_ctss_fwd Tc:ARPE-19Emt_03hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_forward 0 321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep1.CNhs14491.13652-147B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13652-147B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_tpm_fwd Tc:ARPE-19Emt_03hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_forward 1 321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep1.CNhs14491.13652-147B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13652-147B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k36me3Pk CD14+ H3K36m3 broadPeak Monocytes CD14+ H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 322 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Monocytes CD14+ H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD14+ H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k36me3Pk\ type broadPeak\ wgEncodeUwHistoneH7esH3k27me3StdPkRep2 H7ES H3K27M3 Pk 2 narrowPeak H7-hESC H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 322 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K27M3 Pk 2\ subGroups view=Peaks factor=H3K27ME3 cellType=t3H7HESC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneH7esH3k27me3StdPkRep2\ type narrowPeak\ wgEncodeRikenCageHaoecCellPapAlnRep2 HAoE cell pA+ A 2 bam HAoEC whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 322 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAoEC whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HAoE cell pA+ A 2\ subGroups view=Alignments cellType=t3HAOEC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHaoecCellPapAlnRep2\ type bam\ wgEncodeCshlShortRnaSeqHchCellTapContigs HCH cell TAP C bed 6 HCH TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 322 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCH TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HCH cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t3HCH localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqHchCellTapContigs\ type bed 6\ wgEncodeAwgTfbsSydhHelas3CjunIggrabUniPk HeLa-S3 JUN narrowPeak HeLa-S3 TFBS Uniform Peaks of c-Jun from ENCODE/Stanford/Analysis 1 322 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of c-Jun from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 JUN\ subGroups tier=a20 cellType=a20HELAS3 factor=JUN lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3CjunIggrabUniPk\ wgEncodeHaibTfbsH1hescTead4sc101184V0422111RawRep2 hESC TEAD4 V11 2 bigWig 1.000000 5585.000000 H1-hESC TEAD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 322 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC TEAD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC TEAD4 V11 2\ subGroups view=RawSignal factor=TEAD4SC101184 cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescTead4sc101184V0422111RawRep2\ type bigWig 1.000000 5585.000000\ encTfChipPkENCFF280GDT HL-60 GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in HL-60 from ENCODE 3 (ENCFF280GDT) 1 322 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GABPA in HL-60 from ENCODE 3 (ENCFF280GDT)\ parent encTfChipPk off\ shortLabel HL-60 GABPA\ subGroups cellType=HL-60 factor=GABPA\ track encTfChipPkENCFF280GDT\ wgEncodeUwDnaseHmecHotspotsRep2 HMEC Ht 2 broadPeak HMEC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 322 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMEC Ht 2\ subGroups view=Hot cellType=t3HMEC rep=rep2 treatment=None\ track wgEncodeUwDnaseHmecHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHuvecCytosolPapAlnRep3 HUVEC cyt pA+ A 1 bam HUVEC cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 322 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HUVEC cyt pA+ A 1\ subGroups view=Alignments cellType=t2HUVEC localization=CYTOSOL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecCytosolPapAlnRep3\ type bam\ wgEncodeSydhTfbsK562Tblr1nb600270IggrabSig K562 TBLR1 IgR bigWig 1.000000 27872.000000 K562 TBLR1 NB600270 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 322 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 TBLR1 NB600270 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 TBLR1 IgR\ subGroups view=Signal factor=TBLR1NB600270 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Tblr1nb600270IggrabSig\ type bigWig 1.000000 27872.000000\ wgEncodeUwTfbsNhdfneoInputStdRawRep1 NHDF In Sg 1 bigWig 1.000000 26277.000000 NHDF-neo Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 322 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHDF-neo Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel NHDF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3NHDFNEO rep=rep1 treatment=aNone\ track wgEncodeUwTfbsNhdfneoInputStdRawRep1\ type bigWig 1.000000 26277.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_ctss_rev Tc:ARPE-19Emt_03hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_reverse 0 322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep1.CNhs14491.13652-147B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13652-147B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_tpm_rev Tc:ARPE-19Emt_03hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_reverse 1 322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep1.CNhs14491.13652-147B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13652-147B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k36me3Sig CD14+ H3K36m3 bigWig 0.040000 15936.120117 Monocytes CD14+ H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 323 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Monocytes CD14+ H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD14+ H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k36me3Sig\ type bigWig 0.040000 15936.120117\ wgEncodeUwHistoneH7esH3k27me3StdRawRep2 H7ES H3K27M3 Sg 2 bigWig 1.000000 6743.000000 H7-hESC H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 323 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K27M3 Sg 2\ subGroups view=zRSig factor=H3K27ME3 cellType=t3H7HESC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneH7esH3k27me3StdRawRep2\ type bigWig 1.000000 6743.000000\ wgEncodeRikenCageHchCellPapTssHmm HCH cell pA+ bed 6 HCH whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 323 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCH whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HCH cell pA+\ subGroups view=TssHmm cellType=t3HCH localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHchCellPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqHch00113082pCellShorttotalTapMinusRep1 HCH cell TAP - 1 bigWig 1.000000 10251913.000000 HCH TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 323 0 0 0 127 127 127 0 0 0 expression 0 longLabel HCH TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HCH cell TAP - 1\ subGroups view=MinusSignal cellType=t3HCH localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHch00113082pCellShorttotalTapMinusRep1\ type bigWig 1.000000 10251913.000000\ wgEncodeAwgTfbsSydhHelas3JundIggrabUniPk HeLa-S3 JUND narrowPeak HeLa-S3 TFBS Uniform Peaks of JunD from ENCODE/Stanford/Analysis 1 323 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of JunD from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 JUND\ subGroups tier=a20 cellType=a20HELAS3 factor=JUND lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3JundIggrabUniPk\ wgEncodeHaibTfbsH1hescUsf1Pcr1xPkRep1 hESC USF1 PCR1 1 broadPeak H1-hESC USF-1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 323 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC USF-1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel hESC USF1 PCR1 1\ subGroups view=Peaks factor=USF1 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescUsf1Pcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF603MCO HL-60 REST narrowPeak Transcription Factor ChIP-seq Peaks of REST in HL-60 from ENCODE 3 (ENCFF603MCO) 1 323 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in HL-60 from ENCODE 3 (ENCFF603MCO)\ parent encTfChipPk off\ shortLabel HL-60 REST\ subGroups cellType=HL-60 factor=REST\ track encTfChipPkENCFF603MCO\ wgEncodeUwDnaseHmecPkRep2 HMEC Pk 2 narrowPeak HMEC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 323 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMEC Pk 2\ subGroups view=Peaks cellType=t3HMEC rep=rep2 treatment=None\ track wgEncodeUwDnaseHmecPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHuvecCytosolPapAlnRep4 HUVEC cyt pA+ A 2 bam HUVEC cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 323 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HUVEC cyt pA+ A 2\ subGroups view=Alignments cellType=t2HUVEC localization=CYTOSOL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqHuvecCytosolPapAlnRep4\ type bam\ wgEncodeSydhTfbsK562TbpIggmusPk K562 TBP IgM narrowPeak K562 TBP IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 323 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TBP IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks on\ shortLabel K562 TBP IgM\ subGroups view=Peaks factor=TBP cellType=t1K562 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsK562TbpIggmusPk\ type narrowPeak\ wgEncodeUwTfbsNhekCtcfStdHotspotsRep1 NHEK CTCF Ht 1 broadPeak NHEK CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 323 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel NHEK CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3NHEK rep=rep1 treatment=aNone\ track wgEncodeUwTfbsNhekCtcfStdHotspotsRep1\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_ctss_fwd Tc:ARPE-19Emt_03hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_forward 0 323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep2.CNhs14492.13653-147B8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13653-147B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_tpm_fwd Tc:ARPE-19Emt_03hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_forward 1 323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep2.CNhs14492.13653-147B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13653-147B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k79me2Pk CD14+ H3K79m2 broadPeak Monocytes CD14+ H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 324 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Monocytes CD14+ H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD14+ H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k79me2Pk\ type broadPeak\ wgEncodeUwHistoneH7esH3k36me3StdDiffa2dHotspotsRep1 H7ES H3K36M3 Ht 1 broadPeak H7-hESC H3K36me3 diffProtA 2 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 324 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 diffProtA 2 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K36M3 Ht 1\ subGroups view=Hot factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep1\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa2dHotspotsRep1\ type broadPeak\ wgEncodeRikenCageHchCellPapPlusRawRep1 HCH cell pA+ + 1 bigWig 1.000000 26784.000000 HCH whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 324 0 0 0 127 127 127 0 0 0 expression 0 longLabel HCH whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HCH cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3HCH localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHchCellPapPlusRawRep1\ type bigWig 1.000000 26784.000000\ wgEncodeCshlShortRnaSeqHch81008082CellShorttotalTapMinusRep2 HCH cell TAP - 2 bigWig 1.000000 9197164.000000 HCH TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 324 0 0 0 127 127 127 0 0 0 expression 0 longLabel HCH TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HCH cell TAP - 2\ subGroups view=MinusSignal cellType=t3HCH localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHch81008082CellShorttotalTapMinusRep2\ type bigWig 1.000000 9197164.000000\ wgEncodeAwgTfbsSydhHelas3MafkIggrabUniPk HeLa-S3 MAFK narrowPeak HeLa-S3 TFBS Uniform Peaks of MafK_(ab50322) from ENCODE/Stanford/Analysis 1 324 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of MafK_(ab50322) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 MAFK\ subGroups tier=a20 cellType=a20HELAS3 factor=MAFK lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3MafkIggrabUniPk\ wgEncodeHaibTfbsH1hescUsf1Pcr1xRawRep1 hESC USF1 PCR1 1 bigWig 0.284424 194.048004 H1-hESC USF-1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 324 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC USF-1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel hESC USF1 PCR1 1\ subGroups view=RawSignal factor=USF1 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescUsf1Pcr1xRawRep1\ type bigWig 0.284424 194.048004\ encTfChipPkENCFF587OBC HL-60 SPI1 narrowPeak Transcription Factor ChIP-seq Peaks of SPI1 in HL-60 from ENCODE 3 (ENCFF587OBC) 1 324 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SPI1 in HL-60 from ENCODE 3 (ENCFF587OBC)\ parent encTfChipPk off\ shortLabel HL-60 SPI1\ subGroups cellType=HL-60 factor=SPI1\ track encTfChipPkENCFF587OBC\ wgEncodeUwDnaseHmecRawRep2 HMEC Sg 2 bigWig 1.000000 79686.000000 HMEC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 324 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMEC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMEC Sg 2\ subGroups view=zRSig cellType=t3HMEC rep=rep2 treatment=None\ track wgEncodeUwDnaseHmecRawRep2\ type bigWig 1.000000 79686.000000\ wgEncodeCshlLongRnaSeqHuvecCytosolPapContigs HUVEC cyt pA+ C bed 6 + HUVEC cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 324 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HUVEC cyt pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HUVEC localization=CYTOSOL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqHuvecCytosolPapContigs\ type bed 6 +\ wgEncodeSydhTfbsK562TbpIggmusSig K562 TBP IgM bigWig 1.000000 74076.000000 K562 TBP IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 324 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 TBP IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal on\ shortLabel K562 TBP IgM\ subGroups view=Signal factor=TBP cellType=t1K562 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsK562TbpIggmusSig\ type bigWig 1.000000 74076.000000\ wgEncodeUwTfbsNhekCtcfStdPkRep1 NHEK CTCF Pk 1 narrowPeak NHEK CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 324 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel NHEK CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3NHEK rep=rep1 treatment=aNone\ track wgEncodeUwTfbsNhekCtcfStdPkRep1\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_ctss_rev Tc:ARPE-19Emt_03hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_reverse 0 324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep2.CNhs14492.13653-147B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13653-147B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_tpm_rev Tc:ARPE-19Emt_03hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_reverse 1 324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep2.CNhs14492.13653-147B8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13653-147B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H3k79me2Sig CD14+ H3K79m2 bigWig 0.040000 6074.080078 Monocytes CD14+ H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 325 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Monocytes CD14+ H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD14+ H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H3k79me2Sig\ type bigWig 0.040000 6074.080078\ wgEncodeUwHistoneH7esH3k36me3StdDiffa2dPkRep1 H7ES H3K36M3 Pk 1 narrowPeak H7-hESC H3K36me3 diffProtA 2 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 325 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 diffProtA 2 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K36M3 Pk 1\ subGroups view=Peaks factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep1\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa2dPkRep1\ type narrowPeak\ wgEncodeRikenCageHchCellPapPlusRawRep2 HCH cell pA+ + 2 bigWig 1.000000 316529.000000 HCH whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 325 0 0 0 127 127 127 0 0 0 expression 0 longLabel HCH whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HCH cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3HCH localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHchCellPapPlusRawRep2\ type bigWig 1.000000 316529.000000\ wgEncodeCshlShortRnaSeqHch00113082pCellShorttotalTapPlusRep1 HCH cell TAP + 1 bigWig 1.000000 10815283.000000 HCH TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 325 0 0 0 127 127 127 0 0 0 expression 0 longLabel HCH TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HCH cell TAP + 1\ subGroups view=PlusSignal cellType=t3HCH localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHch00113082pCellShorttotalTapPlusRep1\ type bigWig 1.000000 10815283.000000\ encTfChipPkENCFF768OPK HeLa-S3 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HeLa-S3 from ENCODE 3 (ENCFF768OPK) 1 325 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in HeLa-S3 from ENCODE 3 (ENCFF768OPK)\ parent encTfChipPk off\ shortLabel HeLa-S3 CTCF\ subGroups cellType=HeLa-S3 factor=CTCF\ track encTfChipPkENCFF768OPK\ wgEncodeAwgTfbsSydhHelas3MaxIggrabUniPk HeLa-S3 MAX narrowPeak HeLa-S3 TFBS Uniform Peaks of Max from ENCODE/Stanford/Analysis 1 325 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of Max from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 MAX\ subGroups tier=a20 cellType=a20HELAS3 factor=MAX lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3MaxIggrabUniPk\ wgEncodeHaibTfbsH1hescUsf1Pcr1xPkRep2 hESC USF1 PCR1 2 broadPeak H1-hESC USF-1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 325 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC USF-1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel hESC USF1 PCR1 2\ subGroups view=Peaks factor=USF1 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescUsf1Pcr1xPkRep2\ type broadPeak\ wgEncodeUwDnaseHmfHotspotsRep1 HMF Ht 1 broadPeak HMF DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 325 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMF DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMF Ht 1\ subGroups view=Hot cellType=t3HMF rep=rep1 treatment=None\ track wgEncodeUwDnaseHmfHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHuvecCytosolPapJunctions HUVEC cyt pA+ J bed 6 + HUVEC cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 325 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HUVEC cyt pA+ J\ subGroups view=Junctions cellType=t2HUVEC localization=CYTOSOL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHuvecCytosolPapJunctions\ type bed 6 +\ wgEncodeSydhTfbsK562Tf3c110StdPk K562 TF3C Std narrowPeak K562 TFIIIC-110 Standard ChIP-seq Peaks from ENCODE/SYDH 3 325 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TFIIIC-110 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 TF3C Std\ subGroups view=Peaks factor=TF3C110 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Tf3c110StdPk\ type narrowPeak\ wgEncodeUwTfbsNhekCtcfStdRawRep1 NHEK CTCF Sg 1 bigWig 1.000000 2291.000000 NHEK CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 325 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel NHEK CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3NHEK rep=rep1 treatment=aNone\ track wgEncodeUwTfbsNhekCtcfStdRawRep1\ type bigWig 1.000000 2291.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_ctss_fwd Tc:ARPE-19Emt_03hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_forward 0 325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep3.CNhs14493.13654-147B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13654-147B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_tpm_fwd Tc:ARPE-19Emt_03hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_forward 1 325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep3.CNhs14493.13654-147B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13654-147B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H4k20me1Pk CD14+ H4K20m1 broadPeak Monocytes CD14+ H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 326 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Monocytes CD14+ H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel CD14+ H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H4k20me1Pk\ type broadPeak\ wgEncodeUwHistoneH7esH3k36me3StdDiffa2dRawRep1 H7ES H3K36M3 Sg 1 bigWig 1.000000 2588.000000 H7-hESC H3K36me3 diffProtA 2 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 326 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K36me3 diffProtA 2 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K36M3 Sg 1\ subGroups view=zRSig factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep1\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa2dRawRep1\ type bigWig 1.000000 2588.000000\ wgEncodeRikenCageHchCellPapMinusRawRep1 HCH cell pA+ - 1 bigWig 1.000000 160519.000000 HCH whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 326 0 0 0 127 127 127 0 0 0 expression 0 longLabel HCH whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HCH cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3HCH localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHchCellPapMinusRawRep1\ type bigWig 1.000000 160519.000000\ wgEncodeCshlShortRnaSeqHch81008082CellShorttotalTapPlusRep2 HCH cell TAP + 2 bigWig 1.000000 6475464.000000 HCH TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 326 0 0 0 127 127 127 0 0 0 expression 0 longLabel HCH TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HCH cell TAP + 2\ subGroups view=PlusSignal cellType=t3HCH localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHch81008082CellShorttotalTapPlusRep2\ type bigWig 1.000000 6475464.000000\ encTfChipPkENCFF751GGI HeLa-S3 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in HeLa-S3 from ENCODE 3 (ENCFF751GGI) 1 326 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel Transcription Factor ChIP-seq Peaks of EZH2 in HeLa-S3 from ENCODE 3 (ENCFF751GGI)\ parent encTfChipPk off\ shortLabel HeLa-S3 EZH2\ subGroups cellType=HeLa-S3 factor=EZH2\ track encTfChipPkENCFF751GGI\ wgEncodeAwgTfbsSydhHelas3Mazab85725IggrabUniPk HeLa-S3 MAZ narrowPeak HeLa-S3 TFBS Uniform Peaks of MAZ_(ab85725) from ENCODE/Stanford/Analysis 1 326 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of MAZ_(ab85725) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 MAZ\ subGroups tier=a20 cellType=a20HELAS3 factor=MAZ lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Mazab85725IggrabUniPk\ wgEncodeHaibTfbsH1hescUsf1Pcr1xRawRep2 hESC USF1 PCR1 2 bigWig 0.266269 191.847000 H1-hESC USF-1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 326 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC USF-1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel hESC USF1 PCR1 2\ subGroups view=RawSignal factor=USF1 cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescUsf1Pcr1xRawRep2\ type bigWig 0.266269 191.847000\ wgEncodeUwDnaseHmfPkRep1 HMF Pk 1 narrowPeak HMF DNaseI HS Peaks Rep 1 from ENCODE/UW 1 326 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMF DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMF Pk 1\ subGroups view=Peaks cellType=t3HMF rep=rep1 treatment=None\ track wgEncodeUwDnaseHmfPkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHuvecCytosolPapMinusRawSigRep3 HUVEC cyt pA+ - 1 bigWig 1.000000 704670.000000 HUVEC cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 326 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HUVEC cyt pA+ - 1\ subGroups view=MinusSignal cellType=t2HUVEC localization=CYTOSOL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecCytosolPapMinusRawSigRep3\ type bigWig 1.000000 704670.000000\ wgEncodeSydhTfbsK562Tf3c110StdSig K562 TF3C Std bigWig 0.000000 9467.500000 K562 TFIIIC-110 Standard ChIP-seq Signal from ENCODE/SYDH 2 326 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 TFIIIC-110 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 TF3C Std\ subGroups view=Signal factor=TF3C110 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Tf3c110StdSig\ type bigWig 0.000000 9467.500000\ wgEncodeUwTfbsNhekCtcfStdHotspotsRep2 NHEK CTCF Ht 2 broadPeak NHEK CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 326 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel NHEK CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3NHEK rep=rep2 treatment=aNone\ track wgEncodeUwTfbsNhekCtcfStdHotspotsRep2\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_ctss_rev Tc:ARPE-19Emt_03hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_reverse 0 326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep3.CNhs14493.13654-147B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13654-147B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_tpm_rev Tc:ARPE-19Emt_03hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_reverse 1 326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep3.CNhs14493.13654-147B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13654-147B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746H4k20me1Sig CD14+ H4K20m1 bigWig 0.040000 9398.959961 Monocytes CD14+ H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 327 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Monocytes CD14+ H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD14+ H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746H4k20me1Sig\ type bigWig 0.040000 9398.959961\ wgEncodeUwHistoneH7esH3k36me3StdDiffa2dHotspotsRep2 H7ES H3K36M3 Ht 2 broadPeak H7-hESC H3K36me3 diffProtA 2 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 327 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 diffProtA 2 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K36M3 Ht 2\ subGroups view=Hot factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep2\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa2dHotspotsRep2\ type broadPeak\ wgEncodeRikenCageHchCellPapMinusRawRep2 HCH cell pA+ - 2 bigWig 1.000000 1903340.000000 HCH whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 327 0 0 0 127 127 127 0 0 0 expression 0 longLabel HCH whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HCH cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3HCH localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHchCellPapMinusRawRep2\ type bigWig 1.000000 1903340.000000\ encTfChipPkENCFF793BVO HeLa-S3 GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in HeLa-S3 from ENCODE 3 (ENCFF793BVO) 1 327 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel Transcription Factor ChIP-seq Peaks of GABPA in HeLa-S3 from ENCODE 3 (ENCFF793BVO)\ parent encTfChipPk off\ shortLabel HeLa-S3 GABPA\ subGroups cellType=HeLa-S3 factor=GABPA\ track encTfChipPkENCFF793BVO\ wgEncodeAwgTfbsSydhHelas3Mxi1af4185IggrabUniPk HeLa-S3 MXI1 narrowPeak HeLa-S3 TFBS Uniform Peaks of Mxi1_(AF4185) from ENCODE/Stanford/Analysis 1 327 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of Mxi1_(AF4185) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 MXI1\ subGroups tier=a20 cellType=a20HELAS3 factor=MXI1 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Mxi1af4185IggrabUniPk\ wgEncodeHaibTfbsH1hescYy1sc281V0416102PkRep1 hESC YY1 V102 1 broadPeak H1-hESC YY1 281 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 327 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC YY1 281 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC YY1 V102 1\ subGroups view=Peaks factor=YY1SC281 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescYy1sc281V0416102PkRep1\ type broadPeak\ wgEncodeCshlShortRnaSeqHfdpcCellTapContigs HFDC cell TAP C bed 6 HFDPC TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 327 0 0 0 127 127 127 0 0 0 expression 1 longLabel HFDPC TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HFDC cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t3HFDPC localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqHfdpcCellTapContigs\ type bed 6\ wgEncodeUwDnaseHmfRawRep1 HMF Sg 1 bigWig 1.000000 30258.000000 HMF DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 327 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMF DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMF Sg 1\ subGroups view=zRSig cellType=t3HMF rep=rep1 treatment=None\ track wgEncodeUwDnaseHmfRawRep1\ type bigWig 1.000000 30258.000000\ wgEncodeCshlLongRnaSeqHuvecCytosolPapMinusRawSigRep4 HUVEC cyt pA+ - 2 bigWig 1.000000 676971.000000 HUVEC cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 327 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HUVEC cyt pA+ - 2\ subGroups view=MinusSignal cellType=t2HUVEC localization=CYTOSOL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqHuvecCytosolPapMinusRawSigRep4\ type bigWig 1.000000 676971.000000\ wgEncodeSydhTfbsK562Tr4UcdPk K562 TR4 UCD narrowPeak K562 TR4 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 327 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TR4 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 TR4 UCD\ subGroups view=Peaks factor=TR4 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Tr4UcdPk\ type narrowPeak\ wgEncodeUwTfbsNhekCtcfStdPkRep2 NHEK CTCF Pk 2 narrowPeak NHEK CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 327 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel NHEK CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3NHEK rep=rep2 treatment=aNone\ track wgEncodeUwTfbsNhekCtcfStdPkRep2\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_ctss_fwd Tc:ARPE-19Emt_03hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_forward 0 327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep1.CNhs14494.13655-147C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13655-147C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_tpm_fwd Tc:ARPE-19Emt_03hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_forward 1 327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep1.CNhs14494.13655-147C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13655-147C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneMonocd14ro1746ControlSig CD14+ Control bigWig 0.040000 746.119995 Monocytes CD14+ Control Histone Mods by ChIPseq Signal from ENCODE/Broad 2 328 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Monocytes CD14+ Control Histone Mods by ChIPseq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel CD14+ Control\ subGroups view=Signal factor=zCTRL cellType=t2MONOCYTESCD14RO01746 treatment=zNONE\ track wgEncodeBroadHistoneMonocd14ro1746ControlSig\ type bigWig 0.040000 746.119995\ wgEncodeUwHistoneH7esH3k36me3StdDiffa2dPkRep2 H7ES H3K36M3 Pk 2 narrowPeak H7-hESC H3K36me3 diffProtA 2 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 328 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 diffProtA 2 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K36M3 Pk 2\ subGroups view=Peaks factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep2\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa2dPkRep2\ type narrowPeak\ wgEncodeRikenCageHchCellPapAlnRep1 HCH cell pA+ A 1 bam HCH whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 328 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCH whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HCH cell pA+ A 1\ subGroups view=Alignments cellType=t3HCH localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHchCellPapAlnRep1\ type bam\ encTfChipPkENCFF411BAO HeLa-S3 MAFF narrowPeak Transcription Factor ChIP-seq Peaks of MAFF in HeLa-S3 from ENCODE 3 (ENCFF411BAO) 1 328 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel Transcription Factor ChIP-seq Peaks of MAFF in HeLa-S3 from ENCODE 3 (ENCFF411BAO)\ parent encTfChipPk off\ shortLabel HeLa-S3 MAFF\ subGroups cellType=HeLa-S3 factor=MAFF\ track encTfChipPkENCFF411BAO\ wgEncodeAwgTfbsUtaHelas3CmycUniPk HeLa-S3 MYC t narrowPeak HeLa-S3 TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis 1 328 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 MYC t\ subGroups tier=a20 cellType=a20HELAS3 factor=MYC lab=UT-A\ track wgEncodeAwgTfbsUtaHelas3CmycUniPk\ wgEncodeHaibTfbsH1hescYy1sc281V0416102RawRep1 hESC YY1 V102 1 bigWig 0.159816 149.188004 H1-hESC YY1 281 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 328 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC YY1 281 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC YY1 V102 1\ subGroups view=RawSignal factor=YY1SC281 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescYy1sc281V0416102RawRep1\ type bigWig 0.159816 149.188004\ wgEncodeCshlShortRnaSeqHfdpc01027033CellTapMinusRep1 HFDC cell TAP - 1 bigWig 1.000000 7300360.000000 HFDPC TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 328 0 0 0 127 127 127 0 0 0 expression 0 longLabel HFDPC TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HFDC cell TAP - 1\ subGroups view=MinusSignal cellType=t3HFDPC localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHfdpc01027033CellTapMinusRep1\ type bigWig 1.000000 7300360.000000\ wgEncodeUwDnaseHmfHotspotsRep2 HMF Ht 2 broadPeak HMF DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 328 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMF DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMF Ht 2\ subGroups view=Hot cellType=t3HMF rep=rep2 treatment=None\ track wgEncodeUwDnaseHmfHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHuvecCytosolPapPlusRawSigRep3 HUVEC cyt pA+ + 1 bigWig 1.000000 728088.000000 HUVEC cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 328 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HUVEC cyt pA+ + 1\ subGroups view=PlusSignal cellType=t2HUVEC localization=CYTOSOL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecCytosolPapPlusRawSigRep3\ type bigWig 1.000000 728088.000000\ wgEncodeSydhTfbsK562Tr4UcdSig K562 TR4 UCD bigWig 0.000000 14908.500000 K562 TR4 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 328 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 TR4 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 TR4 UCD\ subGroups view=Signal factor=TR4 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Tr4UcdSig\ type bigWig 0.000000 14908.500000\ wgEncodeUwTfbsNhekCtcfStdRawRep2 NHEK CTCF Sg 2 bigWig 1.000000 4245.000000 NHEK CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 328 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel NHEK CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3NHEK rep=rep2 treatment=aNone\ track wgEncodeUwTfbsNhekCtcfStdRawRep2\ type bigWig 1.000000 4245.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_ctss_rev Tc:ARPE-19Emt_03hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_reverse 0 328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep1.CNhs14494.13655-147C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13655-147C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_tpm_rev Tc:ARPE-19Emt_03hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_reverse 1 328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep1.CNhs14494.13655-147C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13655-147C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41CtcfPk Dnd41 CTCF broadPeak Dnd41 CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 329 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Dnd41 CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Dnd41 CTCF\ subGroups view=Peaks factor=CTCF cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41CtcfPk\ type broadPeak\ wgEncodeUwHistoneH7esH3k36me3StdDiffa2dRawRep2 H7ES H3K36M3 Sg 2 bigWig 1.000000 10143.000000 H7-hESC H3K36me3 diffProtA 2 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 329 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K36me3 diffProtA 2 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K36M3 Sg 2\ subGroups view=zRSig factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA02D rep=rep2\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa2dRawRep2\ type bigWig 1.000000 10143.000000\ wgEncodeRikenCageHchCellPapAlnRep2 HCH cell pA+ A 2 bam HCH whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 329 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCH whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HCH cell pA+ A 2\ subGroups view=Alignments cellType=t3HCH localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHchCellPapAlnRep2\ type bam\ encTfChipPkENCFF405BKG HeLa-S3 MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in HeLa-S3 from ENCODE 3 (ENCFF405BKG) 1 329 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in HeLa-S3 from ENCODE 3 (ENCFF405BKG)\ parent encTfChipPk off\ shortLabel HeLa-S3 MAFK\ subGroups cellType=HeLa-S3 factor=MAFK\ track encTfChipPkENCFF405BKG\ wgEncodeAwgTfbsSydhHelas3CmycUniPk HeLa-S3 MYC y narrowPeak HeLa-S3 TFBS Uniform Peaks of c-Myc from ENCODE/Yale/Analysis 1 329 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of c-Myc from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 MYC y\ subGroups tier=a20 cellType=a20HELAS3 factor=MYC lab=Yale\ track wgEncodeAwgTfbsSydhHelas3CmycUniPk\ wgEncodeHaibTfbsH1hescYy1sc281V0416102PkRep2 hESC YY1 V102 2 broadPeak H1-hESC YY1 281 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 329 0 107 27 127 181 141 0 0 0 regulation 1 color 0,107,27\ longLabel H1-hESC YY1 281 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel hESC YY1 V102 2\ subGroups view=Peaks factor=YY1SC281 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescYy1sc281V0416102PkRep2\ type broadPeak\ wgEncodeCshlShortRnaSeqHfdpc01005032CellTapMinusRep2 HFDC cell TAP - 2 bigWig 1.000000 6959560.000000 HFDPC TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 329 0 0 0 127 127 127 0 0 0 expression 0 longLabel HFDPC TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HFDC cell TAP - 2\ subGroups view=MinusSignal cellType=t3HFDPC localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHfdpc01005032CellTapMinusRep2\ type bigWig 1.000000 6959560.000000\ wgEncodeUwDnaseHmfPkRep2 HMF Pk 2 narrowPeak HMF DNaseI HS Peaks Rep 2 from ENCODE/UW 1 329 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMF DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMF Pk 2\ subGroups view=Peaks cellType=t3HMF rep=rep2 treatment=None\ track wgEncodeUwDnaseHmfPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHuvecCytosolPapPlusRawSigRep4 HUVEC cyt pA+ + 2 bigWig 1.000000 1099648.000000 HUVEC cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 329 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HUVEC cyt pA+ + 2\ subGroups view=PlusSignal cellType=t2HUVEC localization=CYTOSOL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqHuvecCytosolPapPlusRawSigRep4\ type bigWig 1.000000 1099648.000000\ wgEncodeSydhTfbsK562Ubfsc13125IggmusPk K562 UBF IgM narrowPeak K562 UBF IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 329 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 UBF IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 UBF IgM\ subGroups view=Peaks factor=UBFSC13125 cellType=t1K562 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsK562Ubfsc13125IggmusPk\ type narrowPeak\ wgEncodeUwTfbsNhekInputStdRawRep1 NHEK In Sg 1 bigWig 1.000000 11841.000000 NHEK Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 329 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel NHEK In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3NHEK rep=rep1 treatment=aNone\ track wgEncodeUwTfbsNhekInputStdRawRep1\ type bigWig 1.000000 11841.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_ctss_fwd Tc:ARPE-19Emt_03hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_forward 0 329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep2.CNhs14495.13656-147C2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13656-147C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_tpm_fwd Tc:ARPE-19Emt_03hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_forward 1 329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep2.CNhs14495.13656-147C2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13656-147C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41CtcfSig Dnd41 CTCF bigWig 0.040000 43572.199219 Dnd41 CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 330 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Dnd41 CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Dnd41 CTCF\ subGroups view=Signal factor=CTCF cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41CtcfSig\ type bigWig 0.040000 43572.199219\ wgEncodeUwHistoneH7esH3k36me3StdDiffa5dHotspotsRep1 H7ES H3K36M3 Ht 1 broadPeak H7-hESC H3K36me3 diffProtA 5 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 330 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 diffProtA 5 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K36M3 Ht 1\ subGroups view=Hot factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep1\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa5dHotspotsRep1\ type broadPeak\ encTfChipPkENCFF712LMP HeLa-S3 NFE2L2 narrowPeak Transcription Factor ChIP-seq Peaks of NFE2L2 in HeLa-S3 from ENCODE 3 (ENCFF712LMP) 1 330 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel Transcription Factor ChIP-seq Peaks of NFE2L2 in HeLa-S3 from ENCODE 3 (ENCFF712LMP)\ parent encTfChipPk off\ shortLabel HeLa-S3 NFE2L2\ subGroups cellType=HeLa-S3 factor=NFE2L2\ track encTfChipPkENCFF712LMP\ wgEncodeAwgTfbsSydhHelas3NfyaIggrabUniPk HeLa-S3 NFYA narrowPeak HeLa-S3 TFBS Uniform Peaks of NF-YA from ENCODE/Harvard/Analysis 1 330 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of NF-YA from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 NFYA\ subGroups tier=a20 cellType=a20HELAS3 factor=NFYA lab=Harvard\ track wgEncodeAwgTfbsSydhHelas3NfyaIggrabUniPk\ wgEncodeHaibTfbsH1hescYy1sc281V0416102RawRep2 hESC YY1 V102 2 bigWig 0.317099 142.376999 H1-hESC YY1 281 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 330 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC YY1 281 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC YY1 V102 2\ subGroups view=RawSignal factor=YY1SC281 cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescYy1sc281V0416102RawRep2\ type bigWig 0.317099 142.376999\ wgEncodeCshlShortRnaSeqHfdpc01027033CellTapPlusRep1 HFDC cell TAP + 1 bigWig 1.000000 10346878.000000 HFDPC TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 330 0 0 0 127 127 127 0 0 0 expression 0 longLabel HFDPC TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HFDC cell TAP + 1\ subGroups view=PlusSignal cellType=t3HFDPC localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHfdpc01027033CellTapPlusRep1\ type bigWig 1.000000 10346878.000000\ wgEncodeRikenCageHfdpcCellPapTssHmm HFDP cell pA+ bed 6 HFDPC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 330 0 0 0 127 127 127 0 0 0 expression 1 longLabel HFDPC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HFDP cell pA+\ subGroups view=TssHmm cellType=t3HFDPC localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHfdpcCellPapTssHmm\ type bed 6\ wgEncodeUwDnaseHmfRawRep2 HMF Sg 2 bigWig 1.000000 24459.000000 HMF DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 330 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMF DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMF Sg 2\ subGroups view=zRSig cellType=t3HMF rep=rep2 treatment=None\ track wgEncodeUwDnaseHmfRawRep2\ type bigWig 1.000000 24459.000000\ wgEncodeCshlLongRnaSeqHuvecNucleusLongnonpolyaAlnRep3 HUVEC nuc pA- A 1 bam HUVEC nucleus polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 330 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC nucleus polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HUVEC nuc pA- A 1\ subGroups view=Alignments cellType=t2HUVEC localization=NUCLEUS rnaExtract=PAM rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecNucleusLongnonpolyaAlnRep3\ type bam\ wgEncodeSydhTfbsK562Ubfsc13125IggmusSig K562 UBF IgM bigWig 1.000000 264863.000000 K562 UBF IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 330 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 UBF IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 UBF IgM\ subGroups view=Signal factor=UBFSC13125 cellType=t1K562 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsK562Ubfsc13125IggmusSig\ type bigWig 1.000000 264863.000000\ wgEncodeUwTfbsNhlfCtcfStdHotspotsRep1 NHLF CTCF Ht 1 broadPeak NHLF CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 330 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHLF CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel NHLF CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3NHLF treatment=aNone rep=rep1\ track wgEncodeUwTfbsNhlfCtcfStdHotspotsRep1\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_ctss_rev Tc:ARPE-19Emt_03hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_reverse 0 330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep2.CNhs14495.13656-147C2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13656-147C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_tpm_rev Tc:ARPE-19Emt_03hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_reverse 1 330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep2.CNhs14495.13656-147C2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13656-147C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41Ezh239875Pk Dnd41 EZH2 broadPeak Dnd41 EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 331 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Dnd41 EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Dnd41 EZH2\ subGroups view=Peaks factor=EZH239875 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41Ezh239875Pk\ type broadPeak\ wgEncodeUwHistoneH7esH3k36me3StdDiffa5dPkRep1 H7ES H3K36M3 Pk 1 narrowPeak H7-hESC H3K36me3 diffProtA 5 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 331 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 diffProtA 5 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K36M3 Pk 1\ subGroups view=Peaks factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep1\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa5dPkRep1\ type narrowPeak\ wgEncodeAwgTfbsSydhHelas3NfybIggrabUniPk HeLa-S3 NFYB narrowPeak HeLa-S3 TFBS Uniform Peaks of NF-YB from ENCODE/Harvard/Analysis 1 331 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of NF-YB from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 NFYB\ subGroups tier=a20 cellType=a20HELAS3 factor=NFYB lab=Harvard\ track wgEncodeAwgTfbsSydhHelas3NfybIggrabUniPk\ encTfChipPkENCFF417LLT HeLa-S3 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in HeLa-S3 from ENCODE 3 (ENCFF417LLT) 1 331 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in HeLa-S3 from ENCODE 3 (ENCFF417LLT)\ parent encTfChipPk off\ shortLabel HeLa-S3 POLR2A\ subGroups cellType=HeLa-S3 factor=POLR2A\ track encTfChipPkENCFF417LLT\ wgEncodeHaibTfbsH1hescRxlchPcr1xRawRep1 hESC RvXL PCR1 1 bigWig 0.322043 111.587997 H1-hESC Control PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 331 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Control PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC RvXL PCR1 1\ subGroups view=RawSignal factor=zRXLCH cellType=t1H1HESC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescRxlchPcr1xRawRep1\ type bigWig 0.322043 111.587997\ wgEncodeCshlShortRnaSeqHfdpc01005032CellTapPlusRep2 HFDC cell TAP + 2 bigWig 1.000000 8562871.000000 HFDPC TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 331 0 0 0 127 127 127 0 0 0 expression 0 longLabel HFDPC TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HFDC cell TAP + 2\ subGroups view=PlusSignal cellType=t3HFDPC localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHfdpc01005032CellTapPlusRep2\ type bigWig 1.000000 8562871.000000\ wgEncodeRikenCageHfdpcCellPapPlusRawRep1 HFDP cell pA+ + 1 bigWig 1.000000 181563.000000 HFDPC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 331 0 0 0 127 127 127 0 0 0 expression 0 longLabel HFDPC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HFDP cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3HFDPC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHfdpcCellPapPlusRawRep1\ type bigWig 1.000000 181563.000000\ wgEncodeUwDnaseHmvecdadHotspotsRep1 HMVECdAd Ht 1 broadPeak HMVEC-dAd DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 331 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dAd DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMVECdAd Ht 1\ subGroups view=Hot cellType=t3HMVECDAD rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdadHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHuvecNucleusLongnonpolyaAlnRep4 HUVEC nuc pA- A 2 bam HUVEC nucleus polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 331 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC nucleus polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HUVEC nuc pA- A 2\ subGroups view=Alignments cellType=t2HUVEC localization=NUCLEUS rnaExtract=PAM rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqHuvecNucleusLongnonpolyaAlnRep4\ type bam\ wgEncodeSydhTfbsK562Ubtfsab1404509IggmusPk K562 UBTF IgM narrowPeak K562 UBTF IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 331 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 UBTF IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 UBTF IgM\ subGroups view=Peaks factor=UBTFSAB1404509 cellType=t1K562 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsK562Ubtfsab1404509IggmusPk\ type narrowPeak\ wgEncodeUwTfbsNhlfCtcfStdPkRep1 NHLF CTCF Pk 1 narrowPeak NHLF CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 331 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHLF CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel NHLF CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3NHLF treatment=aNone rep=rep1\ track wgEncodeUwTfbsNhlfCtcfStdPkRep1\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_ctss_fwd Tc:ARPE-19Emt_03hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_forward 0 331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep3.CNhs14496.13657-147C3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13657-147C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_tpm_fwd Tc:ARPE-19Emt_03hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_forward 1 331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep3.CNhs14496.13657-147C3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13657-147C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41Ezh239875Sig Dnd41 EZH2 bigWig 0.040000 42330.121094 Dnd41 EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 332 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Dnd41 EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Dnd41 EZH2\ subGroups view=Signal factor=EZH239875 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41Ezh239875Sig\ type bigWig 0.040000 42330.121094\ wgEncodeUwHistoneH7esH3k36me3StdDiffa5dRawRep1 H7ES H3K36M3 Sg 1 bigWig 1.000000 5955.000000 H7-hESC H3K36me3 diffProtA 5 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 332 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K36me3 diffProtA 5 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K36M3 Sg 1\ subGroups view=zRSig factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep1\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa5dRawRep1\ type bigWig 1.000000 5955.000000\ wgEncodeAwgTfbsSydhHelas3Tr4UniPk HeLa-S3 NR2C2 narrowPeak HeLa-S3 TFBS Uniform Peaks of TR4 from ENCODE/USC/Analysis 1 332 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of TR4 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 NR2C2\ subGroups tier=a20 cellType=a20HELAS3 factor=NR2C2 lab=USC\ track wgEncodeAwgTfbsSydhHelas3Tr4UniPk\ encTfChipPkENCFF932CSV HeLa-S3 REST narrowPeak Transcription Factor ChIP-seq Peaks of REST in HeLa-S3 from ENCODE 3 (ENCFF932CSV) 1 332 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel Transcription Factor ChIP-seq Peaks of REST in HeLa-S3 from ENCODE 3 (ENCFF932CSV)\ parent encTfChipPk off\ shortLabel HeLa-S3 REST\ subGroups cellType=HeLa-S3 factor=REST\ track encTfChipPkENCFF932CSV\ wgEncodeHaibTfbsH1hescRxlchV0416102RawRep1 hESC RvXL V102 1 bigWig 0.100579 178.729004 H1-hESC Control v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 332 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Control v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC RvXL V102 1\ subGroups view=RawSignal factor=zRXLCH cellType=t1H1HESC protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescRxlchV0416102RawRep1\ type bigWig 0.100579 178.729004\ wgEncodeRikenCageHfdpcCellPapPlusRawRep2 HFDP cell pA+ + 2 bigWig 1.000000 11953.000000 HFDPC whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 332 0 0 0 127 127 127 0 0 0 expression 0 longLabel HFDPC whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HFDP cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3HFDPC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHfdpcCellPapPlusRawRep2\ type bigWig 1.000000 11953.000000\ wgEncodeCshlShortRnaSeqHmepcCellTapContigs HMEC cell TAP C bed 6 HMEpC TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 332 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMEpC TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HMEC cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t3HMEPC localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqHmepcCellTapContigs\ type bed 6\ wgEncodeUwDnaseHmvecdadPkRep1 HMVECdAd Pk 1 narrowPeak HMVEC-dAd DNaseI HS Peaks Rep 1 from ENCODE/UW 1 332 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dAd DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMVECdAd Pk 1\ subGroups view=Peaks cellType=t3HMVECDAD rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdadPkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHuvecNucleusPamContigs HUVEC nuc pA- C bed 6 + HUVEC nucleus polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 332 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC nucleus polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HUVEC nuc pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HUVEC localization=NUCLEUS rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqHuvecNucleusPamContigs\ type bed 6 +\ wgEncodeSydhTfbsK562Ubtfsab1404509IggmusSig K562 UBTF IgM bigWig 1.000000 380396.000000 K562 UBTF IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 332 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 UBTF IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 UBTF IgM\ subGroups view=Signal factor=UBTFSAB1404509 cellType=t1K562 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsK562Ubtfsab1404509IggmusSig\ type bigWig 1.000000 380396.000000\ wgEncodeUwTfbsNhlfCtcfStdRawRep1 NHLF CTCF Sg 1 bigWig 1.000000 20802.000000 NHLF CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 332 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHLF CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel NHLF CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3NHLF treatment=aNone rep=rep1\ track wgEncodeUwTfbsNhlfCtcfStdRawRep1\ type bigWig 1.000000 20802.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_ctss_rev Tc:ARPE-19Emt_03hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_reverse 0 332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep3.CNhs14496.13657-147C3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13657-147C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_tpm_rev Tc:ARPE-19Emt_03hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_reverse 1 332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep3.CNhs14496.13657-147C3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13657-147C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H2azPk Dnd41 H2A.Z broadPeak Dnd41 H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 333 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Dnd41 H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Dnd41 H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H2azPk\ type broadPeak\ wgEncodeUwHistoneH7esH3k36me3StdDiffa5dHotspotsRep2 H7ES H3K36M3 Ht 2 broadPeak H7-hESC H3K36me3 diffProtA 5 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 333 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 diffProtA 5 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K36M3 Ht 2\ subGroups view=Hot factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep2\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa5dHotspotsRep2\ type broadPeak\ wgEncodeAwgTfbsSydhHelas3Nrf1IggmusUniPk HeLa-S3 NRF1 narrowPeak HeLa-S3 TFBS Uniform Peaks of Nrf1 from ENCODE/Stanford/Analysis 1 333 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of Nrf1 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 NRF1\ subGroups tier=a20 cellType=a20HELAS3 factor=NRF1 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Nrf1IggmusUniPk\ encTfChipPkENCFF365ICU HeLa-S3 SREBF2 narrowPeak Transcription Factor ChIP-seq Peaks of SREBF2 in HeLa-S3 from ENCODE 3 (ENCFF365ICU) 1 333 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel Transcription Factor ChIP-seq Peaks of SREBF2 in HeLa-S3 from ENCODE 3 (ENCFF365ICU)\ parent encTfChipPk off\ shortLabel HeLa-S3 SREBF2\ subGroups cellType=HeLa-S3 factor=SREBF2\ track encTfChipPkENCFF365ICU\ wgEncodeHaibTfbsH1hescRxlchV0422111RawRep1 hESC RvXL V11 1 bigWig 0.081923 204.009003 H1-hESC Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 333 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC RvXL V11 1\ subGroups view=RawSignal factor=zRXLCH cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1hescRxlchV0422111RawRep1\ type bigWig 0.081923 204.009003\ wgEncodeRikenCageHfdpcCellPapMinusRawRep1 HFDP cell pA+ - 1 bigWig 1.000000 297676.000000 HFDPC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 333 0 0 0 127 127 127 0 0 0 expression 0 longLabel HFDPC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HFDP cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3HFDPC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHfdpcCellPapMinusRawRep1\ type bigWig 1.000000 297676.000000\ wgEncodeCshlShortRnaSeqHmepcCellTapMinusRep1 HMEC cell TAP - 1 bigWig 1.000000 8067777.000000 HMEpC TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 333 0 0 0 127 127 127 0 0 0 expression 0 longLabel HMEpC TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HMEC cell TAP - 1\ subGroups view=MinusSignal cellType=t3HMEPC localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHmepcCellTapMinusRep1\ type bigWig 1.000000 8067777.000000\ wgEncodeUwDnaseHmvecdadRawRep1 HMVECdAd Sg 1 bigWig 1.000000 18524.000000 HMVEC-dAd DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 333 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dAd DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMVECdAd Sg 1\ subGroups view=zRSig cellType=t3HMVECDAD rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdadRawRep1\ type bigWig 1.000000 18524.000000\ wgEncodeCshlLongRnaSeqHuvecNucleusPamJunctions HUVEC nuc pA- J bed 6 + HUVEC nucleus polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 333 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC nucleus polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HUVEC nuc pA- J\ subGroups view=Junctions cellType=t2HUVEC localization=NUCLEUS rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHuvecNucleusPamJunctions\ type bed 6 +\ wgEncodeSydhTfbsK562Usf2IggrabPk K562 USF2 IgR narrowPeak K562 USF2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 333 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 USF2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 USF2 IgR\ subGroups view=Peaks factor=USF2 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Usf2IggrabPk\ type narrowPeak\ wgEncodeUwTfbsNhlfInputStdRawRep1 NHLF In Sg 1 bigWig 1.000000 29301.000000 NHLF Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 333 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHLF Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel NHLF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3NHLF rep=rep1 treatment=aNone\ track wgEncodeUwTfbsNhlfInputStdRawRep1\ type bigWig 1.000000 29301.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_ctss_fwd Tc:ARPE-19Emt_04hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_forward 0 333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep1.CNhs14497.13658-147C4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13658-147C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_tpm_fwd Tc:ARPE-19Emt_04hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_forward 1 333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep1.CNhs14497.13658-147C4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13658-147C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H2azSig Dnd41 H2A.Z bigWig 0.040000 35916.160156 Dnd41 H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 334 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Dnd41 H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Dnd41 H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H2azSig\ type bigWig 0.040000 35916.160156\ wgEncodeUwHistoneH7esH3k36me3StdDiffa5dPkRep2 H7ES H3K36M3 Pk 2 narrowPeak H7-hESC H3K36me3 diffProtA 5 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 334 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 diffProtA 5 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K36M3 Pk 2\ subGroups view=Peaks factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep2\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa5dPkRep2\ type narrowPeak\ wgEncodeAwgTfbsBroadHelas3Pol2bUniPk HeLa-S3 POLR2A b narrowPeak HeLa-S3 TFBS Uniform Peaks of Pol2(b) from ENCODE/Broad/Analysis 1 334 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of Pol2(b) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 POLR2A b\ subGroups tier=a20 cellType=a20HELAS3 factor=POLR2A lab=Broad\ track wgEncodeAwgTfbsBroadHelas3Pol2bUniPk\ encTfChipPkENCFF612ASR HeLa-S3 SUPT20H narrowPeak Transcription Factor ChIP-seq Peaks of SUPT20H in HeLa-S3 from ENCODE 3 (ENCFF612ASR) 1 334 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel Transcription Factor ChIP-seq Peaks of SUPT20H in HeLa-S3 from ENCODE 3 (ENCFF612ASR)\ parent encTfChipPk off\ shortLabel HeLa-S3 SUPT20H\ subGroups cellType=HeLa-S3 factor=SUPT20H\ track encTfChipPkENCFF612ASR\ wgEncodeHaibTfbsH1hescRxlchV0422111RawRep2 hESC RvXL V11 2 bigWig 1.000000 4675.000000 H1-hESC Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 334 0 107 27 127 181 141 0 0 0 regulation 0 color 0,107,27\ longLabel H1-hESC Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel hESC RvXL V11 2\ subGroups view=RawSignal factor=zRXLCH cellType=t1H1HESC protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1hescRxlchV0422111RawRep2\ type bigWig 1.000000 4675.000000\ wgEncodeRikenCageHfdpcCellPapMinusRawRep2 HFDP cell pA+ - 2 bigWig 1.000000 32954.000000 HFDPC whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 334 0 0 0 127 127 127 0 0 0 expression 0 longLabel HFDPC whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HFDP cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3HFDPC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHfdpcCellPapMinusRawRep2\ type bigWig 1.000000 32954.000000\ wgEncodeCshlShortRnaSeqHmepcCellTapPlusRep1 HMEC cell TAP + 1 bigWig 1.000000 14128431.000000 HMEpC TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 334 0 0 0 127 127 127 0 0 0 expression 0 longLabel HMEpC TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HMEC cell TAP + 1\ subGroups view=PlusSignal cellType=t3HMEPC localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHmepcCellTapPlusRep1\ type bigWig 1.000000 14128431.000000\ wgEncodeUwDnaseHmvecdadHotspotsRep2 HMVECdAd Ht 2 broadPeak HMVEC-dAd DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 334 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dAd DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMVECdAd Ht 2\ subGroups view=Hot cellType=t3HMVECDAD rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdadHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHuvecNucleusLongnonpolyaMinusRawSigRep3 HUVEC nuc pA- - 1 bigWig 1.000000 2390083.000000 HUVEC nucleus polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 334 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC nucleus polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HUVEC nuc pA- - 1\ subGroups view=MinusSignal cellType=t2HUVEC localization=NUCLEUS rnaExtract=PAM rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecNucleusLongnonpolyaMinusRawSigRep3\ type bigWig 1.000000 2390083.000000\ wgEncodeSydhTfbsK562Usf2IggrabSig K562 USF2 IgR bigWig 0.000000 15252.900391 K562 USF2 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 334 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 USF2 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 USF2 IgR\ subGroups view=Signal factor=USF2 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Usf2IggrabSig\ type bigWig 0.000000 15252.900391\ wgEncodeUwTfbsPanc1InputStdRawRep1 PANC In Sg 1 bigWig 1.000000 22326.000000 PANC-1 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 334 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel PANC In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3PANC1 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsPanc1InputStdRawRep1\ type bigWig 1.000000 22326.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_ctss_rev Tc:ARPE-19Emt_04hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_reverse 0 334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep1.CNhs14497.13658-147C4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13658-147C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_tpm_rev Tc:ARPE-19Emt_04hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_reverse 1 334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep1.CNhs14497.13658-147C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13658-147C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k04me1Pk Dnd41 H3K4m1 broadPeak Dnd41 H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 335 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Dnd41 H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Dnd41 H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k04me1Pk\ type broadPeak\ wgEncodeUwHistoneH7esH3k36me3StdDiffa5dRawRep2 H7ES H3K36M3 Sg 2 bigWig 1.000000 6807.000000 H7-hESC H3K36me3 diffProtA 5 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 335 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K36me3 diffProtA 5 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K36M3 Sg 2\ subGroups view=zRSig factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA05D rep=rep2\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa5dRawRep2\ type bigWig 1.000000 6807.000000\ wgEncodeAwgTfbsHaibHelas3Pol2Pcr1xUniPk HeLa-S3 POLR2A h narrowPeak HeLa-S3 TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis 1 335 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel HeLa-S3 POLR2A h\ subGroups tier=a20 cellType=a20HELAS3 factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHelas3Pol2Pcr1xUniPk\ encTfChipPkENCFF305QDB HeLa-S3 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in HeLa-S3 from ENCODE 3 (ENCFF305QDB) 1 335 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel Transcription Factor ChIP-seq Peaks of TAF1 in HeLa-S3 from ENCODE 3 (ENCFF305QDB)\ parent encTfChipPk off\ shortLabel HeLa-S3 TAF1\ subGroups cellType=HeLa-S3 factor=TAF1\ track encTfChipPkENCFF305QDB\ wgEncodeRikenCageHfdpcCellPapAlnRep1 HFDP cell pA+ A 1 bam HFDPC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 335 0 0 0 127 127 127 0 0 0 expression 1 longLabel HFDPC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HFDP cell pA+ A 1\ subGroups view=Alignments cellType=t3HFDPC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHfdpcCellPapAlnRep1\ type bam\ wgEncodeCshlShortRnaSeqHmscatCellTapContigs hMAT cell TAP C bed 6 hMSC-AT TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 335 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-AT TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel hMAT cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t3HMSCAT localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqHmscatCellTapContigs\ type bed 6\ wgEncodeUwDnaseHmvecdadPkRep2 HMVECdAd Pk 2 narrowPeak HMVEC-dAd DNaseI HS Peaks Rep 2 from ENCODE/UW 1 335 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dAd DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMVECdAd Pk 2\ subGroups view=Peaks cellType=t3HMVECDAD rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdadPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHuvecNucleusLongnonpolyaMinusRawSigRep4 HUVEC nuc pA- - 2 bigWig 1.000000 2061775.000000 HUVEC nucleus polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 335 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC nucleus polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HUVEC nuc pA- - 2\ subGroups view=MinusSignal cellType=t2HUVEC localization=NUCLEUS rnaExtract=PAM rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqHuvecNucleusLongnonpolyaMinusRawSigRep4\ type bigWig 1.000000 2061775.000000\ wgEncodeHaibTfbsK562Atf3V0416101PkRep1 K562 ATF3 V101 1 broadPeak K562 ATF3 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 335 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ATF3 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 ATF3 V101 1\ subGroups view=Peaks factor=ATF3 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Atf3V0416101PkRep1\ type broadPeak\ wgEncodeSydhTfbsK562Xrcc4StdPk K562 XRCC Std narrowPeak K562 XRCC4 Standard ChIP-seq Peaks from ENCODE/SYDH 3 335 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 XRCC4 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 XRCC Std\ subGroups view=Peaks factor=XRCC4 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Xrcc4StdPk\ type narrowPeak\ wgEncodeUwTfbsRptecCtcfStdHotspotsRep1 RPTC CTCF Ht 1 broadPeak RPTEC CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 335 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPTEC CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel RPTC CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3RPTEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsRptecCtcfStdHotspotsRep1\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_ctss_fwd Tc:ARPE-19Emt_04hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_forward 0 335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep2.CNhs14498.13659-147C5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13659-147C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_tpm_fwd Tc:ARPE-19Emt_04hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_forward 1 335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep2.CNhs14498.13659-147C5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13659-147C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k04me1Sig Dnd41 H3K4m1 bigWig 0.040000 13673.240234 Dnd41 H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 336 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Dnd41 H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Dnd41 H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k04me1Sig\ type bigWig 0.040000 13673.240234\ wgEncodeUwHistoneH7esH3k36me3StdDiffa9dHotspotsRep1 H7ES H3K36M3 Ht 1 broadPeak H7-hESC H3K36me3 diffProtA 9 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 336 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 diffProtA 9 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K36M3 Ht 1\ subGroups view=Hot factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep1\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa9dHotspotsRep1\ type broadPeak\ wgEncodeAwgTfbsSydhHelas3Pol2s2IggrabUniPk HeLa-S3 POLR2A s narrowPeak HeLa-S3 TFBS Uniform Peaks of Pol2(phosphoS2) from ENCODE/Stanford/Analysis 1 336 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of Pol2(phosphoS2) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 POLR2A s\ subGroups tier=a20 cellType=a20HELAS3 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Pol2s2IggrabUniPk\ encTfChipPkENCFF675ZHC HeLa-S3 UBTF narrowPeak Transcription Factor ChIP-seq Peaks of UBTF in HeLa-S3 from ENCODE 3 (ENCFF675ZHC) 1 336 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel Transcription Factor ChIP-seq Peaks of UBTF in HeLa-S3 from ENCODE 3 (ENCFF675ZHC)\ parent encTfChipPk off\ shortLabel HeLa-S3 UBTF\ subGroups cellType=HeLa-S3 factor=UBTF\ track encTfChipPkENCFF675ZHC\ wgEncodeRikenCageHfdpcCellPapAlnRep2 HFDP cell pA+ A 2 bam HFDPC whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 336 0 0 0 127 127 127 0 0 0 expression 1 longLabel HFDPC whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HFDP cell pA+ A 2\ subGroups view=Alignments cellType=t3HFDPC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHfdpcCellPapAlnRep2\ type bam\ wgEncodeCshlShortRnaSeqHmscat010260412CellTapMinusRep1 hMAT cell TAP - 1 bigWig 1.000000 23879364.000000 hMSC-AT TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 336 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-AT TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel hMAT cell TAP - 1\ subGroups view=MinusSignal cellType=t3HMSCAT localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHmscat010260412CellTapMinusRep1\ type bigWig 1.000000 23879364.000000\ wgEncodeUwDnaseHmvecdadRawRep2 HMVECdAd Sg 2 bigWig 1.000000 22548.000000 HMVEC-dAd DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 336 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dAd DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMVECdAd Sg 2\ subGroups view=zRSig cellType=t3HMVECDAD rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdadRawRep2\ type bigWig 1.000000 22548.000000\ wgEncodeCshlLongRnaSeqHuvecNucleusLongnonpolyaPlusRawSigRep3 HUVEC nuc pA- + 1 bigWig 1.000000 6352828.000000 HUVEC nucleus polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 336 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC nucleus polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HUVEC nuc pA- + 1\ subGroups view=PlusSignal cellType=t2HUVEC localization=NUCLEUS rnaExtract=PAM rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecNucleusLongnonpolyaPlusRawSigRep3\ type bigWig 1.000000 6352828.000000\ wgEncodeHaibTfbsK562Atf3V0416101RawRep1 K562 ATF3 V101 1 bigWig 0.154698 132.149994 K562 ATF3 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 336 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ATF3 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 ATF3 V101 1\ subGroups view=RawSignal factor=ATF3 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Atf3V0416101RawRep1\ type bigWig 0.154698 132.149994\ wgEncodeSydhTfbsK562Xrcc4StdSig K562 XRCC Std bigWig 0.000000 28467.900391 K562 XRCC4 Standard ChIP-seq Signal from ENCODE/SYDH 2 336 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 XRCC4 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 XRCC Std\ subGroups view=Signal factor=XRCC4 cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562Xrcc4StdSig\ type bigWig 0.000000 28467.900391\ wgEncodeUwTfbsRptecCtcfStdPkRep1 RPTC CTCF Pk 1 narrowPeak RPTEC CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 336 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPTEC CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel RPTC CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3RPTEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsRptecCtcfStdPkRep1\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_ctss_rev Tc:ARPE-19Emt_04hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_reverse 0 336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep2.CNhs14498.13659-147C5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13659-147C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_tpm_rev Tc:ARPE-19Emt_04hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_reverse 1 336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep2.CNhs14498.13659-147C5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13659-147C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k04me2Pk Dnd41 H3K4m2 broadPeak Dnd41 H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 337 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Dnd41 H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Dnd41 H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k04me2Pk\ type broadPeak\ wgEncodeUwHistoneH7esH3k36me3StdDiffa9dPkRep1 H7ES H3K36M3 Pk 1 narrowPeak H7-hESC H3K36me3 diffProtA 9 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 337 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 diffProtA 9 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K36M3 Pk 1\ subGroups view=Peaks factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep1\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa9dPkRep1\ type narrowPeak\ wgEncodeAwgTfbsUtaHelas3Pol2UniPk HeLa-S3 POLR2A t narrowPeak HeLa-S3 TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis 1 337 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 POLR2A t\ subGroups tier=a20 cellType=a20HELAS3 factor=POLR2A lab=UT-A\ track wgEncodeAwgTfbsUtaHelas3Pol2UniPk\ encTfChipPkENCFF708OJJ HeLa-S3 ZHX1 narrowPeak Transcription Factor ChIP-seq Peaks of ZHX1 in HeLa-S3 from ENCODE 3 (ENCFF708OJJ) 1 337 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel Transcription Factor ChIP-seq Peaks of ZHX1 in HeLa-S3 from ENCODE 3 (ENCFF708OJJ)\ parent encTfChipPk off\ shortLabel HeLa-S3 ZHX1\ subGroups cellType=HeLa-S3 factor=ZHX1\ track encTfChipPkENCFF708OJJ\ wgEncodeCshlShortRnaSeqHmscat906160112CellTapMinusRep2 hMAT cell TAP - 2 bigWig 1.000000 17641766.000000 hMSC-AT TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 337 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-AT TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel hMAT cell TAP - 2\ subGroups view=MinusSignal cellType=t3HMSCAT localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHmscat906160112CellTapMinusRep2\ type bigWig 1.000000 17641766.000000\ wgEncodeRikenCageHmepcCellPapTssHmm HMEp cell pA+ bed 6 HMEpC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 337 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMEpC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HMEp cell pA+\ subGroups view=TssHmm cellType=t3HMEPC localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHmepcCellPapTssHmm\ type bed 6\ wgEncodeUwDnaseHmvecdbladHotspotsRep1 HMVECdBlAd Ht 1 broadPeak HMVEC-dBl-Ad DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 337 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dBl-Ad DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMVECdBlAd Ht 1\ subGroups view=Hot cellType=t3HMVECDBLAD rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdbladHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHuvecNucleusLongnonpolyaPlusRawSigRep4 HUVEC nuc pA- + 2 bigWig 1.000000 2440259.000000 HUVEC nucleus polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 337 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC nucleus polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HUVEC nuc pA- + 2\ subGroups view=PlusSignal cellType=t2HUVEC localization=NUCLEUS rnaExtract=PAM rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqHuvecNucleusLongnonpolyaPlusRawSigRep4\ type bigWig 1.000000 2440259.000000\ wgEncodeHaibTfbsK562Atf3V0416101PkRep2 K562 ATF3 V101 2 broadPeak K562 ATF3 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 337 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ATF3 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 ATF3 V101 2\ subGroups view=Peaks factor=ATF3 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Atf3V0416101PkRep2\ type broadPeak\ wgEncodeSydhTfbsK562Yy1UcdPk K562 YY1 UCD narrowPeak K562 YY1 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 337 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 YY1 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 YY1 UCD\ subGroups view=Peaks factor=YY1 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Yy1UcdPk\ type narrowPeak\ wgEncodeUwTfbsRptecCtcfStdRawRep1 RPTC CTCF Sg 1 bigWig 1.000000 9148.000000 RPTEC CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 337 0 0 0 127 127 127 0 0 0 regulation 0 longLabel RPTEC CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel RPTC CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3RPTEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsRptecCtcfStdRawRep1\ type bigWig 1.000000 9148.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_ctss_fwd Tc:ARPE-19Emt_04hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_forward 0 337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep3.CNhs14499.13660-147C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13660-147C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_tpm_fwd Tc:ARPE-19Emt_04hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_forward 1 337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep3.CNhs14499.13660-147C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13660-147C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k04me2Sig Dnd41 H3K4m2 bigWig 0.040000 4441.000000 Dnd41 H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 338 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Dnd41 H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Dnd41 H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k04me2Sig\ type bigWig 0.040000 4441.000000\ wgEncodeUwHistoneH7esH3k36me3StdDiffa9dRawRep1 H7ES H3K36M3 Sg 1 bigWig 1.000000 8379.000000 H7-hESC H3K36me3 diffProtA 9 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 338 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K36me3 diffProtA 9 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K36M3 Sg 1\ subGroups view=zRSig factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep1\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa9dRawRep1\ type bigWig 1.000000 8379.000000\ wgEncodeAwgTfbsSydhHelas3Pol2UniPk HeLa-S3 POLR2A y narrowPeak HeLa-S3 TFBS Uniform Peaks of Pol2 from ENCODE/Yale/Analysis 1 338 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of Pol2 from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 POLR2A y\ subGroups tier=a20 cellType=a20HELAS3 factor=POLR2A lab=Yale\ track wgEncodeAwgTfbsSydhHelas3Pol2UniPk\ encTfChipPkENCFF639TOU HepG2 AGO1 narrowPeak Transcription Factor ChIP-seq Peaks of AGO1 in HepG2 from ENCODE 3 (ENCFF639TOU) 1 338 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of AGO1 in HepG2 from ENCODE 3 (ENCFF639TOU)\ parent encTfChipPk off\ shortLabel HepG2 AGO1\ subGroups cellType=HepG2 factor=AGO1\ track encTfChipPkENCFF639TOU\ wgEncodeCshlShortRnaSeqHmscat010260412CellTapPlusRep1 hMAT cell TAP + 1 bigWig 1.000000 18116456.000000 hMSC-AT TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 338 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-AT TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel hMAT cell TAP + 1\ subGroups view=PlusSignal cellType=t3HMSCAT localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHmscat010260412CellTapPlusRep1\ type bigWig 1.000000 18116456.000000\ wgEncodeRikenCageHmepcCellPapPlusRawRep1 HMEp cell pA+ + 1 bigWig 1.000000 399895.000000 HMEpC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 338 0 0 0 127 127 127 0 0 0 expression 0 longLabel HMEpC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HMEp cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3HMEPC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHmepcCellPapPlusRawRep1\ type bigWig 1.000000 399895.000000\ wgEncodeUwDnaseHmvecdbladPkRep1 HMVECdBlAd Pk 1 narrowPeak HMVEC-dBl-Ad DNaseI HS Peaks Rep 1 from ENCODE/UW 1 338 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dBl-Ad DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMVECdBlAd Pk 1\ subGroups view=Peaks cellType=t3HMVECDBLAD rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdbladPkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHuvecNucleusPapAlnRep3 HUVEC nuc pA+ A 1 bam HUVEC nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 338 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HUVEC nuc pA+ A 1\ subGroups view=Alignments cellType=t2HUVEC localization=NUCLEUS rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecNucleusPapAlnRep3\ type bam\ wgEncodeHaibTfbsK562Atf3V0416101RawRep2 K562 ATF3 V101 2 bigWig 0.178692 172.884003 K562 ATF3 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 338 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ATF3 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 ATF3 V101 2\ subGroups view=RawSignal factor=ATF3 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Atf3V0416101RawRep2\ type bigWig 0.178692 172.884003\ wgEncodeSydhTfbsK562Yy1UcdSig K562 YY1 UCD bigWig 0.000000 14540.000000 K562 YY1 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 338 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 YY1 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 YY1 UCD\ subGroups view=Signal factor=YY1 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Yy1UcdSig\ type bigWig 0.000000 14540.000000\ wgEncodeUwTfbsRptecCtcfStdHotspotsRep2 RPTC CTCF Ht 2 broadPeak RPTEC CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 338 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPTEC CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel RPTC CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3RPTEC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsRptecCtcfStdHotspotsRep2\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_ctss_rev Tc:ARPE-19Emt_04hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_reverse 0 338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep3.CNhs14499.13660-147C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13660-147C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_tpm_rev Tc:ARPE-19Emt_04hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_reverse 1 338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep3.CNhs14499.13660-147C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13660-147C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k04me3Pk Dnd41 H3K4m3 broadPeak Dnd41 H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 339 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Dnd41 H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Dnd41 H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k04me3Pk\ type broadPeak\ wgEncodeUwHistoneH7esH3k36me3StdDiffa9dHotspotsRep2 H7ES H3K36M3 Ht 2 broadPeak H7-hESC H3K36me3 diffProtA 9 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 339 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 diffProtA 9 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K36M3 Ht 2\ subGroups view=Hot factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep2\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa9dHotspotsRep2\ type broadPeak\ wgEncodeAwgTfbsSydhHelas3Prdm19115IggrabUniPk HeLa-S3 PRDM1 narrowPeak HeLa-S3 TFBS Uniform Peaks of PRDM1_(9115) from ENCODE/Stanford/Analysis 1 339 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of PRDM1_(9115) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 PRDM1\ subGroups tier=a20 cellType=a20HELAS3 factor=PRDM1 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Prdm19115IggrabUniPk\ encTfChipPkENCFF622VSV HepG2 AGO2 narrowPeak Transcription Factor ChIP-seq Peaks of AGO2 in HepG2 from ENCODE 3 (ENCFF622VSV) 1 339 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of AGO2 in HepG2 from ENCODE 3 (ENCFF622VSV)\ parent encTfChipPk off\ shortLabel HepG2 AGO2\ subGroups cellType=HepG2 factor=AGO2\ track encTfChipPkENCFF622VSV\ wgEncodeCshlShortRnaSeqHmscat906160112CellTapPlusRep2 hMAT cell TAP + 2 bigWig 1.000000 21364454.000000 hMSC-AT TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 339 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-AT TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel hMAT cell TAP + 2\ subGroups view=PlusSignal cellType=t3HMSCAT localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHmscat906160112CellTapPlusRep2\ type bigWig 1.000000 21364454.000000\ wgEncodeRikenCageHmepcCellPapMinusRawRep1 HMEp cell pA+ - 1 bigWig 1.000000 316549.000000 HMEpC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 339 0 0 0 127 127 127 0 0 0 expression 0 longLabel HMEpC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HMEp cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3HMEPC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHmepcCellPapMinusRawRep1\ type bigWig 1.000000 316549.000000\ wgEncodeUwDnaseHmvecdbladRawRep1 HMVECdBlAd Sg 1 bigWig 1.000000 28117.000000 HMVEC-dBl-Ad DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 339 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dBl-Ad DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMVECdBlAd Sg 1\ subGroups view=zRSig cellType=t3HMVECDBLAD rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdbladRawRep1\ type bigWig 1.000000 28117.000000\ wgEncodeCshlLongRnaSeqHuvecNucleusPapAlnRep4 HUVEC nuc pA+ A 2 bam HUVEC nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 339 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HUVEC nuc pA+ A 2\ subGroups view=Alignments cellType=t2HUVEC localization=NUCLEUS rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqHuvecNucleusPapAlnRep4\ type bam\ wgEncodeHaibTfbsK562Bclaf101388Pcr1xPkRep1 K562 BCLAF1 1 broadPeak K562 BCLAF1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 339 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 BCLAF1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 BCLAF1 1\ subGroups view=Peaks factor=BCLAF101388 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Bclaf101388Pcr1xPkRep1\ type broadPeak\ wgEncodeSydhTfbsK562Zc3h11anb10074650IggrabPk K562 ZC3H11A IgR narrowPeak K562 ZC3H11A (NB100-74650) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 339 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ZC3H11A (NB100-74650) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 ZC3H11A IgR\ subGroups view=Peaks factor=ZC3H11ANB10074650 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Zc3h11anb10074650IggrabPk\ type narrowPeak\ wgEncodeUwTfbsRptecCtcfStdPkRep2 RPTC CTCF Pk 2 narrowPeak RPTEC CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 339 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPTEC CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel RPTC CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3RPTEC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsRptecCtcfStdPkRep2\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_ctss_fwd Tc:ARPE-19Emt_05hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_forward 0 339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep1.CNhs14500.13661-147C7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13661-147C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_tpm_fwd Tc:ARPE-19Emt_05hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_forward 1 339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep1.CNhs14500.13661-147C7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13661-147C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k04me3Sig Dnd41 H3K4m3 bigWig 0.040000 26392.880859 Dnd41 H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 340 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Dnd41 H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Dnd41 H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k04me3Sig\ type bigWig 0.040000 26392.880859\ wgEncodeUwHistoneH7esH3k36me3StdDiffa9dPkRep2 H7ES H3K36M3 Pk 2 narrowPeak H7-hESC H3K36me3 diffProtA 9 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 340 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 diffProtA 9 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K36M3 Pk 2\ subGroups view=Peaks factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep2\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa9dPkRep2\ type narrowPeak\ wgEncodeAwgTfbsSydhHelas3Rad21IggrabUniPk HeLa-S3 RAD21 narrowPeak HeLa-S3 TFBS Uniform Peaks of Rad21 from ENCODE/Stanford/Analysis 1 340 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of Rad21 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 RAD21\ subGroups tier=a20 cellType=a20HELAS3 factor=RAD21 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Rad21IggrabUniPk\ encTfChipPkENCFF514OYL HepG2 ARID3A narrowPeak Transcription Factor ChIP-seq Peaks of ARID3A in HepG2 from ENCODE 3 (ENCFF514OYL) 1 340 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ARID3A in HepG2 from ENCODE 3 (ENCFF514OYL)\ parent encTfChipPk off\ shortLabel HepG2 ARID3A\ subGroups cellType=HepG2 factor=ARID3A\ track encTfChipPkENCFF514OYL\ wgEncodeCshlShortRnaSeqHmscbmCellTapContigs hMBM cell TAP C bed 6 hMSC-BM TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 340 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-BM TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel hMBM cell TAP C\ subGroups view=Contigs cellType=t3HMSCBM localization=CELL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqHmscbmCellTapContigs\ type bed 6\ wgEncodeRikenCageHmepcCellPapAlnRep1 HMEp cell pA+ A 1 bam HMEpC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 340 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMEpC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HMEp cell pA+ A 1\ subGroups view=Alignments cellType=t3HMEPC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHmepcCellPapAlnRep1\ type bam\ wgEncodeUwDnaseHmvecdbladHotspotsRep2 HMVECdBlAd Ht 2 broadPeak HMVEC-dBl-Ad DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 340 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dBl-Ad DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMVECdBlAd Ht 2\ subGroups view=Hot cellType=t3HMVECDBLAD rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdbladHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHuvecNucleusPapContigs HUVEC nuc pA+ C bed 6 + HUVEC nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 340 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HUVEC nuc pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2HUVEC localization=NUCLEUS rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqHuvecNucleusPapContigs\ type bed 6 +\ wgEncodeHaibTfbsK562Bclaf101388Pcr1xRawRep1 K562 BCLAF1 1 bigWig 0.271154 76.736504 K562 BCLAF1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 340 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 BCLAF1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 BCLAF1 1\ subGroups view=RawSignal factor=BCLAF101388 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Bclaf101388Pcr1xRawRep1\ type bigWig 0.271154 76.736504\ wgEncodeSydhTfbsK562Zc3h11anb10074650IggrabSig K562 ZC3H11A IgR bigWig 1.000000 18600.000000 K562 ZC3H11A (NB100-74650) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 340 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ZC3H11A (NB100-74650) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 ZC3H11A IgR\ subGroups view=Signal factor=ZC3H11ANB10074650 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Zc3h11anb10074650IggrabSig\ type bigWig 1.000000 18600.000000\ wgEncodeUwTfbsRptecCtcfStdRawRep2 RPTC CTCF Sg 2 bigWig 1.000000 7511.000000 RPTEC CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 340 0 0 0 127 127 127 0 0 0 regulation 0 longLabel RPTEC CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel RPTC CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3RPTEC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsRptecCtcfStdRawRep2\ type bigWig 1.000000 7511.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_ctss_rev Tc:ARPE-19Emt_05hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_reverse 0 340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep1.CNhs14500.13661-147C7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13661-147C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_tpm_rev Tc:ARPE-19Emt_05hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_reverse 1 340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep1.CNhs14500.13661-147C7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13661-147C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k09acPk Dnd41 H3K9ac broadPeak Dnd41 H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 341 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Dnd41 H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Dnd41 H3K9ac\ subGroups view=Peaks factor=H3K09AC cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k09acPk\ type broadPeak\ wgEncodeUwHistoneH7esH3k36me3StdDiffa9dRawRep2 H7ES H3K36M3 Sg 2 bigWig 1.000000 2855.000000 H7-hESC H3K36me3 diffProtA 9 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 341 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K36me3 diffProtA 9 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K36M3 Sg 2\ subGroups view=zRSig factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA09D rep=rep2\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa9dRawRep2\ type bigWig 1.000000 2855.000000\ wgEncodeAwgTfbsSydhHelas3Corestsc30189IggrabUniPk HeLa-S3 RCOR1 narrowPeak HeLa-S3 TFBS Uniform Peaks of COREST_(sc-30189) from ENCODE/Stanford/Analysis 1 341 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of COREST_(sc-30189) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 RCOR1\ subGroups tier=a20 cellType=a20HELAS3 factor=RCOR1 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Corestsc30189IggrabUniPk\ encTfChipPkENCFF808WQI HepG2 ARNT narrowPeak Transcription Factor ChIP-seq Peaks of ARNT in HepG2 from ENCODE 3 (ENCFF808WQI) 1 341 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ARNT in HepG2 from ENCODE 3 (ENCFF808WQI)\ parent encTfChipPk off\ shortLabel HepG2 ARNT\ subGroups cellType=HepG2 factor=ARNT\ track encTfChipPkENCFF808WQI\ wgEncodeRikenCageHmscatCellPapTssHmm hMAT cell pA+ bed 6 hMSC-AT whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 341 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-AT whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel hMAT cell pA+\ subGroups view=TssHmm cellType=t3HMSCAT localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHmscatCellPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqHmscbmCellTapMinusRawRep1 hMBM cell TAP - 1 bigWig 1.000000 55409272.000000 hMSC-BM TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 341 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-BM TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel hMBM cell TAP - 1\ subGroups view=MinusSignal cellType=t3HMSCBM localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHmscbmCellTapMinusRawRep1\ type bigWig 1.000000 55409272.000000\ wgEncodeUwDnaseHmvecdbladPkRep2 HMVECdBlAd Pk 2 narrowPeak HMVEC-dBl-Ad DNaseI HS Peaks Rep 2 from ENCODE/UW 1 341 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dBl-Ad DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMVECdBlAd Pk 2\ subGroups view=Peaks cellType=t3HMVECDBLAD rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdbladPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHuvecNucleusPapJunctions HUVEC nuc pA+ J bed 6 + HUVEC nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 341 224 75 0 239 165 127 0 0 0 expression 1 color 224,75,0\ longLabel HUVEC nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HUVEC nuc pA+ J\ subGroups view=Junctions cellType=t2HUVEC localization=NUCLEUS rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHuvecNucleusPapJunctions\ type bed 6 +\ wgEncodeHaibTfbsK562Bclaf101388Pcr1xPkRep2 K562 BCLAF1 2 broadPeak K562 BCLAF1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 341 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 BCLAF1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 BCLAF1 2\ subGroups view=Peaks factor=BCLAF101388 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Bclaf101388Pcr1xPkRep2\ type broadPeak\ wgEncodeSydhTfbsK562Znf143IggrabPk K562 Z143 IgR narrowPeak K562 Znf143 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 341 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Znf143 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 Z143 IgR\ subGroups view=Peaks factor=ZNF143166181AP cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Znf143IggrabPk\ type narrowPeak\ wgEncodeUwTfbsRptecInputStdRawRep1 RPTC In Sg 1 bigWig 1.000000 17750.000000 RPTEC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 341 0 0 0 127 127 127 0 0 0 regulation 0 longLabel RPTEC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel RPTC In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3RPTEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsRptecInputStdRawRep1\ type bigWig 1.000000 17750.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_ctss_fwd Tc:ARPE-19Emt_05hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_forward 0 341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep2.CNhs14501.13662-147C8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13662-147C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_tpm_fwd Tc:ARPE-19Emt_05hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_forward 1 341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep2.CNhs14501.13662-147C8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13662-147C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k09acSig Dnd41 H3K9ac bigWig 0.040000 14692.759766 Dnd41 H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 342 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Dnd41 H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Dnd41 H3K9ac\ subGroups view=Signal factor=H3K09AC cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k09acSig\ type bigWig 0.040000 14692.759766\ wgEncodeUwHistoneH7esH3k36me3StdDiffa14dHotspotsRep1 H7ES H3K36M3 Ht 1 broadPeak H7-hESC H3K36me3 diffProtA 14 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 342 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 diffProtA 14 d Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K36M3 Ht 1\ subGroups view=Hot factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep1\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa14dHotspotsRep1\ type broadPeak\ wgEncodeAwgTfbsHaibHelas3NrsfPcr1xUniPk HeLa-S3 REST narrowPeak HeLa-S3 TFBS Uniform Peaks of NRSF from ENCODE/HudsonAlpha/Analysis 1 342 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of NRSF from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 REST\ subGroups tier=a20 cellType=a20HELAS3 factor=REST lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHelas3NrsfPcr1xUniPk\ encTfChipPkENCFF747VMG HepG2 ASH2L narrowPeak Transcription Factor ChIP-seq Peaks of ASH2L in HepG2 from ENCODE 3 (ENCFF747VMG) 1 342 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ASH2L in HepG2 from ENCODE 3 (ENCFF747VMG)\ parent encTfChipPk off\ shortLabel HepG2 ASH2L\ subGroups cellType=HepG2 factor=ASH2L\ track encTfChipPkENCFF747VMG\ wgEncodeRikenCageHmscatCellPapPlusRawRep1 hMAT cell pA+ + 1 bigWig 1.000000 117818.000000 hMSC-AT whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 342 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-AT whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel hMAT cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3HMSCAT localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHmscatCellPapPlusRawRep1\ type bigWig 1.000000 117818.000000\ wgEncodeCshlShortRnaSeqHmscbmCellTapMinusRawRep2 hMBM cell TAP - 2 bigWig 1.000000 47151504.000000 hMSC-BM TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 342 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-BM TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel hMBM cell TAP - 2\ subGroups view=MinusSignal cellType=t3HMSCBM localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHmscbmCellTapMinusRawRep2\ type bigWig 1.000000 47151504.000000\ wgEncodeUwDnaseHmvecdbladRawRep2 HMVECdBlAd Sg 2 bigWig 1.000000 25825.000000 HMVEC-dBl-Ad DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 342 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dBl-Ad DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMVECdBlAd Sg 2\ subGroups view=zRSig cellType=t3HMVECDBLAD rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdbladRawRep2\ type bigWig 1.000000 25825.000000\ wgEncodeCshlLongRnaSeqHuvecNucleusPapMinusRawSigRep3 HUVEC nuc pA+ - 1 bigWig 1.000000 181418.000000 HUVEC nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 342 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HUVEC nuc pA+ - 1\ subGroups view=MinusSignal cellType=t2HUVEC localization=NUCLEUS rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecNucleusPapMinusRawSigRep3\ type bigWig 1.000000 181418.000000\ wgEncodeHaibTfbsK562Bclaf101388Pcr1xRawRep2 K562 BCLAF1 2 bigWig 0.284958 110.990997 K562 BCLAF1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 342 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 BCLAF1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 BCLAF1 2\ subGroups view=RawSignal factor=BCLAF101388 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Bclaf101388Pcr1xRawRep2\ type bigWig 0.284958 110.990997\ wgEncodeSydhTfbsK562Znf143IggrabSig K562 Z143 IgR bigWig 1.000000 19257.000000 K562 Znf143 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 342 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Znf143 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 Z143 IgR\ subGroups view=Signal factor=ZNF143166181AP cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Znf143IggrabSig\ type bigWig 1.000000 19257.000000\ wgEncodeUwTfbsSaecCtcfStdHotspotsRep1 SAEC CTCF Ht 1 broadPeak SAEC CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 342 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel SAEC CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3SAEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsSaecCtcfStdHotspotsRep1\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_ctss_rev Tc:ARPE-19Emt_05hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_reverse 0 342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep2.CNhs14501.13662-147C8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13662-147C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_tpm_rev Tc:ARPE-19Emt_05hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_reverse 1 342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep2.CNhs14501.13662-147C8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13662-147C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k09me3Pk Dnd41 H3K9m3 broadPeak Dnd41 H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 343 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Dnd41 H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Dnd41 H3K9m3\ subGroups view=Peaks factor=H3K09ME3 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k09me3Pk\ type broadPeak\ wgEncodeUwHistoneH7esH3k36me3StdDiffa14dPkRep1 H7ES H3K36M3 Pk 1 narrowPeak H7-hESC H3K36me3 diffProtA 14 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 343 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 diffProtA 14 d Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K36M3 Pk 1\ subGroups view=Peaks factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep1\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa14dPkRep1\ type narrowPeak\ wgEncodeAwgTfbsSydhHelas3Rfx5200401194IggrabUniPk HeLa-S3 RFX5 narrowPeak HeLa-S3 TFBS Uniform Peaks of RFX5_(200-401-194) from ENCODE/Stanford/Analysis 1 343 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of RFX5_(200-401-194) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 RFX5\ subGroups tier=a20 cellType=a20HELAS3 factor=RFX5 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Rfx5200401194IggrabUniPk\ encTfChipPkENCFF502ZTC HepG2 ATF2 narrowPeak Transcription Factor ChIP-seq Peaks of ATF2 in HepG2 from ENCODE 3 (ENCFF502ZTC) 1 343 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ATF2 in HepG2 from ENCODE 3 (ENCFF502ZTC)\ parent encTfChipPk off\ shortLabel HepG2 ATF2\ subGroups cellType=HepG2 factor=ATF2\ track encTfChipPkENCFF502ZTC\ wgEncodeRikenCageHmscatCellPapPlusRawRep2 hMAT cell pA+ + 2 bigWig 1.000000 282008.000000 hMSC-AT whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 343 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-AT whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel hMAT cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3HMSCAT localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHmscatCellPapPlusRawRep2\ type bigWig 1.000000 282008.000000\ wgEncodeCshlShortRnaSeqHmscbmCellTapPlusRawRep1 hMBM cell TAP + 1 bigWig 1.000000 41087880.000000 hMSC-BM TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 343 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-BM TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel hMBM cell TAP + 1\ subGroups view=PlusSignal cellType=t3HMSCBM localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHmscbmCellTapPlusRawRep1\ type bigWig 1.000000 41087880.000000\ wgEncodeUwDnaseHmvecdblneoHotspotsRep1 HMVECdBlNeo Ht 1 broadPeak HMVEC-dBl-Neo DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 343 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dBl-Neo DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMVECdBlNeo Ht 1\ subGroups view=Hot cellType=t3HMVECDBLNEO rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdblneoHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHuvecNucleusPapMinusRawSigRep4 HUVEC nuc pA+ - 2 bigWig 1.000000 81348.000000 HUVEC nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 343 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HUVEC nuc pA+ - 2\ subGroups view=MinusSignal cellType=t2HUVEC localization=NUCLEUS rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqHuvecNucleusPapMinusRawSigRep4\ type bigWig 1.000000 81348.000000\ wgEncodeHaibTfbsK562Cbx3sc101004V0422111PkRep1 K562 CBX3 V11 1 broadPeak K562 CBX3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 343 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CBX3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 CBX3 V11 1\ subGroups view=Peaks factor=CBX3SC101004 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Cbx3sc101004V0422111PkRep1\ type broadPeak\ wgEncodeSydhTfbsK562Znf263UcdPk K562 Z263 UCD narrowPeak K562 ZNF263 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 343 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ZNF263 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 Z263 UCD\ subGroups view=Peaks factor=ZNF263 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Znf263UcdPk\ type narrowPeak\ wgEncodeUwTfbsSaecCtcfStdPkRep1 SAEC CTCF Pk 1 narrowPeak SAEC CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 343 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel SAEC CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3SAEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsSaecCtcfStdPkRep1\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_ctss_fwd Tc:ARPE-19Emt_05hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_forward 0 343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep3.CNhs14518.13663-147C9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13663-147C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_tpm_fwd Tc:ARPE-19Emt_05hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_forward 1 343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep3.CNhs14518.13663-147C9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13663-147C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k09me3Sig Dnd41 H3K9m3 bigWig 0.040000 76419.203125 Dnd41 H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 344 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Dnd41 H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Dnd41 H3K9m3\ subGroups view=Signal factor=H3K09ME3 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k09me3Sig\ type bigWig 0.040000 76419.203125\ wgEncodeUwHistoneH7esH3k36me3StdDiffa14dRawRep1 H7ES H3K36M3 Sg 1 bigWig 1.000000 3756.000000 H7-hESC H3K36me3 diffProtA 14 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 344 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K36me3 diffProtA 14 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K36M3 Sg 1\ subGroups view=zRSig factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep1\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa14dRawRep1\ type bigWig 1.000000 3756.000000\ wgEncodeAwgTfbsSydhHelas3Rpc155UniPk HeLa-S3 RPC155 narrowPeak HeLa-S3 TFBS Uniform Peaks of RPC155 from ENCODE/Harvard/Analysis 1 344 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of RPC155 from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 RPC155\ subGroups tier=a20 cellType=a20HELAS3 factor=RPC155 lab=Harvard\ track wgEncodeAwgTfbsSydhHelas3Rpc155UniPk\ encTfChipPkENCFF857YVK HepG2 ATF3 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in HepG2 from ENCODE 3 (ENCFF857YVK) 1 344 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ATF3 in HepG2 from ENCODE 3 (ENCFF857YVK)\ parent encTfChipPk off\ shortLabel HepG2 ATF3\ subGroups cellType=HepG2 factor=ATF3\ track encTfChipPkENCFF857YVK\ wgEncodeRikenCageHmscatCellPapMinusRawRep1 hMAT cell pA+ - 1 bigWig 1.000000 127223.000000 hMSC-AT whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 344 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-AT whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel hMAT cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3HMSCAT localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHmscatCellPapMinusRawRep1\ type bigWig 1.000000 127223.000000\ wgEncodeCshlShortRnaSeqHmscbmCellTapPlusRawRep2 hMBM cell TAP + 2 bigWig 1.000000 47959376.000000 hMSC-BM TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 344 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-BM TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel hMBM cell TAP + 2\ subGroups view=PlusSignal cellType=t3HMSCBM localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHmscbmCellTapPlusRawRep2\ type bigWig 1.000000 47959376.000000\ wgEncodeUwDnaseHmvecdblneoPkRep1 HMVECdBlNeo Pk 1 narrowPeak HMVEC-dBl-Neo DNaseI HS Peaks Rep 1 from ENCODE/UW 1 344 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dBl-Neo DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMVECdBlNeo Pk 1\ subGroups view=Peaks cellType=t3HMVECDBLNEO rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdblneoPkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHuvecNucleusPapPlusRawSigRep3 HUVEC nuc pA+ + 1 bigWig 1.000000 259858.000000 HUVEC nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 344 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HUVEC nuc pA+ + 1\ subGroups view=PlusSignal cellType=t2HUVEC localization=NUCLEUS rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqHuvecNucleusPapPlusRawSigRep3\ type bigWig 1.000000 259858.000000\ wgEncodeHaibTfbsK562Cbx3sc101004V0422111RawRep1 K562 CBX3 V11 1 bigWig 0.093755 107.912003 K562 CBX3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 344 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CBX3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 CBX3 V11 1\ subGroups view=RawSignal factor=CBX3SC101004 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Cbx3sc101004V0422111RawRep1\ type bigWig 0.093755 107.912003\ wgEncodeSydhTfbsK562Znf263UcdSig K562 Z263 UCD bigWig 0.000000 4513.000000 K562 ZNF263 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 344 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ZNF263 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 Z263 UCD\ subGroups view=Signal factor=ZNF263 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Znf263UcdSig\ type bigWig 0.000000 4513.000000\ wgEncodeUwTfbsSaecCtcfStdRawRep1 SAEC CTCF Sg 1 bigWig 1.000000 1813.000000 SAEC CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 344 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SAEC CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel SAEC CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3SAEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsSaecCtcfStdRawRep1\ type bigWig 1.000000 1813.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_ctss_rev Tc:ARPE-19Emt_05hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_reverse 0 344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep3.CNhs14518.13663-147C9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13663-147C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_tpm_rev Tc:ARPE-19Emt_05hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_reverse 1 344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep3.CNhs14518.13663-147C9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13663-147C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k27acPk Dnd41 H3K27ac broadPeak Dnd41 H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 345 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Dnd41 H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Dnd41 H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k27acPk\ type broadPeak\ wgEncodeUwHistoneH7esH3k36me3StdDiffa14dHotspotsRep2 H7ES H3K36M3 Ht 2 broadPeak H7-hESC H3K36me3 diffProtA 14 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 345 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 diffProtA 14 d Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K36M3 Ht 2\ subGroups view=Hot factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep2\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa14dHotspotsRep2\ type broadPeak\ wgEncodeAwgTfbsSydhHelas3Brg1IggmusUniPk HeLa-S3 SMARCA4 narrowPeak HeLa-S3 TFBS Uniform Peaks of Brg1 from ENCODE/Yale/Analysis 1 345 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of Brg1 from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 SMARCA4\ subGroups tier=a20 cellType=a20HELAS3 factor=SMARCA4 lab=Yale\ track wgEncodeAwgTfbsSydhHelas3Brg1IggmusUniPk\ encTfChipPkENCFF658YLW HepG2 ATF7 narrowPeak Transcription Factor ChIP-seq Peaks of ATF7 in HepG2 from ENCODE 3 (ENCFF658YLW) 1 345 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ATF7 in HepG2 from ENCODE 3 (ENCFF658YLW)\ parent encTfChipPk off\ shortLabel HepG2 ATF7\ subGroups cellType=HepG2 factor=ATF7\ track encTfChipPkENCFF658YLW\ wgEncodeRikenCageHmscatCellPapMinusRawRep2 hMAT cell pA+ - 2 bigWig 1.000000 235398.000000 hMSC-AT whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 345 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-AT whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel hMAT cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3HMSCAT localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHmscatCellPapMinusRawRep2\ type bigWig 1.000000 235398.000000\ wgEncodeCshlShortRnaSeqHmscucCellTapContigs hMUC cell TAP C bed 6 hMSC-UC TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 345 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-UC TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel hMUC cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t3HMSCUC localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqHmscucCellTapContigs\ type bed 6\ wgEncodeUwDnaseHmvecdblneoRawRep1 HMVECdBlNeo Sg 1 bigWig 1.000000 39913.000000 HMVEC-dBl-Neo DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 345 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dBl-Neo DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMVECdBlNeo Sg 1\ subGroups view=zRSig cellType=t3HMVECDBLNEO rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdblneoRawRep1\ type bigWig 1.000000 39913.000000\ wgEncodeCshlLongRnaSeqHuvecNucleusPapPlusRawSigRep4 HUVEC nuc pA+ + 2 bigWig 1.000000 261683.000000 HUVEC nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 345 224 75 0 239 165 127 0 0 0 expression 0 color 224,75,0\ longLabel HUVEC nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HUVEC nuc pA+ + 2\ subGroups view=PlusSignal cellType=t2HUVEC localization=NUCLEUS rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqHuvecNucleusPapPlusRawSigRep4\ type bigWig 1.000000 261683.000000\ wgEncodeHaibTfbsK562Cbx3sc101004V0422111PkRep2 K562 CBX3 V11 2 broadPeak K562 CBX3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 345 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CBX3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 CBX3 V11 2\ subGroups view=Peaks factor=CBX3SC101004 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Cbx3sc101004V0422111PkRep2\ type broadPeak\ wgEncodeSydhTfbsK562Znf274UcdPk K562 Z274 UCD narrowPeak K562 ZNF274 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 345 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ZNF274 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks on\ shortLabel K562 Z274 UCD\ subGroups view=Peaks factor=ZNF274 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Znf274UcdPk\ type narrowPeak\ wgEncodeUwTfbsSaecCtcfStdHotspotsRep2 SAEC CTCF Ht 2 broadPeak SAEC CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 345 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel SAEC CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3SAEC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsSaecCtcfStdHotspotsRep2\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_ctss_fwd Tc:ARPE-19Emt_06hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_forward 0 345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep1.CNhs14519.13664-147D1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13664-147D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_06hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_tpm_fwd Tc:ARPE-19Emt_06hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_forward 1 345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep1.CNhs14519.13664-147D1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13664-147D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_06hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k27acSig Dnd41 H3K27ac bigWig 0.040000 33808.558594 Dnd41 H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 346 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Dnd41 H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Dnd41 H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k27acSig\ type bigWig 0.040000 33808.558594\ wgEncodeUwHistoneH7esH3k36me3StdDiffa14dPkRep2 H7ES H3K36M3 Pk 2 narrowPeak H7-hESC H3K36me3 diffProtA 14 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 346 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 diffProtA 14 d Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K36M3 Pk 2\ subGroups view=Peaks factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep2\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa14dPkRep2\ type narrowPeak\ wgEncodeAwgTfbsSydhHelas3Ini1IggmusUniPk HeLa-S3 SMARCB1 narrowPeak HeLa-S3 TFBS Uniform Peaks of Ini1 from ENCODE/Stanford/Analysis 1 346 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of Ini1 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 SMARCB1\ subGroups tier=a20 cellType=a20HELAS3 factor=SMARCB1 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Ini1IggmusUniPk\ encTfChipPkENCFF950HDR HepG2 ATM narrowPeak Transcription Factor ChIP-seq Peaks of ATM in HepG2 from ENCODE 3 (ENCFF950HDR) 1 346 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ATM in HepG2 from ENCODE 3 (ENCFF950HDR)\ parent encTfChipPk off\ shortLabel HepG2 ATM\ subGroups cellType=HepG2 factor=ATM\ track encTfChipPkENCFF950HDR\ wgEncodeRikenCageHmscatCellPapAlnRep1 hMAT cell pA+ A 1 bam hMSC-AT whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 346 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-AT whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel hMAT cell pA+ A 1\ subGroups view=Alignments cellType=t3HMSCAT localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHmscatCellPapAlnRep1\ type bam\ wgEncodeCshlShortRnaSeqHmscucCellTapMinusRep1 hMUC cell TAP - 1 bigWig 1.000000 45376876.000000 hMSC-UC TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 346 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-UC TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel hMUC cell TAP - 1\ subGroups view=MinusSignal cellType=t3HMSCUC localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHmscucCellTapMinusRep1\ type bigWig 1.000000 45376876.000000\ wgEncodeUwDnaseHmvecdblneoHotspotsRep2 HMVECdBlNeo Ht 2 broadPeak HMVEC-dBl-Neo DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 346 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dBl-Neo DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMVECdBlNeo Ht 2\ subGroups view=Hot cellType=t3HMVECDBLNEO rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdblneoHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqImr90CellPapAlnRep1 IMR90 cel pA+ A 1 bam IMR90 whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 346 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel IMR90 cel pA+ A 1\ subGroups view=Alignments cellType=t2IMR90 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqImr90CellPapAlnRep1\ type bam\ wgEncodeHaibTfbsK562Cbx3sc101004V0422111RawRep2 K562 CBX3 V11 2 bigWig 0.102840 197.350998 K562 CBX3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 346 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CBX3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 CBX3 V11 2\ subGroups view=RawSignal factor=CBX3SC101004 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Cbx3sc101004V0422111RawRep2\ type bigWig 0.102840 197.350998\ wgEncodeSydhTfbsK562Znf274UcdSig K562 Z274 UCD bigWig 0.000000 20990.199219 K562 ZNF274 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 346 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ZNF274 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal on\ shortLabel K562 Z274 UCD\ subGroups view=Signal factor=ZNF274 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Znf274UcdSig\ type bigWig 0.000000 20990.199219\ wgEncodeUwTfbsSaecCtcfStdPkRep2 SAEC CTCF Pk 2 narrowPeak SAEC CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 346 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel SAEC CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3SAEC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsSaecCtcfStdPkRep2\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_ctss_rev Tc:ARPE-19Emt_06hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_reverse 0 346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep1.CNhs14519.13664-147D1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13664-147D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_06hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_tpm_rev Tc:ARPE-19Emt_06hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_reverse 1 346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep1.CNhs14519.13664-147D1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13664-147D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_06hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k27me3Pk Dnd41 H3K27m3 broadPeak Dnd41 H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 347 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Dnd41 H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Dnd41 H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k27me3Pk\ type broadPeak\ wgEncodeUwHistoneH7esH3k36me3StdDiffa14dRawRep2 H7ES H3K36M3 Sg 2 bigWig 1.000000 7137.000000 H7-hESC H3K36me3 diffProtA 14 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 347 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K36me3 diffProtA 14 d Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K36M3 Sg 2\ subGroups view=zRSig factor=H3K36ME3 cellType=t3H7HESC treatment=DIFFA14D rep=rep2\ track wgEncodeUwHistoneH7esH3k36me3StdDiffa14dRawRep2\ type bigWig 1.000000 7137.000000\ wgEncodeAwgTfbsSydhHelas3Baf155IggmusUniPk HeLa-S3 SMARCC1 narrowPeak HeLa-S3 TFBS Uniform Peaks of BAF155 from ENCODE/Stanford/Analysis 1 347 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of BAF155 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 SMARCC1\ subGroups tier=a20 cellType=a20HELAS3 factor=SMARCC1 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Baf155IggmusUniPk\ encTfChipPkENCFF028BDC HepG2 BHLHE40 1 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in HepG2 from ENCODE 3 (ENCFF028BDC) 1 347 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in HepG2 from ENCODE 3 (ENCFF028BDC)\ parent encTfChipPk off\ shortLabel HepG2 BHLHE40 1\ subGroups cellType=HepG2 factor=BHLHE40\ track encTfChipPkENCFF028BDC\ wgEncodeRikenCageHmscatCellPapAlnRep2 hMAT cell pA+ A 2 bam hMSC-AT whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 347 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-AT whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel hMAT cell pA+ A 2\ subGroups view=Alignments cellType=t3HMSCAT localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHmscatCellPapAlnRep2\ type bam\ wgEncodeCshlShortRnaSeqHmscucCellTapMinusRep2 hMUC cell TAP - 2 bigWig 1.000000 49881228.000000 hMSC-UC TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 347 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-UC TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel hMUC cell TAP - 2\ subGroups view=MinusSignal cellType=t3HMSCUC localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHmscucCellTapMinusRep2\ type bigWig 1.000000 49881228.000000\ wgEncodeUwDnaseHmvecdblneoPkRep2 HMVECdBlNeo Pk 2 narrowPeak HMVEC-dBl-Neo DNaseI HS Peaks Rep 2 from ENCODE/UW 1 347 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dBl-Neo DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMVECdBlNeo Pk 2\ subGroups view=Peaks cellType=t3HMVECDBLNEO rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdblneoPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqImr90CellPapAlnRep2 IMR90 cel pA+ A 2 bam IMR90 whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 347 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel IMR90 cel pA+ A 2\ subGroups view=Alignments cellType=t2IMR90 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqImr90CellPapAlnRep2\ type bam\ wgEncodeHaibTfbsK562Cebpbsc150V0422111PkRep1 K562 CEBPB V11 1 broadPeak K562 CEBPB v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 347 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CEBPB v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 CEBPB V11 1\ subGroups view=Peaks factor=CEBPB cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Cebpbsc150V0422111PkRep1\ type broadPeak\ wgEncodeSydhTfbsK562Znf274m01UcdPk K562 Z274M UCD narrowPeak K562 ZNF274 (M01) UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 347 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ZNF274 (M01) UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 Z274M UCD\ subGroups view=Peaks factor=ZNF274M01 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Znf274m01UcdPk\ type narrowPeak\ wgEncodeUwTfbsSaecCtcfStdRawRep2 SAEC CTCF Sg 2 bigWig 1.000000 2175.000000 SAEC CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 347 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SAEC CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel SAEC CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3SAEC rep=rep2 treatment=aNone\ track wgEncodeUwTfbsSaecCtcfStdRawRep2\ type bigWig 1.000000 2175.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_ctss_fwd Tc:ARPE-19Emt_06hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_forward 0 347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep3.CNhs14522.13666-147D3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13666-147D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_06hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_tpm_fwd Tc:ARPE-19Emt_06hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_forward 1 347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep3.CNhs14522.13666-147D3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13666-147D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_06hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k27me3Sig Dnd41 H3K27m3 bigWig 0.040000 26996.960938 Dnd41 H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 348 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Dnd41 H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Dnd41 H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k27me3Sig\ type bigWig 0.040000 26996.960938\ wgEncodeUwHistoneH7esH3k36me3StdHotspotsRep1 H7ES H3K36M3 Ht 1 broadPeak H7-hESC H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 348 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K36M3 Ht 1\ subGroups view=Hot factor=H3K36ME3 cellType=t3H7HESC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneH7esH3k36me3StdHotspotsRep1\ type broadPeak\ wgEncodeAwgTfbsSydhHelas3Baf170IggmusUniPk HeLa-S3 SMARCC2 narrowPeak HeLa-S3 TFBS Uniform Peaks of BAF170 from ENCODE/Stanford/Analysis 1 348 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of BAF170 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 SMARCC2\ subGroups tier=a20 cellType=a20HELAS3 factor=SMARCC2 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Baf170IggmusUniPk\ encTfChipPkENCFF108RWG HepG2 BHLHE40 2 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in HepG2 from ENCODE 3 (ENCFF108RWG) 1 348 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in HepG2 from ENCODE 3 (ENCFF108RWG)\ parent encTfChipPk off\ shortLabel HepG2 BHLHE40 2\ subGroups cellType=HepG2 factor=BHLHE40\ track encTfChipPkENCFF108RWG\ wgEncodeRikenCageHmscbmCellPapTssHmm hMBM cell pA+ bed 6 hMSC-BM whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 348 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-BM whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel hMBM cell pA+\ subGroups view=TssHmm cellType=t3HMSCBM localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHmscbmCellPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqHmscucCellTapPlusRep1 hMUC cell TAP + 1 bigWig 1.000000 7229470.000000 hMSC-UC TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 348 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-UC TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel hMUC cell TAP + 1\ subGroups view=PlusSignal cellType=t3HMSCUC localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHmscucCellTapPlusRep1\ type bigWig 1.000000 7229470.000000\ wgEncodeUwDnaseHmvecdblneoRawRep2 HMVECdBlNeo Sg 2 bigWig 1.000000 46139.000000 HMVEC-dBl-Neo DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 348 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dBl-Neo DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMVECdBlNeo Sg 2\ subGroups view=zRSig cellType=t3HMVECDBLNEO rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdblneoRawRep2\ type bigWig 1.000000 46139.000000\ wgEncodeCshlLongRnaSeqImr90CellPapContigs IMR90 cel pA+ C bed 6 + IMR90 whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 348 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel IMR90 cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2IMR90 localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqImr90CellPapContigs\ type bed 6 +\ wgEncodeHaibTfbsK562Cebpbsc150V0422111RawRep1 K562 CEBPB V11 1 bigWig 0.108888 173.078003 K562 CEBPB v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 348 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CEBPB v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 CEBPB V11 1\ subGroups view=RawSignal factor=CEBPB cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Cebpbsc150V0422111RawRep1\ type bigWig 0.108888 173.078003\ wgEncodeSydhTfbsK562Znf274m01UcdSig K562 Z274M UCD bigWig 1.000000 32880.000000 K562 ZNF274 (M01) UC Davis ChIP-seq Signal from ENCODE/SYDH 2 348 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ZNF274 (M01) UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 Z274M UCD\ subGroups view=Signal factor=ZNF274M01 cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562Znf274m01UcdSig\ type bigWig 1.000000 32880.000000\ wgEncodeUwTfbsSaecInputStdRawRep1 SAEC In Sg 1 bigWig 1.000000 8873.000000 SAEC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 348 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SAEC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel SAEC In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3SAEC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsSaecInputStdRawRep1\ type bigWig 1.000000 8873.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_ctss_rev Tc:ARPE-19Emt_06hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_reverse 0 348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep3.CNhs14522.13666-147D3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13666-147D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_06hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_tpm_rev Tc:ARPE-19Emt_06hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_reverse 1 348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep3.CNhs14522.13666-147D3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13666-147D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_06hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k36me3Pk Dnd41 H3K36m3 broadPeak Dnd41 H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 349 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Dnd41 H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Dnd41 H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k36me3Pk\ type broadPeak\ wgEncodeUwHistoneH7esH3k36me3StdPkRep1 H7ES H3K36M3 Pk 1 narrowPeak H7-hESC H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 349 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K36M3 Pk 1\ subGroups view=Peaks factor=H3K36ME3 cellType=t3H7HESC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneH7esH3k36me3StdPkRep1\ type narrowPeak\ wgEncodeAwgTfbsSydhHelas3Smc3ab9263IggrabUniPk HeLa-S3 SMC3 narrowPeak HeLa-S3 TFBS Uniform Peaks of SMC3_(ab9263) from ENCODE/Stanford/Analysis 1 349 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of SMC3_(ab9263) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 SMC3\ subGroups tier=a20 cellType=a20HELAS3 factor=SMC3 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Smc3ab9263IggrabUniPk\ encTfChipPkENCFF775PPJ HepG2 BRCA1 narrowPeak Transcription Factor ChIP-seq Peaks of BRCA1 in HepG2 from ENCODE 3 (ENCFF775PPJ) 1 349 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of BRCA1 in HepG2 from ENCODE 3 (ENCFF775PPJ)\ parent encTfChipPk off\ shortLabel HepG2 BRCA1\ subGroups cellType=HepG2 factor=BRCA1\ track encTfChipPkENCFF775PPJ\ wgEncodeRikenCageHmscbmCellPapPlusRawRep1 hMBM cell pA+ + 1 bigWig 1.000000 191480.000000 hMSC-BM whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 349 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-BM whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel hMBM cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3HMSCBM localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHmscbmCellPapPlusRawRep1\ type bigWig 1.000000 191480.000000\ wgEncodeCshlShortRnaSeqHmscucCellTapPlusRep2 hMUC cell TAP + 2 bigWig 1.000000 8190606.000000 hMSC-UC TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 349 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-UC TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel hMUC cell TAP + 2\ subGroups view=PlusSignal cellType=t3HMSCUC localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHmscucCellTapPlusRep2\ type bigWig 1.000000 8190606.000000\ wgEncodeUwDnaseHmvecdlyadHotspotsRep1 HMVECdLyAd Ht 1 broadPeak HMVEC-dLy-Ad DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 349 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dLy-Ad DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMVECdLyAd Ht 1\ subGroups view=Hot cellType=t3HMVECDLYAD rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdlyadHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqImr90CellPapJunctions IMR90 cel pA+ J bed 6 + IMR90 whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 349 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel IMR90 cel pA+ J\ subGroups view=Junctions cellType=t2IMR90 localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqImr90CellPapJunctions\ type bed 6 +\ wgEncodeHaibTfbsK562Cebpbsc150V0422111PkRep2 K562 CEBPB V11 2 broadPeak K562 CEBPB v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 349 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CEBPB v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 CEBPB V11 2\ subGroups view=Peaks factor=CEBPB cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Cebpbsc150V0422111PkRep2\ type broadPeak\ wgEncodeSydhTfbsK562Znf384hpa004051IggrabPk K562 ZNF384 IgR narrowPeak K562 ZNF384 (HPA004051) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 349 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ZNF384 (HPA004051) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 ZNF384 IgR\ subGroups view=Peaks factor=ZNF384HPA004051 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Znf384hpa004051IggrabPk\ type narrowPeak\ wgEncodeUwTfbsSkmcInputStdRawRep1 SKMC In Sg 1 bigWig 1.000000 16362.000000 SKMC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 349 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SKMC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel SKMC In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3SKMC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsSkmcInputStdRawRep1\ type bigWig 1.000000 16362.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_ctss_fwd Tc:ARPE-19Emt_07hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_forward 0 349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep1.CNhs14523.13667-147D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13667-147D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_tpm_fwd Tc:ARPE-19Emt_07hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_forward 1 349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep1.CNhs14523.13667-147D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13667-147D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k36me3Sig Dnd41 H3K36m3 bigWig 0.040000 25748.720703 Dnd41 H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 350 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Dnd41 H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Dnd41 H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k36me3Sig\ type bigWig 0.040000 25748.720703\ wgEncodeUwHistoneH7esH3k36me3StdRawRep1 H7ES H3K36M3 Sg 1 bigWig 1.000000 5084.000000 H7-hESC H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 350 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K36M3 Sg 1\ subGroups view=zRSig factor=H3K36ME3 cellType=t3H7HESC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneH7esH3k36me3StdRawRep1\ type bigWig 1.000000 5084.000000\ wgEncodeAwgTfbsSydhHelas3Stat1Ifng30UniPk HeLa-S3+IFg STAT1 narrowPeak HeLa-S3 (IFNg30) TFBS Uniform Peaks of STAT1 from ENCODE/Yale/Analysis 1 350 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 (IFNg30) TFBS Uniform Peaks of STAT1 from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3+IFg STAT1\ subGroups tier=a20 cellType=a20HELAS3 factor=STAT1 lab=Yale\ track wgEncodeAwgTfbsSydhHelas3Stat1Ifng30UniPk\ encTfChipPkENCFF665CIR HepG2 BRD4 narrowPeak Transcription Factor ChIP-seq Peaks of BRD4 in HepG2 from ENCODE 3 (ENCFF665CIR) 1 350 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of BRD4 in HepG2 from ENCODE 3 (ENCFF665CIR)\ parent encTfChipPk off\ shortLabel HepG2 BRD4\ subGroups cellType=HepG2 factor=BRD4\ track encTfChipPkENCFF665CIR\ wgEncodeRikenCageHmscbmCellPapPlusRawRep2 hMBM cell pA+ + 2 bigWig 1.000000 104869.000000 hMSC-BM whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 350 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-BM whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel hMBM cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3HMSCBM localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHmscbmCellPapPlusRawRep2\ type bigWig 1.000000 104869.000000\ wgEncodeUwDnaseHmvecdlyadPkRep1 HMVECdLyAd Pk 1 narrowPeak HMVEC-dLy-Ad DNaseI HS Peaks Rep 1 from ENCODE/UW 1 350 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dLy-Ad DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMVECdLyAd Pk 1\ subGroups view=Peaks cellType=t3HMVECDLYAD rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdlyadPkRep1\ type narrowPeak\ wgEncodeCshlShortRnaSeqHobCellTapContigs HOB cell TAP C bed 6 HOB TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 350 0 0 0 127 127 127 0 0 0 expression 1 longLabel HOB TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HOB cell TAP C\ subGroups view=Contigs cellType=t3HOB localization=CELL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqHobCellTapContigs\ type bed 6\ wgEncodeCshlLongRnaSeqImr90CellPapMinusRep1 IMR90 cel pA+ - 1 bigWig 1.000000 300454.000000 IMR90 whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 350 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel IMR90 cel pA+ - 1\ subGroups view=MinusSignal cellType=t2IMR90 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqImr90CellPapMinusRep1\ type bigWig 1.000000 300454.000000\ wgEncodeHaibTfbsK562Cebpbsc150V0422111RawRep2 K562 CEBPB V11 2 bigWig 0.607596 125.924004 K562 CEBPB v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 350 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CEBPB v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 CEBPB V11 2\ subGroups view=RawSignal factor=CEBPB cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Cebpbsc150V0422111RawRep2\ type bigWig 0.607596 125.924004\ wgEncodeSydhTfbsK562Znf384hpa004051IggrabSig K562 ZNF384 IgR bigWig 1.000000 14680.000000 K562 ZNF384 (HPA004051) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 350 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ZNF384 (HPA004051) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 ZNF384 IgR\ subGroups view=Signal factor=ZNF384HPA004051 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Znf384hpa004051IggrabSig\ type bigWig 1.000000 14680.000000\ wgEncodeUwTfbsSknmcInputStdRawRep1 SKNMC In Sg 1 bigWig 1.000000 15364.000000 SK-N-MC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 350 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-MC Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel SKNMC In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3SKNMC rep=rep1 treatment=aNone\ track wgEncodeUwTfbsSknmcInputStdRawRep1\ type bigWig 1.000000 15364.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_ctss_rev Tc:ARPE-19Emt_07hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_reverse 0 350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep1.CNhs14523.13667-147D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13667-147D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_tpm_rev Tc:ARPE-19Emt_07hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_reverse 1 350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep1.CNhs14523.13667-147D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13667-147D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k79me2Pk Dnd41 H3K79m2 broadPeak Dnd41 H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 351 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Dnd41 H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Dnd41 H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k79me2Pk\ type broadPeak\ wgEncodeUwHistoneH7esH3k36me3StdHotspotsRep2 H7ES H3K36M3 Ht 2 broadPeak H7-hESC H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 351 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel H7ES H3K36M3 Ht 2\ subGroups view=Hot factor=H3K36ME3 cellType=t3H7HESC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneH7esH3k36me3StdHotspotsRep2\ type broadPeak\ wgEncodeAwgTfbsSydhHelas3Stat3IggrabUniPk HeLa-S3 STAT3 narrowPeak HeLa-S3 TFBS Uniform Peaks of STAT3 from ENCODE/Stanford/Analysis 1 351 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of STAT3 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 STAT3\ subGroups tier=a20 cellType=a20HELAS3 factor=STAT3 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Stat3IggrabUniPk\ encTfChipPkENCFF928KZS HepG2 CBX2 narrowPeak Transcription Factor ChIP-seq Peaks of CBX2 in HepG2 from ENCODE 3 (ENCFF928KZS) 1 351 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of CBX2 in HepG2 from ENCODE 3 (ENCFF928KZS)\ parent encTfChipPk off\ shortLabel HepG2 CBX2\ subGroups cellType=HepG2 factor=CBX2\ track encTfChipPkENCFF928KZS\ wgEncodeRikenCageHmscbmCellPapMinusRawRep1 hMBM cell pA+ - 1 bigWig 1.000000 170796.000000 hMSC-BM whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 351 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-BM whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel hMBM cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3HMSCBM localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHmscbmCellPapMinusRawRep1\ type bigWig 1.000000 170796.000000\ wgEncodeUwDnaseHmvecdlyadRawRep1 HMVECdLyAd Sg 1 bigWig 1.000000 86195.000000 HMVEC-dLy-Ad DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 351 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dLy-Ad DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMVECdLyAd Sg 1\ subGroups view=zRSig cellType=t3HMVECDLYAD rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdlyadRawRep1\ type bigWig 1.000000 86195.000000\ wgEncodeCshlShortRnaSeqHobCellTapMinusRawRep1 HOB cell TAP - 1 bigWig 1.000000 7725804.000000 HOB TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 351 0 0 0 127 127 127 0 0 0 expression 0 longLabel HOB TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HOB cell TAP - 1\ subGroups view=MinusSignal cellType=t3HOB localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHobCellTapMinusRawRep1\ type bigWig 1.000000 7725804.000000\ wgEncodeCshlLongRnaSeqImr90CellPapMinusRep2 IMR90 cel pA+ - 2 bigWig 1.000000 238947.000000 IMR90 whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 351 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel IMR90 cel pA+ - 2\ subGroups view=MinusSignal cellType=t2IMR90 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqImr90CellPapMinusRep2\ type bigWig 1.000000 238947.000000\ wgEncodeHaibTfbsK562Cebpdsc636V0422111PkRep1 K562 CEBPD V11 1 broadPeak K562 CEBPD v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIBd 3 351 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CEBPD v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIBd\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 CEBPD V11 1\ subGroups view=Peaks factor=CEBPDSC636 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Cebpdsc636V0422111PkRep1\ type broadPeak\ wgEncodeSydhTfbsK562Znfmizdcp1ab65767IggrabPk K562 ZNF-MIZD IgR narrowPeak K562 ZNF-MIZD-CP1 (ab65767) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 351 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ZNF-MIZD-CP1 (ab65767) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel K562 ZNF-MIZD IgR\ subGroups view=Peaks factor=ZNFMIZDCP1AB65767 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Znfmizdcp1ab65767IggrabPk\ type narrowPeak\ wgEncodeUwTfbsSknshraCtcfStdHotspotsRep1 SKRA CTCF Ht 1 broadPeak SK-N-SH_RA CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 351 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel SKRA CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3SKNSHRA rep=rep1 treatment=aNone\ track wgEncodeUwTfbsSknshraCtcfStdHotspotsRep1\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_ctss_fwd Tc:ARPE-19Emt_07hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_forward 0 351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep2.CNhs14524.13668-147D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13668-147D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_tpm_fwd Tc:ARPE-19Emt_07hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_forward 1 351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep2.CNhs14524.13668-147D5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13668-147D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H3k79me2Sig Dnd41 H3K79m2 bigWig 0.040000 9223.959961 Dnd41 H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 352 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Dnd41 H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Dnd41 H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H3k79me2Sig\ type bigWig 0.040000 9223.959961\ wgEncodeUwHistoneH7esH3k36me3StdPkRep2 H7ES H3K36M3 Pk 2 narrowPeak H7-hESC H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 352 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H7-hESC H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel H7ES H3K36M3 Pk 2\ subGroups view=Peaks factor=H3K36ME3 cellType=t3H7HESC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneH7esH3k36me3StdPkRep2\ type narrowPeak\ wgEncodeAwgTfbsHaibHelas3Taf1Pcr1xUniPk HeLa-S3 TAF1 narrowPeak HeLa-S3 TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis 1 352 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 TAF1\ subGroups tier=a20 cellType=a20HELAS3 factor=TAF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHelas3Taf1Pcr1xUniPk\ encTfChipPkENCFF671IJY HepG2 CCAR2 narrowPeak Transcription Factor ChIP-seq Peaks of CCAR2 in HepG2 from ENCODE 3 (ENCFF671IJY) 1 352 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of CCAR2 in HepG2 from ENCODE 3 (ENCFF671IJY)\ parent encTfChipPk off\ shortLabel HepG2 CCAR2\ subGroups cellType=HepG2 factor=CCAR2\ track encTfChipPkENCFF671IJY\ wgEncodeRikenCageHmscbmCellPapMinusRawRep2 hMBM cell pA+ - 2 bigWig 1.000000 140620.000000 hMSC-BM whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 352 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-BM whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel hMBM cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3HMSCBM localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHmscbmCellPapMinusRawRep2\ type bigWig 1.000000 140620.000000\ wgEncodeUwDnaseHmvecdlyadHotspotsRep2 HMVECdLyAd Ht 2 broadPeak HMVEC-dLy-Ad DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 352 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dLy-Ad DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMVECdLyAd Ht 2\ subGroups view=Hot cellType=t3HMVECDLYAD rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdlyadHotspotsRep2\ type broadPeak\ wgEncodeCshlShortRnaSeqHob00902021CellShorttotalTapMinusRep2 HOB cell TAP - 2 bigWig 1.000000 20368200.000000 HOB TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 352 0 0 0 127 127 127 0 0 0 expression 0 longLabel HOB TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HOB cell TAP - 2\ subGroups view=MinusSignal cellType=t3HOB localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHob00902021CellShorttotalTapMinusRep2\ type bigWig 1.000000 20368200.000000\ wgEncodeCshlLongRnaSeqImr90CellPapPlusRep1 IMR90 cel pA+ + 1 bigWig 1.000000 423262.000000 IMR90 whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 352 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel IMR90 cel pA+ + 1\ subGroups view=PlusSignal cellType=t2IMR90 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqImr90CellPapPlusRep1\ type bigWig 1.000000 423262.000000\ wgEncodeHaibTfbsK562Cebpdsc636V0422111RawRep1 K562 CEBPD V11 1 bigWig 1.000000 3435.000000 K562 CEBPD v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIBd 2 352 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CEBPD v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIBd\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 CEBPD V11 1\ subGroups view=RawSignal factor=CEBPDSC636 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Cebpdsc636V0422111RawRep1\ type bigWig 1.000000 3435.000000\ wgEncodeSydhTfbsK562Znfmizdcp1ab65767IggrabSig K562 ZNF-MIZD IgR bigWig 1.000000 17101.000000 K562 ZNF-MIZD-CP1 (ab65767) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 352 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ZNF-MIZD-CP1 (ab65767) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 ZNF-MIZD IgR\ subGroups view=Signal factor=ZNFMIZDCP1AB65767 cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562Znfmizdcp1ab65767IggrabSig\ type bigWig 1.000000 17101.000000\ wgEncodeUwTfbsSknshraCtcfStdPkRep1 SKRA CTCF Pk 1 narrowPeak SK-N-SH_RA CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 352 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel SKRA CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3SKNSHRA rep=rep1 treatment=aNone\ track wgEncodeUwTfbsSknshraCtcfStdPkRep1\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_ctss_rev Tc:ARPE-19Emt_07hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_reverse 0 352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep2.CNhs14524.13668-147D5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13668-147D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_tpm_rev Tc:ARPE-19Emt_07hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_reverse 1 352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep2.CNhs14524.13668-147D5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13668-147D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H4k20me1Pk Dnd41 H4K20m1 broadPeak Dnd41 H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 353 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Dnd41 H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Dnd41 H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H4k20me1Pk\ type broadPeak\ wgEncodeUwHistoneH7esH3k36me3StdRawRep2 H7ES H3K36M3 Sg 2 bigWig 1.000000 5883.000000 H7-hESC H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 353 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES H3K36M3 Sg 2\ subGroups view=zRSig factor=H3K36ME3 cellType=t3H7HESC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneH7esH3k36me3StdRawRep2\ type bigWig 1.000000 5883.000000\ wgEncodeAwgTfbsSydhHelas3TbpIggrabUniPk HeLa-S3 TBP narrowPeak HeLa-S3 TFBS Uniform Peaks of TBP from ENCODE/Stanford/Analysis 1 353 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of TBP from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 TBP\ subGroups tier=a20 cellType=a20HELAS3 factor=TBP lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3TbpIggrabUniPk\ encTfChipPkENCFF471HCD HepG2 CEBPB 1 narrowPeak Transcription Factor ChIP-seq Peaks of CEBPB in HepG2 from ENCODE 3 (ENCFF471HCD) 1 353 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of CEBPB in HepG2 from ENCODE 3 (ENCFF471HCD)\ parent encTfChipPk off\ shortLabel HepG2 CEBPB 1\ subGroups cellType=HepG2 factor=CEBPB\ track encTfChipPkENCFF471HCD\ wgEncodeRikenCageHmscbmCellPapAlnRep1 hMBM cell pA+ A 1 bam hMSC-BM whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 353 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-BM whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel hMBM cell pA+ A 1\ subGroups view=Alignments cellType=t3HMSCBM localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHmscbmCellPapAlnRep1\ type bam\ wgEncodeUwDnaseHmvecdlyadPkRep2 HMVECdLyAd Pk 2 narrowPeak HMVEC-dLy-Ad DNaseI HS Peaks Rep 2 from ENCODE/UW 1 353 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dLy-Ad DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMVECdLyAd Pk 2\ subGroups view=Peaks cellType=t3HMVECDLYAD rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdlyadPkRep2\ type narrowPeak\ wgEncodeCshlShortRnaSeqHobCellTapPlusRawRep1 HOB cell TAP + 1 bigWig 1.000000 3212282.000000 HOB TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 353 0 0 0 127 127 127 0 0 0 expression 0 longLabel HOB TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HOB cell TAP + 1\ subGroups view=PlusSignal cellType=t3HOB localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHobCellTapPlusRawRep1\ type bigWig 1.000000 3212282.000000\ wgEncodeCshlLongRnaSeqImr90CellPapPlusRep2 IMR90 cel pA+ + 2 bigWig 1.000000 261016.000000 IMR90 whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 353 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel IMR90 cel pA+ + 2\ subGroups view=PlusSignal cellType=t2IMR90 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqImr90CellPapPlusRep2\ type bigWig 1.000000 261016.000000\ wgEncodeHaibTfbsK562Cebpdsc636V0422111PkRep2 K562 CEBPD V11 2 broadPeak K562 CEBPD v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIBd 3 353 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CEBPD v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIBd\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 CEBPD V11 2\ subGroups view=Peaks factor=CEBPDSC636 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Cebpdsc636V0422111PkRep2\ type broadPeak\ wgEncodeSydhTfbsK562InputIggmusSig K562 Inpt IgM bigWig 0.000000 9144.400391 K562 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 353 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 Inpt IgM\ subGroups view=Signal factor=ZZZINPUTIGGmus cellType=t1K562 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsK562InputIggmusSig\ type bigWig 0.000000 9144.400391\ wgEncodeUwTfbsSknshraCtcfStdRawRep1 SKRA CTCF Sg 1 bigWig 1.000000 3210.000000 SK-N-SH_RA CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 353 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH_RA CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel SKRA CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3SKNSHRA rep=rep1 treatment=aNone\ track wgEncodeUwTfbsSknshraCtcfStdRawRep1\ type bigWig 1.000000 3210.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_ctss_fwd Tc:ARPE-19Emt_07hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_forward 0 353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep3.CNhs14525.13669-147D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13669-147D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_tpm_fwd Tc:ARPE-19Emt_07hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_forward 1 353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep3.CNhs14525.13669-147D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13669-147D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41H4k20me1Sig Dnd41 H4K20m1 bigWig 0.040000 21112.240234 Dnd41 H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 354 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Dnd41 H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Dnd41 H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41H4k20me1Sig\ type bigWig 0.040000 21112.240234\ wgEncodeUwHistoneH7esInputStdDiffa2dRawRep1 H7ES In Sg 1 bigWig 1.000000 9642.000000 H7-hESC Input diffProtA 2 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 354 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC Input diffProtA 2 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3H7HESC treatment=DIFFA02D rep=rep1\ track wgEncodeUwHistoneH7esInputStdDiffa2dRawRep1\ type bigWig 1.000000 9642.000000\ wgEncodeAwgTfbsSydhHelas3Tcf7l2UcdUniPk HeLa-S3 TCF7L2 c narrowPeak HeLa-S3 TFBS Uniform Peaks of TCF7L2 from ENCODE/USC/Analysis 1 354 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of TCF7L2 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 TCF7L2 c\ subGroups tier=a20 cellType=a20HELAS3 factor=TCF7L2 lab=USC\ track wgEncodeAwgTfbsSydhHelas3Tcf7l2UcdUniPk\ encTfChipPkENCFF319IEF HepG2 CEBPB 2 narrowPeak Transcription Factor ChIP-seq Peaks of CEBPB in HepG2 from ENCODE 3 (ENCFF319IEF) 1 354 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of CEBPB in HepG2 from ENCODE 3 (ENCFF319IEF)\ parent encTfChipPk off\ shortLabel HepG2 CEBPB 2\ subGroups cellType=HepG2 factor=CEBPB\ track encTfChipPkENCFF319IEF\ wgEncodeRikenCageHmscbmCellPapAlnRep2 hMBM cell pA+ A 2 bam hMSC-BM whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 354 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-BM whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel hMBM cell pA+ A 2\ subGroups view=Alignments cellType=t3HMSCBM localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHmscbmCellPapAlnRep2\ type bam\ wgEncodeUwDnaseHmvecdlyadRawRep2 HMVECdLyAd Sg 2 bigWig 1.000000 63735.000000 HMVEC-dLy-Ad DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 354 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dLy-Ad DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMVECdLyAd Sg 2\ subGroups view=zRSig cellType=t3HMVECDLYAD rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdlyadRawRep2\ type bigWig 1.000000 63735.000000\ wgEncodeCshlShortRnaSeqHob00902021CellShorttotalTapPlusRep2 HOB cell TAP + 2 bigWig 1.000000 5685109.000000 HOB TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 354 0 0 0 127 127 127 0 0 0 expression 0 longLabel HOB TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HOB cell TAP + 2\ subGroups view=PlusSignal cellType=t3HOB localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHob00902021CellShorttotalTapPlusRep2\ type bigWig 1.000000 5685109.000000\ wgEncodeCshlLongRnaSeqImr90CellTotalAlnRep1 IMR90 cel tot A 1 bam IMR90 whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 354 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel IMR90 cel tot A 1\ subGroups view=Alignments cellType=t2IMR90 localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqImr90CellTotalAlnRep1\ type bam\ wgEncodeHaibTfbsK562Cebpdsc636V0422111RawRep2 K562 CEBPD V11 2 bigWig 1.000000 2958.000000 K562 CEBPD v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIBd 2 354 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CEBPD v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIBd\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 CEBPD V11 2\ subGroups view=RawSignal factor=CEBPDSC636 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Cebpdsc636V0422111RawRep2\ type bigWig 1.000000 2958.000000\ wgEncodeSydhTfbsK562InputIggrabSig K562 Inpt IgR bigWig 0.000000 8156.000000 K562 Input IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 354 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Input IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t1K562 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsK562InputIggrabSig\ type bigWig 0.000000 8156.000000\ wgEncodeUwTfbsSknshraCtcfStdHotspotsRep2 SKRA CTCF Ht 2 broadPeak SK-N-SH_RA CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 354 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel SKRA CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3SKNSHRA rep=rep2 treatment=aNone\ track wgEncodeUwTfbsSknshraCtcfStdHotspotsRep2\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_ctss_rev Tc:ARPE-19Emt_07hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_reverse 0 354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep3.CNhs14525.13669-147D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13669-147D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_tpm_rev Tc:ARPE-19Emt_07hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_reverse 1 354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep3.CNhs14525.13669-147D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13669-147D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneDnd41ControlStdSig Dnd41 Input bigWig 0.040000 56285.160156 Dnd41 Input Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 355 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Dnd41 Input Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Dnd41 Input\ subGroups view=Signal factor=zCTRL cellType=t3DND41 treatment=zNONE\ track wgEncodeBroadHistoneDnd41ControlStdSig\ type bigWig 0.040000 56285.160156\ wgEncodeUwHistoneH7esInputStdDiffa5dRawRep1 H7ES In Sg 1 bigWig 1.000000 10821.000000 H7-hESC Input diffProtA 5 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 355 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC Input diffProtA 5 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3H7HESC treatment=DIFFA05D rep=rep1\ track wgEncodeUwHistoneH7esInputStdDiffa5dRawRep1\ type bigWig 1.000000 10821.000000\ wgEncodeAwgTfbsSydhHelas3Tcf7l2c9b92565UcdUniPk HeLa-S3 TCF7L2 c2 narrowPeak HeLa-S3 TFBS Uniform Peaks of TCF7L2_C9B9_(2565) from ENCODE/USC/Analysis 1 355 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of TCF7L2_C9B9_(2565) from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 TCF7L2 c2\ subGroups tier=a20 cellType=a20HELAS3 factor=TCF7L2 lab=USC\ track wgEncodeAwgTfbsSydhHelas3Tcf7l2c9b92565UcdUniPk\ encTfChipPkENCFF069RNV HepG2 CHD4 narrowPeak Transcription Factor ChIP-seq Peaks of CHD4 in HepG2 from ENCODE 3 (ENCFF069RNV) 1 355 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of CHD4 in HepG2 from ENCODE 3 (ENCFF069RNV)\ parent encTfChipPk off\ shortLabel HepG2 CHD4\ subGroups cellType=HepG2 factor=CHD4\ track encTfChipPkENCFF069RNV\ wgEncodeRikenCageHmscucCellPapTssHmm hMUC cell pA+ bed 6 hMSC-UC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 355 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-UC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel hMUC cell pA+\ subGroups view=TssHmm cellType=t3HMSCUC localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHmscucCellPapTssHmm\ type bed 6\ wgEncodeUwDnaseHmvecdlyneoHotspotsRep1 HMVECdLyNeo Ht 1 broadPeak HMVEC-dLy-Neo DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 355 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dLy-Neo DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMVECdLyNeo Ht 1\ subGroups view=Hot cellType=t3HMVECDLYNEO rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdlyneoHotspotsRep1\ type broadPeak\ wgEncodeCshlShortRnaSeqHpcplCellTapContigs HPCP cell TAP C bed 6 HPC-PL TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 355 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPC-PL TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HPCP cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t3HPCPL localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqHpcplCellTapContigs\ type bed 6\ wgEncodeCshlLongRnaSeqImr90CellTotalAlnRep2 IMR90 cel tot A 2 bam IMR90 whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 355 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel IMR90 cel tot A 2\ subGroups view=Alignments cellType=t2IMR90 localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqImr90CellTotalAlnRep2\ type bam\ wgEncodeHaibTfbsK562Creb1sc240V0422111PkRep1 K562 CREB1 V11 1 broadPeak K562 CREB1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 355 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CREB1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 CREB1 V11 1\ subGroups view=Peaks factor=CREB1SC240 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Creb1sc240V0422111PkRep1\ type broadPeak\ wgEncodeSydhTfbsK562InputIfna30StdSig K562 IFa3 Inpt Sd bigWig 0.000000 14699.599609 K562 Input Standard IFNa 30min ChIP-seq Signal from ENCODE/SYDH 2 355 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Input Standard IFNa 30min ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFa3 Inpt Sd\ subGroups view=Signal factor=ZZZINPUTSTD cellType=t1K562 control=STD treatment=IFNa30\ track wgEncodeSydhTfbsK562InputIfna30StdSig\ type bigWig 0.000000 14699.599609\ wgEncodeUwTfbsSknshraCtcfStdPkRep2 SKRA CTCF Pk 2 narrowPeak SK-N-SH_RA CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 355 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel SKRA CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3SKNSHRA rep=rep2 treatment=aNone\ track wgEncodeUwTfbsSknshraCtcfStdPkRep2\ type narrowPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_ctss_fwd Tc:ARPE-19Emt_08hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_forward 0 355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep1.CNhs14526.13670-147D7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13670-147D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_08hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_tpm_fwd Tc:ARPE-19Emt_08hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_forward 1 355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep1.CNhs14526.13670-147D7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13670-147D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneH7esInputStdDiffa9dRawRep1 H7ES In Sg 1 bigWig 1.000000 8651.000000 H7-hESC Input diffProtA 9 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 356 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC Input diffProtA 9 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3H7HESC treatment=DIFFA09D rep=rep1\ track wgEncodeUwHistoneH7esInputStdDiffa9dRawRep1\ type bigWig 1.000000 8651.000000\ wgEncodeAwgTfbsSydhHelas3Ap2alphaUniPk HeLa-S3 TFAP2A narrowPeak HeLa-S3 TFBS Uniform Peaks of AP-2alpha from ENCODE/USC/Analysis 1 356 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of AP-2alpha from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 TFAP2A\ subGroups tier=a20 cellType=a20HELAS3 factor=TFAP2A lab=USC\ track wgEncodeAwgTfbsSydhHelas3Ap2alphaUniPk\ encTfChipPkENCFF161PGD HepG2 CREB1 narrowPeak Transcription Factor ChIP-seq Peaks of CREB1 in HepG2 from ENCODE 3 (ENCFF161PGD) 1 356 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of CREB1 in HepG2 from ENCODE 3 (ENCFF161PGD)\ parent encTfChipPk off\ shortLabel HepG2 CREB1\ subGroups cellType=HepG2 factor=CREB1\ track encTfChipPkENCFF161PGD\ wgEncodeBroadHistoneHmecCtcfStdPk HMEC CTCF broadPeak HMEC CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 356 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMEC CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HMEC CTCF\ subGroups view=Peaks factor=CTCF cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecCtcfStdPk\ type broadPeak\ wgEncodeRikenCageHmscucCellPapPlusRawRep1 hMUC cell pA+ + 1 bigWig 1.000000 434574.000000 hMSC-UC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 356 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-UC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel hMUC cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3HMSCUC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHmscucCellPapPlusRawRep1\ type bigWig 1.000000 434574.000000\ wgEncodeUwDnaseHmvecdlyneoPkRep1 HMVECdLyNeo Pk 1 narrowPeak HMVEC-dLy-Neo DNaseI HS Peaks Rep 1 from ENCODE/UW 1 356 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dLy-Neo DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMVECdLyNeo Pk 1\ subGroups view=Peaks cellType=t3HMVECDLYNEO rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdlyneoPkRep1\ type narrowPeak\ wgEncodeCshlShortRnaSeqHpcplCellTapMinusRep1 HPCP cell TAP - 1 bigWig 1.000000 36839416.000000 HPC-PL TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 356 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPC-PL TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HPCP cell TAP - 1\ subGroups view=MinusSignal cellType=t3HPCPL localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHpcplCellTapMinusRep1\ type bigWig 1.000000 36839416.000000\ wgEncodeCshlLongRnaSeqImr90CellTotalContigs IMR90 cel tot C bed 6 + IMR90 whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 356 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel IMR90 cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2IMR90 localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqImr90CellTotalContigs\ type bed 6 +\ wgEncodeHaibTfbsK562Creb1sc240V0422111RawRep1 K562 CREB1 V11 1 bigWig 1.000000 4612.000000 K562 CREB1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 356 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CREB1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 CREB1 V11 1\ subGroups view=RawSignal factor=CREB1SC240 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Creb1sc240V0422111RawRep1\ type bigWig 1.000000 4612.000000\ wgEncodeSydhTfbsK562InputIfna6hStdSig K562 IFa6 Inpt Sd bigWig 0.000000 13546.700195 K562 Input Standard IFNa 6hrs ChIP-seq Signal from ENCODE/SYDH 2 356 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Input Standard IFNa 6hrs ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFa6 Inpt Sd\ subGroups view=Signal factor=ZZZINPUTSTD cellType=t1K562 control=STD treatment=IFNa6h\ track wgEncodeSydhTfbsK562InputIfna6hStdSig\ type bigWig 0.000000 13546.700195\ wgEncodeUwTfbsSknshraCtcfStdRawRep2 SKRA CTCF Sg 2 bigWig 1.000000 3470.000000 SK-N-SH_RA CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 356 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH_RA CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel SKRA CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3SKNSHRA rep=rep2 treatment=aNone\ track wgEncodeUwTfbsSknshraCtcfStdRawRep2\ type bigWig 1.000000 3470.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_ctss_rev Tc:ARPE-19Emt_08hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_reverse 0 356 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep1.CNhs14526.13670-147D7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13670-147D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_08hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_tpm_rev Tc:ARPE-19Emt_08hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_reverse 1 356 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep1.CNhs14526.13670-147D7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13670-147D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneH7esInputStdDiffa14dRawRep1 H7ES In Sg 1 bigWig 1.000000 9514.000000 H7-hESC Input diffProtA 14 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 357 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC Input diffProtA 14 d Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3H7HESC treatment=DIFFA14D rep=rep1\ track wgEncodeUwHistoneH7esInputStdDiffa14dRawRep1\ type bigWig 1.000000 9514.000000\ wgEncodeAwgTfbsSydhHelas3Ap2gammaUniPk HeLa-S3 TFAP2C narrowPeak HeLa-S3 TFBS Uniform Peaks of AP-2gamma from ENCODE/USC/Analysis 1 357 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of AP-2gamma from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 TFAP2C\ subGroups tier=a20 cellType=a20HELAS3 factor=TFAP2C lab=USC\ track wgEncodeAwgTfbsSydhHelas3Ap2gammaUniPk\ encTfChipPkENCFF693JHE HepG2 CREM narrowPeak Transcription Factor ChIP-seq Peaks of CREM in HepG2 from ENCODE 3 (ENCFF693JHE) 1 357 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of CREM in HepG2 from ENCODE 3 (ENCFF693JHE)\ parent encTfChipPk off\ shortLabel HepG2 CREM\ subGroups cellType=HepG2 factor=CREM\ track encTfChipPkENCFF693JHE\ wgEncodeBroadHistoneHmecCtcfStdSig HMEC CTCF bigWig 0.040000 12888.919922 HMEC CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 357 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HMEC CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HMEC CTCF\ subGroups view=Signal factor=CTCF cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecCtcfStdSig\ type bigWig 0.040000 12888.919922\ wgEncodeRikenCageHmscucCellPapPlusRawRep2 hMUC cell pA+ + 2 bigWig 1.000000 795795.000000 hMSC-UC whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 357 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-UC whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel hMUC cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3HMSCUC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHmscucCellPapPlusRawRep2\ type bigWig 1.000000 795795.000000\ wgEncodeUwDnaseHmvecdlyneoRawRep1 HMVECdLyNeo Sg 1 bigWig 1.000000 20935.000000 HMVEC-dLy-Neo DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 357 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dLy-Neo DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMVECdLyNeo Sg 1\ subGroups view=zRSig cellType=t3HMVECDLYNEO rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdlyneoRawRep1\ type bigWig 1.000000 20935.000000\ wgEncodeCshlShortRnaSeqHpcplCellTapMinusRep2 HPCP cell TAP - 2 bigWig 1.000000 17179356.000000 HPC-PL TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 357 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPC-PL TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HPCP cell TAP - 2\ subGroups view=MinusSignal cellType=t3HPCPL localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHpcplCellTapMinusRep2\ type bigWig 1.000000 17179356.000000\ wgEncodeCshlLongRnaSeqImr90CellTotalJunctions IMR90 cel tot J bed 6 + IMR90 whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 357 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel IMR90 cel tot J\ subGroups view=Junctions cellType=t2IMR90 localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqImr90CellTotalJunctions\ type bed 6 +\ wgEncodeHaibTfbsK562Creb1sc240V0422111PkRep2 K562 CREB1 V11 2 broadPeak K562 CREB1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 357 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CREB1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 CREB1 V11 2\ subGroups view=Peaks factor=CREB1SC240 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Creb1sc240V0422111PkRep2\ type broadPeak\ wgEncodeSydhTfbsK562InputIfng30StdSig K562 IFg3 Inpt Sd bigWig 0.000000 12574.500000 K562 Input Standard IFNg 30min ChIP-seq Signal from ENCODE/SYDH 2 357 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Input Standard IFNg 30min ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFg3 Inpt Sd\ subGroups view=Signal factor=ZZZINPUTSTD cellType=t1K562 control=STD treatment=IFNg30\ track wgEncodeSydhTfbsK562InputIfng30StdSig\ type bigWig 0.000000 12574.500000\ wgEncodeUwTfbsSknshraInputStdRawRep1 SKRA In Sg 1 bigWig 1.000000 12154.000000 SK-N-SH_RA Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 357 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH_RA Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel SKRA In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3SKNSHRA rep=rep1 treatment=aNone\ track wgEncodeUwTfbsSknshraInputStdRawRep1\ type bigWig 1.000000 12154.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_ctss_fwd Tc:ARPE-19Emt_08hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_forward 0 357 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep2.CNhs14527.13671-147D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13671-147D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_08hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_tpm_fwd Tc:ARPE-19Emt_08hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_forward 1 357 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep2.CNhs14527.13671-147D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13671-147D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneH7esInputStdRawRep1 H7ES In Sg 1 bigWig 1.000000 9907.000000 H7-hESC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 358 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H7-hESC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel H7ES In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3H7HESC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneH7esInputStdRawRep1\ type bigWig 1.000000 9907.000000\ wgEncodeAwgTfbsSydhHelas3Usf2IggmusUniPk HeLa-S3 USF2 narrowPeak HeLa-S3 TFBS Uniform Peaks of USF2 from ENCODE/Stanford/Analysis 1 358 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of USF2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 USF2\ subGroups tier=a20 cellType=a20HELAS3 factor=USF2 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Usf2IggmusUniPk\ encTfChipPkENCFF237OKO HepG2 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HepG2 from ENCODE 3 (ENCFF237OKO) 1 358 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in HepG2 from ENCODE 3 (ENCFF237OKO)\ parent encTfChipPk off\ shortLabel HepG2 CTCF\ subGroups cellType=HepG2 factor=CTCF\ track encTfChipPkENCFF237OKO\ wgEncodeBroadHistoneHmecEzh239875Pk HMEC EZH2 broadPeak HMEC EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 358 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMEC EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HMEC EZH2\ subGroups view=Peaks factor=EZH239875 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecEzh239875Pk\ type broadPeak\ wgEncodeRikenCageHmscucCellPapMinusRawRep1 hMUC cell pA+ - 1 bigWig 1.000000 482416.000000 hMSC-UC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 358 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-UC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel hMUC cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3HMSCUC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHmscucCellPapMinusRawRep1\ type bigWig 1.000000 482416.000000\ wgEncodeUwDnaseHmvecdlyneoHotspotsRep2 HMVECdLyNeo Ht 2 broadPeak HMVEC-dLy-Neo DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 358 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dLy-Neo DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMVECdLyNeo Ht 2\ subGroups view=Hot cellType=t3HMVECDLYNEO rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdlyneoHotspotsRep2\ type broadPeak\ wgEncodeCshlShortRnaSeqHpcplCellTapPlusRep1 HPCP cell TAP + 1 bigWig 1.000000 7592293.000000 HPC-PL TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 358 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPC-PL TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HPCP cell TAP + 1\ subGroups view=PlusSignal cellType=t3HPCPL localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHpcplCellTapPlusRep1\ type bigWig 1.000000 7592293.000000\ wgEncodeCshlLongRnaSeqImr90CellTotalMinusRep1 IMR90 cel tot - 1 bigWig 1.000000 1657789.000000 IMR90 whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 358 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel IMR90 cel tot - 1\ subGroups view=MinusSignal cellType=t2IMR90 localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqImr90CellTotalMinusRep1\ type bigWig 1.000000 1657789.000000\ wgEncodeHaibTfbsK562Creb1sc240V0422111RawRep2 K562 CREB1 V11 2 bigWig 1.000000 11554.000000 K562 CREB1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 358 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CREB1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 CREB1 V11 2\ subGroups view=RawSignal factor=CREB1SC240 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Creb1sc240V0422111RawRep2\ type bigWig 1.000000 11554.000000\ wgEncodeSydhTfbsK562InputIfng6hStdSig K562 IFg6 Inpt Sd bigWig 0.000000 15179.000000 K562 Input Standard IFNg 6hrs ChIP-seq Signal from ENCODE/SYDH 2 358 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Input Standard IFNg 6hrs ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 IFg6 Inpt Sd\ subGroups view=Signal factor=ZZZINPUTSTD cellType=t1K562 control=STD treatment=IFNg6h\ track wgEncodeSydhTfbsK562InputIfng6hStdSig\ type bigWig 0.000000 15179.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_ctss_rev Tc:ARPE-19Emt_08hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_reverse 0 358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep2.CNhs14527.13671-147D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13671-147D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_08hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_tpm_rev Tc:ARPE-19Emt_08hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_reverse 1 358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep2.CNhs14527.13671-147D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13671-147D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsWerirb1CtcfStdHotspotsRep1 WERI CTCF Ht 1 broadPeak WERI-Rb-1 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 358 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WERI-Rb-1 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel WERI CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3WERIRB1 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsWerirb1CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeUwHistoneHacH3k04me3StdHotspotsRep1 HAc H3K4M3 Ht 1 broadPeak HAc H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 359 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAc H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HAc H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HAC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHacH3k04me3StdHotspotsRep1\ type broadPeak\ wgEncodeAwgTfbsSydhHelas3Zkscan1hpa006672IggrabUniPk HeLa-S3 ZKSCAN1 narrowPeak HeLa-S3 TFBS Uniform Peaks of ZKSCAN1_(HPA006672) from ENCODE/Stanford/Analysis 1 359 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of ZKSCAN1_(HPA006672) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 ZKSCAN1\ subGroups tier=a20 cellType=a20HELAS3 factor=ZKSCAN1 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Zkscan1hpa006672IggrabUniPk\ encTfChipPkENCFF609YST HepG2 EHMT2 narrowPeak Transcription Factor ChIP-seq Peaks of EHMT2 in HepG2 from ENCODE 3 (ENCFF609YST) 1 359 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of EHMT2 in HepG2 from ENCODE 3 (ENCFF609YST)\ parent encTfChipPk off\ shortLabel HepG2 EHMT2\ subGroups cellType=HepG2 factor=EHMT2\ track encTfChipPkENCFF609YST\ wgEncodeBroadHistoneHmecEzh239875Sig HMEC EZH2 bigWig 0.040000 39375.640625 HMEC EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 359 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HMEC EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HMEC EZH2\ subGroups view=Signal factor=EZH239875 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecEzh239875Sig\ type bigWig 0.040000 39375.640625\ wgEncodeRikenCageHmscucCellPapMinusRawRep2 hMUC cell pA+ - 2 bigWig 1.000000 546333.000000 hMSC-UC whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 359 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-UC whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel hMUC cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3HMSCUC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHmscucCellPapMinusRawRep2\ type bigWig 1.000000 546333.000000\ wgEncodeUwDnaseHmvecdlyneoPkRep2 HMVECdLyNeo Pk 2 narrowPeak HMVEC-dLy-Neo DNaseI HS Peaks Rep 2 from ENCODE/UW 1 359 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dLy-Neo DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMVECdLyNeo Pk 2\ subGroups view=Peaks cellType=t3HMVECDLYNEO rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdlyneoPkRep2\ type narrowPeak\ wgEncodeCshlShortRnaSeqHpcplCellTapPlusRep2 HPCP cell TAP + 2 bigWig 1.000000 9258468.000000 HPC-PL TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 359 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPC-PL TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HPCP cell TAP + 2\ subGroups view=PlusSignal cellType=t3HPCPL localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHpcplCellTapPlusRep2\ type bigWig 1.000000 9258468.000000\ wgEncodeCshlLongRnaSeqImr90CellTotalMinusRep2 IMR90 cel tot - 2 bigWig 1.000000 2961529.000000 IMR90 whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 359 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel IMR90 cel tot - 2\ subGroups view=MinusSignal cellType=t2IMR90 localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqImr90CellTotalMinusRep2\ type bigWig 1.000000 2961529.000000\ wgEncodeHaibTfbsK562Ctcflsc98982V0416101PkRep1 K562 CTCFL V101 1 broadPeak K562 CTCFL v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 359 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CTCFL v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 CTCFL V101 1\ subGroups view=Peaks factor=CTCFLSC98982 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Ctcflsc98982V0416101PkRep1\ type broadPeak\ wgEncodeSydhTfbsK562InputStdSig K562 Inpt Std bigWig 0.000000 10295.500000 K562 Input Standard ChIP-seq Signal from ENCODE/SYDH 2 359 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Input Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 Inpt Std\ subGroups view=Signal factor=ZZZINPUTSTD cellType=t1K562 control=STD treatment=aNONE\ track wgEncodeSydhTfbsK562InputStdSig\ type bigWig 0.000000 10295.500000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_ctss_fwd Tc:ARPE-19Emt_08hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_forward 0 359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep3.CNhs14528.13672-147D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13672-147D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_08hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_tpm_fwd Tc:ARPE-19Emt_08hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_forward 1 359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep3.CNhs14528.13672-147D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13672-147D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsWerirb1CtcfStdPkRep1 WERI CTCF Pk 1 narrowPeak WERI-Rb-1 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 359 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WERI-Rb-1 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel WERI CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3WERIRB1 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsWerirb1CtcfStdPkRep1\ type narrowPeak\ wgEncodeUwHistoneHacH3k04me3StdPkRep1 HAc H3K4M3 Pk 1 narrowPeak HAc H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 360 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAc H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HAc H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HAC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHacH3k04me3StdPkRep1\ type narrowPeak\ wgEncodeAwgTfbsSydhHelas3Znf143IggrabUniPk HeLa-S3 ZNF143 narrowPeak HeLa-S3 TFBS Uniform Peaks of Znf143_(16618-1-AP) from ENCODE/Stanford/Analysis 1 360 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of Znf143_(16618-1-AP) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 ZNF143\ subGroups tier=a20 cellType=a20HELAS3 factor=ZNF143 lab=Stanford\ track wgEncodeAwgTfbsSydhHelas3Znf143IggrabUniPk\ encTfChipPkENCFF747CHL HepG2 ELF1 narrowPeak Transcription Factor ChIP-seq Peaks of ELF1 in HepG2 from ENCODE 3 (ENCFF747CHL) 1 360 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ELF1 in HepG2 from ENCODE 3 (ENCFF747CHL)\ parent encTfChipPk off\ shortLabel HepG2 ELF1\ subGroups cellType=HepG2 factor=ELF1\ track encTfChipPkENCFF747CHL\ wgEncodeBroadHistoneHmecH2azPk HMEC H2A.Z broadPeak HMEC H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 360 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMEC H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HMEC H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH2azPk\ type broadPeak\ wgEncodeRikenCageHmscucCellPapAlnRep1 hMUC cell pA+ A 1 bam hMSC-UC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 360 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-UC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel hMUC cell pA+ A 1\ subGroups view=Alignments cellType=t3HMSCUC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHmscucCellPapAlnRep1\ type bam\ wgEncodeUwDnaseHmvecdlyneoRawRep2 HMVECdLyNeo Sg 2 bigWig 1.000000 39204.000000 HMVEC-dLy-Neo DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 360 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dLy-Neo DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMVECdLyNeo Sg 2\ subGroups view=zRSig cellType=t3HMVECDLYNEO rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdlyneoRawRep2\ type bigWig 1.000000 39204.000000\ wgEncodeCshlShortRnaSeqHpiepcCellTapContigs HPIE cell TAP C bed 6 HPIEpC TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 360 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPIEpC TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HPIE cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t3HPIEPC localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqHpiepcCellTapContigs\ type bed 6\ wgEncodeCshlLongRnaSeqImr90CellTotalPlusRep1 IMR90 cel tot + 1 bigWig 1.000000 5416102.000000 IMR90 whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 360 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel IMR90 cel tot + 1\ subGroups view=PlusSignal cellType=t2IMR90 localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqImr90CellTotalPlusRep1\ type bigWig 1.000000 5416102.000000\ wgEncodeHaibTfbsK562Ctcflsc98982V0416101RawRep1 K562 CTCFL V101 1 bigWig 0.281933 237.457993 K562 CTCFL v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 360 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CTCFL v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 CTCFL V101 1\ subGroups view=RawSignal factor=CTCFLSC98982 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Ctcflsc98982V0416101RawRep1\ type bigWig 0.281933 237.457993\ wgEncodeSydhTfbsK562InputUcdSig K562 Inpt UCD bigWig 0.000000 12876.099609 K562 Input UC Davis ChIP-seq Signal from ENCODE/SYDH 2 360 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Input UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel K562 Inpt UCD\ subGroups view=Signal factor=ZZZINPUTUCD cellType=t1K562 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsK562InputUcdSig\ type bigWig 0.000000 12876.099609\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_ctss_rev Tc:ARPE-19Emt_08hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_reverse 0 360 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep3.CNhs14528.13672-147D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13672-147D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_08hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_tpm_rev Tc:ARPE-19Emt_08hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_reverse 1 360 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep3.CNhs14528.13672-147D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13672-147D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsWerirb1CtcfStdRawRep1 WERI CTCF Sg 1 bigWig 1.000000 2991.000000 WERI-Rb-1 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 360 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WERI-Rb-1 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel WERI CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3WERIRB1 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsWerirb1CtcfStdRawRep1\ type bigWig 1.000000 2991.000000\ wgEncodeSydhTfbsA549Bhlhe40IggrabPk A549 BHL4 IgR narrowPeak A549 BHLHE40 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 361 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 BHLHE40 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel A549 BHL4 IgR\ subGroups view=Peaks factor=BHLHE40 cellType=t2A549 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsA549Bhlhe40IggrabPk\ type narrowPeak\ wgEncodeUwHistoneHacH3k04me3StdRawRep1 HAc H3K4M3 Sg 1 bigWig 1.000000 1453.000000 HAc H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 361 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HAc H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HAc H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HAC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHacH3k04me3StdRawRep1\ type bigWig 1.000000 1453.000000\ wgEncodeAwgTfbsSydhHelas3Znf274UcdUniPk HeLa-S3 ZNF274 narrowPeak HeLa-S3 TFBS Uniform Peaks of ZNF274 from ENCODE/USC/Analysis 1 361 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of ZNF274 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 ZNF274\ subGroups tier=a20 cellType=a20HELAS3 factor=ZNF274 lab=USC\ track wgEncodeAwgTfbsSydhHelas3Znf274UcdUniPk\ encTfChipPkENCFF547POU HepG2 EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in HepG2 from ENCODE 3 (ENCFF547POU) 1 361 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in HepG2 from ENCODE 3 (ENCFF547POU)\ parent encTfChipPk off\ shortLabel HepG2 EP300 1\ subGroups cellType=HepG2 factor=EP300\ track encTfChipPkENCFF547POU\ wgEncodeBroadHistoneHmecH2azSig HMEC H2A.Z bigWig 0.040000 17360.000000 HMEC H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 361 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HMEC H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HMEC H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH2azSig\ type bigWig 0.040000 17360.000000\ wgEncodeRikenCageHmscucCellPapAlnRep2 hMUC cell pA+ A 2 bam hMSC-UC whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 361 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-UC whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel hMUC cell pA+ A 2\ subGroups view=Alignments cellType=t3HMSCUC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHmscucCellPapAlnRep2\ type bam\ wgEncodeUwDnaseHmvecdneoHotspotsRep1 HMVECdNeo Ht 1 broadPeak HMVEC-dNeo DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 361 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dNeo DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMVECdNeo Ht 1\ subGroups view=Hot cellType=t3HMVECDNEO rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdneoHotspotsRep1\ type broadPeak\ wgEncodeCshlShortRnaSeqHpiepcCellTapMinusRep1 HPIE cell TAP - 1 bigWig 1.000000 39373300.000000 HPIEpC TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 361 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPIEpC TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HPIE cell TAP - 1\ subGroups view=MinusSignal cellType=t3HPIEPC localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHpiepcCellTapMinusRep1\ type bigWig 1.000000 39373300.000000\ wgEncodeCshlLongRnaSeqImr90CellTotalPlusRep2 IMR90 cel tot + 2 bigWig 1.000000 4710285.000000 IMR90 whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 361 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel IMR90 cel tot + 2\ subGroups view=PlusSignal cellType=t2IMR90 localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqImr90CellTotalPlusRep2\ type bigWig 1.000000 4710285.000000\ wgEncodeHaibTfbsK562Ctcflsc98982V0416101PkRep2 K562 CTCFL V101 2 broadPeak K562 CTCFL v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 361 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CTCFL v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 CTCFL V101 2\ subGroups view=Peaks factor=CTCFLSC98982 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Ctcflsc98982V0416101PkRep2\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_ctss_fwd Tc:ARPE-19Emt_12hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_forward 0 361 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep2.CNhs14530.13674-147E2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13674-147E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_12hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_tpm_fwd Tc:ARPE-19Emt_12hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_forward 1 361 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep2.CNhs14530.13674-147E2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13674-147E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_12hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsWerirb1CtcfStdHotspotsRep2 WERI CTCF Ht 2 broadPeak WERI-Rb-1 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 361 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WERI-Rb-1 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewHot off\ shortLabel WERI CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3WERIRB1 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsWerirb1CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeSydhTfbsA549Bhlhe40IggrabSig A549 BHL4 IgR bigWig 1.000000 18642.000000 A549 BHLHE40 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 362 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 BHLHE40 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel A549 BHL4 IgR\ subGroups view=Signal factor=BHLHE40 cellType=t2A549 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsA549Bhlhe40IggrabSig\ type bigWig 1.000000 18642.000000\ wgEncodeUwHistoneHacH3k04me3StdHotspotsRep2 HAc H3K4M3 Ht 2 broadPeak HAc H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 362 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAc H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HAc H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HAC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHacH3k04me3StdHotspotsRep2\ type broadPeak\ wgEncodeAwgTfbsSydhHelas3Zzz3UniPk HeLa-S3 ZZZ3 narrowPeak HeLa-S3 TFBS Uniform Peaks of ZZZ3 from ENCODE/Harvard/Analysis 1 362 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFBS Uniform Peaks of ZZZ3 from ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HeLa-S3 ZZZ3\ subGroups tier=a20 cellType=a20HELAS3 factor=ZZZ3 lab=Harvard\ track wgEncodeAwgTfbsSydhHelas3Zzz3UniPk\ encTfChipPkENCFF259JWD HepG2 EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in HepG2 from ENCODE 3 (ENCFF259JWD) 1 362 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in HepG2 from ENCODE 3 (ENCFF259JWD)\ parent encTfChipPk off\ shortLabel HepG2 EP300 2\ subGroups cellType=HepG2 factor=EP300\ track encTfChipPkENCFF259JWD\ wgEncodeBroadHistoneHmecH3k4me1StdPk HMEC H3K4m1 broadPeak HMEC H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 362 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMEC H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HMEC H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k4me1StdPk\ type broadPeak\ wgEncodeUwDnaseHmvecdneoPkRep1 HMVECdNeo Pk 1 narrowPeak HMVEC-dNeo DNaseI HS Peaks Rep 1 from ENCODE/UW 1 362 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dNeo DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMVECdNeo Pk 1\ subGroups view=Peaks cellType=t3HMVECDNEO rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdneoPkRep1\ type narrowPeak\ wgEncodeRikenCageHobCellPapTssHmm HOB cell pA+ bed 6 HOB whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 362 0 0 0 127 127 127 0 0 0 expression 1 longLabel HOB whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HOB cell pA+\ subGroups view=TssHmm cellType=t3HOB localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHobCellPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqHpiepcCellTapMinusRep2 HPIE cell TAP - 2 bigWig 1.000000 28200544.000000 HPIEpC TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 362 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPIEpC TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HPIE cell TAP - 2\ subGroups view=MinusSignal cellType=t3HPIEPC localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHpiepcCellTapMinusRep2\ type bigWig 1.000000 28200544.000000\ wgEncodeCshlLongRnaSeqImr90CytosolPapAlnRep1 IMR90 cyt pA+ A 1 bam IMR90 cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 362 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel IMR90 cyt pA+ A 1\ subGroups view=Alignments cellType=t2IMR90 localization=CYTOSOL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqImr90CytosolPapAlnRep1\ type bam\ wgEncodeHaibTfbsK562Ctcflsc98982V0416101RawRep2 K562 CTCFL V101 2 bigWig 0.240899 187.720993 K562 CTCFL v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 362 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CTCFL v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 CTCFL V101 2\ subGroups view=RawSignal factor=CTCFLSC98982 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Ctcflsc98982V0416101RawRep2\ type bigWig 0.240899 187.720993\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_ctss_rev Tc:ARPE-19Emt_12hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_reverse 0 362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep2.CNhs14530.13674-147E2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13674-147E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_12hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_tpm_rev Tc:ARPE-19Emt_12hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_reverse 1 362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep2.CNhs14530.13674-147E2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13674-147E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_12hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsWerirb1CtcfStdPkRep2 WERI CTCF Pk 2 narrowPeak WERI-Rb-1 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 362 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WERI-Rb-1 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel WERI CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3WERIRB1 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsWerirb1CtcfStdPkRep2\ type narrowPeak\ wgEncodeSydhTfbsA549CebpbIggrabPk A549 CBPB IgR narrowPeak A549 CEBPB IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 363 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 CEBPB IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel A549 CBPB IgR\ subGroups view=Peaks factor=CEBPB cellType=t2A549 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsA549CebpbIggrabPk\ type narrowPeak\ wgEncodeUwHistoneHacH3k04me3StdPkRep2 HAc H3K4M3 Pk 2 narrowPeak HAc H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 363 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAc H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HAc H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HAC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHacH3k04me3StdPkRep2\ type narrowPeak\ wgEncodeAwgTfbsSydhHepg2Arid3anb100279IggrabUniPk HepG2 ARID3A narrowPeak HepG2 TFBS Uniform Peaks of ARID3A_(NB100-279) from ENCODE/Stanford/Analysis 1 363 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of ARID3A_(NB100-279) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 ARID3A\ subGroups tier=a20 cellType=a20HEPG2 factor=ARID3A lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Arid3anb100279IggrabUniPk\ encTfChipPkENCFF244ORA HepG2 ETS1 narrowPeak Transcription Factor ChIP-seq Peaks of ETS1 in HepG2 from ENCODE 3 (ENCFF244ORA) 1 363 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ETS1 in HepG2 from ENCODE 3 (ENCFF244ORA)\ parent encTfChipPk off\ shortLabel HepG2 ETS1\ subGroups cellType=HepG2 factor=ETS1\ track encTfChipPkENCFF244ORA\ wgEncodeBroadHistoneHmecH3k4me1StdSig HMEC H3K4m1 bigWig 0.040000 12081.799805 HMEC H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 363 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HMEC H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HMEC H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k4me1StdSig\ type bigWig 0.040000 12081.799805\ wgEncodeUwDnaseHmvecdneoRawRep1 HMVECdNeo Sg 1 bigWig 1.000000 67486.000000 HMVEC-dNeo DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 363 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dNeo DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMVECdNeo Sg 1\ subGroups view=zRSig cellType=t3HMVECDNEO rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecdneoRawRep1\ type bigWig 1.000000 67486.000000\ wgEncodeRikenCageHobCellPapPlusRawRep1 HOB cell pA+ + 1 bigWig 1.000000 419082.000000 HOB whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 363 0 0 0 127 127 127 0 0 0 expression 0 longLabel HOB whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HOB cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3HOB localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHobCellPapPlusRawRep1\ type bigWig 1.000000 419082.000000\ wgEncodeCshlShortRnaSeqHpiepcCellTapPlusRep1 HPIE cell TAP + 1 bigWig 1.000000 10642166.000000 HPIEpC TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 363 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPIEpC TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HPIE cell TAP + 1\ subGroups view=PlusSignal cellType=t3HPIEPC localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHpiepcCellTapPlusRep1\ type bigWig 1.000000 10642166.000000\ wgEncodeCshlLongRnaSeqImr90CytosolPapAlnRep2 IMR90 cyt pA+ A 2 bam IMR90 cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 363 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel IMR90 cyt pA+ A 2\ subGroups view=Alignments cellType=t2IMR90 localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqImr90CytosolPapAlnRep2\ type bam\ wgEncodeHaibTfbsK562CtcfcPcr1xPkRep1V2 K562 CTCF PCR1 1 broadPeak K562 CTCF 5916 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 363 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CTCF 5916 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 CTCF PCR1 1\ subGroups view=Peaks factor=CTCFSC5916 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562CtcfcPcr1xPkRep1V2\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_ctss_fwd Tc:ARPE-19Emt_12hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_forward 0 363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep3.CNhs14531.13675-147E3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13675-147E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_12hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_tpm_fwd Tc:ARPE-19Emt_12hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_forward 1 363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep3.CNhs14531.13675-147E3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13675-147E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_12hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsWerirb1CtcfStdRawRep2 WERI CTCF Sg 2 bigWig 1.000000 3015.000000 WERI-Rb-1 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 363 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WERI-Rb-1 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel WERI CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3WERIRB1 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsWerirb1CtcfStdRawRep2\ type bigWig 1.000000 3015.000000\ wgEncodeSydhTfbsA549CebpbIggrabSig A549 CBPB IgR bigWig 1.000000 22596.000000 A549 CEBPB IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 364 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 CEBPB IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel A549 CBPB IgR\ subGroups view=Signal factor=CEBPB cellType=t2A549 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsA549CebpbIggrabSig\ type bigWig 1.000000 22596.000000\ wgEncodeUwHistoneHacH3k04me3StdRawRep2 HAc H3K4M3 Sg 2 bigWig 1.000000 2087.000000 HAc H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 364 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HAc H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HAc H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HAC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHacH3k04me3StdRawRep2\ type bigWig 1.000000 2087.000000\ wgEncodeAwgTfbsHaibHepg2Atf3V0416101UniPk HepG2 ATF3 narrowPeak HepG2 TFBS Uniform Peaks of ATF3 from ENCODE/HudsonAlpha/Analysis 1 364 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of ATF3 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 ATF3\ subGroups tier=a20 cellType=a20HEPG2 factor=ATF3 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Atf3V0416101UniPk\ encTfChipPkENCFF076NCP HepG2 ETV4 narrowPeak Transcription Factor ChIP-seq Peaks of ETV4 in HepG2 from ENCODE 3 (ENCFF076NCP) 1 364 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ETV4 in HepG2 from ENCODE 3 (ENCFF076NCP)\ parent encTfChipPk off\ shortLabel HepG2 ETV4\ subGroups cellType=HepG2 factor=ETV4\ track encTfChipPkENCFF076NCP\ wgEncodeBroadHistoneHmecH3k4me2StdPk HMEC H3K4m2 broadPeak HMEC H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 364 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMEC H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HMEC H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k4me2StdPk\ type broadPeak\ wgEncodeUwDnaseHmvecdneoHotspotsRep2 HMVECdNeo Ht 2 broadPeak HMVEC-dNeo DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 364 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dNeo DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMVECdNeo Ht 2\ subGroups view=Hot cellType=t3HMVECDNEO rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdneoHotspotsRep2\ type broadPeak\ wgEncodeRikenCageHobCellPapPlusRawRep2 HOB cell pA+ + 2 bigWig 1.000000 480804.000000 HOB whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 364 0 0 0 127 127 127 0 0 0 expression 0 longLabel HOB whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HOB cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3HOB localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHobCellPapPlusRawRep2\ type bigWig 1.000000 480804.000000\ wgEncodeCshlShortRnaSeqHpiepcCellTapPlusRep2 HPIE cell TAP + 2 bigWig 1.000000 9086925.000000 HPIEpC TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 364 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPIEpC TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HPIE cell TAP + 2\ subGroups view=PlusSignal cellType=t3HPIEPC localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHpiepcCellTapPlusRep2\ type bigWig 1.000000 9086925.000000\ wgEncodeCshlLongRnaSeqImr90CytosolPapContigs IMR90 cyt pA+ C bed 6 + IMR90 cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 364 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel IMR90 cyt pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2IMR90 localization=CYTOSOL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqImr90CytosolPapContigs\ type bed 6 +\ wgEncodeHaibTfbsK562CtcfcPcr1xRawRep1V2 K562 CTCF PCR1 1 bigWig 1.000000 7449.000000 K562 CTCF 5916 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 364 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CTCF 5916 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 CTCF PCR1 1\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562CtcfcPcr1xRawRep1V2\ type bigWig 1.000000 7449.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_ctss_rev Tc:ARPE-19Emt_12hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_reverse 0 364 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep3.CNhs14531.13675-147E3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13675-147E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_12hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_tpm_rev Tc:ARPE-19Emt_12hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_reverse 1 364 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep3.CNhs14531.13675-147E3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13675-147E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_12hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsWerirb1InputStdRawRep1 WERI In Sg 1 bigWig 1.000000 9496.000000 WERI-Rb-1 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 364 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WERI-Rb-1 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel WERI In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3WERIRB1 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsWerirb1InputStdRawRep1\ type bigWig 1.000000 9496.000000\ wgEncodeSydhTfbsA549CmycIggrabPk A549 c-Myc IgR narrowPeak A549 c-Myc IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 365 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 c-Myc IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel A549 c-Myc IgR\ subGroups view=Peaks factor=CMYC cellType=t2A549 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsA549CmycIggrabPk\ type narrowPeak\ wgEncodeUwHistoneHacInputStdRawRep1 HAc In Sg 1 bigWig 1.000000 18298.000000 HAc Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 365 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HAc Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HAc In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HAC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHacInputStdRawRep1\ type bigWig 1.000000 18298.000000\ wgEncodeAwgTfbsHaibHepg2Bhlhe40V0416101UniPk HepG2 BHLHE40 h narrowPeak HepG2 TFBS Uniform Peaks of BHLHE40 from ENCODE/HudsonAlpha/Analysis 1 365 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of BHLHE40 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 BHLHE40 h\ subGroups tier=a20 cellType=a20HEPG2 factor=BHLHE40 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Bhlhe40V0416101UniPk\ encTfChipPkENCFF493FED HepG2 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in HepG2 from ENCODE 3 (ENCFF493FED) 1 365 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of EZH2 in HepG2 from ENCODE 3 (ENCFF493FED)\ parent encTfChipPk off\ shortLabel HepG2 EZH2\ subGroups cellType=HepG2 factor=EZH2\ track encTfChipPkENCFF493FED\ wgEncodeBroadHistoneHmecH3k4me2StdSig HMEC H3K4m2 bigWig 0.040000 9754.000000 HMEC H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 365 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HMEC H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HMEC H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k4me2StdSig\ type bigWig 0.040000 9754.000000\ wgEncodeUwDnaseHmvecdneoPkRep2 HMVECdNeo Pk 2 narrowPeak HMVEC-dNeo DNaseI HS Peaks Rep 2 from ENCODE/UW 1 365 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-dNeo DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMVECdNeo Pk 2\ subGroups view=Peaks cellType=t3HMVECDNEO rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdneoPkRep2\ type narrowPeak\ wgEncodeRikenCageHobCellPapMinusRawRep1 HOB cell pA+ - 1 bigWig 1.000000 416262.000000 HOB whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 365 0 0 0 127 127 127 0 0 0 expression 0 longLabel HOB whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HOB cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3HOB localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHobCellPapMinusRawRep1\ type bigWig 1.000000 416262.000000\ wgEncodeCshlShortRnaSeqHsavecCellTapContigs HSaV cell TAP C bed 6 HSaVEC TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 365 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSaVEC TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HSaV cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t3HSAVEC localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqHsavecCellTapContigs\ type bed 6\ wgEncodeCshlLongRnaSeqImr90CytosolPapJunctions IMR90 cyt pA+ J bed 6 + IMR90 cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 365 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel IMR90 cyt pA+ J\ subGroups view=Junctions cellType=t2IMR90 localization=CYTOSOL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqImr90CytosolPapJunctions\ type bed 6 +\ wgEncodeHaibTfbsK562CtcfcPcr1xPkRep2 K562 CTCF PCR1 2 broadPeak K562 CTCF 5916 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 365 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 CTCF 5916 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 CTCF PCR1 2\ subGroups view=Peaks factor=CTCFSC5916 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562CtcfcPcr1xPkRep2\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_ctss_fwd Tc:ARPE-19Emt_16hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_forward 0 365 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep1.CNhs14532.13676-147E4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13676-147E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_tpm_fwd Tc:ARPE-19Emt_16hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_forward 1 365 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep1.CNhs14532.13676-147E4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13676-147E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsWi38CtcfStdHotspotsRep1 WI-38 CTCF Ht 1 broadPeak WI-38 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW 2 365 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 CTCF TFBS ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel WI-38 CTCF Ht 1\ subGroups view=Hot factor=CTCF cellType=t3WI38 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsWi38CtcfStdHotspotsRep1\ type broadPeak\ wgEncodeSydhTfbsA549CmycIggrabSig A549 c-Myc IgR bigWig 1.000000 444.000000 A549 c-Myc IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 366 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 c-Myc IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel A549 c-Myc IgR\ subGroups view=Signal factor=CMYC cellType=t2A549 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsA549CmycIggrabSig\ type bigWig 1.000000 444.000000\ wgEncodeUwHistoneHaspH3k4me3StdHotspotsRep1 HAsp H3K4M3 Ht 1 broadPeak HA-sp H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 366 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-sp H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HAsp H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HASP rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHaspH3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeAwgTfbsSydhHepg2Bhlhe40cIggrabUniPk HepG2 BHLHE40 s narrowPeak HepG2 TFBS Uniform Peaks of BHLHE40_(NB100-1800) from ENCODE/Stanford/Analysis 1 366 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of BHLHE40_(NB100-1800) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 BHLHE40 s\ subGroups tier=a20 cellType=a20HEPG2 factor=BHLHE40 lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Bhlhe40cIggrabUniPk\ encTfChipPkENCFF093OUB HepG2 FIP1L1 narrowPeak Transcription Factor ChIP-seq Peaks of FIP1L1 in HepG2 from ENCODE 3 (ENCFF093OUB) 1 366 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of FIP1L1 in HepG2 from ENCODE 3 (ENCFF093OUB)\ parent encTfChipPk off\ shortLabel HepG2 FIP1L1\ subGroups cellType=HepG2 factor=FIP1L1\ track encTfChipPkENCFF093OUB\ wgEncodeBroadHistoneHmecH3k4me3StdPk HMEC H3K4m3 broadPeak HMEC H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 366 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMEC H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HMEC H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k4me3StdPk\ type broadPeak\ wgEncodeUwDnaseHmvecdneoRawRep2 HMVECdNeo Sg 2 bigWig 1.000000 18755.000000 HMVEC-dNeo DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 366 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-dNeo DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMVECdNeo Sg 2\ subGroups view=zRSig cellType=t3HMVECDNEO rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecdneoRawRep2\ type bigWig 1.000000 18755.000000\ wgEncodeRikenCageHobCellPapMinusRawRep2 HOB cell pA+ - 2 bigWig 1.000000 365921.000000 HOB whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 366 0 0 0 127 127 127 0 0 0 expression 0 longLabel HOB whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HOB cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3HOB localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHobCellPapMinusRawRep2\ type bigWig 1.000000 365921.000000\ wgEncodeCshlShortRnaSeqHsavecCellTapMinusRep1 HSaV cell TAP - 1 bigWig 1.000000 56622540.000000 HSaVEC TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 366 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSaVEC TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HSaV cell TAP - 1\ subGroups view=MinusSignal cellType=t3HSAVEC localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHsavecCellTapMinusRep1\ type bigWig 1.000000 56622540.000000\ wgEncodeCshlLongRnaSeqImr90CytosolPapMinusRep1 IMR90 cyt pA+ - 1 bigWig 1.000000 708440.000000 IMR90 cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 366 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel IMR90 cyt pA+ - 1\ subGroups view=MinusSignal cellType=t2IMR90 localization=CYTOSOL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqImr90CytosolPapMinusRep1\ type bigWig 1.000000 708440.000000\ wgEncodeHaibTfbsK562CtcfcPcr1xRawRep2 K562 CTCF PCR1 2 bigWig 0.145314 207.871994 K562 CTCF 5916 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 366 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 CTCF 5916 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 CTCF PCR1 2\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562CtcfcPcr1xRawRep2\ type bigWig 0.145314 207.871994\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_ctss_rev Tc:ARPE-19Emt_16hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_reverse 0 366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep1.CNhs14532.13676-147E4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13676-147E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_tpm_rev Tc:ARPE-19Emt_16hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_reverse 1 366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep1.CNhs14532.13676-147E4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13676-147E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsWi38CtcfStdPkRep1 WI-38 CTCF Pk 1 narrowPeak WI-38 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW 3 366 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 CTCF TFBS ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel WI-38 CTCF Pk 1\ subGroups view=Peaks factor=CTCF cellType=t3WI38 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsWi38CtcfStdPkRep1\ type narrowPeak\ wgEncodeSydhTfbsA549CtcfbIggrabPk A549 CTCF IgR narrowPeak A549 CTCF (SC-15914) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 367 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 CTCF (SC-15914) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel A549 CTCF IgR\ subGroups view=Peaks factor=CTCFb cellType=t2A549 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsA549CtcfbIggrabPk\ type narrowPeak\ wgEncodeUwHistoneHaspH3k4me3StdPkRep1 HAsp H3K4M3 Pk 1 narrowPeak HA-sp H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 367 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-sp H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HAsp H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HASP rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHaspH3k4me3StdPkRep1\ type narrowPeak\ wgEncodeAwgTfbsSydhHepg2Brca1a300IggrabUniPk HepG2 BRCA1 narrowPeak HepG2 TFBS Uniform Peaks of BRCA1_(A300-000A) from ENCODE/Stanford/Analysis 1 367 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of BRCA1_(A300-000A) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 BRCA1\ subGroups tier=a20 cellType=a20HEPG2 factor=BRCA1 lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Brca1a300IggrabUniPk\ encTfChipPkENCFF395KPJ HepG2 FOSL2 narrowPeak Transcription Factor ChIP-seq Peaks of FOSL2 in HepG2 from ENCODE 3 (ENCFF395KPJ) 1 367 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of FOSL2 in HepG2 from ENCODE 3 (ENCFF395KPJ)\ parent encTfChipPk off\ shortLabel HepG2 FOSL2\ subGroups cellType=HepG2 factor=FOSL2\ track encTfChipPkENCFF395KPJ\ wgEncodeBroadHistoneHmecH3k4me3StdSig HMEC H3K4m3 bigWig 0.040000 14119.879883 HMEC H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 367 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HMEC H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HMEC H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k4me3StdSig\ type bigWig 0.040000 14119.879883\ wgEncodeUwDnaseHmveclblHotspotsRep1 HMVECLBl Ht 1 broadPeak HMVEC-LBl DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 367 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-LBl DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMVECLBl Ht 1\ subGroups view=Hot cellType=t3HMVECLBL rep=rep1 treatment=None\ track wgEncodeUwDnaseHmveclblHotspotsRep1\ type broadPeak\ wgEncodeRikenCageHobCellPapAlnRep1 HOB cell pA+ A 1 bam HOB whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 367 0 0 0 127 127 127 0 0 0 expression 1 longLabel HOB whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HOB cell pA+ A 1\ subGroups view=Alignments cellType=t3HOB localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHobCellPapAlnRep1\ type bam\ wgEncodeCshlShortRnaSeqHsavecCellTapMinusRep2 HSaV cell TAP - 2 bigWig 1.000000 42906208.000000 HSaVEC TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 367 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSaVEC TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HSaV cell TAP - 2\ subGroups view=MinusSignal cellType=t3HSAVEC localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHsavecCellTapMinusRep2\ type bigWig 1.000000 42906208.000000\ wgEncodeCshlLongRnaSeqImr90CytosolPapMinusRep2 IMR90 cyt pA+ - 2 bigWig 1.000000 922437.000000 IMR90 cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 367 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel IMR90 cyt pA+ - 2\ subGroups view=MinusSignal cellType=t2IMR90 localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqImr90CytosolPapMinusRep2\ type bigWig 1.000000 922437.000000\ wgEncodeHaibTfbsK562E2f6V0416102PkRep1 K562 E2F6 V102 1 broadPeak K562 E2F6 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 367 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 E2F6 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 E2F6 V102 1\ subGroups view=Peaks factor=E2F6 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562E2f6V0416102PkRep1\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_ctss_fwd Tc:ARPE-19Emt_16hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_forward 0 367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep2.CNhs14533.13677-147E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13677-147E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_tpm_fwd Tc:ARPE-19Emt_16hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_forward 1 367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep2.CNhs14533.13677-147E5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13677-147E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsWi38CtcfStdRawRep1 WI-38 CTCF Sg 1 bigWig 1.000000 9025.000000 WI-38 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 367 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WI-38 CTCF TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel WI-38 CTCF Sg 1\ subGroups view=zRSig factor=CTCF cellType=t3WI38 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsWi38CtcfStdRawRep1\ type bigWig 1.000000 9025.000000\ wgEncodeSydhTfbsA549CtcfbIggrabSig A549 CTCF IgR bigWig 1.000000 480.000000 A549 CTCF (SC-15914) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 368 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 CTCF (SC-15914) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel A549 CTCF IgR\ subGroups view=Signal factor=CTCFb cellType=t2A549 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsA549CtcfbIggrabSig\ type bigWig 1.000000 480.000000\ wgEncodeUwHistoneHaspH3k4me3StdRawRep1 HAsp H3K4M3 Sg 1 bigWig 1.000000 5096.000000 HA-sp H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 368 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HA-sp H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HAsp H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HASP rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHaspH3k4me3StdRawRep1\ type bigWig 1.000000 5096.000000\ wgEncodeAwgTfbsHaibHepg2Cebpbsc150V0416101UniPk HepG2 CEBPB h narrowPeak HepG2 TFBS Uniform Peaks of CEBPB_(SC-150) from ENCODE/HudsonAlpha/Analysis 1 368 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of CEBPB_(SC-150) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 CEBPB h\ subGroups tier=a20 cellType=a20HEPG2 factor=CEBPB lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Cebpbsc150V0416101UniPk\ encTfChipPkENCFF553PWA HepG2 FOXA1 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF553PWA) 1 368 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF553PWA)\ parent encTfChipPk off\ shortLabel HepG2 FOXA1 1\ subGroups cellType=HepG2 factor=FOXA1\ track encTfChipPkENCFF553PWA\ wgEncodeBroadHistoneHmecH3k9acStdPk HMEC H3K9ac broadPeak HMEC H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 368 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMEC H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HMEC H3K9ac\ subGroups view=Peaks factor=H3K09AC cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k9acStdPk\ type broadPeak\ wgEncodeUwDnaseHmveclblPkRep1 HMVECLBl Pk 1 narrowPeak HMVEC-LBl DNaseI HS Peaks Rep 1 from ENCODE/UW 1 368 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-LBl DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMVECLBl Pk 1\ subGroups view=Peaks cellType=t3HMVECLBL rep=rep1 treatment=None\ track wgEncodeUwDnaseHmveclblPkRep1\ type narrowPeak\ wgEncodeRikenCageHobCellPapAlnRep2 HOB cell pA+ A 2 bam HOB whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 368 0 0 0 127 127 127 0 0 0 expression 1 longLabel HOB whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HOB cell pA+ A 2\ subGroups view=Alignments cellType=t3HOB localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHobCellPapAlnRep2\ type bam\ wgEncodeCshlShortRnaSeqHsavecCellTapPlusRep1 HSaV cell TAP + 1 bigWig 1.000000 7078113.000000 HSaVEC TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 368 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSaVEC TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HSaV cell TAP + 1\ subGroups view=PlusSignal cellType=t3HSAVEC localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHsavecCellTapPlusRep1\ type bigWig 1.000000 7078113.000000\ wgEncodeCshlLongRnaSeqImr90CytosolPapPlusRep1 IMR90 cyt pA+ + 1 bigWig 1.000000 1124582.000000 IMR90 cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 368 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel IMR90 cyt pA+ + 1\ subGroups view=PlusSignal cellType=t2IMR90 localization=CYTOSOL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqImr90CytosolPapPlusRep1\ type bigWig 1.000000 1124582.000000\ wgEncodeHaibTfbsK562E2f6V0416102RawRep1 K562 E2F6 V102 1 bigWig 0.297230 676.867004 K562 E2F6 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 368 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 E2F6 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 E2F6 V102 1\ subGroups view=RawSignal factor=E2F6 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562E2f6V0416102RawRep1\ type bigWig 0.297230 676.867004\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_ctss_rev Tc:ARPE-19Emt_16hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_reverse 0 368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep2.CNhs14533.13677-147E5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13677-147E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_tpm_rev Tc:ARPE-19Emt_16hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_reverse 1 368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep2.CNhs14533.13677-147E5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13677-147E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsWi38CtcfStdHotspotsRep2 WI-38 CTCF Ht 2 broadPeak WI-38 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW 2 368 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 CTCF TFBS ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewHot off\ shortLabel WI-38 CTCF Ht 2\ subGroups view=Hot factor=CTCF cellType=t3WI38 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsWi38CtcfStdHotspotsRep2\ type broadPeak\ wgEncodeSydhTfbsA549MaxIggrabPk A549 Max IgR narrowPeak A549 Max IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 369 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 Max IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel A549 Max IgR\ subGroups view=Peaks factor=MAX cellType=t2A549 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsA549MaxIggrabPk\ type narrowPeak\ wgEncodeUwHistoneHaspH3k4me3StdHotspotsRep2 HAsp H3K4M3 Ht 2 broadPeak HA-sp H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 369 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-sp H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HAsp H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HASP rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHaspH3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeAwgTfbsSydhHepg2CebpbIggrabUniPk HepG2 CEBPB s narrowPeak HepG2 TFBS Uniform Peaks of CEBPB from ENCODE/Stanford/Analysis 1 369 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of CEBPB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 CEBPB s\ subGroups tier=a20 cellType=a20HEPG2 factor=CEBPB lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2CebpbIggrabUniPk\ encTfChipPkENCFF978IWS HepG2 FOXA1 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF978IWS) 1 369 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF978IWS)\ parent encTfChipPk off\ shortLabel HepG2 FOXA1 2\ subGroups cellType=HepG2 factor=FOXA1\ track encTfChipPkENCFF978IWS\ wgEncodeBroadHistoneHmecH3k9acStdSig HMEC H3K9ac bigWig 0.040000 7841.640137 HMEC H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 369 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HMEC H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HMEC H3K9ac\ subGroups view=Signal factor=H3K09AC cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k9acStdSig\ type bigWig 0.040000 7841.640137\ wgEncodeUwDnaseHmveclblRawRep1 HMVECLBl Sg 1 bigWig 1.000000 35010.000000 HMVEC-LBl DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 369 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-LBl DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMVECLBl Sg 1\ subGroups view=zRSig cellType=t3HMVECLBL rep=rep1 treatment=None\ track wgEncodeUwDnaseHmveclblRawRep1\ type bigWig 1.000000 35010.000000\ wgEncodeRikenCageHpcplCellPapTssHmm HPCP cell pA+ bed 6 HPC-PL whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 369 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPC-PL whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HPCP cell pA+\ subGroups view=TssHmm cellType=t3HPCPL localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHpcplCellPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqHsavecCellTapPlusRep2 HSaV cell TAP + 2 bigWig 1.000000 13154209.000000 HSaVEC TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 369 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSaVEC TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HSaV cell TAP + 2\ subGroups view=PlusSignal cellType=t3HSAVEC localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHsavecCellTapPlusRep2\ type bigWig 1.000000 13154209.000000\ wgEncodeCshlLongRnaSeqImr90CytosolPapPlusRep2 IMR90 cyt pA+ + 2 bigWig 1.000000 1581512.000000 IMR90 cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 369 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel IMR90 cyt pA+ + 2\ subGroups view=PlusSignal cellType=t2IMR90 localization=CYTOSOL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqImr90CytosolPapPlusRep2\ type bigWig 1.000000 1581512.000000\ wgEncodeHaibTfbsK562E2f6V0416102PkRep2 K562 E2F6 V102 2 broadPeak K562 E2F6 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 369 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 E2F6 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 E2F6 V102 2\ subGroups view=Peaks factor=E2F6 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562E2f6V0416102PkRep2\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_ctss_fwd Tc:ARPE-19Emt_16hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_forward 0 369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep3.CNhs14534.13678-147E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13678-147E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_tpm_fwd Tc:ARPE-19Emt_16hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_forward 1 369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep3.CNhs14534.13678-147E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13678-147E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsWi38CtcfStdPkRep2 WI-38 CTCF Pk 2 narrowPeak WI-38 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW 3 369 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 CTCF TFBS ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewPeaks off\ shortLabel WI-38 CTCF Pk 2\ subGroups view=Peaks factor=CTCF cellType=t3WI38 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsWi38CtcfStdPkRep2\ type narrowPeak\ wgEncodeSydhTfbsA549MaxIggrabSig A549 Max IgR bigWig 1.000000 20499.000000 A549 Max IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 370 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Max IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel A549 Max IgR\ subGroups view=Signal factor=MAX cellType=t2A549 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsA549MaxIggrabSig\ type bigWig 1.000000 20499.000000\ wgEncodeUwHistoneHaspH3k4me3StdPkRep2 HAsp H3K4M3 Pk 2 narrowPeak HA-sp H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 370 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-sp H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HAsp H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HASP rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHaspH3k4me3StdPkRep2\ type narrowPeak\ encTfChipPkENCFF675TLS HepG2 FOXA1 3 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF675TLS) 1 370 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF675TLS)\ parent encTfChipPk off\ shortLabel HepG2 FOXA1 3\ subGroups cellType=HepG2 factor=FOXA1\ track encTfChipPkENCFF675TLS\ wgEncodeAwgTfbsSydhHepg2CebpbForsklnUniPk HepG2+forsk CEBPB narrowPeak HepG2 (forskolin) TFBS Uniform Peaks of CEBPB from ENCODE/Stanford/Analysis 1 370 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 (forskolin) TFBS Uniform Peaks of CEBPB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2+forsk CEBPB\ subGroups tier=a20 cellType=a20HEPG2 factor=CEBPB lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2CebpbForsklnUniPk\ wgEncodeBroadHistoneHmecH3k09me3Pk HMEC H3K9m3 broadPeak HMEC H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 370 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMEC H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HMEC H3K9m3\ subGroups view=Peaks factor=H3K09ME3 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k09me3Pk\ type broadPeak\ wgEncodeUwDnaseHmveclblHotspotsRep2 HMVECLBl Ht 2 broadPeak HMVEC-LBl DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 370 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-LBl DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMVECLBl Ht 2\ subGroups view=Hot cellType=t3HMVECLBL rep=rep2 treatment=None\ track wgEncodeUwDnaseHmveclblHotspotsRep2\ type broadPeak\ wgEncodeRikenCageHpcplCellPapPlusRawRep1 HPCP cell pA+ + 1 bigWig 1.000000 799831.000000 HPC-PL whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 370 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPC-PL whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HPCP cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3HPCPL localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHpcplCellPapPlusRawRep1\ type bigWig 1.000000 799831.000000\ wgEncodeCshlShortRnaSeqHvmfCellTapContigs HVMF cell TAP C bed 6 HVMF TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 370 0 0 0 127 127 127 0 0 0 expression 1 longLabel HVMF TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HVMF cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t3HVMF localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqHvmfCellTapContigs\ type bed 6\ wgEncodeCshlLongRnaSeqImr90NucleusPapAlnRep1 IMR90 nuc pA+ A 1 bam IMR90 nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 370 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel IMR90 nuc pA+ A 1\ subGroups view=Alignments cellType=t2IMR90 localization=NUCLEUS rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqImr90NucleusPapAlnRep1\ type bam\ wgEncodeHaibTfbsK562E2f6V0416102RawRep2 K562 E2F6 V102 2 bigWig 0.209743 292.433990 K562 E2F6 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 370 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 E2F6 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 E2F6 V102 2\ subGroups view=RawSignal factor=E2F6 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562E2f6V0416102RawRep2\ type bigWig 0.209743 292.433990\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_ctss_rev Tc:ARPE-19Emt_16hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_reverse 0 370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep3.CNhs14534.13678-147E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13678-147E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_tpm_rev Tc:ARPE-19Emt_16hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_reverse 1 370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep3.CNhs14534.13678-147E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13678-147E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsWi38CtcfStdRawRep2 WI-38 CTCF Sg 2 bigWig 1.000000 8270.000000 WI-38 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW 2 370 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WI-38 CTCF TFBS ChIP-seq Raw Signal 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel WI-38 CTCF Sg 2\ subGroups view=zRSig factor=CTCF cellType=t3WI38 rep=rep2 treatment=aNone\ track wgEncodeUwTfbsWi38CtcfStdRawRep2\ type bigWig 1.000000 8270.000000\ wgEncodeSydhTfbsA549Pol2s2IggrabPk A549 PolS IgR narrowPeak A549 Pol2 S2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 371 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 Pol2 S2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel A549 PolS IgR\ subGroups view=Peaks factor=POL2S2 cellType=t2A549 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsA549Pol2s2IggrabPk\ type narrowPeak\ wgEncodeUwHistoneHaspH3k4me3StdRawRep2 HAsp H3K4M3 Sg 2 bigWig 1.000000 7657.000000 HA-sp H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 371 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HA-sp H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HAsp H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HASP rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHaspH3k4me3StdRawRep2\ type bigWig 1.000000 7657.000000\ wgEncodeAwgTfbsHaibHepg2Cebpdsc636V0416101UniPk HepG2 CEBPD h2 narrowPeak HepG2 TFBS Uniform Peaks of CEBPD_(SC-636) from ENCODE/HudsonAlpha/Analysis 1 371 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of CEBPD_(SC-636) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 CEBPD h2\ subGroups tier=a20 cellType=a20HEPG2 factor=CEBPD lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Cebpdsc636V0416101UniPk\ encTfChipPkENCFF002ROJ HepG2 FOXA2 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA2 in HepG2 from ENCODE 3 (ENCFF002ROJ) 1 371 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of FOXA2 in HepG2 from ENCODE 3 (ENCFF002ROJ)\ parent encTfChipPk off\ shortLabel HepG2 FOXA2 1\ subGroups cellType=HepG2 factor=FOXA2\ track encTfChipPkENCFF002ROJ\ wgEncodeBroadHistoneHmecH3k09me3Sig HMEC H3K9m3 bigWig 0.040000 54316.718750 HMEC H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 371 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HMEC H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HMEC H3K9m3\ subGroups view=Signal factor=H3K09ME3 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k09me3Sig\ type bigWig 0.040000 54316.718750\ wgEncodeUwDnaseHmveclblPkRep2 HMVECLBl Pk 2 narrowPeak HMVEC-LBl DNaseI HS Peaks Rep 2 from ENCODE/UW 1 371 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-LBl DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMVECLBl Pk 2\ subGroups view=Peaks cellType=t3HMVECLBL rep=rep2 treatment=None\ track wgEncodeUwDnaseHmveclblPkRep2\ type narrowPeak\ wgEncodeRikenCageHpcplCellPapPlusRawRep2 HPCP cell pA+ + 2 bigWig 1.000000 1135900.000000 HPC-PL whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 371 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPC-PL whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HPCP cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3HPCPL localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHpcplCellPapPlusRawRep2\ type bigWig 1.000000 1135900.000000\ wgEncodeCshlShortRnaSeqHvmf60912033CellShorttotalTapMinusRep1 HVMF cell TAP - 1 bigWig 1.000000 30661662.000000 HVMF TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 371 0 0 0 127 127 127 0 0 0 expression 0 longLabel HVMF TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HVMF cell TAP - 1\ subGroups view=MinusSignal cellType=t3HVMF localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHvmf60912033CellShorttotalTapMinusRep1\ type bigWig 1.000000 30661662.000000\ wgEncodeCshlLongRnaSeqImr90NucleusPapAlnRep2 IMR90 nuc pA+ A 2 bam IMR90 nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 371 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel IMR90 nuc pA+ A 2\ subGroups view=Alignments cellType=t2IMR90 localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqImr90NucleusPapAlnRep2\ type bam\ wgEncodeHaibTfbsK562Egr1V0416101PkRep1 K562 Egr-1 V101 1 broadPeak K562 Egr-1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 371 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Egr-1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 Egr-1 V101 1\ subGroups view=Peaks factor=EGR1 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Egr1V0416101PkRep1\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_ctss_fwd Tc:ARPE-19Emt_24hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_forward 0 371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep1.CNhs14535.13679-147E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13679-147E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_24hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_tpm_fwd Tc:ARPE-19Emt_24hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_forward 1 371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep1.CNhs14535.13679-147E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13679-147E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_24hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsWi38InputStdRawRep1 WI-38 In Sg 1 bigWig 1.000000 13078.000000 WI-38 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 371 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WI-38 Input TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel WI-38 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3WI38 rep=rep1 treatment=aNone\ track wgEncodeUwTfbsWi38InputStdRawRep1\ type bigWig 1.000000 13078.000000\ wgEncodeSydhTfbsA549Pol2s2IggrabSig A549 PolS IgR bigWig 1.000000 16207.000000 A549 Pol2 S2 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 372 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Pol2 S2 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel A549 PolS IgR\ subGroups view=Signal factor=POL2S2 cellType=t2A549 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsA549Pol2s2IggrabSig\ type bigWig 1.000000 16207.000000\ wgEncodeUwHistoneHaspInputStdRawRep1 HAsp In Sg 1 bigWig 1.000000 22062.000000 HA-sp Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 372 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HA-sp Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HAsp In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HASP rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHaspInputStdRawRep1\ type bigWig 1.000000 22062.000000\ wgEncodeAwgTfbsSydhHepg2Chd2ab68301IggrabUniPk HepG2 CHD2 narrowPeak HepG2 TFBS Uniform Peaks of CHD2_(AB68301) from ENCODE/Stanford/Analysis 1 372 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of CHD2_(AB68301) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 CHD2\ subGroups tier=a20 cellType=a20HEPG2 factor=CHD2 lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Chd2ab68301IggrabUniPk\ encTfChipPkENCFF683KBO HepG2 FOXA2 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA2 in HepG2 from ENCODE 3 (ENCFF683KBO) 1 372 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of FOXA2 in HepG2 from ENCODE 3 (ENCFF683KBO)\ parent encTfChipPk off\ shortLabel HepG2 FOXA2 2\ subGroups cellType=HepG2 factor=FOXA2\ track encTfChipPkENCFF683KBO\ wgEncodeBroadHistoneHmecH3k27acStdPk HMEC H3K27ac broadPeak HMEC H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 372 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMEC H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HMEC H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k27acStdPk\ type broadPeak\ wgEncodeUwDnaseHmveclblRawRep2 HMVECLBl Sg 2 bigWig 1.000000 23569.000000 HMVEC-LBl DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 372 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-LBl DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMVECLBl Sg 2\ subGroups view=zRSig cellType=t3HMVECLBL rep=rep2 treatment=None\ track wgEncodeUwDnaseHmveclblRawRep2\ type bigWig 1.000000 23569.000000\ wgEncodeRikenCageHpcplCellPapMinusRawRep1 HPCP cell pA+ - 1 bigWig 1.000000 636717.000000 HPC-PL whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 372 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPC-PL whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HPCP cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3HPCPL localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHpcplCellPapMinusRawRep1\ type bigWig 1.000000 636717.000000\ wgEncodeCshlShortRnaSeqHvmf61004013CellShorttotalTapMinusRep2 HVMF cell TAP - 2 bigWig 1.000000 32525208.000000 HVMF TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 372 0 0 0 127 127 127 0 0 0 expression 0 longLabel HVMF TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HVMF cell TAP - 2\ subGroups view=MinusSignal cellType=t3HVMF localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHvmf61004013CellShorttotalTapMinusRep2\ type bigWig 1.000000 32525208.000000\ wgEncodeCshlLongRnaSeqImr90NucleusPapContigs IMR90 nuc pA+ C bed 6 + IMR90 nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 372 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel IMR90 nuc pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2IMR90 localization=NUCLEUS rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqImr90NucleusPapContigs\ type bed 6 +\ wgEncodeHaibTfbsK562Egr1V0416101RawRep1 K562 Egr-1 V101 1 bigWig 0.195682 357.803986 K562 Egr-1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 372 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Egr-1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 Egr-1 V101 1\ subGroups view=RawSignal factor=EGR1 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Egr1V0416101RawRep1\ type bigWig 0.195682 357.803986\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_ctss_rev Tc:ARPE-19Emt_24hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_reverse 0 372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep1.CNhs14535.13679-147E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13679-147E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_24hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_tpm_rev Tc:ARPE-19Emt_24hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_reverse 1 372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep1.CNhs14535.13679-147E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13679-147E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_24hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7\ urlLabel FANTOM5 Details:\ wgEncodeUwTfbsWi38InputOhtamStdRawRep1 WI-38 In TAM Sg 1 bigWig 1.000000 18598.000000 WI-38 Input OH-tamoxifen 20 nM TFBS ChIP-seq Raw Signal 1 from ENCODE/UW 2 372 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WI-38 Input OH-tamoxifen 20 nM TFBS ChIP-seq Raw Signal 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwTfbsViewRawSig off\ shortLabel WI-38 In TAM Sg 1\ subGroups view=zRSig factor=zInput cellType=t3WI38 treatment=OHTAM rep=rep1\ track wgEncodeUwTfbsWi38InputOhtamStdRawRep1\ type bigWig 1.000000 18598.000000\ wgEncodeSydhTfbsA549Rad21IggrabPk A549 Rad2 IgR narrowPeak A549 Rad21 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 373 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 Rad21 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel A549 Rad2 IgR\ subGroups view=Peaks factor=RAD21 cellType=t2A549 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsA549Rad21IggrabPk\ type narrowPeak\ wgEncodeUwHistoneHbmecH3k4me3StdHotspotsRep1 HBMEC H3K4M3 Ht 1 broadPeak HBMEC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 373 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBMEC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HBMEC H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HBMEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHbmecH3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeAwgTfbsBroadHepg2CtcfUniPk HepG2 CTCF b narrowPeak HepG2 TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis 1 373 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 CTCF b\ subGroups tier=a20 cellType=a20HEPG2 factor=CTCF lab=Broad\ track wgEncodeAwgTfbsBroadHepg2CtcfUniPk\ encTfChipPkENCFF144FQA HepG2 FOXK2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXK2 in HepG2 from ENCODE 3 (ENCFF144FQA) 1 373 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of FOXK2 in HepG2 from ENCODE 3 (ENCFF144FQA)\ parent encTfChipPk off\ shortLabel HepG2 FOXK2\ subGroups cellType=HepG2 factor=FOXK2\ track encTfChipPkENCFF144FQA\ wgEncodeBroadHistoneHmecH3k27acStdSig HMEC H3K27ac bigWig 0.040000 7273.600098 HMEC H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 373 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HMEC H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HMEC H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k27acStdSig\ type bigWig 0.040000 7273.600098\ wgEncodeUwDnaseHmvecllyHotspotsRep1 HMVECLLy Ht 1 broadPeak HMVEC-LLy DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 373 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-LLy DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMVECLLy Ht 1\ subGroups view=Hot cellType=t3HMVECLLY rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecllyHotspotsRep1\ type broadPeak\ wgEncodeRikenCageHpcplCellPapMinusRawRep2 HPCP cell pA+ - 2 bigWig 1.000000 818934.000000 HPC-PL whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 373 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPC-PL whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HPCP cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3HPCPL localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHpcplCellPapMinusRawRep2\ type bigWig 1.000000 818934.000000\ wgEncodeCshlShortRnaSeqHvmf60912033CellShorttotalTapPlusRep1 HVMF cell TAP + 1 bigWig 1.000000 2901782.000000 HVMF TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 373 0 0 0 127 127 127 0 0 0 expression 0 longLabel HVMF TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HVMF cell TAP + 1\ subGroups view=PlusSignal cellType=t3HVMF localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHvmf60912033CellShorttotalTapPlusRep1\ type bigWig 1.000000 2901782.000000\ wgEncodeCshlLongRnaSeqImr90NucleusPapJunctions IMR90 nuc pA+ J bed 6 + IMR90 nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 373 0 0 0 127 127 127 0 0 0 expression 1 longLabel IMR90 nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel IMR90 nuc pA+ J\ subGroups view=Junctions cellType=t2IMR90 localization=NUCLEUS rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqImr90NucleusPapJunctions\ type bed 6 +\ wgEncodeHaibTfbsK562Egr1V0416101PkRep2 K562 Egr-1 V101 2 broadPeak K562 Egr-1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 373 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Egr-1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 Egr-1 V101 2\ subGroups view=Peaks factor=EGR1 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Egr1V0416101PkRep2\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_ctss_fwd Tc:ARPE-19Emt_24hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_forward 0 373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep3.CNhs14537.13681-147E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13681-147E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_24hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_tpm_fwd Tc:ARPE-19Emt_24hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_forward 1 373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep3.CNhs14537.13681-147E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13681-147E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_24hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsA549Rad21IggrabSig A549 Rad2 IgR bigWig 1.000000 20851.000000 A549 Rad21 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 374 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Rad21 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel A549 Rad2 IgR\ subGroups view=Signal factor=RAD21 cellType=t2A549 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsA549Rad21IggrabSig\ type bigWig 1.000000 20851.000000\ wgEncodeUwHistoneHbmecH3k4me3StdPkRep1 HBMEC H3K4M3 Pk 1 narrowPeak HBMEC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 374 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBMEC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HBMEC H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HBMEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHbmecH3k4me3StdPkRep1\ type narrowPeak\ wgEncodeAwgTfbsHaibHepg2Ctcfsc5916V0416101UniPk HepG2 CTCF h narrowPeak HepG2 TFBS Uniform Peaks of CTCF_(SC-5916) from ENCODE/HudsonAlpha/Analysis 1 374 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of CTCF_(SC-5916) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 CTCF h\ subGroups tier=a20 cellType=a20HEPG2 factor=CTCF lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Ctcfsc5916V0416101UniPk\ encTfChipPkENCFF501KPU HepG2 FOXP1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXP1 in HepG2 from ENCODE 3 (ENCFF501KPU) 1 374 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of FOXP1 in HepG2 from ENCODE 3 (ENCFF501KPU)\ parent encTfChipPk off\ shortLabel HepG2 FOXP1\ subGroups cellType=HepG2 factor=FOXP1\ track encTfChipPkENCFF501KPU\ wgEncodeBroadHistoneHmecH3k27me3StdPk HMEC H3K27m3 broadPeak HMEC H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 374 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMEC H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HMEC H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k27me3StdPk\ type broadPeak\ wgEncodeUwDnaseHmvecllyPkRep1 HMVECLLy Pk 1 narrowPeak HMVEC-LLy DNaseI HS Peaks Rep 1 from ENCODE/UW 1 374 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-LLy DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMVECLLy Pk 1\ subGroups view=Peaks cellType=t3HMVECLLY rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecllyPkRep1\ type narrowPeak\ wgEncodeRikenCageHpcplCellPapAlnRep1 HPCP cell pA+ A 1 bam HPC-PL whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 374 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPC-PL whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HPCP cell pA+ A 1\ subGroups view=Alignments cellType=t3HPCPL localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHpcplCellPapAlnRep1\ type bam\ wgEncodeCshlShortRnaSeqHvmf61004013CellShorttotalTapPlusRep2 HVMF cell TAP + 2 bigWig 1.000000 5214712.000000 HVMF TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 374 0 0 0 127 127 127 0 0 0 expression 0 longLabel HVMF TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HVMF cell TAP + 2\ subGroups view=PlusSignal cellType=t3HVMF localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHvmf61004013CellShorttotalTapPlusRep2\ type bigWig 1.000000 5214712.000000\ wgEncodeCshlLongRnaSeqImr90NucleusPapMinusRep1 IMR90 nuc pA+ - 1 bigWig 1.000000 690540.000000 IMR90 nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 374 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel IMR90 nuc pA+ - 1\ subGroups view=MinusSignal cellType=t2IMR90 localization=NUCLEUS rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqImr90NucleusPapMinusRep1\ type bigWig 1.000000 690540.000000\ wgEncodeHaibTfbsK562Egr1V0416101RawRep2 K562 Egr-1 V101 2 bigWig 0.132550 129.865997 K562 Egr-1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 374 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Egr-1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 Egr-1 V101 2\ subGroups view=RawSignal factor=EGR1 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Egr1V0416101RawRep2\ type bigWig 0.132550 129.865997\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_ctss_rev Tc:ARPE-19Emt_24hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_reverse 0 374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep3.CNhs14537.13681-147E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13681-147E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_24hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_tpm_rev Tc:ARPE-19Emt_24hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_reverse 1 374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep3.CNhs14537.13681-147E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13681-147E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_24hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsA549InputIggrabSig A549 Inpt IgR bigWig 1.000000 20411.000000 A549 Input IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 375 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Input IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel A549 Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t2A549 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsA549InputIggrabSig\ type bigWig 1.000000 20411.000000\ wgEncodeUwHistoneHbmecH3k4me3StdRawRep1 HBMEC H3K4M3 Sg 1 bigWig 1.000000 2636.000000 HBMEC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 375 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HBMEC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HBMEC H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HBMEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHbmecH3k4me3StdRawRep1\ type bigWig 1.000000 2636.000000\ wgEncodeAwgTfbsUtaHepg2CtcfUniPk HepG2 CTCF t narrowPeak HepG2 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 375 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel HepG2 CTCF t\ subGroups tier=a20 cellType=a20HEPG2 factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaHepg2CtcfUniPk\ encTfChipPkENCFF950KWC HepG2 FUS narrowPeak Transcription Factor ChIP-seq Peaks of FUS in HepG2 from ENCODE 3 (ENCFF950KWC) 1 375 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of FUS in HepG2 from ENCODE 3 (ENCFF950KWC)\ parent encTfChipPk off\ shortLabel HepG2 FUS\ subGroups cellType=HepG2 factor=FUS\ track encTfChipPkENCFF950KWC\ wgEncodeBroadHistoneHmecH3k27me3StdSig HMEC H3K27m3 bigWig 0.040000 10112.240234 HMEC H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 375 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HMEC H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HMEC H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k27me3StdSig\ type bigWig 0.040000 10112.240234\ wgEncodeUwDnaseHmvecllyRawRep1 HMVECLLy Sg 1 bigWig 1.000000 64382.000000 HMVEC-LLy DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 375 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-LLy DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMVECLLy Sg 1\ subGroups view=zRSig cellType=t3HMVECLLY rep=rep1 treatment=None\ track wgEncodeUwDnaseHmvecllyRawRep1\ type bigWig 1.000000 64382.000000\ wgEncodeRikenCageHpcplCellPapAlnRep2 HPCP cell pA+ A 2 bam HPC-PL whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 375 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPC-PL whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HPCP cell pA+ A 2\ subGroups view=Alignments cellType=t3HPCPL localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHpcplCellPapAlnRep2\ type bam\ wgEncodeCshlShortRnaSeqHwpCellTapContigs HWP cell TAP C bed 6 HWP TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 375 0 0 0 127 127 127 0 0 0 expression 1 longLabel HWP TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel HWP cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t3HWP localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqHwpCellTapContigs\ type bed 6\ wgEncodeCshlLongRnaSeqImr90NucleusPapMinusRep2 IMR90 nuc pA+ - 2 bigWig 1.000000 470206.000000 IMR90 nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 375 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel IMR90 nuc pA+ - 2\ subGroups view=MinusSignal cellType=t2IMR90 localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqImr90NucleusPapMinusRep2\ type bigWig 1.000000 470206.000000\ wgEncodeHaibTfbsK562Elf1sc631V0416102PkRep1 K562 ELF1 V102 1 broadPeak K562 ELF1 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 375 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ELF1 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 ELF1 V102 1\ subGroups view=Peaks factor=ELF1SC631 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Elf1sc631V0416102PkRep1\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_ctss_fwd Tc:ARPE-19Emt_42hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_forward 0 375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep1.CNhs14538.13682-147F1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13682-147F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_tpm_fwd Tc:ARPE-19Emt_42hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_forward 1 375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep1.CNhs14538.13682-147F1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13682-147F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHbmecH3k4me3StdHotspotsRep2 HBMEC H3K4M3 Ht 2 broadPeak HBMEC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 376 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBMEC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HBMEC H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HBMEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHbmecH3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeSydhTfbsHelas3Ap2alphaStdPk HeLa AP2a Std narrowPeak HeLa-S3 AP-2a Standard ChIP-seq Peaks from ENCODE/SYDH 3 376 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 AP-2a Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa AP2a Std\ subGroups view=Peaks factor=AP2alpha cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Ap2alphaStdPk\ type narrowPeak\ wgEncodeAwgTfbsUwHepg2CtcfUniPk HepG2 CTCF w narrowPeak HepG2 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 376 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 CTCF w\ subGroups tier=a20 cellType=a20HEPG2 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHepg2CtcfUniPk\ encTfChipPkENCFF065EPE HepG2 GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in HepG2 from ENCODE 3 (ENCFF065EPE) 1 376 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of GABPA in HepG2 from ENCODE 3 (ENCFF065EPE)\ parent encTfChipPk off\ shortLabel HepG2 GABPA\ subGroups cellType=HepG2 factor=GABPA\ track encTfChipPkENCFF065EPE\ wgEncodeBroadHistoneHmecH3k36me3StdPk HMEC H3K36m3 broadPeak HMEC H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 376 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMEC H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HMEC H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k36me3StdPk\ type broadPeak\ wgEncodeUwDnaseHmvecllyHotspotsRep2 HMVECLLy Ht 2 broadPeak HMVEC-LLy DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 376 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-LLy DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HMVECLLy Ht 2\ subGroups view=Hot cellType=t3HMVECLLY rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecllyHotspotsRep2\ type broadPeak\ wgEncodeRikenCageHpiepcCellPapTssHmm HPIE cell pA+ bed 6 HPIEpC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 376 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPIEpC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HPIE cell pA+\ subGroups view=TssHmm cellType=t3HPIEPC localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHpiepcCellPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqHwpCellTapMinusRep1 HWP cell TAP - 1 bigWig 1.000000 66054032.000000 HWP TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 376 0 0 0 127 127 127 0 0 0 expression 0 longLabel HWP TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HWP cell TAP - 1\ subGroups view=MinusSignal cellType=t3HWP localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHwpCellTapMinusRep1\ type bigWig 1.000000 66054032.000000\ wgEncodeCshlLongRnaSeqImr90NucleusPapPlusRep1 IMR90 nuc pA+ + 1 bigWig 1.000000 246866.000000 IMR90 nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 376 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel IMR90 nuc pA+ + 1\ subGroups view=PlusSignal cellType=t2IMR90 localization=NUCLEUS rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqImr90NucleusPapPlusRep1\ type bigWig 1.000000 246866.000000\ wgEncodeHaibTfbsK562Elf1sc631V0416102RawRep1 K562 ELF1 V102 1 bigWig 0.407791 202.468002 K562 ELF1 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 376 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ELF1 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 ELF1 V102 1\ subGroups view=RawSignal factor=ELF1SC631 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Elf1sc631V0416102RawRep1\ type bigWig 0.407791 202.468002\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_ctss_rev Tc:ARPE-19Emt_42hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_reverse 0 376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep1.CNhs14538.13682-147F1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13682-147F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_tpm_rev Tc:ARPE-19Emt_42hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_reverse 1 376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep1.CNhs14538.13682-147F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13682-147F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHbmecH3k4me3StdPkRep2 HBMEC H3K4M3 Pk 2 narrowPeak HBMEC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 377 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBMEC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HBMEC H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HBMEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHbmecH3k4me3StdPkRep2\ type narrowPeak\ wgEncodeSydhTfbsHelas3Ap2alphaStdSig HeLa AP2a Std bigWig 0.000000 7439.200195 HeLa-S3 AP-2a Standard ChIP-seq Signal from ENCODE/SYDH 2 377 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 AP-2a Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa AP2a Std\ subGroups view=Signal factor=AP2alpha cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Ap2alphaStdSig\ type bigWig 0.000000 7439.200195\ wgEncodeAwgTfbsHaibHepg2Elf1sc631V0416101UniPk HepG2 ELF1 narrowPeak HepG2 TFBS Uniform Peaks of ELF1_(SC-631) from ENCODE/HudsonAlpha/Analysis 1 377 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of ELF1_(SC-631) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 ELF1\ subGroups tier=a20 cellType=a20HEPG2 factor=ELF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Elf1sc631V0416101UniPk\ encTfChipPkENCFF210DMP HepG2 GATA4 narrowPeak Transcription Factor ChIP-seq Peaks of GATA4 in HepG2 from ENCODE 3 (ENCFF210DMP) 1 377 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of GATA4 in HepG2 from ENCODE 3 (ENCFF210DMP)\ parent encTfChipPk off\ shortLabel HepG2 GATA4\ subGroups cellType=HepG2 factor=GATA4\ track encTfChipPkENCFF210DMP\ wgEncodeBroadHistoneHmecH3k36me3StdSig HMEC H3K36m3 bigWig 0.040000 10746.120117 HMEC H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 377 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HMEC H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HMEC H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k36me3StdSig\ type bigWig 0.040000 10746.120117\ wgEncodeUwDnaseHmvecllyPkRep2 HMVECLLy Pk 2 narrowPeak HMVEC-LLy DNaseI HS Peaks Rep 2 from ENCODE/UW 1 377 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMVEC-LLy DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HMVECLLy Pk 2\ subGroups view=Peaks cellType=t3HMVECLLY rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecllyPkRep2\ type narrowPeak\ wgEncodeRikenCageHpiepcCellPapPlusRawRep1 HPIE cell pA+ + 1 bigWig 1.000000 124010.000000 HPIEpC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 377 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPIEpC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HPIE cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3HPIEPC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHpiepcCellPapPlusRawRep1\ type bigWig 1.000000 124010.000000\ wgEncodeCshlShortRnaSeqHwpCellTapMinusRep2 HWP cell TAP - 2 bigWig 1.000000 40354152.000000 HWP TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 377 0 0 0 127 127 127 0 0 0 expression 0 longLabel HWP TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel HWP cell TAP - 2\ subGroups view=MinusSignal cellType=t3HWP localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHwpCellTapMinusRep2\ type bigWig 1.000000 40354152.000000\ wgEncodeCshlLongRnaSeqImr90NucleusPapPlusRep2 IMR90 nuc pA+ + 2 bigWig 1.000000 122470.000000 IMR90 nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 377 0 0 0 127 127 127 0 0 0 expression 0 longLabel IMR90 nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel IMR90 nuc pA+ + 2\ subGroups view=PlusSignal cellType=t2IMR90 localization=NUCLEUS rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqImr90NucleusPapPlusRep2\ type bigWig 1.000000 122470.000000\ wgEncodeHaibTfbsK562Elf1sc631V0416102PkRep2 K562 ELF1 V102 2 broadPeak K562 ELF1 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 377 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ELF1 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 ELF1 V102 2\ subGroups view=Peaks factor=ELF1SC631 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Elf1sc631V0416102PkRep2\ type broadPeak\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_ctss_fwd Tc:ARPE-19Emt_42hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_forward 0 377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep2.CNhs14539.13683-147F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13683-147F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_tpm_fwd Tc:ARPE-19Emt_42hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_forward 1 377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep2.CNhs14539.13683-147F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13683-147F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHbmecH3k4me3StdRawRep2 HBMEC H3K4M3 Sg 2 bigWig 1.000000 2812.000000 HBMEC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 378 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HBMEC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HBMEC H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HBMEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHbmecH3k4me3StdRawRep2\ type bigWig 1.000000 2812.000000\ wgEncodeSydhTfbsHelas3Ap2gammaStdPk HeLa AP2g Std narrowPeak HeLa-S3 AP-2g Standard ChIP-seq Peaks from ENCODE/SYDH 3 378 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 AP-2g Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa AP2g Std\ subGroups view=Peaks factor=AP2gamma cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Ap2gammaStdPk\ type narrowPeak\ wgEncodeAwgTfbsHaibHepg2P300V0416101UniPk HepG2 EP300 h narrowPeak HepG2 TFBS Uniform Peaks of p300 from ENCODE/HudsonAlpha/Analysis 1 378 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of p300 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 EP300 h\ subGroups tier=a20 cellType=a20HEPG2 factor=EP300 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2P300V0416101UniPk\ encTfChipPkENCFF997AAW HepG2 HCFC1 narrowPeak Transcription Factor ChIP-seq Peaks of HCFC1 in HepG2 from ENCODE 3 (ENCFF997AAW) 1 378 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of HCFC1 in HepG2 from ENCODE 3 (ENCFF997AAW)\ parent encTfChipPk off\ shortLabel HepG2 HCFC1\ subGroups cellType=HepG2 factor=HCFC1\ track encTfChipPkENCFF997AAW\ wgEncodeBroadHistoneHmecH3k79me2Pk HMEC H3K79m2 broadPeak HMEC H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 378 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMEC H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HMEC H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k79me2Pk\ type broadPeak\ wgEncodeUwDnaseHmvecllyRawRep2 HMVECLLy Sg 2 bigWig 1.000000 50197.000000 HMVEC-LLy DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 378 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMVEC-LLy DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HMVECLLy Sg 2\ subGroups view=zRSig cellType=t3HMVECLLY rep=rep2 treatment=None\ track wgEncodeUwDnaseHmvecllyRawRep2\ type bigWig 1.000000 50197.000000\ wgEncodeRikenCageHpiepcCellPapPlusRawRep2 HPIE cell pA+ + 2 bigWig 1.000000 23015.000000 HPIEpC whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 378 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPIEpC whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HPIE cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3HPIEPC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHpiepcCellPapPlusRawRep2\ type bigWig 1.000000 23015.000000\ wgEncodeCshlShortRnaSeqHwpCellTapPlusRep1 HWP cell TAP + 1 bigWig 1.000000 9672967.000000 HWP TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 378 0 0 0 127 127 127 0 0 0 expression 0 longLabel HWP TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HWP cell TAP + 1\ subGroups view=PlusSignal cellType=t3HWP localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqHwpCellTapPlusRep1\ type bigWig 1.000000 9672967.000000\ wgEncodeHaibTfbsK562Elf1sc631V0416102RawRep2 K562 ELF1 V102 2 bigWig 0.166924 207.028000 K562 ELF1 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 378 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ELF1 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 ELF1 V102 2\ subGroups view=RawSignal factor=ELF1SC631 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Elf1sc631V0416102RawRep2\ type bigWig 0.166924 207.028000\ wgEncodeCshlLongRnaSeqMcf7CellLongnonpolyaAlnRep1 MCF7 cel pA- A 1 bam MCF-7 whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 378 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel MCF7 cel pA- A 1\ subGroups view=Alignments cellType=t2MCF7 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqMcf7CellLongnonpolyaAlnRep1\ type bam\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_ctss_rev Tc:ARPE-19Emt_42hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_reverse 0 378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep2.CNhs14539.13683-147F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13683-147F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_tpm_rev Tc:ARPE-19Emt_42hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_reverse 1 378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep2.CNhs14539.13683-147F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13683-147F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHbmecInputStdRawRep1 HBMEC In Sg 1 bigWig 1.000000 15288.000000 HBMEC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 379 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HBMEC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HBMEC In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HBMEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHbmecInputStdRawRep1\ type bigWig 1.000000 15288.000000\ wgEncodeSydhTfbsHelas3Ap2gammaStdSig HeLa AP2g Std bigWig 0.000000 5079.200195 HeLa-S3 AP-2g Standard ChIP-seq Signal from ENCODE/SYDH 2 379 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 AP-2g Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa AP2g Std\ subGroups view=Signal factor=AP2gamma cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Ap2gammaStdSig\ type bigWig 0.000000 5079.200195\ wgEncodeAwgTfbsSydhHepg2P300sc582IggrabUniPk HepG2 EP300 s narrowPeak HepG2 TFBS Uniform Peaks of p300_(SC-584) from ENCODE/Stanford/Analysis 1 379 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of p300_(SC-584) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel HepG2 EP300 s\ subGroups tier=a20 cellType=a20HEPG2 factor=EP300 lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2P300sc582IggrabUniPk\ encTfChipPkENCFF384XDG HepG2 HDAC1 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC1 in HepG2 from ENCODE 3 (ENCFF384XDG) 1 379 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of HDAC1 in HepG2 from ENCODE 3 (ENCFF384XDG)\ parent encTfChipPk off\ shortLabel HepG2 HDAC1\ subGroups cellType=HepG2 factor=HDAC1\ track encTfChipPkENCFF384XDG\ wgEncodeBroadHistoneHmecH3k79me2Sig HMEC H3K79m2 bigWig 0.040000 5229.520020 HMEC H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 379 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HMEC H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HMEC H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH3k79me2Sig\ type bigWig 0.040000 5229.520020\ wgEncodeUwDnaseHnpceHotspotsRep1 HNPCEpiC Ht 1 broadPeak HNPCEpiC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 379 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HNPCEpiC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HNPCEpiC Ht 1\ subGroups view=Hot cellType=t3HNPCEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHnpceHotspotsRep1\ type broadPeak\ wgEncodeRikenCageHpiepcCellPapMinusRawRep1 HPIE cell pA+ - 1 bigWig 1.000000 133226.000000 HPIEpC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 379 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPIEpC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HPIE cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3HPIEPC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHpiepcCellPapMinusRawRep1\ type bigWig 1.000000 133226.000000\ wgEncodeCshlShortRnaSeqHwpCellTapPlusRep2 HWP cell TAP + 2 bigWig 1.000000 10266937.000000 HWP TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 379 0 0 0 127 127 127 0 0 0 expression 0 longLabel HWP TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel HWP cell TAP + 2\ subGroups view=PlusSignal cellType=t3HWP localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqHwpCellTapPlusRep2\ type bigWig 1.000000 10266937.000000\ wgEncodeHaibTfbsK562Ets1V0416101PkRep1 K562 ETS1 V101 1 broadPeak K562 ETS1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 379 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ETS1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 ETS1 V101 1\ subGroups view=Peaks factor=ETS1 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Ets1V0416101PkRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqMcf7CellLongnonpolyaAlnRep2 MCF7 cel pA- A 2 bam MCF-7 whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 379 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel MCF7 cel pA- A 2\ subGroups view=Alignments cellType=t2MCF7 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqMcf7CellLongnonpolyaAlnRep2\ type bam\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_ctss_fwd Tc:ARPE-19Emt_42hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_forward 0 379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep3.CNhs14540.13684-147F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13684-147F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_tpm_fwd Tc:ARPE-19Emt_42hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_forward 1 379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep3.CNhs14540.13684-147F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13684-147F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcfH3k4me3StdHotspotsRep1 HCF H3K4M3 Ht 1 broadPeak HCF H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 380 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCF H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HCF H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HCF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHcfH3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeSydhTfbsHelas3Baf155IggmusPk HeLa BAF5 IgM narrowPeak HeLa-S3 BAF155 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 380 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 BAF155 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa BAF5 IgM\ subGroups view=Peaks factor=BAF155 cellType=t2HELAS3 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsHelas3Baf155IggmusPk\ type narrowPeak\ encTfChipPkENCFF503AZK HepG2 HDAC2 1 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in HepG2 from ENCODE 3 (ENCFF503AZK) 1 380 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in HepG2 from ENCODE 3 (ENCFF503AZK)\ parent encTfChipPk off\ shortLabel HepG2 HDAC2 1\ subGroups cellType=HepG2 factor=HDAC2\ track encTfChipPkENCFF503AZK\ wgEncodeAwgTfbsSydhHepg2ErraForsklnUniPk HepG2+forsk ESRRA narrowPeak HepG2 (forskolin) TFBS Uniform Peaks of ERRA from ENCODE/Stanford/Analysis 1 380 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 (forskolin) TFBS Uniform Peaks of ERRA from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2+forsk ESRRA\ subGroups tier=a20 cellType=a20HEPG2 factor=ESRRA lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2ErraForsklnUniPk\ wgEncodeBroadHistoneHmecH4k20me1StdPk HMEC H4K20m1 broadPeak HMEC H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 380 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HMEC H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HMEC H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH4k20me1StdPk\ type broadPeak\ wgEncodeUwDnaseHnpcePkRep1 HNPCEpiC Pk 1 narrowPeak HNPCEpiC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 380 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HNPCEpiC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HNPCEpiC Pk 1\ subGroups view=Peaks cellType=t3HNPCEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHnpcePkRep1\ type narrowPeak\ wgEncodeRikenCageHpiepcCellPapMinusRawRep2 HPIE cell pA+ - 2 bigWig 1.000000 17090.000000 HPIEpC whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 380 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPIEpC whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HPIE cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3HPIEPC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHpiepcCellPapMinusRawRep2\ type bigWig 1.000000 17090.000000\ wgEncodeHaibTfbsK562Ets1V0416101RawRep1 K562 ETS1 V101 1 bigWig 0.256989 122.776001 K562 ETS1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 380 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ETS1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 ETS1 V101 1\ subGroups view=RawSignal factor=ETS1 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Ets1V0416101RawRep1\ type bigWig 0.256989 122.776001\ wgEncodeCshlLongRnaSeqMcf7CellPamContigs MCF7 cel pA- C bed 6 + MCF-7 whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 380 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel MCF7 cel pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2MCF7 localization=CELL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqMcf7CellPamContigs\ type bed 6 +\ wgEncodeCshlShortRnaSeqNhdfCellTapContigs NHDF cell TAP C bed 6 NHDF TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 380 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHDF TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel NHDF cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t3NHDF localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqNhdfCellTapContigs\ type bed 6\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_ctss_rev Tc:ARPE-19Emt_42hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_reverse 0 380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep3.CNhs14540.13684-147F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13684-147F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_tpm_rev Tc:ARPE-19Emt_42hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_reverse 1 380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep3.CNhs14540.13684-147F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13684-147F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcfH3k4me3StdPkRep1 HCF H3K4M3 Pk 1 narrowPeak HCF H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 381 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCF H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HCF H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HCF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHcfH3k4me3StdPkRep1\ type narrowPeak\ wgEncodeSydhTfbsHelas3Baf155IggmusSig HeLa BAF5 IgM bigWig 0.000000 8446.500000 HeLa-S3 BAF155 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 381 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 BAF155 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa BAF5 IgM\ subGroups view=Signal factor=BAF155 cellType=t2HELAS3 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsHelas3Baf155IggmusSig\ type bigWig 0.000000 8446.500000\ wgEncodeAwgTfbsBroadHepg2Ezh239875UniPk HepG2 EZH2 narrowPeak HepG2 TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis 1 381 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 EZH2\ subGroups tier=a20 cellType=a20HEPG2 factor=EZH2 lab=Broad\ track wgEncodeAwgTfbsBroadHepg2Ezh239875UniPk\ encTfChipPkENCFF459DRJ HepG2 HDAC2 2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in HepG2 from ENCODE 3 (ENCFF459DRJ) 1 381 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in HepG2 from ENCODE 3 (ENCFF459DRJ)\ parent encTfChipPk off\ shortLabel HepG2 HDAC2 2\ subGroups cellType=HepG2 factor=HDAC2\ track encTfChipPkENCFF459DRJ\ wgEncodeBroadHistoneHmecH4k20me1StdSig HMEC H4K20m1 bigWig 0.040000 18010.759766 HMEC H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 381 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HMEC H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HMEC H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecH4k20me1StdSig\ type bigWig 0.040000 18010.759766\ wgEncodeUwDnaseHnpceRawRep1 HNPCEpiC Sg 1 bigWig 1.000000 57165.000000 HNPCEpiC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 381 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HNPCEpiC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HNPCEpiC Sg 1\ subGroups view=zRSig cellType=t3HNPCEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHnpceRawRep1\ type bigWig 1.000000 57165.000000\ wgEncodeRikenCageHpiepcCellPapAlnRep1 HPIE cell pA+ A 1 bam HPIEpC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 381 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPIEpC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HPIE cell pA+ A 1\ subGroups view=Alignments cellType=t3HPIEPC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHpiepcCellPapAlnRep1\ type bam\ wgEncodeHaibTfbsK562Ets1V0416101PkRep2 K562 ETS1 V101 2 broadPeak K562 ETS1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 381 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ETS1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 ETS1 V101 2\ subGroups view=Peaks factor=ETS1 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Ets1V0416101PkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqMcf7CellPamJunctions MCF7 cel pA- J bed 6 + MCF-7 whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 381 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel MCF7 cel pA- J\ subGroups view=Junctions cellType=t2MCF7 localization=CELL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqMcf7CellPamJunctions\ type bed 6 +\ wgEncodeCshlShortRnaSeqNhdf70717012CellShorttotalTapMinusRep1 NHDF cell TAP - 1 bigWig 1.000000 20039400.000000 NHDF TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 381 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHDF TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel NHDF cell TAP - 1\ subGroups view=MinusSignal cellType=t3NHDF localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqNhdf70717012CellShorttotalTapMinusRep1\ type bigWig 1.000000 20039400.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_ctss_fwd Tc:ARPE-19Emt_60hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_forward 0 381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep1.CNhs14541.13685-147F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13685-147F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_tpm_fwd Tc:ARPE-19Emt_60hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_forward 1 381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep1.CNhs14541.13685-147F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13685-147F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcfH3k4me3StdRawRep1 HCF H3K4M3 Sg 1 bigWig 1.000000 5505.000000 HCF H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 382 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCF H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HCF H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HCF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHcfH3k4me3StdRawRep1\ type bigWig 1.000000 5505.000000\ wgEncodeSydhTfbsHelas3Baf170IggmusPk HeLa BAF7 IgM narrowPeak HeLa-S3 BAF170 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 382 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 BAF170 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa BAF7 IgM\ subGroups view=Peaks factor=BAF170 cellType=t2HELAS3 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsHelas3Baf170IggmusPk\ type narrowPeak\ wgEncodeAwgTfbsHaibHepg2Fosl2V0416101UniPk HepG2 FOSL2 narrowPeak HepG2 TFBS Uniform Peaks of FOSL2 from ENCODE/HudsonAlpha/Analysis 1 382 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of FOSL2 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 FOSL2\ subGroups tier=a20 cellType=a20HEPG2 factor=FOSL2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Fosl2V0416101UniPk\ encTfChipPkENCFF847HDW HepG2 HDAC6 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC6 in HepG2 from ENCODE 3 (ENCFF847HDW) 1 382 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of HDAC6 in HepG2 from ENCODE 3 (ENCFF847HDW)\ parent encTfChipPk off\ shortLabel HepG2 HDAC6\ subGroups cellType=HepG2 factor=HDAC6\ track encTfChipPkENCFF847HDW\ wgEncodeBroadHistoneHmecControlStdSig HMEC Input bigWig 0.040000 12705.320312 HMEC Input Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 382 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HMEC Input Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HMEC Input\ subGroups view=Signal factor=zCTRL cellType=t3HMEC treatment=zNONE\ track wgEncodeBroadHistoneHmecControlStdSig\ type bigWig 0.040000 12705.320312\ wgEncodeUwDnaseHnpceHotspotsRep2 HNPCEpiC Ht 2 broadPeak HNPCEpiC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 382 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HNPCEpiC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HNPCEpiC Ht 2\ subGroups view=Hot cellType=t3HNPCEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHnpceHotspotsRep2\ type broadPeak\ wgEncodeRikenCageHpiepcCellPapAlnRep2 HPIE cell pA+ A 2 bam HPIEpC whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 382 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPIEpC whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HPIE cell pA+ A 2\ subGroups view=Alignments cellType=t3HPIEPC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHpiepcCellPapAlnRep2\ type bam\ wgEncodeHaibTfbsK562Ets1V0416101RawRep2 K562 ETS1 V101 2 bigWig 0.222782 111.836998 K562 ETS1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 382 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ETS1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 ETS1 V101 2\ subGroups view=RawSignal factor=ETS1 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Ets1V0416101RawRep2\ type bigWig 0.222782 111.836998\ wgEncodeCshlLongRnaSeqMcf7CellLongnonpolyaMinusRawSigRep1 MCF7 cel pA- - 1 bigWig 1.000000 3345629.000000 MCF-7 whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 382 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel MCF7 cel pA- - 1\ subGroups view=MinusSignal cellType=t2MCF7 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqMcf7CellLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 3345629.000000\ wgEncodeCshlShortRnaSeqNhdf00608013CellShorttotalTapMinusRep2 NHDF cell TAP - 2 bigWig 1.000000 20547782.000000 NHDF TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 382 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHDF TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel NHDF cell TAP - 2\ subGroups view=MinusSignal cellType=t3NHDF localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqNhdf00608013CellShorttotalTapMinusRep2\ type bigWig 1.000000 20547782.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_ctss_rev Tc:ARPE-19Emt_60hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_reverse 0 382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep1.CNhs14541.13685-147F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13685-147F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_tpm_rev Tc:ARPE-19Emt_60hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_reverse 1 382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep1.CNhs14541.13685-147F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13685-147F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcfH3k4me3StdHotspotsRep2 HCF H3K4M3 Ht 2 broadPeak HCF H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 383 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCF H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HCF H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HCF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHcfH3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeSydhTfbsHelas3Baf170IggmusSig HeLa BAF7 IgM bigWig 0.000000 7705.700195 HeLa-S3 BAF170 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 383 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 BAF170 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa BAF7 IgM\ subGroups view=Signal factor=BAF170 cellType=t2HELAS3 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsHelas3Baf170IggmusSig\ type bigWig 0.000000 7705.700195\ wgEncodeAwgTfbsHaibHepg2Foxa1sc101058V0416101UniPk HepG2 FOXA1 h narrowPeak HepG2 TFBS Uniform Peaks of FOXA1_(SC-101058) from ENCODE/HudsonAlpha/Analysis 1 383 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of FOXA1_(SC-101058) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 FOXA1 h\ subGroups tier=a20 cellType=a20HEPG2 factor=FOXA1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Foxa1sc101058V0416101UniPk\ encTfChipPkENCFF227PWE HepG2 HNF1A narrowPeak Transcription Factor ChIP-seq Peaks of HNF1A in HepG2 from ENCODE 3 (ENCFF227PWE) 1 383 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of HNF1A in HepG2 from ENCODE 3 (ENCFF227PWE)\ parent encTfChipPk off\ shortLabel HepG2 HNF1A\ subGroups cellType=HepG2 factor=HNF1A\ track encTfChipPkENCFF227PWE\ wgEncodeUwDnaseHnpcePkRep2V2 HNPCEpiC Pk 2 narrowPeak HNPCEpiC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 383 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HNPCEpiC DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HNPCEpiC Pk 2\ subGroups view=Peaks cellType=t3HNPCEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHnpcePkRep2V2\ type narrowPeak\ wgEncodeRikenCageHsavecCellPapTssHmm HSaV cell pA+ bed 6 HSaVEC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 383 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSaVEC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HSaV cell pA+\ subGroups view=TssHmm cellType=t3HSAVEC localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHsavecCellPapTssHmm\ type bed 6\ wgEncodeBroadHistoneHsmmCtcfStdPk HSMM CTCF broadPeak HSMM CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 383 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMM CTCF\ subGroups view=Peaks factor=CTCF cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmCtcfStdPk\ type broadPeak\ wgEncodeHaibTfbsK562Fosl1sc183V0416101PkRep1 K562 FOSL1 V101 1 broadPeak K562 FOSL1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 383 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 FOSL1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 FOSL1 V101 1\ subGroups view=Peaks factor=FOSL1SC183 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Fosl1sc183V0416101PkRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqMcf7CellLongnonpolyaMinusRawSigRep2 MCF7 cel pA- - 2 bigWig 1.000000 1895927.000000 MCF-7 whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 383 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel MCF7 cel pA- - 2\ subGroups view=MinusSignal cellType=t2MCF7 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqMcf7CellLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 1895927.000000\ wgEncodeCshlShortRnaSeqNhdf70717012CellShorttotalTapPlusRep1 NHDF cell TAP + 1 bigWig 1.000000 4306676.000000 NHDF TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 383 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHDF TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel NHDF cell TAP + 1\ subGroups view=PlusSignal cellType=t3NHDF localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqNhdf70717012CellShorttotalTapPlusRep1\ type bigWig 1.000000 4306676.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_ctss_fwd Tc:ARPE-19Emt_60hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_forward 0 383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep2.CNhs14542.13686-147F5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13686-147F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_tpm_fwd Tc:ARPE-19Emt_60hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_forward 1 383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep2.CNhs14542.13686-147F5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13686-147F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcfH3k4me3StdPkRep2 HCF H3K4M3 Pk 2 narrowPeak HCF H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 384 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCF H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HCF H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HCF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHcfH3k4me3StdPkRep2\ type narrowPeak\ wgEncodeSydhTfbsHelas3Bdp1StdPk HeLa BDP1 Std narrowPeak HeLa-S3 BDP1 Standard ChIP-seq Peaks from ENCODE/SYDH 3 384 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 BDP1 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa BDP1 Std\ subGroups view=Peaks factor=BDP1 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Bdp1StdPk\ type narrowPeak\ wgEncodeAwgTfbsHaibHepg2Foxa1sc6553V0416101UniPk HepG2 FOXA1 h2 narrowPeak HepG2 TFBS Uniform Peaks of FOXA1_(SC-6553) from ENCODE/HudsonAlpha/Analysis 1 384 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of FOXA1_(SC-6553) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 FOXA1 h2\ subGroups tier=a20 cellType=a20HEPG2 factor=FOXA1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Foxa1sc6553V0416101UniPk\ encTfChipPkENCFF884JKW HepG2 HNF4A narrowPeak Transcription Factor ChIP-seq Peaks of HNF4A in HepG2 from ENCODE 3 (ENCFF884JKW) 1 384 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of HNF4A in HepG2 from ENCODE 3 (ENCFF884JKW)\ parent encTfChipPk off\ shortLabel HepG2 HNF4A\ subGroups cellType=HepG2 factor=HNF4A\ track encTfChipPkENCFF884JKW\ wgEncodeUwDnaseHnpceRawRep2 HNPCEpiC Sg 2 bigWig 1.000000 47149.000000 HNPCEpiC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 384 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HNPCEpiC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HNPCEpiC Sg 2\ subGroups view=zRSig cellType=t3HNPCEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHnpceRawRep2\ type bigWig 1.000000 47149.000000\ wgEncodeRikenCageHsavecCellPapPlusRawRep1 HSaV cell pA+ + 1 bigWig 1.000000 327488.000000 HSaVEC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 384 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSaVEC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HSaV cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3HSAVEC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHsavecCellPapPlusRawRep1\ type bigWig 1.000000 327488.000000\ wgEncodeBroadHistoneHsmmCtcfStdSig HSMM CTCF bigWig 0.040000 10439.959961 HSMM CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 384 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMM CTCF\ subGroups view=Signal factor=CTCF cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmCtcfStdSig\ type bigWig 0.040000 10439.959961\ wgEncodeHaibTfbsK562Fosl1sc183V0416101RawRep1 K562 FOSL1 V101 1 bigWig 0.235398 123.112999 K562 FOSL1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 384 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 FOSL1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 FOSL1 V101 1\ subGroups view=RawSignal factor=FOSL1SC183 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Fosl1sc183V0416101RawRep1\ type bigWig 0.235398 123.112999\ wgEncodeCshlLongRnaSeqMcf7CellLongnonpolyaPlusRawSigRep1 MCF7 cel pA- + 1 bigWig 1.000000 4160686.000000 MCF-7 whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 384 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel MCF7 cel pA- + 1\ subGroups view=PlusSignal cellType=t2MCF7 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqMcf7CellLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 4160686.000000\ wgEncodeCshlShortRnaSeqNhdf00608013CellShorttotalTapPlusRep2 NHDF cell TAP + 2 bigWig 1.000000 3415368.000000 NHDF TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 384 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHDF TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel NHDF cell TAP + 2\ subGroups view=PlusSignal cellType=t3NHDF localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqNhdf00608013CellShorttotalTapPlusRep2\ type bigWig 1.000000 3415368.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_ctss_rev Tc:ARPE-19Emt_60hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_reverse 0 384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep2.CNhs14542.13686-147F5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13686-147F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_tpm_rev Tc:ARPE-19Emt_60hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_reverse 1 384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep2.CNhs14542.13686-147F5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13686-147F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcfH3k4me3StdRawRep2 HCF H3K4M3 Sg 2 bigWig 1.000000 8744.000000 HCF H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 385 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCF H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HCF H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HCF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHcfH3k4me3StdRawRep2\ type bigWig 1.000000 8744.000000\ wgEncodeSydhTfbsHelas3Bdp1StdSig HeLa BDP1 Std bigWig 0.000000 19361.199219 HeLa-S3 BDP1 Standard ChIP-seq Signal from ENCODE/SYDH 2 385 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 BDP1 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa BDP1 Std\ subGroups view=Signal factor=BDP1 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Bdp1StdSig\ type bigWig 0.000000 19361.199219\ wgEncodeAwgTfbsHaibHepg2Foxa2sc6554V0416101UniPk HepG2 FOXA2 narrowPeak HepG2 TFBS Uniform Peaks of FOXA2_(SC-6554) from ENCODE/HudsonAlpha/Analysis 1 385 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of FOXA2_(SC-6554) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 FOXA2\ subGroups tier=a20 cellType=a20HEPG2 factor=FOXA2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Foxa2sc6554V0416101UniPk\ encTfChipPkENCFF140ARE HepG2 HNF4G narrowPeak Transcription Factor ChIP-seq Peaks of HNF4G in HepG2 from ENCODE 3 (ENCFF140ARE) 1 385 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of HNF4G in HepG2 from ENCODE 3 (ENCFF140ARE)\ parent encTfChipPk off\ shortLabel HepG2 HNF4G\ subGroups cellType=HepG2 factor=HNF4G\ track encTfChipPkENCFF140ARE\ wgEncodeUwDnaseHpaecHotspotsRep1 HPAEC Ht 1 broadPeak HPAEC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 385 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAEC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HPAEC Ht 1\ subGroups view=Hot cellType=t3HPAEC rep=rep1 treatment=None\ track wgEncodeUwDnaseHpaecHotspotsRep1\ type broadPeak\ wgEncodeRikenCageHsavecCellPapPlusRawRep2 HSaV cell pA+ + 2 bigWig 1.000000 211316.000000 HSaVEC whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 385 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSaVEC whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HSaV cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3HSAVEC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHsavecCellPapPlusRawRep2\ type bigWig 1.000000 211316.000000\ wgEncodeBroadHistoneHsmmEzh239875Pk HSMM EZH2 broadPeak HSMM EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 385 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMM EZH2\ subGroups view=Peaks factor=EZH239875 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmEzh239875Pk\ type broadPeak\ wgEncodeHaibTfbsK562Fosl1sc183V0416101PkRep2 K562 FOSL1 V101 2 broadPeak K562 FOSL1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 385 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 FOSL1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 FOSL1 V101 2\ subGroups view=Peaks factor=FOSL1SC183 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Fosl1sc183V0416101PkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqMcf7CellLongnonpolyaPlusRawSigRep2 MCF7 cel pA- + 2 bigWig 1.000000 2795274.000000 MCF-7 whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 385 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel MCF7 cel pA- + 2\ subGroups view=PlusSignal cellType=t2MCF7 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqMcf7CellLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 2795274.000000\ wgEncodeCshlShortRnaSeqNhekCellShorttotalTapContigs NHEK cell TAP C bed 6 NHEK TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 385 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel NHEK cell TAP C\ subGroups view=Contigs cellType=t3NHEK localization=CELL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqNhekCellShorttotalTapContigs\ type bed 6\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_ctss_fwd Tc:ARPE-19Emt_60hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_forward 0 385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep3.CNhs14543.13687-147F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13687-147F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_tpm_fwd Tc:ARPE-19Emt_60hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_forward 1 385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep3.CNhs14543.13687-147F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13687-147F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcfInputStdRawRep1 HCF In Sg 1 bigWig 1.000000 19717.000000 HCF Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 386 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCF Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HCF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HCF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHcfInputStdRawRep1\ type bigWig 1.000000 19717.000000\ wgEncodeSydhTfbsHelas3Brca1a300IggrabPk HeLa BRC1 IgR narrowPeak HeLa-S3 BRCA1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 386 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 BRCA1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa BRC1 IgR\ subGroups view=Peaks factor=BRCA1A300 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Brca1a300IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsHaibHepg2GabpPcr2xUniPk HepG2 GABPA narrowPeak HepG2 TFBS Uniform Peaks of GABP from ENCODE/HudsonAlpha/Analysis 1 386 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of GABP from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 GABPA\ subGroups tier=a20 cellType=a20HEPG2 factor=GABPA lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2GabpPcr2xUniPk\ encTfChipPkENCFF937MYV HepG2 HNRNPH1 narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPH1 in HepG2 from ENCODE 3 (ENCFF937MYV) 1 386 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPH1 in HepG2 from ENCODE 3 (ENCFF937MYV)\ parent encTfChipPk off\ shortLabel HepG2 HNRNPH1\ subGroups cellType=HepG2 factor=HNRNPH1\ track encTfChipPkENCFF937MYV\ wgEncodeUwDnaseHpaecPkRep1 HPAEC Pk 1 narrowPeak HPAEC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 386 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAEC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HPAEC Pk 1\ subGroups view=Peaks cellType=t3HPAEC rep=rep1 treatment=None\ track wgEncodeUwDnaseHpaecPkRep1\ type narrowPeak\ wgEncodeRikenCageHsavecCellPapMinusRawRep1 HSaV cell pA+ - 1 bigWig 1.000000 313956.000000 HSaVEC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 386 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSaVEC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HSaV cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3HSAVEC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHsavecCellPapMinusRawRep1\ type bigWig 1.000000 313956.000000\ wgEncodeBroadHistoneHsmmEzh239875Sig HSMM EZH2 bigWig 0.040000 35642.199219 HSMM EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 386 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMM EZH2\ subGroups view=Signal factor=EZH239875 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmEzh239875Sig\ type bigWig 0.040000 35642.199219\ wgEncodeHaibTfbsK562Fosl1sc183V0416101RawRep2 K562 FOSL1 V101 2 bigWig 0.189531 237.341003 K562 FOSL1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 386 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 FOSL1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 FOSL1 V101 2\ subGroups view=RawSignal factor=FOSL1SC183 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Fosl1sc183V0416101RawRep2\ type bigWig 0.189531 237.341003\ wgEncodeCshlLongRnaSeqMcf7CellPapAlnRep1 MCF7 cel pA+ A 1 bam MCF-7 whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 386 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel MCF7 cel pA+ A 1\ subGroups view=Alignments cellType=t2MCF7 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqMcf7CellPapAlnRep1\ type bam\ wgEncodeCshlShortRnaSeqNhekCellShorttotalTapMinusRawRep1 NHEK cell TAP - 1 bigWig 1.000000 2150370.000000 NHEK TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 386 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel NHEK cell TAP - 1\ subGroups view=MinusSignal cellType=t3NHEK localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqNhekCellShorttotalTapMinusRawRep1\ type bigWig 1.000000 2150370.000000\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_ctss_rev Tc:ARPE-19Emt_60hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_reverse 0 386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep3.CNhs14543.13687-147F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13687-147F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_tpm_rev Tc:ARPE-19Emt_60hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_reverse 1 386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep3.CNhs14543.13687-147F6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13687-147F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcfaaH3k4me3StdHotspotsRep1 HCFa H3K4M3 Ht 1 broadPeak HCFaa H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 387 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCFaa H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HCFa H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HCFAA rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHcfaaH3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeSydhTfbsHelas3Brca1a300IggrabSig HeLa BRC1 IgR bigWig 1.000000 16340.000000 HeLa-S3 BRCA1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 387 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 BRCA1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa BRC1 IgR\ subGroups view=Signal factor=BRCA1A300 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Brca1a300IggrabSig\ type bigWig 1.000000 16340.000000\ encTfChipPkENCFF099BZU HepG2 HNRNPK narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPK in HepG2 from ENCODE 3 (ENCFF099BZU) 1 387 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPK in HepG2 from ENCODE 3 (ENCFF099BZU)\ parent encTfChipPk off\ shortLabel HepG2 HNRNPK\ subGroups cellType=HepG2 factor=HNRNPK\ track encTfChipPkENCFF099BZU\ wgEncodeAwgTfbsSydhHepg2Grp20ForsklnUniPk HepG2+forsk GRp20 narrowPeak HepG2 (forskolin) TFBS Uniform Peaks of GRp20 from ENCODE/Stanford/Analysis 1 387 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 (forskolin) TFBS Uniform Peaks of GRp20 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2+forsk GRp20\ subGroups tier=a20 cellType=a20HEPG2 factor=GRP20 lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Grp20ForsklnUniPk\ wgEncodeUwDnaseHpaecRawRep1 HPAEC Sg 1 bigWig 1.000000 21814.000000 HPAEC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 387 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPAEC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HPAEC Sg 1\ subGroups view=zRSig cellType=t3HPAEC rep=rep1 treatment=None\ track wgEncodeUwDnaseHpaecRawRep1\ type bigWig 1.000000 21814.000000\ wgEncodeRikenCageHsavecCellPapMinusRawRep2 HSaV cell pA+ - 2 bigWig 1.000000 193247.000000 HSaVEC whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 387 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSaVEC whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HSaV cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3HSAVEC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHsavecCellPapMinusRawRep2\ type bigWig 1.000000 193247.000000\ wgEncodeBroadHistoneHsmmH2azStdPk HSMM H2A.Z broadPeak HSMM H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 387 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMM H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH2azStdPk\ type broadPeak\ wgEncodeHaibTfbsK562GabpV0416101PkRep1 K562 GABP V101 1 broadPeak K562 GABP v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 387 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 GABP v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel K562 GABP V101 1\ subGroups view=Peaks factor=GABP cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562GabpV0416101PkRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqMcf7CellPapAlnRep2 MCF7 cel pA+ A 2 bam MCF-7 whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 387 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel MCF7 cel pA+ A 2\ subGroups view=Alignments cellType=t2MCF7 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqMcf7CellPapAlnRep2\ type bam\ wgEncodeCshlShortRnaSeqNhekCellShorttotalTapMinusRawRep2 NHEK cell TAP - 2 bigWig 1.000000 1465668.000000 NHEK TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 387 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel NHEK cell TAP - 2\ subGroups view=MinusSignal cellType=t3NHEK localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqNhekCellShorttotalTapMinusRawRep2\ type bigWig 1.000000 1465668.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_ctss_fwd Tc:iPStoNeuronDs_Day00R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_forward 0 387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep1.CNhs13830.13445-144F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13445-144F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_tpm_fwd Tc:iPStoNeuronDs_Day00R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_forward 1 387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep1.CNhs13830.13445-144F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13445-144F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcfaaH3k4me3StdPkRep1 HCFa H3K4M3 Pk 1 narrowPeak HCFaa H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 388 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCFaa H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HCFa H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HCFAA rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHcfaaH3k4me3StdPkRep1\ type narrowPeak\ wgEncodeSydhTfbsHelas3Brf1StdPk HeLa BRF1 Std narrowPeak HeLa-S3 BRF1 Standard ChIP-seq Peaks from ENCODE/SYDH 3 388 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 BRF1 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa BRF1 Std\ subGroups view=Peaks factor=BRF1 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Brf1StdPk\ type narrowPeak\ wgEncodeAwgTfbsHaibHepg2Hdac2sc6296V0416101UniPk HepG2 HDAC2 narrowPeak HepG2 TFBS Uniform Peaks of HDAC2_(SC-6296) from ENCODE/HudsonAlpha/Analysis 1 388 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of HDAC2_(SC-6296) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 HDAC2\ subGroups tier=a20 cellType=a20HEPG2 factor=HDAC2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Hdac2sc6296V0416101UniPk\ encTfChipPkENCFF233MID HepG2 HNRNPL narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPL in HepG2 from ENCODE 3 (ENCFF233MID) 1 388 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPL in HepG2 from ENCODE 3 (ENCFF233MID)\ parent encTfChipPk off\ shortLabel HepG2 HNRNPL\ subGroups cellType=HepG2 factor=HNRNPL\ track encTfChipPkENCFF233MID\ wgEncodeUwDnaseHpafHotspotsRep1 HPAF Ht 1 broadPeak HPAF DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 388 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAF DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HPAF Ht 1\ subGroups view=Hot cellType=t3HPAF rep=rep1 treatment=None\ track wgEncodeUwDnaseHpafHotspotsRep1\ type broadPeak\ wgEncodeRikenCageHsavecCellPapAlnRep1 HSaV cell pA+ A 1 bam HSaVEC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 388 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSaVEC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HSaV cell pA+ A 1\ subGroups view=Alignments cellType=t3HSAVEC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHsavecCellPapAlnRep1\ type bam\ wgEncodeBroadHistoneHsmmH2azStdSig HSMM H2A.Z bigWig 0.040000 9646.160156 HSMM H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 388 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMM H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH2azStdSig\ type bigWig 0.040000 9646.160156\ wgEncodeHaibTfbsK562GabpV0416101RawRep1 K562 GABP V101 1 bigWig 0.381929 112.000999 K562 GABP v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 388 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 GABP v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel K562 GABP V101 1\ subGroups view=RawSignal factor=GABP cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562GabpV0416101RawRep1\ type bigWig 0.381929 112.000999\ wgEncodeCshlLongRnaSeqMcf7CellPapContigs MCF7 cel pA+ C bed 6 + MCF-7 whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 388 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel MCF7 cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2MCF7 localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqMcf7CellPapContigs\ type bed 6 +\ wgEncodeCshlShortRnaSeqNhekCellShorttotalTapPlusRawRep1 NHEK cell TAP + 1 bigWig 1.000000 3814080.000000 NHEK TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 388 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel NHEK cell TAP + 1\ subGroups view=PlusSignal cellType=t3NHEK localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqNhekCellShorttotalTapPlusRawRep1\ type bigWig 1.000000 3814080.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_ctss_rev Tc:iPStoNeuronDs_Day00R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_reverse 0 388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep1.CNhs13830.13445-144F7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13445-144F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_tpm_rev Tc:iPStoNeuronDs_Day00R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_reverse 1 388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep1.CNhs13830.13445-144F7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13445-144F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcfaaH3k4me3StdRawRep1 HCFa H3K4M3 Sg 1 bigWig 1.000000 1905.000000 HCFaa H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 389 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCFaa H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HCFa H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HCFAA rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHcfaaH3k4me3StdRawRep1\ type bigWig 1.000000 1905.000000\ wgEncodeSydhTfbsHelas3Brf1StdSig HeLa BRF1 Std bigWig 0.000000 17811.699219 HeLa-S3 BRF1 Standard ChIP-seq Signal from ENCODE/SYDH 2 389 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 BRF1 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa BRF1 Std\ subGroups view=Signal factor=BRF1 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Brf1StdSig\ type bigWig 0.000000 17811.699219\ wgEncodeAwgTfbsHaibHepg2Hnf4asc8987V0416101UniPk HepG2 HNF4A narrowPeak HepG2 TFBS Uniform Peaks of HNF4A_(SC-8987) from ENCODE/HudsonAlpha/Analysis 1 389 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of HNF4A_(SC-8987) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 HNF4A\ subGroups tier=a20 cellType=a20HEPG2 factor=HNF4A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Hnf4asc8987V0416101UniPk\ encTfChipPkENCFF883CDF HepG2 HNRNPLL narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPLL in HepG2 from ENCODE 3 (ENCFF883CDF) 1 389 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPLL in HepG2 from ENCODE 3 (ENCFF883CDF)\ parent encTfChipPk off\ shortLabel HepG2 HNRNPLL\ subGroups cellType=HepG2 factor=HNRNPLL\ track encTfChipPkENCFF883CDF\ wgEncodeUwDnaseHpafPkRep1 HPAF Pk 1 narrowPeak HPAF DNaseI HS Peaks Rep 1 from ENCODE/UW 1 389 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAF DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HPAF Pk 1\ subGroups view=Peaks cellType=t3HPAF rep=rep1 treatment=None\ track wgEncodeUwDnaseHpafPkRep1\ type narrowPeak\ wgEncodeRikenCageHsavecCellPapAlnRep2 HSaV cell pA+ A 2 bam HSaVEC whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 389 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSaVEC whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HSaV cell pA+ A 2\ subGroups view=Alignments cellType=t3HSAVEC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHsavecCellPapAlnRep2\ type bam\ wgEncodeBroadHistoneHsmmH3k4me1StdPk HSMM H3K4m1 broadPeak HSMM H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 389 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMM H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k4me1StdPk\ type broadPeak\ wgEncodeHaibTfbsK562GabpV0416101PkRep2 K562 GABP V101 2 broadPeak K562 GABP v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 389 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 GABP v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel K562 GABP V101 2\ subGroups view=Peaks factor=GABP cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562GabpV0416101PkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqMcf7CellPapJunctions MCF7 cel pA+ J bed 6 + MCF-7 whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 389 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel MCF7 cel pA+ J\ subGroups view=Junctions cellType=t2MCF7 localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqMcf7CellPapJunctions\ type bed 6 +\ wgEncodeCshlShortRnaSeqNhekCellShorttotalTapPlusRawRep2 NHEK cell TAP + 2 bigWig 1.000000 2170371.000000 NHEK TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 389 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel NHEK cell TAP + 2\ subGroups view=PlusSignal cellType=t3NHEK localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqNhekCellShorttotalTapPlusRawRep2\ type bigWig 1.000000 2170371.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_ctss_fwd Tc:iPStoNeuronDs_Day00R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_forward 0 389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep2.CNhs13843.13449-144G2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13449-144G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_tpm_fwd Tc:iPStoNeuronDs_Day00R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_forward 1 389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep2.CNhs13843.13449-144G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13449-144G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcfaaInputStdRawRep1 HCFa In Sg 1 bigWig 1.000000 16198.000000 HCFaa Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 390 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCFaa Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HCFa In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HCFAA rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHcfaaInputStdRawRep1\ type bigWig 1.000000 16198.000000\ wgEncodeSydhTfbsHelas3Brf2StdPk HeLa BRF2 Std narrowPeak HeLa-S3 BRF2 Standard ChIP-seq Peaks from ENCODE/SYDH 3 390 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 BRF2 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa BRF2 Std\ subGroups view=Peaks factor=BRF2 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Brf2StdPk\ type narrowPeak\ encTfChipPkENCFF560CMG HepG2 HNRNPUL1 narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPUL1 in HepG2 from ENCODE 3 (ENCFF560CMG) 1 390 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPUL1 in HepG2 from ENCODE 3 (ENCFF560CMG)\ parent encTfChipPk off\ shortLabel HepG2 HNRNPUL1\ subGroups cellType=HepG2 factor=HNRNPUL1\ track encTfChipPkENCFF560CMG\ wgEncodeAwgTfbsSydhHepg2Hnf4aForsklnUniPk HepG2+forsk HNF4A narrowPeak HepG2 (forskolin) TFBS Uniform Peaks of HNF4A from ENCODE/Stanford/Analysis 1 390 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 (forskolin) TFBS Uniform Peaks of HNF4A from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2+forsk HNF4A\ subGroups tier=a20 cellType=a20HEPG2 factor=HNF4A lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Hnf4aForsklnUniPk\ wgEncodeUwDnaseHpafRawRep1 HPAF Sg 1 bigWig 1.000000 41132.000000 HPAF DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 390 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPAF DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HPAF Sg 1\ subGroups view=zRSig cellType=t3HPAF rep=rep1 treatment=None\ track wgEncodeUwDnaseHpafRawRep1\ type bigWig 1.000000 41132.000000\ wgEncodeBroadHistoneHsmmH3k4me1StdSig HSMM H3K4m1 bigWig 0.040000 9619.360352 HSMM H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 390 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMM H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k4me1StdSig\ type bigWig 0.040000 9619.360352\ wgEncodeRikenCageHvmfCellPapTssHmm HVMF cell pA+ bed 6 HVMF whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 390 0 0 0 127 127 127 0 0 0 expression 1 longLabel HVMF whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HVMF cell pA+\ subGroups view=TssHmm cellType=t3HVMF localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHvmfCellPapTssHmm\ type bed 6\ wgEncodeHaibTfbsK562GabpV0416101RawRep2 K562 GABP V101 2 bigWig 0.228410 342.500000 K562 GABP v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 390 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 GABP v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel K562 GABP V101 2\ subGroups view=RawSignal factor=GABP cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562GabpV0416101RawRep2\ type bigWig 0.228410 342.500000\ wgEncodeCshlLongRnaSeqMcf7CellPapMinusRawSigRep1 MCF7 cel pA+ - 1 bigWig 1.000000 327906.000000 MCF-7 whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 390 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel MCF7 cel pA+ - 1\ subGroups view=MinusSignal cellType=t2MCF7 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqMcf7CellPapMinusRawSigRep1\ type bigWig 1.000000 327906.000000\ wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapContigs NHEK cyto TAP C bed 6 NHEK TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL 2 390 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK TAP-only cytosol small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel NHEK cyto TAP C\ subGroups view=Contigs cellType=t3NHEK localization=CYTOSOL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapContigs\ type bed 6\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_ctss_rev Tc:iPStoNeuronDs_Day00R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_reverse 0 390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep2.CNhs13843.13449-144G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13449-144G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_tpm_rev Tc:iPStoNeuronDs_Day00R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_reverse 1 390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep2.CNhs13843.13449-144G2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13449-144G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcmH3k4me3StdHotspotsRep1 HCM H3K4M3 Ht 1 broadPeak HCM H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 391 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HCM H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HCM rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHcmH3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeSydhTfbsHelas3Brf2StdSig HeLa BRF2 Std bigWig 0.000000 21235.000000 HeLa-S3 BRF2 Standard ChIP-seq Signal from ENCODE/SYDH 2 391 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 BRF2 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa BRF2 Std\ subGroups view=Signal factor=BRF2 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Brf2StdSig\ type bigWig 0.000000 21235.000000\ wgEncodeAwgTfbsHaibHepg2Hnf4gsc6558V0416101UniPk HepG2 HNF4G narrowPeak HepG2 TFBS Uniform Peaks of HNF4G_(SC-6558) from ENCODE/HudsonAlpha/Analysis 1 391 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of HNF4G_(SC-6558) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 HNF4G\ subGroups tier=a20 cellType=a20HEPG2 factor=HNF4G lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Hnf4gsc6558V0416101UniPk\ encTfChipPkENCFF880SXP HepG2 IKZF1 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in HepG2 from ENCODE 3 (ENCFF880SXP) 1 391 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in HepG2 from ENCODE 3 (ENCFF880SXP)\ parent encTfChipPk off\ shortLabel HepG2 IKZF1\ subGroups cellType=HepG2 factor=IKZF1\ track encTfChipPkENCFF880SXP\ wgEncodeUwDnaseHpafHotspotsRep2 HPAF Ht 2 broadPeak HPAF DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 391 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAF DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HPAF Ht 2\ subGroups view=Hot cellType=t3HPAF rep=rep2 treatment=None\ track wgEncodeUwDnaseHpafHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneHsmmH3k4me2StdPk HSMM H3K4m2 broadPeak HSMM H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 391 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMM H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k4me2StdPk\ type broadPeak\ wgEncodeRikenCageHvmfCellPapPlusRawRep1 HVMF cell pA+ + 1 bigWig 1.000000 306733.000000 HVMF whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 391 0 0 0 127 127 127 0 0 0 expression 0 longLabel HVMF whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HVMF cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3HVMF localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHvmfCellPapPlusRawRep1\ type bigWig 1.000000 306733.000000\ wgEncodeHaibTfbsK562Gata2sc267Pcr1xPkRep1 K562 GATA2 PCR1 1 broadPeak K562 GATA2 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 391 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 GATA2 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 GATA2 PCR1 1\ subGroups view=Peaks factor=GATA2SC267 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Gata2sc267Pcr1xPkRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqMcf7CellPapMinusRawSigRep2 MCF7 cel pA+ - 2 bigWig 1.000000 1025114.000000 MCF-7 whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 391 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel MCF7 cel pA+ - 2\ subGroups view=MinusSignal cellType=t2MCF7 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqMcf7CellPapMinusRawSigRep2\ type bigWig 1.000000 1025114.000000\ wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapMinusRawRep3 NHEK cyto TAP - 1 bigWig 1.000000 3782447.000000 NHEK TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 391 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK TAP-only cytosol small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel NHEK cyto TAP - 1\ subGroups view=MinusSignal cellType=t3NHEK localization=CYTOSOL protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapMinusRawRep3\ type bigWig 1.000000 3782447.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_ctss_fwd Tc:iPStoNeuronDs_Day00R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_forward 0 391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep3.CNhs14056.13453-144G6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13453-144G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_tpm_fwd Tc:iPStoNeuronDs_Day00R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_forward 1 391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep3.CNhs14056.13453-144G6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13453-144G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcmH3k4me3StdPkRep1 HCM H3K4M3 Pk 1 narrowPeak HCM H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 392 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HCM H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HCM rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHcmH3k4me3StdPkRep1\ type narrowPeak\ wgEncodeSydhTfbsHelas3Brg1IggmusPk HeLa BRG1 IgM narrowPeak HeLa-S3 BRG1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 392 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 BRG1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa BRG1 IgM\ subGroups view=Peaks factor=BRG1 cellType=t2HELAS3 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsHelas3Brg1IggmusPk\ type narrowPeak\ encTfChipPkENCFF085GOJ HepG2 JUND 1 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in HepG2 from ENCODE 3 (ENCFF085GOJ) 1 392 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of JUND in HepG2 from ENCODE 3 (ENCFF085GOJ)\ parent encTfChipPk off\ shortLabel HepG2 JUND 1\ subGroups cellType=HepG2 factor=JUND\ track encTfChipPkENCFF085GOJ\ wgEncodeAwgTfbsSydhHepg2Hsf1ForsklnUniPk HepG2+forsk HSF1 narrowPeak HepG2 (forskolin) TFBS Uniform Peaks of HSF1 from ENCODE/Stanford/Analysis 1 392 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 (forskolin) TFBS Uniform Peaks of HSF1 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2+forsk HSF1\ subGroups tier=a20 cellType=a20HEPG2 factor=HSF1 lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Hsf1ForsklnUniPk\ wgEncodeUwDnaseHpafPkRep2 HPAF Pk 2 narrowPeak HPAF DNaseI HS Peaks Rep 2 from ENCODE/UW 1 392 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAF DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HPAF Pk 2\ subGroups view=Peaks cellType=t3HPAF rep=rep2 treatment=None\ track wgEncodeUwDnaseHpafPkRep2\ type narrowPeak\ wgEncodeBroadHistoneHsmmH3k4me2StdSig HSMM H3K4m2 bigWig 0.040000 10200.320312 HSMM H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 392 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMM H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k4me2StdSig\ type bigWig 0.040000 10200.320312\ wgEncodeRikenCageHvmfCellPapPlusRawRep2 HVMF cell pA+ + 2 bigWig 1.000000 403417.000000 HVMF whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 392 0 0 0 127 127 127 0 0 0 expression 0 longLabel HVMF whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HVMF cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3HVMF localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHvmfCellPapPlusRawRep2\ type bigWig 1.000000 403417.000000\ wgEncodeHaibTfbsK562Gata2sc267Pcr1xRawRep1 K562 GATA2 PCR1 1 bigWig 0.118607 86.167999 K562 GATA2 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 392 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 GATA2 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 GATA2 PCR1 1\ subGroups view=RawSignal factor=GATA2SC267 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Gata2sc267Pcr1xRawRep1\ type bigWig 0.118607 86.167999\ wgEncodeCshlLongRnaSeqMcf7CellPapPlusRawSigRep1 MCF7 cel pA+ + 1 bigWig 1.000000 1250592.000000 MCF-7 whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 392 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel MCF7 cel pA+ + 1\ subGroups view=PlusSignal cellType=t2MCF7 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqMcf7CellPapPlusRawSigRep1\ type bigWig 1.000000 1250592.000000\ wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapMinusRawRep4 NHEK cyto TAP - 2 bigWig 1.000000 2890950.000000 NHEK TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 392 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK TAP-only cytosol small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel NHEK cyto TAP - 2\ subGroups view=MinusSignal cellType=t3NHEK localization=CYTOSOL protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapMinusRawRep4\ type bigWig 1.000000 2890950.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_ctss_rev Tc:iPStoNeuronDs_Day00R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_reverse 0 392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep3.CNhs14056.13453-144G6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13453-144G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_tpm_rev Tc:iPStoNeuronDs_Day00R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_reverse 1 392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep3.CNhs14056.13453-144G6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13453-144G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcmH3k4me3StdRawRep1 HCM H3K4M3 Sg 1 bigWig 1.000000 1509.000000 HCM H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 393 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCM H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HCM H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HCM rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHcmH3k4me3StdRawRep1\ type bigWig 1.000000 1509.000000\ wgEncodeSydhTfbsHelas3Brg1IggmusSig HeLa BRG1 IgM bigWig 0.000000 6834.700195 HeLa-S3 BRG1 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 393 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 BRG1 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa BRG1 IgM\ subGroups view=Signal factor=BRG1 cellType=t2HELAS3 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsHelas3Brg1IggmusSig\ type bigWig 0.000000 6834.700195\ wgEncodeAwgTfbsSydhHepg2Irf3IggrabUniPk HepG2 IRF3 narrowPeak HepG2 TFBS Uniform Peaks of IRF3 from ENCODE/Stanford/Analysis 1 393 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of IRF3 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 IRF3\ subGroups tier=a20 cellType=a20HEPG2 factor=IRF3 lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Irf3IggrabUniPk\ encTfChipPkENCFF721HUX HepG2 JUND 2 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in HepG2 from ENCODE 3 (ENCFF721HUX) 1 393 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of JUND in HepG2 from ENCODE 3 (ENCFF721HUX)\ parent encTfChipPk off\ shortLabel HepG2 JUND 2\ subGroups cellType=HepG2 factor=JUND\ track encTfChipPkENCFF721HUX\ wgEncodeUwDnaseHpafRawRep2 HPAF Sg 2 bigWig 1.000000 23516.000000 HPAF DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 393 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPAF DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HPAF Sg 2\ subGroups view=zRSig cellType=t3HPAF rep=rep2 treatment=None\ track wgEncodeUwDnaseHpafRawRep2\ type bigWig 1.000000 23516.000000\ wgEncodeBroadHistoneHsmmH3k4me3StdPk HSMM H3K4m3 broadPeak HSMM H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 393 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMM H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k4me3StdPk\ type broadPeak\ wgEncodeRikenCageHvmfCellPapMinusRawRep1 HVMF cell pA+ - 1 bigWig 1.000000 677894.000000 HVMF whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 393 0 0 0 127 127 127 0 0 0 expression 0 longLabel HVMF whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HVMF cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3HVMF localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHvmfCellPapMinusRawRep1\ type bigWig 1.000000 677894.000000\ wgEncodeHaibTfbsK562Gata2sc267Pcr1xPkRep2 K562 GATA2 PCR1 2 broadPeak K562 GATA2 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 393 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 GATA2 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 GATA2 PCR1 2\ subGroups view=Peaks factor=GATA2SC267 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Gata2sc267Pcr1xPkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqMcf7CellPapPlusRawSigRep2 MCF7 cel pA+ + 2 bigWig 1.000000 467541.000000 MCF-7 whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 393 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel MCF7 cel pA+ + 2\ subGroups view=PlusSignal cellType=t2MCF7 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqMcf7CellPapPlusRawSigRep2\ type bigWig 1.000000 467541.000000\ wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapPlusRawRep3 NHEK cyto TAP + 1 bigWig 1.000000 3745979.000000 NHEK TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 393 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK TAP-only cytosol small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel NHEK cyto TAP + 1\ subGroups view=PlusSignal cellType=t3NHEK localization=CYTOSOL protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapPlusRawRep3\ type bigWig 1.000000 3745979.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_ctss_fwd Tc:iPStoNeuronDs_Day06R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_forward 0 393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep1.CNhs13831.13446-144F8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13446-144F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_tpm_fwd Tc:iPStoNeuronDs_Day06R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_forward 1 393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep1.CNhs13831.13446-144F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13446-144F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcmH3k4me3StdHotspotsRep2 HCM H3K4M3 Ht 2 broadPeak HCM H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 394 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HCM H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HCM rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHcmH3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeSydhTfbsHelas3CebpbIggrabPk HeLa CBPB IgR narrowPeak HeLa-S3 CEBPB IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 394 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 CEBPB IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa CBPB IgR\ subGroups view=Peaks factor=CEBPB cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3CebpbIggrabPk\ type narrowPeak\ wgEncodeAwgTfbsSydhHepg2CjunIggrabUniPk HepG2 JUN narrowPeak HepG2 TFBS Uniform Peaks of c-Jun from ENCODE/Stanford/Analysis 1 394 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of c-Jun from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 JUN\ subGroups tier=a20 cellType=a20HEPG2 factor=JUN lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2CjunIggrabUniPk\ encTfChipPkENCFF405GHU HepG2 KAT2B narrowPeak Transcription Factor ChIP-seq Peaks of KAT2B in HepG2 from ENCODE 3 (ENCFF405GHU) 1 394 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of KAT2B in HepG2 from ENCODE 3 (ENCFF405GHU)\ parent encTfChipPk off\ shortLabel HepG2 KAT2B\ subGroups cellType=HepG2 factor=KAT2B\ track encTfChipPkENCFF405GHU\ wgEncodeUwDnaseHpdlfHotspotsRep1 HPdLF Ht 1 broadPeak HPdLF DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 394 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPdLF DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HPdLF Ht 1\ subGroups view=Hot cellType=t3HPDLF rep=rep1 treatment=None\ track wgEncodeUwDnaseHpdlfHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHsmmH3k4me3StdSig HSMM H3K4m3 bigWig 0.040000 37810.921875 HSMM H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 394 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMM H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k4me3StdSig\ type bigWig 0.040000 37810.921875\ wgEncodeRikenCageHvmfCellPapMinusRawRep2 HVMF cell pA+ - 2 bigWig 1.000000 721790.000000 HVMF whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 394 0 0 0 127 127 127 0 0 0 expression 0 longLabel HVMF whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HVMF cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3HVMF localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHvmfCellPapMinusRawRep2\ type bigWig 1.000000 721790.000000\ wgEncodeHaibTfbsK562Gata2sc267Pcr1xRawRep2 K562 GATA2 PCR1 2 bigWig 0.189153 220.173996 K562 GATA2 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 394 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 GATA2 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 GATA2 PCR1 2\ subGroups view=RawSignal factor=GATA2SC267 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Gata2sc267Pcr1xRawRep2\ type bigWig 0.189153 220.173996\ wgEncodeCshlLongRnaSeqMcf7CytosolPapAlnRep3 MCF7 cyt pA+ A 1 bam MCF-7 cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 394 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel MCF7 cyt pA+ A 1\ subGroups view=Alignments cellType=t2MCF7 localization=CYTOSOL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqMcf7CytosolPapAlnRep3\ type bam\ wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapPlusRawRep4 NHEK cyto TAP + 2 bigWig 1.000000 4016030.000000 NHEK TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 394 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK TAP-only cytosol small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel NHEK cyto TAP + 2\ subGroups view=PlusSignal cellType=t3NHEK localization=CYTOSOL protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapPlusRawRep4\ type bigWig 1.000000 4016030.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_ctss_rev Tc:iPStoNeuronDs_Day06R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_reverse 0 394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep1.CNhs13831.13446-144F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13446-144F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_tpm_rev Tc:iPStoNeuronDs_Day06R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_reverse 1 394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep1.CNhs13831.13446-144F8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13446-144F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcmH3k4me3StdPkRep2 HCM H3K4M3 Pk 2 narrowPeak HCM H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 395 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HCM H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HCM rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHcmH3k4me3StdPkRep2\ type narrowPeak\ wgEncodeSydhTfbsHelas3CebpbIggrabSig HeLa CBPB IgR bigWig 1.000000 15688.000000 HeLa-S3 CEBPB IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 395 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 CEBPB IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa CBPB IgR\ subGroups view=Signal factor=CEBPB cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3CebpbIggrabSig\ type bigWig 1.000000 15688.000000\ wgEncodeAwgTfbsHaibHepg2JundPcr1xUniPk HepG2 JUND h narrowPeak HepG2 TFBS Uniform Peaks of JunD from ENCODE/HudsonAlpha/Analysis 1 395 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of JunD from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 JUND h\ subGroups tier=a20 cellType=a20HEPG2 factor=JUND lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2JundPcr1xUniPk\ encTfChipPkENCFF613LYW HepG2 KDM1A narrowPeak Transcription Factor ChIP-seq Peaks of KDM1A in HepG2 from ENCODE 3 (ENCFF613LYW) 1 395 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of KDM1A in HepG2 from ENCODE 3 (ENCFF613LYW)\ parent encTfChipPk off\ shortLabel HepG2 KDM1A\ subGroups cellType=HepG2 factor=KDM1A\ track encTfChipPkENCFF613LYW\ wgEncodeUwDnaseHpdlfPkRep1 HPdLF Pk 1 narrowPeak HPdLF DNaseI HS Peaks Rep 1 from ENCODE/UW 1 395 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPdLF DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HPdLF Pk 1\ subGroups view=Peaks cellType=t3HPDLF rep=rep1 treatment=None\ track wgEncodeUwDnaseHpdlfPkRep1\ type narrowPeak\ wgEncodeBroadHistoneHsmmH3k9acStdPk HSMM H3K9ac broadPeak HSMM H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 395 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMM H3K9ac\ subGroups view=Peaks factor=H3K09AC cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k9acStdPk\ type broadPeak\ wgEncodeRikenCageHvmfCellPapAlnRep1 HVMF cell pA+ A 1 bam HVMF whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 395 0 0 0 127 127 127 0 0 0 expression 1 longLabel HVMF whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HVMF cell pA+ A 1\ subGroups view=Alignments cellType=t3HVMF localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHvmfCellPapAlnRep1\ type bam\ wgEncodeHaibTfbsK562Hdac2sc6296V0416102PkRep1 K562 HDAC2 V102 1 broadPeak K562 HDAC2 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 395 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 HDAC2 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 HDAC2 V102 1\ subGroups view=Peaks factor=HDAC2SC6296 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Hdac2sc6296V0416102PkRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqMcf7CytosolPapAlnRep4 MCF7 cyt pA+ A 2 bam MCF-7 cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 395 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel MCF7 cyt pA+ A 2\ subGroups view=Alignments cellType=t2MCF7 localization=CYTOSOL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqMcf7CytosolPapAlnRep4\ type bam\ wgEncodeCshlShortRnaSeqNhekNucleusTapContigs NHEK nucl TAP C bed 6 NHEK TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL 2 395 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK TAP-only nucleus small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel NHEK nucl TAP C\ subGroups view=Contigs rep=Pooled cellType=t3NHEK localization=NUCLEUS protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqNhekNucleusTapContigs\ type bed 6\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_ctss_fwd Tc:iPStoNeuronDs_Day06R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_forward 0 395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep2.CNhs13844.13450-144G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13450-144G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_tpm_fwd Tc:iPStoNeuronDs_Day06R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_forward 1 395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep2.CNhs13844.13450-144G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13450-144G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcmH3k4me3StdRawRep2 HCM H3K4M3 Sg 2 bigWig 1.000000 2482.000000 HCM H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 396 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCM H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HCM H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HCM rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHcmH3k4me3StdRawRep2\ type bigWig 1.000000 2482.000000\ wgEncodeSydhTfbsHelas3CfosStdPk HeLa cFOS Std narrowPeak HeLa-S3 c-FOS Standard ChIP-seq Peaks from ENCODE/SYDH 3 396 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 c-FOS Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa cFOS Std\ subGroups view=Peaks factor=CFOS cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3CfosStdPk\ type narrowPeak\ wgEncodeAwgTfbsSydhHepg2JundIggrabUniPk HepG2 JUND s narrowPeak HepG2 TFBS Uniform Peaks of JunD from ENCODE/Stanford/Analysis 1 396 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of JunD from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 JUND s\ subGroups tier=a20 cellType=a20HEPG2 factor=JUND lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2JundIggrabUniPk\ encTfChipPkENCFF880BTU HepG2 KDM5A narrowPeak Transcription Factor ChIP-seq Peaks of KDM5A in HepG2 from ENCODE 3 (ENCFF880BTU) 1 396 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of KDM5A in HepG2 from ENCODE 3 (ENCFF880BTU)\ parent encTfChipPk off\ shortLabel HepG2 KDM5A\ subGroups cellType=HepG2 factor=KDM5A\ track encTfChipPkENCFF880BTU\ wgEncodeUwDnaseHpdlfRawRep1 HPdLF Sg 1 bigWig 1.000000 24867.000000 HPdLF DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 396 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPdLF DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HPdLF Sg 1\ subGroups view=zRSig cellType=t3HPDLF rep=rep1 treatment=None\ track wgEncodeUwDnaseHpdlfRawRep1\ type bigWig 1.000000 24867.000000\ wgEncodeBroadHistoneHsmmH3k9acStdSig HSMM H3K9ac bigWig 0.040000 7519.040039 HSMM H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 396 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMM H3K9ac\ subGroups view=Signal factor=H3K09AC cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k9acStdSig\ type bigWig 0.040000 7519.040039\ wgEncodeRikenCageHvmfCellPapAlnRep2 HVMF cell pA+ A 2 bam HVMF whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 396 0 0 0 127 127 127 0 0 0 expression 1 longLabel HVMF whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HVMF cell pA+ A 2\ subGroups view=Alignments cellType=t3HVMF localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHvmfCellPapAlnRep2\ type bam\ wgEncodeHaibTfbsK562Hdac2sc6296V0416102RawRep1 K562 HDAC2 V102 1 bigWig 0.368010 175.541000 K562 HDAC2 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 396 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 HDAC2 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 HDAC2 V102 1\ subGroups view=RawSignal factor=HDAC2SC6296 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Hdac2sc6296V0416102RawRep1\ type bigWig 0.368010 175.541000\ wgEncodeCshlLongRnaSeqMcf7CytosolPapContigs MCF7 cyt pA+ C bed 6 + MCF-7 cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 396 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel MCF7 cyt pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2MCF7 localization=CYTOSOL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqMcf7CytosolPapContigs\ type bed 6 +\ wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapMinusRawRep3 NHEK nucl TAP - 1 bigWig 1.000000 4703154.000000 NHEK TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 396 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK TAP-only nucleus small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel NHEK nucl TAP - 1\ subGroups view=MinusSignal cellType=t3NHEK localization=NUCLEUS protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapMinusRawRep3\ type bigWig 1.000000 4703154.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_ctss_rev Tc:iPStoNeuronDs_Day06R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_reverse 0 396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep2.CNhs13844.13450-144G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13450-144G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_tpm_rev Tc:iPStoNeuronDs_Day06R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_reverse 1 396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep2.CNhs13844.13450-144G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13450-144G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcmInputStdRawRep1 HCM In Sg 1 bigWig 1.000000 18082.000000 HCM Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 397 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCM Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HCM In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HCM rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHcmInputStdRawRep1\ type bigWig 1.000000 18082.000000\ wgEncodeSydhTfbsHelas3CfosStdSig HeLa cFOS Std bigWig 0.000000 6979.799805 HeLa-S3 c-FOS Standard ChIP-seq Signal from ENCODE/SYDH 2 397 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 c-FOS Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa cFOS Std\ subGroups view=Signal factor=CFOS cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3CfosStdSig\ type bigWig 0.000000 6979.799805\ encTfChipPkENCFF308BSD HepG2 LCORL narrowPeak Transcription Factor ChIP-seq Peaks of LCORL in HepG2 from ENCODE 3 (ENCFF308BSD) 1 397 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of LCORL in HepG2 from ENCODE 3 (ENCFF308BSD)\ parent encTfChipPk off\ shortLabel HepG2 LCORL\ subGroups cellType=HepG2 factor=LCORL\ track encTfChipPkENCFF308BSD\ wgEncodeAwgTfbsSydhHepg2Maffm8194IggrabUniPk HepG2 MAFF narrowPeak HepG2 TFBS Uniform Peaks of MafF_(M8194) from ENCODE/Stanford/Analysis 1 397 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of MafF_(M8194) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 MAFF\ subGroups tier=a20 cellType=a20HEPG2 factor=MAFF lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Maffm8194IggrabUniPk\ wgEncodeUwDnaseHpdlfHotspotsRep2 HPdLF Ht 2 broadPeak HPdLF DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 397 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPdLF DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HPdLF Ht 2\ subGroups view=Hot cellType=t3HPDLF rep=rep2 treatment=None\ track wgEncodeUwDnaseHpdlfHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneHsmmH3k9me3StdPk HSMM H3K9m3 broadPeak HSMM H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 397 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMM H3K9m3\ subGroups view=Peaks factor=H3K09ME3 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k9me3StdPk\ type broadPeak\ wgEncodeRikenCageHwpCellPapTssHmm HWP cell pA+ bed 6 HWP whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 397 0 0 0 127 127 127 0 0 0 expression 1 longLabel HWP whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel HWP cell pA+\ subGroups view=TssHmm cellType=t3HWP localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageHwpCellPapTssHmm\ type bed 6\ wgEncodeHaibTfbsK562Hdac2sc6296V0416102PkRep2 K562 HDAC2 V102 2 broadPeak K562 HDAC2 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 397 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 HDAC2 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 HDAC2 V102 2\ subGroups view=Peaks factor=HDAC2SC6296 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Hdac2sc6296V0416102PkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqMcf7CytosolPapJunctions MCF7 cyt pA+ J bed 6 + MCF-7 cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 397 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel MCF7 cyt pA+ J\ subGroups view=Junctions cellType=t2MCF7 localization=CYTOSOL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqMcf7CytosolPapJunctions\ type bed 6 +\ wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapMinusRawRep4 NHEK nucl TAP - 2 bigWig 1.000000 8210747.000000 NHEK TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 397 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK TAP-only nucleus small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel NHEK nucl TAP - 2\ subGroups view=MinusSignal cellType=t3NHEK localization=NUCLEUS protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapMinusRawRep4\ type bigWig 1.000000 8210747.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_ctss_fwd Tc:iPStoNeuronDs_Day06R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_forward 0 397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep3.CNhs14057.13454-144G7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13454-144G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_tpm_fwd Tc:iPStoNeuronDs_Day06R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_forward 1 397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep3.CNhs14057.13454-144G7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13454-144G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcpeH3k4me3StdHotspotsRep1 HCPE H3K4M3 Ht 1 broadPeak HCPEpiC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 398 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpiC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HCPE H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HCPEPIC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHcpeH3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeSydhTfbsHelas3Chd2IggrabPk HeLa CHD2 IgR narrowPeak HeLa-S3 CHD2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 398 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 CHD2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa CHD2 IgR\ subGroups view=Peaks factor=CHD2 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Chd2IggrabPk\ type narrowPeak\ encTfChipPkENCFF684ASX HepG2 MAFF narrowPeak Transcription Factor ChIP-seq Peaks of MAFF in HepG2 from ENCODE 3 (ENCFF684ASX) 1 398 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of MAFF in HepG2 from ENCODE 3 (ENCFF684ASX)\ parent encTfChipPk off\ shortLabel HepG2 MAFF\ subGroups cellType=HepG2 factor=MAFF\ track encTfChipPkENCFF684ASX\ wgEncodeAwgTfbsSydhHepg2Mafkab50322IggrabUniPk HepG2 MAFK s narrowPeak HepG2 TFBS Uniform Peaks of MafK_(ab50322) from ENCODE/Stanford/Analysis 1 398 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of MafK_(ab50322) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 MAFK s\ subGroups tier=a20 cellType=a20HEPG2 factor=MAFK lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Mafkab50322IggrabUniPk\ wgEncodeUwDnaseHpdlfPkRep2 HPdLF Pk 2 narrowPeak HPdLF DNaseI HS Peaks Rep 2 from ENCODE/UW 1 398 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPdLF DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HPdLF Pk 2\ subGroups view=Peaks cellType=t3HPDLF rep=rep2 treatment=None\ track wgEncodeUwDnaseHpdlfPkRep2\ type narrowPeak\ wgEncodeBroadHistoneHsmmH3k9me3StdSig HSMM H3K9m3 bigWig 0.040000 53900.359375 HSMM H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 398 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMM H3K9m3\ subGroups view=Signal factor=H3K09ME3 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k9me3StdSig\ type bigWig 0.040000 53900.359375\ wgEncodeRikenCageHwpCellPapPlusRawRep1 HWP cell pA+ + 1 bigWig 1.000000 1109870.000000 HWP whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 398 0 0 0 127 127 127 0 0 0 expression 0 longLabel HWP whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HWP cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3HWP localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHwpCellPapPlusRawRep1\ type bigWig 1.000000 1109870.000000\ wgEncodeHaibTfbsK562Hdac2sc6296V0416102RawRep2 K562 HDAC2 V102 2 bigWig 0.140410 281.487000 K562 HDAC2 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 398 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 HDAC2 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 HDAC2 V102 2\ subGroups view=RawSignal factor=HDAC2SC6296 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Hdac2sc6296V0416102RawRep2\ type bigWig 0.140410 281.487000\ wgEncodeCshlLongRnaSeqMcf7CytosolPapMinusRep3 MCF7 cyt pA+ - 1 bigWig 1.000000 777550.000000 MCF-7 cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 398 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel MCF7 cyt pA+ - 1\ subGroups view=MinusSignal cellType=t2MCF7 localization=CYTOSOL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqMcf7CytosolPapMinusRep3\ type bigWig 1.000000 777550.000000\ wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapPlusRawRep3 NHEK nucl TAP + 1 bigWig 1.000000 5253015.000000 NHEK TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 398 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK TAP-only nucleus small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel NHEK nucl TAP + 1\ subGroups view=PlusSignal cellType=t3NHEK localization=NUCLEUS protocol=TAP rep=rep3 rank=rank1\ track wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapPlusRawRep3\ type bigWig 1.000000 5253015.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_ctss_rev Tc:iPStoNeuronDs_Day06R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_reverse 0 398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep3.CNhs14057.13454-144G7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13454-144G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_tpm_rev Tc:iPStoNeuronDs_Day06R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_reverse 1 398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep3.CNhs14057.13454-144G7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13454-144G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcpeH3k4me3StdPkRep1 HCPE H3K4M3 Pk 1 narrowPeak HCPEpiC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 399 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpiC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HCPE H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HCPEPIC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHcpeH3k4me3StdPkRep1\ type narrowPeak\ wgEncodeSydhTfbsHelas3Chd2IggrabSig HeLa CHD2 IgR bigWig 1.000000 8304.000000 HeLa-S3 CHD2 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 399 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 CHD2 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa CHD2 IgR\ subGroups view=Signal factor=CHD2 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Chd2IggrabSig\ type bigWig 1.000000 8304.000000\ encTfChipPkENCFF800XTT HepG2 MAFK 1 narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in HepG2 from ENCODE 3 (ENCFF800XTT) 1 399 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in HepG2 from ENCODE 3 (ENCFF800XTT)\ parent encTfChipPk on\ shortLabel HepG2 MAFK 1\ subGroups cellType=HepG2 factor=MAFK\ track encTfChipPkENCFF800XTT\ wgEncodeAwgTfbsSydhHepg2Mafksc477IggrabUniPk HepG2 MAFK s2 narrowPeak HepG2 TFBS Uniform Peaks of MafK_(SC-477) from ENCODE/Stanford/Analysis 1 399 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of MafK_(SC-477) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 MAFK s2\ subGroups tier=a20 cellType=a20HEPG2 factor=MAFK lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Mafksc477IggrabUniPk\ wgEncodeUwDnaseHpdlfRawRep2 HPdLF Sg 2 bigWig 1.000000 18889.000000 HPdLF DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 399 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPdLF DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HPdLF Sg 2\ subGroups view=zRSig cellType=t3HPDLF rep=rep2 treatment=None\ track wgEncodeUwDnaseHpdlfRawRep2\ type bigWig 1.000000 18889.000000\ wgEncodeBroadHistoneHsmmH3k27acStdPk HSMM H3K27ac broadPeak HSMM H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 399 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMM H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k27acStdPk\ type broadPeak\ wgEncodeRikenCageHwpCellPapPlusRawRep2 HWP cell pA+ + 2 bigWig 1.000000 339385.000000 HWP whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 399 0 0 0 127 127 127 0 0 0 expression 0 longLabel HWP whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel HWP cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3HWP localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHwpCellPapPlusRawRep2\ type bigWig 1.000000 339385.000000\ wgEncodeHaibTfbsK562MaxV0416102PkRep1 K562 Max V102 1 broadPeak K562 Max v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 399 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Max v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 Max V102 1\ subGroups view=Peaks factor=MAX cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562MaxV0416102PkRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqMcf7CytosolPapMinusRep4 MCF7 cyt pA+ - 2 bigWig 1.000000 654289.000000 MCF-7 cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 399 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel MCF7 cyt pA+ - 2\ subGroups view=MinusSignal cellType=t2MCF7 localization=CYTOSOL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqMcf7CytosolPapMinusRep4\ type bigWig 1.000000 654289.000000\ wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapPlusRawRep4 NHEK nucl TAP + 2 bigWig 1.000000 4491850.000000 NHEK TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 399 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK TAP-only nucleus small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel NHEK nucl TAP + 2\ subGroups view=PlusSignal cellType=t3NHEK localization=NUCLEUS protocol=TAP rep=rep4 rank=rank2\ track wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapPlusRawRep4\ type bigWig 1.000000 4491850.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_ctss_fwd Tc:iPStoNeuronDs_Day12R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_forward 0 399 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep1.CNhs13832.13447-144F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13447-144F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_tpm_fwd Tc:iPStoNeuronDs_Day12R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_forward 1 399 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep1.CNhs13832.13447-144F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13447-144F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcpeH3k4me3StdRawRep1 HCPE H3K4M3 Sg 1 bigWig 1.000000 2335.000000 HCPEpiC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 400 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCPEpiC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HCPE H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HCPEPIC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHcpeH3k4me3StdRawRep1\ type bigWig 1.000000 2335.000000\ wgEncodeSydhTfbsHelas3CjunIggrabPk HeLa cJun IgR narrowPeak HeLa-S3 c-Jun IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 400 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 c-Jun IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa cJun IgR\ subGroups view=Peaks factor=CJUN cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3CjunIggrabPk\ type narrowPeak\ encTfChipPkENCFF718CQQ HepG2 MAFK 2 narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in HepG2 from ENCODE 3 (ENCFF718CQQ) 1 400 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in HepG2 from ENCODE 3 (ENCFF718CQQ)\ parent encTfChipPk off\ shortLabel HepG2 MAFK 2\ subGroups cellType=HepG2 factor=MAFK\ track encTfChipPkENCFF718CQQ\ wgEncodeAwgTfbsSydhHepg2MaxIggrabUniPk HepG2 MAX narrowPeak HepG2 TFBS Uniform Peaks of Max from ENCODE/Stanford/Analysis 1 400 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of Max from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 MAX\ subGroups tier=a20 cellType=a20HEPG2 factor=MAX lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2MaxIggrabUniPk\ wgEncodeUwDnaseHpfHotspotsRep1 HPF Ht 1 broadPeak HPF DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 400 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPF DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HPF Ht 1\ subGroups view=Hot cellType=t3HPF rep=rep1 treatment=None\ track wgEncodeUwDnaseHpfHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHsmmH3k27acStdSig HSMM H3K27ac bigWig 0.040000 7472.680176 HSMM H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 400 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMM H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k27acStdSig\ type bigWig 0.040000 7472.680176\ wgEncodeRikenCageHwpCellPapMinusRawRep1 HWP cell pA+ - 1 bigWig 1.000000 456569.000000 HWP whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 400 0 0 0 127 127 127 0 0 0 expression 0 longLabel HWP whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HWP cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3HWP localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHwpCellPapMinusRawRep1\ type bigWig 1.000000 456569.000000\ wgEncodeHaibTfbsK562MaxV0416102RawRep1 K562 Max V102 1 bigWig 0.272688 157.682007 K562 Max v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 400 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Max v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 Max V102 1\ subGroups view=RawSignal factor=MAX cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562MaxV0416102RawRep1\ type bigWig 0.272688 157.682007\ wgEncodeCshlLongRnaSeqMcf7CytosolPapPlusRep3 MCF7 cyt pA+ + 1 bigWig 1.000000 810947.000000 MCF-7 cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 400 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel MCF7 cyt pA+ + 1\ subGroups view=PlusSignal cellType=t2MCF7 localization=CYTOSOL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqMcf7CytosolPapPlusRep3\ type bigWig 1.000000 810947.000000\ wgEncodeCshlShortRnaSeqNhemfm2CellTapContigs NHEf cell TAP C bed 6 NHEM.f_M2 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 400 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHEM.f_M2 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel NHEf cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t3NHEMFM2 localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqNhemfm2CellTapContigs\ type bed 6\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_ctss_rev Tc:iPStoNeuronDs_Day12R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_reverse 0 400 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep1.CNhs13832.13447-144F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13447-144F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_tpm_rev Tc:iPStoNeuronDs_Day12R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_reverse 1 400 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep1.CNhs13832.13447-144F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13447-144F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcpeH3k4me3StdHotspotsRep2 HCPE H3K4M3 Ht 2 broadPeak HCPEpiC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 401 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpiC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HCPE H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HCPEPIC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHcpeH3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeSydhTfbsHelas3CjunIggrabSig HeLa cJun IgR bigWig 0.000000 8194.099609 HeLa-S3 c-Jun IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 401 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 c-Jun IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa cJun IgR\ subGroups view=Signal factor=CJUN cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3CjunIggrabSig\ type bigWig 0.000000 8194.099609\ encTfChipPkENCFF922GRD HepG2 MAX narrowPeak Transcription Factor ChIP-seq Peaks of MAX in HepG2 from ENCODE 3 (ENCFF922GRD) 1 401 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of MAX in HepG2 from ENCODE 3 (ENCFF922GRD)\ parent encTfChipPk on\ shortLabel HepG2 MAX\ subGroups cellType=HepG2 factor=MAX\ track encTfChipPkENCFF922GRD\ wgEncodeAwgTfbsSydhHepg2Mazab85725IggrabUniPk HepG2 MAZ narrowPeak HepG2 TFBS Uniform Peaks of MAZ_(ab85725) from ENCODE/Stanford/Analysis 1 401 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of MAZ_(ab85725) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 MAZ\ subGroups tier=a20 cellType=a20HEPG2 factor=MAZ lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Mazab85725IggrabUniPk\ wgEncodeUwDnaseHpfPkRep1 HPF Pk 1 narrowPeak HPF DNaseI HS Peaks Rep 1 from ENCODE/UW 1 401 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPF DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HPF Pk 1\ subGroups view=Peaks cellType=t3HPF rep=rep1 treatment=None\ track wgEncodeUwDnaseHpfPkRep1\ type narrowPeak\ wgEncodeBroadHistoneHsmmH3k27me3StdPk HSMM H3K27m3 broadPeak HSMM H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 401 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMM H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k27me3StdPk\ type broadPeak\ wgEncodeRikenCageHwpCellPapMinusRawRep2 HWP cell pA+ - 2 bigWig 1.000000 121326.000000 HWP whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 401 0 0 0 127 127 127 0 0 0 expression 0 longLabel HWP whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel HWP cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3HWP localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHwpCellPapMinusRawRep2\ type bigWig 1.000000 121326.000000\ wgEncodeHaibTfbsK562MaxV0416102PkRep2 K562 Max V102 2 broadPeak K562 Max v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 401 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Max v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 Max V102 2\ subGroups view=Peaks factor=MAX cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562MaxV0416102PkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqMcf7CytosolPapPlusRep4 MCF7 cyt pA+ + 2 bigWig 1.000000 628170.000000 MCF-7 cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 401 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel MCF7 cyt pA+ + 2\ subGroups view=PlusSignal cellType=t2MCF7 localization=CYTOSOL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqMcf7CytosolPapPlusRep4\ type bigWig 1.000000 628170.000000\ wgEncodeCshlShortRnaSeqNhemfm2CellTapMinusRep1 NHEf cell TAP - 1 bigWig 1.000000 60132288.000000 NHEM.f_M2 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 401 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM.f_M2 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel NHEf cell TAP - 1\ subGroups view=MinusSignal cellType=t3NHEMFM2 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqNhemfm2CellTapMinusRep1\ type bigWig 1.000000 60132288.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_ctss_fwd Tc:iPStoNeuronDs_Day12R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_forward 0 401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep2.CNhs13845.13451-144G4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13451-144G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_tpm_fwd Tc:iPStoNeuronDs_Day12R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_forward 1 401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep2.CNhs13845.13451-144G4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13451-144G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcpeH3k4me3StdPkRep2 HCPE H3K4M3 Pk 2 narrowPeak HCPEpiC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 402 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpiC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HCPE H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HCPEPIC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHcpeH3k4me3StdPkRep2\ type narrowPeak\ wgEncodeSydhTfbsHelas3CmycStdPk HeLa cMyc Std narrowPeak HeLa-S3 c-Myc Standard ChIP-seq Peaks from ENCODE/SYDH 3 402 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 c-Myc Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa cMyc Std\ subGroups view=Peaks factor=CMYC cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3CmycStdPk\ type narrowPeak\ wgEncodeAwgTfbsHaibHepg2Mbd4sc271530V0422111UniPk HepG2 MBD4 narrowPeak HepG2 TFBS Uniform Peaks of MBD4_(SC-271530) from ENCODE/HudsonAlpha/Analysis 1 402 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of MBD4_(SC-271530) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 MBD4\ subGroups tier=a20 cellType=a20HEPG2 factor=MBD4 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Mbd4sc271530V0422111UniPk\ encTfChipPkENCFF453CYS HepG2 MNT 1 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in HepG2 from ENCODE 3 (ENCFF453CYS) 1 402 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of MNT in HepG2 from ENCODE 3 (ENCFF453CYS)\ parent encTfChipPk off\ shortLabel HepG2 MNT 1\ subGroups cellType=HepG2 factor=MNT\ track encTfChipPkENCFF453CYS\ wgEncodeUwDnaseHpfRawRep1 HPF Sg 1 bigWig 1.000000 15633.000000 HPF DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 402 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPF DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HPF Sg 1\ subGroups view=zRSig cellType=t3HPF rep=rep1 treatment=None\ track wgEncodeUwDnaseHpfRawRep1\ type bigWig 1.000000 15633.000000\ wgEncodeBroadHistoneHsmmH3k27me3StdSig HSMM H3K27m3 bigWig 0.040000 10213.759766 HSMM H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 402 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMM H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k27me3StdSig\ type bigWig 0.040000 10213.759766\ wgEncodeRikenCageHwpCellPapAlnRep1 HWP cell pA+ A 1 bam HWP whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 402 0 0 0 127 127 127 0 0 0 expression 1 longLabel HWP whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HWP cell pA+ A 1\ subGroups view=Alignments cellType=t3HWP localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageHwpCellPapAlnRep1\ type bam\ wgEncodeHaibTfbsK562MaxV0416102RawRep2 K562 Max V102 2 bigWig 0.140969 134.238007 K562 Max v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 402 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Max v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 Max V102 2\ subGroups view=RawSignal factor=MAX cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562MaxV0416102RawRep2\ type bigWig 0.140969 134.238007\ wgEncodeCshlLongRnaSeqMcf7NucleusPapAlnRep3 MCF7 nuc pA+ A 1 bam MCF-7 nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 402 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel MCF7 nuc pA+ A 1\ subGroups view=Alignments cellType=t2MCF7 localization=NUCLEUS rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqMcf7NucleusPapAlnRep3\ type bam\ wgEncodeCshlShortRnaSeqNhemfm2CellTapMinusRep2 NHEf cell TAP - 2 bigWig 1.000000 45512792.000000 NHEM.f_M2 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 402 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM.f_M2 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel NHEf cell TAP - 2\ subGroups view=MinusSignal cellType=t3NHEMFM2 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqNhemfm2CellTapMinusRep2\ type bigWig 1.000000 45512792.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_ctss_rev Tc:iPStoNeuronDs_Day12R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_reverse 0 402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep2.CNhs13845.13451-144G4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13451-144G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_tpm_rev Tc:iPStoNeuronDs_Day12R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_reverse 1 402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep2.CNhs13845.13451-144G4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13451-144G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcpeH3k4me3StdRawRep2 HCPE H3K4M3 Sg 2 bigWig 1.000000 3567.000000 HCPEpiC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 403 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCPEpiC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HCPE H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HCPEPIC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHcpeH3k4me3StdRawRep2\ type bigWig 1.000000 3567.000000\ wgEncodeSydhTfbsHelas3CmycStdSig HeLa cMyc Std bigWig 0.000000 7654.700195 HeLa-S3 c-Myc Standard ChIP-seq Signal from ENCODE/SYDH 2 403 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 c-Myc Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa cMyc Std\ subGroups view=Signal factor=CMYC cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3CmycStdSig\ type bigWig 0.000000 7654.700195\ encTfChipPkENCFF763GJP HepG2 MNT 2 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in HepG2 from ENCODE 3 (ENCFF763GJP) 1 403 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of MNT in HepG2 from ENCODE 3 (ENCFF763GJP)\ parent encTfChipPk off\ shortLabel HepG2 MNT 2\ subGroups cellType=HepG2 factor=MNT\ track encTfChipPkENCFF763GJP\ wgEncodeAwgTfbsSydhHepg2Mxi1UniPk HepG2 MXI1 narrowPeak HepG2 TFBS Uniform Peaks of Mxi1_(AF4185) from ENCODE/Stanford/Analysis 1 403 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of Mxi1_(AF4185) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 MXI1\ subGroups tier=a20 cellType=a20HEPG2 factor=MXI1 lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Mxi1UniPk\ wgEncodeUwDnaseHpfHotspotsRep2 HPF Ht 2 broadPeak HPF DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 403 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPF DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HPF Ht 2\ subGroups view=Hot cellType=t3HPF rep=rep2 treatment=None\ track wgEncodeUwDnaseHpfHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneHsmmH3k36me3StdPk HSMM H3K36m3 broadPeak HSMM H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 403 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMM H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k36me3StdPk\ type broadPeak\ wgEncodeRikenCageHwpCellPapAlnRep2 HWP cell pA+ A 2 bam HWP whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 403 0 0 0 127 127 127 0 0 0 expression 1 longLabel HWP whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel HWP cell pA+ A 2\ subGroups view=Alignments cellType=t3HWP localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageHwpCellPapAlnRep2\ type bam\ wgEncodeHaibTfbsK562Mef2aV0416101PkRep1 K562 MEF2A V101 1 broadPeak K562 MEF2A v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 403 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 MEF2A v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 MEF2A V101 1\ subGroups view=Peaks factor=MEF2A cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Mef2aV0416101PkRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqMcf7NucleusPapAlnRep4 MCF7 nuc pA+ A 2 bam MCF-7 nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 403 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel MCF7 nuc pA+ A 2\ subGroups view=Alignments cellType=t2MCF7 localization=NUCLEUS rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqMcf7NucleusPapAlnRep4\ type bam\ wgEncodeCshlShortRnaSeqNhemfm2CellTapPlusRep1 NHEf cell TAP + 1 bigWig 1.000000 9014913.000000 NHEM.f_M2 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 403 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM.f_M2 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel NHEf cell TAP + 1\ subGroups view=PlusSignal cellType=t3NHEMFM2 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqNhemfm2CellTapPlusRep1\ type bigWig 1.000000 9014913.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_ctss_fwd Tc:iPStoNeuronDs_Day12R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_forward 0 403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep3.CNhs14058.13455-144G8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13455-144G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_tpm_fwd Tc:iPStoNeuronDs_Day12R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_forward 1 403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep3.CNhs14058.13455-144G8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13455-144G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHcpeInputStdRawRep1 HCPE In Sg 1 bigWig 1.000000 15167.000000 HCPEpiC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 404 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCPEpiC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HCPE In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HCPEPIC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHcpeInputStdRawRep1\ type bigWig 1.000000 15167.000000\ wgEncodeSydhTfbsHelas3Corestsc30189IggrabPk HeLa COREST IgR narrowPeak HeLa-S3 COREST SC30189 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 404 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 COREST SC30189 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa COREST IgR\ subGroups view=Peaks factor=CORESTSC30189 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Corestsc30189IggrabPk\ type narrowPeak\ wgEncodeAwgTfbsHaibHepg2Mybl2sc81192V0422111UniPk HepG2 MYBL2 narrowPeak HepG2 TFBS Uniform Peaks of MYBL2_(SC-81192) from ENCODE/HudsonAlpha/Analysis 1 404 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of MYBL2_(SC-81192) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 MYBL2\ subGroups tier=a20 cellType=a20HEPG2 factor=MYBL2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Mybl2sc81192V0422111UniPk\ encTfChipPkENCFF075PDC HepG2 NBN narrowPeak Transcription Factor ChIP-seq Peaks of NBN in HepG2 from ENCODE 3 (ENCFF075PDC) 1 404 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of NBN in HepG2 from ENCODE 3 (ENCFF075PDC)\ parent encTfChipPk off\ shortLabel HepG2 NBN\ subGroups cellType=HepG2 factor=NBN\ track encTfChipPkENCFF075PDC\ wgEncodeUwDnaseHpfPkRep2 HPF Pk 2 narrowPeak HPF DNaseI HS Peaks Rep 2 from ENCODE/UW 1 404 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPF DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HPF Pk 2\ subGroups view=Peaks cellType=t3HPF rep=rep2 treatment=None\ track wgEncodeUwDnaseHpfPkRep2\ type narrowPeak\ wgEncodeBroadHistoneHsmmH3k36me3StdSig HSMM H3K36m3 bigWig 0.040000 11937.519531 HSMM H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 404 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMM H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k36me3StdSig\ type bigWig 0.040000 11937.519531\ wgEncodeHaibTfbsK562Mef2aV0416101RawRep1 K562 MEF2A V101 1 bigWig 0.176177 145.037994 K562 MEF2A v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 404 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 MEF2A v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 MEF2A V101 1\ subGroups view=RawSignal factor=MEF2A cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Mef2aV0416101RawRep1\ type bigWig 0.176177 145.037994\ wgEncodeCshlLongRnaSeqMcf7NucleusPapContigs MCF7 nuc pA+ C bed 6 + MCF-7 nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 404 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel MCF7 nuc pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2MCF7 localization=NUCLEUS rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqMcf7NucleusPapContigs\ type bed 6 +\ wgEncodeRikenCageNhdfCellPapTssHmm NHDF cell pA+ bed 6 NHDF whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 404 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHDF whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel NHDF cell pA+\ subGroups view=TssHmm cellType=t3NHDF localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageNhdfCellPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqNhemfm2CellTapPlusRep2 NHEf cell TAP + 2 bigWig 1.000000 4278888.000000 NHEM.f_M2 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 404 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM.f_M2 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel NHEf cell TAP + 2\ subGroups view=PlusSignal cellType=t3NHEMFM2 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqNhemfm2CellTapPlusRep2\ type bigWig 1.000000 4278888.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_ctss_rev Tc:iPStoNeuronDs_Day12R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_reverse 0 404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep3.CNhs14058.13455-144G8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13455-144G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_tpm_rev Tc:iPStoNeuronDs_Day12R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_reverse 1 404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep3.CNhs14058.13455-144G8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13455-144G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHct116H3k4me3StdHotspotsRep1 HCT16 H3K4M3 Ht 1 broadPeak HCT-116 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 405 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HCT16 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HCT116 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHct116H3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeSydhTfbsHelas3Corestsc30189IggrabSig HeLa COREST IgR bigWig 1.000000 14048.000000 HeLa-S3 COREST SC30189 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 405 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 COREST SC30189 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa COREST IgR\ subGroups view=Signal factor=CORESTSC30189 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Corestsc30189IggrabSig\ type bigWig 1.000000 14048.000000\ wgEncodeAwgTfbsUtaHepg2CmycUniPk HepG2 MYC narrowPeak HepG2 TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis 1 405 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 MYC\ subGroups tier=a20 cellType=a20HEPG2 factor=MYC lab=UT-A\ track wgEncodeAwgTfbsUtaHepg2CmycUniPk\ encTfChipPkENCFF033BDT HepG2 NCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of NCOR1 in HepG2 from ENCODE 3 (ENCFF033BDT) 1 405 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of NCOR1 in HepG2 from ENCODE 3 (ENCFF033BDT)\ parent encTfChipPk off\ shortLabel HepG2 NCOR1\ subGroups cellType=HepG2 factor=NCOR1\ track encTfChipPkENCFF033BDT\ wgEncodeUwDnaseHpfRawRep2 HPF Sg 2 bigWig 1.000000 27053.000000 HPF DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 405 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPF DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HPF Sg 2\ subGroups view=zRSig cellType=t3HPF rep=rep2 treatment=None\ track wgEncodeUwDnaseHpfRawRep2\ type bigWig 1.000000 27053.000000\ wgEncodeBroadHistoneHsmmH3k79me2StdPk HSMM H3K79m2 broadPeak HSMM H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 405 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMM H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k79me2StdPk\ type broadPeak\ wgEncodeHaibTfbsK562Mef2aV0416101PkRep2 K562 MEF2A V101 2 broadPeak K562 MEF2A v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 405 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 MEF2A v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 MEF2A V101 2\ subGroups view=Peaks factor=MEF2A cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Mef2aV0416101PkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqMcf7NucleusPapJunctions MCF7 nuc pA+ J bed 6 + MCF-7 nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 405 0 0 0 127 127 127 0 0 0 expression 1 longLabel MCF-7 nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel MCF7 nuc pA+ J\ subGroups view=Junctions cellType=t2MCF7 localization=NUCLEUS rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqMcf7NucleusPapJunctions\ type bed 6 +\ wgEncodeRikenCageNhdfCellPapPlusRawRep1 NHDF cell pA+ + 1 bigWig 1.000000 1361520.000000 NHDF whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 405 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHDF whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel NHDF cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3NHDF localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageNhdfCellPapPlusRawRep1\ type bigWig 1.000000 1361520.000000\ wgEncodeCshlShortRnaSeqNhemm2CellTapContigs NHEM cell TAP C bed 6 NHEM_M2 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 405 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHEM_M2 TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel NHEM cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t3NHEMM2 localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqNhemm2CellTapContigs\ type bed 6\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_ctss_fwd Tc:iPStoNeuronDs_Day18R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_forward 0 405 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep1.CNhs13833.13448-144G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13448-144G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_tpm_fwd Tc:iPStoNeuronDs_Day18R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_forward 1 405 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep1.CNhs13833.13448-144G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13448-144G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHct116H3k4me3StdPkRep1 HCT16 H3K4M3 Pk 1 narrowPeak HCT-116 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 406 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HCT16 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HCT116 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHct116H3k4me3StdPkRep1\ type narrowPeak\ wgEncodeSydhTfbsHelas3E2f1StdPk HeLa E2F1 Std narrowPeak HeLa-S3 E2F1 Standard ChIP-seq Peaks from ENCODE/SYDH 3 406 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 E2F1 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa E2F1 Std\ subGroups view=Peaks factor=E2F1 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3E2f1StdPk\ type narrowPeak\ encTfChipPkENCFF297BXM HepG2 NFE2L2 narrowPeak Transcription Factor ChIP-seq Peaks of NFE2L2 in HepG2 from ENCODE 3 (ENCFF297BXM) 1 406 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of NFE2L2 in HepG2 from ENCODE 3 (ENCFF297BXM)\ parent encTfChipPk off\ shortLabel HepG2 NFE2L2\ subGroups cellType=HepG2 factor=NFE2L2\ track encTfChipPkENCFF297BXM\ wgEncodeAwgTfbsHaibHepg2Nficsc81335V0422111UniPk HepG2 NFIC narrowPeak HepG2 TFBS Uniform Peaks of NFIC_(SC-81335) from ENCODE/HudsonAlpha/Analysis 1 406 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of NFIC_(SC-81335) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 NFIC\ subGroups tier=a20 cellType=a20HEPG2 factor=NFIC lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Nficsc81335V0422111UniPk\ wgEncodeUwDnaseHrceHotspotsRep1 HRCEpiC Ht 1 broadPeak HRCEpiC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 406 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRCEpiC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HRCEpiC Ht 1\ subGroups view=Hot cellType=t3HRCEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHrceHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHsmmH3k79me2StdSig HSMM H3K79m2 bigWig 0.040000 12545.360352 HSMM H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 406 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMM H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH3k79me2StdSig\ type bigWig 0.040000 12545.360352\ wgEncodeHaibTfbsK562Mef2aV0416101RawRep2 K562 MEF2A V101 2 bigWig 0.186546 484.506989 K562 MEF2A v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 406 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 MEF2A v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 MEF2A V101 2\ subGroups view=RawSignal factor=MEF2A cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Mef2aV0416101RawRep2\ type bigWig 0.186546 484.506989\ wgEncodeCshlLongRnaSeqMcf7NucleusPapMinusRep3 MCF7 nuc pA+ - 1 bigWig 1.000000 268921.000000 MCF-7 nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 406 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel MCF7 nuc pA+ - 1\ subGroups view=MinusSignal cellType=t2MCF7 localization=NUCLEUS rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqMcf7NucleusPapMinusRep3\ type bigWig 1.000000 268921.000000\ wgEncodeRikenCageNhdfCellPapPlusRawRep2 NHDF cell pA+ + 2 bigWig 1.000000 1029360.000000 NHDF whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 406 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHDF whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel NHDF cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3NHDF localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageNhdfCellPapPlusRawRep2\ type bigWig 1.000000 1029360.000000\ wgEncodeCshlShortRnaSeqNhemm2CellTapMinusRep1 NHEM cell TAP - 1 bigWig 1.000000 83772768.000000 NHEM_M2 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 406 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM_M2 TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel NHEM cell TAP - 1\ subGroups view=MinusSignal cellType=t3NHEMM2 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqNhemm2CellTapMinusRep1\ type bigWig 1.000000 83772768.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_ctss_rev Tc:iPStoNeuronDs_Day18R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_reverse 0 406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep1.CNhs13833.13448-144G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13448-144G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_tpm_rev Tc:iPStoNeuronDs_Day18R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_reverse 1 406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep1.CNhs13833.13448-144G1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13448-144G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHct116H3k4me3StdRawRep1 HCT16 H3K4M3 Sg 1 bigWig 1.000000 4897.000000 HCT-116 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 407 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HCT16 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HCT116 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHct116H3k4me3StdRawRep1\ type bigWig 1.000000 4897.000000\ wgEncodeSydhTfbsHelas3E2f1StdSig HeLa E2F1 Std bigWig 0.000000 14779.799805 HeLa-S3 E2F1 Standard ChIP-seq Signal from ENCODE/SYDH 2 407 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 E2F1 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa E2F1 Std\ subGroups view=Signal factor=E2F1 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3E2f1StdSig\ type bigWig 0.000000 14779.799805\ encTfChipPkENCFF132QLW HepG2 NFRKB narrowPeak Transcription Factor ChIP-seq Peaks of NFRKB in HepG2 from ENCODE 3 (ENCFF132QLW) 1 407 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of NFRKB in HepG2 from ENCODE 3 (ENCFF132QLW)\ parent encTfChipPk off\ shortLabel HepG2 NFRKB\ subGroups cellType=HepG2 factor=NFRKB\ track encTfChipPkENCFF132QLW\ wgEncodeAwgTfbsSydhHepg2Tr4UcdUniPk HepG2 NR2C2 narrowPeak HepG2 TFBS Uniform Peaks of TR4 from ENCODE/USC/Analysis 1 407 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of TR4 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 NR2C2\ subGroups tier=a20 cellType=a20HEPG2 factor=NR2C2 lab=USC\ track wgEncodeAwgTfbsSydhHepg2Tr4UcdUniPk\ wgEncodeUwDnaseHrcePkRep1 HRCEpiC Pk 1 narrowPeak HRCEpiC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 407 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRCEpiC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HRCEpiC Pk 1\ subGroups view=Peaks cellType=t3HRCEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHrcePkRep1\ type narrowPeak\ wgEncodeBroadHistoneHsmmH4k20me1StdPk HSMM H4K20m1 broadPeak HSMM H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 407 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMM H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMM H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH4k20me1StdPk\ type broadPeak\ wgEncodeHaibTfbsK562Nr2f2sc271940V0422111PkRep1 K562 NR2F2 V11 1 broadPeak K562 NR2F2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 407 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 NR2F2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 NR2F2 V11 1\ subGroups view=Peaks factor=NR2F2SC271940 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Nr2f2sc271940V0422111PkRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqMcf7NucleusPapMinusRep4 MCF7 nuc pA+ - 2 bigWig 1.000000 171431.000000 MCF-7 nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 407 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel MCF7 nuc pA+ - 2\ subGroups view=MinusSignal cellType=t2MCF7 localization=NUCLEUS rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqMcf7NucleusPapMinusRep4\ type bigWig 1.000000 171431.000000\ wgEncodeRikenCageNhdfCellPapMinusRawRep1 NHDF cell pA+ - 1 bigWig 1.000000 592278.000000 NHDF whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 407 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHDF whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel NHDF cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3NHDF localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageNhdfCellPapMinusRawRep1\ type bigWig 1.000000 592278.000000\ wgEncodeCshlShortRnaSeqNhemm2CellTapMinusRep2 NHEM cell TAP - 2 bigWig 1.000000 36152212.000000 NHEM_M2 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 407 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM_M2 TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel NHEM cell TAP - 2\ subGroups view=MinusSignal cellType=t3NHEMM2 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqNhemm2CellTapMinusRep2\ type bigWig 1.000000 36152212.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_ctss_fwd Tc:iPStoNeuronDs_Day18R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_forward 0 407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep2.CNhs13846.13452-144G5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13452-144G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_tpm_fwd Tc:iPStoNeuronDs_Day18R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_forward 1 407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep2.CNhs13846.13452-144G5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13452-144G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHct116H3k4me3StdHotspotsRep2 HCT16 H3K4M3 Ht 2 broadPeak HCT-116 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 408 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HCT16 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HCT116 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHct116H3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeSydhTfbsHelas3E2f4StdPk HeLa E2F4 Std narrowPeak HeLa-S3 E2F4 Standard ChIP-seq Peaks from ENCODE/SYDH 3 408 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 E2F4 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa E2F4 Std\ subGroups view=Peaks factor=E2F4 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3E2f4StdPk\ type narrowPeak\ encTfChipPkENCFF311LEU HepG2 NR2F6 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F6 in HepG2 from ENCODE 3 (ENCFF311LEU) 1 408 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of NR2F6 in HepG2 from ENCODE 3 (ENCFF311LEU)\ parent encTfChipPk off\ shortLabel HepG2 NR2F6\ subGroups cellType=HepG2 factor=NR2F6\ track encTfChipPkENCFF311LEU\ wgEncodeAwgTfbsSydhHepg2Nrf1IggrabUniPk HepG2 NRF1 narrowPeak HepG2 TFBS Uniform Peaks of Nrf1 from ENCODE/Stanford/Analysis 1 408 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of Nrf1 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 NRF1\ subGroups tier=a20 cellType=a20HEPG2 factor=NRF1 lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Nrf1IggrabUniPk\ wgEncodeUwDnaseHrceRawRep1 HRCEpiC Sg 1 bigWig 1.000000 10959.000000 HRCEpiC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 408 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRCEpiC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HRCEpiC Sg 1\ subGroups view=zRSig cellType=t3HRCEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHrceRawRep1\ type bigWig 1.000000 10959.000000\ wgEncodeBroadHistoneHsmmH4k20me1StdSig HSMM H4K20m1 bigWig 0.040000 13583.440430 HSMM H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 408 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMM H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmH4k20me1StdSig\ type bigWig 0.040000 13583.440430\ wgEncodeHaibTfbsK562Nr2f2sc271940V0422111RawRep1 K562 NR2F2 V11 1 bigWig 0.091608 107.342003 K562 NR2F2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 408 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 NR2F2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 NR2F2 V11 1\ subGroups view=RawSignal factor=NR2F2SC271940 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Nr2f2sc271940V0422111RawRep1\ type bigWig 0.091608 107.342003\ wgEncodeCshlLongRnaSeqMcf7NucleusPapPlusRep3 MCF7 nuc pA+ + 1 bigWig 1.000000 260473.000000 MCF-7 nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 408 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel MCF7 nuc pA+ + 1\ subGroups view=PlusSignal cellType=t2MCF7 localization=NUCLEUS rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqMcf7NucleusPapPlusRep3\ type bigWig 1.000000 260473.000000\ wgEncodeRikenCageNhdfCellPapMinusRawRep2 NHDF cell pA+ - 2 bigWig 1.000000 480018.000000 NHDF whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 408 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHDF whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel NHDF cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3NHDF localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageNhdfCellPapMinusRawRep2\ type bigWig 1.000000 480018.000000\ wgEncodeCshlShortRnaSeqNhemm2CellTapPlusRep1 NHEM cell TAP + 1 bigWig 1.000000 10394852.000000 NHEM_M2 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 408 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM_M2 TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel NHEM cell TAP + 1\ subGroups view=PlusSignal cellType=t3NHEMM2 localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqNhemm2CellTapPlusRep1\ type bigWig 1.000000 10394852.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_ctss_rev Tc:iPStoNeuronDs_Day18R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_reverse 0 408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep2.CNhs13846.13452-144G5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13452-144G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_tpm_rev Tc:iPStoNeuronDs_Day18R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_reverse 1 408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep2.CNhs13846.13452-144G5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13452-144G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneHct116H3k4me3StdPkRep2 HCT16 H3K4M3 Pk 2 narrowPeak HCT-116 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 409 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HCT16 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HCT116 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHct116H3k4me3StdPkRep2\ type narrowPeak\ wgEncodeSydhTfbsHelas3E2f4StdSig HeLa E2F4 Std bigWig 0.000000 9093.000000 HeLa-S3 E2F4 Standard ChIP-seq Signal from ENCODE/SYDH 2 409 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 E2F4 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa E2F4 Std\ subGroups view=Signal factor=E2F4 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3E2f4StdSig\ type bigWig 0.000000 9093.000000\ encTfChipPkENCFF003GNY HepG2 NRF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in HepG2 from ENCODE 3 (ENCFF003GNY) 1 409 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in HepG2 from ENCODE 3 (ENCFF003GNY)\ parent encTfChipPk off\ shortLabel HepG2 NRF1 1\ subGroups cellType=HepG2 factor=NRF1\ track encTfChipPkENCFF003GNY\ wgEncodeAwgTfbsHaibHepg2Pol24h8V0416102UniPk HepG2 POLR2A h narrowPeak HepG2 TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis 1 409 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel HepG2 POLR2A h\ subGroups tier=a20 cellType=a20HEPG2 factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Pol24h8V0416102UniPk\ wgEncodeUwDnaseHrceHotspotsRep2 HRCEpiC Ht 2 broadPeak HRCEpiC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 409 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRCEpiC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HRCEpiC Ht 2\ subGroups view=Hot cellType=t3HRCEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHrceHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneHsmmControlStdSig HSMM Input bigWig 0.040000 15504.480469 HSMM Input Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 409 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMM Input Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMM Input\ subGroups view=Signal factor=zCTRL cellType=t3HSMM treatment=zNONE\ track wgEncodeBroadHistoneHsmmControlStdSig\ type bigWig 0.040000 15504.480469\ wgEncodeHaibTfbsK562Nr2f2sc271940V0422111PkRep2 K562 NR2F2 V11 2 broadPeak K562 NR2F2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 409 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 NR2F2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 NR2F2 V11 2\ subGroups view=Peaks factor=NR2F2SC271940 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Nr2f2sc271940V0422111PkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqMcf7NucleusPapPlusRep4 MCF7 nuc pA+ + 2 bigWig 1.000000 219145.000000 MCF-7 nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 409 0 0 0 127 127 127 0 0 0 expression 0 longLabel MCF-7 nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel MCF7 nuc pA+ + 2\ subGroups view=PlusSignal cellType=t2MCF7 localization=NUCLEUS rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqMcf7NucleusPapPlusRep4\ type bigWig 1.000000 219145.000000\ wgEncodeRikenCageNhdfCellPapAlnRep1 NHDF cell pA+ A 1 bam NHDF whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 409 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHDF whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel NHDF cell pA+ A 1\ subGroups view=Alignments cellType=t3NHDF localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageNhdfCellPapAlnRep1\ type bam\ wgEncodeCshlShortRnaSeqNhemm2CellTapPlusRep2 NHEM cell TAP + 2 bigWig 1.000000 3224204.000000 NHEM_M2 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 409 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM_M2 TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel NHEM cell TAP + 2\ subGroups view=PlusSignal cellType=t3NHEMM2 localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqNhemm2CellTapPlusRep2\ type bigWig 1.000000 3224204.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_ctss_fwd Tc:iPStoNeuronDs_Day18R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_forward 0 409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep3.CNhs14059.13456-144G9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13456-144G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_tpm_fwd Tc:iPStoNeuronDs_Day18R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_forward 1 409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep3.CNhs14059.13456-144G9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13456-144G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqMonocd14CellPamAlnRep1 CD14 cel pA- A 1 bam MonocytesCD14+ whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 410 0 0 0 127 127 127 0 0 0 expression 1 longLabel MonocytesCD14+ whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel CD14 cel pA- A 1\ subGroups view=Alignments cellType=t2MONOCYTESCD14 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqMonocd14CellPamAlnRep1\ type bam\ wgEncodeUwHistoneHct116H3k4me3StdRawRep2 HCT16 H3K4M3 Sg 2 bigWig 1.000000 7182.000000 HCT-116 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 410 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HCT16 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HCT116 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHct116H3k4me3StdRawRep2\ type bigWig 1.000000 7182.000000\ wgEncodeSydhTfbsHelas3E2f6StdPk HeLa E2F6 Std narrowPeak HeLa-S3 E2F6 Standard ChIP-seq Peaks from ENCODE/SYDH 3 410 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 E2F6 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa E2F6 Std\ subGroups view=Peaks factor=E2F6 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3E2f6StdPk\ type narrowPeak\ encTfChipPkENCFF972NIR HepG2 NRF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in HepG2 from ENCODE 3 (ENCFF972NIR) 1 410 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in HepG2 from ENCODE 3 (ENCFF972NIR)\ parent encTfChipPk off\ shortLabel HepG2 NRF1 2\ subGroups cellType=HepG2 factor=NRF1\ track encTfChipPkENCFF972NIR\ wgEncodeAwgTfbsHaibHepg2Pol2Pcr2xUniPk HepG2 POLR2A h2 narrowPeak HepG2 TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis 1 410 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 POLR2A h2\ subGroups tier=a20 cellType=a20HEPG2 factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Pol2Pcr2xUniPk\ wgEncodeUwDnaseHrcePkRep2 HRCEpiC Pk 2 narrowPeak HRCEpiC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 410 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRCEpiC DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HRCEpiC Pk 2\ subGroups view=Peaks cellType=t3HRCEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHrcePkRep2\ type narrowPeak\ wgEncodeBroadHistoneHsmmtCtcfStdPk HSMMtube CTCF broadPeak HSMMtube CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 410 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMMtube CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMMtube CTCF\ subGroups view=Peaks factor=CTCF cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtCtcfStdPk\ type broadPeak\ wgEncodeHaibTfbsK562Nr2f2sc271940V0422111RawRep2 K562 NR2F2 V11 2 bigWig 0.130904 300.653015 K562 NR2F2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 410 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 NR2F2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 NR2F2 V11 2\ subGroups view=RawSignal factor=NR2F2SC271940 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Nr2f2sc271940V0422111RawRep2\ type bigWig 0.130904 300.653015\ wgEncodeRikenCageNhdfCellPapAlnRep2 NHDF cell pA+ A 2 bam NHDF whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 410 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHDF whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel NHDF cell pA+ A 2\ subGroups view=Alignments cellType=t3NHDF localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageNhdfCellPapAlnRep2\ type bam\ wgEncodeCshlShortRnaSeqProstateCellTotalMinusRaw Pros cell TAP - 1 bigWig 1.000000 1843044.000000 Prostate TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 410 0 0 0 127 127 127 0 0 0 expression 0 longLabel Prostate TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel Pros cell TAP - 1\ subGroups view=MinusSignal cellType=t3PROSTATE localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqProstateCellTotalMinusRaw\ type bigWig 1.000000 1843044.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_ctss_rev Tc:iPStoNeuronDs_Day18R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_reverse 0 410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep3.CNhs14059.13456-144G9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13456-144G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_tpm_rev Tc:iPStoNeuronDs_Day18R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_reverse 1 410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep3.CNhs14059.13456-144G9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13456-144G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqMonocd14CellPamAlnRep2 CD14 cel pA- A 2 bam MonocytesCD14+ whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 411 0 0 0 127 127 127 0 0 0 expression 1 longLabel MonocytesCD14+ whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel CD14 cel pA- A 2\ subGroups view=Alignments cellType=t2MONOCYTESCD14 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqMonocd14CellPamAlnRep2\ type bam\ wgEncodeUwHistoneHct116InputStdRawRep1 HCT16 In Sg 1 bigWig 1.000000 14872.000000 HCT-116 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 411 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HCT16 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HCT116 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHct116InputStdRawRep1\ type bigWig 1.000000 14872.000000\ wgEncodeSydhTfbsHelas3E2f6StdSig HeLa E2F6 Std bigWig 0.000000 6492.799805 HeLa-S3 E2F6 Standard ChIP-seq Signal from ENCODE/SYDH 2 411 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 E2F6 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa E2F6 Std\ subGroups view=Signal factor=E2F6 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3E2f6StdSig\ type bigWig 0.000000 6492.799805\ encTfChipPkENCFF468MIF HepG2 PCBP1 narrowPeak Transcription Factor ChIP-seq Peaks of PCBP1 in HepG2 from ENCODE 3 (ENCFF468MIF) 1 411 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of PCBP1 in HepG2 from ENCODE 3 (ENCFF468MIF)\ parent encTfChipPk off\ shortLabel HepG2 PCBP1\ subGroups cellType=HepG2 factor=PCBP1\ track encTfChipPkENCFF468MIF\ wgEncodeAwgTfbsSydhHepg2Pol2IggrabUniPk HepG2 POLR2A s narrowPeak HepG2 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis 1 411 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 POLR2A s\ subGroups tier=a20 cellType=a20HEPG2 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Pol2IggrabUniPk\ wgEncodeUwDnaseHrceRawRep2 HRCEpiC Sg 2 bigWig 1.000000 9826.000000 HRCEpiC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 411 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRCEpiC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HRCEpiC Sg 2\ subGroups view=zRSig cellType=t3HRCEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHrceRawRep2\ type bigWig 1.000000 9826.000000\ wgEncodeBroadHistoneHsmmtCtcfStdSig HSMMtube CTCF bigWig 0.040000 15696.320312 HSMMtube CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 411 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMMtube CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMMtube CTCF\ subGroups view=Signal factor=CTCF cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtCtcfStdSig\ type bigWig 0.040000 15696.320312\ wgEncodeHaibTfbsK562NrsfV0416102PkRep1 K562 NRSF V102 1 broadPeak K562 NRSF v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 411 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 NRSF v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 NRSF V102 1\ subGroups view=Peaks factor=NRSF cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562NrsfV0416102PkRep1\ type broadPeak\ wgEncodeRikenCageNhekCytosolPamTssHmmV2 NHEK cyto pA- bed 6 NHEK cytosol polyA- CAGE TSS HMM from ENCODE/RIKEN 3 411 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK cytosol polyA- CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel NHEK cyto pA-\ subGroups view=TssHmm cellType=t3NHEK localization=cytosol rnaExtract=pAM rep=rep0 rank=rankP\ track wgEncodeRikenCageNhekCytosolPamTssHmmV2\ type bed 6\ wgEncodeCshlShortRnaSeqProstateCellTotalPlusRaw Pros cell TAP + 1 bigWig 1.000000 2318106.000000 Prostate TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 411 0 0 0 127 127 127 0 0 0 expression 0 longLabel Prostate TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel Pros cell TAP + 1\ subGroups view=PlusSignal cellType=t3PROSTATE localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqProstateCellTotalPlusRaw\ type bigWig 1.000000 2318106.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_ctss_fwd Tc:iPStoNeuronDs_Day00R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_forward 0 411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep1.CNhs13835.13457-144H1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13457-144H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_tpm_fwd Tc:iPStoNeuronDs_Day00R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_forward 1 411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep1.CNhs13835.13457-144H1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13457-144H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqMonocd14CellPamContigs CD14 cel pA- C bed 6 + MonocytesCD14+ whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 412 0 0 0 127 127 127 0 0 0 expression 1 longLabel MonocytesCD14+ whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel CD14 cel pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2MONOCYTESCD14 localization=CELL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqMonocd14CellPamContigs\ type bed 6 +\ wgEncodeUwHistoneHeeH3k4me3StdHotspotsRep1 HEE H3K4M3 Ht 1 broadPeak HEEpIC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 412 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpIC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HEE H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HEEPIC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHeeH3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeSydhTfbsHelas3Elk112771IggrabPk HeLa ELK1 IgR narrowPeak HeLa-S3 ELK1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 412 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 ELK1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa ELK1 IgR\ subGroups view=Peaks factor=ELK112771 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Elk112771IggrabPk\ type narrowPeak\ encTfChipPkENCFF460OWI HepG2 PCBP2 narrowPeak Transcription Factor ChIP-seq Peaks of PCBP2 in HepG2 from ENCODE 3 (ENCFF460OWI) 1 412 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of PCBP2 in HepG2 from ENCODE 3 (ENCFF460OWI)\ parent encTfChipPk off\ shortLabel HepG2 PCBP2\ subGroups cellType=HepG2 factor=PCBP2\ track encTfChipPkENCFF460OWI\ wgEncodeAwgTfbsSydhHepg2Pol2s2IggrabUniPk HepG2 POLR2A s2 narrowPeak HepG2 TFBS Uniform Peaks of Pol2(phosphoS2) from ENCODE/Stanford/Analysis 1 412 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of Pol2(phosphoS2) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 POLR2A s2\ subGroups tier=a20 cellType=a20HEPG2 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Pol2s2IggrabUniPk\ wgEncodeUwDnaseHreHotspotsRep1 HRE Ht 1 broadPeak HRE DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 412 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HRE Ht 1\ subGroups view=Hot cellType=t3HRE rep=rep1 treatment=None\ track wgEncodeUwDnaseHreHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHsmmtEzh239875Pk HSMMtube EZH2 broadPeak HSMMtube EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 412 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMMtube EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMMtube EZH2\ subGroups view=Peaks factor=EZH239875 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtEzh239875Pk\ type broadPeak\ wgEncodeHaibTfbsK562NrsfV0416102RawRep1 K562 NRSF V102 1 bigWig 0.175512 296.000000 K562 NRSF v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 412 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 NRSF v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 NRSF V102 1\ subGroups view=RawSignal factor=NRSF cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562NrsfV0416102RawRep1\ type bigWig 0.175512 296.000000\ wgEncodeRikenCageNhekCytosolPamPlusSignal NHEK cyto pA- + 1 bigWig 0.040000 4464.319824 NHEK cytosol polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 412 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK cytosol polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel NHEK cyto pA- + 1\ subGroups view=PlusRawSignal cellType=t3NHEK localization=cytosol rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageNhekCytosolPamPlusSignal\ type bigWig 0.040000 4464.319824\ wgEncodeCshlShortRnaSeqSkmcCellTapContigs SkMC cell TAP C bed 6 SkMC TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 412 0 0 0 127 127 127 0 0 0 expression 1 longLabel SkMC TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel SkMC cell TAP C\ subGroups view=Contigs rep=Pooled cellType=t3SKMC localization=CELL protocol=TAP rank=none\ track wgEncodeCshlShortRnaSeqSkmcCellTapContigs\ type bed 6\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_ctss_rev Tc:iPStoNeuronDs_Day00R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_reverse 0 412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep1.CNhs13835.13457-144H1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13457-144H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_tpm_rev Tc:iPStoNeuronDs_Day00R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_reverse 1 412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep1.CNhs13835.13457-144H1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13457-144H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqMonocd14CellPamJunctions CD14 cel pA- J bed 6 + MonocytesCD14+ whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 413 0 0 0 127 127 127 0 0 0 expression 1 longLabel MonocytesCD14+ whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel CD14 cel pA- J\ subGroups view=Junctions cellType=t2MONOCYTESCD14 localization=CELL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqMonocd14CellPamJunctions\ type bed 6 +\ wgEncodeUwHistoneHeeH3k4me3StdPkRep1 HEE H3K4M3 Pk 1 narrowPeak HEEpIC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 413 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpIC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HEE H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HEEPIC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHeeH3k4me3StdPkRep1\ type narrowPeak\ wgEncodeSydhTfbsHelas3Elk112771IggrabSig HeLa ELK1 IgR bigWig 1.000000 17752.000000 HeLa-S3 ELK1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 413 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 ELK1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa ELK1 IgR\ subGroups view=Signal factor=ELK112771 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Elk112771IggrabSig\ type bigWig 1.000000 17752.000000\ encTfChipPkENCFF449ITJ HepG2 PHB2 narrowPeak Transcription Factor ChIP-seq Peaks of PHB2 in HepG2 from ENCODE 3 (ENCFF449ITJ) 1 413 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of PHB2 in HepG2 from ENCODE 3 (ENCFF449ITJ)\ parent encTfChipPk off\ shortLabel HepG2 PHB2\ subGroups cellType=HepG2 factor=PHB2\ track encTfChipPkENCFF449ITJ\ wgEncodeAwgTfbsSydhHepg2Pol2ForsklnUniPk HepG2+fors POLR2A narrowPeak HepG2 (forskolin) TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis 1 413 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 (forskolin) TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2+fors POLR2A\ subGroups tier=a20 cellType=a20HEPG2 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Pol2ForsklnUniPk\ wgEncodeUwDnaseHrePkRep1V2 HRE Pk 1 narrowPeak HRE DNaseI HS Peaks Rep 1 from ENCODE/UW 1 413 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HRE Pk 1\ subGroups view=Peaks cellType=t3HRE rep=rep1 treatment=None\ track wgEncodeUwDnaseHrePkRep1V2\ type narrowPeak\ wgEncodeBroadHistoneHsmmtEzh239875Sig HSMMtube EZH2 bigWig 0.040000 27443.320312 HSMMtube EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 413 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMMtube EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMMtube EZH2\ subGroups view=Signal factor=EZH239875 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtEzh239875Sig\ type bigWig 0.040000 27443.320312\ wgEncodeHaibTfbsK562NrsfV0416102PkRep2 K562 NRSF V102 2 broadPeak K562 NRSF v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 413 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 NRSF v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 NRSF V102 2\ subGroups view=Peaks factor=NRSF cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562NrsfV0416102PkRep2\ type broadPeak\ wgEncodeRikenCageNhekCytosolPamMinusSignal NHEK cyto pA- - 1 bigWig 0.040000 4464.319824 NHEK cytosol polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 413 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK cytosol polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel NHEK cyto pA- - 1\ subGroups view=MinusRawSignal cellType=t3NHEK localization=cytosol rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageNhekCytosolPamMinusSignal\ type bigWig 0.040000 4464.319824\ wgEncodeCshlShortRnaSeqSkmc9011302CellShorttotalTapMinusRep1 SkMC cell TAP - 1 bigWig 1.000000 31271290.000000 SkMC TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 413 0 0 0 127 127 127 0 0 0 expression 0 longLabel SkMC TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SkMC cell TAP - 1\ subGroups view=MinusSignal cellType=t3SKMC localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqSkmc9011302CellShorttotalTapMinusRep1\ type bigWig 1.000000 31271290.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_ctss_fwd Tc:iPStoNeuronDs_Day00R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_forward 0 413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep2.CNhs14060.13461-144H5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13461-144H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_tpm_fwd Tc:iPStoNeuronDs_Day00R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_forward 1 413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep2.CNhs14060.13461-144H5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13461-144H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqMonocd14CellPamMinusRep1 CD14 cel pA- - 1 bigWig 1.000000 4143578.000000 MonocytesCD14+ whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 414 0 0 0 127 127 127 0 0 0 expression 0 longLabel MonocytesCD14+ whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel CD14 cel pA- - 1\ subGroups view=MinusSignal cellType=t2MONOCYTESCD14 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqMonocd14CellPamMinusRep1\ type bigWig 1.000000 4143578.000000\ wgEncodeUwHistoneHeeH3k4me3StdRawRep1 HEE H3K4M3 Sg 1 bigWig 1.000000 5315.000000 HEEpIC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 414 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEEpIC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HEE H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HEEPIC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHeeH3k4me3StdRawRep1\ type bigWig 1.000000 5315.000000\ wgEncodeSydhTfbsHelas3Elk4UcdPk HeLa ELK4 UCD narrowPeak HeLa-S3 ELK4 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 414 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 ELK4 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa ELK4 UCD\ subGroups view=Peaks factor=ELK4 cellType=t2HELAS3 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Elk4UcdPk\ type narrowPeak\ encTfChipPkENCFF060MLS HepG2 PHF8 narrowPeak Transcription Factor ChIP-seq Peaks of PHF8 in HepG2 from ENCODE 3 (ENCFF060MLS) 1 414 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of PHF8 in HepG2 from ENCODE 3 (ENCFF060MLS)\ parent encTfChipPk off\ shortLabel HepG2 PHF8\ subGroups cellType=HepG2 factor=PHF8\ track encTfChipPkENCFF060MLS\ wgEncodeAwgTfbsUtaHepg2Pol2UniPk HepG2 POLR2A t narrowPeak HepG2 TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis 1 414 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 POLR2A t\ subGroups tier=a20 cellType=a20HEPG2 factor=POLR2A lab=UT-A\ track wgEncodeAwgTfbsUtaHepg2Pol2UniPk\ wgEncodeUwDnaseHreRawRep1 HRE Sg 1 bigWig 1.000000 16747.000000 HRE DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 414 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRE DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HRE Sg 1\ subGroups view=zRSig cellType=t3HRE rep=rep1 treatment=None\ track wgEncodeUwDnaseHreRawRep1\ type bigWig 1.000000 16747.000000\ wgEncodeBroadHistoneHsmmtH2azStdPk HSMMtube H2A.Z broadPeak HSMMtube H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 414 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMMtube H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMMtube H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH2azStdPk\ type broadPeak\ wgEncodeHaibTfbsK562NrsfV0416102RawRep2 K562 NRSF V102 2 bigWig 0.304005 408.506989 K562 NRSF v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 414 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 NRSF v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 NRSF V102 2\ subGroups view=RawSignal factor=NRSF cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562NrsfV0416102RawRep2\ type bigWig 0.304005 408.506989\ wgEncodeRikenCageNhekCytosolPamAln NHEK cyto pA- A 1 bam NHEK cytosol polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN 0 414 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK cytosol polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel NHEK cyto pA- A 1\ subGroups view=Alignments cellType=t3NHEK localization=cytosol rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageNhekCytosolPamAln\ type bam\ wgEncodeCshlShortRnaSeqSkmc812190217CellTapMinusRep2 SkMC cell TAP - 2 bigWig 1.000000 22704648.000000 SkMC TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 414 0 0 0 127 127 127 0 0 0 expression 0 longLabel SkMC TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SkMC cell TAP - 2\ subGroups view=MinusSignal cellType=t3SKMC localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqSkmc812190217CellTapMinusRep2\ type bigWig 1.000000 22704648.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_ctss_rev Tc:iPStoNeuronDs_Day00R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_reverse 0 414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep2.CNhs14060.13461-144H5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13461-144H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_tpm_rev Tc:iPStoNeuronDs_Day00R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_reverse 1 414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep2.CNhs14060.13461-144H5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13461-144H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqMonocd14CellPamMinusRep2 CD14 cel pA- - 2 bigWig 1.000000 2792428.000000 MonocytesCD14+ whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 415 0 0 0 127 127 127 0 0 0 expression 0 longLabel MonocytesCD14+ whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel CD14 cel pA- - 2\ subGroups view=MinusSignal cellType=t2MONOCYTESCD14 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqMonocd14CellPamMinusRep2\ type bigWig 1.000000 2792428.000000\ wgEncodeUwHistoneHeeH3k4me3StdHotspotsRep2 HEE H3K4M3 Ht 2 broadPeak HEEpIC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 415 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpIC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HEE H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HEEPIC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHeeH3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeSydhTfbsHelas3Elk4UcdSig HeLa ELK4 UCD bigWig 0.000000 42205.000000 HeLa-S3 ELK4 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 415 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 ELK4 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa ELK4 UCD\ subGroups view=Signal factor=ELK4 cellType=t2HELAS3 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Elk4UcdSig\ type bigWig 0.000000 42205.000000\ encTfChipPkENCFF948QME HepG2 PLRG1 narrowPeak Transcription Factor ChIP-seq Peaks of PLRG1 in HepG2 from ENCODE 3 (ENCFF948QME) 1 415 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of PLRG1 in HepG2 from ENCODE 3 (ENCFF948QME)\ parent encTfChipPk off\ shortLabel HepG2 PLRG1\ subGroups cellType=HepG2 factor=PLRG1\ track encTfChipPkENCFF948QME\ wgEncodeAwgTfbsSydhHepg2Pgc1aForsklnUniPk HepG2+forsk PGC1A narrowPeak HepG2 (forskolin) TFBS Uniform Peaks of PGC1A from ENCODE/Stanford/Analysis 1 415 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 (forskolin) TFBS Uniform Peaks of PGC1A from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2+forsk PGC1A\ subGroups tier=a20 cellType=a20HEPG2 factor=PPARGC1A lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Pgc1aForsklnUniPk\ wgEncodeUwDnaseHreHotspotsRep2 HRE Ht 2 broadPeak HRE DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 415 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HRE Ht 2\ subGroups view=Hot cellType=t3HRE rep=rep2 treatment=None\ track wgEncodeUwDnaseHreHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneHsmmtH2azStdSig HSMMtube H2A.Z bigWig 0.040000 16899.519531 HSMMtube H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 415 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMMtube H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMMtube H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH2azStdSig\ type bigWig 0.040000 16899.519531\ wgEncodeHaibTfbsK562Pmlsc71910V0422111PkRep1 K562 PML V11 1 broadPeak K562 PML v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 415 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 PML v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 PML V11 1\ subGroups view=Peaks factor=PMLSC71910 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Pmlsc71910V0422111PkRep1\ type broadPeak\ wgEncodeRikenCageNhekCytosolPapTssHmm NHEK cyto pA+ bed 6 NHEK cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 415 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK cytosol polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel NHEK cyto pA+\ subGroups view=TssHmm cellType=t3NHEK localization=cytosol rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageNhekCytosolPapTssHmm\ type bed 6\ wgEncodeCshlShortRnaSeqSkmc9011302CellShorttotalTapPlusRep1 SkMC cell TAP + 1 bigWig 1.000000 3636995.000000 SkMC TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 415 0 0 0 127 127 127 0 0 0 expression 0 longLabel SkMC TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SkMC cell TAP + 1\ subGroups view=PlusSignal cellType=t3SKMC localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqSkmc9011302CellShorttotalTapPlusRep1\ type bigWig 1.000000 3636995.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_ctss_fwd Tc:iPStoNeuronDs_Day00R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_forward 0 415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep3.CNhs14063.13465-144H9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13465-144H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_tpm_fwd Tc:iPStoNeuronDs_Day00R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_forward 1 415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep3.CNhs14063.13465-144H9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13465-144H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqMonocd14CellPamPlusRep1 CD14 cel pA- + 1 bigWig 1.000000 4891235.000000 MonocytesCD14+ whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 416 0 0 0 127 127 127 0 0 0 expression 0 longLabel MonocytesCD14+ whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel CD14 cel pA- + 1\ subGroups view=PlusSignal cellType=t2MONOCYTESCD14 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqMonocd14CellPamPlusRep1\ type bigWig 1.000000 4891235.000000\ wgEncodeUwHistoneHeeH3k4me3StdPkRep2 HEE H3K4M3 Pk 2 narrowPeak HEEpIC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 416 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpIC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HEE H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HEEPIC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHeeH3k4me3StdPkRep2\ type narrowPeak\ wgEncodeSydhTfbsHelas3Gcn5StdPk HeLa GCN5 Std narrowPeak HeLa-S3 GCN5 Standard ChIP-seq Peaks from ENCODE/SYDH 3 416 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 GCN5 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa GCN5 Std\ subGroups view=Peaks factor=GCN5 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Gcn5StdPk\ type narrowPeak\ encTfChipPkENCFF992LSQ HepG2 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in HepG2 from ENCODE 3 (ENCFF992LSQ) 1 416 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in HepG2 from ENCODE 3 (ENCFF992LSQ)\ parent encTfChipPk off\ shortLabel HepG2 POLR2A\ subGroups cellType=HepG2 factor=POLR2A\ track encTfChipPkENCFF992LSQ\ wgEncodeAwgTfbsHaibHepg2Rad21V0416101UniPk HepG2 RAD21 h narrowPeak HepG2 TFBS Uniform Peaks of Rad21 from ENCODE/HudsonAlpha/Analysis 1 416 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of Rad21 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 RAD21 h\ subGroups tier=a20 cellType=a20HEPG2 factor=RAD21 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Rad21V0416101UniPk\ wgEncodeUwDnaseHrePkRep2V2 HRE Pk 2 narrowPeak HRE DNaseI HS Peaks Rep 2 from ENCODE/UW 1 416 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HRE Pk 2\ subGroups view=Peaks cellType=t3HRE rep=rep2 treatment=None\ track wgEncodeUwDnaseHrePkRep2V2\ type narrowPeak\ wgEncodeBroadHistoneHsmmtH3k4me1StdPk HSMMtube H3K4m1 broadPeak HSMMtube H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 416 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMMtube H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMMtube H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k4me1StdPk\ type broadPeak\ wgEncodeHaibTfbsK562Pmlsc71910V0422111RawRep1 K562 PML V11 1 bigWig 0.173781 168.481003 K562 PML v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 416 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 PML v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 PML V11 1\ subGroups view=RawSignal factor=PMLSC71910 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Pmlsc71910V0422111RawRep1\ type bigWig 0.173781 168.481003\ wgEncodeRikenCageNhekCytosolPapPlusSignalRep3 NHEK cyto pA+ + 1 bigWig 0.040000 14094.309570 NHEK cytosol polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN 2 416 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK cytosol polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel NHEK cyto pA+ + 1\ subGroups view=PlusRawSignal cellType=t3NHEK localization=cytosol rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageNhekCytosolPapPlusSignalRep3\ type bigWig 0.040000 14094.309570\ wgEncodeCshlShortRnaSeqSkmc812190217CellTapPlusRep2 SkMC cell TAP + 2 bigWig 1.000000 4412752.000000 SkMC TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 416 0 0 0 127 127 127 0 0 0 expression 0 longLabel SkMC TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SkMC cell TAP + 2\ subGroups view=PlusSignal cellType=t3SKMC localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqSkmc812190217CellTapPlusRep2\ type bigWig 1.000000 4412752.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_ctss_rev Tc:iPStoNeuronDs_Day00R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_reverse 0 416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep3.CNhs14063.13465-144H9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13465-144H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_tpm_rev Tc:iPStoNeuronDs_Day00R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_reverse 1 416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep3.CNhs14063.13465-144H9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13465-144H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqMonocd14CellPamPlusRep2 CD14 cel pA- + 2 bigWig 1.000000 2583502.000000 MonocytesCD14+ whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 417 0 0 0 127 127 127 0 0 0 expression 0 longLabel MonocytesCD14+ whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel CD14 cel pA- + 2\ subGroups view=PlusSignal cellType=t2MONOCYTESCD14 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqMonocd14CellPamPlusRep2\ type bigWig 1.000000 2583502.000000\ wgEncodeUwHistoneHeeH3k4me3StdRawRep2 HEE H3K4M3 Sg 2 bigWig 1.000000 6106.000000 HEEpIC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 417 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEEpIC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HEE H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HEEPIC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHeeH3k4me3StdRawRep2\ type bigWig 1.000000 6106.000000\ wgEncodeSydhTfbsHelas3Gcn5StdSig HeLa GCN5 Std bigWig 1.000000 35639.000000 HeLa-S3 GCN5 Standard ChIP-seq Signal from ENCODE/SYDH 2 417 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 GCN5 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa GCN5 Std\ subGroups view=Signal factor=GCN5 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Gcn5StdSig\ type bigWig 1.000000 35639.000000\ encTfChipPkENCFF259XQC HepG2 POLR2G narrowPeak Transcription Factor ChIP-seq Peaks of POLR2G in HepG2 from ENCODE 3 (ENCFF259XQC) 1 417 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of POLR2G in HepG2 from ENCODE 3 (ENCFF259XQC)\ parent encTfChipPk off\ shortLabel HepG2 POLR2G\ subGroups cellType=HepG2 factor=POLR2G\ track encTfChipPkENCFF259XQC\ wgEncodeAwgTfbsSydhHepg2Rad21IggrabUniPk HepG2 RAD21 s narrowPeak HepG2 TFBS Uniform Peaks of Rad21 from ENCODE/Stanford/Analysis 1 417 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of Rad21 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 RAD21 s\ subGroups tier=a20 cellType=a20HEPG2 factor=RAD21 lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Rad21IggrabUniPk\ wgEncodeUwDnaseHreRawRep2 HRE Sg 2 bigWig 1.000000 12621.000000 HRE DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 417 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRE DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HRE Sg 2\ subGroups view=zRSig cellType=t3HRE rep=rep2 treatment=None\ track wgEncodeUwDnaseHreRawRep2\ type bigWig 1.000000 12621.000000\ wgEncodeBroadHistoneHsmmtH3k4me1StdSig HSMMtube H3K4m1 bigWig 0.040000 6873.759766 HSMMtube H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 417 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMMtube H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMMtube H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k4me1StdSig\ type bigWig 0.040000 6873.759766\ wgEncodeHaibTfbsK562Pmlsc71910V0422111PkRep2 K562 PML V11 2 broadPeak K562 PML v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 417 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 PML v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 PML V11 2\ subGroups view=Peaks factor=PMLSC71910 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Pmlsc71910V0422111PkRep2\ type broadPeak\ wgEncodeRikenCageNhekCytosolPapPlusRawRep4 NHEK cyto pA+ + 2 bigWig 1.000000 110997.000000 NHEK cytosol polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN 2 417 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK cytosol polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel NHEK cyto pA+ + 2\ subGroups view=PlusRawSignal cellType=t3NHEK localization=cytosol rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageNhekCytosolPapPlusRawRep4\ type bigWig 1.000000 110997.000000\ wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapContigs SKRA cell TAP C bed 6 SK-N-SH_RA TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL 2 417 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH_RA TAP-only whole cell small RNA-seq Contigs from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewContigs off\ shortLabel SKRA cell TAP C\ subGroups view=Contigs cellType=t3SKNSHRA localization=CELL protocol=TAP rep=Pooled rank=none\ track wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapContigs\ type bed 6\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_ctss_fwd Tc:iPStoNeuronDs_Day06R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_forward 0 417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep1.CNhs13836.13458-144H2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13458-144H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_tpm_fwd Tc:iPStoNeuronDs_Day06R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_forward 1 417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep1.CNhs13836.13458-144H2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13458-144H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqMonocd14CellPapAlnRep1 CD14 cel pA+ A 1 bam MonocytesCD14+ whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 418 0 0 0 127 127 127 0 0 0 expression 1 longLabel MonocytesCD14+ whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel CD14 cel pA+ A 1\ subGroups view=Alignments cellType=t2MONOCYTESCD14 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqMonocd14CellPapAlnRep1\ type bam\ wgEncodeUwHistoneHeeInputStdRawRep1 HEE In Sg 1 bigWig 1.000000 6633.000000 HEEpIC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 418 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEEpIC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HEE In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HEEPIC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHeeInputStdRawRep1\ type bigWig 1.000000 6633.000000\ wgEncodeSydhTfbsHelas3Gtf2f1ab28179IggrabPk HeLa GT2F IgR narrowPeak HeLa-S3 GTF2F1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 418 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 GTF2F1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa GT2F IgR\ subGroups view=Peaks factor=GTF2F1 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Gtf2f1ab28179IggrabPk\ type narrowPeak\ encTfChipPkENCFF501NHW HepG2 PRPF4 narrowPeak Transcription Factor ChIP-seq Peaks of PRPF4 in HepG2 from ENCODE 3 (ENCFF501NHW) 1 418 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of PRPF4 in HepG2 from ENCODE 3 (ENCFF501NHW)\ parent encTfChipPk off\ shortLabel HepG2 PRPF4\ subGroups cellType=HepG2 factor=PRPF4\ track encTfChipPkENCFF501NHW\ wgEncodeAwgTfbsSydhHepg2Corestsc30189IggrabUniPk HepG2 RCOR1 narrowPeak HepG2 TFBS Uniform Peaks of COREST_(sc-30189) from ENCODE/Stanford/Analysis 1 418 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of COREST_(sc-30189) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 RCOR1\ subGroups tier=a20 cellType=a20HEPG2 factor=RCOR1 lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Corestsc30189IggrabUniPk\ wgEncodeUwDnaseHrgecHotspotsRep1 HRGEC Ht 1 broadPeak HRGEC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 418 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRGEC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HRGEC Ht 1\ subGroups view=Hot cellType=t3HRGEC rep=rep1 treatment=None\ track wgEncodeUwDnaseHrgecHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHsmmtH3k4me2StdPk HSMMtube H3K4m2 broadPeak HSMMtube H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 418 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMMtube H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMMtube H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k4me2StdPk\ type broadPeak\ wgEncodeHaibTfbsK562Pmlsc71910V0422111RawRep2 K562 PML V11 2 bigWig 0.169934 737.216980 K562 PML v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 418 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 PML v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 PML V11 2\ subGroups view=RawSignal factor=PMLSC71910 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Pmlsc71910V0422111RawRep2\ type bigWig 0.169934 737.216980\ wgEncodeRikenCageNhekCytosolPapMinusSignalRep3 NHEK cyto pA+ - 1 bigWig 0.040000 52460.691406 NHEK cytosol polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN 2 418 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK cytosol polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel NHEK cyto pA+ - 1\ subGroups view=MinusRawSignal cellType=t3NHEK localization=cytosol rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageNhekCytosolPapMinusSignalRep3\ type bigWig 0.040000 52460.691406\ wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapMinusRawRep1 SKRA cell TAP - 1 bigWig 1.000000 3043844.000000 SK-N-SH_RA TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 418 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH_RA TAP-only whole cell small RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKRA cell TAP - 1\ subGroups view=MinusSignal cellType=t3SKNSHRA localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapMinusRawRep1\ type bigWig 1.000000 3043844.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_ctss_rev Tc:iPStoNeuronDs_Day06R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_reverse 0 418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep1.CNhs13836.13458-144H2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13458-144H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_tpm_rev Tc:iPStoNeuronDs_Day06R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_reverse 1 418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep1.CNhs13836.13458-144H2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13458-144H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqMonocd14CellPapAlnRep2 CD14 cel pA+ A 2 bam MonocytesCD14+ whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 419 0 0 0 127 127 127 0 0 0 expression 1 longLabel MonocytesCD14+ whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel CD14 cel pA+ A 2\ subGroups view=Alignments cellType=t2MONOCYTESCD14 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqMonocd14CellPapAlnRep2\ type bam\ wgEncodeUwHistoneHek293H3k4me3StdHotspotsRep1 HEK H3K4M3 Ht 1 broadPeak HEK293 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 419 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HEK H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HEK293 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHek293H3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeSydhTfbsHelas3Gtf2f1ab28179IggrabSig HeLa GT2F IgR bigWig 1.000000 10280.000000 HeLa-S3 GTF2F1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 419 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 GTF2F1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa GT2F IgR\ subGroups view=Signal factor=GTF2F1 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Gtf2f1ab28179IggrabSig\ type bigWig 1.000000 10280.000000\ encTfChipPkENCFF908HDA HepG2 PTBP1 narrowPeak Transcription Factor ChIP-seq Peaks of PTBP1 in HepG2 from ENCODE 3 (ENCFF908HDA) 1 419 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of PTBP1 in HepG2 from ENCODE 3 (ENCFF908HDA)\ parent encTfChipPk off\ shortLabel HepG2 PTBP1\ subGroups cellType=HepG2 factor=PTBP1\ track encTfChipPkENCFF908HDA\ wgEncodeAwgTfbsHaibHepg2NrsfPcr2xUniPk HepG2 REST h narrowPeak HepG2 TFBS Uniform Peaks of NRSF (Ptcl:Pcr2x) from ENCODE/HudsonAlpha/Analysis 1 419 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of NRSF (Ptcl:Pcr2x) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 REST h\ subGroups tier=a20 cellType=a20HEPG2 factor=REST lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2NrsfPcr2xUniPk\ wgEncodeUwDnaseHrgecPkRep1 HRGEC Pk 1 narrowPeak HRGEC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 419 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRGEC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HRGEC Pk 1\ subGroups view=Peaks cellType=t3HRGEC rep=rep1 treatment=None\ track wgEncodeUwDnaseHrgecPkRep1\ type narrowPeak\ wgEncodeBroadHistoneHsmmtH3k4me2StdSig HSMMtube H3K4m2 bigWig 0.040000 7831.160156 HSMMtube H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 419 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMMtube H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMMtube H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k4me2StdSig\ type bigWig 0.040000 7831.160156\ wgEncodeHaibTfbsK562Pol2V0416101PkRep1 K562 Pol2 V101 1 broadPeak K562 Pol2 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 419 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Pol2 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 Pol2 V101 1\ subGroups view=Peaks factor=POL2 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Pol2V0416101PkRep1\ type broadPeak\ wgEncodeRikenCageNhekCytosolPapMinusRawRep4 NHEK cyto pA+ - 2 bigWig 1.000000 1032747.000000 NHEK cytosol polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN 2 419 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK cytosol polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel NHEK cyto pA+ - 2\ subGroups view=MinusRawSignal cellType=t3NHEK localization=cytosol rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageNhekCytosolPapMinusRawRep4\ type bigWig 1.000000 1032747.000000\ wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapMinusRawRep2 SKRA cell TAP - 2 bigWig 1.000000 3559664.000000 SK-N-SH_RA TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 419 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH_RA TAP-only whole cell small RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewMinusSignal off\ shortLabel SKRA cell TAP - 2\ subGroups view=MinusSignal cellType=t3SKNSHRA localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapMinusRawRep2\ type bigWig 1.000000 3559664.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_ctss_fwd Tc:iPStoNeuronDs_Day06R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_forward 0 419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep2.CNhs14061.13462-144H6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13462-144H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_tpm_fwd Tc:iPStoNeuronDs_Day06R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_forward 1 419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep2.CNhs14061.13462-144H6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13462-144H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqMonocd14CellPapContigs CD14 cel pA+ C bed 6 + MonocytesCD14+ whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 420 0 0 0 127 127 127 0 0 0 expression 1 longLabel MonocytesCD14+ whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel CD14 cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2MONOCYTESCD14 localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqMonocd14CellPapContigs\ type bed 6 +\ wgEncodeUwHistoneHek293H3k4me3StdPkRep1 HEK H3K4M3 Pk 1 narrowPeak HEK293 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 420 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HEK H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HEK293 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHek293H3k4me3StdPkRep1\ type narrowPeak\ wgEncodeSydhTfbsHelas3Hae2f1StdPk HeLa HAE2 Std narrowPeak HeLa-S3 HA-E2F1 Standard ChIP-seq Peaks from ENCODE/SYDH 3 420 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 HA-E2F1 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa HAE2 Std\ subGroups view=Peaks factor=HAE2F1 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Hae2f1StdPk\ type narrowPeak\ encTfChipPkENCFF584YYH HepG2 RAD21 1 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in HepG2 from ENCODE 3 (ENCFF584YYH) 1 420 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of RAD21 in HepG2 from ENCODE 3 (ENCFF584YYH)\ parent encTfChipPk off\ shortLabel HepG2 RAD21 1\ subGroups cellType=HepG2 factor=RAD21\ track encTfChipPkENCFF584YYH\ wgEncodeAwgTfbsHaibHepg2NrsfV0416101UniPk HepG2 REST h2 narrowPeak HepG2 TFBS Uniform Peaks of NRSF (P:V0415101) from ENCODE/HudsonAlpha/Analysis 1 420 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of NRSF (P:V0415101) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 REST h2\ subGroups tier=a20 cellType=a20HEPG2 factor=REST lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2NrsfV0416101UniPk\ wgEncodeUwDnaseHrgecRawRep1 HRGEC Sg 1 bigWig 1.000000 16233.000000 HRGEC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 420 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRGEC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HRGEC Sg 1\ subGroups view=zRSig cellType=t3HRGEC rep=rep1 treatment=None\ track wgEncodeUwDnaseHrgecRawRep1\ type bigWig 1.000000 16233.000000\ wgEncodeBroadHistoneHsmmtH3k4me3StdPk HSMMtube H3K4m3 broadPeak HSMMtube H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 420 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMMtube H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMMtube H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k4me3StdPk\ type broadPeak\ wgEncodeHaibTfbsK562Pol2V0416101RawRep1 K562 Pol2 V101 1 bigWig 0.143018 618.372009 K562 Pol2 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 420 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Pol2 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 Pol2 V101 1\ subGroups view=RawSignal factor=POL2 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Pol2V0416101RawRep1\ type bigWig 0.143018 618.372009\ wgEncodeRikenCageNhekCytosolPapAlnRep3 NHEK cyto pA+ A 1 bam NHEK cytosol polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN 0 420 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK cytosol polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel NHEK cyto pA+ A 1\ subGroups view=Alignments cellType=t3NHEK localization=cytosol rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageNhekCytosolPapAlnRep3\ type bam\ wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapPlusRawRep1 SKRA cell TAP + 1 bigWig 1.000000 4415282.000000 SK-N-SH_RA TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 420 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH_RA TAP-only whole cell small RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKRA cell TAP + 1\ subGroups view=PlusSignal cellType=t3SKNSHRA localization=CELL protocol=TAP rep=rep1 rank=rank1\ track wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapPlusRawRep1\ type bigWig 1.000000 4415282.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_ctss_rev Tc:iPStoNeuronDs_Day06R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_reverse 0 420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep2.CNhs14061.13462-144H6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13462-144H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_tpm_rev Tc:iPStoNeuronDs_Day06R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_reverse 1 420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep2.CNhs14061.13462-144H6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13462-144H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqMonocd14CellPapJunctions CD14 cel pA+ J bed 6 + MonocytesCD14+ whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 421 0 0 0 127 127 127 0 0 0 expression 1 longLabel MonocytesCD14+ whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel CD14 cel pA+ J\ subGroups view=Junctions cellType=t2MONOCYTESCD14 localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqMonocd14CellPapJunctions\ type bed 6 +\ wgEncodeUwHistoneHek293H3k4me3StdRawRep1 HEK H3K4M3 Sg 1 bigWig 1.000000 5296.000000 HEK293 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 421 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEK293 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HEK H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HEK293 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHek293H3k4me3StdRawRep1\ type bigWig 1.000000 5296.000000\ wgEncodeSydhTfbsHelas3Hae2f1StdSig HeLa HAE2 Std bigWig 0.000000 9980.799805 HeLa-S3 HA-E2F1 Standard ChIP-seq Signal from ENCODE/SYDH 2 421 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 HA-E2F1 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa HAE2 Std\ subGroups view=Signal factor=HAE2F1 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Hae2f1StdSig\ type bigWig 0.000000 9980.799805\ encTfChipPkENCFF072UEX HepG2 RAD21 2 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in HepG2 from ENCODE 3 (ENCFF072UEX) 1 421 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of RAD21 in HepG2 from ENCODE 3 (ENCFF072UEX)\ parent encTfChipPk off\ shortLabel HepG2 RAD21 2\ subGroups cellType=HepG2 factor=RAD21\ track encTfChipPkENCFF072UEX\ wgEncodeAwgTfbsSydhHepg2Rfx5200401194IggrabUniPk HepG2 RFX5 narrowPeak HepG2 TFBS Uniform Peaks of RFX5_(200-401-194) from ENCODE/Stanford/Analysis 1 421 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of RFX5_(200-401-194) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 RFX5\ subGroups tier=a20 cellType=a20HEPG2 factor=RFX5 lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Rfx5200401194IggrabUniPk\ wgEncodeUwDnaseHrgecHotspotsRep2 HRGEC Ht 2 broadPeak HRGEC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 421 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRGEC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HRGEC Ht 2\ subGroups view=Hot cellType=t3HRGEC rep=rep2 treatment=None\ track wgEncodeUwDnaseHrgecHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneHsmmtH3k4me3StdSig HSMMtube H3K4m3 bigWig 0.040000 12015.919922 HSMMtube H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 421 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMMtube H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMMtube H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k4me3StdSig\ type bigWig 0.040000 12015.919922\ wgEncodeHaibTfbsK562Pol2V0416101PkRep2 K562 Pol2 V101 2 broadPeak K562 Pol2 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 421 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Pol2 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 Pol2 V101 2\ subGroups view=Peaks factor=POL2 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Pol2V0416101PkRep2\ type broadPeak\ wgEncodeRikenCageNhekCytosolPapAlnRep4 NHEK cyto pA+ A 2 bam NHEK cytosol polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN 0 421 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK cytosol polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel NHEK cyto pA+ A 2\ subGroups view=Alignments cellType=t3NHEK localization=cytosol rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageNhekCytosolPapAlnRep4\ type bam\ wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapPlusRawRep2 SKRA cell TAP + 2 bigWig 1.000000 5728503.000000 SK-N-SH_RA TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 421 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH_RA TAP-only whole cell small RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlShortRnaSeqViewPlusSignal off\ shortLabel SKRA cell TAP + 2\ subGroups view=PlusSignal cellType=t3SKNSHRA localization=CELL protocol=TAP rep=rep2 rank=rank2\ track wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapPlusRawRep2\ type bigWig 1.000000 5728503.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_ctss_fwd Tc:iPStoNeuronDs_Day06R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_forward 0 421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep3.CNhs14064.13466-144I1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13466-144I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_tpm_fwd Tc:iPStoNeuronDs_Day06R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_forward 1 421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep3.CNhs14064.13466-144I1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13466-144I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqMonocd14CellPapMinusRep1 CD14 cel pA+ - 1 bigWig 1.000000 577352.000000 MonocytesCD14+ whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 422 0 0 0 127 127 127 0 0 0 expression 0 longLabel MonocytesCD14+ whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel CD14 cel pA+ - 1\ subGroups view=MinusSignal cellType=t2MONOCYTESCD14 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqMonocd14CellPapMinusRep1\ type bigWig 1.000000 577352.000000\ wgEncodeUwHistoneHek293H3k4me3StdHotspotsRep2 HEK H3K4M3 Ht 2 broadPeak HEK293 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 422 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HEK H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HEK293 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHek293H3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeSydhTfbsHelas3Hcfc1nb10068209IggrabPk HeLa-S3 HCFC1 IgR narrowPeak HeLa-S3 HCFC1 (NB100-68209) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 422 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 HCFC1 (NB100-68209) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa-S3 HCFC1 IgR\ subGroups view=Peaks factor=HCFC1NB10068209 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Hcfc1nb10068209IggrabPk\ type narrowPeak\ encTfChipPkENCFF681NJT HepG2 RAD51 narrowPeak Transcription Factor ChIP-seq Peaks of RAD51 in HepG2 from ENCODE 3 (ENCFF681NJT) 1 422 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of RAD51 in HepG2 from ENCODE 3 (ENCFF681NJT)\ parent encTfChipPk off\ shortLabel HepG2 RAD51\ subGroups cellType=HepG2 factor=RAD51\ track encTfChipPkENCFF681NJT\ wgEncodeAwgTfbsHaibHepg2RxraPcr1xUniPk HepG2 RXRA narrowPeak HepG2 TFBS Uniform Peaks of RXRA from ENCODE/HudsonAlpha/Analysis 1 422 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of RXRA from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 RXRA\ subGroups tier=a20 cellType=a20HEPG2 factor=RXRA lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2RxraPcr1xUniPk\ wgEncodeUwDnaseHrgecPkRep2 HRGEC Pk 2 narrowPeak HRGEC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 422 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRGEC DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HRGEC Pk 2\ subGroups view=Peaks cellType=t3HRGEC rep=rep2 treatment=None\ track wgEncodeUwDnaseHrgecPkRep2\ type narrowPeak\ wgEncodeBroadHistoneHsmmtH3k9acStdPk HSMMtube H3K9ac broadPeak HSMMtube H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 422 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMMtube H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMMtube H3K9ac\ subGroups view=Peaks factor=H3K09AC cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k9acStdPk\ type broadPeak\ wgEncodeHaibTfbsK562Pol2V0416101RawRep2 K562 Pol2 V101 2 bigWig 0.159452 694.252014 K562 Pol2 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 422 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Pol2 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 Pol2 V101 2\ subGroups view=RawSignal factor=POL2 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Pol2V0416101RawRep2\ type bigWig 0.159452 694.252014\ wgEncodeRikenCageNhekNucleusPamTssHmmV2 NHEK nucl pA- bed 6 NHEK nucleus polyA- CAGE TSS HMM from ENCODE/RIKEN 3 422 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK nucleus polyA- CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel NHEK nucl pA-\ subGroups view=TssHmm cellType=t3NHEK localization=nucleus rnaExtract=pAM rep=rep0 rank=rankP\ track wgEncodeRikenCageNhekNucleusPamTssHmmV2\ type bed 6\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_ctss_rev Tc:iPStoNeuronDs_Day06R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_reverse 0 422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep3.CNhs14064.13466-144I1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13466-144I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_tpm_rev Tc:iPStoNeuronDs_Day06R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_reverse 1 422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep3.CNhs14064.13466-144I1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13466-144I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqMonocd14CellPapMinusRep2 CD14 cel pA+ - 2 bigWig 1.000000 420927.000000 MonocytesCD14+ whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 423 0 0 0 127 127 127 0 0 0 expression 0 longLabel MonocytesCD14+ whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel CD14 cel pA+ - 2\ subGroups view=MinusSignal cellType=t2MONOCYTESCD14 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqMonocd14CellPapMinusRep2\ type bigWig 1.000000 420927.000000\ wgEncodeUwHistoneHek293H3k4me3StdPkRep2 HEK H3K4M3 Pk 2 narrowPeak HEK293 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 423 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HEK H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HEK293 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHek293H3k4me3StdPkRep2\ type narrowPeak\ wgEncodeSydhTfbsHelas3Hcfc1nb10068209IggrabSig HeLa-S3 HCFC1 IgR bigWig 1.000000 496.000000 HeLa-S3 HCFC1 (NB100-68209) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 423 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 HCFC1 (NB100-68209) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa-S3 HCFC1 IgR\ subGroups view=Signal factor=HCFC1NB10068209 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Hcfc1nb10068209IggrabSig\ type bigWig 1.000000 496.000000\ encTfChipPkENCFF663YBI HepG2 RBFOX2 narrowPeak Transcription Factor ChIP-seq Peaks of RBFOX2 in HepG2 from ENCODE 3 (ENCFF663YBI) 1 423 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of RBFOX2 in HepG2 from ENCODE 3 (ENCFF663YBI)\ parent encTfChipPk off\ shortLabel HepG2 RBFOX2\ subGroups cellType=HepG2 factor=RBFOX2\ track encTfChipPkENCFF663YBI\ wgEncodeAwgTfbsHaibHepg2Sin3ak20Pcr1xUniPk HepG2 SIN3AK20 narrowPeak HepG2 TFBS Uniform Peaks of Sin3Ak-20 from ENCODE/HudsonAlpha/Analysis 1 423 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of Sin3Ak-20 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 SIN3AK20\ subGroups tier=a20 cellType=a20HEPG2 factor=SIN3AK20 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Sin3ak20Pcr1xUniPk\ wgEncodeUwDnaseHrgecRawRep2 HRGEC Sg 2 bigWig 1.000000 26335.000000 HRGEC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 423 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRGEC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HRGEC Sg 2\ subGroups view=zRSig cellType=t3HRGEC rep=rep2 treatment=None\ track wgEncodeUwDnaseHrgecRawRep2\ type bigWig 1.000000 26335.000000\ wgEncodeBroadHistoneHsmmtH3k9acStdSig HSMMtube H3K9ac bigWig 0.040000 20191.000000 HSMMtube H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 423 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMMtube H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMMtube H3K9ac\ subGroups view=Signal factor=H3K09AC cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k9acStdSig\ type bigWig 0.040000 20191.000000\ wgEncodeHaibTfbsK562Pol24h8V0416101PkRep1 K562 Pol2-4H8 V101 1 broadPeak K562 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 423 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel K562 Pol2-4H8 V101 1\ subGroups view=Peaks factor=POL24H8 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Pol24h8V0416101PkRep1\ type broadPeak\ wgEncodeRikenCageNhekNucleusPamPlusSignal NHEK nucl pA- + 1 bigWig 0.040000 4464.319824 NHEK nucleus polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 423 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK nucleus polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel NHEK nucl pA- + 1\ subGroups view=PlusRawSignal cellType=t3NHEK localization=nucleus rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageNhekNucleusPamPlusSignal\ type bigWig 0.040000 4464.319824\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_ctss_fwd Tc:iPStoNeuronDs_Day12R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_forward 0 423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep1.CNhs13837.13459-144H3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13459-144H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_tpm_fwd Tc:iPStoNeuronDs_Day12R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_forward 1 423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep1.CNhs13837.13459-144H3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13459-144H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqMonocd14CellPapPlusRep1 CD14 cel pA+ + 1 bigWig 1.000000 240362.000000 MonocytesCD14+ whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 424 0 0 0 127 127 127 0 0 0 expression 0 longLabel MonocytesCD14+ whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel CD14 cel pA+ + 1\ subGroups view=PlusSignal cellType=t2MONOCYTESCD14 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqMonocd14CellPapPlusRep1\ type bigWig 1.000000 240362.000000\ wgEncodeUwHistoneHek293H3k4me3StdRawRep2 HEK H3K4M3 Sg 2 bigWig 1.000000 3272.000000 HEK293 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 424 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEK293 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HEK H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HEK293 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHek293H3k4me3StdRawRep2\ type bigWig 1.000000 3272.000000\ wgEncodeSydhTfbsHelas3Ini1IggmusPk HeLa INI1 IgM narrowPeak HeLa-S3 INI1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 424 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 INI1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa INI1 IgM\ subGroups view=Peaks factor=INI1 cellType=t2HELAS3 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsHelas3Ini1IggmusPk\ type narrowPeak\ encTfChipPkENCFF688VHI HepG2 RBM22 narrowPeak Transcription Factor ChIP-seq Peaks of RBM22 in HepG2 from ENCODE 3 (ENCFF688VHI) 1 424 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of RBM22 in HepG2 from ENCODE 3 (ENCFF688VHI)\ parent encTfChipPk off\ shortLabel HepG2 RBM22\ subGroups cellType=HepG2 factor=RBM22\ track encTfChipPkENCFF688VHI\ wgEncodeAwgTfbsSydhHepg2Smc3ab9263IggrabUniPk HepG2 SMC3 narrowPeak HepG2 TFBS Uniform Peaks of SMC3_(ab9263) from ENCODE/Stanford/Analysis 1 424 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of SMC3_(ab9263) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 SMC3\ subGroups tier=a20 cellType=a20HEPG2 factor=SMC3 lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Smc3ab9263IggrabUniPk\ wgEncodeUwDnaseHrpeHotspotsRep1 HRPEpiC Ht 1 broadPeak HRPEpiC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 424 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRPEpiC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HRPEpiC Ht 1\ subGroups view=Hot cellType=t3HRPEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHrpeHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHsmmtH3k09me3Pk HSMMtube H3K9m3 broadPeak HSMMtube H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 424 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMMtube H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMMtube H3K9m3\ subGroups view=Peaks factor=H3K09ME3 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k09me3Pk\ type broadPeak\ wgEncodeHaibTfbsK562Pol24h8V0416101RawRep1 K562 Pol2-4H8 V101 1 bigWig 0.423911 306.488007 K562 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 424 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel K562 Pol2-4H8 V101 1\ subGroups view=RawSignal factor=POL24H8 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Pol24h8V0416101RawRep1\ type bigWig 0.423911 306.488007\ wgEncodeRikenCageNhekNucleusPamMinusSignal NHEK nucl pA- - 1 bigWig 0.040000 4464.319824 NHEK nucleus polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 424 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK nucleus polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel NHEK nucl pA- - 1\ subGroups view=MinusRawSignal cellType=t3NHEK localization=nucleus rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageNhekNucleusPamMinusSignal\ type bigWig 0.040000 4464.319824\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_ctss_rev Tc:iPStoNeuronDs_Day12R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_reverse 0 424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep1.CNhs13837.13459-144H3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13459-144H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_tpm_rev Tc:iPStoNeuronDs_Day12R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_reverse 1 424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep1.CNhs13837.13459-144H3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13459-144H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqMonocd14CellPapPlusRep2 CD14 cel pA+ + 2 bigWig 1.000000 281379.000000 MonocytesCD14+ whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 425 0 0 0 127 127 127 0 0 0 expression 0 longLabel MonocytesCD14+ whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel CD14 cel pA+ + 2\ subGroups view=PlusSignal cellType=t2MONOCYTESCD14 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqMonocd14CellPapPlusRep2\ type bigWig 1.000000 281379.000000\ wgEncodeUwHistoneHek293InputStdRawRep1 HEK In Sg 1 bigWig 1.000000 8215.000000 HEK293 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 425 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEK293 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HEK In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HEK293 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHek293InputStdRawRep1\ type bigWig 1.000000 8215.000000\ wgEncodeSydhTfbsHelas3Ini1IggmusSig HeLa INI1 IgM bigWig 0.000000 5751.500000 HeLa-S3 INI1 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 425 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 INI1 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa INI1 IgM\ subGroups view=Signal factor=INI1 cellType=t2HELAS3 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsHelas3Ini1IggmusSig\ type bigWig 0.000000 5751.500000\ encTfChipPkENCFF221GWO HepG2 RBM39 narrowPeak Transcription Factor ChIP-seq Peaks of RBM39 in HepG2 from ENCODE 3 (ENCFF221GWO) 1 425 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of RBM39 in HepG2 from ENCODE 3 (ENCFF221GWO)\ parent encTfChipPk off\ shortLabel HepG2 RBM39\ subGroups cellType=HepG2 factor=RBM39\ track encTfChipPkENCFF221GWO\ wgEncodeAwgTfbsHaibHepg2Sp1Pcr1xUniPk HepG2 SP1 narrowPeak HepG2 TFBS Uniform Peaks of SP1 from ENCODE/HudsonAlpha/Analysis 1 425 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of SP1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 SP1\ subGroups tier=a20 cellType=a20HEPG2 factor=SP1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Sp1Pcr1xUniPk\ wgEncodeUwDnaseHrpePkRep1V2 HRPEpiC Pk 1 narrowPeak HRPEpiC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 425 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRPEpiC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HRPEpiC Pk 1\ subGroups view=Peaks cellType=t3HRPEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHrpePkRep1V2\ type narrowPeak\ wgEncodeBroadHistoneHsmmtH3k09me3Sig HSMMtube H3K9m3 bigWig 0.040000 53045.000000 HSMMtube H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 425 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMMtube H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMMtube H3K9m3\ subGroups view=Signal factor=H3K09ME3 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k09me3Sig\ type bigWig 0.040000 53045.000000\ wgEncodeHaibTfbsK562Pol24h8V0416101PkRep2 K562 Pol2-4H8 V101 2 broadPeak K562 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 425 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel K562 Pol2-4H8 V101 2\ subGroups view=Peaks factor=POL24H8 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Pol24h8V0416101PkRep2\ type broadPeak\ wgEncodeRikenCageNhekNucleusPamAln NHEK nucl pA- A 1 bam NHEK nucleus polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN 0 425 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK nucleus polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel NHEK nucl pA- A 1\ subGroups view=Alignments cellType=t3NHEK localization=nucleus rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageNhekNucleusPamAln\ type bam\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_ctss_fwd Tc:iPStoNeuronDs_Day12R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_forward 0 425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep2.CNhs14062.13463-144H7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13463-144H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_tpm_fwd Tc:iPStoNeuronDs_Day12R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_forward 1 425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep2.CNhs14062.13463-144H7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13463-144H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHelas3Irf3IggrabPk HeLa IRF3 IgR narrowPeak HeLa-S3 IRF3 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 426 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 IRF3 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa IRF3 IgR\ subGroups view=Peaks factor=IRF3 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Irf3IggrabPk\ type narrowPeak\ encTfChipPkENCFF706RIA HepG2 RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in HepG2 from ENCODE 3 (ENCFF706RIA) 1 426 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in HepG2 from ENCODE 3 (ENCFF706RIA)\ parent encTfChipPk off\ shortLabel HepG2 RCOR1\ subGroups cellType=HepG2 factor=RCOR1\ track encTfChipPkENCFF706RIA\ wgEncodeAwgTfbsHaibHepg2Sp2V0422111UniPk HepG2 SP2 narrowPeak HepG2 TFBS Uniform Peaks of SP2_(SC-643) from ENCODE/HudsonAlpha/Analysis 1 426 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of SP2_(SC-643) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 SP2\ subGroups tier=a20 cellType=a20HEPG2 factor=SP2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Sp2V0422111UniPk\ wgEncodeUwHistoneHffH3k04me3StdHotspotsRep1 HFF H3K4M3 Ht 1 broadPeak HFF H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 426 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HFF H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HFF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHffH3k04me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseHrpeRawRep1 HRPEpiC Sg 1 bigWig 1.000000 67353.000000 HRPEpiC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 426 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRPEpiC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HRPEpiC Sg 1\ subGroups view=zRSig cellType=t3HRPEPIC rep=rep1 treatment=None\ track wgEncodeUwDnaseHrpeRawRep1\ type bigWig 1.000000 67353.000000\ wgEncodeBroadHistoneHsmmtH3k27acStdPk HSMMtube H3K27ac broadPeak HSMMtube H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 426 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMMtube H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMMtube H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k27acStdPk\ type broadPeak\ wgEncodeHaibTfbsK562Pol24h8V0416101RawRep2 K562 Pol2-4H8 V101 2 bigWig 0.184111 363.113007 K562 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 426 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel K562 Pol2-4H8 V101 2\ subGroups view=RawSignal factor=POL24H8 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Pol24h8V0416101RawRep2\ type bigWig 0.184111 363.113007\ wgEncodeRikenCageNhekNucleusPapTssHmmV3 NHEK nucl pA+ bed 6 NHEK nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 426 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK nucleus polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel NHEK nucl pA+\ subGroups view=TssHmm cellType=t3NHEK localization=nucleus rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageNhekNucleusPapTssHmmV3\ type bed 6\ wgEncodeCshlLongRnaSeqSknshCellPapAlnRep3 SKNSH cel pA+ A 1 bam SK-N-SH whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 426 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel SKNSH cel pA+ A 1\ subGroups view=Alignments cellType=t2SKNSH localization=CELL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqSknshCellPapAlnRep3\ type bam\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_ctss_rev Tc:iPStoNeuronDs_Day12R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_reverse 0 426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep2.CNhs14062.13463-144H7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13463-144H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_tpm_rev Tc:iPStoNeuronDs_Day12R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_reverse 1 426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep2.CNhs14062.13463-144H7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13463-144H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHelas3Irf3IggrabSig HeLa IRF3 IgR bigWig 0.000000 11515.700195 HeLa-S3 IRF3 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 427 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 IRF3 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa IRF3 IgR\ subGroups view=Signal factor=IRF3 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Irf3IggrabSig\ type bigWig 0.000000 11515.700195\ encTfChipPkENCFF153JLK HepG2 REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in HepG2 from ENCODE 3 (ENCFF153JLK) 1 427 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of REST in HepG2 from ENCODE 3 (ENCFF153JLK)\ parent encTfChipPk off\ shortLabel HepG2 REST 1\ subGroups cellType=HepG2 factor=REST\ track encTfChipPkENCFF153JLK\ wgEncodeAwgTfbsSydhHepg2Srebp1InslnUniPk HepG2+insl SREBP1 narrowPeak HepG2 (insulin) TFBS Uniform Peaks of SREBP1 from ENCODE/Stanford/Analysis 1 427 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 (insulin) TFBS Uniform Peaks of SREBP1 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2+insl SREBP1\ subGroups tier=a20 cellType=a20HEPG2 factor=SREBP1 lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Srebp1InslnUniPk\ wgEncodeUwHistoneHffH3k04me3StdPkRep1 HFF H3K4M3 Pk 1 narrowPeak HFF H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 427 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HFF H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HFF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHffH3k04me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseHrpeHotspotsRep2 HRPEpiC Ht 2 broadPeak HRPEpiC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 427 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRPEpiC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HRPEpiC Ht 2\ subGroups view=Hot cellType=t3HRPEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHrpeHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneHsmmtH3k27acStdSig HSMMtube H3K27ac bigWig 0.040000 3866.080078 HSMMtube H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 427 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMMtube H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMMtube H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k27acStdSig\ type bigWig 0.040000 3866.080078\ wgEncodeHaibTfbsK562Pu1Pcr1xPkRep1 K562 PU.1 PCR1 1 broadPeak K562 PU.1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 427 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 PU.1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 PU.1 PCR1 1\ subGroups view=Peaks factor=PU1 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Pu1Pcr1xPkRep1\ type broadPeak\ wgEncodeRikenCageNhekNucleusPapPlusSignalRep3 NHEK nucl pA+ + 1 bigWig 0.060000 60221.328125 NHEK nucleus polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN 2 427 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK nucleus polyA+ CAGE Plus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel NHEK nucl pA+ + 1\ subGroups view=PlusRawSignal cellType=t3NHEK localization=nucleus rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageNhekNucleusPapPlusSignalRep3\ type bigWig 0.060000 60221.328125\ wgEncodeCshlLongRnaSeqSknshCellPapAlnRep4 SKNSH cel pA+ A 2 bam SK-N-SH whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 427 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel SKNSH cel pA+ A 2\ subGroups view=Alignments cellType=t2SKNSH localization=CELL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqSknshCellPapAlnRep4\ type bam\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_ctss_fwd Tc:iPStoNeuronDs_Day12R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_forward 0 427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep3.CNhs14065.13467-144I2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13467-144I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_tpm_fwd Tc:iPStoNeuronDs_Day12R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_forward 1 427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep3.CNhs14065.13467-144I2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13467-144I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHelas3JundIggrabPk HeLa JunD IgR narrowPeak HeLa-S3 JunD IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 428 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 JunD IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa JunD IgR\ subGroups view=Peaks factor=JUND cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3JundIggrabPk\ type narrowPeak\ encTfChipPkENCFF854KPC HepG2 REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in HepG2 from ENCODE 3 (ENCFF854KPC) 1 428 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of REST in HepG2 from ENCODE 3 (ENCFF854KPC)\ parent encTfChipPk off\ shortLabel HepG2 REST 2\ subGroups cellType=HepG2 factor=REST\ track encTfChipPkENCFF854KPC\ wgEncodeAwgTfbsHaibHepg2SrfV0416101UniPk HepG2 SRF narrowPeak HepG2 TFBS Uniform Peaks of SRF from ENCODE/HudsonAlpha/Analysis 1 428 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of SRF from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 SRF\ subGroups tier=a20 cellType=a20HEPG2 factor=SRF lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2SrfV0416101UniPk\ wgEncodeUwHistoneHffH3k04me3StdRawRep1 HFF H3K4M3 Sg 1 bigWig 1.000000 1782.000000 HFF H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 428 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HFF H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HFF H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HFF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHffH3k04me3StdRawRep1\ type bigWig 1.000000 1782.000000\ wgEncodeUwDnaseHrpePkRep2V2 HRPEpiC Pk 2 narrowPeak HRPEpiC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 428 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRPEpiC DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HRPEpiC Pk 2\ subGroups view=Peaks cellType=t3HRPEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHrpePkRep2V2\ type narrowPeak\ wgEncodeBroadHistoneHsmmtH3k27me3Pk HSMMtube H3K27m3 broadPeak HSMMtube H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 428 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMMtube H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMMtube H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k27me3Pk\ type broadPeak\ wgEncodeHaibTfbsK562Pu1Pcr1xRawRep1 K562 PU.1 PCR1 1 bigWig 0.170098 173.626999 K562 PU.1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 428 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 PU.1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 PU.1 PCR1 1\ subGroups view=RawSignal factor=PU1 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Pu1Pcr1xRawRep1\ type bigWig 0.170098 173.626999\ wgEncodeRikenCageNhekNucleusPapPlusRawRep4 NHEK nucl pA+ + 4 bigWig 1.000000 244479.000000 NHEK nucleus polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN 2 428 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK nucleus polyA+ CAGE Plus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel NHEK nucl pA+ + 4\ subGroups view=PlusRawSignal cellType=t3NHEK localization=nucleus rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageNhekNucleusPapPlusRawRep4\ type bigWig 1.000000 244479.000000\ wgEncodeCshlLongRnaSeqSknshCellPapContigs SKNSH cel pA+ C bed 6 + SK-N-SH whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 428 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel SKNSH cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2SKNSH localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqSknshCellPapContigs\ type bed 6 +\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_ctss_rev Tc:iPStoNeuronDs_Day12R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_reverse 0 428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep3.CNhs14065.13467-144I2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13467-144I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_tpm_rev Tc:iPStoNeuronDs_Day12R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_reverse 1 428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep3.CNhs14065.13467-144I2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13467-144I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHelas3JundIggrabSig HeLa JunD IgR bigWig 0.000000 7203.799805 HeLa-S3 JunD IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 429 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 JunD IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa JunD IgR\ subGroups view=Signal factor=JUND cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3JundIggrabSig\ type bigWig 0.000000 7203.799805\ encTfChipPkENCFF507RHE HepG2 RFX1 narrowPeak Transcription Factor ChIP-seq Peaks of RFX1 in HepG2 from ENCODE 3 (ENCFF507RHE) 1 429 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of RFX1 in HepG2 from ENCODE 3 (ENCFF507RHE)\ parent encTfChipPk off\ shortLabel HepG2 RFX1\ subGroups cellType=HepG2 factor=RFX1\ track encTfChipPkENCFF507RHE\ wgEncodeAwgTfbsHaibHepg2Taf1Pcr2xUniPk HepG2 TAF1 narrowPeak HepG2 TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis 1 429 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 TAF1\ subGroups tier=a20 cellType=a20HEPG2 factor=TAF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Taf1Pcr2xUniPk\ wgEncodeUwHistoneHffInputStdRawRep1 HFF In Sg 1 bigWig 1.000000 19349.000000 HFF Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 429 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HFF Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HFF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HFF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHffInputStdRawRep1\ type bigWig 1.000000 19349.000000\ wgEncodeUwDnaseHrpeRawRep2 HRPEpiC Sg 2 bigWig 1.000000 41590.000000 HRPEpiC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 429 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRPEpiC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HRPEpiC Sg 2\ subGroups view=zRSig cellType=t3HRPEPIC rep=rep2 treatment=None\ track wgEncodeUwDnaseHrpeRawRep2\ type bigWig 1.000000 41590.000000\ wgEncodeBroadHistoneHsmmtH3k27me3Sig HSMMtube H3K27m3 bigWig 0.040000 22241.240234 HSMMtube H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 429 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMMtube H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMMtube H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k27me3Sig\ type bigWig 0.040000 22241.240234\ wgEncodeHaibTfbsK562Pu1Pcr1xPkRep2 K562 PU.1 PCR1 2 broadPeak K562 PU.1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 429 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 PU.1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 PU.1 PCR1 2\ subGroups view=Peaks factor=PU1 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Pu1Pcr1xPkRep2\ type broadPeak\ wgEncodeRikenCageNhekNucleusPapMinusSignalRep3 NHEK nucl pA+ - 1 bigWig 0.060000 13293.459961 NHEK nucleus polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN 2 429 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK nucleus polyA+ CAGE Minus start sites Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel NHEK nucl pA+ - 1\ subGroups view=MinusRawSignal cellType=t3NHEK localization=nucleus rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageNhekNucleusPapMinusSignalRep3\ type bigWig 0.060000 13293.459961\ wgEncodeCshlLongRnaSeqSknshCellPapJunctions SKNSH cel pA+ J bed 6 + SK-N-SH whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 429 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel SKNSH cel pA+ J\ subGroups view=Junctions cellType=t2SKNSH localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqSknshCellPapJunctions\ type bed 6 +\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_ctss_fwd Tc:iPStoNeuronDs_Day18R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_forward 0 429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep1.CNhs13838.13460-144H4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13460-144H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_tpm_fwd Tc:iPStoNeuronDs_Day18R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_forward 1 429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep1.CNhs13838.13460-144H4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13460-144H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHelas3MafkIggrabPk HeLa MafK IgR narrowPeak HeLa-S3 MafK IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 430 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 MafK IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa MafK IgR\ subGroups view=Peaks factor=MAFK cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3MafkIggrabPk\ type narrowPeak\ encTfChipPkENCFF933GHY HepG2 RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in HepG2 from ENCODE 3 (ENCFF933GHY) 1 430 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of RFX5 in HepG2 from ENCODE 3 (ENCFF933GHY)\ parent encTfChipPk off\ shortLabel HepG2 RFX5\ subGroups cellType=HepG2 factor=RFX5\ track encTfChipPkENCFF933GHY\ wgEncodeAwgTfbsSydhHepg2TbpIggrabUniPk HepG2 TBP narrowPeak HepG2 TFBS Uniform Peaks of TBP from ENCODE/Stanford/Analysis 1 430 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of TBP from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 TBP\ subGroups tier=a20 cellType=a20HEPG2 factor=TBP lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2TbpIggrabUniPk\ wgEncodeUwHistoneHffmycH3k04me3StdHotspotsRep1 HFMc H3K4M3 Ht 1 broadPeak HFFMyc H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 430 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFFMyc H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HFMc H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HFFMYC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHffmycH3k04me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseHsmmHotspotsRep1 HSMM Ht 1 broadPeak HSMM DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 430 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMM DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HSMM Ht 1\ subGroups view=Hot cellType=t3HSMM rep=rep1 treatment=None\ track wgEncodeUwDnaseHsmmHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHsmmtH3k36me3StdPk HSMMtube H3K36m3 broadPeak HSMMtube H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 430 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMMtube H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMMtube H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k36me3StdPk\ type broadPeak\ wgEncodeHaibTfbsK562Pu1Pcr1xRawRep2 K562 PU.1 PCR1 2 bigWig 0.196996 172.419998 K562 PU.1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 430 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 PU.1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 PU.1 PCR1 2\ subGroups view=RawSignal factor=PU1 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Pu1Pcr1xRawRep2\ type bigWig 0.196996 172.419998\ wgEncodeRikenCageNhekNucleusPapMinusRawRep4 NHEK nucl pA+ - 4 bigWig 1.000000 780929.000000 NHEK nucleus polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN 2 430 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK nucleus polyA+ CAGE Minus start sites Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel NHEK nucl pA+ - 4\ subGroups view=MinusRawSignal cellType=t3NHEK localization=nucleus rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageNhekNucleusPapMinusRawRep4\ type bigWig 1.000000 780929.000000\ wgEncodeCshlLongRnaSeqSknshCellPapMinusRep3 SKNSH cel pA+ - 1 bigWig 1.000000 662709.000000 SK-N-SH whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 430 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel SKNSH cel pA+ - 1\ subGroups view=MinusSignal cellType=t2SKNSH localization=CELL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqSknshCellPapMinusRep3\ type bigWig 1.000000 662709.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_ctss_rev Tc:iPStoNeuronDs_Day18R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_reverse 0 430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep1.CNhs13838.13460-144H4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13460-144H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_tpm_rev Tc:iPStoNeuronDs_Day18R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_reverse 1 430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep1.CNhs13838.13460-144H4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13460-144H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHelas3MafkIggrabSig HeLa MafK IgR bigWig 1.000000 17539.000000 HeLa-S3 MafK IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 431 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 MafK IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa MafK IgR\ subGroups view=Signal factor=MAFK cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3MafkIggrabSig\ type bigWig 1.000000 17539.000000\ encTfChipPkENCFF355ARZ HepG2 RNF2 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in HepG2 from ENCODE 3 (ENCFF355ARZ) 1 431 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in HepG2 from ENCODE 3 (ENCFF355ARZ)\ parent encTfChipPk off\ shortLabel HepG2 RNF2\ subGroups cellType=HepG2 factor=RNF2\ track encTfChipPkENCFF355ARZ\ wgEncodeAwgTfbsHaibHepg2Tcf12Pcr1xUniPk HepG2 TCF12 narrowPeak HepG2 TFBS Uniform Peaks of TCF12 from ENCODE/HudsonAlpha/Analysis 1 431 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of TCF12 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 TCF12\ subGroups tier=a20 cellType=a20HEPG2 factor=TCF12 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Tcf12Pcr1xUniPk\ wgEncodeUwHistoneHffmycH3k04me3StdPkRep1 HFMc H3K4M3 Pk 1 narrowPeak HFFMyc H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 431 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFFMyc H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HFMc H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HFFMYC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHffmycH3k04me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseHsmmPkRep1 HSMM Pk 1 narrowPeak HSMM DNaseI HS Peaks Rep 1 from ENCODE/UW 1 431 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMM DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HSMM Pk 1\ subGroups view=Peaks cellType=t3HSMM rep=rep1 treatment=None\ track wgEncodeUwDnaseHsmmPkRep1\ type narrowPeak\ wgEncodeBroadHistoneHsmmtH3k36me3StdSig HSMMtube H3K36m3 bigWig 0.040000 15984.040039 HSMMtube H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 431 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMMtube H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMMtube H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k36me3StdSig\ type bigWig 0.040000 15984.040039\ wgEncodeHaibTfbsK562Rad21V0416102PkRep1 K562 RAD21 V102 1 broadPeak K562 RAD21 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 431 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 RAD21 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 RAD21 V102 1\ subGroups view=Peaks factor=RAD21 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Rad21V0416102PkRep1\ type broadPeak\ wgEncodeRikenCageNhekNucleusPapAlnRep3 NHEK nucl pA+ A 1 bam NHEK nucleus polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN 0 431 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK nucleus polyA+ CAGE Alignments Rep 3 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel NHEK nucl pA+ A 1\ subGroups view=Alignments cellType=t3NHEK localization=nucleus rnaExtract=pAP rep=rep3 rank=rank1\ track wgEncodeRikenCageNhekNucleusPapAlnRep3\ type bam\ wgEncodeCshlLongRnaSeqSknshCellPapMinusRep4 SKNSH cel pA+ - 2 bigWig 1.000000 236639.000000 SK-N-SH whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 431 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel SKNSH cel pA+ - 2\ subGroups view=MinusSignal cellType=t2SKNSH localization=CELL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqSknshCellPapMinusRep4\ type bigWig 1.000000 236639.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_ctss_fwd Tc:iPStoNeuronDs_Day18R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_forward 0 431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep2.CNhs13922.13464-144H8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13464-144H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_tpm_fwd Tc:iPStoNeuronDs_Day18R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_forward 1 431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep2.CNhs13922.13464-144H8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13464-144H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHelas3MaxIggrabPk HeLa Max IgR narrowPeak HeLa-S3 Max IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 432 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 Max IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa Max IgR\ subGroups view=Peaks factor=MAX cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3MaxIggrabPk\ type narrowPeak\ encTfChipPkENCFF964JXI HepG2 RXRA narrowPeak Transcription Factor ChIP-seq Peaks of RXRA in HepG2 from ENCODE 3 (ENCFF964JXI) 1 432 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of RXRA in HepG2 from ENCODE 3 (ENCFF964JXI)\ parent encTfChipPk off\ shortLabel HepG2 RXRA\ subGroups cellType=HepG2 factor=RXRA\ track encTfChipPkENCFF964JXI\ wgEncodeAwgTfbsSydhHepg2Tcf7l2UcdUniPk HepG2 TCF7L2 narrowPeak HepG2 TFBS Uniform Peaks of TCF7L2 from ENCODE/USC/Analysis 1 432 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of TCF7L2 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 TCF7L2\ subGroups tier=a20 cellType=a20HEPG2 factor=TCF7L2 lab=USC\ track wgEncodeAwgTfbsSydhHepg2Tcf7l2UcdUniPk\ wgEncodeUwHistoneHffmycH3k04me3StdRawRep1 HFMc H3K4M3 Sg 1 bigWig 1.000000 1382.000000 HFFMyc H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 432 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HFFMyc H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HFMc H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HFFMYC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHffmycH3k04me3StdRawRep1\ type bigWig 1.000000 1382.000000\ wgEncodeUwDnaseHsmmRawRep1 HSMM Sg 1 bigWig 1.000000 36464.000000 HSMM DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 432 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HSMM DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HSMM Sg 1\ subGroups view=zRSig cellType=t3HSMM rep=rep1 treatment=None\ track wgEncodeUwDnaseHsmmRawRep1\ type bigWig 1.000000 36464.000000\ wgEncodeBroadHistoneHsmmtH3k79me2StdPk HSMMtube H3K79m2 broadPeak HSMMtube H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 432 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMMtube H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMMtube H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k79me2StdPk\ type broadPeak\ wgEncodeHaibTfbsK562Rad21V0416102RawRep1 K562 RAD21 V102 1 bigWig 0.420938 304.022003 K562 RAD21 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 432 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 RAD21 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 RAD21 V102 1\ subGroups view=RawSignal factor=RAD21 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Rad21V0416102RawRep1\ type bigWig 0.420938 304.022003\ wgEncodeRikenCageNhekNucleusPapAlnRep4 NHEK nucl pA+ A 4 bam NHEK nucleus polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN 0 432 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK nucleus polyA+ CAGE Alignments Rep 4 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel NHEK nucl pA+ A 4\ subGroups view=Alignments cellType=t3NHEK localization=nucleus rnaExtract=pAP rep=rep4 rank=rank2\ track wgEncodeRikenCageNhekNucleusPapAlnRep4\ type bam\ wgEncodeCshlLongRnaSeqSknshCellPapPlusRep3 SKNSH cel pA+ + 1 bigWig 1.000000 724140.000000 SK-N-SH whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 432 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel SKNSH cel pA+ + 1\ subGroups view=PlusSignal cellType=t2SKNSH localization=CELL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqSknshCellPapPlusRep3\ type bigWig 1.000000 724140.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_ctss_rev Tc:iPStoNeuronDs_Day18R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_reverse 0 432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep2.CNhs13922.13464-144H8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13464-144H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_tpm_rev Tc:iPStoNeuronDs_Day18R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_reverse 1 432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep2.CNhs13922.13464-144H8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13464-144H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHelas3MaxIggrabSig HeLa Max IgR bigWig 1.000000 17741.000000 HeLa-S3 Max IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 433 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Max IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa Max IgR\ subGroups view=Signal factor=MAX cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3MaxIggrabSig\ type bigWig 1.000000 17741.000000\ encTfChipPkENCFF786HHN HepG2 SIN3A narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in HepG2 from ENCODE 3 (ENCFF786HHN) 1 433 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in HepG2 from ENCODE 3 (ENCFF786HHN)\ parent encTfChipPk off\ shortLabel HepG2 SIN3A\ subGroups cellType=HepG2 factor=SIN3A\ track encTfChipPkENCFF786HHN\ wgEncodeAwgTfbsHaibHepg2Tead4sc101184V0422111UniPk HepG2 TEAD4 narrowPeak HepG2 TFBS Uniform Peaks of TEAD4_(SC-101184) from ENCODE/HudsonAlpha/Analysis 1 433 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of TEAD4_(SC-101184) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 TEAD4\ subGroups tier=a20 cellType=a20HEPG2 factor=TEAD4 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Tead4sc101184V0422111UniPk\ wgEncodeUwHistoneHffmycH3k04me3StdHotspotsRep2 HFMc H3K4M3 Ht 2 broadPeak HFFMyc H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 433 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFFMyc H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HFMc H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HFFMYC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHffmycH3k04me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseHsmmHotspotsRep2 HSMM Ht 2 broadPeak HSMM DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 433 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMM DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HSMM Ht 2\ subGroups view=Hot cellType=t3HSMM rep=rep2 treatment=None\ track wgEncodeUwDnaseHsmmHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneHsmmtH3k79me2StdSig HSMMtube H3K79m2 bigWig 0.040000 10657.519531 HSMMtube H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 433 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMMtube H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMMtube H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH3k79me2StdSig\ type bigWig 0.040000 10657.519531\ wgEncodeHaibTfbsK562Rad21V0416102PkRep2 K562 RAD21 V102 2 broadPeak K562 RAD21 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 433 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 RAD21 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 RAD21 V102 2\ subGroups view=Peaks factor=RAD21 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Rad21V0416102PkRep2\ type broadPeak\ wgEncodeRikenCageNhekCellPapTssHmm NHEK cell pA+ bed 6 NHEK whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 433 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel NHEK cell pA+\ subGroups view=TssHmm cellType=t3NHEK localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageNhekCellPapTssHmm\ type bed 6\ wgEncodeCshlLongRnaSeqSknshCellPapPlusRep4 SKNSH cel pA+ + 2 bigWig 1.000000 665967.000000 SK-N-SH whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 433 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel SKNSH cel pA+ + 2\ subGroups view=PlusSignal cellType=t2SKNSH localization=CELL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqSknshCellPapPlusRep4\ type bigWig 1.000000 665967.000000\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_ctss_fwd Tc:iPStoNeuronDs_Day18R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_forward 0 433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep3.CNhs14066.13468-144I3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13468-144I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_tpm_fwd Tc:iPStoNeuronDs_Day18R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_forward 1 433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep3.CNhs14066.13468-144I3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13468-144I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHelas3MaxStdPk HeLa Max Std narrowPeak HeLa-S3 Max Standard ChIP-seq Peaks from ENCODE/SYDH 3 434 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 Max Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa Max Std\ subGroups view=Peaks factor=MAX cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3MaxStdPk\ type narrowPeak\ encTfChipPkENCFF812UZP HepG2 SIN3B narrowPeak Transcription Factor ChIP-seq Peaks of SIN3B in HepG2 from ENCODE 3 (ENCFF812UZP) 1 434 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of SIN3B in HepG2 from ENCODE 3 (ENCFF812UZP)\ parent encTfChipPk off\ shortLabel HepG2 SIN3B\ subGroups cellType=HepG2 factor=SIN3B\ track encTfChipPkENCFF812UZP\ wgEncodeAwgTfbsHaibHepg2Usf1Pcr1xUniPk HepG2 USF1 narrowPeak HepG2 TFBS Uniform Peaks of USF-1 from ENCODE/HudsonAlpha/Analysis 1 434 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of USF-1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 USF1\ subGroups tier=a20 cellType=a20HEPG2 factor=USF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Usf1Pcr1xUniPk\ wgEncodeUwHistoneHffmycH3k04me3StdPkRep2 HFMc H3K4M3 Pk 2 narrowPeak HFFMyc H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 434 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFFMyc H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HFMc H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HFFMYC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHffmycH3k04me3StdPkRep2\ type narrowPeak\ wgEncodeUwDnaseHsmmPkRep2 HSMM Pk 2 narrowPeak HSMM DNaseI HS Peaks Rep 2 from ENCODE/UW 1 434 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMM DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HSMM Pk 2\ subGroups view=Peaks cellType=t3HSMM rep=rep2 treatment=None\ track wgEncodeUwDnaseHsmmPkRep2\ type narrowPeak\ wgEncodeBroadHistoneHsmmtH4k20me1StdPk HSMMtube H4K20m1 broadPeak HSMMtube H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 434 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HSMMtube H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel HSMMtube H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH4k20me1StdPk\ type broadPeak\ wgEncodeHaibTfbsK562Rad21V0416102RawRep2 K562 RAD21 V102 2 bigWig 0.412112 143.723999 K562 RAD21 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 434 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 RAD21 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 RAD21 V102 2\ subGroups view=RawSignal factor=RAD21 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Rad21V0416102RawRep2\ type bigWig 0.412112 143.723999\ wgEncodeRikenCageNhekCellPapPlusSignalRep1 NHEK cell pA+ + 1 bigWig 0.040000 19261.259766 NHEK whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 434 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel NHEK cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3NHEK localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageNhekCellPapPlusSignalRep1\ type bigWig 0.040000 19261.259766\ wgEncodeCshlLongRnaSeqSknshCytosolPapAlnRep3 SKNSH cyt pA+ A 1 bam SK-N-SH cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 434 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel SKNSH cyt pA+ A 1\ subGroups view=Alignments cellType=t2SKNSH localization=CYTOSOL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqSknshCytosolPapAlnRep3\ type bam\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_ctss_rev Tc:iPStoNeuronDs_Day18R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_reverse 0 434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep3.CNhs14066.13468-144I3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13468-144I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_tpm_rev Tc:iPStoNeuronDs_Day18R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_reverse 1 434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep3.CNhs14066.13468-144I3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13468-144I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHelas3MaxStdSig HeLa Max Std bigWig 0.000000 6232.600098 HeLa-S3 Max Standard ChIP-seq Signal from ENCODE/SYDH 2 435 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Max Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa Max Std\ subGroups view=Signal factor=MAX cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3MaxStdSig\ type bigWig 0.000000 6232.600098\ encTfChipPkENCFF363QMG HepG2 SKI narrowPeak Transcription Factor ChIP-seq Peaks of SKI in HepG2 from ENCODE 3 (ENCFF363QMG) 1 435 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of SKI in HepG2 from ENCODE 3 (ENCFF363QMG)\ parent encTfChipPk off\ shortLabel HepG2 SKI\ subGroups cellType=HepG2 factor=SKI\ track encTfChipPkENCFF363QMG\ wgEncodeAwgTfbsSydhHepg2Usf2IggrabUniPk HepG2 USF2 narrowPeak HepG2 TFBS Uniform Peaks of USF2 from ENCODE/Stanford/Analysis 1 435 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of USF2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 USF2\ subGroups tier=a20 cellType=a20HEPG2 factor=USF2 lab=Stanford\ track wgEncodeAwgTfbsSydhHepg2Usf2IggrabUniPk\ wgEncodeUwHistoneHffmycH3k04me3StdRawRep2 HFMc H3K4M3 Sg 2 bigWig 1.000000 1836.000000 HFFMyc H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 435 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HFFMyc H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HFMc H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HFFMYC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHffmycH3k04me3StdRawRep2\ type bigWig 1.000000 1836.000000\ wgEncodeUwDnaseHsmmRawRep2 HSMM Sg 2 bigWig 1.000000 52039.000000 HSMM DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 435 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HSMM DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HSMM Sg 2\ subGroups view=zRSig cellType=t3HSMM rep=rep2 treatment=None\ track wgEncodeUwDnaseHsmmRawRep2\ type bigWig 1.000000 52039.000000\ wgEncodeBroadHistoneHsmmtH4k20me1StdSig HSMMtube H4K20m1 bigWig 0.040000 16533.359375 HSMMtube H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 435 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMMtube H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMMtube H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtH4k20me1StdSig\ type bigWig 0.040000 16533.359375\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_forward 0 435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep1.CNhs14045.13421-144D1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13421-144D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_forward 1 435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep1.CNhs14045.13421-144D1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13421-144D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Sin3ak20V0416101PkRep1 K562 Sin3A V101 1 broadPeak K562 Sin3Ak-20 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 435 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Sin3Ak-20 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 Sin3A V101 1\ subGroups view=Peaks factor=SIN3AK20 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Sin3ak20V0416101PkRep1\ type broadPeak\ wgEncodeRikenCageNhekCellPapPlusSignalRep2 NHEK cell pA+ + 2 bigWig 0.040000 16078.389648 NHEK whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 435 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel NHEK cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3NHEK localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageNhekCellPapPlusSignalRep2\ type bigWig 0.040000 16078.389648\ wgEncodeCshlLongRnaSeqSknshCytosolPapAlnRep4 SKNSH cyt pA+ A 2 bam SK-N-SH cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 435 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel SKNSH cyt pA+ A 2\ subGroups view=Alignments cellType=t2SKNSH localization=CYTOSOL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqSknshCytosolPapAlnRep4\ type bam\ wgEncodeSydhTfbsHelas3Mazab85725IggrabPk HeLa MAZ IgR narrowPeak HeLa-S3 MAZ IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 436 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 MAZ IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa MAZ IgR\ subGroups view=Peaks factor=MAZAB85725 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Mazab85725IggrabPk\ type narrowPeak\ encTfChipPkENCFF038MCY HepG2 SMARCC2 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCC2 in HepG2 from ENCODE 3 (ENCFF038MCY) 1 436 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of SMARCC2 in HepG2 from ENCODE 3 (ENCFF038MCY)\ parent encTfChipPk off\ shortLabel HepG2 SMARCC2\ subGroups cellType=HepG2 factor=SMARCC2\ track encTfChipPkENCFF038MCY\ wgEncodeAwgTfbsHaibHepg2Yy1sc281V0416101UniPk HepG2 YY1 narrowPeak HepG2 TFBS Uniform Peaks of YY1_(SC-281) from ENCODE/HudsonAlpha/Analysis 1 436 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of YY1_(SC-281) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 YY1\ subGroups tier=a20 cellType=a20HEPG2 factor=YY1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Yy1sc281V0416101UniPk\ wgEncodeUwHistoneHffmycInputStdRawRep1 HFMc In Sg 1 bigWig 1.000000 18402.000000 HFFMyc Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 436 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HFFMyc Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HFMc In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HFFMYC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHffmycInputStdRawRep1\ type bigWig 1.000000 18402.000000\ wgEncodeUwDnaseHsmmtHotspotsRep1 HSMMtube Ht 1 broadPeak HSMMtube DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 436 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMMtube DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HSMMtube Ht 1\ subGroups view=Hot cellType=t3HSMMTUBE rep=rep1 treatment=None\ track wgEncodeUwDnaseHsmmtHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneHsmmtControlStdSig HSMMtube Input bigWig 0.040000 44143.320312 HSMMtube Input Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 436 0 0 0 127 127 127 1 0 0 regulation 0 longLabel HSMMtube Input Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel HSMMtube Input\ subGroups view=Signal factor=zCTRL cellType=t3HSMMTUBE treatment=zNONE\ track wgEncodeBroadHistoneHsmmtControlStdSig\ type bigWig 0.040000 44143.320312\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_reverse 0 436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep1.CNhs14045.13421-144D1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13421-144D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_reverse 1 436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep1.CNhs14045.13421-144D1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13421-144D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Sin3ak20V0416101RawRep1 K562 Sin3A V101 1 bigWig 0.158863 235.634003 K562 Sin3Ak-20 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 436 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Sin3Ak-20 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 Sin3A V101 1\ subGroups view=RawSignal factor=SIN3AK20 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Sin3ak20V0416101RawRep1\ type bigWig 0.158863 235.634003\ wgEncodeRikenCageNhekCellPapMinusSignalRep1 NHEK cell pA+ - 1 bigWig 0.040000 28717.580078 NHEK whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 436 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel NHEK cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3NHEK localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageNhekCellPapMinusSignalRep1\ type bigWig 0.040000 28717.580078\ wgEncodeCshlLongRnaSeqSknshCytosolPapContigs SKNSH cyt pA+ C bed 6 + SK-N-SH cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 436 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel SKNSH cyt pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2SKNSH localization=CYTOSOL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqSknshCytosolPapContigs\ type bed 6 +\ wgEncodeSydhTfbsHelas3Mazab85725IggrabSig HeLa MAZ IgR bigWig 1.000000 13215.000000 HeLa-S3 MAZ IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 437 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 MAZ IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa MAZ IgR\ subGroups view=Signal factor=MAZAB85725 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Mazab85725IggrabSig\ type bigWig 1.000000 13215.000000\ encTfChipPkENCFF743GXH HepG2 SMARCE1 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCE1 in HepG2 from ENCODE 3 (ENCFF743GXH) 1 437 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of SMARCE1 in HepG2 from ENCODE 3 (ENCFF743GXH)\ parent encTfChipPk off\ shortLabel HepG2 SMARCE1\ subGroups cellType=HepG2 factor=SMARCE1\ track encTfChipPkENCFF743GXH\ wgEncodeAwgTfbsHaibHepg2Zbtb33Pcr1xUniPk HepG2 ZBTB33 narrowPeak HepG2 TFBS Uniform Peaks of ZBTB33 from ENCODE/HudsonAlpha/Analysis 1 437 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of ZBTB33 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 ZBTB33\ subGroups tier=a20 cellType=a20HEPG2 factor=ZBTB33 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Zbtb33Pcr1xUniPk\ wgEncodeUwHistoneHl60H3k4me3StdHotspotsRep1 HL-60 H3K4M3 Ht 1 broadPeak HL-60 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 437 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HL-60 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HL60 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHl60H3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseHsmmtPkRep1 HSMMtube Pk 1 narrowPeak HSMMtube DNaseI HS Peaks Rep 1 from ENCODE/UW 1 437 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMMtube DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HSMMtube Pk 1\ subGroups view=Peaks cellType=t3HSMMTUBE rep=rep1 treatment=None\ track wgEncodeUwDnaseHsmmtPkRep1\ type narrowPeak\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_forward 0 437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep2.CNhs13822.13425-144D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13425-144D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_forward 1 437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep2.CNhs13822.13425-144D5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13425-144D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Sin3ak20V0416101PkRep2 K562 Sin3A V101 2 broadPeak K562 Sin3Ak-20 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 437 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 Sin3Ak-20 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 Sin3A V101 2\ subGroups view=Peaks factor=SIN3AK20 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Sin3ak20V0416101PkRep2\ type broadPeak\ wgEncodeBroadHistoneNhaCtcfStdPk NH-A CTCF broadPeak NH-A CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 437 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NH-A CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NH-A CTCF\ subGroups view=Peaks factor=CTCF cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaCtcfStdPk\ type broadPeak\ wgEncodeRikenCageNhekCellPapMinusSignalRep2 NHEK cell pA+ - 2 bigWig 0.040000 43836.941406 NHEK whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 437 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel NHEK cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3NHEK localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageNhekCellPapMinusSignalRep2\ type bigWig 0.040000 43836.941406\ wgEncodeCshlLongRnaSeqSknshCytosolPapJunctions SKNSH cyt pA+ J bed 6 + SK-N-SH cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 437 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel SKNSH cyt pA+ J\ subGroups view=Junctions cellType=t2SKNSH localization=CYTOSOL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqSknshCytosolPapJunctions\ type bed 6 +\ wgEncodeSydhTfbsHelas3Mxi1af4185IggrabPk HeLa Mxi1 IgR narrowPeak HeLa-S3 Mxi1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 438 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 Mxi1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa Mxi1 IgR\ subGroups view=Peaks factor=MXI1 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Mxi1af4185IggrabPk\ type narrowPeak\ encTfChipPkENCFF525EJQ HepG2 SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in HepG2 from ENCODE 3 (ENCFF525EJQ) 1 438 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of SMC3 in HepG2 from ENCODE 3 (ENCFF525EJQ)\ parent encTfChipPk off\ shortLabel HepG2 SMC3\ subGroups cellType=HepG2 factor=SMC3\ track encTfChipPkENCFF525EJQ\ wgEncodeAwgTfbsHaibHepg2Zbtb7aV0416101UniPk HepG2 ZBTB7A narrowPeak HepG2 TFBS Uniform Peaks of ZBTB7A_(SC-34508) from ENCODE/HudsonAlpha/Analysis 1 438 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of ZBTB7A_(SC-34508) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 ZBTB7A\ subGroups tier=a20 cellType=a20HEPG2 factor=ZBTB7A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHepg2Zbtb7aV0416101UniPk\ wgEncodeUwHistoneHl60H3k4me3StdPkRep1 HL-60 H3K4M3 Pk 1 narrowPeak HL-60 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 438 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HL-60 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HL60 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHl60H3k4me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseHsmmtRawRep1 HSMMtube Sg 1 bigWig 1.000000 21954.000000 HSMMtube DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 438 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HSMMtube DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HSMMtube Sg 1\ subGroups view=zRSig cellType=t3HSMMTUBE rep=rep1 treatment=None\ track wgEncodeUwDnaseHsmmtRawRep1\ type bigWig 1.000000 21954.000000\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_reverse 0 438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep2.CNhs13822.13425-144D5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13425-144D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_reverse 1 438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep2.CNhs13822.13425-144D5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13425-144D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Sin3ak20V0416101RawRep2 K562 Sin3A V101 2 bigWig 0.130746 436.070007 K562 Sin3Ak-20 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 438 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Sin3Ak-20 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 Sin3A V101 2\ subGroups view=RawSignal factor=SIN3AK20 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Sin3ak20V0416101RawRep2\ type bigWig 0.130746 436.070007\ wgEncodeBroadHistoneNhaCtcfStdSig NH-A CTCF bigWig 0.040000 15242.480469 NH-A CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 438 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NH-A CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NH-A CTCF\ subGroups view=Signal factor=CTCF cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaCtcfStdSig\ type bigWig 0.040000 15242.480469\ wgEncodeRikenCageNhekCellPapAlnRep1 NHEK cell pA+ A 1 bam NHEK whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 438 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel NHEK cell pA+ A 1\ subGroups view=Alignments cellType=t3NHEK localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageNhekCellPapAlnRep1\ type bam\ wgEncodeCshlLongRnaSeqSknshCytosolPapMinusRep3 SKNSH cyt pA+ - 1 bigWig 1.000000 777524.000000 SK-N-SH cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 438 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel SKNSH cyt pA+ - 1\ subGroups view=MinusSignal cellType=t2SKNSH localization=CYTOSOL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqSknshCytosolPapMinusRep3\ type bigWig 1.000000 777524.000000\ wgEncodeSydhTfbsHelas3Mxi1af4185IggrabSig HeLa Mxi1 IgR bigWig 1.000000 10659.000000 HeLa-S3 Mxi1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 439 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Mxi1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa Mxi1 IgR\ subGroups view=Signal factor=MXI1 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Mxi1af4185IggrabSig\ type bigWig 1.000000 10659.000000\ encTfChipPkENCFF337FIU HepG2 SNRNP70 narrowPeak Transcription Factor ChIP-seq Peaks of SNRNP70 in HepG2 from ENCODE 3 (ENCFF337FIU) 1 439 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of SNRNP70 in HepG2 from ENCODE 3 (ENCFF337FIU)\ parent encTfChipPk off\ shortLabel HepG2 SNRNP70\ subGroups cellType=HepG2 factor=SNRNP70\ track encTfChipPkENCFF337FIU\ wgEncodeAwgTfbsSydhHepg2Znf274UcdUniPk HepG2 ZNF274 narrowPeak HepG2 TFBS Uniform Peaks of ZNF274 from ENCODE/USC/Analysis 1 439 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TFBS Uniform Peaks of ZNF274 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HepG2 ZNF274\ subGroups tier=a20 cellType=a20HEPG2 factor=ZNF274 lab=USC\ track wgEncodeAwgTfbsSydhHepg2Znf274UcdUniPk\ wgEncodeUwHistoneHl60H3k4me3StdRawRep1 HL-60 H3K4M3 Sg 1 bigWig 1.000000 1515.000000 HL-60 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 439 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HL-60 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HL-60 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HL60 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHl60H3k4me3StdRawRep1\ type bigWig 1.000000 1515.000000\ wgEncodeUwDnaseHsmmtHotspotsRep2 HSMMtube Ht 2 broadPeak HSMMtube DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 439 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMMtube DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HSMMtube Ht 2\ subGroups view=Hot cellType=t3HSMMTUBE rep=rep2 treatment=None\ track wgEncodeUwDnaseHsmmtHotspotsRep2\ type broadPeak\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_forward 0 439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep3.CNhs14049.13429-144D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13429-144D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_forward 1 439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep3.CNhs14049.13429-144D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13429-144D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Six5Pcr1xPkRep1 K562 SIX5 PCR1 1 broadPeak K562 SIX5 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 439 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 SIX5 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 SIX5 PCR1 1\ subGroups view=Peaks factor=SIX5 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Six5Pcr1xPkRep1\ type broadPeak\ wgEncodeBroadHistoneNhaEzh239875Pk NH-A EZH2 broadPeak NH-A EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 439 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NH-A EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NH-A EZH2\ subGroups view=Peaks factor=EZH239875 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaEzh239875Pk\ type broadPeak\ wgEncodeRikenCageNhekCellPapAlnRep2 NHEK cell pA+ A 2 bam NHEK whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 439 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel NHEK cell pA+ A 2\ subGroups view=Alignments cellType=t3NHEK localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageNhekCellPapAlnRep2\ type bam\ wgEncodeCshlLongRnaSeqSknshCytosolPapMinusRep4 SKNSH cyt pA+ - 2 bigWig 1.000000 1082381.000000 SK-N-SH cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 439 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel SKNSH cyt pA+ - 2\ subGroups view=MinusSignal cellType=t2SKNSH localization=CYTOSOL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqSknshCytosolPapMinusRep4\ type bigWig 1.000000 1082381.000000\ wgEncodeSydhTfbsHelas3NfyaIggrabPk HeLa NYA IgR narrowPeak HeLa-S3 NF-YA IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 440 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 NF-YA IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa NYA IgR\ subGroups view=Peaks factor=NFYA cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3NfyaIggrabPk\ type narrowPeak\ encTfChipPkENCFF132BFM HepG2 SOX13 narrowPeak Transcription Factor ChIP-seq Peaks of SOX13 in HepG2 from ENCODE 3 (ENCFF132BFM) 1 440 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of SOX13 in HepG2 from ENCODE 3 (ENCFF132BFM)\ parent encTfChipPk off\ shortLabel HepG2 SOX13\ subGroups cellType=HepG2 factor=SOX13\ track encTfChipPkENCFF132BFM\ wgEncodeUwHistoneHl60H3k4me3StdHotspotsRep2 HL-60 H3K4M3 Ht 2 broadPeak HL-60 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 440 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HL-60 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HL60 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHl60H3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseHsmmtPkRep2 HSMMtube Pk 2 narrowPeak HSMMtube DNaseI HS Peaks Rep 2 from ENCODE/UW 1 440 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMMtube DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HSMMtube Pk 2\ subGroups view=Peaks cellType=t3HSMMTUBE rep=rep2 treatment=None\ track wgEncodeUwDnaseHsmmtPkRep2\ type narrowPeak\ wgEncodeAwgTfbsBroadHuvecCtcfUniPk HUVEC CTCF b narrowPeak HUVEC TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis 1 440 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HUVEC CTCF b\ subGroups tier=a20 cellType=a20HUVEC factor=CTCF lab=Broad\ track wgEncodeAwgTfbsBroadHuvecCtcfUniPk\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_reverse 0 440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep3.CNhs14049.13429-144D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13429-144D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_reverse 1 440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep3.CNhs14049.13429-144D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13429-144D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Six5Pcr1xRawRep1 K562 SIX5 PCR1 1 bigWig 0.180333 244.307007 K562 SIX5 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 440 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 SIX5 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 SIX5 PCR1 1\ subGroups view=RawSignal factor=SIX5 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Six5Pcr1xRawRep1\ type bigWig 0.180333 244.307007\ wgEncodeBroadHistoneNhaEzh239875Sig NH-A EZH2 bigWig 0.040000 20735.720703 NH-A EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 440 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NH-A EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NH-A EZH2\ subGroups view=Signal factor=EZH239875 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaEzh239875Sig\ type bigWig 0.040000 20735.720703\ wgEncodeRikenCageNhemfm2CellPapTssHmm NHEf cell pA+ bed 6 NHEM.f M2 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 440 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHEM.f M2 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel NHEf cell pA+\ subGroups view=TssHmm cellType=t3NHEMFM2 localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageNhemfm2CellPapTssHmm\ type bed 6\ wgEncodeCshlLongRnaSeqSknshCytosolPapPlusRep3 SKNSH cyt pA+ + 1 bigWig 1.000000 1357547.000000 SK-N-SH cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 440 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel SKNSH cyt pA+ + 1\ subGroups view=PlusSignal cellType=t2SKNSH localization=CYTOSOL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqSknshCytosolPapPlusRep3\ type bigWig 1.000000 1357547.000000\ wgEncodeSydhTfbsHelas3NfyaIggrabSig HeLa NYA IgR bigWig 1.000000 6823.000000 HeLa-S3 NF-YA IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 441 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 NF-YA IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa NYA IgR\ subGroups view=Signal factor=NFYA cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3NfyaIggrabSig\ type bigWig 1.000000 6823.000000\ encTfChipPkENCFF432DIT HepG2 SOX6 narrowPeak Transcription Factor ChIP-seq Peaks of SOX6 in HepG2 from ENCODE 3 (ENCFF432DIT) 1 441 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of SOX6 in HepG2 from ENCODE 3 (ENCFF432DIT)\ parent encTfChipPk off\ shortLabel HepG2 SOX6\ subGroups cellType=HepG2 factor=SOX6\ track encTfChipPkENCFF432DIT\ wgEncodeUwHistoneHl60H3k4me3StdPkRep2 HL-60 H3K4M3 Pk 2 narrowPeak HL-60 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 441 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HL-60 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HL60 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHl60H3k4me3StdPkRep2\ type narrowPeak\ wgEncodeUwDnaseHsmmtRawRep2 HSMMtube Sg 2 bigWig 1.000000 33969.000000 HSMMtube DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 441 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HSMMtube DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HSMMtube Sg 2\ subGroups view=zRSig cellType=t3HSMMTUBE rep=rep2 treatment=None\ track wgEncodeUwDnaseHsmmtRawRep2\ type bigWig 1.000000 33969.000000\ wgEncodeAwgTfbsUtaHuvecCtcfUniPk HUVEC CTCF t narrowPeak HUVEC TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 441 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel HUVEC CTCF t\ subGroups tier=a20 cellType=a20HUVEC factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaHuvecCtcfUniPk\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_forward 0 441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep1.CNhs14046.13422-144D2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13422-144D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_forward 1 441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep1.CNhs14046.13422-144D2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13422-144D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Six5Pcr1xPkRep2 K562 SIX5 PCR1 2 broadPeak K562 SIX5 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 441 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 SIX5 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 SIX5 PCR1 2\ subGroups view=Peaks factor=SIX5 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Six5Pcr1xPkRep2\ type broadPeak\ wgEncodeBroadHistoneNhaH2azPk NH-A H2A.Z broadPeak NH-A H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 441 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NH-A H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NH-A H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH2azPk\ type broadPeak\ wgEncodeRikenCageNhemfm2CellPapPlusRawRep1 NHEf cell pA+ + 1 bigWig 1.000000 292095.000000 NHEM.f M2 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 441 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM.f M2 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel NHEf cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3NHEMFM2 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageNhemfm2CellPapPlusRawRep1\ type bigWig 1.000000 292095.000000\ wgEncodeCshlLongRnaSeqSknshCytosolPapPlusRep4 SKNSH cyt pA+ + 2 bigWig 1.000000 1847796.000000 SK-N-SH cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 441 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel SKNSH cyt pA+ + 2\ subGroups view=PlusSignal cellType=t2SKNSH localization=CYTOSOL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqSknshCytosolPapPlusRep4\ type bigWig 1.000000 1847796.000000\ wgEncodeSydhTfbsHelas3NfybIggrabPk HeLa NYB IgR narrowPeak HeLa-S3 NF-YB IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 442 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 NF-YB IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa NYB IgR\ subGroups view=Peaks factor=NFYB cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3NfybIggrabPk\ type narrowPeak\ encTfChipPkENCFF741WKY HepG2 SP1 1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in HepG2 from ENCODE 3 (ENCFF741WKY) 1 442 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of SP1 in HepG2 from ENCODE 3 (ENCFF741WKY)\ parent encTfChipPk on\ shortLabel HepG2 SP1 1\ subGroups cellType=HepG2 factor=SP1\ track encTfChipPkENCFF741WKY\ wgEncodeUwHistoneHl60H3k4me3StdRawRep2 HL-60 H3K4M3 Sg 2 bigWig 1.000000 1752.000000 HL-60 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 442 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HL-60 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HL-60 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HL60 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHl60H3k4me3StdRawRep2\ type bigWig 1.000000 1752.000000\ wgEncodeAwgTfbsUwHuvecCtcfUniPk HUVEC CTCF w narrowPeak HUVEC TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 442 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HUVEC CTCF w\ subGroups tier=a20 cellType=a20HUVEC factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHuvecCtcfUniPk\ wgEncodeUwDnaseHvmfHotspotsRep1 HVMF Ht 1 broadPeak HVMF DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 442 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HVMF DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HVMF Ht 1\ subGroups view=Hot cellType=t3HVMF rep=rep1 treatment=None\ track wgEncodeUwDnaseHvmfHotspotsRep1\ type broadPeak\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_reverse 0 442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep1.CNhs14046.13422-144D2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13422-144D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_reverse 1 442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep1.CNhs14046.13422-144D2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13422-144D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Six5Pcr1xRawRep2 K562 SIX5 PCR1 2 bigWig 0.180118 235.235001 K562 SIX5 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 442 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 SIX5 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 SIX5 PCR1 2\ subGroups view=RawSignal factor=SIX5 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Six5Pcr1xRawRep2\ type bigWig 0.180118 235.235001\ wgEncodeBroadHistoneNhaH2azSig NH-A H2A.Z bigWig 0.040000 14172.599609 NH-A H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 442 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NH-A H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NH-A H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH2azSig\ type bigWig 0.040000 14172.599609\ wgEncodeRikenCageNhemfm2CellPapPlusRawRep2 NHEf cell pA+ + 2 bigWig 1.000000 1081250.000000 NHEM.f M2 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 442 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM.f M2 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel NHEf cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3NHEMFM2 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageNhemfm2CellPapPlusRawRep2\ type bigWig 1.000000 1081250.000000\ wgEncodeCshlLongRnaSeqSknshNucleusPapAlnRep3 SKNSH nuc pA+ A 1 bam SK-N-SH nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 442 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel SKNSH nuc pA+ A 1\ subGroups view=Alignments cellType=t2SKNSH localization=NUCLEUS rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqSknshNucleusPapAlnRep3\ type bam\ wgEncodeSydhTfbsHelas3NfybIggrabSig HeLa NYB IgR bigWig 1.000000 8659.000000 HeLa-S3 NF-YB IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 443 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 NF-YB IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa NYB IgR\ subGroups view=Signal factor=NFYB cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3NfybIggrabSig\ type bigWig 1.000000 8659.000000\ encTfChipPkENCFF573ALP HepG2 SP1 2 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in HepG2 from ENCODE 3 (ENCFF573ALP) 1 443 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of SP1 in HepG2 from ENCODE 3 (ENCFF573ALP)\ parent encTfChipPk off\ shortLabel HepG2 SP1 2\ subGroups cellType=HepG2 factor=SP1\ track encTfChipPkENCFF573ALP\ wgEncodeUwHistoneHl60InputStdRawRep1 HL-60 In Sg 1 bigWig 1.000000 9223.000000 HL-60 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 443 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HL-60 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HL-60 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HL60 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHl60InputStdRawRep1\ type bigWig 1.000000 9223.000000\ wgEncodeAwgTfbsBroadHuvecEzh239875UniPk HUVEC EZH2 narrowPeak HUVEC TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis 1 443 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HUVEC EZH2\ subGroups tier=a20 cellType=a20HUVEC factor=EZH2 lab=Broad\ track wgEncodeAwgTfbsBroadHuvecEzh239875UniPk\ wgEncodeUwDnaseHvmfPkRep1 HVMF Pk 1 narrowPeak HVMF DNaseI HS Peaks Rep 1 from ENCODE/UW 1 443 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HVMF DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HVMF Pk 1\ subGroups view=Peaks cellType=t3HVMF rep=rep1 treatment=None\ track wgEncodeUwDnaseHvmfPkRep1\ type narrowPeak\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_forward 0 443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep2.CNhs13823.13426-144D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13426-144D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_forward 1 443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep2.CNhs13823.13426-144D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13426-144D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Six5V0416101PkRep1 K562 SIX5 V101 1 broadPeak K562 SIX5 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 443 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 SIX5 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 SIX5 V101 1\ subGroups view=Peaks factor=SIX5 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Six5V0416101PkRep1\ type broadPeak\ wgEncodeBroadHistoneNhaH3k4me1StdPk NH-A H3K4m1 broadPeak NH-A H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 443 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NH-A H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NH-A H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k4me1StdPk\ type broadPeak\ wgEncodeRikenCageNhemfm2CellPapMinusRawRep1 NHEf cell pA+ - 1 bigWig 1.000000 231182.000000 NHEM.f M2 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 443 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM.f M2 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel NHEf cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3NHEMFM2 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageNhemfm2CellPapMinusRawRep1\ type bigWig 1.000000 231182.000000\ wgEncodeCshlLongRnaSeqSknshNucleusPapAlnRep4 SKNSH nuc pA+ A 2 bam SK-N-SH nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 443 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel SKNSH nuc pA+ A 2\ subGroups view=Alignments cellType=t2SKNSH localization=NUCLEUS rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqSknshNucleusPapAlnRep4\ type bam\ wgEncodeSydhTfbsHelas3Nrf1IggmusPk HeLa Nrf1 IgM narrowPeak HeLa-S3 Nrf1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 444 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 Nrf1 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa Nrf1 IgM\ subGroups view=Peaks factor=NRF1 cellType=t2HELAS3 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsHelas3Nrf1IggmusPk\ type narrowPeak\ encTfChipPkENCFF479TZM HepG2 SRSF4 narrowPeak Transcription Factor ChIP-seq Peaks of SRSF4 in HepG2 from ENCODE 3 (ENCFF479TZM) 1 444 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of SRSF4 in HepG2 from ENCODE 3 (ENCFF479TZM)\ parent encTfChipPk off\ shortLabel HepG2 SRSF4\ subGroups cellType=HepG2 factor=SRSF4\ track encTfChipPkENCFF479TZM\ wgEncodeUwHistoneHmecH3k4me3StdHotspotsRep1 HMEC H3K4M3 Ht 1 broadPeak HMEC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 444 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HMEC H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HMEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHmecH3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeAwgTfbsSydhHuvecCfosUcdUniPk HUVEC FOS narrowPeak HUVEC TFBS Uniform Peaks of c-Fos from ENCODE/USC/Analysis 1 444 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC TFBS Uniform Peaks of c-Fos from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel HUVEC FOS\ subGroups tier=a20 cellType=a20HUVEC factor=FOS lab=USC\ track wgEncodeAwgTfbsSydhHuvecCfosUcdUniPk\ wgEncodeUwDnaseHvmfRawRep1 HVMF Sg 1 bigWig 1.000000 13045.000000 HVMF DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 444 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HVMF DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HVMF Sg 1\ subGroups view=zRSig cellType=t3HVMF rep=rep1 treatment=None\ track wgEncodeUwDnaseHvmfRawRep1\ type bigWig 1.000000 13045.000000\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_reverse 0 444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep2.CNhs13823.13426-144D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13426-144D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_reverse 1 444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep2.CNhs13823.13426-144D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13426-144D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Six5V0416101RawRep1 K562 SIX5 V101 1 bigWig 0.175326 165.201004 K562 SIX5 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 444 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 SIX5 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 SIX5 V101 1\ subGroups view=RawSignal factor=SIX5 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Six5V0416101RawRep1\ type bigWig 0.175326 165.201004\ wgEncodeBroadHistoneNhaH3k4me1StdSig NH-A H3K4m1 bigWig 0.040000 7228.799805 NH-A H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 444 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NH-A H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NH-A H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k4me1StdSig\ type bigWig 0.040000 7228.799805\ wgEncodeRikenCageNhemfm2CellPapMinusRawRep2 NHEf cell pA+ - 2 bigWig 1.000000 555229.000000 NHEM.f M2 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 444 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM.f M2 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel NHEf cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3NHEMFM2 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageNhemfm2CellPapMinusRawRep2\ type bigWig 1.000000 555229.000000\ wgEncodeCshlLongRnaSeqSknshNucleusPapContigs SKNSH nuc pA+ C bed 6 + SK-N-SH nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 444 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel SKNSH nuc pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t2SKNSH localization=NUCLEUS rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqSknshNucleusPapContigs\ type bed 6 +\ wgEncodeSydhTfbsHelas3Nrf1IggmusSig HeLa Nrf1 IgM bigWig 0.000000 9296.200195 HeLa-S3 Nrf1 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 445 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Nrf1 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa Nrf1 IgM\ subGroups view=Signal factor=NRF1 cellType=t2HELAS3 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsHelas3Nrf1IggmusSig\ type bigWig 0.000000 9296.200195\ encTfChipPkENCFF868WXR HepG2 SRSF9 narrowPeak Transcription Factor ChIP-seq Peaks of SRSF9 in HepG2 from ENCODE 3 (ENCFF868WXR) 1 445 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of SRSF9 in HepG2 from ENCODE 3 (ENCFF868WXR)\ parent encTfChipPk off\ shortLabel HepG2 SRSF9\ subGroups cellType=HepG2 factor=SRSF9\ track encTfChipPkENCFF868WXR\ wgEncodeUwHistoneHmecH3k4me3StdPkRep1 HMEC H3K4M3 Pk 1 narrowPeak HMEC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 445 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HMEC H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HMEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHmecH3k4me3StdPkRep1\ type narrowPeak\ wgEncodeAwgTfbsSydhHuvecGata2UcdUniPk HUVEC GATA2 narrowPeak HUVEC TFBS Uniform Peaks of GATA-2 from ENCODE/USC/Analysis 1 445 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC TFBS Uniform Peaks of GATA-2 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HUVEC GATA2\ subGroups tier=a20 cellType=a20HUVEC factor=GATA2 lab=USC\ track wgEncodeAwgTfbsSydhHuvecGata2UcdUniPk\ wgEncodeUwDnaseHvmfHotspotsRep2 HVMF Ht 2 broadPeak HVMF DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 445 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HVMF DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel HVMF Ht 2\ subGroups view=Hot cellType=t3HVMF rep=rep2 treatment=None\ track wgEncodeUwDnaseHvmfHotspotsRep2\ type broadPeak\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_forward 0 445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep3.CNhs14050.13430-144E1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13430-144E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_forward 1 445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep3.CNhs14050.13430-144E1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13430-144E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Six5V0416101PkRep2 K562 SIX5 V101 2 broadPeak K562 SIX5 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 445 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 SIX5 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 SIX5 V101 2\ subGroups view=Peaks factor=SIX5 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Six5V0416101PkRep2\ type broadPeak\ wgEncodeBroadHistoneNhaH3k04me2Pk NH-A H3K4m2 broadPeak NH-A H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 445 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NH-A H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NH-A H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k04me2Pk\ type broadPeak\ wgEncodeRikenCageNhemfm2CellPapAlnRep1 NHEf cell pA+ A 1 bam NHEM.f M2 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 445 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHEM.f M2 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel NHEf cell pA+ A 1\ subGroups view=Alignments cellType=t3NHEMFM2 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageNhemfm2CellPapAlnRep1\ type bam\ wgEncodeCshlLongRnaSeqSknshNucleusPapJunctions SKNSH nuc pA+ J bed 6 + SK-N-SH nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 445 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel SKNSH nuc pA+ J\ subGroups view=Junctions cellType=t2SKNSH localization=NUCLEUS rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqSknshNucleusPapJunctions\ type bed 6 +\ wgEncodeSydhTfbsHelas3P300sc584sc584IggrabPk HeLa p300 IgR narrowPeak HeLa-S3 p300 SC584 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 446 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 p300 SC584 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa p300 IgR\ subGroups view=Peaks factor=P300SC584 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3P300sc584sc584IggrabPk\ type narrowPeak\ encTfChipPkENCFF086LMU HepG2 SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in HepG2 from ENCODE 3 (ENCFF086LMU) 1 446 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in HepG2 from ENCODE 3 (ENCFF086LMU)\ parent encTfChipPk off\ shortLabel HepG2 SUZ12\ subGroups cellType=HepG2 factor=SUZ12\ track encTfChipPkENCFF086LMU\ wgEncodeUwHistoneHmecH3k4me3StdRawRep1 HMEC H3K4M3 Sg 1 bigWig 1.000000 2345.000000 HMEC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 446 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMEC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HMEC H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HMEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHmecH3k4me3StdRawRep1\ type bigWig 1.000000 2345.000000\ wgEncodeAwgTfbsSydhHuvecCjunUniPk HUVEC JUN narrowPeak HUVEC TFBS Uniform Peaks of c-Jun from ENCODE/Stanford/Analysis 1 446 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC TFBS Uniform Peaks of c-Jun from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HUVEC JUN\ subGroups tier=a20 cellType=a20HUVEC factor=JUN lab=Stanford\ track wgEncodeAwgTfbsSydhHuvecCjunUniPk\ wgEncodeUwDnaseHvmfPkRep2 HVMF Pk 2 narrowPeak HVMF DNaseI HS Peaks Rep 2 from ENCODE/UW 1 446 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HVMF DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel HVMF Pk 2\ subGroups view=Peaks cellType=t3HVMF rep=rep2 treatment=None\ track wgEncodeUwDnaseHvmfPkRep2\ type narrowPeak\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_reverse 0 446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep3.CNhs14050.13430-144E1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13430-144E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_reverse 1 446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep3.CNhs14050.13430-144E1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13430-144E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Six5V0416101RawRep2 K562 SIX5 V101 2 bigWig 0.464710 182.281998 K562 SIX5 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 446 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 SIX5 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 SIX5 V101 2\ subGroups view=RawSignal factor=SIX5 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Six5V0416101RawRep2\ type bigWig 0.464710 182.281998\ wgEncodeBroadHistoneNhaH3k04me2Sig NH-A H3K4m2 bigWig 0.040000 11772.839844 NH-A H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 446 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NH-A H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NH-A H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k04me2Sig\ type bigWig 0.040000 11772.839844\ wgEncodeRikenCageNhemfm2CellPapAlnRep2 NHEf cell pA+ A 2 bam NHEM.f M2 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 446 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHEM.f M2 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel NHEf cell pA+ A 2\ subGroups view=Alignments cellType=t3NHEMFM2 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageNhemfm2CellPapAlnRep2\ type bam\ wgEncodeCshlLongRnaSeqSknshNucleusPapMinusRep3 SKNSH nuc pA+ - 1 bigWig 1.000000 158821.000000 SK-N-SH nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 446 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel SKNSH nuc pA+ - 1\ subGroups view=MinusSignal cellType=t2SKNSH localization=NUCLEUS rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqSknshNucleusPapMinusRep3\ type bigWig 1.000000 158821.000000\ wgEncodeSydhTfbsHelas3P300sc584sc584IggrabSig HeLa p300 IgR bigWig 1.000000 10065.000000 HeLa-S3 p300 SC584 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 447 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 p300 SC584 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa p300 IgR\ subGroups view=Signal factor=P300SC584 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3P300sc584sc584IggrabSig\ type bigWig 1.000000 10065.000000\ encTfChipPkENCFF345GZF HepG2 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in HepG2 from ENCODE 3 (ENCFF345GZF) 1 447 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of TAF1 in HepG2 from ENCODE 3 (ENCFF345GZF)\ parent encTfChipPk off\ shortLabel HepG2 TAF1\ subGroups cellType=HepG2 factor=TAF1\ track encTfChipPkENCFF345GZF\ wgEncodeUwHistoneHmecH3k4me3StdHotspotsRep2 HMEC H3K4M3 Ht 2 broadPeak HMEC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 447 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HMEC H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HMEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHmecH3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeAwgTfbsSydhHuvecMaxUniPk HUVEC MAX narrowPeak HUVEC TFBS Uniform Peaks of Max from ENCODE/Stanford/Analysis 1 447 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC TFBS Uniform Peaks of Max from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HUVEC MAX\ subGroups tier=a20 cellType=a20HUVEC factor=MAX lab=Stanford\ track wgEncodeAwgTfbsSydhHuvecMaxUniPk\ wgEncodeUwDnaseHvmfRawRep2 HVMF Sg 2 bigWig 1.000000 13877.000000 HVMF DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 447 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HVMF DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel HVMF Sg 2\ subGroups view=zRSig cellType=t3HVMF rep=rep2 treatment=None\ track wgEncodeUwDnaseHvmfRawRep2\ type bigWig 1.000000 13877.000000\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_forward 0 447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep1.CNhs14047.13423-144D3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13423-144D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_forward 1 447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep1.CNhs14047.13423-144D3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13423-144D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Sp1Pcr1xPkRep1 K562 SP1 PCR1 1 broadPeak K562 SP1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 447 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 SP1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 SP1 PCR1 1\ subGroups view=Peaks factor=SP1 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Sp1Pcr1xPkRep1\ type broadPeak\ wgEncodeBroadHistoneNhaH3k4me3StdPk NH-A H3K4m3 broadPeak NH-A H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 447 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NH-A H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NH-A H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k4me3StdPk\ type broadPeak\ wgEncodeRikenCageNhemm2CellPapTssHmm NHEM cell pA+ bed 6 NHEM M2 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 447 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHEM M2 whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel NHEM cell pA+\ subGroups view=TssHmm cellType=t3NHEMM2 localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageNhemm2CellPapTssHmm\ type bed 6\ wgEncodeCshlLongRnaSeqSknshNucleusPapMinusRep4 SKNSH nuc pA+ - 2 bigWig 1.000000 154353.000000 SK-N-SH nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 447 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel SKNSH nuc pA+ - 2\ subGroups view=MinusSignal cellType=t2SKNSH localization=NUCLEUS rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqSknshNucleusPapMinusRep4\ type bigWig 1.000000 154353.000000\ wgEncodeSydhTfbsHelas3Pol2StdPk HeLa Pol2 Std narrowPeak HeLa-S3 Pol2 Standard ChIP-seq Peaks from ENCODE/SYDH 3 448 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 Pol2 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa Pol2 Std\ subGroups view=Peaks factor=POL2 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Pol2StdPk\ type narrowPeak\ encTfChipPkENCFF490ZAU HepG2 TAF15 narrowPeak Transcription Factor ChIP-seq Peaks of TAF15 in HepG2 from ENCODE 3 (ENCFF490ZAU) 1 448 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of TAF15 in HepG2 from ENCODE 3 (ENCFF490ZAU)\ parent encTfChipPk off\ shortLabel HepG2 TAF15\ subGroups cellType=HepG2 factor=TAF15\ track encTfChipPkENCFF490ZAU\ wgEncodeUwHistoneHmecH3k4me3StdPkRep2 HMEC H3K4M3 Pk 2 narrowPeak HMEC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 448 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HMEC H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HMEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHmecH3k4me3StdPkRep2\ type narrowPeak\ wgEncodeAwgTfbsUtaHuvecCmycUniPk HUVEC MYC narrowPeak HUVEC TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis 1 448 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HUVEC MYC\ subGroups tier=a20 cellType=a20HUVEC factor=MYC lab=UT-A\ track wgEncodeAwgTfbsUtaHuvecCmycUniPk\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_reverse 0 448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep1.CNhs14047.13423-144D3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13423-144D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_reverse 1 448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep1.CNhs14047.13423-144D3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13423-144D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseJurkatHotspotsRep1 Jurkat Ht 1 broadPeak Jurkat DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 448 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Jurkat DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel Jurkat Ht 1\ subGroups view=Hot cellType=t3JURKAT rep=rep1 treatment=None\ track wgEncodeUwDnaseJurkatHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsK562Sp1Pcr1xRawRep1 K562 SP1 PCR1 1 bigWig 0.263100 188.117004 K562 SP1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 448 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 SP1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 SP1 PCR1 1\ subGroups view=RawSignal factor=SP1 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Sp1Pcr1xRawRep1\ type bigWig 0.263100 188.117004\ wgEncodeBroadHistoneNhaH3k4me3StdSig NH-A H3K4m3 bigWig 0.040000 18680.640625 NH-A H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 448 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NH-A H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NH-A H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k4me3StdSig\ type bigWig 0.040000 18680.640625\ wgEncodeRikenCageNhemm2CellPapPlusRawRep1 NHEM cell pA+ + 1 bigWig 1.000000 3650890.000000 NHEM M2 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 448 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM M2 whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel NHEM cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3NHEMM2 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageNhemm2CellPapPlusRawRep1\ type bigWig 1.000000 3650890.000000\ wgEncodeCshlLongRnaSeqSknshNucleusPapPlusRep3 SKNSH nuc pA+ + 1 bigWig 1.000000 229125.000000 SK-N-SH nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 448 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel SKNSH nuc pA+ + 1\ subGroups view=PlusSignal cellType=t2SKNSH localization=NUCLEUS rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqSknshNucleusPapPlusRep3\ type bigWig 1.000000 229125.000000\ wgEncodeSydhTfbsHelas3Pol2StdSig HeLa Pol2 Std bigWig 0.000000 12050.500000 HeLa-S3 Pol2 Standard ChIP-seq Signal from ENCODE/SYDH 2 449 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Pol2 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa Pol2 Std\ subGroups view=Signal factor=POL2 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Pol2StdSig\ type bigWig 0.000000 12050.500000\ encTfChipPkENCFF424KTS HepG2 TBL1XR1 narrowPeak Transcription Factor ChIP-seq Peaks of TBL1XR1 in HepG2 from ENCODE 3 (ENCFF424KTS) 1 449 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of TBL1XR1 in HepG2 from ENCODE 3 (ENCFF424KTS)\ parent encTfChipPk off\ shortLabel HepG2 TBL1XR1\ subGroups cellType=HepG2 factor=TBL1XR1\ track encTfChipPkENCFF424KTS\ wgEncodeUwHistoneHmecH3k4me3StdRawRep2 HMEC H3K4M3 Sg 2 bigWig 1.000000 3376.000000 HMEC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 449 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMEC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HMEC H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HMEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHmecH3k4me3StdRawRep2\ type bigWig 1.000000 3376.000000\ wgEncodeAwgTfbsBroadHuvecPol2bUniPk HUVEC POLR2A b narrowPeak HUVEC TFBS Uniform Peaks of Pol2(b) from ENCODE/Broad/Analysis 1 449 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC TFBS Uniform Peaks of Pol2(b) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HUVEC POLR2A b\ subGroups tier=a20 cellType=a20HUVEC factor=POLR2A lab=Broad\ track wgEncodeAwgTfbsBroadHuvecPol2bUniPk\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_forward 0 449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep2.CNhs13824.13427-144D7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13427-144D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_forward 1 449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep2.CNhs13824.13427-144D7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13427-144D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseJurkatPkRep1 Jurkat Pk 1 narrowPeak Jurkat DNaseI HS Peaks Rep 1 from ENCODE/UW 1 449 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Jurkat DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Jurkat Pk 1\ subGroups view=Peaks cellType=t3JURKAT rep=rep1 treatment=None\ track wgEncodeUwDnaseJurkatPkRep1\ type narrowPeak\ wgEncodeHaibTfbsK562Sp1Pcr1xPkRep2 K562 SP1 PCR1 2 broadPeak K562 SP1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 449 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 SP1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 SP1 PCR1 2\ subGroups view=Peaks factor=SP1 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Sp1Pcr1xPkRep2\ type broadPeak\ wgEncodeBroadHistoneNhaH3k09acPk NH-A H3K9ac broadPeak NH-A H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 449 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NH-A H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NH-A H3K9ac\ subGroups view=Peaks factor=H3K09AC cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k09acPk\ type broadPeak\ wgEncodeRikenCageNhemm2CellPapPlusRawRep2 NHEM cell pA+ + 2 bigWig 1.000000 537322.000000 NHEM M2 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 449 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM M2 whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel NHEM cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3NHEMM2 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageNhemm2CellPapPlusRawRep2\ type bigWig 1.000000 537322.000000\ wgEncodeCshlLongRnaSeqSknshNucleusPapPlusRep4 SKNSH nuc pA+ + 2 bigWig 1.000000 207210.000000 SK-N-SH nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 449 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel SKNSH nuc pA+ + 2\ subGroups view=PlusSignal cellType=t2SKNSH localization=NUCLEUS rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqSknshNucleusPapPlusRep4\ type bigWig 1.000000 207210.000000\ wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaAlnRep1 AG50 cel pA- A 1 bam AG04450 whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 450 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG04450 whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel AG50 cel pA- A 1\ subGroups view=Alignments cellType=t3AG04450 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaAlnRep1\ type bam\ wgEncodeSydhTfbsHelas3Pol2s2IggrabPk HeLa PolS IgR narrowPeak HeLa-S3 Pol2 S2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 450 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 Pol2 S2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa PolS IgR\ subGroups view=Peaks factor=POL2S2 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Pol2s2IggrabPk\ type narrowPeak\ encTfChipPkENCFF584CNF HepG2 TBP narrowPeak Transcription Factor ChIP-seq Peaks of TBP in HepG2 from ENCODE 3 (ENCFF584CNF) 1 450 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of TBP in HepG2 from ENCODE 3 (ENCFF584CNF)\ parent encTfChipPk off\ shortLabel HepG2 TBP\ subGroups cellType=HepG2 factor=TBP\ track encTfChipPkENCFF584CNF\ wgEncodeUwHistoneHmecH3k27me3StdHotspotsRep1 HMEC H3K27M3 Ht 1 broadPeak HMEC H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 450 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HMEC H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t3HMEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHmecH3k27me3StdHotspotsRep1\ type broadPeak\ wgEncodeAwgTfbsHaibHuvecPol24h8V0416101UniPk HUVEC POLR2A h narrowPeak HUVEC TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis 1 450 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel HUVEC POLR2A h\ subGroups tier=a20 cellType=a20HUVEC factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHuvecPol24h8V0416101UniPk\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_reverse 0 450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep2.CNhs13824.13427-144D7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13427-144D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_reverse 1 450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep2.CNhs13824.13427-144D7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13427-144D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseJurkatRawRep1 Jurkat Sg 1 bigWig 1.000000 78947.000000 Jurkat DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 450 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Jurkat DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Jurkat Sg 1\ subGroups view=zRSig cellType=t3JURKAT rep=rep1 treatment=None\ track wgEncodeUwDnaseJurkatRawRep1\ type bigWig 1.000000 78947.000000\ wgEncodeHaibTfbsK562Sp1Pcr1xRawRep2 K562 SP1 PCR1 2 bigWig 0.217611 186.546997 K562 SP1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 450 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 SP1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 SP1 PCR1 2\ subGroups view=RawSignal factor=SP1 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Sp1Pcr1xRawRep2\ type bigWig 0.217611 186.546997\ wgEncodeBroadHistoneNhaH3k09acSig NH-A H3K9ac bigWig 0.040000 17078.240234 NH-A H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 450 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NH-A H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NH-A H3K9ac\ subGroups view=Signal factor=H3K09AC cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k09acSig\ type bigWig 0.040000 17078.240234\ wgEncodeRikenCageNhemm2CellPapMinusRawRep1 NHEM cell pA+ - 1 bigWig 1.000000 663577.000000 NHEM M2 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 450 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM M2 whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel NHEM cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3NHEMM2 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageNhemm2CellPapMinusRawRep1\ type bigWig 1.000000 663577.000000\ wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaAlnRep2 AG50 cel pA- A 2 bam AG04450 whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 451 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG04450 whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel AG50 cel pA- A 2\ subGroups view=Alignments cellType=t3AG04450 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaAlnRep2\ type bam\ wgEncodeSydhTfbsHelas3Pol2s2IggrabSig HeLa PolS IgR bigWig 1.000000 4636.000000 HeLa-S3 Pol2 S2 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 451 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Pol2 S2 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa PolS IgR\ subGroups view=Signal factor=POL2S2 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Pol2s2IggrabSig\ type bigWig 1.000000 4636.000000\ encTfChipPkENCFF807BXT HepG2 TBX3 1 narrowPeak Transcription Factor ChIP-seq Peaks of TBX3 in HepG2 from ENCODE 3 (ENCFF807BXT) 1 451 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of TBX3 in HepG2 from ENCODE 3 (ENCFF807BXT)\ parent encTfChipPk off\ shortLabel HepG2 TBX3 1\ subGroups cellType=HepG2 factor=TBX3\ track encTfChipPkENCFF807BXT\ wgEncodeUwHistoneHmecH3k27me3StdPkRep1 HMEC H3K27M3 Pk 1 narrowPeak HMEC H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 451 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HMEC H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t3HMEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHmecH3k27me3StdPkRep1\ type narrowPeak\ wgEncodeAwgTfbsHaibHuvecPol2Pcr1xUniPk HUVEC POLR2A h2 narrowPeak HUVEC TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis 1 451 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HUVEC POLR2A h2\ subGroups tier=a20 cellType=a20HUVEC factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHuvecPol2Pcr1xUniPk\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_forward 0 451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep3.CNhs14051.13431-144E2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13431-144E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_forward 1 451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep3.CNhs14051.13431-144E2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13431-144E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseJurkatHotspotsRep2 Jurkat Ht 2 broadPeak Jurkat DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 451 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Jurkat DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel Jurkat Ht 2\ subGroups view=Hot cellType=t3JURKAT rep=rep2 treatment=None\ track wgEncodeUwDnaseJurkatHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsK562Sp2sc643V0416102PkRep1 K562 SP2 V102 1 broadPeak K562 SP2 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 451 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 SP2 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 SP2 V102 1\ subGroups view=Peaks factor=SP2SC643 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Sp2sc643V0416102PkRep1\ type broadPeak\ wgEncodeBroadHistoneNhaH3k09me3Pk NH-A H3K9m3 broadPeak NH-A H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 451 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NH-A H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NH-A H3K9m3\ subGroups view=Peaks factor=H3K09ME3 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k09me3Pk\ type broadPeak\ wgEncodeRikenCageNhemm2CellPapMinusRawRep2 NHEM cell pA+ - 2 bigWig 1.000000 393098.000000 NHEM M2 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 451 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM M2 whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel NHEM cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3NHEMM2 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageNhemm2CellPapMinusRawRep2\ type bigWig 1.000000 393098.000000\ wgEncodeCshlLongRnaSeqAg04450CellPamContigs AG50 cel pA- C bed 6 + AG04450 whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 452 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG04450 whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel AG50 cel pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3AG04450 localization=CELL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqAg04450CellPamContigs\ type bed 6 +\ wgEncodeSydhTfbsHelas3Prdm19115IggrabPk HeLa PRDM IgR narrowPeak HeLa-S3 PRDM1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 452 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 PRDM1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa PRDM IgR\ subGroups view=Peaks factor=PRDM19115 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Prdm19115IggrabPk\ type narrowPeak\ encTfChipPkENCFF574YMJ HepG2 TBX3 2 narrowPeak Transcription Factor ChIP-seq Peaks of TBX3 in HepG2 from ENCODE 3 (ENCFF574YMJ) 1 452 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of TBX3 in HepG2 from ENCODE 3 (ENCFF574YMJ)\ parent encTfChipPk off\ shortLabel HepG2 TBX3 2\ subGroups cellType=HepG2 factor=TBX3\ track encTfChipPkENCFF574YMJ\ wgEncodeUwHistoneHmecH3k27me3StdRawRep1 HMEC H3K27M3 Sg 1 bigWig 1.000000 8444.000000 HMEC H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 452 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMEC H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HMEC H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t3HMEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHmecH3k27me3StdRawRep1\ type bigWig 1.000000 8444.000000\ wgEncodeAwgTfbsSydhHuvecPol2UniPk HUVEC POLR2A s narrowPeak HUVEC TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis 1 452 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HUVEC POLR2A s\ subGroups tier=a20 cellType=a20HUVEC factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhHuvecPol2UniPk\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_reverse 0 452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep3.CNhs14051.13431-144E2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13431-144E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_reverse 1 452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep3.CNhs14051.13431-144E2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13431-144E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseJurkatPkRep2 Jurkat Pk 2 narrowPeak Jurkat DNaseI HS Peaks Rep 2 from ENCODE/UW 1 452 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Jurkat DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Jurkat Pk 2\ subGroups view=Peaks cellType=t3JURKAT rep=rep2 treatment=None\ track wgEncodeUwDnaseJurkatPkRep2\ type narrowPeak\ wgEncodeHaibTfbsK562Sp2sc643V0416102RawRep1 K562 SP2 V102 1 bigWig 0.532244 267.984985 K562 SP2 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 452 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 SP2 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 SP2 V102 1\ subGroups view=RawSignal factor=SP2SC643 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Sp2sc643V0416102RawRep1\ type bigWig 0.532244 267.984985\ wgEncodeBroadHistoneNhaH3k09me3Sig NH-A H3K9m3 bigWig 0.040000 51428.898438 NH-A H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 452 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NH-A H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NH-A H3K9m3\ subGroups view=Signal factor=H3K09ME3 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k09me3Sig\ type bigWig 0.040000 51428.898438\ wgEncodeRikenCageNhemm2CellPapAlnRep1 NHEM cell pA+ A 1 bam NHEM M2 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 452 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHEM M2 whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel NHEM cell pA+ A 1\ subGroups view=Alignments cellType=t3NHEMM2 localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageNhemm2CellPapAlnRep1\ type bam\ wgEncodeCshlLongRnaSeqAg04450CellPamJunctions AG50 cel pA- J bed 6 + AG04450 whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 453 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG04450 whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel AG50 cel pA- J\ subGroups view=Junctions cellType=t3AG04450 localization=CELL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqAg04450CellPamJunctions\ type bed 6 +\ wgEncodeSydhTfbsHelas3Prdm19115IggrabSig HeLa PRDM IgR bigWig 1.000000 11961.000000 HeLa-S3 PRDM1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 453 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 PRDM1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa PRDM IgR\ subGroups view=Signal factor=PRDM19115 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Prdm19115IggrabSig\ type bigWig 1.000000 11961.000000\ encTfChipPkENCFF949EAE HepG2 TCF12 1 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in HepG2 from ENCODE 3 (ENCFF949EAE) 1 453 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in HepG2 from ENCODE 3 (ENCFF949EAE)\ parent encTfChipPk off\ shortLabel HepG2 TCF12 1\ subGroups cellType=HepG2 factor=TCF12\ track encTfChipPkENCFF949EAE\ wgEncodeUwHistoneHmecInputStdRawRep1 HMEC In Sg 1 bigWig 1.000000 9968.000000 HMEC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 453 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMEC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HMEC In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HMEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHmecInputStdRawRep1\ type bigWig 1.000000 9968.000000\ wgEncodeAwgTfbsUtaHuvecPol2UniPk HUVEC POLR2A t narrowPeak HUVEC TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis 1 453 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HUVEC POLR2A t\ subGroups tier=a20 cellType=a20HUVEC factor=POLR2A lab=UT-A\ track wgEncodeAwgTfbsUtaHuvecPol2UniPk\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_forward 0 453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep1.CNhs13916.13424-144D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13424-144D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_forward 1 453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep1.CNhs13916.13424-144D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13424-144D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseJurkatRawRep2 Jurkat Sg 2 bigWig 1.000000 27637.000000 Jurkat DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 453 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Jurkat DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Jurkat Sg 2\ subGroups view=zRSig cellType=t3JURKAT rep=rep2 treatment=None\ track wgEncodeUwDnaseJurkatRawRep2\ type bigWig 1.000000 27637.000000\ wgEncodeHaibTfbsK562Sp2sc643V0416102PkRep2 K562 SP2 V102 2 broadPeak K562 SP2 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 453 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 SP2 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 SP2 V102 2\ subGroups view=Peaks factor=SP2SC643 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Sp2sc643V0416102PkRep2\ type broadPeak\ wgEncodeBroadHistoneNhaH3k27acStdPk NH-A H3K27ac broadPeak NH-A H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 453 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NH-A H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NH-A H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k27acStdPk\ type broadPeak\ wgEncodeRikenCageNhemm2CellPapAlnRep2 NHEM cell pA+ A 2 bam NHEM M2 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 453 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHEM M2 whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel NHEM cell pA+ A 2\ subGroups view=Alignments cellType=t3NHEMM2 localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageNhemm2CellPapAlnRep2\ type bam\ wgEncodeAwgTfbsHaibA549Atf3V0422111Etoh02UniPk A549+Et.02 ATF3 narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of ATF3 ENCODE/HudsonAlpha/Analysis 1 454 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of ATF3 ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Et.02 ATF3\ subGroups tier=a25 cellType=a25A549 factor=ATF3 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Atf3V0422111Etoh02UniPk\ wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaMinusRawSigRep1 AG50 cel pA- - 1 bigWig 1.000000 1177911.000000 AG04450 whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 454 0 0 0 127 127 127 0 0 0 expression 0 longLabel AG04450 whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel AG50 cel pA- - 1\ subGroups view=MinusSignal cellType=t3AG04450 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 1177911.000000\ wgEncodeSydhTfbsHelas3Rad21IggrabPk HeLa Rad2 IgR narrowPeak HeLa-S3 Rad21 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 454 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 Rad21 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa Rad2 IgR\ subGroups view=Peaks factor=RAD21 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Rad21IggrabPk\ type narrowPeak\ encTfChipPkENCFF940BIM HepG2 TCF12 2 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in HepG2 from ENCODE 3 (ENCFF940BIM) 1 454 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in HepG2 from ENCODE 3 (ENCFF940BIM)\ parent encTfChipPk off\ shortLabel HepG2 TCF12 2\ subGroups cellType=HepG2 factor=TCF12\ track encTfChipPkENCFF940BIM\ wgEncodeUwHistoneHmfH3k4me3StdHotspotsRep1 HMF H3K4M3 Ht 1 broadPeak HMF H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 454 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMF H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HMF H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HMF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHmfH3k4me3StdHotspotsRep1\ type broadPeak\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_reverse 0 454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep1.CNhs13916.13424-144D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13424-144D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_tpm_rev IpsToNeuronControlDnC11-CRL2429Day18R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_reverse 1 454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep1.CNhs13916.13424-144D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13424-144D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Sp2sc643V0416102RawRep2 K562 SP2 V102 2 bigWig 0.180834 216.141998 K562 SP2 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 454 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 SP2 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 SP2 V102 2\ subGroups view=RawSignal factor=SP2SC643 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Sp2sc643V0416102RawRep2\ type bigWig 0.180834 216.141998\ wgEncodeUwDnaseLncapHotspotsRep1 LNCaP Ht 1 broadPeak LNCaP DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 454 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel LNCaP DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel LNCaP Ht 1\ subGroups view=Hot cellType=t3LNCAP rep=rep1 treatment=None\ track wgEncodeUwDnaseLncapHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneNhaH3k27acStdSig NH-A H3K27ac bigWig 0.040000 6466.680176 NH-A H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 454 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NH-A H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NH-A H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k27acStdSig\ type bigWig 0.040000 6466.680176\ wgEncodeRikenCageProstateCellPamPlusSignal Pros cell pA- + 1 bigWig 0.070000 10635.549805 Prostate whole cell polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 454 0 0 0 127 127 127 0 0 0 expression 0 longLabel Prostate whole cell polyA- CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel Pros cell pA- + 1\ subGroups view=PlusRawSignal cellType=t3PROSTATE localization=wcell rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageProstateCellPamPlusSignal\ type bigWig 0.070000 10635.549805\ wgEncodeAwgTfbsHaibA549Bcl3V0422111Etoh02UniPk A549+Et.02 BCL3 narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of BCL3 from ENCODE/HudsonAlpha/Analysis 1 455 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of BCL3 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Et.02 BCL3\ subGroups tier=a25 cellType=a25A549 factor=BCL3 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Bcl3V0422111Etoh02UniPk\ wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaMinusRawSigRep2 AG50 cel pA- - 2 bigWig 1.000000 1806068.000000 AG04450 whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 455 0 0 0 127 127 127 0 0 0 expression 0 longLabel AG04450 whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel AG50 cel pA- - 2\ subGroups view=MinusSignal cellType=t3AG04450 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 1806068.000000\ wgEncodeSydhTfbsHelas3Rad21IggrabSig HeLa Rad2 IgR bigWig 0.000000 4480.000000 HeLa-S3 Rad21 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 455 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Rad21 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa Rad2 IgR\ subGroups view=Signal factor=RAD21 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Rad21IggrabSig\ type bigWig 0.000000 4480.000000\ encTfChipPkENCFF147MAN HepG2 TCF7 narrowPeak Transcription Factor ChIP-seq Peaks of TCF7 in HepG2 from ENCODE 3 (ENCFF147MAN) 1 455 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of TCF7 in HepG2 from ENCODE 3 (ENCFF147MAN)\ parent encTfChipPk off\ shortLabel HepG2 TCF7\ subGroups cellType=HepG2 factor=TCF7\ track encTfChipPkENCFF147MAN\ wgEncodeUwHistoneHmfH3k4me3StdPkRep1 HMF H3K4M3 Pk 1 narrowPeak HMF H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 455 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMF H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HMF H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HMF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHmfH3k4me3StdPkRep1\ type narrowPeak\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_forward 0 455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep2.CNhs13825.13428-144D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13428-144D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_forward 1 455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep2.CNhs13825.13428-144D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13428-144D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562SrfV0416101PkRep1 K562 SRF V101 1 broadPeak K562 SRF v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 455 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 SRF v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 SRF V101 1\ subGroups view=Peaks factor=SRF cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562SrfV0416101PkRep1\ type broadPeak\ wgEncodeUwDnaseLncapPkRep1 LNCaP Pk 1 narrowPeak LNCaP DNaseI HS Peaks Rep 1 from ENCODE/UW 1 455 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel LNCaP DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel LNCaP Pk 1\ subGroups view=Peaks cellType=t3LNCAP rep=rep1 treatment=None\ track wgEncodeUwDnaseLncapPkRep1\ type narrowPeak\ wgEncodeBroadHistoneNhaH3k27me3StdPk NH-A H3K27m3 broadPeak NH-A H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 455 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NH-A H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NH-A H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k27me3StdPk\ type broadPeak\ wgEncodeRikenCageProstateCellPamMinusSignal Pros cell pA- - 1 bigWig 0.070000 1982.420044 Prostate whole cell polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 455 0 0 0 127 127 127 0 0 0 expression 0 longLabel Prostate whole cell polyA- CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel Pros cell pA- - 1\ subGroups view=MinusRawSignal cellType=t3PROSTATE localization=wcell rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageProstateCellPamMinusSignal\ type bigWig 0.070000 1982.420044\ wgEncodeAwgTfbsSydhA549Bhlhe40IggrabUniPk A549 BHLHE40 narrowPeak A549 TFBS Uniform Peaks of BHLHE40 from ENCODE/Stanford/Analysis 1 456 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 TFBS Uniform Peaks of BHLHE40 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549 BHLHE40\ subGroups tier=a25 cellType=a25A549 factor=BHLHE40 lab=Stanford\ track wgEncodeAwgTfbsSydhA549Bhlhe40IggrabUniPk\ wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaPlusRawSigRep1 AG50 cel pA- + 1 bigWig 1.000000 7494687.000000 AG04450 whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 456 0 0 0 127 127 127 0 0 0 expression 0 longLabel AG04450 whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel AG50 cel pA- + 1\ subGroups view=PlusSignal cellType=t3AG04450 localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 7494687.000000\ wgEncodeSydhTfbsHelas3Rfx5200401194IggrabPk HeLa RFX5 IgR narrowPeak HeLa-S3 RFX5 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 456 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 RFX5 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa RFX5 IgR\ subGroups view=Peaks factor=RFX5200401194 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Rfx5200401194IggrabPk\ type narrowPeak\ encTfChipPkENCFF712NYW HepG2 TFAP4 narrowPeak Transcription Factor ChIP-seq Peaks of TFAP4 in HepG2 from ENCODE 3 (ENCFF712NYW) 1 456 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of TFAP4 in HepG2 from ENCODE 3 (ENCFF712NYW)\ parent encTfChipPk off\ shortLabel HepG2 TFAP4\ subGroups cellType=HepG2 factor=TFAP4\ track encTfChipPkENCFF712NYW\ wgEncodeUwHistoneHmfH3k4me3StdRawRep1 HMF H3K4M3 Sg 1 bigWig 1.000000 4301.000000 HMF H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 456 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMF H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HMF H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HMF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHmfH3k4me3StdRawRep1\ type bigWig 1.000000 4301.000000\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_reverse 0 456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep2.CNhs13825.13428-144D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13428-144D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_tpm_rev IpsToNeuronControlDnC11-CRL2429Day18R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_reverse 1 456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep2.CNhs13825.13428-144D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13428-144D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562SrfV0416101RawRep1 K562 SRF V101 1 bigWig 0.276991 1436.819946 K562 SRF v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 456 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 SRF v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 SRF V101 1\ subGroups view=RawSignal factor=SRF cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562SrfV0416101RawRep1\ type bigWig 0.276991 1436.819946\ wgEncodeUwDnaseLncapRawRep1 LNCaP Sg 1 bigWig 1.000000 124461.000000 LNCaP DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 456 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel LNCaP DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel LNCaP Sg 1\ subGroups view=zRSig cellType=t3LNCAP rep=rep1 treatment=None\ track wgEncodeUwDnaseLncapRawRep1\ type bigWig 1.000000 124461.000000\ wgEncodeBroadHistoneNhaH3k27me3StdSig NH-A H3K27m3 bigWig 0.040000 15338.599609 NH-A H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 456 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NH-A H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NH-A H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k27me3StdSig\ type bigWig 0.040000 15338.599609\ wgEncodeRikenCageProstateCellPamAln Pros cell pA- A 1 bam Prostate whole cell polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN 0 456 0 0 0 127 127 127 0 0 0 expression 1 longLabel Prostate whole cell polyA- CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel Pros cell pA- A 1\ subGroups view=Alignments cellType=t3PROSTATE localization=wcell rnaExtract=pAM rep=rep0 rank=rank1\ track wgEncodeRikenCageProstateCellPamAln\ type bam\ wgEncodeAwgTfbsSydhA549CebpbIggrabUniPk A549 CEBPB narrowPeak A549 TFBS Uniform Peaks of CEBPB from ENCODE/Stanford/Analysis 1 457 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 TFBS Uniform Peaks of CEBPB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549 CEBPB\ subGroups tier=a25 cellType=a25A549 factor=CEBPB lab=Stanford\ track wgEncodeAwgTfbsSydhA549CebpbIggrabUniPk\ wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaPlusRawSigRep2 AG50 cel pA- + 2 bigWig 1.000000 6246875.000000 AG04450 whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 457 0 0 0 127 127 127 0 0 0 expression 0 longLabel AG04450 whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel AG50 cel pA- + 2\ subGroups view=PlusSignal cellType=t3AG04450 localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 6246875.000000\ wgEncodeSydhTfbsHelas3Rfx5200401194IggrabSig HeLa RFX5 IgR bigWig 1.000000 30385.000000 HeLa-S3 RFX5 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 457 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 RFX5 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa RFX5 IgR\ subGroups view=Signal factor=RFX5200401194 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Rfx5200401194IggrabSig\ type bigWig 1.000000 30385.000000\ encTfChipPkENCFF623ALA HepG2 TRIM22 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM22 in HepG2 from ENCODE 3 (ENCFF623ALA) 1 457 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of TRIM22 in HepG2 from ENCODE 3 (ENCFF623ALA)\ parent encTfChipPk off\ shortLabel HepG2 TRIM22\ subGroups cellType=HepG2 factor=TRIM22\ track encTfChipPkENCFF623ALA\ wgEncodeUwHistoneHmfH3k4me3StdHotspotsRep2 HMF H3K4M3 Ht 2 broadPeak HMF H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 457 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMF H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HMF H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HMF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHmfH3k4me3StdHotspotsRep2\ type broadPeak\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_forward 0 457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep3.CNhs13917.13432-144E3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13432-144E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_forward 1 457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep3.CNhs13917.13432-144E3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13432-144E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562SrfV0416101PkRep2 K562 SRF V101 2 broadPeak K562 SRF v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 457 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 SRF v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 SRF V101 2\ subGroups view=Peaks factor=SRF cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562SrfV0416101PkRep2\ type broadPeak\ wgEncodeUwDnaseLncapHotspotsRep2 LNCaP Ht 2 broadPeak LNCaP DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 457 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel LNCaP DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel LNCaP Ht 2\ subGroups view=Hot cellType=t3LNCAP rep=rep2 treatment=None\ track wgEncodeUwDnaseLncapHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneNhaH3k36me3StdPk NH-A H3K36m3 broadPeak NH-A H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 457 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NH-A H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NH-A H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k36me3StdPk\ type broadPeak\ wgEncodeRikenCageSkmcCellPapTssHmm SkMC cell pA+ bed 6 SkMC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 457 0 0 0 127 127 127 0 0 0 expression 1 longLabel SkMC whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel SkMC cell pA+\ subGroups view=TssHmm cellType=t3SKMC localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageSkmcCellPapTssHmm\ type bed 6\ wgEncodeAwgTfbsHaibA549Creb1sc240V0416102Dex100nmUniPk A549+Dx100n CREB1 narrowPeak A549 (DEX_100nM) TFBS Uniform Peaks of CREB1_(SC-240) ENCODE/HudsonAlph/Analysis 1 458 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (DEX_100nM) TFBS Uniform Peaks of CREB1_(SC-240) ENCODE/HudsonAlph/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Dx100n CREB1\ subGroups tier=a25 cellType=a25A549 factor=CREB1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Creb1sc240V0416102Dex100nmUniPk\ wgEncodeCshlLongRnaSeqAg04450CellPapAlnRep1 AG50 cel pA+ A 1 bam AG04450 whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 458 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG04450 whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel AG50 cel pA+ A 1\ subGroups view=Alignments cellType=t3AG04450 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqAg04450CellPapAlnRep1\ type bam\ wgEncodeSydhTfbsHelas3Rpc155StdPk HeLa RPC1 Std narrowPeak HeLa-S3 RPC155 Standard ChIP-seq Peaks from ENCODE/SYDH 3 458 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 RPC155 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa RPC1 Std\ subGroups view=Peaks factor=RPC155 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Rpc155StdPk\ type narrowPeak\ encTfChipPkENCFF055MVR HepG2 U2AF1 narrowPeak Transcription Factor ChIP-seq Peaks of U2AF1 in HepG2 from ENCODE 3 (ENCFF055MVR) 1 458 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of U2AF1 in HepG2 from ENCODE 3 (ENCFF055MVR)\ parent encTfChipPk off\ shortLabel HepG2 U2AF1\ subGroups cellType=HepG2 factor=U2AF1\ track encTfChipPkENCFF055MVR\ wgEncodeUwHistoneHmfH3k4me3StdPkRep2 HMF H3K4M3 Pk 2 narrowPeak HMF H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 458 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMF H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HMF H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HMF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHmfH3k4me3StdPkRep2\ type narrowPeak\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_reverse 0 458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep3.CNhs13917.13432-144E3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13432-144E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_tpm_rev IpsToNeuronControlDnC11-CRL2429Day18R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_reverse 1 458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep3.CNhs13917.13432-144E3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13432-144E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562SrfV0416101RawRep2 K562 SRF V101 2 bigWig 0.213052 282.880005 K562 SRF v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 458 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 SRF v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 SRF V101 2\ subGroups view=RawSignal factor=SRF cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562SrfV0416101RawRep2\ type bigWig 0.213052 282.880005\ wgEncodeUwDnaseLncapPkRep2 LNCaP Pk 2 narrowPeak LNCaP DNaseI HS Peaks Rep 2 from ENCODE/UW 1 458 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel LNCaP DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel LNCaP Pk 2\ subGroups view=Peaks cellType=t3LNCAP rep=rep2 treatment=None\ track wgEncodeUwDnaseLncapPkRep2\ type narrowPeak\ wgEncodeBroadHistoneNhaH3k36me3StdSig NH-A H3K36m3 bigWig 0.040000 14461.040039 NH-A H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 458 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NH-A H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NH-A H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k36me3StdSig\ type bigWig 0.040000 14461.040039\ wgEncodeRikenCageSkmcCellPapPlusRawRep1 SkMC cell pA+ + 1 bigWig 1.000000 2539200.000000 SkMC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 458 0 0 0 127 127 127 0 0 0 expression 0 longLabel SkMC whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel SkMC cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3SKMC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageSkmcCellPapPlusRawRep1\ type bigWig 1.000000 2539200.000000\ wgEncodeAwgTfbsHaibA549Ctcfsc5916Pcr1xDex100nmUniPk A549+Dx100n CTCF narrowPeak A549 (DEX_100nM) TFBS Uniform Peaks of CTCF_(SC-5916) ENCODE/HudsonAlph/Analysis 1 459 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (DEX_100nM) TFBS Uniform Peaks of CTCF_(SC-5916) ENCODE/HudsonAlph/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel A549+Dx100n CTCF\ subGroups tier=a25 cellType=a25A549 factor=CTCF lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Ctcfsc5916Pcr1xDex100nmUniPk\ wgEncodeCshlLongRnaSeqAg04450CellPapAlnRep2 AG50 cel pA+ A 2 bam AG04450 whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 459 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG04450 whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel AG50 cel pA+ A 2\ subGroups view=Alignments cellType=t3AG04450 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqAg04450CellPapAlnRep2\ type bam\ wgEncodeSydhTfbsHelas3Rpc155StdSig HeLa RPC1 Std bigWig 0.000000 17037.800781 HeLa-S3 RPC155 Standard ChIP-seq Signal from ENCODE/SYDH 2 459 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 RPC155 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa RPC1 Std\ subGroups view=Signal factor=RPC155 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Rpc155StdSig\ type bigWig 0.000000 17037.800781\ encTfChipPkENCFF038QAU HepG2 U2AF2 narrowPeak Transcription Factor ChIP-seq Peaks of U2AF2 in HepG2 from ENCODE 3 (ENCFF038QAU) 1 459 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of U2AF2 in HepG2 from ENCODE 3 (ENCFF038QAU)\ parent encTfChipPk off\ shortLabel HepG2 U2AF2\ subGroups cellType=HepG2 factor=U2AF2\ track encTfChipPkENCFF038QAU\ wgEncodeUwHistoneHmfH3k4me3StdRawRep2 HMF H3K4M3 Sg 2 bigWig 1.000000 3836.000000 HMF H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 459 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMF H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HMF H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HMF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHmfH3k4me3StdRawRep2\ type bigWig 1.000000 3836.000000\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_forward 0 459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep1.CNhs13826.13433-144E4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13433-144E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_forward 1 459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep1.CNhs13826.13433-144E4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13433-144E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Stat5asc74442V0422111PkRep1 K562 STAT5A V11 1 broadPeak K562 STAT5A v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 459 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 STAT5A v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 STAT5A V11 1\ subGroups view=Peaks factor=STAT5ASC74442 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Stat5asc74442V0422111PkRep1\ type broadPeak\ wgEncodeUwDnaseLncapRawRep2 LNCaP Sg 2 bigWig 1.000000 71657.000000 LNCaP DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 459 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel LNCaP DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel LNCaP Sg 2\ subGroups view=zRSig cellType=t3LNCAP rep=rep2 treatment=None\ track wgEncodeUwDnaseLncapRawRep2\ type bigWig 1.000000 71657.000000\ wgEncodeBroadHistoneNhaH3k79me2Pk NH-A H3K79m2 broadPeak NH-A H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 459 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NH-A H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NH-A H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k79me2Pk\ type broadPeak\ wgEncodeRikenCageSkmcCellPapPlusRawRep2 SkMC cell pA+ + 2 bigWig 1.000000 1959460.000000 SkMC whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 459 0 0 0 127 127 127 0 0 0 expression 0 longLabel SkMC whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel SkMC cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3SKMC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageSkmcCellPapPlusRawRep2\ type bigWig 1.000000 1959460.000000\ wgEncodeAwgTfbsHaibA549Ctcfsc5916Pcr1xEtoh02UniPk A549+Et.02 CTCF narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of CTCF_(SC-5916) ENCODE/HudsonAlpha/Analysis 1 460 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of CTCF_(SC-5916) ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Et.02 CTCF\ subGroups tier=a25 cellType=a25A549 factor=CTCF lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Ctcfsc5916Pcr1xEtoh02UniPk\ wgEncodeCshlLongRnaSeqAg04450CellPapContigs AG50 cel pA+ C bed 6 + AG04450 whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 460 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG04450 whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel AG50 cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3AG04450 localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqAg04450CellPapContigs\ type bed 6 +\ wgEncodeSydhTfbsHelas3Smc3ab9263IggrabPk HeLa SMC3 IgR narrowPeak HeLa-S3 SMC3 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 460 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 SMC3 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa SMC3 IgR\ subGroups view=Peaks factor=SMC3ab9263 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Smc3ab9263IggrabPk\ type narrowPeak\ encTfChipPkENCFF684BLN HepG2 USF1 narrowPeak Transcription Factor ChIP-seq Peaks of USF1 in HepG2 from ENCODE 3 (ENCFF684BLN) 1 460 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of USF1 in HepG2 from ENCODE 3 (ENCFF684BLN)\ parent encTfChipPk off\ shortLabel HepG2 USF1\ subGroups cellType=HepG2 factor=USF1\ track encTfChipPkENCFF684BLN\ wgEncodeUwHistoneHmfInputStdRawRep1 HMF In Sg 1 bigWig 1.000000 4624.000000 HMF Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 460 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HMF Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HMF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HMF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHmfInputStdRawRep1\ type bigWig 1.000000 4624.000000\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_reverse 0 460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep1.CNhs13826.13433-144E4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13433-144E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_reverse 1 460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep1.CNhs13826.13433-144E4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13433-144E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Stat5asc74442V0422111RawRep1 K562 STAT5A V11 1 bigWig 0.097254 139.121994 K562 STAT5A v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 460 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 STAT5A v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 STAT5A V11 1\ subGroups view=RawSignal factor=STAT5ASC74442 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Stat5asc74442V0422111RawRep1\ type bigWig 0.097254 139.121994\ wgEncodeUwDnaseM059jHotspotsRep1 M059J Ht 1 broadPeak M059J DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 460 0 0 0 127 127 127 0 0 0 regulation 1 longLabel M059J DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel M059J Ht 1\ subGroups view=Hot cellType=t3M059J treatment=None rep=rep1\ track wgEncodeUwDnaseM059jHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneNhaH3k79me2Sig NH-A H3K79m2 bigWig 0.040000 8231.639648 NH-A H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 460 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NH-A H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NH-A H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH3k79me2Sig\ type bigWig 0.040000 8231.639648\ wgEncodeRikenCageSkmcCellPapMinusRawRep1 SkMC cell pA+ - 1 bigWig 1.000000 462300.000000 SkMC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 460 0 0 0 127 127 127 0 0 0 expression 0 longLabel SkMC whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel SkMC cell pA+ - 1\ subGroups view=MinusRawSignal cellType=t3SKMC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageSkmcCellPapMinusRawRep1\ type bigWig 1.000000 462300.000000\ wgEncodeAwgTfbsUtaA549CtcfUniPk A549 CTCF t narrowPeak A549 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 461 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549 CTCF t\ subGroups tier=a25 cellType=a25A549 factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaA549CtcfUniPk\ wgEncodeCshlLongRnaSeqAg04450CellPapJunctions AG50 cel pA+ J bed 6 + AG04450 whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 461 0 0 0 127 127 127 0 0 0 expression 1 longLabel AG04450 whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel AG50 cel pA+ J\ subGroups view=Junctions cellType=t3AG04450 localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqAg04450CellPapJunctions\ type bed 6 +\ wgEncodeSydhTfbsHelas3Smc3ab9263IggrabSig HeLa SMC3 IgR bigWig 1.000000 15538.000000 HeLa-S3 SMC3 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 461 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 SMC3 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa SMC3 IgR\ subGroups view=Signal factor=SMC3ab9263 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Smc3ab9263IggrabSig\ type bigWig 1.000000 15538.000000\ encTfChipPkENCFF845GIK HepG2 XRCC5 narrowPeak Transcription Factor ChIP-seq Peaks of XRCC5 in HepG2 from ENCODE 3 (ENCFF845GIK) 1 461 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of XRCC5 in HepG2 from ENCODE 3 (ENCFF845GIK)\ parent encTfChipPk off\ shortLabel HepG2 XRCC5\ subGroups cellType=HepG2 factor=XRCC5\ track encTfChipPkENCFF845GIK\ wgEncodeUwHistoneHpafH3k4me3StdHotspotsRep1 HPAF H3K4M3 Ht 1 broadPeak HPAF H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 461 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAF H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HPAF H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HPAF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHpafH3k4me3StdHotspotsRep1\ type broadPeak\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_forward 0 461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep2.CNhs13839.13437-144E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13437-144E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_forward 1 461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep2.CNhs13839.13437-144E8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13437-144E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Stat5asc74442V0422111PkRep2 K562 STAT5A V11 2 broadPeak K562 STAT5A v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 461 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 STAT5A v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 STAT5A V11 2\ subGroups view=Peaks factor=STAT5ASC74442 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Stat5asc74442V0422111PkRep2\ type broadPeak\ wgEncodeUwDnaseM059jPkRep1 M059J Pk 1 narrowPeak M059J DNaseI HS Peaks Rep 1 from ENCODE/UW 1 461 0 0 0 127 127 127 0 0 0 regulation 1 longLabel M059J DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel M059J Pk 1\ subGroups view=Peaks cellType=t3M059J treatment=None rep=rep1\ track wgEncodeUwDnaseM059jPkRep1\ type narrowPeak\ wgEncodeBroadHistoneNhaH4k20me1Pk NH-A H4K20m1 broadPeak NH-A H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 461 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NH-A H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NH-A H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH4k20me1Pk\ type broadPeak\ wgEncodeRikenCageSkmcCellPapMinusRawRep2 SkMC cell pA+ - 2 bigWig 1.000000 569177.000000 SkMC whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 461 0 0 0 127 127 127 0 0 0 expression 0 longLabel SkMC whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel SkMC cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3SKMC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageSkmcCellPapMinusRawRep2\ type bigWig 1.000000 569177.000000\ wgEncodeAwgTfbsUwA549CtcfUniPk A549 CTCF w narrowPeak A549 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 462 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549 CTCF w\ subGroups tier=a25 cellType=a25A549 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwA549CtcfUniPk\ wgEncodeCshlLongRnaSeqAg04450CellPapMinusRawSigRep1 AG50 cel pA+ - 1 bigWig 1.000000 357918.000000 AG04450 whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 462 0 0 0 127 127 127 0 0 0 expression 0 longLabel AG04450 whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel AG50 cel pA+ - 1\ subGroups view=MinusSignal cellType=t3AG04450 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqAg04450CellPapMinusRawSigRep1\ type bigWig 1.000000 357918.000000\ wgEncodeSydhTfbsHelas3Spt20StdPk HeLa SPT Std narrowPeak HeLa-S3 SPT20 Standard ChIP-seq Peaks from ENCODE/SYDH 3 462 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 SPT20 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa SPT Std\ subGroups view=Peaks factor=SPT20 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Spt20StdPk\ type narrowPeak\ encTfChipPkENCFF420KEV HepG2 YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in HepG2 from ENCODE 3 (ENCFF420KEV) 1 462 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in HepG2 from ENCODE 3 (ENCFF420KEV)\ parent encTfChipPk off\ shortLabel HepG2 YY1\ subGroups cellType=HepG2 factor=YY1\ track encTfChipPkENCFF420KEV\ wgEncodeUwHistoneHpafH3k4me3StdPkRep1 HPAF H3K4M3 Pk 1 narrowPeak HPAF H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 462 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAF H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HPAF H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HPAF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHpafH3k4me3StdPkRep1\ type narrowPeak\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_reverse 0 462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep2.CNhs13839.13437-144E8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13437-144E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_reverse 1 462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep2.CNhs13839.13437-144E8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13437-144E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Stat5asc74442V0422111RawRep2 K562 STAT5A V11 2 bigWig 0.089175 231.899002 K562 STAT5A v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 462 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 STAT5A v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 STAT5A V11 2\ subGroups view=RawSignal factor=STAT5ASC74442 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Stat5asc74442V0422111RawRep2\ type bigWig 0.089175 231.899002\ wgEncodeUwDnaseM059jRawRep1 M059J Sg 1 bigWig 1.000000 31327.000000 M059J DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 462 0 0 0 127 127 127 0 0 0 regulation 0 longLabel M059J DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel M059J Sg 1\ subGroups view=zRSig cellType=t3M059J treatment=None rep=rep1\ track wgEncodeUwDnaseM059jRawRep1\ type bigWig 1.000000 31327.000000\ wgEncodeBroadHistoneNhaH4k20me1Sig NH-A H4K20m1 bigWig 0.040000 40198.000000 NH-A H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 462 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NH-A H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NH-A H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaH4k20me1Sig\ type bigWig 0.040000 40198.000000\ wgEncodeRikenCageSkmcCellPapAlnRep1 SkMC cell pA+ A 1 bam SkMC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 462 0 0 0 127 127 127 0 0 0 expression 1 longLabel SkMC whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel SkMC cell pA+ A 1\ subGroups view=Alignments cellType=t3SKMC localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageSkmcCellPapAlnRep1\ type bam\ wgEncodeAwgTfbsHaibA549Elf1V0422111Etoh02UniPk A549+Et.02 ELF1 narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of ELF1_(SC-631) ENCODE/HudsonAlpha/Analysis 1 463 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of ELF1_(SC-631) ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Et.02 ELF1\ subGroups tier=a25 cellType=a25A549 factor=ELF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Elf1V0422111Etoh02UniPk\ wgEncodeCshlLongRnaSeqAg04450CellPapMinusRawSigRep2 AG50 cel pA+ - 2 bigWig 1.000000 700329.000000 AG04450 whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 463 0 0 0 127 127 127 0 0 0 expression 0 longLabel AG04450 whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel AG50 cel pA+ - 2\ subGroups view=MinusSignal cellType=t3AG04450 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqAg04450CellPapMinusRawSigRep2\ type bigWig 1.000000 700329.000000\ wgEncodeSydhTfbsHelas3Spt20StdSig HeLa SPT Std bigWig 1.000000 181887.000000 HeLa-S3 SPT20 Standard ChIP-seq Signal from ENCODE/SYDH 2 463 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 SPT20 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa SPT Std\ subGroups view=Signal factor=SPT20 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Spt20StdSig\ type bigWig 1.000000 181887.000000\ encTfChipPkENCFF557KGA HepG2 ZBTB33 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in HepG2 from ENCODE 3 (ENCFF557KGA) 1 463 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in HepG2 from ENCODE 3 (ENCFF557KGA)\ parent encTfChipPk off\ shortLabel HepG2 ZBTB33\ subGroups cellType=HepG2 factor=ZBTB33\ track encTfChipPkENCFF557KGA\ wgEncodeUwHistoneHpafH3k4me3StdRawRep1 HPAF H3K4M3 Sg 1 bigWig 1.000000 2892.000000 HPAF H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 463 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPAF H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HPAF H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HPAF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHpafH3k4me3StdRawRep1\ type bigWig 1.000000 2892.000000\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_forward 0 463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep3.CNhs14052.13441-144F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13441-144F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_forward 1 463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep3.CNhs14052.13441-144F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13441-144F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Taf1V0416101PkRep1 K562 TAF1 V101 1 broadPeak K562 TAF1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 463 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TAF1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 TAF1 V101 1\ subGroups view=Peaks factor=TAF1 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Taf1V0416101PkRep1\ type broadPeak\ wgEncodeUwDnaseM059jHotspotsRep2 M059J Ht 2 broadPeak M059J DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 463 0 0 0 127 127 127 0 0 0 regulation 1 longLabel M059J DNaseI HS HotSpots Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel M059J Ht 2\ subGroups view=Hot cellType=t3M059J rep=rep2 treatment=None\ track wgEncodeUwDnaseM059jHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneNhaControlStdSig NH-A Input bigWig 0.040000 54769.359375 NH-A Input Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 463 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NH-A Input Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NH-A Input\ subGroups view=Signal factor=zCTRL cellType=t3NHA treatment=zNONE\ track wgEncodeBroadHistoneNhaControlStdSig\ type bigWig 0.040000 54769.359375\ wgEncodeRikenCageSkmcCellPapAlnRep2 SkMC cell pA+ A 2 bam SkMC whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 463 0 0 0 127 127 127 0 0 0 expression 1 longLabel SkMC whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel SkMC cell pA+ A 2\ subGroups view=Alignments cellType=t3SKMC localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageSkmcCellPapAlnRep2\ type bam\ wgEncodeAwgTfbsHaibA549P300V0422111Etoh02UniPk A549+Et.02 EP300 narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of p300 from ENCODE/HudsonAlpha/Analysis 1 464 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of p300 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Et.02 EP300\ subGroups tier=a25 cellType=a25A549 factor=EP300 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549P300V0422111Etoh02UniPk\ wgEncodeCshlLongRnaSeqAg04450CellPapPlusRawSigRep1 AG50 cel pA+ + 1 bigWig 1.000000 650052.000000 AG04450 whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 464 0 0 0 127 127 127 0 0 0 expression 0 longLabel AG04450 whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel AG50 cel pA+ + 1\ subGroups view=PlusSignal cellType=t3AG04450 localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqAg04450CellPapPlusRawSigRep1\ type bigWig 1.000000 650052.000000\ wgEncodeSydhTfbsHelas3Stat1Ifng30StdPk HeLa IFg3 STA1 Sd narrowPeak HeLa-S3 STAT1 Standard IFNg 30min ChIP-seq Peaks from ENCODE/SYDH 3 464 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 STAT1 Standard IFNg 30min ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa IFg3 STA1 Sd\ subGroups view=Peaks factor=STAT1 cellType=t2HELAS3 control=STD treatment=IFNg30\ track wgEncodeSydhTfbsHelas3Stat1Ifng30StdPk\ type narrowPeak\ encTfChipPkENCFF598VEK HepG2 ZBTB40 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB40 in HepG2 from ENCODE 3 (ENCFF598VEK) 1 464 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB40 in HepG2 from ENCODE 3 (ENCFF598VEK)\ parent encTfChipPk off\ shortLabel HepG2 ZBTB40\ subGroups cellType=HepG2 factor=ZBTB40\ track encTfChipPkENCFF598VEK\ wgEncodeUwHistoneHpafH3k4me3StdHotspotsRep2 HPAF H3K4M3 Ht 2 broadPeak HPAF H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 464 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAF H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HPAF H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HPAF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHpafH3k4me3StdHotspotsRep2\ type broadPeak\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_reverse 0 464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep3.CNhs14052.13441-144F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13441-144F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_reverse 1 464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep3.CNhs14052.13441-144F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13441-144F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Taf1V0416101RawRep1 K562 TAF1 V101 1 bigWig 0.462392 62.307301 K562 TAF1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 464 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 TAF1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 TAF1 V101 1\ subGroups view=RawSignal factor=TAF1 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Taf1V0416101RawRep1\ type bigWig 0.462392 62.307301\ wgEncodeUwDnaseM059jPkRep2 M059J Pk 2 narrowPeak M059J DNaseI HS Peaks Rep 2 from ENCODE/UW 1 464 0 0 0 127 127 127 0 0 0 regulation 1 longLabel M059J DNaseI HS Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel M059J Pk 2\ subGroups view=Peaks cellType=t3M059J rep=rep2 treatment=None\ track wgEncodeUwDnaseM059jPkRep2\ type narrowPeak\ wgEncodeBroadHistoneNhdfadCtcfStdPk NHDF-Ad CTCF broadPeak NHDF-Ad CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 464 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHDF-Ad CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHDF-Ad CTCF\ subGroups view=Peaks factor=CTCF cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadCtcfStdPk\ type broadPeak\ wgEncodeRikenCageSknshraCellPapTssHmm SKRA cell pA+ bed 6 SK-N-SH RA whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN 3 464 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH RA whole cell polyA+ CAGE TSS HMM from ENCODE/RIKEN\ parent wgEncodeRikenCageViewTssHmm off\ shortLabel SKRA cell pA+\ subGroups view=TssHmm cellType=t3SKNSHRA localization=wcell rnaExtract=pAP rep=Pooled rank=rankP\ track wgEncodeRikenCageSknshraCellPapTssHmm\ type bed 6\ wgEncodeAwgTfbsHaibA549Ets1V0422111Etoh02UniPk A549+Et.02 ETS1 narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of ETS1 from ENCODE/HudsonAlpha/Analysis 1 465 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of ETS1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Et.02 ETS1\ subGroups tier=a25 cellType=a25A549 factor=ETS1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Ets1V0422111Etoh02UniPk\ wgEncodeCshlLongRnaSeqAg04450CellPapPlusRawSigRep2 AG50 cel pA+ + 2 bigWig 1.000000 526018.000000 AG04450 whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 465 0 0 0 127 127 127 0 0 0 expression 0 longLabel AG04450 whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel AG50 cel pA+ + 2\ subGroups view=PlusSignal cellType=t3AG04450 localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqAg04450CellPapPlusRawSigRep2\ type bigWig 1.000000 526018.000000\ wgEncodeSydhTfbsHelas3Stat1Ifng30StdSig HeLa IFg3 STA1 Sd bigWig 0.000000 12023.900391 HeLa-S3 STAT1 Standard IFNg 30min ChIP-seq Signal from ENCODE/SYDH 2 465 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 STAT1 Standard IFNg 30min ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa IFg3 STA1 Sd\ subGroups view=Signal factor=STAT1 cellType=t2HELAS3 control=STD treatment=IFNg30\ track wgEncodeSydhTfbsHelas3Stat1Ifng30StdSig\ type bigWig 0.000000 12023.900391\ encTfChipPkENCFF264LQE HepG2 ZBTB7A narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB7A in HepG2 from ENCODE 3 (ENCFF264LQE) 1 465 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB7A in HepG2 from ENCODE 3 (ENCFF264LQE)\ parent encTfChipPk off\ shortLabel HepG2 ZBTB7A\ subGroups cellType=HepG2 factor=ZBTB7A\ track encTfChipPkENCFF264LQE\ wgEncodeUwHistoneHpafH3k4me3StdPkRep2 HPAF H3K4M3 Pk 2 narrowPeak HPAF H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 465 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAF H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HPAF H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HPAF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHpafH3k4me3StdPkRep2\ type narrowPeak\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_forward 0 465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep1.CNhs13827.13434-144E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13434-144E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_forward 1 465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep1.CNhs13827.13434-144E5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13434-144E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Taf1V0416101PkRep2 K562 TAF1 V101 2 broadPeak K562 TAF1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 465 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TAF1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 TAF1 V101 2\ subGroups view=Peaks factor=TAF1 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Taf1V0416101PkRep2\ type broadPeak\ wgEncodeUwDnaseM059jRawRep2 M059J Sg 2 bigWig 1.000000 28155.000000 M059J DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 465 0 0 0 127 127 127 0 0 0 regulation 0 longLabel M059J DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel M059J Sg 2\ subGroups view=zRSig cellType=t3M059J rep=rep2 treatment=None\ track wgEncodeUwDnaseM059jRawRep2\ type bigWig 1.000000 28155.000000\ wgEncodeBroadHistoneNhdfadCtcfStdSig NHDF-Ad CTCF bigWig 0.040000 18716.720703 NHDF-Ad CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 465 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHDF-Ad CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHDF-Ad CTCF\ subGroups view=Signal factor=CTCF cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadCtcfStdSig\ type bigWig 0.040000 18716.720703\ wgEncodeRikenCageSknshraCellPapPlusRawRep1 SKSH cell pA+ + 1 bigWig 1.000000 185567.000000 SK-N-SH_RA whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN 2 465 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH_RA whole cell polyA+ CAGE Plus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel SKSH cell pA+ + 1\ subGroups view=PlusRawSignal cellType=t3SKNSHRA localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageSknshraCellPapPlusRawRep1\ type bigWig 1.000000 185567.000000\ wgEncodeAwgTfbsHaibA549Fosl2V0422111Etoh02UniPk A549+Et.02 FOSL2 narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of FOSL2 from ENCODE/HudsonAlpha/Analysis 1 466 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of FOSL2 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Et.02 FOSL2\ subGroups tier=a25 cellType=a25A549 factor=FOSL2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Fosl2V0422111Etoh02UniPk\ wgEncodeCshlLongRnaSeqBjCellLongnonpolyaAlnRep1 BJ cel pA- A 1 bam BJ whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 466 0 0 0 127 127 127 0 0 0 expression 1 longLabel BJ whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel BJ cel pA- A 1\ subGroups view=Alignments cellType=t3BJ localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqBjCellLongnonpolyaAlnRep1\ type bam\ wgEncodeSydhTfbsHelas3Stat3IggrabPk HeLa STA3 IgR narrowPeak HeLa-S3 STAT3 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 466 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 STAT3 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa STA3 IgR\ subGroups view=Peaks factor=STAT3 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Stat3IggrabPk\ type narrowPeak\ encTfChipPkENCFF974OIC HepG2 ZHX2 narrowPeak Transcription Factor ChIP-seq Peaks of ZHX2 in HepG2 from ENCODE 3 (ENCFF974OIC) 1 466 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ZHX2 in HepG2 from ENCODE 3 (ENCFF974OIC)\ parent encTfChipPk off\ shortLabel HepG2 ZHX2\ subGroups cellType=HepG2 factor=ZHX2\ track encTfChipPkENCFF974OIC\ wgEncodeUwHistoneHpafH3k4me3StdRawRep2 HPAF H3K4M3 Sg 2 bigWig 1.000000 3521.000000 HPAF H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 466 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPAF H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HPAF H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HPAF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHpafH3k4me3StdRawRep2\ type bigWig 1.000000 3521.000000\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_reverse 0 466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep1.CNhs13827.13434-144E5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13434-144E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_reverse 1 466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep1.CNhs13827.13434-144E5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13434-144E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Taf1V0416101RawRep2 K562 TAF1 V101 2 bigWig 0.381158 196.487000 K562 TAF1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 466 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 TAF1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 TAF1 V101 2\ subGroups view=RawSignal factor=TAF1 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Taf1V0416101RawRep2\ type bigWig 0.381158 196.487000\ wgEncodeUwDnaseNb4HotspotsRep1 NB4 Ht 1 broadPeak NB4 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 466 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel NB4 Ht 1\ subGroups view=Hot cellType=t3NB4 rep=rep1 treatment=None\ track wgEncodeUwDnaseNb4HotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneNhdfadEzh239875Pk NHDF-Ad EZH2 broadPeak NHDF-Ad EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 466 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHDF-Ad EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHDF-Ad EZH2\ subGroups view=Peaks factor=EZH239875 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadEzh239875Pk\ type broadPeak\ wgEncodeRikenCageSknshraCellPapPlusSignalRep2 SKSH cell pA+ + 2 bigWig 1.000000 232069.000000 SK-N-SH_RA whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN 2 466 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH_RA whole cell polyA+ CAGE Plus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewPlusSignal off\ shortLabel SKSH cell pA+ + 2\ subGroups view=PlusRawSignal cellType=t3SKNSHRA localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageSknshraCellPapPlusSignalRep2\ type bigWig 1.000000 232069.000000\ wgEncodeAwgTfbsHaibA549Foxa1V0416102Dex100nmUniPk A549+Dx100n FOXA1 narrowPeak A549 (DEX_100nM) TFBS Uniform Peaks of FOXA1_(SC-101058) ENCODE/HudsonA/Analysis 1 467 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (DEX_100nM) TFBS Uniform Peaks of FOXA1_(SC-101058) ENCODE/HudsonA/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Dx100n FOXA1\ subGroups tier=a25 cellType=a25A549 factor=FOXA1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Foxa1V0416102Dex100nmUniPk\ wgEncodeCshlLongRnaSeqBjCellLongnonpolyaAlnRep2 BJ cel pA- A 2 bam BJ whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 467 0 0 0 127 127 127 0 0 0 expression 1 longLabel BJ whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel BJ cel pA- A 2\ subGroups view=Alignments cellType=t3BJ localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqBjCellLongnonpolyaAlnRep2\ type bam\ wgEncodeSydhTfbsHelas3Stat3IggrabSig HeLa STA3 IgR bigWig 0.000000 10657.400391 HeLa-S3 STAT3 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 467 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 STAT3 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa STA3 IgR\ subGroups view=Signal factor=STAT3 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Stat3IggrabSig\ type bigWig 0.000000 10657.400391\ encTfChipPkENCFF614VFL HepG2 ZKSCAN1 narrowPeak Transcription Factor ChIP-seq Peaks of ZKSCAN1 in HepG2 from ENCODE 3 (ENCFF614VFL) 1 467 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ZKSCAN1 in HepG2 from ENCODE 3 (ENCFF614VFL)\ parent encTfChipPk off\ shortLabel HepG2 ZKSCAN1\ subGroups cellType=HepG2 factor=ZKSCAN1\ track encTfChipPkENCFF614VFL\ wgEncodeUwHistoneHpafInputStdRawRep1 HPAF In Sg 1 bigWig 1.000000 15992.000000 HPAF Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 467 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPAF Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HPAF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HPAF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHpafInputStdRawRep1\ type bigWig 1.000000 15992.000000\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_forward 0 467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep2.CNhs13840.13438-144E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13438-144E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_forward 1 467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep2.CNhs13840.13438-144E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13438-144E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Taf7sc101167V0416101PkRep1 K562 TAF7 V101 1 broadPeak K562 TAF7 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 467 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TAF7 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 TAF7 V101 1\ subGroups view=Peaks factor=TAF7SC101167 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Taf7sc101167V0416101PkRep1\ type broadPeak\ wgEncodeUwDnaseNb4PkRep1 NB4 Pk 1 narrowPeak NB4 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 467 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel NB4 Pk 1\ subGroups view=Peaks cellType=t3NB4 rep=rep1 treatment=None\ track wgEncodeUwDnaseNb4PkRep1\ type narrowPeak\ wgEncodeBroadHistoneNhdfadEzh239875Sig NHDF-Ad EZH2 bigWig 0.040000 20522.400391 NHDF-Ad EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 467 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHDF-Ad EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHDF-Ad EZH2\ subGroups view=Signal factor=EZH239875 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadEzh239875Sig\ type bigWig 0.040000 20522.400391\ wgEncodeRikenCageSknshraCellPapMinusRawRep1 SKSH cell pAP - 1 bigWig 1.000000 134321.000000 SK-N-SH_RA whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN 2 467 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH_RA whole cell polyA+ CAGE Minus start sites Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel SKSH cell pAP - 1\ subGroups view=MinusRawSignal cellType=t3SKNSHRA localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageSknshraCellPapMinusRawRep1\ type bigWig 1.000000 134321.000000\ wgEncodeAwgTfbsHaibA549GabpV0422111Etoh02UniPk A549+Et.02 GABPA narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of GABP from ENCODE/HudsonAlpha/Analysis 1 468 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of GABP from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Et.02 GABPA\ subGroups tier=a25 cellType=a25A549 factor=GABPA lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549GabpV0422111Etoh02UniPk\ wgEncodeCshlLongRnaSeqBjCellPamContigs BJ cel pA- C bed 6 + BJ whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 468 0 0 0 127 127 127 0 0 0 expression 1 longLabel BJ whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel BJ cel pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3BJ localization=CELL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqBjCellPamContigs\ type bed 6 +\ wgEncodeSydhTfbsHelas3TbpIggrabPk HeLa TBP IgR narrowPeak HeLa-S3 TBP IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 468 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TBP IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa TBP IgR\ subGroups view=Peaks factor=TBP cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3TbpIggrabPk\ type narrowPeak\ encTfChipPkENCFF177FZU HepG2 ZMYM3 narrowPeak Transcription Factor ChIP-seq Peaks of ZMYM3 in HepG2 from ENCODE 3 (ENCFF177FZU) 1 468 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ZMYM3 in HepG2 from ENCODE 3 (ENCFF177FZU)\ parent encTfChipPk off\ shortLabel HepG2 ZMYM3\ subGroups cellType=HepG2 factor=ZMYM3\ track encTfChipPkENCFF177FZU\ wgEncodeUwHistoneHpfH3k4me3StdHotspotsRep1 HPF H3K4M3 Ht 1 broadPeak HPF H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 468 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPF H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HPF H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HPF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHpfH3k4me3StdHotspotsRep1\ type broadPeak\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_reverse 0 468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep2.CNhs13840.13438-144E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13438-144E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_reverse 1 468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep2.CNhs13840.13438-144E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13438-144E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Taf7sc101167V0416101RawRep1 K562 TAF7 V101 1 bigWig 0.242982 254.766006 K562 TAF7 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 468 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 TAF7 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 TAF7 V101 1\ subGroups view=RawSignal factor=TAF7SC101167 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Taf7sc101167V0416101RawRep1\ type bigWig 0.242982 254.766006\ wgEncodeUwDnaseNb4RawRep1 NB4 Sg 1 bigWig 1.000000 24532.000000 NB4 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 468 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NB4 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel NB4 Sg 1\ subGroups view=zRSig cellType=t3NB4 rep=rep1 treatment=None\ track wgEncodeUwDnaseNb4RawRep1\ type bigWig 1.000000 24532.000000\ wgEncodeBroadHistoneNhdfadH2azPk NHDF-Ad H2A.Z broadPeak NHDF-Ad H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 468 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHDF-Ad H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHDF-Ad H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH2azPk\ type broadPeak\ wgEncodeRikenCageSknshraCellPapMinusSignalRep2 SKSH cell pA+ - 2 bigWig 1.000000 118040.000000 SK-N-SH_RA whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN 2 468 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH_RA whole cell polyA+ CAGE Minus start sites Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewMinusSignal off\ shortLabel SKSH cell pA+ - 2\ subGroups view=MinusRawSignal cellType=t3SKNSHRA localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageSknshraCellPapMinusSignalRep2\ type bigWig 1.000000 118040.000000\ wgEncodeAwgTfbsSydhA549MaxIggrabUniPk A549 MAX narrowPeak A549 TFBS Uniform Peaks of Max from ENCODE/Stanford/Analysis 1 469 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 TFBS Uniform Peaks of Max from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549 MAX\ subGroups tier=a25 cellType=a25A549 factor=MAX lab=Stanford\ track wgEncodeAwgTfbsSydhA549MaxIggrabUniPk\ wgEncodeCshlLongRnaSeqBjCellPamJunctions BJ cel pA- J bed 6 + BJ whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 469 0 0 0 127 127 127 0 0 0 expression 1 longLabel BJ whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel BJ cel pA- J\ subGroups view=Junctions cellType=t3BJ localization=CELL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqBjCellPamJunctions\ type bed 6 +\ wgEncodeSydhTfbsHelas3TbpIggrabSig HeLa TBP IgR bigWig 0.000000 15604.500000 HeLa-S3 TBP IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 469 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 TBP IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa TBP IgR\ subGroups view=Signal factor=TBP cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3TbpIggrabSig\ type bigWig 0.000000 15604.500000\ encTfChipPkENCFF556DEP HepG2 ZNF207 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF207 in HepG2 from ENCODE 3 (ENCFF556DEP) 1 469 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ZNF207 in HepG2 from ENCODE 3 (ENCFF556DEP)\ parent encTfChipPk off\ shortLabel HepG2 ZNF207\ subGroups cellType=HepG2 factor=ZNF207\ track encTfChipPkENCFF556DEP\ wgEncodeUwHistoneHpfH3k4me3StdPkRep1 HPF H3K4M3 Pk 1 narrowPeak HPF H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 469 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPF H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HPF H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HPF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHpfH3k4me3StdPkRep1\ type narrowPeak\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_forward 0 469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep3.CNhs14053.13442-144F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13442-144F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_forward 1 469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep3.CNhs14053.13442-144F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13442-144F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Taf7sc101167V0416101PkRep2 K562 TAF7 V101 2 broadPeak K562 TAF7 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 469 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TAF7 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 TAF7 V101 2\ subGroups view=Peaks factor=TAF7SC101167 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Taf7sc101167V0416101PkRep2\ type broadPeak\ wgEncodeUwDnaseNb4HotspotsRep2 NB4 Ht 2 broadPeak NB4 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 469 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel NB4 Ht 2\ subGroups view=Hot cellType=t3NB4 rep=rep2 treatment=None\ track wgEncodeUwDnaseNb4HotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneNhdfadH2azSig NHDF-Ad H2A.Z bigWig 0.040000 29992.800781 NHDF-Ad H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 469 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHDF-Ad H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHDF-Ad H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH2azSig\ type bigWig 0.040000 29992.800781\ wgEncodeRikenCageSknshraCellPapAlnRep1 SKSH cell pA+ A 1 bam SK-N-SH_RA whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN 0 469 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH_RA whole cell polyA+ CAGE Alignments Rep 1 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel SKSH cell pA+ A 1\ subGroups view=Alignments cellType=t3SKNSHRA localization=wcell rnaExtract=pAP rep=rep1 rank=rank1\ track wgEncodeRikenCageSknshraCellPapAlnRep1\ type bam\ wgEncodeAwgTfbsHaibA549GrPcr2xDex100nmUniPk A549+Dx100n NR3C1 narrowPeak A549 (DEX_100nM) TFBS Uniform Peaks of GR from ENCODE/HudsonAlpha/Analysis 1 470 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (DEX_100nM) TFBS Uniform Peaks of GR from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel A549+Dx100n NR3C1\ subGroups tier=a25 cellType=a25A549 factor=NR3C1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549GrPcr2xDex100nmUniPk\ wgEncodeCshlLongRnaSeqBjCellLongnonpolyaMinusRawSigRep1 BJ cel pA- - 1 bigWig 1.000000 1310427.000000 BJ whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 470 0 0 0 127 127 127 0 0 0 expression 0 longLabel BJ whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel BJ cel pA- - 1\ subGroups view=MinusSignal cellType=t3BJ localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqBjCellLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 1310427.000000\ wgEncodeSydhTfbsHelas3Tcf7l2UcdPk HeLa TCF7L2 UCD narrowPeak HeLa-S3 TCF7L2 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 470 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TCF7L2 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa TCF7L2 UCD\ subGroups view=Peaks factor=TCF7L2 cellType=t2HELAS3 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Tcf7l2UcdPk\ type narrowPeak\ encTfChipPkENCFF443EYO HepG2 ZNF24 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in HepG2 from ENCODE 3 (ENCFF443EYO) 1 470 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in HepG2 from ENCODE 3 (ENCFF443EYO)\ parent encTfChipPk off\ shortLabel HepG2 ZNF24 1\ subGroups cellType=HepG2 factor=ZNF24\ track encTfChipPkENCFF443EYO\ wgEncodeUwHistoneHpfH3k4me3StdRawRep1 HPF H3K4M3 Sg 1 bigWig 1.000000 5458.000000 HPF H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 470 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPF H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HPF H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HPF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHpfH3k4me3StdRawRep1\ type bigWig 1.000000 5458.000000\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_reverse 0 470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep3.CNhs14053.13442-144F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13442-144F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_reverse 1 470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep3.CNhs14053.13442-144F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13442-144F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Taf7sc101167V0416101RawRep2 K562 TAF7 V101 2 bigWig 0.211353 666.976990 K562 TAF7 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 470 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 TAF7 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 TAF7 V101 2\ subGroups view=RawSignal factor=TAF7SC101167 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Taf7sc101167V0416101RawRep2\ type bigWig 0.211353 666.976990\ wgEncodeUwDnaseNb4PkRep2 NB4 Pk 2 narrowPeak NB4 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 470 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel NB4 Pk 2\ subGroups view=Peaks cellType=t3NB4 rep=rep2 treatment=None\ track wgEncodeUwDnaseNb4PkRep2\ type narrowPeak\ wgEncodeBroadHistoneNhdfadH3k04me1Pk NHDF-Ad H3K4m1 broadPeak NHDF-Ad H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 470 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHDF-Ad H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHDF-Ad H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k04me1Pk\ type broadPeak\ wgEncodeRikenCageSknshraCellPapAlnRep2 SKSH cell pA+ A 2 bam SK-N-SH_RA whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN 0 470 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH_RA whole cell polyA+ CAGE Alignments Rep 2 from ENCODE/RIKEN\ parent wgEncodeRikenCageViewAlignments off\ shortLabel SKSH cell pA+ A 2\ subGroups view=Alignments cellType=t3SKNSHRA localization=wcell rnaExtract=pAP rep=rep2 rank=rank2\ track wgEncodeRikenCageSknshraCellPapAlnRep2\ type bam\ wgEncodeAwgTfbsHaibA549GrPcr1xDex500pmUniPk A549+Dx500p NR3C1 narrowPeak A549 (DEX_500pM) TFBS Uniform Peaks of GR from ENCODE/HudsonAlpha/Analysis 1 471 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (DEX_500pM) TFBS Uniform Peaks of GR from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Dx500p NR3C1\ subGroups tier=a25 cellType=a25A549 factor=NR3C1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549GrPcr1xDex500pmUniPk\ wgEncodeCshlLongRnaSeqBjCellLongnonpolyaMinusRawSigRep2 BJ cel pA- - 2 bigWig 1.000000 1471367.000000 BJ whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 471 0 0 0 127 127 127 0 0 0 expression 0 longLabel BJ whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel BJ cel pA- - 2\ subGroups view=MinusSignal cellType=t3BJ localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqBjCellLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 1471367.000000\ wgEncodeSydhTfbsHelas3Tcf7l2UcdSig HeLa TCF7L2 UCD bigWig 1.000000 12380.000000 HeLa-S3 TCF7L2 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 471 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 TCF7L2 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa TCF7L2 UCD\ subGroups view=Signal factor=TCF7L2 cellType=t2HELAS3 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Tcf7l2UcdSig\ type bigWig 1.000000 12380.000000\ encTfChipPkENCFF539NTA HepG2 ZNF24 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in HepG2 from ENCODE 3 (ENCFF539NTA) 1 471 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in HepG2 from ENCODE 3 (ENCFF539NTA)\ parent encTfChipPk off\ shortLabel HepG2 ZNF24 2\ subGroups cellType=HepG2 factor=ZNF24\ track encTfChipPkENCFF539NTA\ wgEncodeUwHistoneHpfH3k4me3StdHotspotsRep2 HPF H3K4M3 Ht 2 broadPeak HPF H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 471 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPF H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HPF H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HPF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHpfH3k4me3StdHotspotsRep2\ type broadPeak\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_forward 0 471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep1.CNhs13828.13435-144E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13435-144E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_forward 1 471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep1.CNhs13828.13435-144E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13435-144E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Tead4sc101184V0422111PkRep1 K562 TEAD4 V11 1 broadPeak K562 TEAD4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 471 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TEAD4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 TEAD4 V11 1\ subGroups view=Peaks factor=TEAD4SC101184 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Tead4sc101184V0422111PkRep1\ type broadPeak\ wgEncodeUwDnaseNb4RawRep2 NB4 Sg 2 bigWig 1.000000 25204.000000 NB4 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 471 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NB4 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel NB4 Sg 2\ subGroups view=zRSig cellType=t3NB4 rep=rep2 treatment=None\ track wgEncodeUwDnaseNb4RawRep2\ type bigWig 1.000000 25204.000000\ wgEncodeBroadHistoneNhdfadH3k04me1Sig NHDF-Ad H3K4m1 bigWig 0.040000 12241.599609 NHDF-Ad H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 471 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHDF-Ad H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHDF-Ad H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k04me1Sig\ type bigWig 0.040000 12241.599609\ wgEncodeAwgTfbsHaibA549GrPcr1xDex50nmUniPk A549+Dx50nM NR3C1 narrowPeak A549 (DEX_50nM) TFBS Uniform Peaks of GR from ENCODE/HudsonAlpha/Analysis 1 472 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (DEX_50nM) TFBS Uniform Peaks of GR from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Dx50nM NR3C1\ subGroups tier=a25 cellType=a25A549 factor=NR3C1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549GrPcr1xDex50nmUniPk\ wgEncodeCshlLongRnaSeqBjCellLongnonpolyaPlusRawSigRep1 BJ cel pA- + 1 bigWig 1.000000 3598691.000000 BJ whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 472 0 0 0 127 127 127 0 0 0 expression 0 longLabel BJ whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel BJ cel pA- + 1\ subGroups view=PlusSignal cellType=t3BJ localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqBjCellLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 3598691.000000\ wgEncodeSydhTfbsHelas3Tcf7l2c9b92565UcdPk HeLa TCF7L2 UCD narrowPeak HeLa-S3 TCF7L2 C9B9 2565 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 472 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TCF7L2 C9B9 2565 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa TCF7L2 UCD\ subGroups view=Peaks factor=TCF7L2C9B92565 cellType=t2HELAS3 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Tcf7l2c9b92565UcdPk\ type narrowPeak\ encTfChipPkENCFF266KSD HepG2 ZNF282 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF282 in HepG2 from ENCODE 3 (ENCFF266KSD) 1 472 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ZNF282 in HepG2 from ENCODE 3 (ENCFF266KSD)\ parent encTfChipPk off\ shortLabel HepG2 ZNF282\ subGroups cellType=HepG2 factor=ZNF282\ track encTfChipPkENCFF266KSD\ wgEncodeUwHistoneHpfH3k4me3StdPkRep2 HPF H3K4M3 Pk 2 narrowPeak HPF H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 472 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPF H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HPF H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HPF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHpfH3k4me3StdPkRep2\ type narrowPeak\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_reverse 0 472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep1.CNhs13828.13435-144E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13435-144E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_reverse 1 472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep1.CNhs13828.13435-144E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13435-144E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Tead4sc101184V0422111RawRep1 K562 TEAD4 V11 1 bigWig 0.131648 171.766998 K562 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 472 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 TEAD4 V11 1\ subGroups view=RawSignal factor=TEAD4SC101184 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Tead4sc101184V0422111RawRep1\ type bigWig 0.131648 171.766998\ wgEncodeUwDnaseNhaHotspotsRep1 NH-A Ht 1 broadPeak NH-A DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 472 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NH-A DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel NH-A Ht 1\ subGroups view=Hot cellType=t3NHA rep=rep1 treatment=None\ track wgEncodeUwDnaseNhaHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneNhdfadH3k4me2StdPk NHDF-Ad H3K4m2 broadPeak NHDF-Ad H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 472 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHDF-Ad H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHDF-Ad H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k4me2StdPk\ type broadPeak\ wgEncodeAwgTfbsHaibA549GrPcr1xDex5nmUniPk A549+Dx5nM NR3C1 narrowPeak A549 (DEX_5nM) TFBS Uniform Peaks of GR from ENCODE/HudsonAlpha/Analysis 1 473 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (DEX_5nM) TFBS Uniform Peaks of GR from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Dx5nM NR3C1\ subGroups tier=a25 cellType=a25A549 factor=NR3C1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549GrPcr1xDex5nmUniPk\ wgEncodeCshlLongRnaSeqBjCellLongnonpolyaPlusRawSigRep2 BJ cel pA- + 2 bigWig 1.000000 1897313.000000 BJ whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 473 0 0 0 127 127 127 0 0 0 expression 0 longLabel BJ whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel BJ cel pA- + 2\ subGroups view=PlusSignal cellType=t3BJ localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqBjCellLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 1897313.000000\ wgEncodeSydhTfbsHelas3Tcf7l2c9b92565UcdSig HeLa TCF7L2 UCD bigWig 1.000000 16621.000000 HeLa-S3 TCF7L2 C9B9 2565 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 473 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 TCF7L2 C9B9 2565 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa TCF7L2 UCD\ subGroups view=Signal factor=TCF7L2C9B92565 cellType=t2HELAS3 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Tcf7l2c9b92565UcdSig\ type bigWig 1.000000 16621.000000\ encTfChipPkENCFF324TBP HepG2 ZNF384 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF384 in HepG2 from ENCODE 3 (ENCFF324TBP) 1 473 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel Transcription Factor ChIP-seq Peaks of ZNF384 in HepG2 from ENCODE 3 (ENCFF324TBP)\ parent encTfChipPk off\ shortLabel HepG2 ZNF384\ subGroups cellType=HepG2 factor=ZNF384\ track encTfChipPkENCFF324TBP\ wgEncodeUwHistoneHpfH3k4me3StdRawRep2 HPF H3K4M3 Sg 2 bigWig 1.000000 4481.000000 HPF H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 473 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPF H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HPF H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HPF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHpfH3k4me3StdRawRep2\ type bigWig 1.000000 4481.000000\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_forward 0 473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep2.CNhs13841.13439-144F1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13439-144F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_forward 1 473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep2.CNhs13841.13439-144F1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13439-144F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Tead4sc101184V0422111PkRep2 K562 TEAD4 V11 2 broadPeak K562 TEAD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 473 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TEAD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 TEAD4 V11 2\ subGroups view=Peaks factor=TEAD4SC101184 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Tead4sc101184V0422111PkRep2\ type broadPeak\ wgEncodeUwDnaseNhaPkRep1 NH-A Pk 1 narrowPeak NH-A DNaseI HS Peaks Rep 1 from ENCODE/UW 1 473 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NH-A DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel NH-A Pk 1\ subGroups view=Peaks cellType=t3NHA rep=rep1 treatment=None\ track wgEncodeUwDnaseNhaPkRep1\ type narrowPeak\ wgEncodeBroadHistoneNhdfadH3k4me2StdSig NHDF-Ad H3K4m2 bigWig 0.040000 13155.320312 NHDF-Ad H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 473 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHDF-Ad H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHDF-Ad H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k4me2StdSig\ type bigWig 0.040000 13155.320312\ wgEncodeAwgTfbsHaibA549Pol2Pcr2xDex100nmUniPk A549+Dx100 POLR2A narrowPeak A549 (DEX_100nM) TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis 1 474 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (DEX_100nM) TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Dx100 POLR2A\ subGroups tier=a25 cellType=a25A549 factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Pol2Pcr2xDex100nmUniPk\ wgEncodeCshlLongRnaSeqBjCellPapAlnRep1 BJ cel pA+ A 1 bam BJ whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 474 0 0 0 127 127 127 0 0 0 expression 1 longLabel BJ whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel BJ cel pA+ A 1\ subGroups view=Alignments cellType=t3BJ localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqBjCellPapAlnRep1\ type bam\ wgEncodeSydhTfbsHelas3Tf3c110StdPk HeLa TF3C Std narrowPeak HeLa-S3 TFIIIC-110 Standard ChIP-seq Peaks from ENCODE/SYDH 3 474 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TFIIIC-110 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa TF3C Std\ subGroups view=Peaks factor=TF3C110 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Tf3c110StdPk\ type narrowPeak\ wgEncodeUwHistoneHpfInputStdRawRep1 HPF In Sg 1 bigWig 1.000000 13754.000000 HPF Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 474 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HPF Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HPF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HPF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHpfInputStdRawRep1\ type bigWig 1.000000 13754.000000\ encTfChipPkENCFF942FBW IMR-90 BHLHE40 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in IMR-90 from ENCODE 3 (ENCFF942FBW) 1 474 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in IMR-90 from ENCODE 3 (ENCFF942FBW)\ parent encTfChipPk off\ shortLabel IMR-90 BHLHE40\ subGroups cellType=IMR-90 factor=BHLHE40\ track encTfChipPkENCFF942FBW\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_reverse 0 474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep2.CNhs13841.13439-144F1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13439-144F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_reverse 1 474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep2.CNhs13841.13439-144F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13439-144F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Tead4sc101184V0422111RawRep2 K562 TEAD4 V11 2 bigWig 0.115014 174.505005 K562 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 474 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 TEAD4 V11 2\ subGroups view=RawSignal factor=TEAD4SC101184 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Tead4sc101184V0422111RawRep2\ type bigWig 0.115014 174.505005\ wgEncodeUwDnaseNhaRawRep1 NH-A Sg 1 bigWig 1.000000 28967.000000 NH-A DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 474 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NH-A DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel NH-A Sg 1\ subGroups view=zRSig cellType=t3NHA rep=rep1 treatment=None\ track wgEncodeUwDnaseNhaRawRep1\ type bigWig 1.000000 28967.000000\ wgEncodeBroadHistoneNhdfadH3k4me3StdPk NHDF-Ad H3K4m3 broadPeak NHDF-Ad H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 474 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHDF-Ad H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHDF-Ad H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k4me3StdPk\ type broadPeak\ wgEncodeAwgTfbsHaibA549Pol2Pcr2xEtoh02UniPk A549+Et.02 POLR2A narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis 1 475 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Et.02 POLR2A\ subGroups tier=a25 cellType=a25A549 factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Pol2Pcr2xEtoh02UniPk\ wgEncodeCshlLongRnaSeqBjCellPapAlnRep2 BJ cel pA+ A 2 bam BJ whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 475 0 0 0 127 127 127 0 0 0 expression 1 longLabel BJ whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel BJ cel pA+ A 2\ subGroups view=Alignments cellType=t3BJ localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqBjCellPapAlnRep2\ type bam\ wgEncodeSydhTfbsHelas3Tf3c110StdSig HeLa TF3C Std bigWig 0.000000 17044.599609 HeLa-S3 TFIIIC-110 Standard ChIP-seq Signal from ENCODE/SYDH 2 475 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 TFIIIC-110 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa TF3C Std\ subGroups view=Signal factor=TF3C110 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Tf3c110StdSig\ type bigWig 0.000000 17044.599609\ wgEncodeUwHistoneHreH3k4me3StdHotspotsRep1 HRE H3K4M3 Ht 1 broadPeak HRE H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 475 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HRE H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HRE rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHreH3k4me3StdHotspotsRep1\ type broadPeak\ encTfChipPkENCFF456GRS IMR-90 CEBPB narrowPeak Transcription Factor ChIP-seq Peaks of CEBPB in IMR-90 from ENCODE 3 (ENCFF456GRS) 1 475 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CEBPB in IMR-90 from ENCODE 3 (ENCFF456GRS)\ parent encTfChipPk off\ shortLabel IMR-90 CEBPB\ subGroups cellType=IMR-90 factor=CEBPB\ track encTfChipPkENCFF456GRS\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_forward 0 475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep3.CNhs14054.13443-144F5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13443-144F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_forward 1 475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep3.CNhs14054.13443-144F5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13443-144F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Thap1sc98174V0416101PkRep1 K562 THAP1 V101 1 broadPeak K562 THAP1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 475 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 THAP1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 THAP1 V101 1\ subGroups view=Peaks factor=THAP1SC98174 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Thap1sc98174V0416101PkRep1\ type broadPeak\ wgEncodeUwDnaseNhaHotspotsRep2 NH-A Ht 2 broadPeak NH-A DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 475 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NH-A DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel NH-A Ht 2\ subGroups view=Hot cellType=t3NHA rep=rep2 treatment=None\ track wgEncodeUwDnaseNhaHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneNhdfadH3k4me3StdSig NHDF-Ad H3K4m3 bigWig 0.040000 26645.640625 NHDF-Ad H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 475 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHDF-Ad H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHDF-Ad H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k4me3StdSig\ type bigWig 0.040000 26645.640625\ wgEncodeAwgTfbsSydhA549Pol2s2IggrabUniPk A549 POLR2A s narrowPeak A549 TFBS Uniform Peaks of Pol2(phosphoS2) from ENCODE/Stanford/Analysis 1 476 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 TFBS Uniform Peaks of Pol2(phosphoS2) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549 POLR2A s\ subGroups tier=a25 cellType=a25A549 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhA549Pol2s2IggrabUniPk\ wgEncodeCshlLongRnaSeqBjCellPapContigs BJ cel pA+ C bed 6 + BJ whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 476 0 0 0 127 127 127 0 0 0 expression 1 longLabel BJ whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel BJ cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3BJ localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqBjCellPapContigs\ type bed 6 +\ wgEncodeSydhTfbsHelas3Tr4StdPk HeLa TR4 Std narrowPeak HeLa-S3 TR4 Standard ChIP-seq Peaks from ENCODE/SYDH 3 476 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TR4 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa TR4 Std\ subGroups view=Peaks factor=TR4 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Tr4StdPk\ type narrowPeak\ wgEncodeUwHistoneHreH3k4me3StdPkRep1 HRE H3K4M3 Pk 1 narrowPeak HRE H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 476 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HRE H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HRE rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHreH3k4me3StdPkRep1\ type narrowPeak\ encTfChipPkENCFF441IFB IMR-90 CHD1 narrowPeak Transcription Factor ChIP-seq Peaks of CHD1 in IMR-90 from ENCODE 3 (ENCFF441IFB) 1 476 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CHD1 in IMR-90 from ENCODE 3 (ENCFF441IFB)\ parent encTfChipPk off\ shortLabel IMR-90 CHD1\ subGroups cellType=IMR-90 factor=CHD1\ track encTfChipPkENCFF441IFB\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_reverse 0 476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep3.CNhs14054.13443-144F5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13443-144F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_reverse 1 476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep3.CNhs14054.13443-144F5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13443-144F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Thap1sc98174V0416101RawRep1 K562 THAP1 V101 1 bigWig 0.306795 56.373501 K562 THAP1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 476 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 THAP1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 THAP1 V101 1\ subGroups view=RawSignal factor=THAP1SC98174 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Thap1sc98174V0416101RawRep1\ type bigWig 0.306795 56.373501\ wgEncodeUwDnaseNhaPkRep2 NH-A Pk 2 narrowPeak NH-A DNaseI HS Peaks Rep 2 from ENCODE/UW 1 476 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NH-A DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel NH-A Pk 2\ subGroups view=Peaks cellType=t3NHA rep=rep2 treatment=None\ track wgEncodeUwDnaseNhaPkRep2\ type narrowPeak\ wgEncodeBroadHistoneNhdfadH3k9acStdPk NHDF-Ad H3K9ac broadPeak NHDF-Ad H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 476 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHDF-Ad H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHDF-Ad H3K9ac\ subGroups view=Peaks factor=H3K09AC cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k9acStdPk\ type broadPeak\ wgEncodeAwgTfbsUtaA549Pol2UniPk A549 POLR2A t narrowPeak A549 TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis 1 477 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549 POLR2A t\ subGroups tier=a25 cellType=a25A549 factor=POLR2A lab=UT-A\ track wgEncodeAwgTfbsUtaA549Pol2UniPk\ wgEncodeCshlLongRnaSeqBjCellPapJunctions BJ cel pA+ J bed 6 + BJ whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 477 0 0 0 127 127 127 0 0 0 expression 1 longLabel BJ whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel BJ cel pA+ J\ subGroups view=Junctions cellType=t3BJ localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqBjCellPapJunctions\ type bed 6 +\ wgEncodeSydhTfbsHelas3Tr4StdSig HeLa TR4 Std bigWig 0.000000 8476.299805 HeLa-S3 TR4 Standard ChIP-seq Signal from ENCODE/SYDH 2 477 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 TR4 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa TR4 Std\ subGroups view=Signal factor=TR4 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Tr4StdSig\ type bigWig 0.000000 8476.299805\ wgEncodeUwHistoneHreH3k4me3StdRawRep1 HRE H3K4M3 Sg 1 bigWig 1.000000 997.000000 HRE H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 477 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRE H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HRE H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HRE rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHreH3k4me3StdRawRep1\ type bigWig 1.000000 997.000000\ encTfChipPkENCFF453XKM IMR-90 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in IMR-90 from ENCODE 3 (ENCFF453XKM) 1 477 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in IMR-90 from ENCODE 3 (ENCFF453XKM)\ parent encTfChipPk off\ shortLabel IMR-90 CTCF\ subGroups cellType=IMR-90 factor=CTCF\ track encTfChipPkENCFF453XKM\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_forward 0 477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep1.CNhs13829.13436-144E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13436-144E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_forward 1 477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep1.CNhs13829.13436-144E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13436-144E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Thap1sc98174V0416101PkRep2 K562 THAP1 V101 2 broadPeak K562 THAP1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 477 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 THAP1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 THAP1 V101 2\ subGroups view=Peaks factor=THAP1SC98174 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Thap1sc98174V0416101PkRep2\ type broadPeak\ wgEncodeUwDnaseNhaRawRep2 NH-A Sg 2 bigWig 1.000000 18410.000000 NH-A DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 477 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NH-A DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel NH-A Sg 2\ subGroups view=zRSig cellType=t3NHA rep=rep2 treatment=None\ track wgEncodeUwDnaseNhaRawRep2\ type bigWig 1.000000 18410.000000\ wgEncodeBroadHistoneNhdfadH3k9acStdSig NHDF-Ad H3K9ac bigWig 0.040000 14526.120117 NHDF-Ad H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 477 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHDF-Ad H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHDF-Ad H3K9ac\ subGroups view=Signal factor=H3K09AC cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k9acStdSig\ type bigWig 0.040000 14526.120117\ wgEncodeAwgTfbsSydhA549Rad21IggrabUniPk A549 RAD21 narrowPeak A549 TFBS Uniform Peaks of Rad21 from ENCODE/Stanford/Analysis 1 478 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 TFBS Uniform Peaks of Rad21 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549 RAD21\ subGroups tier=a25 cellType=a25A549 factor=RAD21 lab=Stanford\ track wgEncodeAwgTfbsSydhA549Rad21IggrabUniPk\ wgEncodeCshlLongRnaSeqBjCellPapMinusRawSigRep1 BJ cel pA+ - 1 bigWig 1.000000 840503.000000 BJ whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 478 0 0 0 127 127 127 0 0 0 expression 0 longLabel BJ whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel BJ cel pA+ - 1\ subGroups view=MinusSignal cellType=t3BJ localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqBjCellPapMinusRawSigRep1\ type bigWig 1.000000 840503.000000\ wgEncodeSydhTfbsHelas3Usf2IggmusPk HeLa USF2 IgM narrowPeak HeLa-S3 USF2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 478 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 USF2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa USF2 IgM\ subGroups view=Peaks factor=USF2 cellType=t2HELAS3 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsHelas3Usf2IggmusPk\ type narrowPeak\ wgEncodeUwHistoneHreH3k4me3StdHotspotsRep2 HRE H3K4M3 Ht 2 broadPeak HRE H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 478 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HRE H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HRE rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHreH3k4me3StdHotspotsRep2\ type broadPeak\ encTfChipPkENCFF757YVY IMR-90 ELK1 narrowPeak Transcription Factor ChIP-seq Peaks of ELK1 in IMR-90 from ENCODE 3 (ENCFF757YVY) 1 478 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ELK1 in IMR-90 from ENCODE 3 (ENCFF757YVY)\ parent encTfChipPk off\ shortLabel IMR-90 ELK1\ subGroups cellType=IMR-90 factor=ELK1\ track encTfChipPkENCFF757YVY\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_reverse 0 478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep1.CNhs13829.13436-144E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13436-144E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_tpm_rev IpsToNeuronControlDnC11-CRL2429Day18R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_reverse 1 478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep1.CNhs13829.13436-144E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13436-144E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Thap1sc98174V0416101RawRep2 K562 THAP1 V101 2 bigWig 0.244118 195.598999 K562 THAP1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 478 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 THAP1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 THAP1 V101 2\ subGroups view=RawSignal factor=THAP1SC98174 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Thap1sc98174V0416101RawRep2\ type bigWig 0.244118 195.598999\ wgEncodeUwDnaseNhberaHotspotsRep1 NHBE RA Ht 1 broadPeak NHBE RA DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 478 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHBE RA DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel NHBE RA Ht 1\ subGroups view=Hot cellType=t3NHBERA rep=rep1 treatment=None\ track wgEncodeUwDnaseNhberaHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneNhdfadH3k09me3Pk NHDF-Ad H3K9m3 broadPeak NHDF-Ad H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 478 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHDF-Ad H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHDF-Ad H3K9m3\ subGroups view=Peaks factor=H3K09ME3 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k09me3Pk\ type broadPeak\ wgEncodeAwgTfbsHaibA549NrsfV0422111Etoh02UniPk A549+Et.02 REST narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of NRSF from ENCODE/HudsonAlpha/Analysis 1 479 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of NRSF from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Et.02 REST\ subGroups tier=a25 cellType=a25A549 factor=REST lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549NrsfV0422111Etoh02UniPk\ wgEncodeCshlLongRnaSeqBjCellPapMinusRawSigRep2 BJ cel pA+ - 2 bigWig 1.000000 423113.000000 BJ whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 479 0 0 0 127 127 127 0 0 0 expression 0 longLabel BJ whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel BJ cel pA+ - 2\ subGroups view=MinusSignal cellType=t3BJ localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqBjCellPapMinusRawSigRep2\ type bigWig 1.000000 423113.000000\ wgEncodeSydhTfbsHelas3Usf2IggmusSig HeLa USF2 IgM bigWig 1.000000 9221.000000 HeLa-S3 USF2 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 479 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 USF2 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa USF2 IgM\ subGroups view=Signal factor=USF2 cellType=t2HELAS3 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsHelas3Usf2IggmusSig\ type bigWig 1.000000 9221.000000\ wgEncodeUwHistoneHreH3k4me3StdPkRep2 HRE H3K4M3 Pk 2 narrowPeak HRE H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 479 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HRE H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HRE rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHreH3k4me3StdPkRep2\ type narrowPeak\ encTfChipPkENCFF359IPV IMR-90 FOS narrowPeak Transcription Factor ChIP-seq Peaks of FOS in IMR-90 from ENCODE 3 (ENCFF359IPV) 1 479 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOS in IMR-90 from ENCODE 3 (ENCFF359IPV)\ parent encTfChipPk off\ shortLabel IMR-90 FOS\ subGroups cellType=IMR-90 factor=FOS\ track encTfChipPkENCFF359IPV\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_forward 0 479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep2.CNhs13842.13440-144F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13440-144F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_forward 1 479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep2.CNhs13842.13440-144F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13440-144F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Trim28sc81411V0422111PkRep1 K562 TRIM28 V11 1 broadPeak K562 TRIM28 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 479 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TRIM28 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 TRIM28 V11 1\ subGroups view=Peaks factor=TRIM28SC81411 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Trim28sc81411V0422111PkRep1\ type broadPeak\ wgEncodeUwDnaseNhberaPkRep1 NHBE RA Pk 1 narrowPeak NHBE RA DNaseI HS Peaks Rep 1 from ENCODE/UW 1 479 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHBE RA DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel NHBE RA Pk 1\ subGroups view=Peaks cellType=t3NHBERA rep=rep1 treatment=None\ track wgEncodeUwDnaseNhberaPkRep1\ type narrowPeak\ wgEncodeBroadHistoneNhdfadH3k09me3Sig NHDF-Ad H3K9m3 bigWig 0.040000 47121.320312 NHDF-Ad H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 479 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHDF-Ad H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHDF-Ad H3K9m3\ subGroups view=Signal factor=H3K09ME3 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k09me3Sig\ type bigWig 0.040000 47121.320312\ wgEncodeAwgTfbsHaibA549Sin3ak20V0422111Etoh02UniPk A549+E2 SIN3AK20 narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of Sin3Ak-20 from ENCODE/HudsonAlpha/Analysis 1 480 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of Sin3Ak-20 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+E2 SIN3AK20\ subGroups tier=a25 cellType=a25A549 factor=SIN3AK20 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Sin3ak20V0422111Etoh02UniPk\ wgEncodeCshlLongRnaSeqBjCellPapPlusRawSigRep1 BJ cel pA+ + 1 bigWig 1.000000 547029.000000 BJ whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 480 0 0 0 127 127 127 0 0 0 expression 0 longLabel BJ whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel BJ cel pA+ + 1\ subGroups view=PlusSignal cellType=t3BJ localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqBjCellPapPlusRawSigRep1\ type bigWig 1.000000 547029.000000\ wgEncodeSydhTfbsHelas3Zkscan1hpa006672IggrabPk HeLa ZKSCN1 IgR narrowPeak HeLa-S3 ZKSCAN1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 480 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 ZKSCAN1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa ZKSCN1 IgR\ subGroups view=Peaks factor=ZKSCAN1HPA006672 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Zkscan1hpa006672IggrabPk\ type narrowPeak\ wgEncodeUwHistoneHreH3k4me3StdRawRep2 HRE H3K4M3 Sg 2 bigWig 1.000000 1485.000000 HRE H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 480 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRE H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HRE H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HRE rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHreH3k4me3StdRawRep2\ type bigWig 1.000000 1485.000000\ encTfChipPkENCFF593MEB IMR-90 MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in IMR-90 from ENCODE 3 (ENCFF593MEB) 1 480 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MAFK in IMR-90 from ENCODE 3 (ENCFF593MEB)\ parent encTfChipPk on\ shortLabel IMR-90 MAFK\ subGroups cellType=IMR-90 factor=MAFK\ track encTfChipPkENCFF593MEB\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_reverse 0 480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep2.CNhs13842.13440-144F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13440-144F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_tpm_rev IpsToNeuronControlDnC11-CRL2429Day18R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_reverse 1 480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep2.CNhs13842.13440-144F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13440-144F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Trim28sc81411V0422111RawRep1 K562 TRIM28 V11 1 bigWig 1.000000 6390.000000 K562 TRIM28 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 480 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 TRIM28 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 TRIM28 V11 1\ subGroups view=RawSignal factor=TRIM28SC81411 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Trim28sc81411V0422111RawRep1\ type bigWig 1.000000 6390.000000\ wgEncodeUwDnaseNhberaRawRep1 NHBE RA Sg 1 bigWig 1.000000 55859.000000 NHBE RA DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 480 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHBE RA DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel NHBE RA Sg 1\ subGroups view=zRSig cellType=t3NHBERA rep=rep1 treatment=None\ track wgEncodeUwDnaseNhberaRawRep1\ type bigWig 1.000000 55859.000000\ wgEncodeBroadHistoneNhdfadH3k27acStdPk NHDF-Ad H3K27ac broadPeak NHDF-Ad H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 480 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHDF-Ad H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHDF-Ad H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k27acStdPk\ type broadPeak\ wgEncodeAwgTfbsHaibA549Six5V0422111Etoh02UniPk A549+Et.02 SIX5 narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of SIX5 from ENCODE/HudsonAlpha/Analysis 1 481 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of SIX5 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Et.02 SIX5\ subGroups tier=a25 cellType=a25A549 factor=SIX5 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Six5V0422111Etoh02UniPk\ wgEncodeCshlLongRnaSeqBjCellPapPlusRawSigRep2 BJ cel pA+ + 2 bigWig 1.000000 298791.000000 BJ whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 481 0 0 0 127 127 127 0 0 0 expression 0 longLabel BJ whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel BJ cel pA+ + 2\ subGroups view=PlusSignal cellType=t3BJ localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqBjCellPapPlusRawSigRep2\ type bigWig 1.000000 298791.000000\ wgEncodeSydhTfbsHelas3Zkscan1hpa006672IggrabSig HeLa ZKSCN1 IgR bigWig 1.000000 17341.000000 HeLa-S3 ZKSCAN1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 481 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 ZKSCAN1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa ZKSCN1 IgR\ subGroups view=Signal factor=ZKSCAN1HPA006672 cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Zkscan1hpa006672IggrabSig\ type bigWig 1.000000 17341.000000\ wgEncodeUwHistoneHreH3k27me3StdHotspotsRep1 HRE H3K27M3 Ht 1 broadPeak HRE H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 481 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HRE H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t3HRE rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHreH3k27me3StdHotspotsRep1\ type broadPeak\ encTfChipPkENCFF641RNZ IMR-90 NFE2L2 narrowPeak Transcription Factor ChIP-seq Peaks of NFE2L2 in IMR-90 from ENCODE 3 (ENCFF641RNZ) 1 481 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NFE2L2 in IMR-90 from ENCODE 3 (ENCFF641RNZ)\ parent encTfChipPk off\ shortLabel IMR-90 NFE2L2\ subGroups cellType=IMR-90 factor=NFE2L2\ track encTfChipPkENCFF641RNZ\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_forward 0 481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep3.CNhs14055.13444-144F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13444-144F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_forward 1 481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep3.CNhs14055.13444-144F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13444-144F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Trim28sc81411V0422111PkRep2 K562 TRIM28 V11 2 broadPeak K562 TRIM28 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 481 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 TRIM28 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 TRIM28 V11 2\ subGroups view=Peaks factor=TRIM28SC81411 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Trim28sc81411V0422111PkRep2\ type broadPeak\ wgEncodeUwDnaseNhberaHotspotsRep2 NHBE RA Ht 2 broadPeak NHBE RA DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 481 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHBE RA DNaseI HS HotSpots Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel NHBE RA Ht 2\ subGroups view=Hot cellType=t3NHBERA rep=rep2 treatment=None\ track wgEncodeUwDnaseNhberaHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneNhdfadH3k27acStdSig NHDF-Ad H3K27ac bigWig 0.040000 12216.320312 NHDF-Ad H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 481 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHDF-Ad H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHDF-Ad H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k27acStdSig\ type bigWig 0.040000 12216.320312\ wgEncodeAwgTfbsHaibA549Taf1V0422111Etoh02UniPk A549+Et.02 TAF1 narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis 1 482 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Et.02 TAF1\ subGroups tier=a25 cellType=a25A549 factor=TAF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Taf1V0422111Etoh02UniPk\ wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalAlnRep1 CD34 cel tot A 1 bam CD34+ Mobilized whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 482 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD34+ Mobilized whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel CD34 cel tot A 1\ subGroups view=Alignments cellType=t3CD34MOBILIZED localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalAlnRep1\ type bam\ wgEncodeSydhTfbsHelas3Znf143IggrabPk HeLa Z143 IgR narrowPeak HeLa-S3 Znf143 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 482 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 Znf143 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa Z143 IgR\ subGroups view=Peaks factor=ZNF143166181AP cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Znf143IggrabPk\ type narrowPeak\ wgEncodeUwHistoneHreH3k27me3StdPkRep1 HRE H3K27M3 Pk 1 narrowPeak HRE H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 482 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HRE H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t3HRE rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHreH3k27me3StdPkRep1\ type narrowPeak\ encTfChipPkENCFF195CYT IMR-90 RAD21 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in IMR-90 from ENCODE 3 (ENCFF195CYT) 1 482 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in IMR-90 from ENCODE 3 (ENCFF195CYT)\ parent encTfChipPk off\ shortLabel IMR-90 RAD21\ subGroups cellType=IMR-90 factor=RAD21\ track encTfChipPkENCFF195CYT\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_reverse 0 482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep3.CNhs14055.13444-144F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13444-144F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_tpm_rev IpsToNeuronControlDnC11-CRL2429Day18R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_reverse 1 482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep3.CNhs14055.13444-144F6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13444-144F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsK562Trim28sc81411V0422111RawRep2 K562 TRIM28 V11 2 bigWig 1.000000 2390.000000 K562 TRIM28 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 482 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 TRIM28 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 TRIM28 V11 2\ subGroups view=RawSignal factor=TRIM28SC81411 cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Trim28sc81411V0422111RawRep2\ type bigWig 1.000000 2390.000000\ wgEncodeUwDnaseNhberaPkRep2 NHBE RA Pk 2 narrowPeak NHBE RA DNaseI HS Peaks Rep 2 from ENCODE/UW 1 482 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHBE RA DNaseI HS Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel NHBE RA Pk 2\ subGroups view=Peaks cellType=t3NHBERA rep=rep2 treatment=None\ track wgEncodeUwDnaseNhberaPkRep2\ type narrowPeak\ wgEncodeBroadHistoneNhdfadH3k27me3StdPk NHDF-Ad H3K27m3 broadPeak NHDF-Ad H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 482 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHDF-Ad H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHDF-Ad H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k27me3StdPk\ type broadPeak\ wgEncodeAwgTfbsHaibA549Tcf12V0422111Etoh02UniPk A549+Et.02 TCF12 narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of TCF12 from ENCODE/HudsonAlpha/Analysis 1 483 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of TCF12 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Et.02 TCF12\ subGroups tier=a25 cellType=a25A549 factor=TCF12 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Tcf12V0422111Etoh02UniPk\ wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalContigs CD34 cel tot C bed 6 + CD34+ Mobilized whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 483 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD34+ Mobilized whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel CD34 cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3CD34MOBILIZED localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalContigs\ type bed 6 +\ wgEncodeSydhTfbsHelas3Znf143IggrabSig HeLa Z143 IgR bigWig 1.000000 16407.000000 HeLa-S3 Znf143 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 483 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Znf143 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa Z143 IgR\ subGroups view=Signal factor=ZNF143166181AP cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3Znf143IggrabSig\ type bigWig 1.000000 16407.000000\ wgEncodeUwHistoneHreH3k27me3StdRawRep1 HRE H3K27M3 Sg 1 bigWig 1.000000 4006.000000 HRE H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 483 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRE H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HRE H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t3HRE rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHreH3k27me3StdRawRep1\ type bigWig 1.000000 4006.000000\ encTfChipPkENCFF116RLU IMR-90 SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in IMR-90 from ENCODE 3 (ENCFF116RLU) 1 483 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SMC3 in IMR-90 from ENCODE 3 (ENCFF116RLU)\ parent encTfChipPk off\ shortLabel IMR-90 SMC3\ subGroups cellType=IMR-90 factor=SMC3\ track encTfChipPkENCFF116RLU\ wgEncodeHaibTfbsK562Usf1V0416101PkRep1 K562 USF1 V101 1 broadPeak K562 USF-1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 483 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 USF-1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel K562 USF1 V101 1\ subGroups view=Peaks factor=USF1 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Usf1V0416101PkRep1\ type broadPeak\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_forward 0 483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%201%29.CNhs11936.12260-130A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12260-130A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_forward 1 483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%201%29.CNhs11936.12260-130A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12260-130A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseNhberaRawRep2 NHBE RA Sg 2 bigWig 1.000000 74173.000000 NHBE RA DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 483 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHBE RA DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel NHBE RA Sg 2\ subGroups view=zRSig cellType=t3NHBERA rep=rep2 treatment=None\ track wgEncodeUwDnaseNhberaRawRep2\ type bigWig 1.000000 74173.000000\ wgEncodeBroadHistoneNhdfadH3k27me3StdSig NHDF-Ad H3K27m3 bigWig 0.040000 16666.439453 NHDF-Ad H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 483 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHDF-Ad H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHDF-Ad H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k27me3StdSig\ type bigWig 0.040000 16666.439453\ wgEncodeAwgTfbsHaibA549Usf1Pcr1xDex100nmUniPk A549+Dx100n USF1 narrowPeak A549 (DEX_100nM) TFBS Uniform Peaks of USF-1 from ENCODE/HudsonAlpha/Analysis 1 484 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (DEX_100nM) TFBS Uniform Peaks of USF-1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Dx100n USF1\ subGroups tier=a25 cellType=a25A549 factor=USF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Usf1Pcr1xDex100nmUniPk\ wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalJunctions CD34 cel tot J bed 6 + CD34+ Mobilized whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 484 0 0 0 127 127 127 0 0 0 expression 1 longLabel CD34+ Mobilized whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel CD34 cel tot J\ subGroups view=Junctions cellType=t3CD34MOBILIZED localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalJunctions\ type bed 6 +\ wgEncodeSydhTfbsHelas3Znf274UcdPk HeLa Z274 UCD narrowPeak HeLa-S3 ZNF274 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 484 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 ZNF274 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa Z274 UCD\ subGroups view=Peaks factor=ZNF274 cellType=t2HELAS3 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Znf274UcdPk\ type narrowPeak\ wgEncodeUwHistoneHreH3k27me3StdHotspotsRep2 HRE H3K27M3 Ht 2 broadPeak HRE H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 484 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HRE H3K27M3 Ht 2\ subGroups view=Hot factor=H3K27ME3 cellType=t3HRE rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHreH3k27me3StdHotspotsRep2\ type broadPeak\ encTfChipPkENCFF759MVB IMR-90 USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in IMR-90 from ENCODE 3 (ENCFF759MVB) 1 484 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of USF2 in IMR-90 from ENCODE 3 (ENCFF759MVB)\ parent encTfChipPk off\ shortLabel IMR-90 USF2\ subGroups cellType=IMR-90 factor=USF2\ track encTfChipPkENCFF759MVB\ wgEncodeHaibTfbsK562Usf1V0416101RawRep1 K562 USF1 V101 1 bigWig 0.224811 219.022003 K562 USF-1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 484 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 USF-1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel K562 USF1 V101 1\ subGroups view=RawSignal factor=USF1 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Usf1V0416101RawRep1\ type bigWig 0.224811 219.022003\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_ctss_rev LymphaticEndothelialCellsToVegfc_00hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_reverse 0 484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%201%29.CNhs11936.12260-130A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12260-130A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_tpm_rev LymphaticEndothelialCellsToVegfc_00hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_reverse 1 484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%201%29.CNhs11936.12260-130A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12260-130A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneNhdfadH3k36me3StdPk NHDF-Ad H3K36m3 broadPeak NHDF-Ad H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 484 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHDF-Ad H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHDF-Ad H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k36me3StdPk\ type broadPeak\ wgEncodeUwDnaseNhdfadHotspotsRep1 NHDFAd Ht 1 broadPeak NHDF-Ad DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 484 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-Ad DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel NHDFAd Ht 1\ subGroups view=Hot cellType=t3NHDFAD rep=rep1 treatment=None\ track wgEncodeUwDnaseNhdfadHotspotsRep1\ type broadPeak\ wgEncodeAwgTfbsHaibA549Usf1Pcr1xEtoh02UniPk A549+Et02 USF1 h1 narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of USF-1 (P:Pcr1) ENCODE/HudsonAlpha/Analysis 1 485 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of USF-1 (P:Pcr1) ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Et02 USF1 h1\ subGroups tier=a25 cellType=a25A549 factor=USF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Usf1Pcr1xEtoh02UniPk\ wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalMinusRep1 CD34 cel tot - 1 bigWig 1.000000 10512010.000000 CD34+ Mobilized whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 485 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD34+ Mobilized whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel CD34 cel tot - 1\ subGroups view=MinusSignal cellType=t3CD34MOBILIZED localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalMinusRep1\ type bigWig 1.000000 10512010.000000\ wgEncodeSydhTfbsHelas3Znf274UcdSig HeLa Z274 UCD bigWig 1.000000 10876.000000 HeLa-S3 ZNF274 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 485 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 ZNF274 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa Z274 UCD\ subGroups view=Signal factor=ZNF274 cellType=t2HELAS3 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Znf274UcdSig\ type bigWig 1.000000 10876.000000\ wgEncodeUwHistoneHreH3k27me3StdPkRep2 HRE H3K27M3 Pk 2 narrowPeak HRE H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 485 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HRE H3K27M3 Pk 2\ subGroups view=Peaks factor=H3K27ME3 cellType=t3HRE rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHreH3k27me3StdPkRep2\ type narrowPeak\ encTfChipPkENCFF296XCF Ishikawa CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Ishikawa from ENCODE 3 (ENCFF296XCF) 1 485 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Ishikawa from ENCODE 3 (ENCFF296XCF)\ parent encTfChipPk off\ shortLabel Ishikawa CTCF\ subGroups cellType=Ishikawa factor=CTCF\ track encTfChipPkENCFF296XCF\ wgEncodeHaibTfbsK562Usf1V0416101PkRep2 K562 USF1 V101 2 broadPeak K562 USF-1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 485 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 USF-1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks on\ shortLabel K562 USF1 V101 2\ subGroups view=Peaks factor=USF1 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Usf1V0416101PkRep2\ type broadPeak\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_forward 0 485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%201%29.CNhs13157.12382-131E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12382-131E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_forward 1 485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%201%29.CNhs13157.12382-131E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12382-131E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneNhdfadH3k36me3StdSig NHDF-Ad H3K36m3 bigWig 0.040000 24724.080078 NHDF-Ad H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 485 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHDF-Ad H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHDF-Ad H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k36me3StdSig\ type bigWig 0.040000 24724.080078\ wgEncodeUwDnaseNhdfadPkRep1 NHDFAd Pk 1 narrowPeak NHDF-Ad DNaseI HS Peaks Rep 1 from ENCODE/UW 1 485 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-Ad DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel NHDFAd Pk 1\ subGroups view=Peaks cellType=t3NHDFAD rep=rep1 treatment=None\ track wgEncodeUwDnaseNhdfadPkRep1\ type narrowPeak\ wgEncodeAwgTfbsHaibA549Usf1V0422111Etoh02UniPk A549+Et02 USF1 h2 narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of USF-1 (P:V042) ENCODE/HudsonAlpha/Analysis 1 486 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of USF-1 (P:V042) ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Et02 USF1 h2\ subGroups tier=a25 cellType=a25A549 factor=USF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Usf1V0422111Etoh02UniPk\ wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalPlusRep1 CD34 cel tot + 1 bigWig 1.000000 17965708.000000 CD34+ Mobilized whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 486 0 0 0 127 127 127 0 0 0 expression 0 longLabel CD34+ Mobilized whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel CD34 cel tot + 1\ subGroups view=PlusSignal cellType=t3CD34MOBILIZED localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalPlusRep1\ type bigWig 1.000000 17965708.000000\ wgEncodeSydhTfbsHelas3Zzz3StdPk HeLa ZZZ3 Std narrowPeak HeLa-S3 ZZZ3 Standard ChIP-seq Peaks from ENCODE/SYDH 3 486 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 ZZZ3 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HeLa ZZZ3 Std\ subGroups view=Peaks factor=ZZZ3 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Zzz3StdPk\ type narrowPeak\ wgEncodeUwHistoneHreH3k27me3StdRawRep2 HRE H3K27M3 Sg 2 bigWig 1.000000 2575.000000 HRE H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 486 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRE H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HRE H3K27M3 Sg 2\ subGroups view=zRSig factor=H3K27ME3 cellType=t3HRE rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHreH3k27me3StdRawRep2\ type bigWig 1.000000 2575.000000\ encTfChipPkENCFF276MQI Ishikawa ESR1 1 narrowPeak Transcription Factor ChIP-seq Peaks of ESR1 in Ishikawa from ENCODE 3 (ENCFF276MQI) 1 486 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESR1 in Ishikawa from ENCODE 3 (ENCFF276MQI)\ parent encTfChipPk off\ shortLabel Ishikawa ESR1 1\ subGroups cellType=Ishikawa factor=ESR1\ track encTfChipPkENCFF276MQI\ wgEncodeHaibTfbsK562Usf1V0416101RawRep2 K562 USF1 V101 2 bigWig 0.424136 232.108002 K562 USF-1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 486 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 USF-1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal on\ shortLabel K562 USF1 V101 2\ subGroups view=RawSignal factor=USF1 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Usf1V0416101RawRep2\ type bigWig 0.424136 232.108002\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_ctss_rev LymphaticEndothelialCellsToVegfc_00hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_reverse 0 486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%201%29.CNhs13157.12382-131E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12382-131E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_tpm_rev LymphaticEndothelialCellsToVegfc_00hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_reverse 1 486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%201%29.CNhs13157.12382-131E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12382-131E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneNhdfadH3k79me2Pk NHDF-Ad H3K79m2 broadPeak NHDF-Ad H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 486 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHDF-Ad H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHDF-Ad H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k79me2Pk\ type broadPeak\ wgEncodeUwDnaseNhdfadRawRep1 NHDFAd Sg 1 bigWig 1.000000 16582.000000 NHDF-Ad DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 486 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHDF-Ad DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel NHDFAd Sg 1\ subGroups view=zRSig cellType=t3NHDFAD rep=rep1 treatment=None\ track wgEncodeUwDnaseNhdfadRawRep1\ type bigWig 1.000000 16582.000000\ wgEncodeAwgTfbsHaibA549Yy1cV0422111Etoh02UniPk A549+Et.02 YY1 narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of YY1_(SC-281) ENCODE/HudsonAlpha/Analysis 1 487 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of YY1_(SC-281) ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Et.02 YY1\ subGroups tier=a25 cellType=a25A549 factor=YY1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Yy1cV0422111Etoh02UniPk\ wgEncodeCshlLongRnaSeqHaoafCellTotalAlnRep1 HAoAF cel tot A 1 bam HAoAF whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 487 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAoAF whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HAoAF cel tot A 1\ subGroups view=Alignments cellType=t3HAOAF localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHaoafCellTotalAlnRep1\ type bam\ wgEncodeSydhTfbsHelas3Zzz3StdSig HeLa ZZZ3 Std bigWig 1.000000 6434.000000 HeLa-S3 ZZZ3 Standard ChIP-seq Signal from ENCODE/SYDH 2 487 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 ZZZ3 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa ZZZ3 Std\ subGroups view=Signal factor=ZZZ3 cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3Zzz3StdSig\ type bigWig 1.000000 6434.000000\ wgEncodeUwHistoneHreH3k36me3StdHotspotsRep1 HRE H3K36M3 Ht 1 broadPeak HRE H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 487 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HRE H3K36M3 Ht 1\ subGroups view=Hot factor=H3K36ME3 cellType=t3HRE rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHreH3k36me3StdHotspotsRep1\ type broadPeak\ encTfChipPkENCFF248QIW Ishikawa ESR1 2 narrowPeak Transcription Factor ChIP-seq Peaks of ESR1 in Ishikawa from ENCODE 3 (ENCFF248QIW) 1 487 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESR1 in Ishikawa from ENCODE 3 (ENCFF248QIW)\ parent encTfChipPk off\ shortLabel Ishikawa ESR1 2\ subGroups cellType=Ishikawa factor=ESR1\ track encTfChipPkENCFF248QIW\ wgEncodeHaibTfbsK562Yy1V0416102PkRep1 K562 YY1 V102 1 broadPeak K562 YY1 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 487 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 YY1 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 YY1 V102 1\ subGroups view=Peaks factor=YY1 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Yy1V0416102PkRep1\ type broadPeak\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_forward 0 487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%201%20%29.CNhs13276.12504-133A2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12504-133A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_forward 1 487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%201%20%29.CNhs13276.12504-133A2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12504-133A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneNhdfadH3k79me2Sig NHDF-Ad H3K79m2 bigWig 0.040000 9921.000000 NHDF-Ad H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 487 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHDF-Ad H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHDF-Ad H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH3k79me2Sig\ type bigWig 0.040000 9921.000000\ wgEncodeUwDnaseNhdfadHotspotsRep2 NHDFAd Ht 2 broadPeak NHDF-Ad DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 487 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-Ad DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel NHDFAd Ht 2\ subGroups view=Hot cellType=t3NHDFAD rep=rep2 treatment=None\ track wgEncodeUwDnaseNhdfadHotspotsRep2\ type broadPeak\ wgEncodeAwgTfbsHaibA549Zbtb33V0422111Etoh02UniPk A549+Et.02 ZBTB33 narrowPeak A549 (EtOH .02) TFBS Uniform Peaks of ZBTB33 from ENCODE/HudsonAlpha/Analysis 1 488 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 (EtOH .02) TFBS Uniform Peaks of ZBTB33 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel A549+Et.02 ZBTB33\ subGroups tier=a25 cellType=a25A549 factor=ZBTB33 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibA549Zbtb33V0422111Etoh02UniPk\ wgEncodeCshlLongRnaSeqHaoaf609010111CellTotalAlnRep2 HAoAF cel tot A 2 bam HAoAF whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 488 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAoAF whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HAoAF cel tot A 2\ subGroups view=Alignments cellType=t3HAOAF localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHaoaf609010111CellTotalAlnRep2\ type bam\ wgEncodeSydhTfbsHelas3InputIggmusSig HeLa Inpt IgM bigWig 0.000000 8996.000000 HeLa-S3 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 488 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa Inpt IgM\ subGroups view=Signal factor=ZZZINPUTIGGmus cellType=t2HELAS3 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsHelas3InputIggmusSig\ type bigWig 0.000000 8996.000000\ wgEncodeUwHistoneHreH3k36me3StdPkRep1 HRE H3K36M3 Pk 1 narrowPeak HRE H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 488 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HRE H3K36M3 Pk 1\ subGroups view=Peaks factor=H3K36ME3 cellType=t3HRE rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHreH3k36me3StdPkRep1\ type narrowPeak\ encTfChipPkENCFF078ATU Ishikawa ESR1 3 narrowPeak Transcription Factor ChIP-seq Peaks of ESR1 in Ishikawa from ENCODE 3 (ENCFF078ATU) 1 488 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESR1 in Ishikawa from ENCODE 3 (ENCFF078ATU)\ parent encTfChipPk off\ shortLabel Ishikawa ESR1 3\ subGroups cellType=Ishikawa factor=ESR1\ track encTfChipPkENCFF078ATU\ wgEncodeHaibTfbsK562Yy1V0416102RawRep1 K562 YY1 V102 1 bigWig 0.361035 618.273010 K562 YY1 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 488 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 YY1 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 YY1 V102 1\ subGroups view=RawSignal factor=YY1 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Yy1V0416102RawRep1\ type bigWig 0.361035 618.273010\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_ctss_rev LymphaticEndothelialCellsToVegfc_00hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_reverse 0 488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%201%20%29.CNhs13276.12504-133A2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12504-133A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_tpm_rev LymphaticEndothelialCellsToVegfc_00hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_reverse 1 488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%201%20%29.CNhs13276.12504-133A2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12504-133A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneNhdfadH4k20me1Pk NHDF-Ad H4K20m1 broadPeak NHDF-Ad H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 488 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHDF-Ad H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHDF-Ad H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH4k20me1Pk\ type broadPeak\ wgEncodeUwDnaseNhdfadPkRep2 NHDFAd Pk 2 narrowPeak NHDF-Ad DNaseI HS Peaks Rep 2 from ENCODE/UW 1 488 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-Ad DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel NHDFAd Pk 2\ subGroups view=Peaks cellType=t3NHDFAD rep=rep2 treatment=None\ track wgEncodeUwDnaseNhdfadPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHaoafCellTotalContigs HAoAF cel tot C bed 6 + HAoAF whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 489 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAoAF whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HAoAF cel tot C\ subGroups view=Contigs cellType=t3HAOAF localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHaoafCellTotalContigs\ type bed 6 +\ wgEncodeSydhTfbsHelas3InputIggrabSig HeLa Inpt IgR bigWig 0.000000 8775.099609 HeLa-S3 Input IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 489 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Input IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t2HELAS3 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHelas3InputIggrabSig\ type bigWig 0.000000 8775.099609\ wgEncodeUwHistoneHreH3k36me3StdRawRep1 HRE H3K36M3 Sg 1 bigWig 1.000000 4359.000000 HRE H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 489 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRE H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HRE H3K36M3 Sg 1\ subGroups view=zRSig factor=H3K36ME3 cellType=t3HRE rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHreH3k36me3StdRawRep1\ type bigWig 1.000000 4359.000000\ wgEncodeAwgTfbsSydhImr90CebpbIggrabUniPk IMR90 CEBPB narrowPeak IMR90 TFBS Uniform Peaks of CEBPB from ENCODE/Stanford/Analysis 1 489 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 TFBS Uniform Peaks of CEBPB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel IMR90 CEBPB\ subGroups tier=a25 cellType=a25IMR90 factor=CEBPB lab=Stanford\ track wgEncodeAwgTfbsSydhImr90CebpbIggrabUniPk\ encTfChipPkENCFF750JOB Ishikawa NR3C1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in Ishikawa from ENCODE 3 (ENCFF750JOB) 1 489 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in Ishikawa from ENCODE 3 (ENCFF750JOB)\ parent encTfChipPk off\ shortLabel Ishikawa NR3C1 1\ subGroups cellType=Ishikawa factor=NR3C1\ track encTfChipPkENCFF750JOB\ wgEncodeHaibTfbsK562Yy1V0416102PkRep2 K562 YY1 V102 2 broadPeak K562 YY1 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 489 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 YY1 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 YY1 V102 2\ subGroups view=Peaks factor=YY1 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Yy1V0416102PkRep2\ type broadPeak\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_forward 0 489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep1%20%28MM%20XIX%20-%202%29.CNhs13100.12261-130A2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12261-130A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_forward 1 489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep1%20%28MM%20XIX%20-%202%29.CNhs13100.12261-130A2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12261-130A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneNhdfadH4k20me1Sig NHDF-Ad H4K20m1 bigWig 0.040000 10031.400391 NHDF-Ad H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 489 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHDF-Ad H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHDF-Ad H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadH4k20me1Sig\ type bigWig 0.040000 10031.400391\ wgEncodeUwDnaseNhdfadRawRep2 NHDFAd Sg 2 bigWig 1.000000 17499.000000 NHDF-Ad DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 489 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHDF-Ad DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel NHDFAd Sg 2\ subGroups view=zRSig cellType=t3NHDFAD rep=rep2 treatment=None\ track wgEncodeUwDnaseNhdfadRawRep2\ type bigWig 1.000000 17499.000000\ wgEncodeCshlLongRnaSeqHaoafCellTotalJunctions HAoAF cel tot J bed 6 + HAoAF whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 490 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAoAF whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HAoAF cel tot J\ subGroups view=Junctions cellType=t3HAOAF localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHaoafCellTotalJunctions\ type bed 6 +\ wgEncodeSydhTfbsHelas3InputLargefragmentSig HeLa Inpt LFrg bigWig 0.000000 11998.299805 HeLa-S3 Input Large Fragment ChIP-seq Signal from ENCODE/SYDH 2 490 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Input Large Fragment ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa Inpt LFrg\ subGroups view=Signal factor=ZZZINPUTLARGE cellType=t2HELAS3 control=LargeFragment treatment=aNONE\ track wgEncodeSydhTfbsHelas3InputLargefragmentSig\ type bigWig 0.000000 11998.299805\ wgEncodeUwHistoneHreH3k36me3StdHotspotsRep2 HRE H3K36M3 Ht 2 broadPeak HRE H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 490 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel HRE H3K36M3 Ht 2\ subGroups view=Hot factor=H3K36ME3 cellType=t3HRE rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHreH3k36me3StdHotspotsRep2\ type broadPeak\ wgEncodeAwgTfbsSydhImr90CtcfbIggrabUniPk IMR90 CTCF narrowPeak IMR90 TFBS Uniform Peaks of CTCF_(SC-15914) from ENCODE/Stanford/Analysis 1 490 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 TFBS Uniform Peaks of CTCF_(SC-15914) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel IMR90 CTCF\ subGroups tier=a25 cellType=a25IMR90 factor=CTCF lab=Stanford\ track wgEncodeAwgTfbsSydhImr90CtcfbIggrabUniPk\ encTfChipPkENCFF585YYZ Ishikawa NR3C1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in Ishikawa from ENCODE 3 (ENCFF585YYZ) 1 490 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in Ishikawa from ENCODE 3 (ENCFF585YYZ)\ parent encTfChipPk off\ shortLabel Ishikawa NR3C1 2\ subGroups cellType=Ishikawa factor=NR3C1\ track encTfChipPkENCFF585YYZ\ wgEncodeHaibTfbsK562Yy1V0416102RawRep2 K562 YY1 V102 2 bigWig 0.170173 150.050003 K562 YY1 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 490 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 YY1 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 YY1 V102 2\ subGroups view=RawSignal factor=YY1 cellType=t1K562 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Yy1V0416102RawRep2\ type bigWig 0.170173 150.050003\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_ctss_rev LymphaticEndothelialCellsToVegfc_00hr15minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_reverse 0 490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep1%20%28MM%20XIX%20-%202%29.CNhs13100.12261-130A2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12261-130A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_tpm_rev LymphaticEndothelialCellsToVegfc_00hr15minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_reverse 1 490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep1%20%28MM%20XIX%20-%202%29.CNhs13100.12261-130A2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12261-130A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneNhdfadControlStdSig NHDF-Ad Input bigWig 0.040000 16604.000000 NHDF-Ad Input Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 490 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHDF-Ad Input Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHDF-Ad Input\ subGroups view=Signal factor=zCTRL cellType=t3NHDFAD treatment=zNONE\ track wgEncodeBroadHistoneNhdfadControlStdSig\ type bigWig 0.040000 16604.000000\ wgEncodeUwDnaseNhdfneoHotspotsRep1 NHDFneo Ht 1 broadPeak NHDF-neo DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 490 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel NHDFneo Ht 1\ subGroups view=Hot cellType=t3NHDFNEO rep=rep1 treatment=None\ track wgEncodeUwDnaseNhdfneoHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHaoafCellTotalMinusSignalRep1 HAoAF cel tot - 1 bigWig 1.000000 7172853.000000 HAoAF whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 491 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoAF whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HAoAF cel tot - 1\ subGroups view=MinusSignal cellType=t3HAOAF localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHaoafCellTotalMinusSignalRep1\ type bigWig 1.000000 7172853.000000\ wgEncodeSydhTfbsHelas3InputMnaseSig HeLa Inpt MNas bigWig 0.000000 25203.800781 HeLa-S3 Input MNase ChIP-seq Signal from ENCODE/SYDH 2 491 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Input MNase ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa Inpt MNas\ subGroups view=Signal factor=ZZZINPUTMNASE cellType=t2HELAS3 control=MNase treatment=aNONE\ track wgEncodeSydhTfbsHelas3InputMnaseSig\ type bigWig 0.000000 25203.800781\ wgEncodeUwHistoneHreH3k36me3StdPkRep2 HRE H3K36M3 Pk 2 narrowPeak HRE H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 491 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HRE H3K36M3 Pk 2\ subGroups view=Peaks factor=H3K36ME3 cellType=t3HRE rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHreH3k36me3StdPkRep2\ type narrowPeak\ wgEncodeAwgTfbsSydhImr90MafkIggrabUniPk IMR90 MAFK narrowPeak IMR90 TFBS Uniform Peaks of MafK_(ab50322) from ENCODE/Stanford/Analysis 1 491 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 TFBS Uniform Peaks of MafK_(ab50322) from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel IMR90 MAFK\ subGroups tier=a25 cellType=a25IMR90 factor=MAFK lab=Stanford\ track wgEncodeAwgTfbsSydhImr90MafkIggrabUniPk\ encTfChipPkENCFF798SFE Ishikawa POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in Ishikawa from ENCODE 3 (ENCFF798SFE) 1 491 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in Ishikawa from ENCODE 3 (ENCFF798SFE)\ parent encTfChipPk off\ shortLabel Ishikawa POLR2A\ subGroups cellType=Ishikawa factor=POLR2A\ track encTfChipPkENCFF798SFE\ wgEncodeHaibTfbsK562Yy1sc281V0416101PkRep1 K562 YY1 V101 1 broadPeak K562 YY1 281 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 491 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 YY1 281 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 YY1 V101 1\ subGroups view=Peaks factor=YY1SC281 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Yy1sc281V0416101PkRep1\ type broadPeak\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_forward 0 491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep2%20%28MM%20XIV%20-%202%29.CNhs13158.12383-131E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12383-131E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_forward 1 491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep2%20%28MM%20XIV%20-%202%29.CNhs13158.12383-131E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12383-131E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseNhdfneoPkRep1 NHDFneo Pk 1 narrowPeak NHDF-neo DNaseI HS Peaks Rep 1 from ENCODE/UW 1 491 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel NHDFneo Pk 1\ subGroups view=Peaks cellType=t3NHDFNEO rep=rep1 treatment=None\ track wgEncodeUwDnaseNhdfneoPkRep1\ type narrowPeak\ wgEncodeBroadHistoneNhekCtcfStdPk NHEK CTCF broadPeak NHEK CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 491 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHEK CTCF\ subGroups view=Peaks factor=CTCF cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekCtcfStdPk\ type broadPeak\ wgEncodeCshlLongRnaSeqHaoaf609010111CellTotalMinusRep2 HAoAF cel tot - 2 bigWig 1.000000 2638971.000000 HAoAF whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 492 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoAF whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HAoAF cel tot - 2\ subGroups view=MinusSignal cellType=t3HAOAF localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHaoaf609010111CellTotalMinusRep2\ type bigWig 1.000000 2638971.000000\ wgEncodeSydhTfbsHelas3InputNakeddnaSig HeLa Inpt NDNA bigWig 0.000000 9010.000000 HeLa-S3 Input Naked DNA ChIP-seq Signal from ENCODE/SYDH 2 492 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Input Naked DNA ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa Inpt NDNA\ subGroups view=Signal factor=ZZZINPUTNAKED cellType=t2HELAS3 control=NakedDNA treatment=aNONE\ track wgEncodeSydhTfbsHelas3InputNakeddnaSig\ type bigWig 0.000000 9010.000000\ wgEncodeUwHistoneHreH3k36me3StdRawRep2 HRE H3K36M3 Sg 2 bigWig 1.000000 4485.000000 HRE H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 492 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRE H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HRE H3K36M3 Sg 2\ subGroups view=zRSig factor=H3K36ME3 cellType=t3HRE rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHreH3k36me3StdRawRep2\ type bigWig 1.000000 4485.000000\ wgEncodeAwgTfbsSydhImr90Pol2IggrabUniPk IMR90 POLR2A narrowPeak IMR90 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis 1 492 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel IMR90 POLR2A\ subGroups tier=a25 cellType=a25IMR90 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhImr90Pol2IggrabUniPk\ encTfChipPkENCFF076MSV K562 AFF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of AFF1 in K562 from ENCODE 3 (ENCFF076MSV) 1 492 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of AFF1 in K562 from ENCODE 3 (ENCFF076MSV)\ parent encTfChipPk off\ shortLabel K562 AFF1 1\ subGroups cellType=K562 factor=AFF1\ track encTfChipPkENCFF076MSV\ wgEncodeHaibTfbsK562Yy1sc281V0416101RawRep1 K562 YY1 V101 1 bigWig 0.333504 1234.709961 K562 YY1 281 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 492 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 YY1 281 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 YY1 V101 1\ subGroups view=RawSignal factor=YY1SC281 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Yy1sc281V0416101RawRep1\ type bigWig 0.333504 1234.709961\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_ctss_rev LymphaticEndothelialCellsToVegfc_00hr15minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_reverse 0 492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep2%20%28MM%20XIV%20-%202%29.CNhs13158.12383-131E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12383-131E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_tpm_rev LymphaticEndothelialCellsToVegfc_00hr15minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_reverse 1 492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep2%20%28MM%20XIV%20-%202%29.CNhs13158.12383-131E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12383-131E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseNhdfneoRawRep1 NHDFneo Sg 1 bigWig 1.000000 36954.000000 NHDF-neo DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 492 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHDF-neo DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel NHDFneo Sg 1\ subGroups view=zRSig cellType=t3NHDFNEO rep=rep1 treatment=None\ track wgEncodeUwDnaseNhdfneoRawRep1\ type bigWig 1.000000 36954.000000\ wgEncodeBroadHistoneNhekCtcfStdSig NHEK CTCF bigWig 0.040000 3664.639893 NHEK CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 492 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHEK CTCF\ subGroups view=Signal factor=CTCF cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekCtcfStdSig\ type bigWig 0.040000 3664.639893\ wgEncodeCshlLongRnaSeqHaoafCellTotalPlusSignalRep1 HAoAF cel tot + 1 bigWig 1.000000 6475461.000000 HAoAF whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 493 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoAF whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HAoAF cel tot + 1\ subGroups view=PlusSignal cellType=t3HAOAF localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHaoafCellTotalPlusSignalRep1\ type bigWig 1.000000 6475461.000000\ wgEncodeSydhTfbsHelas3InputIfng30StdSig HeLa IFg3 Inpt Sd bigWig 0.000000 10035.299805 HeLa-S3 Input Standard IFNg 30min ChIP-seq Signal from ENCODE/SYDH 2 493 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Input Standard IFNg 30min ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa IFg3 Inpt Sd\ subGroups view=Signal factor=ZZZINPUTSTD cellType=t2HELAS3 control=STD treatment=IFNg30\ track wgEncodeSydhTfbsHelas3InputIfng30StdSig\ type bigWig 0.000000 10035.299805\ wgEncodeUwHistoneHreInputStdRawRep1 HRE In Sg 1 bigWig 1.000000 7076.000000 HRE Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 493 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRE Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HRE In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HRE rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHreInputStdRawRep1\ type bigWig 1.000000 7076.000000\ wgEncodeAwgTfbsSydhImr90Rad21IggrabUniPk IMR90 RAD21 narrowPeak IMR90 TFBS Uniform Peaks of Rad21 from ENCODE/Stanford/Analysis 1 493 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 TFBS Uniform Peaks of Rad21 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel IMR90 RAD21\ subGroups tier=a25 cellType=a25IMR90 factor=RAD21 lab=Stanford\ track wgEncodeAwgTfbsSydhImr90Rad21IggrabUniPk\ encTfChipPkENCFF360BTO K562 AFF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of AFF1 in K562 from ENCODE 3 (ENCFF360BTO) 1 493 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of AFF1 in K562 from ENCODE 3 (ENCFF360BTO)\ parent encTfChipPk off\ shortLabel K562 AFF1 2\ subGroups cellType=K562 factor=AFF1\ track encTfChipPkENCFF360BTO\ wgEncodeHaibTfbsK562Yy1sc281V0416101PkRep2 K562 YY1 V101 2 broadPeak K562 YY1 281 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 493 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 YY1 281 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 YY1 V101 2\ subGroups view=Peaks factor=YY1SC281 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Yy1sc281V0416101PkRep2\ type broadPeak\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_forward 0 493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep3%20%28MM%20XXII%20-%202%29.CNhs13277.12505-133A3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12505-133A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_forward 1 493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep3%20%28MM%20XXII%20-%202%29.CNhs13277.12505-133A3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12505-133A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3\ urlLabel FANTOM5 Details:\ wgEncodeUwDnaseNhdfneoHotspotsRep2 NHDFneo Ht 2 broadPeak NHDF-neo DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 493 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel NHDFneo Ht 2\ subGroups view=Hot cellType=t3NHDFNEO rep=rep2 treatment=None\ track wgEncodeUwDnaseNhdfneoHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneNhekEzh239875Pk NHEK EZH2 broadPeak NHEK EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 493 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHEK EZH2\ subGroups view=Peaks factor=EZH239875 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekEzh239875Pk\ type broadPeak\ wgEncodeCshlLongRnaSeqHaoaf609010111CellTotalPlusRep2 HAoAF cel tot + 2 bigWig 1.000000 5730470.000000 HAoAF whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 494 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoAF whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HAoAF cel tot + 2\ subGroups view=PlusSignal cellType=t3HAOAF localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHaoaf609010111CellTotalPlusRep2\ type bigWig 1.000000 5730470.000000\ wgEncodeSydhTfbsHelas3InputStdSig HeLa Inpt Std bigWig 0.000000 9239.799805 HeLa-S3 Input Standard ChIP-seq Signal from ENCODE/SYDH 2 494 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Input Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa Inpt Std\ subGroups view=Signal factor=ZZZINPUTSTD cellType=t2HELAS3 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHelas3InputStdSig\ type bigWig 0.000000 9239.799805\ wgEncodeUwHistoneHrpeH3k4me3StdHotspotsRep1 HRPE H3K4M3 Ht 1 broadPeak HRPEpIC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 494 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRPEpIC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HRPE H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HRPEPIC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHrpeH3k4me3StdHotspotsRep1\ type broadPeak\ encTfChipPkENCFF836VRV K562 AGO1 narrowPeak Transcription Factor ChIP-seq Peaks of AGO1 in K562 from ENCODE 3 (ENCFF836VRV) 1 494 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of AGO1 in K562 from ENCODE 3 (ENCFF836VRV)\ parent encTfChipPk off\ shortLabel K562 AGO1\ subGroups cellType=K562 factor=AGO1\ track encTfChipPkENCFF836VRV\ wgEncodeHaibTfbsK562Yy1sc281V0416101RawRep2 K562 YY1 V101 2 bigWig 0.551376 986.961975 K562 YY1 281 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 494 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 YY1 281 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 YY1 V101 2\ subGroups view=RawSignal factor=YY1SC281 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Yy1sc281V0416101RawRep2\ type bigWig 0.551376 986.961975\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_ctss_rev LymphaticEndothelialCellsToVegfc_00hr15minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_reverse 0 494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep3%20%28MM%20XXII%20-%202%29.CNhs13277.12505-133A3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12505-133A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_tpm_rev LymphaticEndothelialCellsToVegfc_00hr15minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_reverse 1 494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep3%20%28MM%20XXII%20-%202%29.CNhs13277.12505-133A3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12505-133A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsUtaMcf7CtcfUniPk MCF-7 CTCF t narrowPeak MCF-7 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 494 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF-7 CTCF t\ subGroups tier=a25 cellType=a25MCF7 factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaMcf7CtcfUniPk\ wgEncodeUwDnaseNhdfneoPkRep2 NHDFneo Pk 2 narrowPeak NHDF-neo DNaseI HS Peaks Rep 2 from ENCODE/UW 1 494 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel NHDFneo Pk 2\ subGroups view=Peaks cellType=t3NHDFNEO rep=rep2 treatment=None\ track wgEncodeUwDnaseNhdfneoPkRep2\ type narrowPeak\ wgEncodeBroadHistoneNhekEzh239875Sig NHEK EZH2 bigWig 0.040000 24008.720703 NHEK EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 494 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHEK EZH2\ subGroups view=Signal factor=EZH239875 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekEzh239875Sig\ type bigWig 0.040000 24008.720703\ wgEncodeCshlLongRnaSeqHaoec70717061CellTotalAlnRep1 HAoEC cel tot A 1 bam HAoEC whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 495 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAoEC whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HAoEC cel tot A 1\ subGroups view=Alignments cellType=t3HAOEC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHaoec70717061CellTotalAlnRep1\ type bam\ wgEncodeSydhTfbsHelas3InputUcdSig HeLa Inpt UCD bigWig 0.000000 10071.400391 HeLa-S3 Input UC Davis ChIP-seq Signal from ENCODE/SYDH 2 495 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Input UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HeLa Inpt UCD\ subGroups view=Signal factor=ZZZINPUTUCD cellType=t2HELAS3 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHelas3InputUcdSig\ type bigWig 0.000000 10071.400391\ wgEncodeUwHistoneHrpeH3k4me3StdPkRep1 HRPE H3K4M3 Pk 1 narrowPeak HRPEpIC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 495 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRPEpIC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HRPE H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HRPEPIC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHrpeH3k4me3StdPkRep1\ type narrowPeak\ encTfChipPkENCFF010MMQ K562 ARHGAP35 narrowPeak Transcription Factor ChIP-seq Peaks of ARHGAP35 in K562 from ENCODE 3 (ENCFF010MMQ) 1 495 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ARHGAP35 in K562 from ENCODE 3 (ENCFF010MMQ)\ parent encTfChipPk off\ shortLabel K562 ARHGAP35\ subGroups cellType=K562 factor=ARHGAP35\ track encTfChipPkENCFF010MMQ\ wgEncodeHaibTfbsK562Zbtb33Pcr1xPkRep1 K562 ZBTB33 1 broadPeak K562 ZBTB33 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 495 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ZBTB33 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 ZBTB33 1\ subGroups view=Peaks factor=ZBTB33 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Zbtb33Pcr1xPkRep1\ type broadPeak\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_forward 0 495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%203%29.CNhs13101.12262-130A3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12262-130A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_forward 1 495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%203%29.CNhs13101.12262-130A3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12262-130A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsUtaMcf7CtcfEstroUniPk MCF-7+estrog CTCF narrowPeak MCF-7 (estrogen) TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 495 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 (estrogen) TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF-7+estrog CTCF\ subGroups tier=a25 cellType=a25MCF7 factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaMcf7CtcfEstroUniPk\ wgEncodeUwDnaseNhdfneoRawRep2 NHDFneo Sg 2 bigWig 1.000000 42501.000000 NHDF-neo DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 495 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHDF-neo DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel NHDFneo Sg 2\ subGroups view=zRSig cellType=t3NHDFNEO rep=rep2 treatment=None\ track wgEncodeUwDnaseNhdfneoRawRep2\ type bigWig 1.000000 42501.000000\ wgEncodeBroadHistoneNhekH2azPk NHEK H2A.Z broadPeak NHEK H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 495 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHEK H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH2azPk\ type broadPeak\ wgEncodeCshlLongRnaSeqHaoecCellTotalAlnRep2 HAoEC cel tot A 2 bam HAoEC whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 496 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAoEC whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HAoEC cel tot A 2\ subGroups view=Alignments cellType=t3HAOEC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHaoecCellTotalAlnRep2\ type bam\ wgEncodeSydhTfbsHepg2Arid3anb100279IggrabPk HEPG ARI3 IgR narrowPeak HEPG2 ARID3A NB100279 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 496 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 ARID3A NB100279 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG ARI3 IgR\ subGroups view=Peaks factor=ARID3ANB100279 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Arid3anb100279IggrabPk\ type narrowPeak\ wgEncodeUwHistoneHrpeH3k4me3StdRawRep1 HRPE H3K4M3 Sg 1 bigWig 1.000000 4170.000000 HRPEpIC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 496 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRPEpIC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HRPE H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HRPEPIC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHrpeH3k4me3StdRawRep1\ type bigWig 1.000000 4170.000000\ encTfChipPkENCFF225MPC K562 ARID1B narrowPeak Transcription Factor ChIP-seq Peaks of ARID1B in K562 from ENCODE 3 (ENCFF225MPC) 1 496 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ARID1B in K562 from ENCODE 3 (ENCFF225MPC)\ parent encTfChipPk off\ shortLabel K562 ARID1B\ subGroups cellType=K562 factor=ARID1B\ track encTfChipPkENCFF225MPC\ wgEncodeHaibTfbsK562Zbtb33Pcr1xRawRep1 K562 ZBTB33 1 bigWig 0.115212 149.660004 K562 ZBTB33 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 496 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ZBTB33 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 ZBTB33 1\ subGroups view=RawSignal factor=ZBTB33 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Zbtb33Pcr1xRawRep1\ type bigWig 0.115212 149.660004\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_ctss_rev LymphaticEndothelialCellsToVegfc_00hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_reverse 0 496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%203%29.CNhs13101.12262-130A3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12262-130A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_tpm_rev LymphaticEndothelialCellsToVegfc_00hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_reverse 1 496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%203%29.CNhs13101.12262-130A3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12262-130A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsUtaMcf7CtcfSerumstimUniPk MCF-7+stim CTCF narrowPeak MCF-7 (serum_stimulated) TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 496 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 (serum_stimulated) TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel MCF-7+stim CTCF\ subGroups tier=a25 cellType=a25MCF7 factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaMcf7CtcfSerumstimUniPk\ wgEncodeBroadHistoneNhekH2azSig NHEK H2A.Z bigWig 0.040000 18357.199219 NHEK H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 496 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHEK H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH2azSig\ type bigWig 0.040000 18357.199219\ wgEncodeUwDnaseNhekHotspotsRep1 NHEK Ht 1 broadPeak NHEK DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 496 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel NHEK Ht 1\ subGroups view=Hot cellType=t3NHEK rep=rep1 treatment=None\ track wgEncodeUwDnaseNhekHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHaoecCellTotalContigs HAoEC cel tot C bed 6 + HAoEC whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 497 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAoEC whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HAoEC cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3HAOEC localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqHaoecCellTotalContigs\ type bed 6 +\ wgEncodeSydhTfbsHepg2Arid3anb100279IggrabSig HEPG ARI3 IgR bigWig 1.000000 11871.000000 HEPG2 ARID3A NB100279 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 497 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 ARID3A NB100279 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG ARI3 IgR\ subGroups view=Signal factor=ARID3ANB100279 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Arid3anb100279IggrabSig\ type bigWig 1.000000 11871.000000\ wgEncodeUwHistoneHrpeH3k4me3StdHotspotsRep2 HRPE H3K4M3 Ht 2 broadPeak HRPEpIC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 497 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRPEpIC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HRPE H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HRPEPIC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHrpeH3k4me3StdHotspotsRep2\ type broadPeak\ encTfChipPkENCFF332ICQ K562 ARID2 narrowPeak Transcription Factor ChIP-seq Peaks of ARID2 in K562 from ENCODE 3 (ENCFF332ICQ) 1 497 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ARID2 in K562 from ENCODE 3 (ENCFF332ICQ)\ parent encTfChipPk off\ shortLabel K562 ARID2\ subGroups cellType=K562 factor=ARID2\ track encTfChipPkENCFF332ICQ\ wgEncodeHaibTfbsK562Zbtb33Pcr1xPkRep2 K562 ZBTB33 2 broadPeak K562 ZBTB33 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 497 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ZBTB33 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 ZBTB33 2\ subGroups view=Peaks factor=ZBTB33 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Zbtb33Pcr1xPkRep2\ type broadPeak\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_forward 0 497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%203%29.CNhs13159.12384-131E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12384-131E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_forward 1 497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%203%29.CNhs13159.12384-131E8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12384-131E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsUtaMcf7CtcfSerumstvdUniPk MCF-7+stv CTCF narrowPeak MCF-7 (serum_starved) TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 497 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 (serum_starved) TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF-7+stv CTCF\ subGroups tier=a25 cellType=a25MCF7 factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaMcf7CtcfSerumstvdUniPk\ wgEncodeBroadHistoneNhekH3k4me1StdPk NHEK H3K4m1 broadPeak NHEK H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 497 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHEK H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k4me1StdPk\ type broadPeak\ wgEncodeUwDnaseNhekPkRep1 NHEK Pk 1 narrowPeak NHEK DNaseI HS Peaks Rep 1 from ENCODE/UW 1 497 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel NHEK Pk 1\ subGroups view=Peaks cellType=t3NHEK rep=rep1 treatment=None\ track wgEncodeUwDnaseNhekPkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHaoecCellTotalJunctions HAoEC cel tot J bed 6 + HAoEC whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 498 0 0 0 127 127 127 0 0 0 expression 1 longLabel HAoEC whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HAoEC cel tot J\ subGroups view=Junctions cellType=t3HAOEC localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHaoecCellTotalJunctions\ type bed 6 +\ wgEncodeSydhTfbsHepg2Bhlhe40cIggrabPk HEPG BHL4 IgR narrowPeak HEPG2 BHLHE40 NB100 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 498 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 BHLHE40 NB100 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG BHL4 IgR\ subGroups view=Peaks factor=BHLHE40NB100 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Bhlhe40cIggrabPk\ type narrowPeak\ wgEncodeUwHistoneHrpeH3k4me3StdPkRep2 HRPE H3K4M3 Pk 2 narrowPeak HRPEpIC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 498 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRPEpIC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HRPE H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HRPEPIC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHrpeH3k4me3StdPkRep2\ type narrowPeak\ encTfChipPkENCFF835KAT K562 ARID3A narrowPeak Transcription Factor ChIP-seq Peaks of ARID3A in K562 from ENCODE 3 (ENCFF835KAT) 1 498 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ARID3A in K562 from ENCODE 3 (ENCFF835KAT)\ parent encTfChipPk off\ shortLabel K562 ARID3A\ subGroups cellType=K562 factor=ARID3A\ track encTfChipPkENCFF835KAT\ wgEncodeHaibTfbsK562Zbtb33Pcr1xRawRep2 K562 ZBTB33 2 bigWig 0.186033 227.192993 K562 ZBTB33 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 498 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ZBTB33 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 ZBTB33 2\ subGroups view=RawSignal factor=ZBTB33 cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Zbtb33Pcr1xRawRep2\ type bigWig 0.186033 227.192993\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_ctss_rev LymphaticEndothelialCellsToVegfc_00hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_reverse 0 498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%203%29.CNhs13159.12384-131E8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12384-131E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_tpm_rev LymphaticEndothelialCellsToVegfc_00hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_reverse 1 498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%203%29.CNhs13159.12384-131E8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12384-131E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsUtaMcf7CtcfVehUniPk MCF-7+vehicl CTCF narrowPeak MCF-7 (vehicle) TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 498 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 (vehicle) TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF-7+vehicl CTCF\ subGroups tier=a25 cellType=a25MCF7 factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaMcf7CtcfVehUniPk\ wgEncodeBroadHistoneNhekH3k4me1StdSig NHEK H3K4m1 bigWig 0.040000 3680.399902 NHEK H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 498 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHEK H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k4me1StdSig\ type bigWig 0.040000 3680.399902\ wgEncodeUwDnaseNhekRawRep1 NHEK Sg 1 bigWig 1.000000 20593.000000 NHEK DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 498 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel NHEK Sg 1\ subGroups view=zRSig cellType=t3NHEK rep=rep1 treatment=None\ track wgEncodeUwDnaseNhekRawRep1\ type bigWig 1.000000 20593.000000\ wgEncodeCshlLongRnaSeqHaoec70717061CellTotalMinusRep1 HAoEC cel tot - 1 bigWig 1.000000 2705488.000000 HAoEC whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 499 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoEC whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HAoEC cel tot - 1\ subGroups view=MinusSignal cellType=t3HAOEC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHaoec70717061CellTotalMinusRep1\ type bigWig 1.000000 2705488.000000\ wgEncodeSydhTfbsHepg2Bhlhe40cIggrabSig HEPG BHL4 IgR bigWig 1.000000 11747.000000 HEPG2 BHLHE40 NB100 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 499 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 BHLHE40 NB100 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG BHL4 IgR\ subGroups view=Signal factor=BHLHE40NB100 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Bhlhe40cIggrabSig\ type bigWig 1.000000 11747.000000\ wgEncodeUwHistoneHrpeH3k4me3StdRawRep2 HRPE H3K4M3 Sg 2 bigWig 1.000000 5740.000000 HRPEpIC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 499 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRPEpIC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HRPE H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HRPEPIC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHrpeH3k4me3StdRawRep2\ type bigWig 1.000000 5740.000000\ encTfChipPkENCFF944GZI K562 ARNT 1 narrowPeak Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF944GZI) 1 499 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF944GZI)\ parent encTfChipPk off\ shortLabel K562 ARNT 1\ subGroups cellType=K562 factor=ARNT\ track encTfChipPkENCFF944GZI\ wgEncodeHaibTfbsK562Zbtb7asc34508V0416101PkRep1 K562 ZBTB7A 1 broadPeak K562 ZBTB7A v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 499 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ZBTB7A v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 ZBTB7A 1\ subGroups view=Peaks factor=ZBTB7ASC34508 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Zbtb7asc34508V0416101PkRep1\ type broadPeak\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_forward 0 499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%203%29.CNhs13278.12506-133A4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12506-133A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_forward 1 499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%203%29.CNhs13278.12506-133A4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12506-133A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsUwMcf7CtcfUniPk MCF-7 CTCF w narrowPeak MCF-7 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 499 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF-7 CTCF w\ subGroups tier=a25 cellType=a25MCF7 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwMcf7CtcfUniPk\ wgEncodeBroadHistoneNhekH3k4me2StdPk NHEK H3K4m2 broadPeak NHEK H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 499 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHEK H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k4me2StdPk\ type broadPeak\ wgEncodeUwDnaseNhekHotspotsRep2 NHEK Ht 2 broadPeak NHEK DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 499 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel NHEK Ht 2\ subGroups view=Hot cellType=t3NHEK rep=rep2 treatment=None\ track wgEncodeUwDnaseNhekHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHaoecCellTotalMinusRep2 HAoEC cel tot - 2 bigWig 1.000000 8796497.000000 HAoEC whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 500 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoEC whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HAoEC cel tot - 2\ subGroups view=MinusSignal cellType=t3HAOEC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHaoecCellTotalMinusRep2\ type bigWig 1.000000 8796497.000000\ wgEncodeSydhTfbsHepg2Brca1a300IggrabPk HEPG BRC1 IgR narrowPeak HEPG2 BRCA1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 500 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 BRCA1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG BRC1 IgR\ subGroups view=Peaks factor=BRCA1A300 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Brca1a300IggrabPk\ type narrowPeak\ wgEncodeUwHistoneHrpeInputStdRawRep1 HRPE In Sg 1 bigWig 1.000000 11983.000000 HRPEpIC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 500 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HRPEpIC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HRPE In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HRPEPIC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHrpeInputStdRawRep1\ type bigWig 1.000000 11983.000000\ encTfChipPkENCFF471ZTZ K562 ARNT 2 narrowPeak Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF471ZTZ) 1 500 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF471ZTZ)\ parent encTfChipPk off\ shortLabel K562 ARNT 2\ subGroups cellType=K562 factor=ARNT\ track encTfChipPkENCFF471ZTZ\ wgEncodeHaibTfbsK562Zbtb7asc34508V0416101RawRep1 K562 ZBTB7A 1 bigWig 0.256452 123.482002 K562 ZBTB7A v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 500 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ZBTB7A v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 ZBTB7A 1\ subGroups view=RawSignal factor=ZBTB7ASC34508 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562Zbtb7asc34508V0416101RawRep1\ type bigWig 0.256452 123.482002\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_ctss_rev LymphaticEndothelialCellsToVegfc_00hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_reverse 0 500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%203%29.CNhs13278.12506-133A4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12506-133A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_tpm_rev LymphaticEndothelialCellsToVegfc_00hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_reverse 1 500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%203%29.CNhs13278.12506-133A4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12506-133A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsSydhMcf7Hae2f1UcdUniPk MCF-7 E2F1 narrowPeak MCF-7 TFBS Uniform Peaks of HA-E2F1 from ENCODE/USC/Analysis 1 500 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 TFBS Uniform Peaks of HA-E2F1 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF-7 E2F1\ subGroups tier=a25 cellType=a25MCF7 factor=E2F1 lab=USC\ track wgEncodeAwgTfbsSydhMcf7Hae2f1UcdUniPk\ wgEncodeBroadHistoneNhekH3k4me2StdSig NHEK H3K4m2 bigWig 0.040000 3108.399902 NHEK H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 500 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHEK H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k4me2StdSig\ type bigWig 0.040000 3108.399902\ wgEncodeUwDnaseNhekPkRep2 NHEK Pk 2 narrowPeak NHEK DNaseI HS Peaks Rep 2 from ENCODE/UW 1 500 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel NHEK Pk 2\ subGroups view=Peaks cellType=t3NHEK rep=rep2 treatment=None\ track wgEncodeUwDnaseNhekPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHaoec70717061CellTotalPlusRep1 HAoEC cel tot + 1 bigWig 1.000000 3504310.000000 HAoEC whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 501 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoEC whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HAoEC cel tot + 1\ subGroups view=PlusSignal cellType=t3HAOEC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHaoec70717061CellTotalPlusRep1\ type bigWig 1.000000 3504310.000000\ wgEncodeSydhTfbsHepg2Brca1a300IggrabSig HEPG BRC1 IgR bigWig 1.000000 9420.000000 HEPG2 BRCA1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 501 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 BRCA1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG BRC1 IgR\ subGroups view=Signal factor=BRCA1A300 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Brca1a300IggrabSig\ type bigWig 1.000000 9420.000000\ wgEncodeUwHistoneHvmfH3k4me3StdHotspotsRep1 HVMF H3K4M3 Ht 1 broadPeak HVMF H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 501 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HVMF H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HVMF H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3HVMF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHvmfH3k4me3StdHotspotsRep1\ type broadPeak\ encTfChipPkENCFF507MGL K562 ARNT 3 narrowPeak Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF507MGL) 1 501 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF507MGL)\ parent encTfChipPk off\ shortLabel K562 ARNT 3\ subGroups cellType=K562 factor=ARNT\ track encTfChipPkENCFF507MGL\ wgEncodeHaibTfbsK562Zbtb7asc34508V0416101PkRep2 K562 ZBTB7A 2 broadPeak K562 ZBTB7A v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 501 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel K562 ZBTB7A v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel K562 ZBTB7A 2\ subGroups view=Peaks factor=ZBTB7ASC34508 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Zbtb7asc34508V0416101PkRep2\ type broadPeak\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_forward 0 501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep1%20%28MM%20XIX%20-%204%29.CNhs13102.12263-130A4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12263-130A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_forward 1 501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep1%20%28MM%20XIX%20-%204%29.CNhs13102.12263-130A4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12263-130A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsSydhMcf7Gata3UcdUniPk MCF-7 GATA3 c narrowPeak MCF-7 TFBS Uniform Peaks of GATA3_(SC-268) from ENCODE/USC/Analysis 1 501 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 TFBS Uniform Peaks of GATA3_(SC-268) from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF-7 GATA3 c\ subGroups tier=a25 cellType=a25MCF7 factor=GATA3 lab=USC\ track wgEncodeAwgTfbsSydhMcf7Gata3UcdUniPk\ wgEncodeBroadHistoneNhekH3k4me3StdPk NHEK H3K4m3 broadPeak NHEK H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 501 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHEK H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k4me3StdPk\ type broadPeak\ wgEncodeUwDnaseNhekRawRep2 NHEK Sg 2 bigWig 1.000000 30009.000000 NHEK DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 501 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel NHEK Sg 2\ subGroups view=zRSig cellType=t3NHEK rep=rep2 treatment=None\ track wgEncodeUwDnaseNhekRawRep2\ type bigWig 1.000000 30009.000000\ wgEncodeCshlLongRnaSeqHaoecCellTotalPlusRep2 HAoEC cel tot + 2 bigWig 1.000000 4591305.000000 HAoEC whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 502 0 0 0 127 127 127 0 0 0 expression 0 longLabel HAoEC whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HAoEC cel tot + 2\ subGroups view=PlusSignal cellType=t3HAOEC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHaoecCellTotalPlusRep2\ type bigWig 1.000000 4591305.000000\ wgEncodeSydhTfbsHepg2CebpbIggrabPk HEPG CBPB IgR narrowPeak HEPG2 CEBPB IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 502 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 CEBPB IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG CBPB IgR\ subGroups view=Peaks factor=CEBPB cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2CebpbIggrabPk\ type narrowPeak\ wgEncodeUwHistoneHvmfH3k4me3StdPkRep1 HVMF H3K4M3 Pk 1 narrowPeak HVMF H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 502 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HVMF H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HVMF H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HVMF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHvmfH3k4me3StdPkRep1\ type narrowPeak\ encTfChipPkENCFF235ZZP K562 ASH1L narrowPeak Transcription Factor ChIP-seq Peaks of ASH1L in K562 from ENCODE 3 (ENCFF235ZZP) 1 502 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ASH1L in K562 from ENCODE 3 (ENCFF235ZZP)\ parent encTfChipPk off\ shortLabel K562 ASH1L\ subGroups cellType=K562 factor=ASH1L\ track encTfChipPkENCFF235ZZP\ wgEncodeHaibTfbsK562Zbtb7asc34508V0416101RawRep2 K562 ZBTB7A 2 bigWig 0.174720 48.222698 K562 ZBTB7A v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 502 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 ZBTB7A v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 ZBTB7A 2\ subGroups view=RawSignal factor=ZBTB7ASC34508 cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562Zbtb7asc34508V0416101RawRep2\ type bigWig 0.174720 48.222698\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_ctss_rev LymphaticEndothelialCellsToVegfc_00hr45minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_reverse 0 502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep1%20%28MM%20XIX%20-%204%29.CNhs13102.12263-130A4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12263-130A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_tpm_rev LymphaticEndothelialCellsToVegfc_00hr45minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_reverse 1 502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep1%20%28MM%20XIX%20-%204%29.CNhs13102.12263-130A4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12263-130A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsSydhMcf7Gata3sc269UcdUniPk MCF-7 GATA3 c2 narrowPeak MCF-7 TFBS Uniform Peaks of GATA3_(SC-269) from ENCODE/USC/Analysis 1 502 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 TFBS Uniform Peaks of GATA3_(SC-269) from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF-7 GATA3 c2\ subGroups tier=a25 cellType=a25MCF7 factor=GATA3 lab=USC\ track wgEncodeAwgTfbsSydhMcf7Gata3sc269UcdUniPk\ wgEncodeBroadHistoneNhekH3k4me3StdSig NHEK H3K4m3 bigWig 0.040000 9976.839844 NHEK H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 502 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHEK H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k4me3StdSig\ type bigWig 0.040000 9976.839844\ wgEncodeUwDnaseNhlfHotspotsRep1 NHLF Ht 1 broadPeak NHLF DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 502 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHLF DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel NHLF Ht 1\ subGroups view=Hot cellType=t3NHLF rep=rep1 treatment=None\ track wgEncodeUwDnaseNhlfHotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHch00113082pCellTotalAlnRep1 HCH cel tot A 1 bam HCH whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 503 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCH whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HCH cel tot A 1\ subGroups view=Alignments cellType=t3HCH localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHch00113082pCellTotalAlnRep1\ type bam\ wgEncodeSydhTfbsHepg2CebpbIggrabSig HEPG CBPB IgR bigWig 1.000000 19417.000000 HEPG2 CEBPB IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 503 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 CEBPB IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG CBPB IgR\ subGroups view=Signal factor=CEBPB cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2CebpbIggrabSig\ type bigWig 1.000000 19417.000000\ wgEncodeUwHistoneHvmfH3k4me3StdRawRep1 HVMF H3K4M3 Sg 1 bigWig 1.000000 4571.000000 HVMF H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 503 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HVMF H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HVMF H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HVMF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHvmfH3k4me3StdRawRep1\ type bigWig 1.000000 4571.000000\ encTfChipPkENCFF968KBN K562 ATF2 narrowPeak Transcription Factor ChIP-seq Peaks of ATF2 in K562 from ENCODE 3 (ENCFF968KBN) 1 503 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ATF2 in K562 from ENCODE 3 (ENCFF968KBN)\ parent encTfChipPk off\ shortLabel K562 ATF2\ subGroups cellType=K562 factor=ATF2\ track encTfChipPkENCFF968KBN\ wgEncodeHaibTfbsK562RxlchPcr1xRawRep1 K562 RvXL PCR1 1 bigWig 0.070242 198.557007 K562 Control PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 503 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Control PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 RvXL PCR1 1\ subGroups view=RawSignal factor=zRXLCH cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562RxlchPcr1xRawRep1\ type bigWig 0.070242 198.557007\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_forward 0 503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep2%20%28MM%20XIV%20-%204%29.CNhs13160.12385-131E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12385-131E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_forward 1 503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep2%20%28MM%20XIV%20-%204%29.CNhs13160.12385-131E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12385-131E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsUtaMcf7CmycEstroUniPk MCF-7+estrog MYC narrowPeak MCF-7 (estrogen) TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis 1 503 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 (estrogen) TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF-7+estrog MYC\ subGroups tier=a25 cellType=a25MCF7 factor=MYC lab=UT-A\ track wgEncodeAwgTfbsUtaMcf7CmycEstroUniPk\ wgEncodeBroadHistoneNhekH3k9acStdPk NHEK H3K9ac broadPeak NHEK H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 503 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHEK H3K9ac\ subGroups view=Peaks factor=H3K09AC cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k9acStdPk\ type broadPeak\ wgEncodeUwDnaseNhlfPkRep1 NHLF Pk 1 narrowPeak NHLF DNaseI HS Peaks Rep 1 from ENCODE/UW 1 503 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHLF DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel NHLF Pk 1\ subGroups view=Peaks cellType=t3NHLF rep=rep1 treatment=None\ track wgEncodeUwDnaseNhlfPkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHch81008082CellTotalAlnRep2 HCH cel tot A 2 bam HCH whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 504 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCH whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HCH cel tot A 2\ subGroups view=Alignments cellType=t3HCH localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHch81008082CellTotalAlnRep2\ type bam\ wgEncodeSydhTfbsHepg2CebpbForsklnStdPk HEPG frsk CBPB Sd narrowPeak HEPG2 CEBPB Standard forskolin ChIP-seq Peaks from ENCODE/SYDH 3 504 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 CEBPB Standard forskolin ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG frsk CBPB Sd\ subGroups view=Peaks factor=CEBPB cellType=t2HEPG2 control=STD treatment=FORSKLN\ track wgEncodeSydhTfbsHepg2CebpbForsklnStdPk\ type narrowPeak\ wgEncodeUwHistoneHvmfH3k4me3StdHotspotsRep2 HVMF H3K4M3 Ht 2 broadPeak HVMF H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 504 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HVMF H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel HVMF H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3HVMF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHvmfH3k4me3StdHotspotsRep2\ type broadPeak\ encTfChipPkENCFF958KNK K562 ATF3 1 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in K562 from ENCODE 3 (ENCFF958KNK) 1 504 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ATF3 in K562 from ENCODE 3 (ENCFF958KNK)\ parent encTfChipPk off\ shortLabel K562 ATF3 1\ subGroups cellType=K562 factor=ATF3\ track encTfChipPkENCFF958KNK\ wgEncodeHaibTfbsK562RxlchPcr1xRawRep2 K562 RvXL PCR1 2 bigWig 0.123206 238.250000 K562 Control PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 504 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Control PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 RvXL PCR1 2\ subGroups view=RawSignal factor=zRXLCH cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562RxlchPcr1xRawRep2\ type bigWig 0.123206 238.250000\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_ctss_rev LymphaticEndothelialCellsToVegfc_00hr45minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_reverse 0 504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep2%20%28MM%20XIV%20-%204%29.CNhs13160.12385-131E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12385-131E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_tpm_rev LymphaticEndothelialCellsToVegfc_00hr45minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_reverse 1 504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep2%20%28MM%20XIV%20-%204%29.CNhs13160.12385-131E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12385-131E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsUtaMcf7CmycSerumstimUniPk MCF-7+stim MYC narrowPeak MCF-7 (serum_stimulated) TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis 1 504 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 (serum_stimulated) TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel MCF-7+stim MYC\ subGroups tier=a25 cellType=a25MCF7 factor=MYC lab=UT-A\ track wgEncodeAwgTfbsUtaMcf7CmycSerumstimUniPk\ wgEncodeBroadHistoneNhekH3k9acStdSig NHEK H3K9ac bigWig 0.040000 3178.360107 NHEK H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 504 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHEK H3K9ac\ subGroups view=Signal factor=H3K09AC cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k9acStdSig\ type bigWig 0.040000 3178.360107\ wgEncodeUwDnaseNhlfRawRep1 NHLF Sg 1 bigWig 1.000000 39720.000000 NHLF DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 504 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHLF DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel NHLF Sg 1\ subGroups view=zRSig cellType=t3NHLF rep=rep1 treatment=None\ track wgEncodeUwDnaseNhlfRawRep1\ type bigWig 1.000000 39720.000000\ wgEncodeCshlLongRnaSeqHchCellTotalContigs HCH cel tot C bed 6 + HCH whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 505 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCH whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HCH cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3HCH localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqHchCellTotalContigs\ type bed 6 +\ wgEncodeSydhTfbsHepg2CebpbForsklnStdSig HEPG frsk CBPB Sd bigWig 0.000000 11672.200195 HEPG2 CEBPB Standard forskolin ChIP-seq Signal from ENCODE/SYDH 2 505 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 CEBPB Standard forskolin ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG frsk CBPB Sd\ subGroups view=Signal factor=CEBPB cellType=t2HEPG2 control=STD treatment=FORSKLN\ track wgEncodeSydhTfbsHepg2CebpbForsklnStdSig\ type bigWig 0.000000 11672.200195\ wgEncodeUwHistoneHvmfH3k4me3StdPkRep2 HVMF H3K4M3 Pk 2 narrowPeak HVMF H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 505 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HVMF H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel HVMF H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3HVMF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHvmfH3k4me3StdPkRep2\ type narrowPeak\ encTfChipPkENCFF475TQE K562 ATF3 2 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in K562 from ENCODE 3 (ENCFF475TQE) 1 505 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ATF3 in K562 from ENCODE 3 (ENCFF475TQE)\ parent encTfChipPk off\ shortLabel K562 ATF3 2\ subGroups cellType=K562 factor=ATF3\ track encTfChipPkENCFF475TQE\ wgEncodeHaibTfbsK562RxlchPcr1xRawRep3 K562 RvXL PCR1 3 bigWig 0.236072 121.872002 K562 Control PCR1x ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB 2 505 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Control PCR1x ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 RvXL PCR1 3\ subGroups view=RawSignal factor=zRXLCH cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep3\ track wgEncodeHaibTfbsK562RxlchPcr1xRawRep3\ type bigWig 0.236072 121.872002\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_forward 0 505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep3%20%28MM%20XXII%20-%204%29.CNhs13279.12507-133A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12507-133A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_forward 1 505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep3%20%28MM%20XXII%20-%204%29.CNhs13279.12507-133A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12507-133A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsUtaMcf7CmycSerumstvdUniPk MCF-7+strv MYC narrowPeak MCF-7 (serum_starved) TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis 1 505 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 (serum_starved) TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF-7+strv MYC\ subGroups tier=a25 cellType=a25MCF7 factor=MYC lab=UT-A\ track wgEncodeAwgTfbsUtaMcf7CmycSerumstvdUniPk\ wgEncodeBroadHistoneNhekH3k09me3Pk NHEK H3K9m3 broadPeak NHEK H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 505 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHEK H3K9m3\ subGroups view=Peaks factor=H3K09ME3 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k09me3Pk\ type broadPeak\ wgEncodeUwDnaseNhlfHotspotsRep2 NHLF Ht 2 broadPeak NHLF DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 505 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHLF DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel NHLF Ht 2\ subGroups view=Hot cellType=t3NHLF rep=rep2 treatment=None\ track wgEncodeUwDnaseNhlfHotspotsRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHchCellTotalJunctions HCH cel tot J bed 6 + HCH whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 506 0 0 0 127 127 127 0 0 0 expression 1 longLabel HCH whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HCH cel tot J\ subGroups view=Junctions cellType=t3HCH localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHchCellTotalJunctions\ type bed 6 +\ wgEncodeSydhTfbsHepg2CebpzIggrabPk HEPG CEBPZ IgR narrowPeak HEPG2 CEBPZ IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 506 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 CEBPZ IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG CEBPZ IgR\ subGroups view=Peaks factor=CEBPZ cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2CebpzIggrabPk\ type narrowPeak\ wgEncodeUwHistoneHvmfH3k4me3StdRawRep2 HVMF H3K4M3 Sg 2 bigWig 1.000000 6381.000000 HVMF H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 506 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HVMF H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HVMF H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3HVMF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneHvmfH3k4me3StdRawRep2\ type bigWig 1.000000 6381.000000\ encTfChipPkENCFF710IEF K562 ATF4 narrowPeak Transcription Factor ChIP-seq Peaks of ATF4 in K562 from ENCODE 3 (ENCFF710IEF) 1 506 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ATF4 in K562 from ENCODE 3 (ENCFF710IEF)\ parent encTfChipPk off\ shortLabel K562 ATF4\ subGroups cellType=K562 factor=ATF4\ track encTfChipPkENCFF710IEF\ wgEncodeHaibTfbsK562RxlchPcr1xRawRep4 K562 RvXL PCR1 4 bigWig 0.413974 163.623001 K562 Control PCR1x ChIP-seq Raw Signal Rep 4 from ENCODE/HAIB 2 506 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Control PCR1x ChIP-seq Raw Signal Rep 4 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 RvXL PCR1 4\ subGroups view=RawSignal factor=zRXLCH cellType=t1K562 protocol=PCR1X treatment=NONE rep=rep4\ track wgEncodeHaibTfbsK562RxlchPcr1xRawRep4\ type bigWig 0.413974 163.623001\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_ctss_rev LymphaticEndothelialCellsToVegfc_00hr45minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_reverse 0 506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep3%20%28MM%20XXII%20-%204%29.CNhs13279.12507-133A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12507-133A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_tpm_rev LymphaticEndothelialCellsToVegfc_00hr45minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_reverse 1 506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep3%20%28MM%20XXII%20-%204%29.CNhs13279.12507-133A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12507-133A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsUtaMcf7CmycVehUniPk MCF-7+vehicle MYC narrowPeak MCF-7 (vehicle) TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis 1 506 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 (vehicle) TFBS Uniform Peaks of c-Myc from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF-7+vehicle MYC\ subGroups tier=a25 cellType=a25MCF7 factor=MYC lab=UT-A\ track wgEncodeAwgTfbsUtaMcf7CmycVehUniPk\ wgEncodeBroadHistoneNhekH3k09me3Sig NHEK H3K9m3 bigWig 0.040000 97813.898438 NHEK H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 506 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHEK H3K9m3\ subGroups view=Signal factor=H3K09ME3 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k09me3Sig\ type bigWig 0.040000 97813.898438\ wgEncodeUwDnaseNhlfPkRep2 NHLF Pk 2 narrowPeak NHLF DNaseI HS Peaks Rep 2 from ENCODE/UW 1 506 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHLF DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel NHLF Pk 2\ subGroups view=Peaks cellType=t3NHLF rep=rep2 treatment=None\ track wgEncodeUwDnaseNhlfPkRep2\ type narrowPeak\ wgEncodeCshlLongRnaSeqHch00113082pCellTotalMinusRep1 HCH cel tot - 1 bigWig 1.000000 2863952.000000 HCH whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 507 0 0 0 127 127 127 0 0 0 expression 0 longLabel HCH whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HCH cel tot - 1\ subGroups view=MinusSignal cellType=t3HCH localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHch00113082pCellTotalMinusRep1\ type bigWig 1.000000 2863952.000000\ wgEncodeSydhTfbsHepg2CebpzIggrabSig HEPG CEBPZ IgR bigWig 1.000000 15365.000000 HEPG2 CEBPZ IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 507 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 CEBPZ IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG CEBPZ IgR\ subGroups view=Signal factor=CEBPZ cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2CebpzIggrabSig\ type bigWig 1.000000 15365.000000\ wgEncodeUwHistoneHvmfInputStdRawRep1 HVMF In Sg 1 bigWig 1.000000 21799.000000 HVMF Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 507 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HVMF Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel HVMF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3HVMF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneHvmfInputStdRawRep1\ type bigWig 1.000000 21799.000000\ encTfChipPkENCFF868QLL K562 ATF7 narrowPeak Transcription Factor ChIP-seq Peaks of ATF7 in K562 from ENCODE 3 (ENCFF868QLL) 1 507 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ATF7 in K562 from ENCODE 3 (ENCFF868QLL)\ parent encTfChipPk off\ shortLabel K562 ATF7\ subGroups cellType=K562 factor=ATF7\ track encTfChipPkENCFF868QLL\ wgEncodeHaibTfbsK562RxlchV0416101RawRep1 K562 RvXL V101 1 bigWig 0.336271 118.956001 K562 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 507 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 RvXL V101 1\ subGroups view=RawSignal factor=zRXLCH cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562RxlchV0416101RawRep1\ type bigWig 0.336271 118.956001\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_forward 0 507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%205%29.CNhs13103.12264-130A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12264-130A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_forward 1 507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%205%29.CNhs13103.12264-130A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12264-130A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsUtaMcf7Pol2UniPk MCF-7 POLR2A narrowPeak MCF-7 TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis 1 507 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF-7 POLR2A\ subGroups tier=a25 cellType=a25MCF7 factor=POLR2A lab=UT-A\ track wgEncodeAwgTfbsUtaMcf7Pol2UniPk\ wgEncodeBroadHistoneNhekH3k9me1StdPk NHEK H3K9m1 broadPeak NHEK H3K9me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 507 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K9me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHEK H3K9m1\ subGroups view=Peaks factor=H3K09me1 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k9me1StdPk\ type broadPeak\ wgEncodeUwDnaseNhlfRawRep2 NHLF Sg 2 bigWig 1.000000 18936.000000 NHLF DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 507 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHLF DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel NHLF Sg 2\ subGroups view=zRSig cellType=t3NHLF rep=rep2 treatment=None\ track wgEncodeUwDnaseNhlfRawRep2\ type bigWig 1.000000 18936.000000\ wgEncodeCshlLongRnaSeqHch81008082CellTotalMinusRep2 HCH cel tot - 2 bigWig 1.000000 6570549.000000 HCH whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 508 0 0 0 127 127 127 0 0 0 expression 0 longLabel HCH whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HCH cel tot - 2\ subGroups view=MinusSignal cellType=t3HCH localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHch81008082CellTotalMinusRep2\ type bigWig 1.000000 6570549.000000\ wgEncodeSydhTfbsHepg2Chd2ab68301IggrabPk HEPG CHD2 IgR narrowPeak HEPG2 CHD2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 508 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 CHD2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG CHD2 IgR\ subGroups view=Peaks factor=CHD2 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Chd2ab68301IggrabPk\ type narrowPeak\ wgEncodeUwHistoneJurkatH3k4me3StdHotspotsRep1 Jurk H3K4M3 Ht 1 broadPeak Jurkat H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 508 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Jurkat H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel Jurk H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3JURKAT rep=rep1 treatment=zNone\ track wgEncodeUwHistoneJurkatH3k4me3StdHotspotsRep1\ type broadPeak\ encTfChipPkENCFF423EMU K562 BACH1 narrowPeak Transcription Factor ChIP-seq Peaks of BACH1 in K562 from ENCODE 3 (ENCFF423EMU) 1 508 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of BACH1 in K562 from ENCODE 3 (ENCFF423EMU)\ parent encTfChipPk off\ shortLabel K562 BACH1\ subGroups cellType=K562 factor=BACH1\ track encTfChipPkENCFF423EMU\ wgEncodeHaibTfbsK562RxlchV0416101RawRep2 K562 RvXL V101 2 bigWig 0.231074 148.464996 K562 Control v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 508 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Control v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 RvXL V101 2\ subGroups view=RawSignal factor=zRXLCH cellType=t1K562 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562RxlchV0416101RawRep2\ type bigWig 0.231074 148.464996\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_ctss_rev LymphaticEndothelialCellsToVegfc_01hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_reverse 0 508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%205%29.CNhs13103.12264-130A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12264-130A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_tpm_rev LymphaticEndothelialCellsToVegfc_01hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_reverse 1 508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%205%29.CNhs13103.12264-130A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12264-130A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsUtaMcf7Pol2SerumstimUniPk MCF-7+stim POLR2A narrowPeak MCF-7 (serum_stimulated) TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis 1 508 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 (serum_stimulated) TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform on\ shortLabel MCF-7+stim POLR2A\ subGroups tier=a25 cellType=a25MCF7 factor=POLR2A lab=UT-A\ track wgEncodeAwgTfbsUtaMcf7Pol2SerumstimUniPk\ wgEncodeBroadHistoneNhekH3k9me1StdSig NHEK H3K9m1 bigWig 0.040000 5266.720215 NHEK H3K9me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 508 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK H3K9me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHEK H3K9m1\ subGroups view=Signal factor=H3K09me1 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k9me1StdSig\ type bigWig 0.040000 5266.720215\ wgEncodeUwDnaseNt2d1HotspotsRep1 NT2D1 Ht 1 broadPeak NT2-D1 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 508 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2-D1 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel NT2D1 Ht 1\ subGroups view=Hot cellType=t3NT2D1 rep=rep1 treatment=None\ track wgEncodeUwDnaseNt2d1HotspotsRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHch00113082pCellTotalPlusRep1 HCH cel tot + 1 bigWig 1.000000 3708924.000000 HCH whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 509 0 0 0 127 127 127 0 0 0 expression 0 longLabel HCH whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HCH cel tot + 1\ subGroups view=PlusSignal cellType=t3HCH localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHch00113082pCellTotalPlusRep1\ type bigWig 1.000000 3708924.000000\ wgEncodeSydhTfbsHepg2Chd2ab68301IggrabSig HEPG CHD2 IgR bigWig 1.000000 19697.000000 HEPG2 CHD2 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 509 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 CHD2 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG CHD2 IgR\ subGroups view=Signal factor=CHD2 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Chd2ab68301IggrabSig\ type bigWig 1.000000 19697.000000\ wgEncodeUwHistoneJurkatH3k4me3StdPkRep1 Jurk H3K4M3 Pk 1 narrowPeak Jurkat H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 509 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Jurkat H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel Jurk H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3JURKAT rep=rep1 treatment=zNone\ track wgEncodeUwHistoneJurkatH3k4me3StdPkRep1\ type narrowPeak\ encTfChipPkENCFF057ZUY K562 BCOR narrowPeak Transcription Factor ChIP-seq Peaks of BCOR in K562 from ENCODE 3 (ENCFF057ZUY) 1 509 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of BCOR in K562 from ENCODE 3 (ENCFF057ZUY)\ parent encTfChipPk off\ shortLabel K562 BCOR\ subGroups cellType=K562 factor=BCOR\ track encTfChipPkENCFF057ZUY\ wgEncodeHaibTfbsK562RxlchV0422111RawRep1 K562 RvXL V11 1 bigWig 0.106519 131.205002 K562 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 509 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 RvXL V11 1\ subGroups view=RawSignal factor=zRXLCH cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsK562RxlchV0422111RawRep1\ type bigWig 0.106519 131.205002\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_forward 0 509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%205%29.CNhs13161.12386-131F1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12386-131F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_forward 1 509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%205%29.CNhs13161.12386-131F1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12386-131F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsUtaMcf7Pol2SerumstvdUniPk MCF-7+strv POLR2A narrowPeak MCF-7 (serum_starved) TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis 1 509 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 (serum_starved) TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF-7+strv POLR2A\ subGroups tier=a25 cellType=a25MCF7 factor=POLR2A lab=UT-A\ track wgEncodeAwgTfbsUtaMcf7Pol2SerumstvdUniPk\ wgEncodeBroadHistoneNhekH3k27acStdPk NHEK H3K27ac broadPeak NHEK H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 509 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHEK H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k27acStdPk\ type broadPeak\ wgEncodeUwDnaseNt2d1PkRep1 NT2D1 Pk 1 narrowPeak NT2-D1 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 509 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2-D1 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel NT2D1 Pk 1\ subGroups view=Peaks cellType=t3NT2D1 rep=rep1 treatment=None\ track wgEncodeUwDnaseNt2d1PkRep1\ type narrowPeak\ wgEncodeCshlLongRnaSeqHch81008082CellTotalPlusRep2 HCH cel tot + 2 bigWig 1.000000 4260191.000000 HCH whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 510 0 0 0 127 127 127 0 0 0 expression 0 longLabel HCH whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HCH cel tot + 2\ subGroups view=PlusSignal cellType=t3HCH localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHch81008082CellTotalPlusRep2\ type bigWig 1.000000 4260191.000000\ wgEncodeSydhTfbsHepg2CjunIggrabPk HEPG cJun IgR narrowPeak HEPG2 c-Jun IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 510 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 c-Jun IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG cJun IgR\ subGroups view=Peaks factor=CJUN cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2CjunIggrabPk\ type narrowPeak\ wgEncodeUwHistoneJurkatH3k4me3StdRawRep1 Jurk H3K4M3 Sg 1 bigWig 1.000000 7505.000000 Jurkat H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 510 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Jurkat H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel Jurk H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3JURKAT rep=rep1 treatment=zNone\ track wgEncodeUwHistoneJurkatH3k4me3StdRawRep1\ type bigWig 1.000000 7505.000000\ encTfChipPkENCFF179NDS K562 BHLHE40 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in K562 from ENCODE 3 (ENCFF179NDS) 1 510 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in K562 from ENCODE 3 (ENCFF179NDS)\ parent encTfChipPk off\ shortLabel K562 BHLHE40\ subGroups cellType=K562 factor=BHLHE40\ track encTfChipPkENCFF179NDS\ wgEncodeHaibTfbsK562RxlchV0422111RawRep2 K562 RvXL V11 2 bigWig 0.097815 216.807007 K562 Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 510 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 RvXL V11 2\ subGroups view=RawSignal factor=zRXLCH cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsK562RxlchV0422111RawRep2\ type bigWig 0.097815 216.807007\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_ctss_rev LymphaticEndothelialCellsToVegfc_01hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_reverse 0 510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%205%29.CNhs13161.12386-131F1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12386-131F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_tpm_rev LymphaticEndothelialCellsToVegfc_01hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_reverse 1 510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%205%29.CNhs13161.12386-131F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12386-131F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsSydhMcf7Tcf7l2UcdUniPk MCF-7 TCF7L2 narrowPeak MCF-7 TFBS Uniform Peaks of TCF7L2 from ENCODE/USC/Analysis 1 510 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 TFBS Uniform Peaks of TCF7L2 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF-7 TCF7L2\ subGroups tier=a25 cellType=a25MCF7 factor=TCF7L2 lab=USC\ track wgEncodeAwgTfbsSydhMcf7Tcf7l2UcdUniPk\ wgEncodeBroadHistoneNhekH3k27acStdSig NHEK H3K27ac bigWig 0.040000 36868.121094 NHEK H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 510 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHEK H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k27acStdSig\ type bigWig 0.040000 36868.121094\ wgEncodeUwDnaseNt2d1RawRep1 NT2D1 Sg 1 bigWig 1.000000 20649.000000 NT2-D1 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 510 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NT2-D1 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel NT2D1 Sg 1\ subGroups view=zRSig cellType=t3NT2D1 rep=rep1 treatment=None\ track wgEncodeUwDnaseNt2d1RawRep1\ type bigWig 1.000000 20649.000000\ wgEncodeSydhTfbsHepg2CjunIggrabSig HEPG cJun IgR bigWig 0.000000 31413.500000 HEPG2 c-Jun IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 511 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 c-Jun IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG cJun IgR\ subGroups view=Signal factor=CJUN cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2CjunIggrabSig\ type bigWig 0.000000 31413.500000\ wgEncodeCshlLongRnaSeqHfdpc01027033CellTotalAlnRep1 HFDPC cel tot A 1 bam HFDPC whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 511 0 0 0 127 127 127 0 0 0 expression 1 longLabel HFDPC whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HFDPC cel tot A 1\ subGroups view=Alignments cellType=t3HFDPC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHfdpc01027033CellTotalAlnRep1\ type bam\ wgEncodeUwHistoneJurkatH3k4me3StdHotspotsRep2 Jurk H3K4M3 Ht 2 broadPeak Jurkat H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 511 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Jurkat H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel Jurk H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3JURKAT rep=rep2 treatment=zNone\ track wgEncodeUwHistoneJurkatH3k4me3StdHotspotsRep2\ type broadPeak\ encTfChipPkENCFF048OIZ K562 BMI1 narrowPeak Transcription Factor ChIP-seq Peaks of BMI1 in K562 from ENCODE 3 (ENCFF048OIZ) 1 511 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of BMI1 in K562 from ENCODE 3 (ENCFF048OIZ)\ parent encTfChipPk off\ shortLabel K562 BMI1\ subGroups cellType=K562 factor=BMI1\ track encTfChipPkENCFF048OIZ\ wgEncodeHaibTfbsK562RxlchV0422111RawRep3 K562 RvXL V11 3 bigWig 1.000000 2251.000000 K562 Control v042211.1 ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB 2 511 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Control v042211.1 ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 RvXL V11 3\ subGroups view=RawSignal factor=zRXLCH cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep3\ track wgEncodeHaibTfbsK562RxlchV0422111RawRep3\ type bigWig 1.000000 2251.000000\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_forward 0 511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%205%29.CNhs13280.12508-133A6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12508-133A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_forward 1 511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%205%29.CNhs13280.12508-133A6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12508-133A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsSydhMcf7Znf217UcdUniPk MCF-7 ZNF217 narrowPeak MCF-7 TFBS Uniform Peaks of ZNF217 from ENCODE/USC/Analysis 1 511 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 TFBS Uniform Peaks of ZNF217 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF-7 ZNF217\ subGroups tier=a25 cellType=a25MCF7 factor=ZNF217 lab=USC\ track wgEncodeAwgTfbsSydhMcf7Znf217UcdUniPk\ wgEncodeBroadHistoneNhekH3k27me3StdPk NHEK H3K27m3 broadPeak NHEK H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 511 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHEK H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k27me3StdPk\ type broadPeak\ wgEncodeUwDnaseNt2d1HotspotsRep2 NT2D1 Ht 2 broadPeak NT2-D1 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 511 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2-D1 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel NT2D1 Ht 2\ subGroups view=Hot cellType=t3NT2D1 rep=rep2 treatment=None\ track wgEncodeUwDnaseNt2d1HotspotsRep2\ type broadPeak\ wgEncodeSydhTfbsHepg2Corestsc30189IggrabPk HEPG COREST IgR narrowPeak HEPG2 COREST SC30189 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 512 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 COREST SC30189 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG COREST IgR\ subGroups view=Peaks factor=CORESTSC30189 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Corestsc30189IggrabPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHfdpc01005032CellTotalAlnRep2 HFDPC cel tot A 2 bam HFDPC whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 512 0 0 0 127 127 127 0 0 0 expression 1 longLabel HFDPC whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HFDPC cel tot A 2\ subGroups view=Alignments cellType=t3HFDPC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHfdpc01005032CellTotalAlnRep2\ type bam\ wgEncodeUwHistoneJurkatH3k4me3StdPkRep2 Jurk H3K4M3 Pk 2 narrowPeak Jurkat H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 512 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Jurkat H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel Jurk H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3JURKAT rep=rep2 treatment=zNone\ track wgEncodeUwHistoneJurkatH3k4me3StdPkRep2\ type narrowPeak\ encTfChipPkENCFF549GMO K562 BRCA1 narrowPeak Transcription Factor ChIP-seq Peaks of BRCA1 in K562 from ENCODE 3 (ENCFF549GMO) 1 512 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of BRCA1 in K562 from ENCODE 3 (ENCFF549GMO)\ parent encTfChipPk off\ shortLabel K562 BRCA1\ subGroups cellType=K562 factor=BRCA1\ track encTfChipPkENCFF549GMO\ wgEncodeHaibTfbsK562RxlchV0422111RawRep4 K562 RvXL V11 4 bigWig 1.000000 6086.000000 K562 Control v042211.1 ChIP-seq Raw Signal Rep 4 from ENCODE/HAIB 2 512 46 0 184 150 127 219 0 0 0 regulation 0 color 46,0,184\ longLabel K562 Control v042211.1 ChIP-seq Raw Signal Rep 4 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel K562 RvXL V11 4\ subGroups view=RawSignal factor=zRXLCH cellType=t1K562 protocol=V0422111 treatment=NONE rep=rep4\ track wgEncodeHaibTfbsK562RxlchV0422111RawRep4\ type bigWig 1.000000 6086.000000\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_ctss_rev LymphaticEndothelialCellsToVegfc_01hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_reverse 0 512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%205%29.CNhs13280.12508-133A6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12508-133A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_tpm_rev LymphaticEndothelialCellsToVegfc_01hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_reverse 1 512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%205%29.CNhs13280.12508-133A6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12508-133A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneNhekH3k27me3StdSig NHEK H3K27m3 bigWig 0.040000 3975.879883 NHEK H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 512 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHEK H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k27me3StdSig\ type bigWig 0.040000 3975.879883\ wgEncodeUwDnaseNt2d1PkRep2 NT2D1 Pk 2 narrowPeak NT2-D1 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 512 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2-D1 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel NT2D1 Pk 2\ subGroups view=Peaks cellType=t3NT2D1 rep=rep2 treatment=None\ track wgEncodeUwDnaseNt2d1PkRep2\ type narrowPeak\ wgEncodeAwgTfbsHaibSknshPol24h8V0416101UniPk SK-N-SH POLR2A narrowPeak SK-N-SH TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis 1 512 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel SK-N-SH POLR2A\ subGroups tier=a25 cellType=a25SKNSH factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibSknshPol24h8V0416101UniPk\ wgEncodeHaibTfbsA549Atf3V0422111Etoh02PkRep1 A549 ATF3 EtOH 1 broadPeak A549 ATF3 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 513 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 ATF3 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 ATF3 EtOH 1\ subGroups view=Peaks factor=ATF3 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Atf3V0422111Etoh02PkRep1\ type broadPeak\ wgEncodeSydhTfbsHepg2Corestsc30189IggrabSig HEPG COREST IgR bigWig 1.000000 15253.000000 HEPG2 COREST SC30189 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 513 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 COREST SC30189 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG COREST IgR\ subGroups view=Signal factor=CORESTSC30189 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Corestsc30189IggrabSig\ type bigWig 1.000000 15253.000000\ wgEncodeCshlLongRnaSeqHfdpcCellTotalContigs HFDPC cel tot C bed 6 + HFDPC whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 513 0 0 0 127 127 127 0 0 0 expression 1 longLabel HFDPC whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HFDPC cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3HFDPC localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqHfdpcCellTotalContigs\ type bed 6 +\ wgEncodeUwHistoneJurkatH3k4me3StdRawRep2 Jurk H3K4M3 Sg 2 bigWig 1.000000 6095.000000 Jurkat H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 513 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Jurkat H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel Jurk H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3JURKAT rep=rep2 treatment=zNone\ track wgEncodeUwHistoneJurkatH3k4me3StdRawRep2\ type bigWig 1.000000 6095.000000\ encTfChipPkENCFF714XHL K562 BRD4 narrowPeak Transcription Factor ChIP-seq Peaks of BRD4 in K562 from ENCODE 3 (ENCFF714XHL) 1 513 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of BRD4 in K562 from ENCODE 3 (ENCFF714XHL)\ parent encTfChipPk off\ shortLabel K562 BRD4\ subGroups cellType=K562 factor=BRD4\ track encTfChipPkENCFF714XHL\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_forward 0 513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep1%20%28MM%20XIX%20-%206%29.CNhs13104.12265-130A6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12265-130A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_forward 1 513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep1%20%28MM%20XIX%20-%206%29.CNhs13104.12265-130A6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12265-130A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneNhekH3k36me3StdPk NHEK H3K36m3 broadPeak NHEK H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 513 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHEK H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k36me3StdPk\ type broadPeak\ wgEncodeUwDnaseNt2d1RawRep2 NT2D1 Sg 2 bigWig 1.000000 16081.000000 NT2-D1 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 513 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NT2-D1 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel NT2D1 Sg 2\ subGroups view=zRSig cellType=t3NT2D1 rep=rep2 treatment=None\ track wgEncodeUwDnaseNt2d1RawRep2\ type bigWig 1.000000 16081.000000\ wgEncodeAwgTfbsHaibSknshNrsfPcr2xUniPk SK-N-SH REST h narrowPeak SK-N-SH TFBS Uniform Peaks of NRSF (Ptcl:Pcr2x) from ENCODE/HudsonAlpha/Analysis 1 513 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH TFBS Uniform Peaks of NRSF (Ptcl:Pcr2x) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel SK-N-SH REST h\ subGroups tier=a25 cellType=a25SKNSH factor=REST lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibSknshNrsfPcr2xUniPk\ wgEncodeHaibTfbsA549Atf3V0422111Etoh02RawRep1 A549 ATF3 EtOH 1 bigWig 0.160691 240.393997 A549 ATF3 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 514 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 ATF3 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 ATF3 EtOH 1\ subGroups view=RawSignal factor=ATF3 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Atf3V0422111Etoh02RawRep1\ type bigWig 0.160691 240.393997\ wgEncodeSydhTfbsHepg2ErraForsklnStdPk HEPG frsk ERRA Sd narrowPeak HEPG2 ERRA Standard forskolin ChIP-seq Peaks from ENCODE/SYDH 3 514 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 ERRA Standard forskolin ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG frsk ERRA Sd\ subGroups view=Peaks factor=ERRA cellType=t2HEPG2 control=STD treatment=FORSKLN\ track wgEncodeSydhTfbsHepg2ErraForsklnStdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHfdpcCellTotalJunctions HFDPC cel tot J bed 6 + HFDPC whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 514 0 0 0 127 127 127 0 0 0 expression 1 longLabel HFDPC whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HFDPC cel tot J\ subGroups view=Junctions cellType=t3HFDPC localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHfdpcCellTotalJunctions\ type bed 6 +\ wgEncodeUwHistoneJurkatInputStdRawRep1 Jurk In Sg 1 bigWig 1.000000 18193.000000 Jurkat Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 514 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Jurkat Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel Jurk In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3JURKAT rep=rep1 treatment=zNone\ track wgEncodeUwHistoneJurkatInputStdRawRep1\ type bigWig 1.000000 18193.000000\ encTfChipPkENCFF666LZV K562 BRD9 narrowPeak Transcription Factor ChIP-seq Peaks of BRD9 in K562 from ENCODE 3 (ENCFF666LZV) 1 514 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of BRD9 in K562 from ENCODE 3 (ENCFF666LZV)\ parent encTfChipPk off\ shortLabel K562 BRD9\ subGroups cellType=K562 factor=BRD9\ track encTfChipPkENCFF666LZV\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_ctss_rev LymphaticEndothelialCellsToVegfc_01hr20minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_reverse 0 514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep1%20%28MM%20XIX%20-%206%29.CNhs13104.12265-130A6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12265-130A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_tpm_rev LymphaticEndothelialCellsToVegfc_01hr20minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_reverse 1 514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep1%20%28MM%20XIX%20-%206%29.CNhs13104.12265-130A6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12265-130A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneNhekH3k36me3StdSig NHEK H3K36m3 bigWig 0.040000 4187.120117 NHEK H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 514 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHEK H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k36me3StdSig\ type bigWig 0.040000 4187.120117\ wgEncodeUwDnasePanc1HotspotsRep1 PANC1 Ht 1 broadPeak PANC-1 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 514 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel PANC1 Ht 1\ subGroups view=Hot cellType=t3PANC1 rep=rep1 treatment=None\ track wgEncodeUwDnasePanc1HotspotsRep1\ type broadPeak\ wgEncodeAwgTfbsHaibSknshNrsfV0416101UniPk SK-N-SH REST h2 narrowPeak SK-N-SH TFBS Uniform Peaks of NRSF (P:V0416101) from ENCODE/HudsonAlpha/Analysis 1 514 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH TFBS Uniform Peaks of NRSF (P:V0416101) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel SK-N-SH REST h2\ subGroups tier=a25 cellType=a25SKNSH factor=REST lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibSknshNrsfV0416101UniPk\ wgEncodeHaibTfbsA549Atf3V0422111Etoh02PkRep2 A549 ATF3 EtOH 2 broadPeak A549 ATF3 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 515 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 ATF3 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 ATF3 EtOH 2\ subGroups view=Peaks factor=ATF3 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Atf3V0422111Etoh02PkRep2\ type broadPeak\ wgEncodeSydhTfbsHepg2ErraForsklnStdSig HEPG frsk ERRA Sd bigWig 0.000000 6330.500000 HEPG2 ERRA Standard forskolin ChIP-seq Signal from ENCODE/SYDH 2 515 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 ERRA Standard forskolin ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG frsk ERRA Sd\ subGroups view=Signal factor=ERRA cellType=t2HEPG2 control=STD treatment=FORSKLN\ track wgEncodeSydhTfbsHepg2ErraForsklnStdSig\ type bigWig 0.000000 6330.500000\ wgEncodeCshlLongRnaSeqHfdpc01027033CellTotalMinusRep1 HFDPC cel tot - 1 bigWig 1.000000 2109292.000000 HFDPC whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 515 0 0 0 127 127 127 0 0 0 expression 0 longLabel HFDPC whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HFDPC cel tot - 1\ subGroups view=MinusSignal cellType=t3HFDPC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHfdpc01027033CellTotalMinusRep1\ type bigWig 1.000000 2109292.000000\ encTfChipPkENCFF996ZGL K562 C11orf30 narrowPeak Transcription Factor ChIP-seq Peaks of C11orf30 in K562 from ENCODE 3 (ENCFF996ZGL) 1 515 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of C11orf30 in K562 from ENCODE 3 (ENCFF996ZGL)\ parent encTfChipPk off\ shortLabel K562 C11orf30\ subGroups cellType=K562 factor=C11orf30\ track encTfChipPkENCFF996ZGL\ wgEncodeUwHistoneLncapH3k04me3StdHotspotsRep1 LNCP H3K4M3 Ht 1 broadPeak LNCaP H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 515 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel LNCaP H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel LNCP H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3LNCAP rep=rep1 treatment=zNone\ track wgEncodeUwHistoneLncapH3k04me3StdHotspotsRep1\ type broadPeak\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_forward 0 515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep2%20%28MM%20XIV%20-%206%29.CNhs13162.12387-131F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12387-131F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_forward 1 515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep2%20%28MM%20XIV%20-%206%29.CNhs13162.12387-131F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12387-131F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneNhekH3k79me2Pk NHEK H3K79m2 broadPeak NHEK H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 515 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHEK H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k79me2Pk\ type broadPeak\ wgEncodeUwDnasePanc1PkRep1 PANC1 Pk 1 narrowPeak PANC-1 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 515 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel PANC1 Pk 1\ subGroups view=Peaks cellType=t3PANC1 rep=rep1 treatment=None\ track wgEncodeUwDnasePanc1PkRep1\ type narrowPeak\ wgEncodeAwgTfbsHaibSknshSin3ak20V0416101UniPk SK-N-SH SIN3AK20 narrowPeak SK-N-SH TFBS Uniform Peaks of Sin3Ak-20 from ENCODE/HudsonAlpha/Analysis 1 515 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH TFBS Uniform Peaks of Sin3Ak-20 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel SK-N-SH SIN3AK20\ subGroups tier=a25 cellType=a25SKNSH factor=SIN3AK20 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibSknshSin3ak20V0416101UniPk\ wgEncodeHaibTfbsA549Atf3V0422111Etoh02RawRep2 A549 ATF3 EtOH 2 bigWig 0.127575 185.557999 A549 ATF3 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 516 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 ATF3 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 ATF3 EtOH 2\ subGroups view=RawSignal factor=ATF3 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Atf3V0422111Etoh02RawRep2\ type bigWig 0.127575 185.557999\ wgEncodeSydhTfbsHepg2Grp20ForsklnStdPk HEPG frsk GR20 Sd narrowPeak HEPG2 GRp20 Standard forskolin ChIP-seq Peaks from ENCODE/SYDH 3 516 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 GRp20 Standard forskolin ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG frsk GR20 Sd\ subGroups view=Peaks factor=GRP20 cellType=t2HEPG2 control=STD treatment=FORSKLN\ track wgEncodeSydhTfbsHepg2Grp20ForsklnStdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHfdpc01005032CellTotalMinusRep2 HFDPC cel tot - 2 bigWig 1.000000 6250110.000000 HFDPC whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 516 0 0 0 127 127 127 0 0 0 expression 0 longLabel HFDPC whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HFDPC cel tot - 2\ subGroups view=MinusSignal cellType=t3HFDPC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHfdpc01005032CellTotalMinusRep2\ type bigWig 1.000000 6250110.000000\ encTfChipPkENCFF642BNC K562 CBFA2T2 narrowPeak Transcription Factor ChIP-seq Peaks of CBFA2T2 in K562 from ENCODE 3 (ENCFF642BNC) 1 516 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CBFA2T2 in K562 from ENCODE 3 (ENCFF642BNC)\ parent encTfChipPk off\ shortLabel K562 CBFA2T2\ subGroups cellType=K562 factor=CBFA2T2\ track encTfChipPkENCFF642BNC\ wgEncodeUwHistoneLncapH3k04me3StdPkRep1 LNCP H3K4M3 Pk 1 narrowPeak LNCaP H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 516 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel LNCaP H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel LNCP H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3LNCAP rep=rep1 treatment=zNone\ track wgEncodeUwHistoneLncapH3k04me3StdPkRep1\ type narrowPeak\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_ctss_rev LymphaticEndothelialCellsToVegfc_01hr20minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_reverse 0 516 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep2%20%28MM%20XIV%20-%206%29.CNhs13162.12387-131F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12387-131F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_tpm_rev LymphaticEndothelialCellsToVegfc_01hr20minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_reverse 1 516 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep2%20%28MM%20XIV%20-%206%29.CNhs13162.12387-131F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12387-131F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneNhekH3k79me2Sig NHEK H3K79m2 bigWig 0.040000 6648.600098 NHEK H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 516 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHEK H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH3k79me2Sig\ type bigWig 0.040000 6648.600098\ wgEncodeUwDnasePanc1RawRep1 PANC1 Sg 1 bigWig 1.000000 49187.000000 PANC-1 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 516 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel PANC1 Sg 1\ subGroups view=zRSig cellType=t3PANC1 rep=rep1 treatment=None\ track wgEncodeUwDnasePanc1RawRep1\ type bigWig 1.000000 49187.000000\ wgEncodeAwgTfbsHaibSknshTaf1V0416101UniPk SK-N-SH TAF1 narrowPeak SK-N-SH TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis 1 516 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel SK-N-SH TAF1\ subGroups tier=a25 cellType=a25SKNSH factor=TAF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibSknshTaf1V0416101UniPk\ wgEncodeHaibTfbsA549Bcl3V0422111Etoh02PkRep1 A549 BCL3 EtOH 1 broadPeak A549 BCL3 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 517 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 BCL3 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 BCL3 EtOH 1\ subGroups view=Peaks factor=BCL3 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Bcl3V0422111Etoh02PkRep1\ type broadPeak\ wgEncodeAwgTfbsUwAg04449CtcfUniPk AG04449 CTCF narrowPeak AG04449 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 517 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04449 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel AG04449 CTCF\ subGroups tier=a30 cellType=AG04449 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwAg04449CtcfUniPk\ wgEncodeSydhTfbsHepg2Grp20ForsklnStdSig HEPG frsk GR20 Sd bigWig 0.000000 11595.200195 HEPG2 GRp20 Standard forskolin ChIP-seq Signal from ENCODE/SYDH 2 517 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 GRp20 Standard forskolin ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG frsk GR20 Sd\ subGroups view=Signal factor=GRP20 cellType=t2HEPG2 control=STD treatment=FORSKLN\ track wgEncodeSydhTfbsHepg2Grp20ForsklnStdSig\ type bigWig 0.000000 11595.200195\ wgEncodeCshlLongRnaSeqHfdpc01027033CellTotalPlusRep1 HFDPC cel tot + 1 bigWig 1.000000 2136746.000000 HFDPC whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 517 0 0 0 127 127 127 0 0 0 expression 0 longLabel HFDPC whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HFDPC cel tot + 1\ subGroups view=PlusSignal cellType=t3HFDPC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHfdpc01027033CellTotalPlusRep1\ type bigWig 1.000000 2136746.000000\ encTfChipPkENCFF993GXU K562 CBFA2T3 narrowPeak Transcription Factor ChIP-seq Peaks of CBFA2T3 in K562 from ENCODE 3 (ENCFF993GXU) 1 517 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CBFA2T3 in K562 from ENCODE 3 (ENCFF993GXU)\ parent encTfChipPk off\ shortLabel K562 CBFA2T3\ subGroups cellType=K562 factor=CBFA2T3\ track encTfChipPkENCFF993GXU\ wgEncodeUwHistoneLncapH3k04me3StdRawRep1 LNCP H3K4M3 Sg 1 bigWig 1.000000 3274.000000 LNCaP H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 517 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel LNCaP H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel LNCP H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3LNCAP rep=rep1 treatment=zNone\ track wgEncodeUwHistoneLncapH3k04me3StdRawRep1\ type bigWig 1.000000 3274.000000\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_forward 0 517 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep3%20%28MM%20XXII%20-%206%29.CNhs13281.12509-133A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12509-133A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_forward 1 517 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep3%20%28MM%20XXII%20-%206%29.CNhs13281.12509-133A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12509-133A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneNhekH4k20me1StdPk NHEK H4K20m1 broadPeak NHEK H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 517 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHEK H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH4k20me1StdPk\ type broadPeak\ wgEncodeUwDnasePanc1HotspotsRep2 PANC1 Ht 2 broadPeak PANC-1 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 517 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel PANC1 Ht 2\ subGroups view=Hot cellType=t3PANC1 rep=rep2 treatment=None\ track wgEncodeUwDnasePanc1HotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549Bcl3V0422111Etoh02RawRep1 A549 BCL3 EtOH 1 bigWig 0.164964 211.401993 A549 BCL3 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 518 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 BCL3 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 BCL3 EtOH 1\ subGroups view=RawSignal factor=BCL3 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Bcl3V0422111Etoh02RawRep1\ type bigWig 0.164964 211.401993\ wgEncodeAwgTfbsUwAg04450CtcfUniPk AG04450 CTCF narrowPeak AG04450 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 518 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG04450 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel AG04450 CTCF\ subGroups tier=a30 cellType=AG04450 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwAg04450CtcfUniPk\ wgEncodeSydhTfbsHepg2Hnf4aForsklnStdPk HEPG frsk HNF4 Sd narrowPeak HEPG2 HNF4A Standard forskolin ChIP-seq Peaks from ENCODE/SYDH 3 518 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 HNF4A Standard forskolin ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG frsk HNF4 Sd\ subGroups view=Peaks factor=HNF4A cellType=t2HEPG2 control=STD treatment=FORSKLN\ track wgEncodeSydhTfbsHepg2Hnf4aForsklnStdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHfdpc01005032CellTotalPlusRep2 HFDPC cel tot + 2 bigWig 1.000000 6315458.000000 HFDPC whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 518 0 0 0 127 127 127 0 0 0 expression 0 longLabel HFDPC whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HFDPC cel tot + 2\ subGroups view=PlusSignal cellType=t3HFDPC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHfdpc01005032CellTotalPlusRep2\ type bigWig 1.000000 6315458.000000\ encTfChipPkENCFF484DKT K562 CBX1 narrowPeak Transcription Factor ChIP-seq Peaks of CBX1 in K562 from ENCODE 3 (ENCFF484DKT) 1 518 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CBX1 in K562 from ENCODE 3 (ENCFF484DKT)\ parent encTfChipPk off\ shortLabel K562 CBX1\ subGroups cellType=K562 factor=CBX1\ track encTfChipPkENCFF484DKT\ wgEncodeUwHistoneLncapH3k04me3StdHotspotsRep2 LNCP H3K4M3 Ht 2 broadPeak LNCaP H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 518 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel LNCaP H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel LNCP H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3LNCAP rep=rep2 treatment=zNone\ track wgEncodeUwHistoneLncapH3k04me3StdHotspotsRep2\ type broadPeak\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_ctss_rev LymphaticEndothelialCellsToVegfc_01hr20minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_reverse 0 518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep3%20%28MM%20XXII%20-%206%29.CNhs13281.12509-133A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12509-133A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_tpm_rev LymphaticEndothelialCellsToVegfc_01hr20minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_reverse 1 518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep3%20%28MM%20XXII%20-%206%29.CNhs13281.12509-133A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12509-133A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneNhekH4k20me1StdSig NHEK H4K20m1 bigWig 0.040000 6310.120117 NHEK H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 518 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHEK H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekH4k20me1StdSig\ type bigWig 0.040000 6310.120117\ wgEncodeUwDnasePanc1PkRep2 PANC1 Pk 2 narrowPeak PANC-1 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 518 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel PANC1 Pk 2\ subGroups view=Peaks cellType=t3PANC1 rep=rep2 treatment=None\ track wgEncodeUwDnasePanc1PkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549Bcl3V0422111Etoh02PkRep2 A549 BCL3 EtOH 2 broadPeak A549 BCL3 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 519 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 BCL3 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 BCL3 EtOH 2\ subGroups view=Peaks factor=BCL3 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Bcl3V0422111Etoh02PkRep2\ type broadPeak\ wgEncodeAwgTfbsUwAg09309CtcfUniPk AG09309 CTCF narrowPeak AG09309 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 519 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09309 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel AG09309 CTCF\ subGroups tier=a30 cellType=AG09309 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwAg09309CtcfUniPk\ wgEncodeSydhTfbsHepg2Hnf4aForsklnStdSig HEPG frsk HNF4 Sd bigWig 0.000000 6595.799805 HEPG2 HNF4A Standard forskolin ChIP-seq Signal from ENCODE/SYDH 2 519 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 HNF4A Standard forskolin ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG frsk HNF4 Sd\ subGroups view=Signal factor=HNF4A cellType=t2HEPG2 control=STD treatment=FORSKLN\ track wgEncodeSydhTfbsHepg2Hnf4aForsklnStdSig\ type bigWig 0.000000 6595.799805\ wgEncodeCshlLongRnaSeqHmecCellLongnonpolyaAlnRep1 HMEC cel pA- A 1 bam HMEC whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 519 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMEC whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HMEC cel pA- A 1\ subGroups view=Alignments cellType=t3HMEC localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmecCellLongnonpolyaAlnRep1\ type bam\ encTfChipPkENCFF005BKP K562 CBX3 1 narrowPeak Transcription Factor ChIP-seq Peaks of CBX3 in K562 from ENCODE 3 (ENCFF005BKP) 1 519 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CBX3 in K562 from ENCODE 3 (ENCFF005BKP)\ parent encTfChipPk off\ shortLabel K562 CBX3 1\ subGroups cellType=K562 factor=CBX3\ track encTfChipPkENCFF005BKP\ wgEncodeUwHistoneLncapH3k04me3StdPkRep2 LNCP H3K4M3 Pk 2 narrowPeak LNCaP H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 519 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel LNCaP H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel LNCP H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3LNCAP rep=rep2 treatment=zNone\ track wgEncodeUwHistoneLncapH3k04me3StdPkRep2\ type narrowPeak\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_forward 0 519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep1%20%28MM%20XIX%20-%207%29.CNhs13105.12266-130A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12266-130A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_forward 1 519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep1%20%28MM%20XIX%20-%207%29.CNhs13105.12266-130A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12266-130A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneNhekPol2bStdPk NHEK Pol2 broadPeak NHEK Pol2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 519 179 0 134 217 127 194 1 0 0 regulation 1 color 179,0,134\ longLabel NHEK Pol2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHEK Pol2\ subGroups view=Peaks factor=POL2 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekPol2bStdPk\ type broadPeak\ wgEncodeUwDnasePanc1RawRep2 PANC1 Sg 2 bigWig 1.000000 52600.000000 PANC-1 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 519 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel PANC1 Sg 2\ subGroups view=zRSig cellType=t3PANC1 rep=rep2 treatment=None\ track wgEncodeUwDnasePanc1RawRep2\ type bigWig 1.000000 52600.000000\ wgEncodeHaibTfbsA549Bcl3V0422111Etoh02RawRep2 A549 BCL3 EtOH 2 bigWig 0.123749 195.492996 A549 BCL3 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 520 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 BCL3 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 BCL3 EtOH 2\ subGroups view=RawSignal factor=BCL3 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Bcl3V0422111Etoh02RawRep2\ type bigWig 0.123749 195.492996\ wgEncodeAwgTfbsUwAg09319CtcfUniPk AG09319 CTCF narrowPeak AG09319 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 520 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG09319 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel AG09319 CTCF\ subGroups tier=a30 cellType=AG09319 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwAg09319CtcfUniPk\ wgEncodeSydhTfbsHepg2Hsf1ForsklnStdPk HEPG frsk HSF1 Sd narrowPeak HEPG2 HSF1 Standard forskolin ChIP-seq Peaks from ENCODE/SYDH 3 520 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 HSF1 Standard forskolin ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG frsk HSF1 Sd\ subGroups view=Peaks factor=HSF1 cellType=t2HEPG2 control=STD treatment=FORSKLN\ track wgEncodeSydhTfbsHepg2Hsf1ForsklnStdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmecCellPamContigsV2 HMEC cel pA- C bed 6 + HMEC whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 520 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMEC whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HMEC cel pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3HMEC localization=CELL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqHmecCellPamContigsV2\ type bed 6 +\ encTfChipPkENCFF455TDM K562 CBX3 2 narrowPeak Transcription Factor ChIP-seq Peaks of CBX3 in K562 from ENCODE 3 (ENCFF455TDM) 1 520 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CBX3 in K562 from ENCODE 3 (ENCFF455TDM)\ parent encTfChipPk off\ shortLabel K562 CBX3 2\ subGroups cellType=K562 factor=CBX3\ track encTfChipPkENCFF455TDM\ wgEncodeUwHistoneLncapH3k04me3StdRawRep2 LNCP H3K4M3 Sg 2 bigWig 1.000000 3681.000000 LNCaP H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 520 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel LNCaP H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel LNCP H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3LNCAP rep=rep2 treatment=zNone\ track wgEncodeUwHistoneLncapH3k04me3StdRawRep2\ type bigWig 1.000000 3681.000000\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_ctss_rev LymphaticEndothelialCellsToVegfc_01hr40minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_reverse 0 520 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep1%20%28MM%20XIX%20-%207%29.CNhs13105.12266-130A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12266-130A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_tpm_rev LymphaticEndothelialCellsToVegfc_01hr40minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_reverse 1 520 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep1%20%28MM%20XIX%20-%207%29.CNhs13105.12266-130A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12266-130A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneNhekPol2bStdSig NHEK Pol2 bigWig 0.040000 3405.360107 NHEK Pol2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 520 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK Pol2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHEK Pol2\ subGroups view=Signal factor=POL2 cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekPol2bStdSig\ type bigWig 0.040000 3405.360107\ wgEncodeUwDnasePrecHotspotsRep1 PrEC Ht 1 broadPeak PrEC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 520 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PrEC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel PrEC Ht 1\ subGroups view=Hot cellType=t3PREC rep=rep1 treatment=None\ track wgEncodeUwDnasePrecHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549Cebpbsc150V0422111PkRep1 A549 CEBPB V11 1 broadPeak A549 CEBPB v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 521 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 CEBPB v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 CEBPB V11 1\ subGroups view=Peaks factor=CEBPB cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsA549Cebpbsc150V0422111PkRep1\ type broadPeak\ wgEncodeAwgTfbsUwAg10803CtcfUniPk AG10803 CTCF narrowPeak AG10803 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 521 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AG10803 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel AG10803 CTCF\ subGroups tier=a30 cellType=AG10803 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwAg10803CtcfUniPk\ wgEncodeSydhTfbsHepg2Hsf1ForsklnStdSig HEPG frsk HSF1 Sd bigWig 0.000000 6664.200195 HEPG2 HSF1 Standard forskolin ChIP-seq Signal from ENCODE/SYDH 2 521 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 HSF1 Standard forskolin ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG frsk HSF1 Sd\ subGroups view=Signal factor=HSF1 cellType=t2HEPG2 control=STD treatment=FORSKLN\ track wgEncodeSydhTfbsHepg2Hsf1ForsklnStdSig\ type bigWig 0.000000 6664.200195\ wgEncodeCshlLongRnaSeqHmecCellPamJunctions HMEC cel pA- J bed 6 + HMEC whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 521 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMEC whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HMEC cel pA- J\ subGroups view=Junctions cellType=t3HMEC localization=CELL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHmecCellPamJunctions\ type bed 6 +\ encTfChipPkENCFF062ARS K562 CBX5 narrowPeak Transcription Factor ChIP-seq Peaks of CBX5 in K562 from ENCODE 3 (ENCFF062ARS) 1 521 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CBX5 in K562 from ENCODE 3 (ENCFF062ARS)\ parent encTfChipPk off\ shortLabel K562 CBX5\ subGroups cellType=K562 factor=CBX5\ track encTfChipPkENCFF062ARS\ wgEncodeUwHistoneLncapInputStdRawRep1 LNCP In Sg 1 bigWig 1.000000 21185.000000 LNCaP Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 521 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel LNCaP Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel LNCP In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3LNCAP rep=rep1 treatment=zNone\ track wgEncodeUwHistoneLncapInputStdRawRep1\ type bigWig 1.000000 21185.000000\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_forward 0 521 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep2%20%28MM%20XIV%20-%207%29.CNhs13163.12388-131F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12388-131F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_forward 1 521 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep2%20%28MM%20XIV%20-%207%29.CNhs13163.12388-131F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12388-131F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneNhekControlStdSig NHEK Input bigWig 0.040000 10613.160156 NHEK Input Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 521 179 0 134 217 127 194 1 0 0 regulation 0 color 179,0,134\ longLabel NHEK Input Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHEK Input\ subGroups view=Signal factor=zCTRL cellType=t3NHEK treatment=zNONE\ track wgEncodeBroadHistoneNhekControlStdSig\ type bigWig 0.040000 10613.160156\ wgEncodeUwDnasePrecPkRep1 PrEC Pk 1 narrowPeak PrEC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 521 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PrEC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel PrEC Pk 1\ subGroups view=Peaks cellType=t3PREC rep=rep1 treatment=None\ track wgEncodeUwDnasePrecPkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549Cebpbsc150V0422111RawRep1 A549 CEBPB V11 1 bigWig 1.000000 3040.000000 A549 CEBPB v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 522 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 CEBPB v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 CEBPB V11 1\ subGroups view=RawSignal factor=CEBPB cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsA549Cebpbsc150V0422111RawRep1\ type bigWig 1.000000 3040.000000\ wgEncodeAwgTfbsUwAoafCtcfUniPk AoAF CTCF narrowPeak AoAF TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 522 0 0 0 127 127 127 0 0 0 regulation 1 longLabel AoAF TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel AoAF CTCF\ subGroups tier=a30 cellType=AOAF factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwAoafCtcfUniPk\ wgEncodeSydhTfbsHepg2Irf3IggrabPk HEPG IRF3 IgR narrowPeak HEPG2 IRF3 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 522 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 IRF3 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG IRF3 IgR\ subGroups view=Peaks factor=IRF3 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Irf3IggrabPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmecCellLongnonpolyaMinusRawSigRep1 HMEC cel pA- - 1 bigWig 1.000000 3515488.000000 HMEC whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 522 0 0 0 127 127 127 0 0 0 expression 0 longLabel HMEC whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HMEC cel pA- - 1\ subGroups view=MinusSignal cellType=t3HMEC localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmecCellLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 3515488.000000\ encTfChipPkENCFF874QUM K562 CC2D1A narrowPeak Transcription Factor ChIP-seq Peaks of CC2D1A in K562 from ENCODE 3 (ENCFF874QUM) 1 522 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CC2D1A in K562 from ENCODE 3 (ENCFF874QUM)\ parent encTfChipPk off\ shortLabel K562 CC2D1A\ subGroups cellType=K562 factor=CC2D1A\ track encTfChipPkENCFF874QUM\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_ctss_rev LymphaticEndothelialCellsToVegfc_01hr40minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_reverse 0 522 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep2%20%28MM%20XIV%20-%207%29.CNhs13163.12388-131F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12388-131F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_tpm_rev LymphaticEndothelialCellsToVegfc_01hr40minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_reverse 1 522 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep2%20%28MM%20XIV%20-%207%29.CNhs13163.12388-131F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12388-131F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNb4H3k4me3StdHotspotsRep1 NB4 H3K4M3 Ht 1 broadPeak NB4 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 522 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel NB4 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3NB4 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNb4H3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneNhlfCtcfStdPk NHLF CTCF broadPeak NHLF CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 522 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHLF CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHLF CTCF\ subGroups view=Peaks factor=CTCF cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfCtcfStdPk\ type broadPeak\ wgEncodeUwDnasePrecRawRep1 PrEC Sg 1 bigWig 1.000000 17665.000000 PrEC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 522 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PrEC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel PrEC Sg 1\ subGroups view=zRSig cellType=t3PREC rep=rep1 treatment=None\ track wgEncodeUwDnasePrecRawRep1\ type bigWig 1.000000 17665.000000\ wgEncodeHaibTfbsA549Cebpbsc150V0422111PkRep2 A549 CEBPB V11 2 broadPeak A549 CEBPB v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 523 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 CEBPB v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 CEBPB V11 2\ subGroups view=Peaks factor=CEBPB cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsA549Cebpbsc150V0422111PkRep2\ type broadPeak\ wgEncodeAwgTfbsUwBe2cCtcfUniPk BE2_C CTCF narrowPeak BE2_C TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 523 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BE2_C TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel BE2_C CTCF\ subGroups tier=a30 cellType=BE2C factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwBe2cCtcfUniPk\ wgEncodeSydhTfbsHepg2Irf3IggrabSig HEPG IRF3 IgR bigWig 0.000000 8989.900391 HEPG2 IRF3 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 523 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 IRF3 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG IRF3 IgR\ subGroups view=Signal factor=IRF3 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Irf3IggrabSig\ type bigWig 0.000000 8989.900391\ wgEncodeCshlLongRnaSeqHmecCellLongnonpolyaPlusRawSigRep1 HMEC cel pA- + 1 bigWig 1.000000 3876176.000000 HMEC whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 523 0 0 0 127 127 127 0 0 0 expression 0 longLabel HMEC whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HMEC cel pA- + 1\ subGroups view=PlusSignal cellType=t3HMEC localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmecCellLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 3876176.000000\ encTfChipPkENCFF583GKE K562 CCAR2 narrowPeak Transcription Factor ChIP-seq Peaks of CCAR2 in K562 from ENCODE 3 (ENCFF583GKE) 1 523 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CCAR2 in K562 from ENCODE 3 (ENCFF583GKE)\ parent encTfChipPk off\ shortLabel K562 CCAR2\ subGroups cellType=K562 factor=CCAR2\ track encTfChipPkENCFF583GKE\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_forward 0 523 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep3%20%28MM%20XXII%20-%207%29.CNhs13282.12510-133A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12510-133A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_forward 1 523 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep3%20%28MM%20XXII%20-%207%29.CNhs13282.12510-133A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12510-133A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNb4H3k4me3StdPkRep1 NB4 H3K4M3 Pk 1 narrowPeak NB4 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 523 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel NB4 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3NB4 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNb4H3k4me3StdPkRep1\ type narrowPeak\ wgEncodeBroadHistoneNhlfCtcfStdSig NHLF CTCF bigWig 0.040000 14121.160156 NHLF CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 523 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHLF CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHLF CTCF\ subGroups view=Signal factor=CTCF cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfCtcfStdSig\ type bigWig 0.040000 14121.160156\ wgEncodeUwDnasePrecHotspotsRep2 PrEC Ht 2 broadPeak PrEC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 523 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PrEC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel PrEC Ht 2\ subGroups view=Hot cellType=t3PREC rep=rep2 treatment=None\ track wgEncodeUwDnasePrecHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549Cebpbsc150V0422111RawRep2 A549 CEBPB V11 2 bigWig 1.000000 3002.000000 A549 CEBPB v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 524 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 CEBPB v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 CEBPB V11 2\ subGroups view=RawSignal factor=CEBPB cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsA549Cebpbsc150V0422111RawRep2\ type bigWig 1.000000 3002.000000\ wgEncodeAwgTfbsUwBjCtcfUniPk BJ CTCF narrowPeak BJ TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 524 0 0 0 127 127 127 0 0 0 regulation 1 longLabel BJ TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel BJ CTCF\ subGroups tier=a30 cellType=BJ factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwBjCtcfUniPk\ wgEncodeSydhTfbsHepg2JundIggrabPk HEPG JunD IgR narrowPeak HEPG2 JunD IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 524 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 JunD IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG JunD IgR\ subGroups view=Peaks factor=JUND cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2JundIggrabPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmecCellPapAlnRep1 HMEC cel pA+ A 1 bam HMEC whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 524 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMEC whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HMEC cel pA+ A 1\ subGroups view=Alignments cellType=t3HMEC localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmecCellPapAlnRep1\ type bam\ encTfChipPkENCFF643TEZ K562 CDC5L narrowPeak Transcription Factor ChIP-seq Peaks of CDC5L in K562 from ENCODE 3 (ENCFF643TEZ) 1 524 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CDC5L in K562 from ENCODE 3 (ENCFF643TEZ)\ parent encTfChipPk off\ shortLabel K562 CDC5L\ subGroups cellType=K562 factor=CDC5L\ track encTfChipPkENCFF643TEZ\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_ctss_rev LymphaticEndothelialCellsToVegfc_01hr40minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_reverse 0 524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep3%20%28MM%20XXII%20-%207%29.CNhs13282.12510-133A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12510-133A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_tpm_rev LymphaticEndothelialCellsToVegfc_01hr40minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_reverse 1 524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep3%20%28MM%20XXII%20-%207%29.CNhs13282.12510-133A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12510-133A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNb4H3k4me3StdRawRep1 NB4 H3K4M3 Sg 1 bigWig 1.000000 3916.000000 NB4 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 524 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NB4 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel NB4 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3NB4 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNb4H3k4me3StdRawRep1\ type bigWig 1.000000 3916.000000\ wgEncodeBroadHistoneNhlfEzh239875Pk NHLF EZH2 broadPeak NHLF EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 524 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHLF EZH2 (39875) Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHLF EZH2\ subGroups view=Peaks factor=EZH239875 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfEzh239875Pk\ type broadPeak\ wgEncodeUwDnasePrecPkRep2 PrEC Pk 2 narrowPeak PrEC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 524 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PrEC DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel PrEC Pk 2\ subGroups view=Peaks cellType=t3PREC rep=rep2 treatment=None\ track wgEncodeUwDnasePrecPkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549Creb1sc240V0416102Dex100nmPkRep1 A549 CREB1 DEX 1 broadPeak A549 CREB1 DEX 100nM v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 525 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 CREB1 DEX 100nM v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 CREB1 DEX 1\ subGroups view=Peaks factor=CREB1SC240 cellType=t2A549 protocol=V0416102 treatment=DEX100NM rep=rep1\ track wgEncodeHaibTfbsA549Creb1sc240V0416102Dex100nmPkRep1\ type broadPeak\ wgEncodeAwgTfbsUwCaco2CtcfUniPk Caco-2 CTCF narrowPeak Caco-2 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 525 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Caco-2 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel Caco-2 CTCF\ subGroups tier=a30 cellType=CACO2 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwCaco2CtcfUniPk\ wgEncodeSydhTfbsHepg2JundIggrabSig HEPG JunD IgR bigWig 0.000000 61121.699219 HEPG2 JunD IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 525 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 JunD IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG JunD IgR\ subGroups view=Signal factor=JUND cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2JundIggrabSig\ type bigWig 0.000000 61121.699219\ wgEncodeCshlLongRnaSeqHmecCellPapContigsV2 HMEC cel pA+ C bed 6 + HMEC whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 525 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMEC whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HMEC cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3HMEC localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqHmecCellPapContigsV2\ type bed 6 +\ encTfChipPkENCFF429XKT K562 CEBPB narrowPeak Transcription Factor ChIP-seq Peaks of CEBPB in K562 from ENCODE 3 (ENCFF429XKT) 1 525 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CEBPB in K562 from ENCODE 3 (ENCFF429XKT)\ parent encTfChipPk off\ shortLabel K562 CEBPB\ subGroups cellType=K562 factor=CEBPB\ track encTfChipPkENCFF429XKT\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_forward 0 525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%208%29.CNhs13106.12267-130A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12267-130A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_forward 1 525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%208%29.CNhs13106.12267-130A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12267-130A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNb4InputStdRawRep1 NB4 In Sg 1 bigWig 1.000000 18098.000000 NB4 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 525 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NB4 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel NB4 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3NB4 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNb4InputStdRawRep1\ type bigWig 1.000000 18098.000000\ wgEncodeBroadHistoneNhlfEzh239875Sig NHLF EZH2 bigWig 0.040000 35512.921875 NHLF EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 525 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHLF EZH2 (39875) Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHLF EZH2\ subGroups view=Signal factor=EZH239875 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfEzh239875Sig\ type bigWig 0.040000 35512.921875\ wgEncodeUwDnasePrecRawRep2 PrEC Sg 2 bigWig 1.000000 17986.000000 PrEC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 525 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PrEC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel PrEC Sg 2\ subGroups view=zRSig cellType=t3PREC rep=rep2 treatment=None\ track wgEncodeUwDnasePrecRawRep2\ type bigWig 1.000000 17986.000000\ wgEncodeHaibTfbsA549Creb1sc240V0416102Dex100nmRawRep1 A549 CREB1 DEX 1 bigWig 0.169944 126.098999 A549 CREB1 DEX 100nM v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 526 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 CREB1 DEX 100nM v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 CREB1 DEX 1\ subGroups view=RawSignal factor=CREB1SC240 cellType=t2A549 protocol=V0416102 treatment=DEX100NM rep=rep1\ track wgEncodeHaibTfbsA549Creb1sc240V0416102Dex100nmRawRep1\ type bigWig 0.169944 126.098999\ wgEncodeAwgTfbsBroadDnd41CtcfUniPk Dnd41 CTCF narrowPeak Dnd41 TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis 1 526 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Dnd41 TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel Dnd41 CTCF\ subGroups tier=a30 cellType=DND41 factor=CTCF lab=Broad\ track wgEncodeAwgTfbsBroadDnd41CtcfUniPk\ wgEncodeSydhTfbsHepg2Maffm8194IggrabPk HEPG MafF IgR narrowPeak HEPG2 MafF IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 526 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 MafF IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG MafF IgR\ subGroups view=Peaks factor=MAFFM8194 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Maffm8194IggrabPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmecCellPapJunctions HMEC cel pA+ J bed 6 + HMEC whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 526 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMEC whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HMEC cel pA+ J\ subGroups view=Junctions cellType=t3HMEC localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHmecCellPapJunctions\ type bed 6 +\ encTfChipPkENCFF859FVX K562 CHAMP1 1 narrowPeak Transcription Factor ChIP-seq Peaks of CHAMP1 in K562 from ENCODE 3 (ENCFF859FVX) 1 526 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CHAMP1 in K562 from ENCODE 3 (ENCFF859FVX)\ parent encTfChipPk off\ shortLabel K562 CHAMP1 1\ subGroups cellType=K562 factor=CHAMP1\ track encTfChipPkENCFF859FVX\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_ctss_rev LymphaticEndothelialCellsToVegfc_02hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_reverse 0 526 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%208%29.CNhs13106.12267-130A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12267-130A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_tpm_rev LymphaticEndothelialCellsToVegfc_02hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_reverse 1 526 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%208%29.CNhs13106.12267-130A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12267-130A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhdfneoH3k4me3StdHotspotsRep1 NHDF H3K4M3 Ht 1 broadPeak NHDF-neo H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 526 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel NHDF H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3NHDFNEO rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhdfneoH3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneNhlfH2azPk NHLF H2A.Z broadPeak NHLF H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 526 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHLF H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHLF H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH2azPk\ type broadPeak\ wgEncodeUwDnaseRpmi7951HotspotsRep1 RPMI7951 Ht 1 broadPeak RPMI-7951 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 526 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPMI-7951 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel RPMI7951 Ht 1\ subGroups view=Hot cellType=t3RPMI7951 treatment=None rep=rep1\ track wgEncodeUwDnaseRpmi7951HotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549Creb1sc240V0416102Dex100nmPkRep2 A549 CREB1 DEX 2 broadPeak A549 CREB1 DEX 100nM v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 527 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 CREB1 DEX 100nM v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 CREB1 DEX 2\ subGroups view=Peaks factor=CREB1SC240 cellType=t2A549 protocol=V0416102 treatment=DEX100NM rep=rep2\ track wgEncodeHaibTfbsA549Creb1sc240V0416102Dex100nmPkRep2\ type broadPeak\ wgEncodeAwgTfbsBroadDnd41Ezh239875UniPk Dnd41 EZH2 narrowPeak Dnd41 TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis 1 527 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Dnd41 TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel Dnd41 EZH2\ subGroups tier=a30 cellType=DND41 factor=EZH2 lab=Broad\ track wgEncodeAwgTfbsBroadDnd41Ezh239875UniPk\ wgEncodeSydhTfbsHepg2Maffm8194IggrabSig HEPG MafF IgR bigWig 1.000000 19493.000000 HEPG2 MafF IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 527 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 MafF IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG MafF IgR\ subGroups view=Signal factor=MAFFM8194 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Maffm8194IggrabSig\ type bigWig 1.000000 19493.000000\ wgEncodeCshlLongRnaSeqHmecCellPapMinusRawSigRep1 HMEC cel pA+ - 1 bigWig 1.000000 639015.000000 HMEC whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 527 0 0 0 127 127 127 0 0 0 expression 0 longLabel HMEC whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HMEC cel pA+ - 1\ subGroups view=MinusSignal cellType=t3HMEC localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmecCellPapMinusRawSigRep1\ type bigWig 1.000000 639015.000000\ encTfChipPkENCFF602FRL K562 CHAMP1 2 narrowPeak Transcription Factor ChIP-seq Peaks of CHAMP1 in K562 from ENCODE 3 (ENCFF602FRL) 1 527 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CHAMP1 in K562 from ENCODE 3 (ENCFF602FRL)\ parent encTfChipPk off\ shortLabel K562 CHAMP1 2\ subGroups cellType=K562 factor=CHAMP1\ track encTfChipPkENCFF602FRL\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_forward 0 527 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%208%29.CNhs13164.12389-131F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12389-131F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_forward 1 527 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%208%29.CNhs13164.12389-131F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12389-131F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhdfneoH3k4me3StdPkRep1 NHDF H3K4M3 Pk 1 narrowPeak NHDF-neo H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 527 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel NHDF H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3NHDFNEO rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhdfneoH3k4me3StdPkRep1\ type narrowPeak\ wgEncodeBroadHistoneNhlfH2azSig NHLF H2A.Z bigWig 0.040000 44019.000000 NHLF H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 527 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHLF H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHLF H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH2azSig\ type bigWig 0.040000 44019.000000\ wgEncodeUwDnaseRpmi7951PkRep1 RPMI7951 Pk 1 narrowPeak RPMI-7951 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 527 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPMI-7951 DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel RPMI7951 Pk 1\ subGroups view=Peaks cellType=t3RPMI7951 treatment=None rep=rep1\ track wgEncodeUwDnaseRpmi7951PkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549Creb1sc240V0416102Dex100nmRawRep2 A549 CREB1 DEX 2 bigWig 0.258863 313.613007 A549 CREB1 DEX 100nM v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 528 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 CREB1 DEX 100nM v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 CREB1 DEX 2\ subGroups view=RawSignal factor=CREB1SC240 cellType=t2A549 protocol=V0416102 treatment=DEX100NM rep=rep2\ track wgEncodeHaibTfbsA549Creb1sc240V0416102Dex100nmRawRep2\ type bigWig 0.258863 313.613007\ wgEncodeAwgTfbsHaibEcc1CtcfcV0416102Dm002p1hUniPk ECC-1+DMSO CTCF narrowPeak ECC-1 (DMSO) TFBS Uniform Peaks of CTCF_(SC-5916) ENCODE/HudsonAlpha/Analysis 1 528 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 (DMSO) TFBS Uniform Peaks of CTCF_(SC-5916) ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel ECC-1+DMSO CTCF\ subGroups tier=a30 cellType=ECC1 factor=CTCF lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibEcc1CtcfcV0416102Dm002p1hUniPk\ wgEncodeSydhTfbsHepg2Mafkab50322IggrabPk HEPG MafK IgR narrowPeak HEPG2 MafK IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 528 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 MafK IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG MafK IgR\ subGroups view=Peaks factor=MAFK cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Mafkab50322IggrabPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmecCellPapPlusRawSigRep1 HMEC cel pA+ + 1 bigWig 1.000000 540932.000000 HMEC whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 528 0 0 0 127 127 127 0 0 0 expression 0 longLabel HMEC whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HMEC cel pA+ + 1\ subGroups view=PlusSignal cellType=t3HMEC localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmecCellPapPlusRawSigRep1\ type bigWig 1.000000 540932.000000\ encTfChipPkENCFF684MLP K562 COPS2 narrowPeak Transcription Factor ChIP-seq Peaks of COPS2 in K562 from ENCODE 3 (ENCFF684MLP) 1 528 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of COPS2 in K562 from ENCODE 3 (ENCFF684MLP)\ parent encTfChipPk off\ shortLabel K562 COPS2\ subGroups cellType=K562 factor=COPS2\ track encTfChipPkENCFF684MLP\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_ctss_rev LymphaticEndothelialCellsToVegfc_02hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_reverse 0 528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%208%29.CNhs13164.12389-131F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12389-131F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_tpm_rev LymphaticEndothelialCellsToVegfc_02hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_reverse 1 528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%208%29.CNhs13164.12389-131F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12389-131F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhdfneoH3k4me3StdRawRep1 NHDF H3K4M3 Sg 1 bigWig 1.000000 8338.000000 NHDF-neo H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 528 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHDF-neo H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel NHDF H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3NHDFNEO rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhdfneoH3k4me3StdRawRep1\ type bigWig 1.000000 8338.000000\ wgEncodeBroadHistoneNhlfH3k4me1StdPk NHLF H3K4m1 broadPeak NHLF H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 528 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHLF H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHLF H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k4me1StdPk\ type broadPeak\ wgEncodeUwDnaseRpmi7951RawRep1 RPMI7951 Sg 1 bigWig 1.000000 24313.000000 RPMI-7951 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 528 0 0 0 127 127 127 0 0 0 regulation 0 longLabel RPMI-7951 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel RPMI7951 Sg 1\ subGroups view=zRSig cellType=t3RPMI7951 treatment=None rep=rep1\ track wgEncodeUwDnaseRpmi7951RawRep1\ type bigWig 1.000000 24313.000000\ wgEncodeHaibTfbsA549Creb1sc240Pcr1xEtoh02RawRep1 A549 CREB1 EtOH 1 bigWig 0.250408 180.606995 A549 CREB1 EtOH PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 529 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 CREB1 EtOH PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 CREB1 EtOH 1\ subGroups view=RawSignal factor=CREB1SC240 cellType=t2A549 protocol=PCR1X treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Creb1sc240Pcr1xEtoh02RawRep1\ type bigWig 0.250408 180.606995\ wgEncodeAwgTfbsHaibEcc1EraaV0416102Bpa1hUniPk ECC-1+BPA ESR1 narrowPeak ECC-1 (BPA) TFBS Uniform Peaks of ERalpha_a from ENCODE/HudsonAlpha/Analysis 1 529 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 (BPA) TFBS Uniform Peaks of ERalpha_a from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel ECC-1+BPA ESR1\ subGroups tier=a30 cellType=ECC1 factor=ESR1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibEcc1EraaV0416102Bpa1hUniPk\ wgEncodeSydhTfbsHepg2Mafkab50322IggrabSig HEPG MafK IgR bigWig 1.000000 38013.000000 HEPG2 MafK IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 529 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 MafK IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG MafK IgR\ subGroups view=Signal factor=MAFK cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Mafkab50322IggrabSig\ type bigWig 1.000000 38013.000000\ wgEncodeCshlLongRnaSeqHmepcCellTotalAlnRep1 HMEpC cel tot A 1 bam HMEpC whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 529 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMEpC whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HMEpC cel tot A 1\ subGroups view=Alignments cellType=t3HMEPC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmepcCellTotalAlnRep1\ type bam\ encTfChipPkENCFF582YPB K562 CREB3L1 narrowPeak Transcription Factor ChIP-seq Peaks of CREB3L1 in K562 from ENCODE 3 (ENCFF582YPB) 1 529 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CREB3L1 in K562 from ENCODE 3 (ENCFF582YPB)\ parent encTfChipPk off\ shortLabel K562 CREB3L1\ subGroups cellType=K562 factor=CREB3L1\ track encTfChipPkENCFF582YPB\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_forward 0 529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%208%29.CNhs13283.12511-133A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12511-133A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_forward 1 529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%208%29.CNhs13283.12511-133A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12511-133A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhdfneoH3k4me3StdHotspotsRep2 NHDF H3K4M3 Ht 2 broadPeak NHDF-neo H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 529 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel NHDF H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3NHDFNEO rep=rep2 treatment=zNone\ track wgEncodeUwHistoneNhdfneoH3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneNhlfH3k4me1StdSig NHLF H3K4m1 bigWig 0.040000 14138.480469 NHLF H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 529 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHLF H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHLF H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k4me1StdSig\ type bigWig 0.040000 14138.480469\ wgEncodeUwDnaseRpmi7951HotspotsRep2 RPMI7951 Ht 2 broadPeak RPMI-7951 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 529 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPMI-7951 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel RPMI7951 Ht 2\ subGroups view=Hot cellType=t3RPMI7951 treatment=None rep=rep2\ track wgEncodeUwDnaseRpmi7951HotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549Creb1sc240V0416102Etoh02RawRep2 A549 CREB1 EtOH 2 bigWig 0.235316 332.088989 A549 CREB1 EtOH v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 530 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 CREB1 EtOH v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 CREB1 EtOH 2\ subGroups view=RawSignal factor=CREB1SC240 cellType=t2A549 protocol=V0416102 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Creb1sc240V0416102Etoh02RawRep2\ type bigWig 0.235316 332.088989\ wgEncodeAwgTfbsHaibEcc1EralphaaV0416102Est10nm1hUniPk ECC-1+Estr ESR1 narrowPeak ECC-1 (Estradiol) TFBS Uniform Peaks of ERalpha_a ENCODE/HudsonAlpha/Analysis 1 530 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 (Estradiol) TFBS Uniform Peaks of ERalpha_a ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel ECC-1+Estr ESR1\ subGroups tier=a30 cellType=ECC1 factor=ESR1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibEcc1EralphaaV0416102Est10nm1hUniPk\ wgEncodeSydhTfbsHepg2MaxIggrabPk HEPG Max IgR narrowPeak HEPG2 Max IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 530 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 Max IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG Max IgR\ subGroups view=Peaks factor=MAX cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2MaxIggrabPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmepcCellTotalContigs HMEpC cel tot C bed 6 + HMEpC whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 530 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMEpC whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HMEpC cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3HMEPC localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqHmepcCellTotalContigs\ type bed 6 +\ encTfChipPkENCFF369HGX K562 CREBBP narrowPeak Transcription Factor ChIP-seq Peaks of CREBBP in K562 from ENCODE 3 (ENCFF369HGX) 1 530 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CREBBP in K562 from ENCODE 3 (ENCFF369HGX)\ parent encTfChipPk off\ shortLabel K562 CREBBP\ subGroups cellType=K562 factor=CREBBP\ track encTfChipPkENCFF369HGX\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_ctss_rev LymphaticEndothelialCellsToVegfc_02hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_reverse 0 530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%208%29.CNhs13283.12511-133A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12511-133A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_tpm_rev LymphaticEndothelialCellsToVegfc_02hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_reverse 1 530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%208%29.CNhs13283.12511-133A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12511-133A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhdfneoH3k4me3StdPkRep2 NHDF H3K4M3 Pk 2 narrowPeak NHDF-neo H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 530 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel NHDF H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3NHDFNEO rep=rep2 treatment=zNone\ track wgEncodeUwHistoneNhdfneoH3k4me3StdPkRep2\ type narrowPeak\ wgEncodeBroadHistoneNhlfH3k4me2StdPk NHLF H3K4m2 broadPeak NHLF H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 530 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHLF H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHLF H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k4me2StdPk\ type broadPeak\ wgEncodeUwDnaseRpmi7951PkRep2 RPMI7951 Pk 2 narrowPeak RPMI-7951 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 530 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPMI-7951 DNaseI HS Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel RPMI7951 Pk 2\ subGroups view=Peaks cellType=t3RPMI7951 treatment=None rep=rep2\ track wgEncodeUwDnaseRpmi7951PkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549Ctcfsc5916Pcr1xDex100nmPkRep1 A549 CTCF DEX 1 broadPeak A549 CTCF 5916 DEX 100nM PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 531 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 CTCF 5916 DEX 100nM PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 CTCF DEX 1\ subGroups view=Peaks factor=CTCFSC5916 cellType=t2A549 protocol=PCR1X treatment=DEX100NM rep=rep1\ track wgEncodeHaibTfbsA549Ctcfsc5916Pcr1xDex100nmPkRep1\ type broadPeak\ wgEncodeAwgTfbsHaibEcc1EralphaaV0416102Gen1hUniPk ECC-1+Genist ESR1 narrowPeak ECC-1 (Genistein) TFBS Uniform Peaks of ERalpha_a ENCODE/HudsonAlpha/Analysis 1 531 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 (Genistein) TFBS Uniform Peaks of ERalpha_a ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel ECC-1+Genist ESR1\ subGroups tier=a30 cellType=ECC1 factor=ESR1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibEcc1EralphaaV0416102Gen1hUniPk\ wgEncodeSydhTfbsHepg2MaxIggrabSig HEPG Max IgR bigWig 1.000000 13657.000000 HEPG2 Max IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 531 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 Max IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG Max IgR\ subGroups view=Signal factor=MAX cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2MaxIggrabSig\ type bigWig 1.000000 13657.000000\ wgEncodeCshlLongRnaSeqHmepcCellTotalJunctions HMEpC cel tot J bed 6 + HMEpC whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 531 0 0 0 127 127 127 0 0 0 expression 1 longLabel HMEpC whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HMEpC cel tot J\ subGroups view=Junctions cellType=t3HMEPC localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHmepcCellTotalJunctions\ type bed 6 +\ encTfChipPkENCFF948TXN K562 CREM narrowPeak Transcription Factor ChIP-seq Peaks of CREM in K562 from ENCODE 3 (ENCFF948TXN) 1 531 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CREM in K562 from ENCODE 3 (ENCFF948TXN)\ parent encTfChipPk off\ shortLabel K562 CREM\ subGroups cellType=K562 factor=CREM\ track encTfChipPkENCFF948TXN\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_forward 0 531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%209%29.CNhs13107.12268-130A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12268-130A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_forward 1 531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%209%29.CNhs13107.12268-130A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12268-130A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhdfneoH3k4me3StdRawRep2 NHDF H3K4M3 Sg 2 bigWig 1.000000 9369.000000 NHDF-neo H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 531 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHDF-neo H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel NHDF H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3NHDFNEO rep=rep2 treatment=zNone\ track wgEncodeUwHistoneNhdfneoH3k4me3StdRawRep2\ type bigWig 1.000000 9369.000000\ wgEncodeBroadHistoneNhlfH3k4me2StdSig NHLF H3K4m2 bigWig 0.040000 12378.839844 NHLF H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 531 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHLF H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHLF H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k4me2StdSig\ type bigWig 0.040000 12378.839844\ wgEncodeUwDnaseRpmi7951RawRep2 RPMI7951 Sg 2 bigWig 1.000000 30485.000000 RPMI-7951 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 531 0 0 0 127 127 127 0 0 0 regulation 0 longLabel RPMI-7951 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel RPMI7951 Sg 2\ subGroups view=zRSig cellType=t3RPMI7951 treatment=None rep=rep2\ track wgEncodeUwDnaseRpmi7951RawRep2\ type bigWig 1.000000 30485.000000\ wgEncodeHaibTfbsA549Ctcfsc5916Pcr1xDex100nmRawRep1 A549 CTCF DEX 1 bigWig 0.133454 115.070999 A549 CTCF 5916 DEX 100nM PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 532 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 CTCF 5916 DEX 100nM PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 CTCF DEX 1\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t2A549 protocol=PCR1X treatment=DEX100NM rep=rep1\ track wgEncodeHaibTfbsA549Ctcfsc5916Pcr1xDex100nmRawRep1\ type bigWig 0.133454 115.070999\ wgEncodeAwgTfbsHaibEcc1Foxa1sc6553V0416102Dm002p1hUniPk ECC-1+DMSO FOXA1 narrowPeak ECC-1 (DMSO) TFBS Uniform Peaks of FOXA1_(SC-6553) ENCODE/HudsonAlpha/Analysis 1 532 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 (DMSO) TFBS Uniform Peaks of FOXA1_(SC-6553) ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel ECC-1+DMSO FOXA1\ subGroups tier=a30 cellType=ECC1 factor=FOXA1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibEcc1Foxa1sc6553V0416102Dm002p1hUniPk\ wgEncodeSydhTfbsHepg2Mazab85725IggrabPk HEPG MAZ IgR narrowPeak HEPG2 MAZ IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 532 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 MAZ IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG MAZ IgR\ subGroups view=Peaks factor=MAZAB85725 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Mazab85725IggrabPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmepcCellTotalMinusRep1 HMEpC cel tot - 1 bigWig 1.000000 6497699.000000 HMEpC whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 532 0 0 0 127 127 127 0 0 0 expression 0 longLabel HMEpC whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HMEpC cel tot - 1\ subGroups view=MinusSignal cellType=t3HMEPC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmepcCellTotalMinusRep1\ type bigWig 1.000000 6497699.000000\ encTfChipPkENCFF152VMJ K562 CTBP1 narrowPeak Transcription Factor ChIP-seq Peaks of CTBP1 in K562 from ENCODE 3 (ENCFF152VMJ) 1 532 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CTBP1 in K562 from ENCODE 3 (ENCFF152VMJ)\ parent encTfChipPk off\ shortLabel K562 CTBP1\ subGroups cellType=K562 factor=CTBP1\ track encTfChipPkENCFF152VMJ\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_ctss_rev LymphaticEndothelialCellsToVegfc_02hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_reverse 0 532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%209%29.CNhs13107.12268-130A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12268-130A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_tpm_rev LymphaticEndothelialCellsToVegfc_02hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_reverse 1 532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%209%29.CNhs13107.12268-130A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12268-130A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhdfneoInputStdRawRep1 NHDF In Sg 1 bigWig 1.000000 26277.000000 NHDF-neo Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 532 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHDF-neo Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel NHDF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3NHDFNEO rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhdfneoInputStdRawRep1\ type bigWig 1.000000 26277.000000\ wgEncodeBroadHistoneNhlfH3k4me3StdPk NHLF H3K4m3 broadPeak NHLF H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 532 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHLF H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHLF H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k4me3StdPk\ type broadPeak\ wgEncodeUwDnaseRptecHotspotsRep1 RPTEC Ht 1 broadPeak RPTEC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 532 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPTEC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel RPTEC Ht 1\ subGroups view=Hot cellType=t3RPTEC rep=rep1 treatment=None\ track wgEncodeUwDnaseRptecHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549Ctcfsc5916Pcr1xDex100nmPkRep2 A549 CTCF DEX 2 broadPeak A549 CTCF 5916 DEX 100nM PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 533 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 CTCF 5916 DEX 100nM PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 CTCF DEX 2\ subGroups view=Peaks factor=CTCFSC5916 cellType=t2A549 protocol=PCR1X treatment=DEX100NM rep=rep2\ track wgEncodeHaibTfbsA549Ctcfsc5916Pcr1xDex100nmPkRep2\ type broadPeak\ wgEncodeAwgTfbsHaibEcc1GrV0416102Dex100nmUniPk ECC-1+Dx100 NR3C1 narrowPeak ECC-1 (DEX_100nM) TFBS Uniform Peaks of GR from ENCODE/HudsonAlpha/Analysis 1 533 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 (DEX_100nM) TFBS Uniform Peaks of GR from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel ECC-1+Dx100 NR3C1\ subGroups tier=a30 cellType=ECC1 factor=NR3C1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibEcc1GrV0416102Dex100nmUniPk\ wgEncodeSydhTfbsHepg2Mazab85725IggrabSig HEPG MAZ IgR bigWig 1.000000 14133.000000 HEPG2 MAZ IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 533 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 MAZ IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG MAZ IgR\ subGroups view=Signal factor=MAZAB85725 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Mazab85725IggrabSig\ type bigWig 1.000000 14133.000000\ wgEncodeCshlLongRnaSeqHmepcCellTotalPlusRep1 HMEpC cel tot + 1 bigWig 1.000000 5904130.000000 HMEpC whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 533 0 0 0 127 127 127 0 0 0 expression 0 longLabel HMEpC whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HMEpC cel tot + 1\ subGroups view=PlusSignal cellType=t3HMEPC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmepcCellTotalPlusRep1\ type bigWig 1.000000 5904130.000000\ encTfChipPkENCFF085HTY K562 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF085HTY) 1 533 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF085HTY)\ parent encTfChipPk on\ shortLabel K562 CTCF 1\ subGroups cellType=K562 factor=CTCF\ track encTfChipPkENCFF085HTY\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_forward 0 533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%209%29.CNhs13165.12390-131F5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12390-131F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_forward 1 533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%209%29.CNhs13165.12390-131F5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12390-131F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k4me3StdHotspotsRep1 NHEK H3K4M3 Ht 1 broadPeak NHEK H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 533 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel NHEK H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3NHEK rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhekH3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneNhlfH3k4me3StdSig NHLF H3K4m3 bigWig 0.040000 25393.160156 NHLF H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 533 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHLF H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHLF H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k4me3StdSig\ type bigWig 0.040000 25393.160156\ wgEncodeUwDnaseRptecPkRep1 RPTEC Pk 1 narrowPeak RPTEC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 533 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPTEC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel RPTEC Pk 1\ subGroups view=Peaks cellType=t3RPTEC rep=rep1 treatment=None\ track wgEncodeUwDnaseRptecPkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549Ctcfsc5916Pcr1xDex100nmRawRep2 A549 CTCF DEX 2 bigWig 0.210514 117.781998 A549 CTCF 5916 DEX 100nM PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 534 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 CTCF 5916 DEX 100nM PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 CTCF DEX 2\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t2A549 protocol=PCR1X treatment=DEX100NM rep=rep2\ track wgEncodeHaibTfbsA549Ctcfsc5916Pcr1xDex100nmRawRep2\ type bigWig 0.210514 117.781998\ wgEncodeAwgTfbsHaibEcc1Pol2V0416102Dm002p1hUniPk ECC-1+DMSO POLR2A narrowPeak ECC-1 (DMSO) TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis 1 534 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 (DMSO) TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel ECC-1+DMSO POLR2A\ subGroups tier=a30 cellType=ECC1 factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibEcc1Pol2V0416102Dm002p1hUniPk\ wgEncodeSydhTfbsHepg2Mxi1StdPk HEPG Mxi1 Std narrowPeak HEPG2 Mxi1 Standard ChIP-seq Peaks from ENCODE/SYDH 3 534 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 Mxi1 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG Mxi1 Std\ subGroups view=Peaks factor=MXI1 cellType=t2HEPG2 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHepg2Mxi1StdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmncpbCellTotalAlnRep1V2 hMNPB cel tot A 1 bam hMNC-PB whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 534 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMNC-PB whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel hMNPB cel tot A 1\ subGroups view=Alignments cellType=t3HMNCPB localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmncpbCellTotalAlnRep1V2\ type bam\ encTfChipPkENCFF738TKN K562 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF738TKN) 1 534 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF738TKN)\ parent encTfChipPk off\ shortLabel K562 CTCF 2\ subGroups cellType=K562 factor=CTCF\ track encTfChipPkENCFF738TKN\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_ctss_rev LymphaticEndothelialCellsToVegfc_02hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_reverse 0 534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%209%29.CNhs13165.12390-131F5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12390-131F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_tpm_rev LymphaticEndothelialCellsToVegfc_02hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_reverse 1 534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%209%29.CNhs13165.12390-131F5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12390-131F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k4me3StdPkRep1 NHEK H3K4M3 Pk 1 narrowPeak NHEK H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 534 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel NHEK H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3NHEK rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhekH3k4me3StdPkRep1\ type narrowPeak\ wgEncodeBroadHistoneNhlfH3k9acStdPk NHLF H3K9ac broadPeak NHLF H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 534 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHLF H3K9ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHLF H3K9ac\ subGroups view=Peaks factor=H3K09AC cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k9acStdPk\ type broadPeak\ wgEncodeUwDnaseRptecRawRep1 RPTEC Sg 1 bigWig 1.000000 51337.000000 RPTEC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 534 0 0 0 127 127 127 0 0 0 regulation 0 longLabel RPTEC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel RPTEC Sg 1\ subGroups view=zRSig cellType=t3RPTEC rep=rep1 treatment=None\ track wgEncodeUwDnaseRptecRawRep1\ type bigWig 1.000000 51337.000000\ wgEncodeHaibTfbsA549Ctcfsc5916Pcr1xEtoh02PkRep1 A549 CTCF EtOH 1 broadPeak A549 CTCF 5916 EtOH PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 535 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 CTCF 5916 EtOH PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 CTCF EtOH 1\ subGroups view=Peaks factor=CTCFSC5916 cellType=t2A549 protocol=PCR1X treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Ctcfsc5916Pcr1xEtoh02PkRep1\ type broadPeak\ wgEncodeAwgTfbsUtaFibroblCtcfUniPk Fibrobl CTCF narrowPeak Fibrobl TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 535 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Fibrobl TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel Fibrobl CTCF\ subGroups tier=a30 cellType=FIBROBL factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaFibroblCtcfUniPk\ wgEncodeSydhTfbsHepg2Mxi1StdSig HEPG Mxi1 Std bigWig 1.000000 15508.000000 HEPG2 Mxi1 Standard ChIP-seq Signal from ENCODE/SYDH 2 535 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 Mxi1 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG Mxi1 Std\ subGroups view=Signal factor=MXI1 cellType=t2HEPG2 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHepg2Mxi1StdSig\ type bigWig 1.000000 15508.000000\ wgEncodeCshlLongRnaSeqHmncpbCellTotalContigsV2 hMNPB cel tot C bed 6 + hMNC-PB whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 535 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMNC-PB whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel hMNPB cel tot C\ subGroups view=Contigs cellType=t3HMNCPB localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHmncpbCellTotalContigsV2\ type bed 6 +\ encTfChipPkENCFF517YCC K562 CUX1 narrowPeak Transcription Factor ChIP-seq Peaks of CUX1 in K562 from ENCODE 3 (ENCFF517YCC) 1 535 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of CUX1 in K562 from ENCODE 3 (ENCFF517YCC)\ parent encTfChipPk off\ shortLabel K562 CUX1\ subGroups cellType=K562 factor=CUX1\ track encTfChipPkENCFF517YCC\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_forward 0 535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%209%29.CNhs13284.12512-133B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12512-133B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_forward 1 535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%209%29.CNhs13284.12512-133B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12512-133B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k4me3StdRawRep1 NHEK H3K4M3 Sg 1 bigWig 1.000000 1796.000000 NHEK H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 535 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel NHEK H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3NHEK rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhekH3k4me3StdRawRep1\ type bigWig 1.000000 1796.000000\ wgEncodeBroadHistoneNhlfH3k9acStdSig NHLF H3K9ac bigWig 0.040000 8105.680176 NHLF H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 535 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHLF H3K9ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHLF H3K9ac\ subGroups view=Signal factor=H3K09AC cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k9acStdSig\ type bigWig 0.040000 8105.680176\ wgEncodeUwDnaseRptecHotspotsRep2 RPTEC Ht 2 broadPeak RPTEC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 535 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPTEC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel RPTEC Ht 2\ subGroups view=Hot cellType=t3RPTEC rep=rep2 treatment=None\ track wgEncodeUwDnaseRptecHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549Ctcfsc5916Pcr1xEtoh02RawRep1 A549 CTCF EtOH 1 bigWig 0.142594 132.649002 A549 CTCF 5916 EtOH PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 536 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 CTCF 5916 EtOH PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 CTCF EtOH 1\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t2A549 protocol=PCR1X treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Ctcfsc5916Pcr1xEtoh02RawRep1\ type bigWig 0.142594 132.649002\ wgEncodeAwgTfbsUtaGlioblaCtcfUniPk Gliobla CTCF narrowPeak Gliobla TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 536 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Gliobla TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel Gliobla CTCF\ subGroups tier=a30 cellType=GLIOBLA factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaGlioblaCtcfUniPk\ wgEncodeSydhTfbsHepg2Mafksc477IggrabPk HEPG MafK IgR narrowPeak HEPG2 MafK SC477 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 536 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 MafK SC477 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG MafK IgR\ subGroups view=Peaks factor=MafKsc477 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Mafksc477IggrabPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmncpbCellTotalJunctionsV2 hMNPB cel tot J bed 6 + hMNC-PB whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 536 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMNC-PB whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel hMNPB cel tot J\ subGroups view=Junctions cellType=t3HMNCPB localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHmncpbCellTotalJunctionsV2\ type bed 6 +\ encTfChipPkENCFF526HLP K562 DACH1 narrowPeak Transcription Factor ChIP-seq Peaks of DACH1 in K562 from ENCODE 3 (ENCFF526HLP) 1 536 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of DACH1 in K562 from ENCODE 3 (ENCFF526HLP)\ parent encTfChipPk off\ shortLabel K562 DACH1\ subGroups cellType=K562 factor=DACH1\ track encTfChipPkENCFF526HLP\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_ctss_rev LymphaticEndothelialCellsToVegfc_02hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_reverse 0 536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%209%29.CNhs13284.12512-133B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12512-133B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_tpm_rev LymphaticEndothelialCellsToVegfc_02hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_reverse 1 536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%209%29.CNhs13284.12512-133B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12512-133B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k4me3StdHotspotsRep2 NHEK H3K4M3 Ht 2 broadPeak NHEK H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 536 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel NHEK H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3NHEK rep=rep2 treatment=zNone\ track wgEncodeUwHistoneNhekH3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneNhlfH3k09me3Pk NHLF H3K9m3 broadPeak NHLF H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 536 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHLF H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHLF H3K9m3\ subGroups view=Peaks factor=H3K09ME3 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k09me3Pk\ type broadPeak\ wgEncodeUwDnaseRptecPkRep2 RPTEC Pk 2 narrowPeak RPTEC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 536 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPTEC DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel RPTEC Pk 2\ subGroups view=Peaks cellType=t3RPTEC rep=rep2 treatment=None\ track wgEncodeUwDnaseRptecPkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549Ctcfsc5916Pcr1xEtoh02PkRep2 A549 CTCF EtOH 2 broadPeak A549 CTCF 5916 EtOH PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 537 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 CTCF 5916 EtOH PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 CTCF EtOH 2\ subGroups view=Peaks factor=CTCFSC5916 cellType=t2A549 protocol=PCR1X treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Ctcfsc5916Pcr1xEtoh02PkRep2\ type broadPeak\ wgEncodeAwgTfbsUtaGlioblaPol2UniPk Gliobla POLR2A narrowPeak Gliobla TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis 1 537 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Gliobla TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel Gliobla POLR2A\ subGroups tier=a30 cellType=GLIOBLA factor=POLR2A lab=UT-A\ track wgEncodeAwgTfbsUtaGlioblaPol2UniPk\ wgEncodeSydhTfbsHepg2Mafksc477IggrabSig HEPG MafK IgR bigWig 1.000000 40786.000000 HEPG2 MafK SC477 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 537 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 MafK SC477 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG MafK IgR\ subGroups view=Signal factor=MafKsc477 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Mafksc477IggrabSig\ type bigWig 1.000000 40786.000000\ wgEncodeCshlLongRnaSeqHmncpbCellTotalMinusSignalRep1V2 hMNPB cel tot - 1 bigWig 1.000000 4900756.000000 hMNC-PB whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 537 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMNC-PB whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel hMNPB cel tot - 1\ subGroups view=MinusSignal cellType=t3HMNCPB localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmncpbCellTotalMinusSignalRep1V2\ type bigWig 1.000000 4900756.000000\ encTfChipPkENCFF786WZD K562 DEAF1 narrowPeak Transcription Factor ChIP-seq Peaks of DEAF1 in K562 from ENCODE 3 (ENCFF786WZD) 1 537 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of DEAF1 in K562 from ENCODE 3 (ENCFF786WZD)\ parent encTfChipPk off\ shortLabel K562 DEAF1\ subGroups cellType=K562 factor=DEAF1\ track encTfChipPkENCFF786WZD\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_forward 0 537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%2010%29.CNhs13108.12269-130B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12269-130B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_forward 1 537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%2010%29.CNhs13108.12269-130B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12269-130B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k4me3StdPkRep2 NHEK H3K4M3 Pk 2 narrowPeak NHEK H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 537 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel NHEK H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3NHEK rep=rep2 treatment=zNone\ track wgEncodeUwHistoneNhekH3k4me3StdPkRep2\ type narrowPeak\ wgEncodeBroadHistoneNhlfH3k09me3Sig NHLF H3K9m3 bigWig 0.040000 92296.843750 NHLF H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 537 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHLF H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHLF H3K9m3\ subGroups view=Signal factor=H3K09ME3 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k09me3Sig\ type bigWig 0.040000 92296.843750\ wgEncodeUwDnaseRptecRawRep2 RPTEC Sg 2 bigWig 1.000000 38920.000000 RPTEC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 537 0 0 0 127 127 127 0 0 0 regulation 0 longLabel RPTEC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel RPTEC Sg 2\ subGroups view=zRSig cellType=t3RPTEC rep=rep2 treatment=None\ track wgEncodeUwDnaseRptecRawRep2\ type bigWig 1.000000 38920.000000\ wgEncodeHaibTfbsA549Ctcfsc5916Pcr1xEtoh02RawRep2 A549 CTCF EtOH 2 bigWig 0.226265 121.503998 A549 CTCF 5916 EtOH PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 538 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 CTCF 5916 EtOH PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 CTCF EtOH 2\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t2A549 protocol=PCR1X treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Ctcfsc5916Pcr1xEtoh02RawRep2\ type bigWig 0.226265 121.503998\ wgEncodeAwgTfbsUwGm06990CtcfUniPk GM06990 CTCF narrowPeak GM06990 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 538 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM06990 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM06990 CTCF\ subGroups tier=a30 cellType=GM06990 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwGm06990CtcfUniPk\ wgEncodeSydhTfbsHepg2Nrf1IggrabPk HEPG Nrf1 IgR narrowPeak HEPG2 Nrf1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 538 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 Nrf1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG Nrf1 IgR\ subGroups view=Peaks factor=NRF1 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Nrf1IggrabPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmncpbCellTotalPlusSignalRep1V2 hMNPB cel tot + 1 bigWig 1.000000 6668862.000000 hMNC-PB whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 538 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMNC-PB whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel hMNPB cel tot + 1\ subGroups view=PlusSignal cellType=t3HMNCPB localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmncpbCellTotalPlusSignalRep1V2\ type bigWig 1.000000 6668862.000000\ encTfChipPkENCFF034PQD K562 DNMT1 narrowPeak Transcription Factor ChIP-seq Peaks of DNMT1 in K562 from ENCODE 3 (ENCFF034PQD) 1 538 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of DNMT1 in K562 from ENCODE 3 (ENCFF034PQD)\ parent encTfChipPk off\ shortLabel K562 DNMT1\ subGroups cellType=K562 factor=DNMT1\ track encTfChipPkENCFF034PQD\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_ctss_rev LymphaticEndothelialCellsToVegfc_03hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_reverse 0 538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%2010%29.CNhs13108.12269-130B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12269-130B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_tpm_rev LymphaticEndothelialCellsToVegfc_03hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_reverse 1 538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%2010%29.CNhs13108.12269-130B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12269-130B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k4me3StdRawRep2 NHEK H3K4M3 Sg 2 bigWig 1.000000 1956.000000 NHEK H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 538 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel NHEK H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3NHEK rep=rep2 treatment=zNone\ track wgEncodeUwHistoneNhekH3k4me3StdRawRep2\ type bigWig 1.000000 1956.000000\ wgEncodeBroadHistoneNhlfH3k27acStdPk NHLF H3K27ac broadPeak NHLF H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 538 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHLF H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHLF H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k27acStdPk\ type broadPeak\ wgEncodeUwDnaseSaecHotspotsRep1 SAEC Ht 1 broadPeak SAEC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 538 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel SAEC Ht 1\ subGroups view=Hot cellType=t3SAEC rep=rep1 treatment=None\ track wgEncodeUwDnaseSaecHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549E2f6V0422111PkRep1 A549 E2F6 V11 1 broadPeak A549 E2F6 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 539 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 E2F6 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 E2F6 V11 1\ subGroups view=Peaks factor=E2F6 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsA549E2f6V0422111PkRep1\ type broadPeak\ wgEncodeAwgTfbsSydhGm08714Znf274UcdUniPk GM08714 ZNF274 narrowPeak GM08714 TFBS Uniform Peaks of ZNF274 from ENCODE/USC/Analysis 1 539 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM08714 TFBS Uniform Peaks of ZNF274 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM08714 ZNF274\ subGroups tier=a30 cellType=GM08714 factor=ZNF274 lab=USC\ track wgEncodeAwgTfbsSydhGm08714Znf274UcdUniPk\ wgEncodeSydhTfbsHepg2Nrf1IggrabSig HEPG Nrf1 IgR bigWig 0.000000 9370.299805 HEPG2 Nrf1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 539 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 Nrf1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG Nrf1 IgR\ subGroups view=Signal factor=NRF1 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Nrf1IggrabSig\ type bigWig 0.000000 9370.299805\ wgEncodeCshlLongRnaSeqHmscat010260412CellTotalAlnRep1 hMSAT cel tot A 1 bam hMSC-AT whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 539 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-AT whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel hMSAT cel tot A 1\ subGroups view=Alignments cellType=t3HMSCAT localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmscat010260412CellTotalAlnRep1\ type bam\ encTfChipPkENCFF774QKS K562 DPF2 1 narrowPeak Transcription Factor ChIP-seq Peaks of DPF2 in K562 from ENCODE 3 (ENCFF774QKS) 1 539 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of DPF2 in K562 from ENCODE 3 (ENCFF774QKS)\ parent encTfChipPk off\ shortLabel K562 DPF2 1\ subGroups cellType=K562 factor=DPF2\ track encTfChipPkENCFF774QKS\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_forward 0 539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%2010%29.CNhs13166.12391-131F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12391-131F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_forward 1 539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%2010%29.CNhs13166.12391-131F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12391-131F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k27me3StdHotspotsRep1 NHEK H3K27M3 Ht 1 broadPeak NHEK H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 539 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel NHEK H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t3NHEK rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhekH3k27me3StdHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneNhlfH3k27acStdSig NHLF H3K27ac bigWig 0.040000 7016.200195 NHLF H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 539 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHLF H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHLF H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k27acStdSig\ type bigWig 0.040000 7016.200195\ wgEncodeUwDnaseSaecPkRep1 SAEC Pk 1 narrowPeak SAEC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 539 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel SAEC Pk 1\ subGroups view=Peaks cellType=t3SAEC rep=rep1 treatment=None\ track wgEncodeUwDnaseSaecPkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549E2f6V0422111RawRep1 A549 E2F6 V11 1 bigWig 1.000000 4164.000000 A549 E2F6 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 540 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 E2F6 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 E2F6 V11 1\ subGroups view=RawSignal factor=E2F6 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsA549E2f6V0422111RawRep1\ type bigWig 1.000000 4164.000000\ wgEncodeAwgTfbsSydhGm10847Pol2IggmusUniPk GM10847 POLR2A narrowPeak GM10847 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis 1 540 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM10847 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM10847 POLR2A\ subGroups tier=a30 cellType=GM10847 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhGm10847Pol2IggmusUniPk\ wgEncodeSydhTfbsHepg2P300sc582IggrabPk HEPG p300 IgR narrowPeak HEPG2 p300 SC584 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 540 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 p300 SC584 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG p300 IgR\ subGroups view=Peaks factor=P300SC584 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2P300sc582IggrabPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmscat906160112CellTotalAlnRep2 hMSAT cel tot A 2 bam hMSC-AT whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 540 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-AT whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel hMSAT cel tot A 2\ subGroups view=Alignments cellType=t3HMSCAT localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHmscat906160112CellTotalAlnRep2\ type bam\ encTfChipPkENCFF823SYE K562 DPF2 2 narrowPeak Transcription Factor ChIP-seq Peaks of DPF2 in K562 from ENCODE 3 (ENCFF823SYE) 1 540 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of DPF2 in K562 from ENCODE 3 (ENCFF823SYE)\ parent encTfChipPk off\ shortLabel K562 DPF2 2\ subGroups cellType=K562 factor=DPF2\ track encTfChipPkENCFF823SYE\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_ctss_rev LymphaticEndothelialCellsToVegfc_03hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_reverse 0 540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%2010%29.CNhs13166.12391-131F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12391-131F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_tpm_rev LymphaticEndothelialCellsToVegfc_03hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_reverse 1 540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%2010%29.CNhs13166.12391-131F6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12391-131F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k27me3StdPkRep1 NHEK H3K27M3 Pk 1 narrowPeak NHEK H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 540 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel NHEK H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t3NHEK rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhekH3k27me3StdPkRep1\ type narrowPeak\ wgEncodeBroadHistoneNhlfH3k27me3StdPk NHLF H3K27m3 broadPeak NHLF H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 540 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHLF H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHLF H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k27me3StdPk\ type broadPeak\ wgEncodeUwDnaseSaecRawRep1 SAEC Sg 1 bigWig 1.000000 9812.000000 SAEC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 540 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SAEC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel SAEC Sg 1\ subGroups view=zRSig cellType=t3SAEC rep=rep1 treatment=None\ track wgEncodeUwDnaseSaecRawRep1\ type bigWig 1.000000 9812.000000\ wgEncodeHaibTfbsA549E2f6V0422111PkRep2 A549 E2F6 V11 2 broadPeak A549 E2F6 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 541 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 E2F6 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 E2F6 V11 2\ subGroups view=Peaks factor=E2F6 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsA549E2f6V0422111PkRep2\ type broadPeak\ wgEncodeAwgTfbsSydhGm10847NfkbTnfaIggrabUniPk GM10847+TNFa RELA narrowPeak GM10847 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis 1 541 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM10847 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM10847+TNFa RELA\ subGroups tier=a30 cellType=GM10847 factor=RELA lab=Stanford\ track wgEncodeAwgTfbsSydhGm10847NfkbTnfaIggrabUniPk\ wgEncodeSydhTfbsHepg2P300sc582IggrabSig HEPG p300 IgR bigWig 1.000000 15243.000000 HEPG2 p300 SC584 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 541 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 p300 SC584 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG p300 IgR\ subGroups view=Signal factor=P300SC584 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2P300sc582IggrabSig\ type bigWig 1.000000 15243.000000\ wgEncodeCshlLongRnaSeqHmscatCellTotalContigs hMSAT cel tot C bed 6 + hMSC-AT whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 541 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-AT whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel hMSAT cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3HMSCAT localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqHmscatCellTotalContigs\ type bed 6 +\ encTfChipPkENCFF106DAY K562 E2F1 1 narrowPeak Transcription Factor ChIP-seq Peaks of E2F1 in K562 from ENCODE 3 (ENCFF106DAY) 1 541 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of E2F1 in K562 from ENCODE 3 (ENCFF106DAY)\ parent encTfChipPk off\ shortLabel K562 E2F1 1\ subGroups cellType=K562 factor=E2F1\ track encTfChipPkENCFF106DAY\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_forward 0 541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%2010%29.CNhs13285.12513-133B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12513-133B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_forward 1 541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%2010%29.CNhs13285.12513-133B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12513-133B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k27me3StdRawRep1 NHEK H3K27M3 Sg 1 bigWig 1.000000 9934.000000 NHEK H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 541 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel NHEK H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t3NHEK rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhekH3k27me3StdRawRep1\ type bigWig 1.000000 9934.000000\ wgEncodeBroadHistoneNhlfH3k27me3StdSig NHLF H3K27m3 bigWig 0.040000 9652.440430 NHLF H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 541 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHLF H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHLF H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k27me3StdSig\ type bigWig 0.040000 9652.440430\ wgEncodeUwDnaseSaecHotspotsRep2 SAEC Ht 2 broadPeak SAEC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 541 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel SAEC Ht 2\ subGroups view=Hot cellType=t3SAEC rep=rep2 treatment=None\ track wgEncodeUwDnaseSaecHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549E2f6V0422111RawRep2 A549 E2F6 V11 2 bigWig 1.000000 2610.000000 A549 E2F6 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 542 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 E2F6 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 E2F6 V11 2\ subGroups view=RawSignal factor=E2F6 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsA549E2f6V0422111RawRep2\ type bigWig 1.000000 2610.000000\ wgEncodeAwgTfbsUwGm12801CtcfUniPk GM12801 CTCF narrowPeak GM12801 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 542 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12801 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12801 CTCF\ subGroups tier=a30 cellType=GM12801 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwGm12801CtcfUniPk\ wgEncodeSydhTfbsHepg2Pgc1aForsklnStdPk HEPG frsk PGC1 Sd narrowPeak HEPG2 PGC1A Standard forskolin ChIP-seq Peaks from ENCODE/SYDH 3 542 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 PGC1A Standard forskolin ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG frsk PGC1 Sd\ subGroups view=Peaks factor=PGC1A cellType=t2HEPG2 control=STD treatment=FORSKLN\ track wgEncodeSydhTfbsHepg2Pgc1aForsklnStdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmscatCellTotalJunctions hMSAT cel tot J bed 6 + hMSC-AT whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 542 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-AT whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel hMSAT cel tot J\ subGroups view=Junctions cellType=t3HMSCAT localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHmscatCellTotalJunctions\ type bed 6 +\ encTfChipPkENCFF998YJY K562 E2F1 2 narrowPeak Transcription Factor ChIP-seq Peaks of E2F1 in K562 from ENCODE 3 (ENCFF998YJY) 1 542 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of E2F1 in K562 from ENCODE 3 (ENCFF998YJY)\ parent encTfChipPk off\ shortLabel K562 E2F1 2\ subGroups cellType=K562 factor=E2F1\ track encTfChipPkENCFF998YJY\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_ctss_rev LymphaticEndothelialCellsToVegfc_03hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_reverse 0 542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%2010%29.CNhs13285.12513-133B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12513-133B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_tpm_rev LymphaticEndothelialCellsToVegfc_03hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_reverse 1 542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%2010%29.CNhs13285.12513-133B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12513-133B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k27me3StdHotspotsRep2 NHEK H3K27M3 Ht 2 broadPeak NHEK H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 542 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel NHEK H3K27M3 Ht 2\ subGroups view=Hot factor=H3K27ME3 cellType=t3NHEK rep=rep2 treatment=zNone\ track wgEncodeUwHistoneNhekH3k27me3StdHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneNhlfH3k36me3StdPk NHLF H3K36m3 broadPeak NHLF H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 542 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHLF H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHLF H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k36me3StdPk\ type broadPeak\ wgEncodeUwDnaseSaecPkRep2 SAEC Pk 2 narrowPeak SAEC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 542 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel SAEC Pk 2\ subGroups view=Peaks cellType=t3SAEC rep=rep2 treatment=None\ track wgEncodeUwDnaseSaecPkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549Elf1V0422111Etoh02PkRep1 A549 ELF1 EtOH 1 broadPeak A549 ELF1 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 543 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 ELF1 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 ELF1 EtOH 1\ subGroups view=Peaks factor=ELF1SC631 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Elf1V0422111Etoh02PkRep1\ type broadPeak\ wgEncodeAwgTfbsUwGm12864CtcfUniPk GM12864 CTCF narrowPeak GM12864 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 543 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12864 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12864 CTCF\ subGroups tier=a30 cellType=GM12864 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwGm12864CtcfUniPk\ wgEncodeSydhTfbsHepg2Pgc1aForsklnStdSig HEPG frsk PGC1 Sd bigWig 0.000000 9847.599609 HEPG2 PGC1A Standard forskolin ChIP-seq Signal from ENCODE/SYDH 2 543 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 PGC1A Standard forskolin ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG frsk PGC1 Sd\ subGroups view=Signal factor=PGC1A cellType=t2HEPG2 control=STD treatment=FORSKLN\ track wgEncodeSydhTfbsHepg2Pgc1aForsklnStdSig\ type bigWig 0.000000 9847.599609\ wgEncodeCshlLongRnaSeqHmscat010260412CellTotalMinusRep1 hMSAT cel tot - 1 bigWig 1.000000 4727843.000000 hMSC-AT whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 543 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-AT whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel hMSAT cel tot - 1\ subGroups view=MinusSignal cellType=t3HMSCAT localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmscat010260412CellTotalMinusRep1\ type bigWig 1.000000 4727843.000000\ encTfChipPkENCFF917COW K562 E2F6 narrowPeak Transcription Factor ChIP-seq Peaks of E2F6 in K562 from ENCODE 3 (ENCFF917COW) 1 543 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of E2F6 in K562 from ENCODE 3 (ENCFF917COW)\ parent encTfChipPk off\ shortLabel K562 E2F6\ subGroups cellType=K562 factor=E2F6\ track encTfChipPkENCFF917COW\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_forward 0 543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%2011%29.CNhs13109.12270-130B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12270-130B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_forward 1 543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%2011%29.CNhs13109.12270-130B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12270-130B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k27me3StdPkRep2 NHEK H3K27M3 Pk 2 narrowPeak NHEK H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 543 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel NHEK H3K27M3 Pk 2\ subGroups view=Peaks factor=H3K27ME3 cellType=t3NHEK rep=rep2 treatment=zNone\ track wgEncodeUwHistoneNhekH3k27me3StdPkRep2\ type narrowPeak\ wgEncodeBroadHistoneNhlfH3k36me3StdSig NHLF H3K36m3 bigWig 0.040000 15557.639648 NHLF H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 543 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHLF H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHLF H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k36me3StdSig\ type bigWig 0.040000 15557.639648\ wgEncodeUwDnaseSaecRawRep2 SAEC Sg 2 bigWig 1.000000 8779.000000 SAEC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 543 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SAEC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel SAEC Sg 2\ subGroups view=zRSig cellType=t3SAEC rep=rep2 treatment=None\ track wgEncodeUwDnaseSaecRawRep2\ type bigWig 1.000000 8779.000000\ wgEncodeHaibTfbsA549Elf1V0422111Etoh02RawRep1 A549 ELF1 EtOH 1 bigWig 0.131247 293.501007 A549 ELF1 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 544 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 ELF1 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 ELF1 EtOH 1\ subGroups view=RawSignal factor=ELF1SC631 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Elf1V0422111Etoh02RawRep1\ type bigWig 0.131247 293.501007\ wgEncodeAwgTfbsUwGm12865CtcfUniPk GM12865 CTCF narrowPeak GM12865 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 544 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12865 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12865 CTCF\ subGroups tier=a30 cellType=GM12865 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwGm12865CtcfUniPk\ wgEncodeSydhTfbsHepg2Pol2IggrabPk HEPG Pol2 IgR narrowPeak HEPG2 Pol2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 544 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 Pol2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG Pol2 IgR\ subGroups view=Peaks factor=POL2 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Pol2IggrabPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmscat906160112CellTotalMinusRep2 hMSAT cel tot - 2 bigWig 1.000000 1308002.000000 hMSC-AT whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 544 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-AT whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel hMSAT cel tot - 2\ subGroups view=MinusSignal cellType=t3HMSCAT localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHmscat906160112CellTotalMinusRep2\ type bigWig 1.000000 1308002.000000\ encTfChipPkENCFF310AGG K562 E2F7 narrowPeak Transcription Factor ChIP-seq Peaks of E2F7 in K562 from ENCODE 3 (ENCFF310AGG) 1 544 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of E2F7 in K562 from ENCODE 3 (ENCFF310AGG)\ parent encTfChipPk off\ shortLabel K562 E2F7\ subGroups cellType=K562 factor=E2F7\ track encTfChipPkENCFF310AGG\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_ctss_rev LymphaticEndothelialCellsToVegfc_03hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_reverse 0 544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%2011%29.CNhs13109.12270-130B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12270-130B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_tpm_rev LymphaticEndothelialCellsToVegfc_03hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_reverse 1 544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%2011%29.CNhs13109.12270-130B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12270-130B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k27me3StdRawRep2 NHEK H3K27M3 Sg 2 bigWig 1.000000 3767.000000 NHEK H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 544 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel NHEK H3K27M3 Sg 2\ subGroups view=zRSig factor=H3K27ME3 cellType=t3NHEK rep=rep2 treatment=zNone\ track wgEncodeUwHistoneNhekH3k27me3StdRawRep2\ type bigWig 1.000000 3767.000000\ wgEncodeBroadHistoneNhlfH3k79me2Pk NHLF H3K79m2 broadPeak NHLF H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 544 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHLF H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHLF H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k79me2Pk\ type broadPeak\ wgEncodeUwDnaseSknmcHotspotsRep1 SKNMC Ht 1 broadPeak SK-N-MC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 544 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-MC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel SKNMC Ht 1\ subGroups view=Hot cellType=t3SKNMC rep=rep1 treatment=None\ track wgEncodeUwDnaseSknmcHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549Elf1V0422111Etoh02PkRep2 A549 ELF1 EtOH 2 broadPeak A549 ELF1 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 545 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 ELF1 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 ELF1 EtOH 2\ subGroups view=Peaks factor=ELF1SC631 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Elf1V0422111Etoh02PkRep2\ type broadPeak\ wgEncodeAwgTfbsUwGm12872CtcfUniPk GM12872 CTCF narrowPeak GM12872 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 545 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12872 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12872 CTCF\ subGroups tier=a30 cellType=GM12872 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwGm12872CtcfUniPk\ wgEncodeSydhTfbsHepg2Pol2IggrabSig HEPG Pol2 IgR bigWig 0.000000 40209.199219 HEPG2 Pol2 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 545 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 Pol2 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG Pol2 IgR\ subGroups view=Signal factor=POL2 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Pol2IggrabSig\ type bigWig 0.000000 40209.199219\ wgEncodeCshlLongRnaSeqHmscat010260412CellTotalPlusRep1 hMSAT cel tot + 1 bigWig 1.000000 4730259.000000 hMSC-AT whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 545 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-AT whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel hMSAT cel tot + 1\ subGroups view=PlusSignal cellType=t3HMSCAT localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmscat010260412CellTotalPlusRep1\ type bigWig 1.000000 4730259.000000\ encTfChipPkENCFF925DJG K562 E2F8 narrowPeak Transcription Factor ChIP-seq Peaks of E2F8 in K562 from ENCODE 3 (ENCFF925DJG) 1 545 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of E2F8 in K562 from ENCODE 3 (ENCFF925DJG)\ parent encTfChipPk off\ shortLabel K562 E2F8\ subGroups cellType=K562 factor=E2F8\ track encTfChipPkENCFF925DJG\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_forward 0 545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%2011%29.CNhs13168.12392-131F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12392-131F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_forward 1 545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%2011%29.CNhs13168.12392-131F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12392-131F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k36me3StdHotspotsRep1 NHEK H3K36M3 Ht 1 broadPeak NHEK H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 545 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel NHEK H3K36M3 Ht 1\ subGroups view=Hot factor=H3K36ME3 cellType=t3NHEK rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhekH3k36me3StdHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneNhlfH3k79me2Sig NHLF H3K79m2 bigWig 0.040000 7095.279785 NHLF H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 545 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHLF H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHLF H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH3k79me2Sig\ type bigWig 0.040000 7095.279785\ wgEncodeUwDnaseSknmcPkRep1 SKNMC Pk 1 narrowPeak SK-N-MC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 545 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-MC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel SKNMC Pk 1\ subGroups view=Peaks cellType=t3SKNMC rep=rep1 treatment=None\ track wgEncodeUwDnaseSknmcPkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549Elf1V0422111Etoh02RawRep2 A549 ELF1 EtOH 2 bigWig 0.147413 159.095001 A549 ELF1 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 546 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 ELF1 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 ELF1 EtOH 2\ subGroups view=RawSignal factor=ELF1SC631 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Elf1V0422111Etoh02RawRep2\ type bigWig 0.147413 159.095001\ wgEncodeAwgTfbsUwGm12873CtcfUniPk GM12873 CTCF narrowPeak GM12873 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 546 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12873 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12873 CTCF\ subGroups tier=a30 cellType=GM12873 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwGm12873CtcfUniPk\ wgEncodeSydhTfbsHepg2Pol2ForsklnStdPk HEPG frsk Pol2 Sd narrowPeak HEPG2 Pol2 Standard forskolin ChIP-seq Peaks from ENCODE/SYDH 3 546 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 Pol2 Standard forskolin ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG frsk Pol2 Sd\ subGroups view=Peaks factor=POL2 cellType=t2HEPG2 control=STD treatment=FORSKLN\ track wgEncodeSydhTfbsHepg2Pol2ForsklnStdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmscat906160112CellTotalPlusRep2 hMSAT cel tot + 2 bigWig 1.000000 2735253.000000 hMSC-AT whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 546 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-AT whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel hMSAT cel tot + 2\ subGroups view=PlusSignal cellType=t3HMSCAT localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHmscat906160112CellTotalPlusRep2\ type bigWig 1.000000 2735253.000000\ encTfChipPkENCFF083YCQ K562 E4F1 narrowPeak Transcription Factor ChIP-seq Peaks of E4F1 in K562 from ENCODE 3 (ENCFF083YCQ) 1 546 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of E4F1 in K562 from ENCODE 3 (ENCFF083YCQ)\ parent encTfChipPk off\ shortLabel K562 E4F1\ subGroups cellType=K562 factor=E4F1\ track encTfChipPkENCFF083YCQ\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_ctss_rev LymphaticEndothelialCellsToVegfc_03hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_reverse 0 546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%2011%29.CNhs13168.12392-131F7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12392-131F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_tpm_rev LymphaticEndothelialCellsToVegfc_03hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_reverse 1 546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%2011%29.CNhs13168.12392-131F7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12392-131F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k36me3StdPkRep1 NHEK H3K36M3 Pk 1 narrowPeak NHEK H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 546 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel NHEK H3K36M3 Pk 1\ subGroups view=Peaks factor=H3K36ME3 cellType=t3NHEK rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhekH3k36me3StdPkRep1\ type narrowPeak\ wgEncodeBroadHistoneNhlfH4k20me1StdPk NHLF H4K20m1 broadPeak NHLF H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 546 0 0 0 127 127 127 1 0 0 regulation 1 longLabel NHLF H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel NHLF H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH4k20me1StdPk\ type broadPeak\ wgEncodeUwDnaseSknmcRawRep1 SKNMC Sg 1 bigWig 1.000000 31890.000000 SK-N-MC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 546 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-MC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel SKNMC Sg 1\ subGroups view=zRSig cellType=t3SKNMC rep=rep1 treatment=None\ track wgEncodeUwDnaseSknmcRawRep1\ type bigWig 1.000000 31890.000000\ wgEncodeHaibTfbsA549Ets1V0422111Etoh02PkRep1 A549 ETS1 EtOH 1 broadPeak A549 ETS1 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 547 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 ETS1 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 ETS1 EtOH 1\ subGroups view=Peaks factor=ETS1 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Ets1V0422111Etoh02PkRep1\ type broadPeak\ wgEncodeAwgTfbsUwGm12874CtcfUniPk GM12874 CTCF narrowPeak GM12874 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 547 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12874 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12874 CTCF\ subGroups tier=a30 cellType=GM12874 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwGm12874CtcfUniPk\ wgEncodeSydhTfbsHepg2Pol2ForsklnStdSig HEPG frsk Pol2 Sd bigWig 0.000000 24841.599609 HEPG2 Pol2 Standard forskolin ChIP-seq Signal from ENCODE/SYDH 2 547 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 Pol2 Standard forskolin ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG frsk Pol2 Sd\ subGroups view=Signal factor=POL2 cellType=t2HEPG2 control=STD treatment=FORSKLN\ track wgEncodeSydhTfbsHepg2Pol2ForsklnStdSig\ type bigWig 0.000000 24841.599609\ wgEncodeCshlLongRnaSeqHmscbm005110511CellTotalAlnRep1 hMSBM cel tot A 1 bam hMSC-BM whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 547 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-BM whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel hMSBM cel tot A 1\ subGroups view=Alignments cellType=t3HMSCBM localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmscbm005110511CellTotalAlnRep1\ type bam\ encTfChipPkENCFF004WYV K562 EGR1 1 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF004WYV) 1 547 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF004WYV)\ parent encTfChipPk off\ shortLabel K562 EGR1 1\ subGroups cellType=K562 factor=EGR1\ track encTfChipPkENCFF004WYV\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_forward 0 547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%2011%29.CNhs13286.12514-133B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12514-133B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_forward 1 547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%2011%29.CNhs13286.12514-133B3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12514-133B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k36me3StdRawRep1 NHEK H3K36M3 Sg 1 bigWig 1.000000 4056.000000 NHEK H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 547 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel NHEK H3K36M3 Sg 1\ subGroups view=zRSig factor=H3K36ME3 cellType=t3NHEK rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhekH3k36me3StdRawRep1\ type bigWig 1.000000 4056.000000\ wgEncodeBroadHistoneNhlfH4k20me1StdSig NHLF H4K20m1 bigWig 0.040000 7711.879883 NHLF H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 547 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHLF H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHLF H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfH4k20me1StdSig\ type bigWig 0.040000 7711.879883\ wgEncodeUwDnaseSknmcHotspotsRep2 SKNMC Ht 2 broadPeak SK-N-MC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 547 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-MC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel SKNMC Ht 2\ subGroups view=Hot cellType=t3SKNMC rep=rep2 treatment=None\ track wgEncodeUwDnaseSknmcHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549Ets1V0422111Etoh02RawRep1 A549 ETS1 EtOH 1 bigWig 0.218626 175.393005 A549 ETS1 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 548 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 ETS1 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 ETS1 EtOH 1\ subGroups view=RawSignal factor=ETS1 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Ets1V0422111Etoh02RawRep1\ type bigWig 0.218626 175.393005\ wgEncodeAwgTfbsUwGm12875CtcfUniPk GM12875 CTCF narrowPeak GM12875 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 548 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12875 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12875 CTCF\ subGroups tier=a30 cellType=GM12875 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwGm12875CtcfUniPk\ wgEncodeSydhTfbsHepg2Pol2PravastStdPk HEPG prav Pol2 Sd narrowPeak HEPG2 Pol2 Standard pravastatin ChIP-seq Peaks from ENCODE/SYDH 3 548 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 Pol2 Standard pravastatin ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG prav Pol2 Sd\ subGroups view=Peaks factor=POL2 cellType=t2HEPG2 control=STD treatment=PRAVAST\ track wgEncodeSydhTfbsHepg2Pol2PravastStdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmscbm005060211CellTotalAlnRep2 hMSBM cel tot A 2 bam hMSC-BM whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 548 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-BM whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel hMSBM cel tot A 2\ subGroups view=Alignments cellType=t3HMSCBM localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHmscbm005060211CellTotalAlnRep2\ type bam\ encTfChipPkENCFF182QDI K562 EGR1 2 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF182QDI) 1 548 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF182QDI)\ parent encTfChipPk off\ shortLabel K562 EGR1 2\ subGroups cellType=K562 factor=EGR1\ track encTfChipPkENCFF182QDI\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_ctss_rev LymphaticEndothelialCellsToVegfc_03hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_reverse 0 548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%2011%29.CNhs13286.12514-133B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12514-133B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_tpm_rev LymphaticEndothelialCellsToVegfc_03hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_reverse 1 548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%2011%29.CNhs13286.12514-133B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12514-133B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k36me3StdHotspotsRep2 NHEK H3K36M3 Ht 2 broadPeak NHEK H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 548 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel NHEK H3K36M3 Ht 2\ subGroups view=Hot factor=H3K36ME3 cellType=t3NHEK rep=rep2 treatment=zNone\ track wgEncodeUwHistoneNhekH3k36me3StdHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneNhlfControlStdSig NHLF Input bigWig 0.040000 13342.759766 NHLF Input Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 548 0 0 0 127 127 127 1 0 0 regulation 0 longLabel NHLF Input Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel NHLF Input\ subGroups view=Signal factor=zCTRL cellType=t3NHLF treatment=zNONE\ track wgEncodeBroadHistoneNhlfControlStdSig\ type bigWig 0.040000 13342.759766\ wgEncodeUwDnaseSknmcPkRep2 SKNMC Pk 2 narrowPeak SK-N-MC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 548 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-MC DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel SKNMC Pk 2\ subGroups view=Peaks cellType=t3SKNMC rep=rep2 treatment=None\ track wgEncodeUwDnaseSknmcPkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549Ets1V0422111Etoh02PkRep2 A549 ETS1 EtOH 2 broadPeak A549 ETS1 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 549 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 ETS1 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 ETS1 EtOH 2\ subGroups view=Peaks factor=ETS1 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Ets1V0422111Etoh02PkRep2\ type broadPeak\ wgEncodeAwgTfbsUtaGm12891CtcfUniPk GM12891 CTCF narrowPeak GM12891 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 549 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12891 CTCF\ subGroups tier=a30 cellType=GM12891 factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaGm12891CtcfUniPk\ wgEncodeSydhTfbsHepg2Pol2PravastStdSig HEPG prav Pol2 Sd bigWig 0.000000 48733.699219 HEPG2 Pol2 Standard pravastatin ChIP-seq Signal from ENCODE/SYDH 2 549 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 Pol2 Standard pravastatin ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG prav Pol2 Sd\ subGroups view=Signal factor=POL2 cellType=t2HEPG2 control=STD treatment=PRAVAST\ track wgEncodeSydhTfbsHepg2Pol2PravastStdSig\ type bigWig 0.000000 48733.699219\ wgEncodeCshlLongRnaSeqHmscbmCellTotalContigs hMSBM cel tot C bed 6 + hMSC-BM whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 549 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-BM whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel hMSBM cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3HMSCBM localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqHmscbmCellTotalContigs\ type bed 6 +\ encTfChipPkENCFF558JBX K562 EGR1 3 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF558JBX) 1 549 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF558JBX)\ parent encTfChipPk off\ shortLabel K562 EGR1 3\ subGroups cellType=K562 factor=EGR1\ track encTfChipPkENCFF558JBX\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_ctss_fwd LymphaticEndothelialCellsToVegfc_04hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_forward 0 549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep1%20%28MM%20XIX%20-%2012%29.CNhs13110.12271-130B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12271-130B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_tpm_fwd LymphaticEndothelialCellsToVegfc_04hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_forward 1 549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep1%20%28MM%20XIX%20-%2012%29.CNhs13110.12271-130B3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12271-130B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k36me3StdPkRep2 NHEK H3K36M3 Pk 2 narrowPeak NHEK H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 549 179 0 134 217 127 194 0 0 0 regulation 1 color 179,0,134\ longLabel NHEK H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel NHEK H3K36M3 Pk 2\ subGroups view=Peaks factor=H3K36ME3 cellType=t3NHEK rep=rep2 treatment=zNone\ track wgEncodeUwHistoneNhekH3k36me3StdPkRep2\ type narrowPeak\ wgEncodeBroadHistoneOsteoblCtcfStdPk Osteobl CTCF broadPeak Osteoblasts CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 549 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Osteoblasts CTCF Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Osteobl CTCF\ subGroups view=Peaks factor=CTCF cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoblCtcfStdPk\ type broadPeak\ wgEncodeUwDnaseSknmcRawRep2 SKNMC Sg 2 bigWig 1.000000 38369.000000 SK-N-MC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 549 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-MC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel SKNMC Sg 2\ subGroups view=zRSig cellType=t3SKNMC rep=rep2 treatment=None\ track wgEncodeUwDnaseSknmcRawRep2\ type bigWig 1.000000 38369.000000\ wgEncodeHaibTfbsA549Ets1V0422111Etoh02RawRep2 A549 ETS1 EtOH 2 bigWig 0.129819 184.408005 A549 ETS1 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 550 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 ETS1 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 ETS1 EtOH 2\ subGroups view=RawSignal factor=ETS1 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Ets1V0422111Etoh02RawRep2\ type bigWig 0.129819 184.408005\ wgEncodeAwgTfbsHaibGm12891Pax5c20V0416101UniPk GM12891 PAX5 narrowPeak GM12891 TFBS Uniform Peaks of PAX5-C20 from ENCODE/HudsonAlpha/Analysis 1 550 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 TFBS Uniform Peaks of PAX5-C20 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12891 PAX5\ subGroups tier=a30 cellType=GM12891 factor=PAX5 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12891Pax5c20V0416101UniPk\ wgEncodeSydhTfbsHepg2Pol2s2IggrabPk HEPG PolS IgR narrowPeak HEPG2 Pol2 S2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 550 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 Pol2 S2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG PolS IgR\ subGroups view=Peaks factor=POL2S2 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Pol2s2IggrabPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmscbmCellTotalJunctions hMSBM cel tot J bed 6 + hMSC-BM whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 550 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-BM whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel hMSBM cel tot J\ subGroups view=Junctions cellType=t3HMSCBM localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHmscbmCellTotalJunctions\ type bed 6 +\ encTfChipPkENCFF806BDC K562 EHMT2 narrowPeak Transcription Factor ChIP-seq Peaks of EHMT2 in K562 from ENCODE 3 (ENCFF806BDC) 1 550 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of EHMT2 in K562 from ENCODE 3 (ENCFF806BDC)\ parent encTfChipPk off\ shortLabel K562 EHMT2\ subGroups cellType=K562 factor=EHMT2\ track encTfChipPkENCFF806BDC\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_ctss_rev LymphaticEndothelialCellsToVegfc_04hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_reverse 0 550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep1%20%28MM%20XIX%20-%2012%29.CNhs13110.12271-130B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12271-130B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_tpm_rev LymphaticEndothelialCellsToVegfc_04hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_reverse 1 550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep1%20%28MM%20XIX%20-%2012%29.CNhs13110.12271-130B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12271-130B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekH3k36me3StdRawRep2 NHEK H3K36M3 Sg 2 bigWig 1.000000 4145.000000 NHEK H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 550 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel NHEK H3K36M3 Sg 2\ subGroups view=zRSig factor=H3K36ME3 cellType=t3NHEK rep=rep2 treatment=zNone\ track wgEncodeUwHistoneNhekH3k36me3StdRawRep2\ type bigWig 1.000000 4145.000000\ wgEncodeBroadHistoneOsteoblCtcfStdSig Osteobl CTCF bigWig 0.040000 13777.519531 Osteoblasts CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 550 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Osteoblasts CTCF Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Osteobl CTCF\ subGroups view=Signal factor=CTCF cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoblCtcfStdSig\ type bigWig 0.040000 13777.519531\ wgEncodeUwDnaseSknshraHotspotsRep1 SKNSHRA Ht 1 broadPeak SK-N-SH RA DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 550 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH RA DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel SKNSHRA Ht 1\ subGroups view=Hot cellType=t3SKNSHRA rep=rep1 treatment=None\ track wgEncodeUwDnaseSknshraHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549Fosl2V0422111Etoh02PkRep1 A549 FOSL2 EtOH 1 broadPeak A549 FOSL2 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 551 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 FOSL2 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 FOSL2 EtOH 1\ subGroups view=Peaks factor=FOSL2 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Fosl2V0422111Etoh02PkRep1\ type broadPeak\ wgEncodeAwgTfbsHaibGm12891Pol24h8Pcr1xUniPk GM12891 POLR2A h1 narrowPeak GM12891 TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis 1 551 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12891 POLR2A h1\ subGroups tier=a30 cellType=GM12891 factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12891Pol24h8Pcr1xUniPk\ wgEncodeSydhTfbsHepg2Pol2s2IggrabSig HEPG PolS IgR bigWig 1.000000 7379.000000 HEPG2 Pol2 S2 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 551 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 Pol2 S2 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG PolS IgR\ subGroups view=Signal factor=POL2S2 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Pol2s2IggrabSig\ type bigWig 1.000000 7379.000000\ wgEncodeCshlLongRnaSeqHmscbm005110511CellTotalMinusRep1 hMSBM cel tot - 1 bigWig 1.000000 6498245.000000 hMSC-BM whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 551 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-BM whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel hMSBM cel tot - 1\ subGroups view=MinusSignal cellType=t3HMSCBM localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmscbm005110511CellTotalMinusRep1\ type bigWig 1.000000 6498245.000000\ encTfChipPkENCFF392MUM K562 ELF1 narrowPeak Transcription Factor ChIP-seq Peaks of ELF1 in K562 from ENCODE 3 (ENCFF392MUM) 1 551 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ELF1 in K562 from ENCODE 3 (ENCFF392MUM)\ parent encTfChipPk off\ shortLabel K562 ELF1\ subGroups cellType=K562 factor=ELF1\ track encTfChipPkENCFF392MUM\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_ctss_fwd LymphaticEndothelialCellsToVegfc_04hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_forward 0 551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep2%20%28MM%20XIV%20-%2012%29.CNhs13169.12393-131F8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12393-131F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_tpm_fwd LymphaticEndothelialCellsToVegfc_04hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_forward 1 551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep2%20%28MM%20XIV%20-%2012%29.CNhs13169.12393-131F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12393-131F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhekInputStdRawRep1 NHEK In Sg 1 bigWig 1.000000 11841.000000 NHEK Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 551 179 0 134 217 127 194 0 0 0 regulation 0 color 179,0,134\ longLabel NHEK Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel NHEK In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3NHEK rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhekInputStdRawRep1\ type bigWig 1.000000 11841.000000\ wgEncodeBroadHistoneOsteoblH2azStdPk Osteobl H2A.Z broadPeak Osteoblasts H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 551 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Osteoblasts H2A.Z Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Osteobl H2A.Z\ subGroups view=Peaks factor=H2AZ cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoblH2azStdPk\ type broadPeak\ wgEncodeUwDnaseSknshraPkRep1 SKNSHRA Pk 1 narrowPeak SK-N-SH RA DNaseI HS Peaks Rep 1 from ENCODE/UW 1 551 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH RA DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel SKNSHRA Pk 1\ subGroups view=Peaks cellType=t3SKNSHRA rep=rep1 treatment=None\ track wgEncodeUwDnaseSknshraPkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549Fosl2V0422111Etoh02RawRep1 A549 FOSL2 EtOH 1 bigWig 0.136940 214.380005 A549 FOSL2 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 552 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 FOSL2 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 FOSL2 EtOH 1\ subGroups view=RawSignal factor=FOSL2 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Fosl2V0422111Etoh02RawRep1\ type bigWig 0.136940 214.380005\ wgEncodeAwgTfbsHaibGm12891Pol2Pcr1xUniPk GM12891 POLR2A h2 narrowPeak GM12891 TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis 1 552 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12891 POLR2A h2\ subGroups tier=a30 cellType=GM12891 factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12891Pol2Pcr1xUniPk\ wgEncodeSydhTfbsHepg2Rad21IggrabPk HEPG Rad2 IgR narrowPeak HEPG2 Rad21 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 552 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 Rad21 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG Rad2 IgR\ subGroups view=Peaks factor=RAD21 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Rad21IggrabPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmscbm005060211CellTotalMinusRep2 hMSBM cel tot - 2 bigWig 1.000000 4436744.000000 hMSC-BM whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 552 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-BM whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel hMSBM cel tot - 2\ subGroups view=MinusSignal cellType=t3HMSCBM localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHmscbm005060211CellTotalMinusRep2\ type bigWig 1.000000 4436744.000000\ encTfChipPkENCFF502KHR K562 ELF4 narrowPeak Transcription Factor ChIP-seq Peaks of ELF4 in K562 from ENCODE 3 (ENCFF502KHR) 1 552 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ELF4 in K562 from ENCODE 3 (ENCFF502KHR)\ parent encTfChipPk off\ shortLabel K562 ELF4\ subGroups cellType=K562 factor=ELF4\ track encTfChipPkENCFF502KHR\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_ctss_rev LymphaticEndothelialCellsToVegfc_04hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_reverse 0 552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep2%20%28MM%20XIV%20-%2012%29.CNhs13169.12393-131F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12393-131F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_tpm_rev LymphaticEndothelialCellsToVegfc_04hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_reverse 1 552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep2%20%28MM%20XIV%20-%2012%29.CNhs13169.12393-131F8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12393-131F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhlfH3k04me3StdHotspotsRep1 NHLF H3K4M3 Ht 1 broadPeak NHLF H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 552 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHLF H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel NHLF H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3NHLF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhlfH3k04me3StdHotspotsRep1\ type broadPeak\ wgEncodeBroadHistoneOsteoblH2azStdSig Osteobl H2A.Z bigWig 0.040000 56248.921875 Osteoblasts H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 552 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Osteoblasts H2A.Z Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Osteobl H2A.Z\ subGroups view=Signal factor=H2AZ cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoblH2azStdSig\ type bigWig 0.040000 56248.921875\ wgEncodeUwDnaseSknshraRawRep1 SKNSHRA Sg 1 bigWig 1.000000 4202.000000 SK-N-SH RA DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 552 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH RA DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel SKNSHRA Sg 1\ subGroups view=zRSig cellType=t3SKNSHRA rep=rep1 treatment=None\ track wgEncodeUwDnaseSknshraRawRep1\ type bigWig 1.000000 4202.000000\ wgEncodeHaibTfbsA549Fosl2V0422111Etoh02PkRep2 A549 FOSL2 EtOH 2 broadPeak A549 FOSL2 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 553 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 FOSL2 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 FOSL2 EtOH 2\ subGroups view=Peaks factor=FOSL2 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Fosl2V0422111Etoh02PkRep2\ type broadPeak\ wgEncodeAwgTfbsSydhGm12891Pol2IggmusUniPk GM12891 POLR2A s narrowPeak GM12891 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis 1 553 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12891 POLR2A s\ subGroups tier=a30 cellType=GM12891 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhGm12891Pol2IggmusUniPk\ wgEncodeSydhTfbsHepg2Rad21IggrabSig HEPG Rad2 IgR bigWig 0.000000 7884.399902 HEPG2 Rad21 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 553 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 Rad21 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG Rad2 IgR\ subGroups view=Signal factor=RAD21 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Rad21IggrabSig\ type bigWig 0.000000 7884.399902\ wgEncodeCshlLongRnaSeqHmscbm005110511CellTotalPlusRep1 hMSBM cel tot + 1 bigWig 1.000000 6189653.000000 hMSC-BM whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 553 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-BM whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel hMSBM cel tot + 1\ subGroups view=PlusSignal cellType=t3HMSCBM localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmscbm005110511CellTotalPlusRep1\ type bigWig 1.000000 6189653.000000\ encTfChipPkENCFF019PEL K562 ELK1 narrowPeak Transcription Factor ChIP-seq Peaks of ELK1 in K562 from ENCODE 3 (ENCFF019PEL) 1 553 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ELK1 in K562 from ENCODE 3 (ENCFF019PEL)\ parent encTfChipPk off\ shortLabel K562 ELK1\ subGroups cellType=K562 factor=ELK1\ track encTfChipPkENCFF019PEL\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_ctss_fwd LymphaticEndothelialCellsToVegfc_04hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_forward 0 553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep3%20%28MM%20XXII%20-%2012%29.CNhs13287.12515-133B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12515-133B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_tpm_fwd LymphaticEndothelialCellsToVegfc_04hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_forward 1 553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep3%20%28MM%20XXII%20-%2012%29.CNhs13287.12515-133B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12515-133B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhlfH3k04me3StdPkRep1 NHLF H3K4M3 Pk 1 narrowPeak NHLF H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 553 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHLF H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel NHLF H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3NHLF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhlfH3k04me3StdPkRep1\ type narrowPeak\ wgEncodeBroadHistoneOsteoblH3k4me1StdPk Osteobl H3K4m1 broadPeak Osteoblasts H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 553 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Osteoblasts H3K4me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Osteobl H3K4m1\ subGroups view=Peaks factor=H3K04ME1 cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoblH3k4me1StdPk\ type broadPeak\ wgEncodeUwDnaseSknshraHotspotsRep2 SKNSHRA Ht 2 broadPeak SK-N-SH RA DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 553 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH RA DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel SKNSHRA Ht 2\ subGroups view=Hot cellType=t3SKNSHRA rep=rep2 treatment=None\ track wgEncodeUwDnaseSknshraHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549Fosl2V0422111Etoh02RawRep2 A549 FOSL2 EtOH 2 bigWig 0.148945 368.973999 A549 FOSL2 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 554 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 FOSL2 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 FOSL2 EtOH 2\ subGroups view=RawSignal factor=FOSL2 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Fosl2V0422111Etoh02RawRep2\ type bigWig 0.148945 368.973999\ wgEncodeAwgTfbsHaibGm12891Pou2f2Pcr1xUniPk GM12891 POU2F2 narrowPeak GM12891 TFBS Uniform Peaks of POU2F2 from ENCODE/HudsonAlpha/Analysis 1 554 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 TFBS Uniform Peaks of POU2F2 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12891 POU2F2\ subGroups tier=a30 cellType=GM12891 factor=POU2F2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12891Pou2f2Pcr1xUniPk\ wgEncodeSydhTfbsHepg2Rfx5200401194IggrabPk HEPG RFX5 IgR narrowPeak HEPG2 RFX5 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 554 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 RFX5 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG RFX5 IgR\ subGroups view=Peaks factor=RFX5200401194 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Rfx5200401194IggrabPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmscbm005060211CellTotalPlusRep2 hMSBM cel tot + 2 bigWig 1.000000 5251201.000000 hMSC-BM whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 554 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-BM whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel hMSBM cel tot + 2\ subGroups view=PlusSignal cellType=t3HMSCBM localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHmscbm005060211CellTotalPlusRep2\ type bigWig 1.000000 5251201.000000\ encTfChipPkENCFF549TYR K562 EP300 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in K562 from ENCODE 3 (ENCFF549TYR) 1 554 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in K562 from ENCODE 3 (ENCFF549TYR)\ parent encTfChipPk off\ shortLabel K562 EP300\ subGroups cellType=K562 factor=EP300\ track encTfChipPkENCFF549TYR\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_ctss_rev LymphaticEndothelialCellsToVegfc_04hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_reverse 0 554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep3%20%28MM%20XXII%20-%2012%29.CNhs13287.12515-133B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12515-133B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_tpm_rev LymphaticEndothelialCellsToVegfc_04hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_reverse 1 554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep3%20%28MM%20XXII%20-%2012%29.CNhs13287.12515-133B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12515-133B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhlfH3k04me3StdRawRep1 NHLF H3K4M3 Sg 1 bigWig 1.000000 3125.000000 NHLF H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 554 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHLF H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel NHLF H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3NHLF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhlfH3k04me3StdRawRep1\ type bigWig 1.000000 3125.000000\ wgEncodeBroadHistoneOsteoblH3k4me1StdSig Osteobl H3K4m1 bigWig 0.040000 12418.000000 Osteoblasts H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 554 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Osteoblasts H3K4me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Osteobl H3K4m1\ subGroups view=Signal factor=H3K04ME1 cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoblH3k4me1StdSig\ type bigWig 0.040000 12418.000000\ wgEncodeUwDnaseSknshraPkRep2 SKNSHRA Pk 2 narrowPeak SK-N-SH RA DNaseI HS Peaks Rep 2 from ENCODE/UW 1 554 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH RA DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel SKNSHRA Pk 2\ subGroups view=Peaks cellType=t3SKNSHRA rep=rep2 treatment=None\ track wgEncodeUwDnaseSknshraPkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549Foxa1V0416102Dex100nmPkRep1 A549 FOXA1 DEX 1 broadPeak A549 FOXA1 101058 DEX 100nM v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 555 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 FOXA1 101058 DEX 100nM v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 FOXA1 DEX 1\ subGroups view=Peaks factor=FOXA1SC101058 cellType=t2A549 protocol=V0416102 treatment=DEX100NM rep=rep1\ track wgEncodeHaibTfbsA549Foxa1V0416102Dex100nmPkRep1\ type broadPeak\ wgEncodeAwgTfbsSydhGm12891NfkbTnfaIggrabUniPk GM12891+TNFa RELA narrowPeak GM12891 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis 1 555 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12891+TNFa RELA\ subGroups tier=a30 cellType=GM12891 factor=RELA lab=Stanford\ track wgEncodeAwgTfbsSydhGm12891NfkbTnfaIggrabUniPk\ wgEncodeSydhTfbsHepg2Rfx5200401194IggrabSig HEPG RFX5 IgR bigWig 1.000000 21235.000000 HEPG2 RFX5 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 555 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 RFX5 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG RFX5 IgR\ subGroups view=Signal factor=RFX5200401194 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Rfx5200401194IggrabSig\ type bigWig 1.000000 21235.000000\ wgEncodeCshlLongRnaSeqHmscuc00525017CellTotalAlnRep1 hMSUC cel tot A 1 bam hMSC-UC whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 555 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-UC whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel hMSUC cel tot A 1\ subGroups view=Alignments cellType=t3HMSCUC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmscuc00525017CellTotalAlnRep1\ type bam\ encTfChipPkENCFF925ANU K562 EP400 narrowPeak Transcription Factor ChIP-seq Peaks of EP400 in K562 from ENCODE 3 (ENCFF925ANU) 1 555 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of EP400 in K562 from ENCODE 3 (ENCFF925ANU)\ parent encTfChipPk off\ shortLabel K562 EP400\ subGroups cellType=K562 factor=EP400\ track encTfChipPkENCFF925ANU\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_ctss_fwd LymphaticEndothelialCellsToVegfc_05hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_forward 0 555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep1%20%28MM%20XIX%20-%2013%29.CNhs13111.12272-130B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12272-130B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_tpm_fwd LymphaticEndothelialCellsToVegfc_05hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_forward 1 555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep1%20%28MM%20XIX%20-%2013%29.CNhs13111.12272-130B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12272-130B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhlfH3k04me3StdHotspotsRep2 NHLF H3K4M3 Ht 2 broadPeak NHLF H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 555 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHLF H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel NHLF H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3NHLF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneNhlfH3k04me3StdHotspotsRep2\ type broadPeak\ wgEncodeBroadHistoneOsteoblH3k4me2StdPk Osteobl H3K4m2 broadPeak Osteoblasts H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 555 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Osteoblasts H3K4me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Osteobl H3K4m2\ subGroups view=Peaks factor=H3K04ME2 cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoblH3k4me2StdPk\ type broadPeak\ wgEncodeUwDnaseSknshraRawRep2 SKNSHRA Sg 2 bigWig 1.000000 12022.000000 SK-N-SH RA DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 555 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH RA DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel SKNSHRA Sg 2\ subGroups view=zRSig cellType=t3SKNSHRA rep=rep2 treatment=None\ track wgEncodeUwDnaseSknshraRawRep2\ type bigWig 1.000000 12022.000000\ wgEncodeHaibTfbsA549Foxa1V0416102Dex100nmRawRep1 A549 FOXA1 DEX 1 bigWig 0.176500 288.842010 A549 FOXA1 101058 DEX 100nM v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 556 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 FOXA1 101058 DEX 100nM v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 FOXA1 DEX 1\ subGroups view=RawSignal factor=FOXA1SC101058 cellType=t2A549 protocol=V0416102 treatment=DEX100NM rep=rep1\ track wgEncodeHaibTfbsA549Foxa1V0416102Dex100nmRawRep1\ type bigWig 0.176500 288.842010\ wgEncodeAwgTfbsHaibGm12891Pu1Pcr1xUniPk GM12891 SPI1 narrowPeak GM12891 TFBS Uniform Peaks of PU.1 from ENCODE/HudsonAlpha/Analysis 1 556 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 TFBS Uniform Peaks of PU.1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12891 SPI1\ subGroups tier=a30 cellType=GM12891 factor=SPI1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12891Pu1Pcr1xUniPk\ wgEncodeSydhTfbsHepg2Smc3ab9263IggrabPk HEPG SMC3 IgR narrowPeak HEPG2 SMC3 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 556 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 SMC3 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG SMC3 IgR\ subGroups view=Peaks factor=SMC3ab9263 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Smc3ab9263IggrabPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmscuc00811017CellTotalAlnRep2 hMSUC cel tot A 2 bam hMSC-UC whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 556 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-UC whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel hMSUC cel tot A 2\ subGroups view=Alignments cellType=t3HMSCUC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHmscuc00811017CellTotalAlnRep2\ type bam\ encTfChipPkENCFF213EPU K562 ESRRA narrowPeak Transcription Factor ChIP-seq Peaks of ESRRA in K562 from ENCODE 3 (ENCFF213EPU) 1 556 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ESRRA in K562 from ENCODE 3 (ENCFF213EPU)\ parent encTfChipPk off\ shortLabel K562 ESRRA\ subGroups cellType=K562 factor=ESRRA\ track encTfChipPkENCFF213EPU\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_ctss_rev LymphaticEndothelialCellsToVegfc_05hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_reverse 0 556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep1%20%28MM%20XIX%20-%2013%29.CNhs13111.12272-130B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12272-130B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_tpm_rev LymphaticEndothelialCellsToVegfc_05hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_reverse 1 556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep1%20%28MM%20XIX%20-%2013%29.CNhs13111.12272-130B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12272-130B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhlfH3k04me3StdPkRep2 NHLF H3K4M3 Pk 2 narrowPeak NHLF H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 556 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHLF H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel NHLF H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3NHLF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneNhlfH3k04me3StdPkRep2\ type narrowPeak\ wgEncodeBroadHistoneOsteoblH3k4me2StdSig Osteobl H3K4m2 bigWig 0.040000 13407.240234 Osteoblasts H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 556 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Osteoblasts H3K4me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Osteobl H3K4m2\ subGroups view=Signal factor=H3K04ME2 cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoblH3k4me2StdSig\ type bigWig 0.040000 13407.240234\ wgEncodeUwDnaseSkmcHotspotsRep1 SkMC Ht 1 broadPeak SkMC DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 556 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SkMC DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel SkMC Ht 1\ subGroups view=Hot cellType=t3SKZMC rep=rep1 treatment=None\ track wgEncodeUwDnaseSkmcHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549Foxa1V0416102Dex100nmPkRep2 A549 FOXA1 DEX 2 broadPeak A549 FOXA1 101058 DEX 100nM v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 557 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 FOXA1 101058 DEX 100nM v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 FOXA1 DEX 2\ subGroups view=Peaks factor=FOXA1SC101058 cellType=t2A549 protocol=V0416102 treatment=DEX100NM rep=rep2\ track wgEncodeHaibTfbsA549Foxa1V0416102Dex100nmPkRep2\ type broadPeak\ wgEncodeAwgTfbsHaibGm12891Taf1Pcr1xUniPk GM12891 TAF1 narrowPeak GM12891 TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis 1 557 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12891 TAF1\ subGroups tier=a30 cellType=GM12891 factor=TAF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12891Taf1Pcr1xUniPk\ wgEncodeSydhTfbsHepg2Smc3ab9263IggrabSig HEPG SMC3 IgR bigWig 1.000000 11218.000000 HEPG2 SMC3 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 557 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 SMC3 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG SMC3 IgR\ subGroups view=Signal factor=SMC3ab9263 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Smc3ab9263IggrabSig\ type bigWig 1.000000 11218.000000\ wgEncodeCshlLongRnaSeqHmscucCellTotalContigs hMSUC cel tot C bed 6 + hMSC-UC whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 557 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-UC whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel hMSUC cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3HMSCUC localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqHmscucCellTotalContigs\ type bed 6 +\ encTfChipPkENCFF076YZO K562 ETS1 narrowPeak Transcription Factor ChIP-seq Peaks of ETS1 in K562 from ENCODE 3 (ENCFF076YZO) 1 557 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ETS1 in K562 from ENCODE 3 (ENCFF076YZO)\ parent encTfChipPk off\ shortLabel K562 ETS1\ subGroups cellType=K562 factor=ETS1\ track encTfChipPkENCFF076YZO\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_ctss_fwd LymphaticEndothelialCellsToVegfc_05hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_forward 0 557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep2%20%28MM%20XIV%20-%2013%29.CNhs13170.12394-131F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12394-131F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_tpm_fwd LymphaticEndothelialCellsToVegfc_05hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_forward 1 557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep2%20%28MM%20XIV%20-%2013%29.CNhs13170.12394-131F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12394-131F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhlfH3k04me3StdRawRep2 NHLF H3K4M3 Sg 2 bigWig 1.000000 6814.000000 NHLF H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 557 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHLF H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel NHLF H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3NHLF rep=rep2 treatment=zNone\ track wgEncodeUwHistoneNhlfH3k04me3StdRawRep2\ type bigWig 1.000000 6814.000000\ wgEncodeBroadHistoneOsteoH3k04me3Pk Osteobl H3K4m3 broadPeak Osteoblasts H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 557 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Osteoblasts H3K4me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Osteobl H3K4m3\ subGroups view=Peaks factor=H3K04ME3 cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoH3k04me3Pk\ type broadPeak\ wgEncodeUwDnaseSkmcPkRep1 SkMC Pk 1 narrowPeak SkMC DNaseI HS Peaks Rep 1 from ENCODE/UW 1 557 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SkMC DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel SkMC Pk 1\ subGroups view=Peaks cellType=t3SKZMC rep=rep1 treatment=None\ track wgEncodeUwDnaseSkmcPkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549Foxa1V0416102Dex100nmRawRep2 A549 FOXA1 DEX 2 bigWig 0.243970 255.070999 A549 FOXA1 101058 DEX 100nM v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 558 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 FOXA1 101058 DEX 100nM v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 FOXA1 DEX 2\ subGroups view=RawSignal factor=FOXA1SC101058 cellType=t2A549 protocol=V0416102 treatment=DEX100NM rep=rep2\ track wgEncodeHaibTfbsA549Foxa1V0416102Dex100nmRawRep2\ type bigWig 0.243970 255.070999\ wgEncodeAwgTfbsHaibGm12891Yy1sc281V0416101UniPk GM12891 YY1 narrowPeak GM12891 TFBS Uniform Peaks of YY1_(SC-281) from ENCODE/HudsonAlpha/Analysis 1 558 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 TFBS Uniform Peaks of YY1_(SC-281) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12891 YY1\ subGroups tier=a30 cellType=GM12891 factor=YY1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12891Yy1sc281V0416101UniPk\ wgEncodeSydhTfbsHepg2Srebp1InslnStdPk HEPG isln SRBP Sd narrowPeak HEPG2 SREBP1 Standard insulin ChIP-seq Peaks from ENCODE/SYDH 3 558 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 SREBP1 Standard insulin ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG isln SRBP Sd\ subGroups view=Peaks factor=SREBP1 cellType=t2HEPG2 control=STD treatment=INSLN\ track wgEncodeSydhTfbsHepg2Srebp1InslnStdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmscucCellTotalJunctions hMSUC cel tot J bed 6 + hMSC-UC whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 558 0 0 0 127 127 127 0 0 0 expression 1 longLabel hMSC-UC whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel hMSUC cel tot J\ subGroups view=Junctions cellType=t3HMSCUC localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHmscucCellTotalJunctions\ type bed 6 +\ encTfChipPkENCFF660VPM K562 ETV6 1 narrowPeak Transcription Factor ChIP-seq Peaks of ETV6 in K562 from ENCODE 3 (ENCFF660VPM) 1 558 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ETV6 in K562 from ENCODE 3 (ENCFF660VPM)\ parent encTfChipPk off\ shortLabel K562 ETV6 1\ subGroups cellType=K562 factor=ETV6\ track encTfChipPkENCFF660VPM\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_ctss_rev LymphaticEndothelialCellsToVegfc_05hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_reverse 0 558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep2%20%28MM%20XIV%20-%2013%29.CNhs13170.12394-131F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12394-131F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_tpm_rev LymphaticEndothelialCellsToVegfc_05hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_reverse 1 558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep2%20%28MM%20XIV%20-%2013%29.CNhs13170.12394-131F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12394-131F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneNhlfInputStdRawRep1 NHLF In Sg 1 bigWig 1.000000 29301.000000 NHLF Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 558 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NHLF Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel NHLF In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3NHLF rep=rep1 treatment=zNone\ track wgEncodeUwHistoneNhlfInputStdRawRep1\ type bigWig 1.000000 29301.000000\ wgEncodeBroadHistoneOsteoH3k04me3Sig Osteobl H3K4m3 bigWig 0.040000 34642.640625 Osteoblasts H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 558 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Osteoblasts H3K4me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Osteobl H3K4m3\ subGroups view=Signal factor=H3K04ME3 cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoH3k04me3Sig\ type bigWig 0.040000 34642.640625\ wgEncodeUwDnaseSkmcRawRep1 SkMC Sg 1 bigWig 1.000000 9371.000000 SkMC DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 558 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SkMC DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel SkMC Sg 1\ subGroups view=zRSig cellType=t3SKZMC rep=rep1 treatment=None\ track wgEncodeUwDnaseSkmcRawRep1\ type bigWig 1.000000 9371.000000\ wgEncodeHaibTfbsA549Foxa1V0416102Etoh02RawRep1 A549 FOXA1 EtOH 1 bigWig 0.179616 305.212006 A549 FOXA1 101058 EtOH v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 559 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 FOXA1 101058 EtOH v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 FOXA1 EtOH 1\ subGroups view=RawSignal factor=FOXA1SC101058 cellType=t2A549 protocol=V0416102 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Foxa1V0416102Etoh02RawRep1\ type bigWig 0.179616 305.212006\ wgEncodeAwgTfbsUtaGm12892CtcfUniPk GM12892 CTCF narrowPeak GM12892 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 559 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12892 CTCF\ subGroups tier=a30 cellType=GM12892 factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaGm12892CtcfUniPk\ wgEncodeSydhTfbsHepg2Srebp1InslnStdSig HEPG isln SRBP Sd bigWig 0.000000 6511.500000 HEPG2 SREBP1 Standard insulin ChIP-seq Signal from ENCODE/SYDH 2 559 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 SREBP1 Standard insulin ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG isln SRBP Sd\ subGroups view=Signal factor=SREBP1 cellType=t2HEPG2 control=STD treatment=INSLN\ track wgEncodeSydhTfbsHepg2Srebp1InslnStdSig\ type bigWig 0.000000 6511.500000\ wgEncodeCshlLongRnaSeqHmscuc00525017CellTotalMinusRep1 hMSUC cel tot - 1 bigWig 1.000000 8409200.000000 hMSC-UC whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 559 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-UC whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel hMSUC cel tot - 1\ subGroups view=MinusSignal cellType=t3HMSCUC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmscuc00525017CellTotalMinusRep1\ type bigWig 1.000000 8409200.000000\ encTfChipPkENCFF545VNY K562 ETV6 2 narrowPeak Transcription Factor ChIP-seq Peaks of ETV6 in K562 from ENCODE 3 (ENCFF545VNY) 1 559 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ETV6 in K562 from ENCODE 3 (ENCFF545VNY)\ parent encTfChipPk off\ shortLabel K562 ETV6 2\ subGroups cellType=K562 factor=ETV6\ track encTfChipPkENCFF545VNY\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_ctss_fwd LymphaticEndothelialCellsToVegfc_05hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_forward 0 559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep3%20%28MM%20XXII%20-%2013%29.CNhs13288.12516-133B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12516-133B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_tpm_fwd LymphaticEndothelialCellsToVegfc_05hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_forward 1 559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep3%20%28MM%20XXII%20-%2013%29.CNhs13288.12516-133B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12516-133B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneOsteoblH3k9me3StdPk Osteobl H3K9m3 broadPeak Osteoblasts H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 559 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Osteoblasts H3K9me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Osteobl H3K9m3\ subGroups view=Peaks factor=H3K09ME3 cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoblH3k9me3StdPk\ type broadPeak\ wgEncodeUwHistonePanc1H3k04me3StdHotspotsRep1 PANC1 H3K4M3 Ht 1 broadPeak PANC-1 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 559 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel PANC1 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3PANC1 rep=rep1 treatment=zNone\ track wgEncodeUwHistonePanc1H3k04me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseSkmcHotspotsRep2 SkMC Ht 2 broadPeak SkMC DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 559 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SkMC DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel SkMC Ht 2\ subGroups view=Hot cellType=t3SKZMC rep=rep2 treatment=None\ track wgEncodeUwDnaseSkmcHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549Foxa1V0416102Etoh02RawRep2 A549 FOXA1 EtOH 2 bigWig 0.229060 259.983002 A549 FOXA1 101058 EtOH v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 560 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 FOXA1 101058 EtOH v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 FOXA1 EtOH 2\ subGroups view=RawSignal factor=FOXA1SC101058 cellType=t2A549 protocol=V0416102 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Foxa1V0416102Etoh02RawRep2\ type bigWig 0.229060 259.983002\ wgEncodeAwgTfbsHaibGm12892Pax5c20V0416101UniPk GM12892 PAX5 narrowPeak GM12892 TFBS Uniform Peaks of PAX5-C20 from ENCODE/HudsonAlpha/Analysis 1 560 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 TFBS Uniform Peaks of PAX5-C20 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12892 PAX5\ subGroups tier=a30 cellType=GM12892 factor=PAX5 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12892Pax5c20V0416101UniPk\ wgEncodeSydhTfbsHepg2Srebp1PravastStdPk HEPG prav SRBP Sd narrowPeak HEPG2 SREBP1 Standard pravastatin ChIP-seq Peaks from ENCODE/SYDH 3 560 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 SREBP1 Standard pravastatin ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG prav SRBP Sd\ subGroups view=Peaks factor=SREBP1 cellType=t2HEPG2 control=STD treatment=PRAVAST\ track wgEncodeSydhTfbsHepg2Srebp1PravastStdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmscuc00811017CellTotalMinusRep2 hMSUC cel tot - 2 bigWig 1.000000 5565364.000000 hMSC-UC whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 560 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-UC whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel hMSUC cel tot - 2\ subGroups view=MinusSignal cellType=t3HMSCUC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHmscuc00811017CellTotalMinusRep2\ type bigWig 1.000000 5565364.000000\ encTfChipPkENCFF820EVZ K562 EWSR1 narrowPeak Transcription Factor ChIP-seq Peaks of EWSR1 in K562 from ENCODE 3 (ENCFF820EVZ) 1 560 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of EWSR1 in K562 from ENCODE 3 (ENCFF820EVZ)\ parent encTfChipPk off\ shortLabel K562 EWSR1\ subGroups cellType=K562 factor=EWSR1\ track encTfChipPkENCFF820EVZ\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_ctss_rev LymphaticEndothelialCellsToVegfc_05hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_reverse 0 560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep3%20%28MM%20XXII%20-%2013%29.CNhs13288.12516-133B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12516-133B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_tpm_rev LymphaticEndothelialCellsToVegfc_05hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_reverse 1 560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep3%20%28MM%20XXII%20-%2013%29.CNhs13288.12516-133B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12516-133B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneOsteoblH3k9me3StdSig Osteobl H3K9m3 bigWig 0.040000 82158.562500 Osteoblasts H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 560 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Osteoblasts H3K9me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Osteobl H3K9m3\ subGroups view=Signal factor=H3K09ME3 cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoblH3k9me3StdSig\ type bigWig 0.040000 82158.562500\ wgEncodeUwHistonePanc1H3k04me3StdPkRep1 PANC1 H3K4M3 Pk 1 narrowPeak PANC-1 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 560 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel PANC1 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3PANC1 rep=rep1 treatment=zNone\ track wgEncodeUwHistonePanc1H3k04me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseSkmcPkRep2 SkMC Pk 2 narrowPeak SkMC DNaseI HS Peaks Rep 2 from ENCODE/UW 1 560 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SkMC DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel SkMC Pk 2\ subGroups view=Peaks cellType=t3SKZMC rep=rep2 treatment=None\ track wgEncodeUwDnaseSkmcPkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549Foxa2V0416102Etoh02PkRep1 A549 FOXA2 EtOH 1 broadPeak A549 FOXA2 EtOH v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 561 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 FOXA2 EtOH v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 FOXA2 EtOH 1\ subGroups view=Peaks factor=FOXA2SC6554 cellType=t2A549 protocol=V0416102 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Foxa2V0416102Etoh02PkRep1\ type broadPeak\ wgEncodeAwgTfbsHaibGm12892Pol24h8V0416102UniPk GM12892 POLR2A h1 narrowPeak GM12892 TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis 1 561 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12892 POLR2A h1\ subGroups tier=a30 cellType=GM12892 factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12892Pol24h8V0416102UniPk\ wgEncodeSydhTfbsHepg2Srebp1PravastStdSig HEPG prav SRBP Sd bigWig 0.000000 14243.299805 HEPG2 SREBP1 Standard pravastatin ChIP-seq Signal from ENCODE/SYDH 2 561 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 SREBP1 Standard pravastatin ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG prav SRBP Sd\ subGroups view=Signal factor=SREBP1 cellType=t2HEPG2 control=STD treatment=PRAVAST\ track wgEncodeSydhTfbsHepg2Srebp1PravastStdSig\ type bigWig 0.000000 14243.299805\ wgEncodeCshlLongRnaSeqHmscuc00525017CellTotalPlusRep1 hMSUC cel tot + 1 bigWig 1.000000 7778390.000000 hMSC-UC whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 561 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-UC whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel hMSUC cel tot + 1\ subGroups view=PlusSignal cellType=t3HMSCUC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHmscuc00525017CellTotalPlusRep1\ type bigWig 1.000000 7778390.000000\ encTfChipPkENCFF883WYX K562 FIP1L1 narrowPeak Transcription Factor ChIP-seq Peaks of FIP1L1 in K562 from ENCODE 3 (ENCFF883WYX) 1 561 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of FIP1L1 in K562 from ENCODE 3 (ENCFF883WYX)\ parent encTfChipPk off\ shortLabel K562 FIP1L1\ subGroups cellType=K562 factor=FIP1L1\ track encTfChipPkENCFF883WYX\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_ctss_fwd LymphaticEndothelialCellsToVegfc_06hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_forward 0 561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep1%20%28MM%20XIX%20-%2014%29.CNhs13112.12273-130B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12273-130B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_tpm_fwd LymphaticEndothelialCellsToVegfc_06hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_forward 1 561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep1%20%28MM%20XIX%20-%2014%29.CNhs13112.12273-130B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12273-130B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneOsteoblH3k27acStdPk Osteobl H3K27ac broadPeak Osteoblasts H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 561 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Osteoblasts H3K27ac Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Osteobl H3K27ac\ subGroups view=Peaks factor=H3K27AC cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoblH3k27acStdPk\ type broadPeak\ wgEncodeUwHistonePanc1H3k04me3StdRawRep1 PANC1 H3K4M3 Sg 1 bigWig 1.000000 4927.000000 PANC-1 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 561 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel PANC1 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3PANC1 rep=rep1 treatment=zNone\ track wgEncodeUwHistonePanc1H3k04me3StdRawRep1\ type bigWig 1.000000 4927.000000\ wgEncodeUwDnaseSkmcRawRep2 SkMC Sg 2 bigWig 1.000000 12057.000000 SkMC DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 561 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SkMC DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel SkMC Sg 2\ subGroups view=zRSig cellType=t3SKZMC rep=rep2 treatment=None\ track wgEncodeUwDnaseSkmcRawRep2\ type bigWig 1.000000 12057.000000\ wgEncodeHaibTfbsA549Foxa2V0416102Etoh02RawRep1 A549 FOXA2 EtOH 1 bigWig 0.159503 101.922997 A549 FOXA2 EtOH v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 562 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 FOXA2 EtOH v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 FOXA2 EtOH 1\ subGroups view=RawSignal factor=FOXA2SC6554 cellType=t2A549 protocol=V0416102 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Foxa2V0416102Etoh02RawRep1\ type bigWig 0.159503 101.922997\ wgEncodeAwgTfbsHaibGm12892Pol2V0416102UniPk GM12892 POLR2A h2 narrowPeak GM12892 TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis 1 562 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 TFBS Uniform Peaks of Pol2 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12892 POLR2A h2\ subGroups tier=a30 cellType=GM12892 factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12892Pol2V0416102UniPk\ wgEncodeSydhTfbsHepg2Srebp2PravastStdPk HEPG prav SBP2 Sd narrowPeak HEPG2 SREBP2 Standard pravastatin ChIP-seq Peaks from ENCODE/SYDH 3 562 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 SREBP2 Standard pravastatin ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG prav SBP2 Sd\ subGroups view=Peaks factor=SREBP2 cellType=t2HEPG2 control=STD treatment=PRAVAST\ track wgEncodeSydhTfbsHepg2Srebp2PravastStdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHmscuc00811017CellTotalPlusRep2 hMSUC cel tot + 2 bigWig 1.000000 4177131.000000 hMSC-UC whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 562 0 0 0 127 127 127 0 0 0 expression 0 longLabel hMSC-UC whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel hMSUC cel tot + 2\ subGroups view=PlusSignal cellType=t3HMSCUC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHmscuc00811017CellTotalPlusRep2\ type bigWig 1.000000 4177131.000000\ encTfChipPkENCFF473GCH K562 FOSL1 narrowPeak Transcription Factor ChIP-seq Peaks of FOSL1 in K562 from ENCODE 3 (ENCFF473GCH) 1 562 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of FOSL1 in K562 from ENCODE 3 (ENCFF473GCH)\ parent encTfChipPk off\ shortLabel K562 FOSL1\ subGroups cellType=K562 factor=FOSL1\ track encTfChipPkENCFF473GCH\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_ctss_rev LymphaticEndothelialCellsToVegfc_06hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_reverse 0 562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep1%20%28MM%20XIX%20-%2014%29.CNhs13112.12273-130B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12273-130B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_tpm_rev LymphaticEndothelialCellsToVegfc_06hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_reverse 1 562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep1%20%28MM%20XIX%20-%2014%29.CNhs13112.12273-130B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12273-130B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneOsteoblH3k27acStdSig Osteobl H3K27ac bigWig 0.040000 10683.360352 Osteoblasts H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 562 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Osteoblasts H3K27ac Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Osteobl H3K27ac\ subGroups view=Signal factor=H3K27AC cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoblH3k27acStdSig\ type bigWig 0.040000 10683.360352\ wgEncodeUwHistonePanc1H3k04me3StdHotspotsRep2 PANC1 H3K4M3 Ht 2 broadPeak PANC-1 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 562 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel PANC1 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3PANC1 rep=rep2 treatment=zNone\ track wgEncodeUwHistonePanc1H3k04me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseT47dHotspotsRep1 T-47D Ht 1 broadPeak T-47D DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 562 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel T-47D Ht 1\ subGroups view=Hot cellType=t3T47D rep=rep1 treatment=None\ track wgEncodeUwDnaseT47dHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549Foxa2V0416102Etoh02PkRep2 A549 FOXA2 EtOH 2 broadPeak A549 FOXA2 EtOH v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 563 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 FOXA2 EtOH v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 FOXA2 EtOH 2\ subGroups view=Peaks factor=FOXA2SC6554 cellType=t2A549 protocol=V0416102 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Foxa2V0416102Etoh02PkRep2\ type broadPeak\ wgEncodeAwgTfbsSydhGm12892Pol2IggmusUniPk GM12892 POLR2A s narrowPeak GM12892 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis 1 563 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12892 POLR2A s\ subGroups tier=a30 cellType=GM12892 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhGm12892Pol2IggmusUniPk\ wgEncodeSydhTfbsHepg2Srebp2PravastStdSig HEPG prav SBP2 Sd bigWig 0.000000 13475.799805 HEPG2 SREBP2 Standard pravastatin ChIP-seq Signal from ENCODE/SYDH 2 563 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 SREBP2 Standard pravastatin ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG prav SBP2 Sd\ subGroups view=Signal factor=SREBP2 cellType=t2HEPG2 control=STD treatment=PRAVAST\ track wgEncodeSydhTfbsHepg2Srebp2PravastStdSig\ type bigWig 0.000000 13475.799805\ wgEncodeCshlLongRnaSeqHob0091301CellTotalAlnRep1 HOB cel tot A 1 bam HOB whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 563 0 0 0 127 127 127 0 0 0 expression 1 longLabel HOB whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HOB cel tot A 1\ subGroups view=Alignments cellType=t3HOB localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHob0091301CellTotalAlnRep1\ type bam\ encTfChipPkENCFF809YFY K562 FOXA1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in K562 from ENCODE 3 (ENCFF809YFY) 1 563 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in K562 from ENCODE 3 (ENCFF809YFY)\ parent encTfChipPk off\ shortLabel K562 FOXA1\ subGroups cellType=K562 factor=FOXA1\ track encTfChipPkENCFF809YFY\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_ctss_fwd LymphaticEndothelialCellsToVegfc_06hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_forward 0 563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep2%20%28MM%20XIV%20-%2014%29.CNhs13171.12395-131G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12395-131G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_tpm_fwd LymphaticEndothelialCellsToVegfc_06hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_forward 1 563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep2%20%28MM%20XIV%20-%2014%29.CNhs13171.12395-131G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12395-131G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneOsteoH3k27me3Pk Osteobl H3K27m3 broadPeak Osteoblasts H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 563 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Osteoblasts H3K27me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Osteobl H3K27m3\ subGroups view=Peaks factor=H3K27ME3 cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoH3k27me3Pk\ type broadPeak\ wgEncodeUwHistonePanc1H3k04me3StdPkRep2 PANC1 H3K4M3 Pk 2 narrowPeak PANC-1 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 563 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel PANC1 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3PANC1 rep=rep2 treatment=zNone\ track wgEncodeUwHistonePanc1H3k04me3StdPkRep2\ type narrowPeak\ wgEncodeUwDnaseT47dPkRep1 T-47D Pk 1 narrowPeak T-47D DNaseI HS Peaks Rep 1 from ENCODE/UW 1 563 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel T-47D Pk 1\ subGroups view=Peaks cellType=t3T47D rep=rep1 treatment=None\ track wgEncodeUwDnaseT47dPkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549Foxa2V0416102Etoh02RawRep2 A549 FOXA2 EtOH 2 bigWig 0.285267 181.929001 A549 FOXA2 EtOH v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 564 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 FOXA2 EtOH v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 FOXA2 EtOH 2\ subGroups view=RawSignal factor=FOXA2SC6554 cellType=t2A549 protocol=V0416102 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Foxa2V0416102Etoh02RawRep2\ type bigWig 0.285267 181.929001\ wgEncodeAwgTfbsSydhGm12892NfkbTnfaIggrabUniPk GM12892+TNFa RELA narrowPeak GM12892 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis 1 564 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12892+TNFa RELA\ subGroups tier=a30 cellType=GM12892 factor=RELA lab=Stanford\ track wgEncodeAwgTfbsSydhGm12892NfkbTnfaIggrabUniPk\ wgEncodeSydhTfbsHepg2TbpIggrabPk HEPG TBP IgR narrowPeak HEPG2 TBP IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 564 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 TBP IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG TBP IgR\ subGroups view=Peaks factor=TBP cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2TbpIggrabPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHob00902021CellTotalAlnRep2 HOB cel tot A 2 bam HOB whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 564 0 0 0 127 127 127 0 0 0 expression 1 longLabel HOB whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HOB cel tot A 2\ subGroups view=Alignments cellType=t3HOB localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHob00902021CellTotalAlnRep2\ type bam\ encTfChipPkENCFF492GXZ K562 FOXK2 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXK2 in K562 from ENCODE 3 (ENCFF492GXZ) 1 564 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of FOXK2 in K562 from ENCODE 3 (ENCFF492GXZ)\ parent encTfChipPk off\ shortLabel K562 FOXK2 1\ subGroups cellType=K562 factor=FOXK2\ track encTfChipPkENCFF492GXZ\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_ctss_rev LymphaticEndothelialCellsToVegfc_06hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_reverse 0 564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep2%20%28MM%20XIV%20-%2014%29.CNhs13171.12395-131G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12395-131G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_tpm_rev LymphaticEndothelialCellsToVegfc_06hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_reverse 1 564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep2%20%28MM%20XIV%20-%2014%29.CNhs13171.12395-131G1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12395-131G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneOsteoH3k27me3Sig Osteobl H3K27m3 bigWig 0.040000 14695.000000 Osteoblasts H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 564 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Osteoblasts H3K27me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Osteobl H3K27m3\ subGroups view=Signal factor=H3K27ME3 cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoH3k27me3Sig\ type bigWig 0.040000 14695.000000\ wgEncodeUwHistonePanc1H3k04me3StdRawRep2 PANC1 H3K4M3 Sg 2 bigWig 1.000000 8928.000000 PANC-1 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 564 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel PANC1 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3PANC1 rep=rep2 treatment=zNone\ track wgEncodeUwHistonePanc1H3k04me3StdRawRep2\ type bigWig 1.000000 8928.000000\ wgEncodeUwDnaseT47dRawRep1 T-47D Sg 1 bigWig 1.000000 75983.000000 T-47D DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 564 0 0 0 127 127 127 0 0 0 regulation 0 longLabel T-47D DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel T-47D Sg 1\ subGroups view=zRSig cellType=t3T47D rep=rep1 treatment=None\ track wgEncodeUwDnaseT47dRawRep1\ type bigWig 1.000000 75983.000000\ wgEncodeHaibTfbsA549GabpV0422111Etoh02PkRep1 A549 GABP EtOH 1 broadPeak A549 GABP EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 565 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 GABP EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 GABP EtOH 1\ subGroups view=Peaks factor=GABP cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549GabpV0422111Etoh02PkRep1\ type broadPeak\ wgEncodeAwgTfbsHaibGm12892Taf1V0416102UniPk GM12892 TAF1 narrowPeak GM12892 TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis 1 565 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12892 TAF1\ subGroups tier=a30 cellType=GM12892 factor=TAF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12892Taf1V0416102UniPk\ wgEncodeSydhTfbsHepg2TbpIggrabSig HEPG TBP IgR bigWig 0.000000 20618.800781 HEPG2 TBP IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 565 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 TBP IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG TBP IgR\ subGroups view=Signal factor=TBP cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2TbpIggrabSig\ type bigWig 0.000000 20618.800781\ wgEncodeCshlLongRnaSeqHobCellTotalContigs HOB cel tot C bed 6 + HOB whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 565 0 0 0 127 127 127 0 0 0 expression 1 longLabel HOB whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HOB cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3HOB localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqHobCellTotalContigs\ type bed 6 +\ encTfChipPkENCFF248VHN K562 FOXK2 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXK2 in K562 from ENCODE 3 (ENCFF248VHN) 1 565 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of FOXK2 in K562 from ENCODE 3 (ENCFF248VHN)\ parent encTfChipPk off\ shortLabel K562 FOXK2 2\ subGroups cellType=K562 factor=FOXK2\ track encTfChipPkENCFF248VHN\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_ctss_fwd LymphaticEndothelialCellsToVegfc_06hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_forward 0 565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep3%20%28MM%20XXII%20-%2014%29.CNhs13289.12517-133B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12517-133B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_tpm_fwd LymphaticEndothelialCellsToVegfc_06hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_forward 1 565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep3%20%28MM%20XXII%20-%2014%29.CNhs13289.12517-133B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12517-133B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneOsteoblH3k36me3StdPk Osteobl H3K36m3 broadPeak Osteoblasts H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 565 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Osteoblasts H3K36me3 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Osteobl H3K36m3\ subGroups view=Peaks factor=H3K36ME3 cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoblH3k36me3StdPk\ type broadPeak\ wgEncodeUwHistonePanc1InputStdRawRep1 PANC1 In Sg 1 bigWig 1.000000 22326.000000 PANC-1 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 565 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel PANC1 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3PANC1 rep=rep1 treatment=zNone\ track wgEncodeUwHistonePanc1InputStdRawRep1\ type bigWig 1.000000 22326.000000\ wgEncodeUwDnaseT47dHotspotsRep2 T-47D Ht 2 broadPeak T-47D DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 565 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D DNaseI HS HotSpots Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel T-47D Ht 2\ subGroups view=Hot cellType=t3T47D rep=rep2 treatment=None\ track wgEncodeUwDnaseT47dHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549GabpV0422111Etoh02RawRep1 A549 GABP EtOH 1 bigWig 0.136330 226.477997 A549 GABP EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 566 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 GABP EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 GABP EtOH 1\ subGroups view=RawSignal factor=GABP cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549GabpV0422111Etoh02RawRep1\ type bigWig 0.136330 226.477997\ wgEncodeAwgTfbsHaibGm12892Yy1V0416101UniPk GM12892 YY1 narrowPeak GM12892 TFBS Uniform Peaks of YY1 from ENCODE/HudsonAlpha/Analysis 1 566 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 TFBS Uniform Peaks of YY1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM12892 YY1\ subGroups tier=a30 cellType=GM12892 factor=YY1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibGm12892Yy1V0416101UniPk\ wgEncodeSydhTfbsHepg2Tcf7l2UcdPk HEPG TCF7L2 UCD narrowPeak HEPG2 TCF7L2 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 566 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 TCF7L2 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG TCF7L2 UCD\ subGroups view=Peaks factor=TCF7L2 cellType=t2HEPG2 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHepg2Tcf7l2UcdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHobCellTotalJunctions HOB cel tot J bed 6 + HOB whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 566 0 0 0 127 127 127 0 0 0 expression 1 longLabel HOB whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HOB cel tot J\ subGroups view=Junctions cellType=t3HOB localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHobCellTotalJunctions\ type bed 6 +\ encTfChipPkENCFF699ZII K562 FOXM1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXM1 in K562 from ENCODE 3 (ENCFF699ZII) 1 566 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of FOXM1 in K562 from ENCODE 3 (ENCFF699ZII)\ parent encTfChipPk off\ shortLabel K562 FOXM1\ subGroups cellType=K562 factor=FOXM1\ track encTfChipPkENCFF699ZII\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_ctss_rev LymphaticEndothelialCellsToVegfc_06hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_reverse 0 566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep3%20%28MM%20XXII%20-%2014%29.CNhs13289.12517-133B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12517-133B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_tpm_rev LymphaticEndothelialCellsToVegfc_06hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_reverse 1 566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep3%20%28MM%20XXII%20-%2014%29.CNhs13289.12517-133B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12517-133B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneOsteoblH3k36me3StdSig Osteobl H3K36m3 bigWig 0.040000 31413.000000 Osteoblasts H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 566 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Osteoblasts H3K36me3 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Osteobl H3K36m3\ subGroups view=Signal factor=H3K36ME3 cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoblH3k36me3StdSig\ type bigWig 0.040000 31413.000000\ wgEncodeUwHistoneRptecH3k04me3StdHotspotsRep1 RPTEC H3K4M3 Ht 1 broadPeak RPTEC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 566 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPTEC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel RPTEC H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3RPTEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneRptecH3k04me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseT47dPkRep2 T-47D Pk 2 narrowPeak T-47D DNaseI HS Peaks Rep 2 from ENCODE/UW 1 566 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D DNaseI HS Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel T-47D Pk 2\ subGroups view=Peaks cellType=t3T47D rep=rep2 treatment=None\ track wgEncodeUwDnaseT47dPkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549GabpV0422111Etoh02PkRep2 A549 GABP EtOH 2 broadPeak A549 GABP EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 567 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 GABP EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 GABP EtOH 2\ subGroups view=Peaks factor=GABP cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549GabpV0422111Etoh02PkRep2\ type broadPeak\ wgEncodeAwgTfbsSydhGm15510Pol2IggmusUniPk GM15510 POLR2A narrowPeak GM15510 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis 1 567 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM15510 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM15510 POLR2A\ subGroups tier=a30 cellType=GM15510 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhGm15510Pol2IggmusUniPk\ wgEncodeSydhTfbsHepg2Tcf7l2UcdSig HEPG TCF7L2 UCD bigWig 1.000000 14667.000000 HEPG2 TCF7L2 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 567 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 TCF7L2 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG TCF7L2 UCD\ subGroups view=Signal factor=TCF7L2 cellType=t2HEPG2 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHepg2Tcf7l2UcdSig\ type bigWig 1.000000 14667.000000\ wgEncodeCshlLongRnaSeqHob0091301CellTotalMinusRep1 HOB cel tot - 1 bigWig 1.000000 17470382.000000 HOB whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 567 0 0 0 127 127 127 0 0 0 expression 0 longLabel HOB whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HOB cel tot - 1\ subGroups view=MinusSignal cellType=t3HOB localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHob0091301CellTotalMinusRep1\ type bigWig 1.000000 17470382.000000\ encTfChipPkENCFF142CPK K562 FUS narrowPeak Transcription Factor ChIP-seq Peaks of FUS in K562 from ENCODE 3 (ENCFF142CPK) 1 567 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of FUS in K562 from ENCODE 3 (ENCFF142CPK)\ parent encTfChipPk off\ shortLabel K562 FUS\ subGroups cellType=K562 factor=FUS\ track encTfChipPkENCFF142CPK\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_ctss_fwd LymphaticEndothelialCellsToVegfc_07hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_forward 0 567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep1%20%28MM%20XIX%20-%2015%29.CNhs13113.12274-130B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12274-130B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_tpm_fwd LymphaticEndothelialCellsToVegfc_07hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_forward 1 567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep1%20%28MM%20XIX%20-%2015%29.CNhs13113.12274-130B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12274-130B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneOsteoH3k79me2Pk Osteobl H3K79m2 broadPeak Osteoblasts H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 567 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Osteoblasts H3K79me2 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Osteobl H3K79m2\ subGroups view=Peaks factor=H3K79ME2 cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoH3k79me2Pk\ type broadPeak\ wgEncodeUwHistoneRptecH3k04me3StdPkRep1 RPTEC H3K4M3 Pk 1 narrowPeak RPTEC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 567 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPTEC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel RPTEC H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3RPTEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneRptecH3k04me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseT47dRawRep2 T-47D Sg 2 bigWig 1.000000 107581.000000 T-47D DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 567 0 0 0 127 127 127 0 0 0 regulation 0 longLabel T-47D DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel T-47D Sg 2\ subGroups view=zRSig cellType=t3T47D rep=rep2 treatment=None\ track wgEncodeUwDnaseT47dRawRep2\ type bigWig 1.000000 107581.000000\ wgEncodeHaibTfbsA549GabpV0422111Etoh02RawRep2 A549 GABP EtOH 2 bigWig 0.138150 187.746002 A549 GABP EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 568 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 GABP EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 GABP EtOH 2\ subGroups view=RawSignal factor=GABP cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549GabpV0422111Etoh02RawRep2\ type bigWig 0.138150 187.746002\ wgEncodeAwgTfbsSydhGm15510NfkbTnfaIggrabUniPk GM15510+TNFa RELA narrowPeak GM15510 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis 1 568 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM15510 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM15510+TNFa RELA\ subGroups tier=a30 cellType=GM15510 factor=RELA lab=Stanford\ track wgEncodeAwgTfbsSydhGm15510NfkbTnfaIggrabUniPk\ wgEncodeSydhTfbsHepg2Tr4UcdPk HEPG TR4 UCD narrowPeak HEPG2 TR4 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 568 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 TR4 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG TR4 UCD\ subGroups view=Peaks factor=TR4 cellType=t2HEPG2 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHepg2Tr4UcdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHob00902021CellTotalMinusRep2 HOB cel tot - 2 bigWig 1.000000 15597462.000000 HOB whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 568 0 0 0 127 127 127 0 0 0 expression 0 longLabel HOB whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HOB cel tot - 2\ subGroups view=MinusSignal cellType=t3HOB localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHob00902021CellTotalMinusRep2\ type bigWig 1.000000 15597462.000000\ encTfChipPkENCFF833FCO K562 GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in K562 from ENCODE 3 (ENCFF833FCO) 1 568 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of GABPA in K562 from ENCODE 3 (ENCFF833FCO)\ parent encTfChipPk off\ shortLabel K562 GABPA\ subGroups cellType=K562 factor=GABPA\ track encTfChipPkENCFF833FCO\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_ctss_rev LymphaticEndothelialCellsToVegfc_07hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_reverse 0 568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep1%20%28MM%20XIX%20-%2015%29.CNhs13113.12274-130B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12274-130B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_tpm_rev LymphaticEndothelialCellsToVegfc_07hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_reverse 1 568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep1%20%28MM%20XIX%20-%2015%29.CNhs13113.12274-130B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12274-130B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneOsteoH3k79me2Sig Osteobl H3K79m2 bigWig 0.040000 20036.480469 Osteoblasts H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 568 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Osteoblasts H3K79me2 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Osteobl H3K79m2\ subGroups view=Signal factor=H3K79ME2 cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoH3k79me2Sig\ type bigWig 0.040000 20036.480469\ wgEncodeUwHistoneRptecH3k04me3StdRawRep1 RPTEC H3K4M3 Sg 1 bigWig 1.000000 2407.000000 RPTEC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 568 0 0 0 127 127 127 0 0 0 regulation 0 longLabel RPTEC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel RPTEC H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3RPTEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneRptecH3k04me3StdRawRep1\ type bigWig 1.000000 2407.000000\ wgEncodeUwDnaseTh1HotspotsRep1 Th1 Ht 1 broadPeak Th1 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 568 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th1 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel Th1 Ht 1\ subGroups view=Hot cellType=t3TH01 rep=rep1 treatment=None\ track wgEncodeUwDnaseTh1HotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549Gata3V0422111PkRep1 A549 GATA3 V11 1 broadPeak A549 GATA3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 569 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 GATA3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 GATA3 V11 1\ subGroups view=Peaks factor=GATA3SC268 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsA549Gata3V0422111PkRep1\ type broadPeak\ wgEncodeAwgTfbsSydhGm18505Pol2IggmusUniPk GM18505 POLR2A narrowPeak GM18505 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis 1 569 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM18505 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM18505 POLR2A\ subGroups tier=a30 cellType=GM18505 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhGm18505Pol2IggmusUniPk\ wgEncodeSydhTfbsHepg2Tr4UcdSig HEPG TR4 UCD bigWig 0.000000 10481.000000 HEPG2 TR4 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 569 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 TR4 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG TR4 UCD\ subGroups view=Signal factor=TR4 cellType=t2HEPG2 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHepg2Tr4UcdSig\ type bigWig 0.000000 10481.000000\ wgEncodeCshlLongRnaSeqHob0091301CellTotalPlusRep1 HOB cel tot + 1 bigWig 1.000000 16707863.000000 HOB whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 569 0 0 0 127 127 127 0 0 0 expression 0 longLabel HOB whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HOB cel tot + 1\ subGroups view=PlusSignal cellType=t3HOB localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHob0091301CellTotalPlusRep1\ type bigWig 1.000000 16707863.000000\ encTfChipPkENCFF517KRT K562 GABPB1 narrowPeak Transcription Factor ChIP-seq Peaks of GABPB1 in K562 from ENCODE 3 (ENCFF517KRT) 1 569 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of GABPB1 in K562 from ENCODE 3 (ENCFF517KRT)\ parent encTfChipPk off\ shortLabel K562 GABPB1\ subGroups cellType=K562 factor=GABPB1\ track encTfChipPkENCFF517KRT\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_ctss_fwd LymphaticEndothelialCellsToVegfc_07hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_forward 0 569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep2%20%28MM%20XIV%20-%2015%29.CNhs13172.12396-131G2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12396-131G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_tpm_fwd LymphaticEndothelialCellsToVegfc_07hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_forward 1 569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep2%20%28MM%20XIV%20-%2015%29.CNhs13172.12396-131G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12396-131G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneOsteoH4k20me1Pk Osteobl H4K20m1 broadPeak Osteoblasts H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 569 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Osteoblasts H4K20me1 Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Osteobl H4K20m1\ subGroups view=Peaks factor=H4K20ME1 cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoH4k20me1Pk\ type broadPeak\ wgEncodeUwHistoneRptecH3k04me3StdHotspotsRep2 RPTEC H3K4M3 Ht 2 broadPeak RPTEC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 569 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPTEC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel RPTEC H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3RPTEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneRptecH3k04me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseTh1PkRep1 Th1 Pk 1 narrowPeak Th1 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 569 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th1 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Th1 Pk 1\ subGroups view=Peaks cellType=t3TH01 rep=rep1 treatment=None\ track wgEncodeUwDnaseTh1PkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549Gata3V0422111RawRep1 A549 GATA3 V11 1 bigWig 1.000000 2369.000000 A549 GATA3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 570 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 GATA3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 GATA3 V11 1\ subGroups view=RawSignal factor=GATA3SC268 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsA549Gata3V0422111RawRep1\ type bigWig 1.000000 2369.000000\ wgEncodeAwgTfbsSydhGm18505NfkbTnfaIggrabUniPk GM18505+TNFa RELA narrowPeak GM18505 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis 1 570 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM18505 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM18505+TNFa RELA\ subGroups tier=a30 cellType=GM18505 factor=RELA lab=Stanford\ track wgEncodeAwgTfbsSydhGm18505NfkbTnfaIggrabUniPk\ wgEncodeSydhTfbsHepg2Usf2IggrabPk HEPG USF2 IgR narrowPeak HEPG2 USF2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 570 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 USF2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG USF2 IgR\ subGroups view=Peaks factor=USF2 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Usf2IggrabPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHob00902021CellTotalPlusRep2 HOB cel tot + 2 bigWig 1.000000 17611104.000000 HOB whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 570 0 0 0 127 127 127 0 0 0 expression 0 longLabel HOB whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HOB cel tot + 2\ subGroups view=PlusSignal cellType=t3HOB localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHob00902021CellTotalPlusRep2\ type bigWig 1.000000 17611104.000000\ encTfChipPkENCFF632NQI K562 GATA1 narrowPeak Transcription Factor ChIP-seq Peaks of GATA1 in K562 from ENCODE 3 (ENCFF632NQI) 1 570 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of GATA1 in K562 from ENCODE 3 (ENCFF632NQI)\ parent encTfChipPk off\ shortLabel K562 GATA1\ subGroups cellType=K562 factor=GATA1\ track encTfChipPkENCFF632NQI\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_ctss_rev LymphaticEndothelialCellsToVegfc_07hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_reverse 0 570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep2%20%28MM%20XIV%20-%2015%29.CNhs13172.12396-131G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12396-131G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_tpm_rev LymphaticEndothelialCellsToVegfc_07hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_reverse 1 570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep2%20%28MM%20XIV%20-%2015%29.CNhs13172.12396-131G2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12396-131G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneOsteoH4k20me1Sig Osteobl H4K20m1 bigWig 0.040000 14205.599609 Osteoblasts H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 570 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Osteoblasts H4K20me1 Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Osteobl H4K20m1\ subGroups view=Signal factor=H4K20ME1 cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoH4k20me1Sig\ type bigWig 0.040000 14205.599609\ wgEncodeUwHistoneRptecH3k04me3StdPkRep2 RPTEC H3K4M3 Pk 2 narrowPeak RPTEC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 570 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPTEC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel RPTEC H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3RPTEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneRptecH3k04me3StdPkRep2\ type narrowPeak\ wgEncodeUwDnaseTh1RawRep1 Th1 Sg 1 bigWig 1.000000 10572.000000 Th1 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 570 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th1 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Th1 Sg 1\ subGroups view=zRSig cellType=t3TH01 rep=rep1 treatment=None\ track wgEncodeUwDnaseTh1RawRep1\ type bigWig 1.000000 10572.000000\ wgEncodeHaibTfbsA549Gata3V0422111PkRep2 A549 GATA3 V11 2 broadPeak A549 GATA3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 571 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 GATA3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 GATA3 V11 2\ subGroups view=Peaks factor=GATA3SC268 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsA549Gata3V0422111PkRep2\ type broadPeak\ wgEncodeAwgTfbsSydhGm18526Pol2IggmusUniPk GM18526 POLR2A narrowPeak GM18526 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis 1 571 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM18526 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM18526 POLR2A\ subGroups tier=a30 cellType=GM18526 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhGm18526Pol2IggmusUniPk\ wgEncodeSydhTfbsHepg2Usf2IggrabSig HEPG USF2 IgR bigWig 0.000000 9735.400391 HEPG2 USF2 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 571 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 USF2 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG USF2 IgR\ subGroups view=Signal factor=USF2 cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2Usf2IggrabSig\ type bigWig 0.000000 9735.400391\ wgEncodeCshlLongRnaSeqHpcplCellTotalAlnRep1 HPCPL cel tot A 1 bam HPC-PL whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 571 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPC-PL whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HPCPL cel tot A 1\ subGroups view=Alignments cellType=t3HPCPL localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHpcplCellTotalAlnRep1\ type bam\ encTfChipPkENCFF732HOE K562 GATA2 narrowPeak Transcription Factor ChIP-seq Peaks of GATA2 in K562 from ENCODE 3 (ENCFF732HOE) 1 571 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of GATA2 in K562 from ENCODE 3 (ENCFF732HOE)\ parent encTfChipPk on\ shortLabel K562 GATA2\ subGroups cellType=K562 factor=GATA2\ track encTfChipPkENCFF732HOE\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_ctss_fwd LymphaticEndothelialCellsToVegfc_07hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_forward 0 571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep3%20%28MM%20XXII%20-%2015%29.CNhs13290.12518-133B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12518-133B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_tpm_fwd LymphaticEndothelialCellsToVegfc_07hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_forward 1 571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep3%20%28MM%20XXII%20-%2015%29.CNhs13290.12518-133B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12518-133B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneOsteoP300kat3bPk Osteobl P300 broadPeak Osteoblasts P300 KAT3B Histone Mods by ChIP-seq Peaks from ENCODE/Broad 3 571 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Osteoblasts P300 KAT3B Histone Mods by ChIP-seq Peaks from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewPeaks off\ shortLabel Osteobl P300\ subGroups view=Peaks factor=P300KAT3B cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoP300kat3bPk\ type broadPeak\ wgEncodeUwHistoneRptecH3k04me3StdRawRep2 RPTEC H3K4M3 Sg 2 bigWig 1.000000 2903.000000 RPTEC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 571 0 0 0 127 127 127 0 0 0 regulation 0 longLabel RPTEC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel RPTEC H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3RPTEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneRptecH3k04me3StdRawRep2\ type bigWig 1.000000 2903.000000\ wgEncodeUwDnaseTh1HotspotsRep2 Th1 Ht 2 broadPeak Th1 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 571 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th1 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel Th1 Ht 2\ subGroups view=Hot cellType=t3TH01 treatment=None rep=rep2\ track wgEncodeUwDnaseTh1HotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549Gata3V0422111RawRep2 A549 GATA3 V11 2 bigWig 1.000000 2685.000000 A549 GATA3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 572 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 GATA3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 GATA3 V11 2\ subGroups view=RawSignal factor=GATA3SC268 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsA549Gata3V0422111RawRep2\ type bigWig 1.000000 2685.000000\ wgEncodeAwgTfbsSydhGm18526NfkbTnfaIggrabUniPk GM18526+TNFa RELA narrowPeak GM18526 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis 1 572 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM18526 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM18526+TNFa RELA\ subGroups tier=a30 cellType=GM18526 factor=RELA lab=Stanford\ track wgEncodeAwgTfbsSydhGm18526NfkbTnfaIggrabUniPk\ wgEncodeSydhTfbsHepg2Znf274UcdPk HEPG Z274 UCD narrowPeak HEPG2 ZNF274 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 572 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HEPG2 ZNF274 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEPG Z274 UCD\ subGroups view=Peaks factor=ZNF274 cellType=t2HEPG2 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHepg2Znf274UcdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqHpcplCellTotalAlnRep2 HPCPL cel tot A 2 bam HPC-PL whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 572 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPC-PL whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HPCPL cel tot A 2\ subGroups view=Alignments cellType=t3HPCPL localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHpcplCellTotalAlnRep2\ type bam\ encTfChipPkENCFF253FZN K562 GATAD2A narrowPeak Transcription Factor ChIP-seq Peaks of GATAD2A in K562 from ENCODE 3 (ENCFF253FZN) 1 572 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of GATAD2A in K562 from ENCODE 3 (ENCFF253FZN)\ parent encTfChipPk off\ shortLabel K562 GATAD2A\ subGroups cellType=K562 factor=GATAD2A\ track encTfChipPkENCFF253FZN\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_ctss_rev LymphaticEndothelialCellsToVegfc_07hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_reverse 0 572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep3%20%28MM%20XXII%20-%2015%29.CNhs13290.12518-133B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12518-133B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_tpm_rev LymphaticEndothelialCellsToVegfc_07hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_reverse 1 572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep3%20%28MM%20XXII%20-%2015%29.CNhs13290.12518-133B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12518-133B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneOsteoP300kat3bSig Osteobl P300 bigWig 0.040000 688.840027 Osteoblasts P300 KAT3B Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 572 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Osteoblasts P300 KAT3B Histone Mods by ChIP-seq Signal from ENCODE/Broad\ origAssembly hg19\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Osteobl P300\ subGroups view=Signal factor=P300KAT3B cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoP300kat3bSig\ type bigWig 0.040000 688.840027\ wgEncodeUwHistoneRptecInputStdRawRep1 RPTEC In Sg 1 bigWig 1.000000 17750.000000 RPTEC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 572 0 0 0 127 127 127 0 0 0 regulation 0 longLabel RPTEC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel RPTEC In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3RPTEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneRptecInputStdRawRep1\ type bigWig 1.000000 17750.000000\ wgEncodeUwDnaseTh1PkRep2 Th1 Pk 2 narrowPeak Th1 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 572 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th1 DNaseI HS Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Th1 Pk 2\ subGroups view=Peaks cellType=t3TH01 treatment=None rep=rep2\ track wgEncodeUwDnaseTh1PkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549GrPcr2xDex100nmPkRep1 A549 GR DX100nM 1 broadPeak A549 GR DEX 100nM PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 573 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 GR DEX 100nM PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 GR DX100nM 1\ subGroups view=Peaks factor=GR cellType=t2A549 protocol=PCR2X treatment=DEX100NM rep=rep1\ track wgEncodeHaibTfbsA549GrPcr2xDex100nmPkRep1\ type broadPeak\ wgEncodeAwgTfbsSydhGm18951Pol2IggmusUniPk GM18951 POLR2A narrowPeak GM18951 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis 1 573 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM18951 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM18951 POLR2A\ subGroups tier=a30 cellType=GM18951 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhGm18951Pol2IggmusUniPk\ wgEncodeSydhTfbsHepg2Znf274UcdSig HEPG Z274 UCD bigWig 0.000000 10548.200195 HEPG2 ZNF274 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 573 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 ZNF274 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG Z274 UCD\ subGroups view=Signal factor=ZNF274 cellType=t2HEPG2 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHepg2Znf274UcdSig\ type bigWig 0.000000 10548.200195\ wgEncodeCshlLongRnaSeqHpcplCellTotalContigs HPCPL cel tot C bed 6 + HPC-PL whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 573 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPC-PL whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HPCPL cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3HPCPL localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqHpcplCellTotalContigs\ type bed 6 +\ encTfChipPkENCFF549KOD K562 GATAD2B narrowPeak Transcription Factor ChIP-seq Peaks of GATAD2B in K562 from ENCODE 3 (ENCFF549KOD) 1 573 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of GATAD2B in K562 from ENCODE 3 (ENCFF549KOD)\ parent encTfChipPk off\ shortLabel K562 GATAD2B\ subGroups cellType=K562 factor=GATAD2B\ track encTfChipPkENCFF549KOD\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_ctss_fwd LymphaticEndothelialCellsToVegfc_08hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_forward 0 573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep1%20%28MM%20XIX%20-%2016%29.CNhs11937.12275-130B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12275-130B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_tpm_fwd LymphaticEndothelialCellsToVegfc_08hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_forward 1 573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep1%20%28MM%20XIX%20-%2016%29.CNhs11937.12275-130B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12275-130B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7\ urlLabel FANTOM5 Details:\ wgEncodeBroadHistoneOsteoblControlStdSig Osteobl Input bigWig 0.040000 32139.839844 Osteoblasts Input Histone Mods by ChIP-seq Signal from ENCODE/Broad 2 573 0 0 0 127 127 127 1 0 0 regulation 0 longLabel Osteoblasts Input Histone Mods by ChIP-seq Signal from ENCODE/Broad\ parent wgEncodeBroadHistoneViewSignal off\ shortLabel Osteobl Input\ subGroups view=Signal factor=zCTRL cellType=t3OSTEOBLASTS treatment=zNONE\ track wgEncodeBroadHistoneOsteoblControlStdSig\ type bigWig 0.040000 32139.839844\ wgEncodeUwHistoneSaecH3k4me3StdHotspotsRep1 SAEC H3K4M3 Ht 1 broadPeak SAEC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 573 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel SAEC H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3SAEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSaecH3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseTh1RawRep2 Th1 Sg 2 bigWig 1.000000 62366.000000 Th1 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 573 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th1 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Th1 Sg 2\ subGroups view=zRSig cellType=t3TH01 treatment=None rep=rep2\ track wgEncodeUwDnaseTh1RawRep2\ type bigWig 1.000000 62366.000000\ wgEncodeHaibTfbsA549GrPcr2xDex100nmRawRep1 A549 GR DX100nM 1 bigWig 0.178638 530.018005 A549 GR DEX 100nM PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 574 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 GR DEX 100nM PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 GR DX100nM 1\ subGroups view=RawSignal factor=GR cellType=t2A549 protocol=PCR2X treatment=DEX100NM rep=rep1\ track wgEncodeHaibTfbsA549GrPcr2xDex100nmRawRep1\ type bigWig 0.178638 530.018005\ wgEncodeAwgTfbsSydhGm18951NfkbTnfaIggrabUniPk GM18951+TNFa RELA narrowPeak GM18951 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis 1 574 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM18951 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM18951+TNFa RELA\ subGroups tier=a30 cellType=GM18951 factor=RELA lab=Stanford\ track wgEncodeAwgTfbsSydhGm18951NfkbTnfaIggrabUniPk\ wgEncodeSydhTfbsHepg2InputIgggoatSig HEPG Inpt IgG bigWig 1.000000 8986.000000 HEPG2 Input IgG-goat ChIP-seq Signal from ENCODE/SYDH 2 574 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 Input IgG-goat ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG Inpt IgG\ subGroups view=Signal factor=ZZZINPUTIGGgoat cellType=t2HEPG2 control=IGGGOAT treatment=aNONE\ track wgEncodeSydhTfbsHepg2InputIgggoatSig\ type bigWig 1.000000 8986.000000\ wgEncodeCshlLongRnaSeqHpcplCellTotalJunctions HPCPL cel tot J bed 6 + HPC-PL whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 574 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPC-PL whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HPCPL cel tot J\ subGroups view=Junctions cellType=t3HPCPL localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHpcplCellTotalJunctions\ type bed 6 +\ encTfChipPkENCFF126BCK K562 GMEB1 narrowPeak Transcription Factor ChIP-seq Peaks of GMEB1 in K562 from ENCODE 3 (ENCFF126BCK) 1 574 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of GMEB1 in K562 from ENCODE 3 (ENCFF126BCK)\ parent encTfChipPk off\ shortLabel K562 GMEB1\ subGroups cellType=K562 factor=GMEB1\ track encTfChipPkENCFF126BCK\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_ctss_rev LymphaticEndothelialCellsToVegfc_08hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_reverse 0 574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep1%20%28MM%20XIX%20-%2016%29.CNhs11937.12275-130B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12275-130B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_tpm_rev LymphaticEndothelialCellsToVegfc_08hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_reverse 1 574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep1%20%28MM%20XIX%20-%2016%29.CNhs11937.12275-130B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12275-130B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecH3k4me3StdPkRep1 SAEC H3K4M3 Pk 1 narrowPeak SAEC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 574 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel SAEC H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3SAEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSaecH3k4me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseTh1wb33676984HotspotsRep1 Th1 Wb984 Ht 1 broadPeak Th1 Wb33676984 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 574 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th1 Wb33676984 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel Th1 Wb984 Ht 1\ subGroups view=Hot cellType=t3TH01WB33676984 treatment=None rep=rep1\ track wgEncodeUwDnaseTh1wb33676984HotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549GrPcr2xDex100nmPkRep2 A549 GR DX100nM 2 broadPeak A549 GR DEX 100nM PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 575 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 GR DEX 100nM PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 GR DX100nM 2\ subGroups view=Peaks factor=GR cellType=t2A549 protocol=PCR2X treatment=DEX100NM rep=rep2\ track wgEncodeHaibTfbsA549GrPcr2xDex100nmPkRep2\ type broadPeak\ wgEncodeAwgTfbsSydhGm19099Pol2IggmusUniPk GM19099 POLR2A narrowPeak GM19099 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis 1 575 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM19099 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM19099 POLR2A\ subGroups tier=a30 cellType=GM19099 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhGm19099Pol2IggmusUniPk\ wgEncodeSydhTfbsHepg2InputIggrabSig HEPG Inpt IgR bigWig 0.000000 10226.700195 HEPG2 Input IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 575 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 Input IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t2HEPG2 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsHepg2InputIggrabSig\ type bigWig 0.000000 10226.700195\ wgEncodeCshlLongRnaSeqHpcplCellTotalMinusRep1 HPCPL cel tot - 1 bigWig 1.000000 9576609.000000 HPC-PL whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 575 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPC-PL whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HPCPL cel tot - 1\ subGroups view=MinusSignal cellType=t3HPCPL localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHpcplCellTotalMinusRep1\ type bigWig 1.000000 9576609.000000\ encTfChipPkENCFF474NLG K562 HCFC1 narrowPeak Transcription Factor ChIP-seq Peaks of HCFC1 in K562 from ENCODE 3 (ENCFF474NLG) 1 575 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of HCFC1 in K562 from ENCODE 3 (ENCFF474NLG)\ parent encTfChipPk off\ shortLabel K562 HCFC1\ subGroups cellType=K562 factor=HCFC1\ track encTfChipPkENCFF474NLG\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_ctss_fwd LymphaticEndothelialCellsToVegfc_08hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_forward 0 575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep2%20%28MM%20XIV%20-%2016%29.CNhs13173.12397-131G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12397-131G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_tpm_fwd LymphaticEndothelialCellsToVegfc_08hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_forward 1 575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep2%20%28MM%20XIV%20-%2016%29.CNhs13173.12397-131G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12397-131G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecH3k4me3StdRawRep1 SAEC H3K4M3 Sg 1 bigWig 1.000000 1353.000000 SAEC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 575 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SAEC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SAEC H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3SAEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSaecH3k4me3StdRawRep1\ type bigWig 1.000000 1353.000000\ wgEncodeUwDnaseTh1wb33676984PkRep1 Th1 Wb984 Pk 1 narrowPeak Th1 Wb33676984 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 575 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th1 Wb33676984 DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Th1 Wb984 Pk 1\ subGroups view=Peaks cellType=t3TH01WB33676984 treatment=None rep=rep1\ track wgEncodeUwDnaseTh1wb33676984PkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549GrPcr2xDex100nmRawRep2 A549 GR DX100nM 2 bigWig 0.159649 105.927002 A549 GR DEX 100nM PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 576 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 GR DEX 100nM PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 GR DX100nM 2\ subGroups view=RawSignal factor=GR cellType=t2A549 protocol=PCR2X treatment=DEX100NM rep=rep2\ track wgEncodeHaibTfbsA549GrPcr2xDex100nmRawRep2\ type bigWig 0.159649 105.927002\ wgEncodeAwgTfbsSydhGm19099NfkbTnfaIggrabUniPk GM19099+TNFa RELA narrowPeak GM19099 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis 1 576 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM19099 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM19099+TNFa RELA\ subGroups tier=a30 cellType=GM19099 factor=RELA lab=Stanford\ track wgEncodeAwgTfbsSydhGm19099NfkbTnfaIggrabUniPk\ wgEncodeSydhTfbsHepg2InputForsklnStdSig HEPG frsk Inpt Sd bigWig 0.000000 8468.099609 HEPG2 Input Standard forskolin ChIP-seq Signal from ENCODE/SYDH 2 576 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 Input Standard forskolin ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG frsk Inpt Sd\ subGroups view=Signal factor=ZZZINPUTSTD cellType=t2HEPG2 control=STD treatment=FORSKLN\ track wgEncodeSydhTfbsHepg2InputForsklnStdSig\ type bigWig 0.000000 8468.099609\ wgEncodeCshlLongRnaSeqHpcplCellTotalMinusRep2 HPCPL cel tot - 2 bigWig 1.000000 7540835.000000 HPC-PL whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 576 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPC-PL whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HPCPL cel tot - 2\ subGroups view=MinusSignal cellType=t3HPCPL localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHpcplCellTotalMinusRep2\ type bigWig 1.000000 7540835.000000\ encTfChipPkENCFF996CUX K562 HDAC1 1 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF996CUX) 1 576 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF996CUX)\ parent encTfChipPk off\ shortLabel K562 HDAC1 1\ subGroups cellType=K562 factor=HDAC1\ track encTfChipPkENCFF996CUX\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_ctss_rev LymphaticEndothelialCellsToVegfc_08hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_reverse 0 576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep2%20%28MM%20XIV%20-%2016%29.CNhs13173.12397-131G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12397-131G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_tpm_rev LymphaticEndothelialCellsToVegfc_08hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_reverse 1 576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep2%20%28MM%20XIV%20-%2016%29.CNhs13173.12397-131G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12397-131G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecH3k4me3StdHotspotsRep2 SAEC H3K4M3 Ht 2 broadPeak SAEC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 576 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel SAEC H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3SAEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSaecH3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseTh1wb33676984RawRep1 Th1 Wb984 Sg 1 bigWig 1.000000 34066.000000 Th1 Wb33676984 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 576 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th1 Wb33676984 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Th1 Wb984 Sg 1\ subGroups view=zRSig cellType=t3TH01WB33676984 treatment=None rep=rep1\ track wgEncodeUwDnaseTh1wb33676984RawRep1\ type bigWig 1.000000 34066.000000\ wgEncodeHaibTfbsA549GrPcr1xDex500pmPkRep1 A549 GR DX.5nM 1 broadPeak A549 GR DEX 500pM PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 577 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 GR DEX 500pM PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ origAssembly hg18\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 GR DX.5nM 1\ subGroups view=Peaks factor=GR cellType=t2A549 protocol=PCR1X treatment=DEX500PM rep=rep1\ track wgEncodeHaibTfbsA549GrPcr1xDex500pmPkRep1\ type broadPeak\ wgEncodeAwgTfbsSydhGm19193Pol2IggmusUniPk GM19193 POLR2A narrowPeak GM19193 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis 1 577 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM19193 TFBS Uniform Peaks of Pol2 from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM19193 POLR2A\ subGroups tier=a30 cellType=GM19193 factor=POLR2A lab=Stanford\ track wgEncodeAwgTfbsSydhGm19193Pol2IggmusUniPk\ wgEncodeSydhTfbsHepg2InputInslnStdSig HEPG isln Inpt Sd bigWig 0.000000 6198.600098 HEPG2 Input Standard insulin ChIP-seq Signal from ENCODE/SYDH 2 577 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 Input Standard insulin ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG isln Inpt Sd\ subGroups view=Signal factor=ZZZINPUTSTD cellType=t2HEPG2 control=STD treatment=INSLN\ track wgEncodeSydhTfbsHepg2InputInslnStdSig\ type bigWig 0.000000 6198.600098\ wgEncodeCshlLongRnaSeqHpcplCellTotalPlusRep1 HPCPL cel tot + 1 bigWig 1.000000 6839389.000000 HPC-PL whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 577 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPC-PL whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HPCPL cel tot + 1\ subGroups view=PlusSignal cellType=t3HPCPL localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHpcplCellTotalPlusRep1\ type bigWig 1.000000 6839389.000000\ encTfChipPkENCFF357NRL K562 HDAC1 2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF357NRL) 1 577 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF357NRL)\ parent encTfChipPk off\ shortLabel K562 HDAC1 2\ subGroups cellType=K562 factor=HDAC1\ track encTfChipPkENCFF357NRL\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_ctss_fwd LymphaticEndothelialCellsToVegfc_08hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_forward 0 577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep3%20%28MM%20XXII%20-%2016%29.CNhs13291.12519-133B8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12519-133B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_tpm_fwd LymphaticEndothelialCellsToVegfc_08hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_forward 1 577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep3%20%28MM%20XXII%20-%2016%29.CNhs13291.12519-133B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12519-133B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecH3k4me3StdPkRep2 SAEC H3K4M3 Pk 2 narrowPeak SAEC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 577 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel SAEC H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3SAEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSaecH3k4me3StdPkRep2\ type narrowPeak\ wgEncodeUwDnaseTh1wb54553204HotspotsRep1 Th1 Wb204 Ht 1 broadPeak Th1 Wb54553204 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 577 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th1 Wb54553204 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel Th1 Wb204 Ht 1\ subGroups view=Hot cellType=t3TH01WB54553204 treatment=None rep=rep1\ track wgEncodeUwDnaseTh1wb54553204HotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549GrPcr1xDex500pmRawRep1 A549 GR DX.5nM 1 bigWig 0.153989 215.815002 A549 GR DEX 500pM PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 578 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 GR DEX 500pM PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 GR DX.5nM 1\ subGroups view=RawSignal factor=GR cellType=t2A549 protocol=PCR1X treatment=DEX500PM rep=rep1\ track wgEncodeHaibTfbsA549GrPcr1xDex500pmRawRep1\ type bigWig 0.153989 215.815002\ wgEncodeAwgTfbsSydhGm19193NfkbTnfaIggrabUniPk GM19193+TNFa RELA narrowPeak GM19193 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis 1 578 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM19193 (TNFa) TFBS Uniform Peaks of NFKB from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM19193+TNFa RELA\ subGroups tier=a30 cellType=GM19193 factor=RELA lab=Stanford\ track wgEncodeAwgTfbsSydhGm19193NfkbTnfaIggrabUniPk\ wgEncodeSydhTfbsHepg2InputPravastStdSig HEPG prav Inpt Sd bigWig 0.000000 11025.599609 HEPG2 Input Standard pravastatin ChIP-seq Signal from ENCODE/SYDH 2 578 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 Input Standard pravastatin ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG prav Inpt Sd\ subGroups view=Signal factor=ZZZINPUTSTD cellType=t2HEPG2 control=STD treatment=PRAVAST\ track wgEncodeSydhTfbsHepg2InputPravastStdSig\ type bigWig 0.000000 11025.599609\ wgEncodeCshlLongRnaSeqHpcplCellTotalPlusRep2 HPCPL cel tot + 2 bigWig 1.000000 7334678.000000 HPC-PL whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 578 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPC-PL whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HPCPL cel tot + 2\ subGroups view=PlusSignal cellType=t3HPCPL localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHpcplCellTotalPlusRep2\ type bigWig 1.000000 7334678.000000\ encTfChipPkENCFF019ALY K562 HDAC1 3 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF019ALY) 1 578 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF019ALY)\ parent encTfChipPk off\ shortLabel K562 HDAC1 3\ subGroups cellType=K562 factor=HDAC1\ track encTfChipPkENCFF019ALY\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_ctss_rev LymphaticEndothelialCellsToVegfc_08hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_reverse 0 578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep3%20%28MM%20XXII%20-%2016%29.CNhs13291.12519-133B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12519-133B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_tpm_rev LymphaticEndothelialCellsToVegfc_08hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_reverse 1 578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep3%20%28MM%20XXII%20-%2016%29.CNhs13291.12519-133B8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12519-133B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecH3k4me3StdRawRep2 SAEC H3K4M3 Sg 2 bigWig 1.000000 1651.000000 SAEC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 578 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SAEC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SAEC H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3SAEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSaecH3k4me3StdRawRep2\ type bigWig 1.000000 1651.000000\ wgEncodeUwDnaseTh1wb54553204PkRep1 Th1 Wb204 Pk 1 narrowPeak Th1 Wb54553204 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 578 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th1 Wb54553204 DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Th1 Wb204 Pk 1\ subGroups view=Peaks cellType=t3TH01WB54553204 treatment=None rep=rep1\ track wgEncodeUwDnaseTh1wb54553204PkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549GrPcr1xDex500pmPkRep2 A549 GR DX.5nM 2 broadPeak A549 GR DEX 500pM PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 579 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 GR DEX 500pM PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ origAssembly hg18\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 GR DX.5nM 2\ subGroups view=Peaks factor=GR cellType=t2A549 protocol=PCR1X treatment=DEX500PM rep=rep2\ track wgEncodeHaibTfbsA549GrPcr1xDex500pmPkRep2\ type broadPeak\ wgEncodeAwgTfbsUtaGm19238CtcfUniPk GM19238 CTCF narrowPeak GM19238 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 579 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM19238 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM19238 CTCF\ subGroups tier=a30 cellType=GM19238 factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaGm19238CtcfUniPk\ wgEncodeSydhTfbsHepg2InputUcdSig HEPG Inpt UCD bigWig 0.000000 11634.599609 HEPG2 Input UC Davis ChIP-seq Signal from ENCODE/SYDH 2 579 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HEPG2 Input UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEPG Inpt UCD\ subGroups view=Signal factor=ZZZINPUTUCD cellType=t2HEPG2 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHepg2InputUcdSig\ type bigWig 0.000000 11634.599609\ wgEncodeCshlLongRnaSeqHpiepcCellTotalAlnRep1 HPIEC cel tot A 1 bam HPIEpC whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 579 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPIEpC whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HPIEC cel tot A 1\ subGroups view=Alignments cellType=t3HPIEPC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHpiepcCellTotalAlnRep1\ type bam\ encTfChipPkENCFF605KFA K562 HDAC1 4 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF605KFA) 1 579 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF605KFA)\ parent encTfChipPk off\ shortLabel K562 HDAC1 4\ subGroups cellType=K562 factor=HDAC1\ track encTfChipPkENCFF605KFA\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_ctss_fwd Mcf7ToEgf1_08hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_forward 0 579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep1.CNhs12565.13046-139G4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13046-139G4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr1+\ subGroups sequenceTech=LQhCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_tpm_fwd Mcf7ToEgf1_08hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_forward 1 579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep1.CNhs12565.13046-139G4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13046-139G4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr1+\ subGroups sequenceTech=LQhCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecH3k27me3StdHotspotsRep1 SAEC H3K27M3 Ht 1 broadPeak SAEC H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 579 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel SAEC H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t3SAEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSaecH3k27me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseTh1wb54553204RawRep1 Th1 Wb204 Sg 1 bigWig 1.000000 62017.000000 Th1 Wb54553204 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 579 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th1 Wb54553204 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Th1 Wb204 Sg 1\ subGroups view=zRSig cellType=t3TH01WB54553204 treatment=None rep=rep1\ track wgEncodeUwDnaseTh1wb54553204RawRep1\ type bigWig 1.000000 62017.000000\ wgEncodeHaibTfbsA549GrPcr1xDex500pmRawRep2 A549 GR DX.5nM 2 bigWig 0.201001 188.690002 A549 GR DEX 500pM PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 580 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 GR DEX 500pM PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 GR DX.5nM 2\ subGroups view=RawSignal factor=GR cellType=t2A549 protocol=PCR1X treatment=DEX500PM rep=rep2\ track wgEncodeHaibTfbsA549GrPcr1xDex500pmRawRep2\ type bigWig 0.201001 188.690002\ wgEncodeAwgTfbsUtaGm19239CtcfUniPk GM19239 CTCF narrowPeak GM19239 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 580 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM19239 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM19239 CTCF\ subGroups tier=a30 cellType=GM19239 factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaGm19239CtcfUniPk\ wgEncodeCshlLongRnaSeqHpiepcCellTotalAlnRep2 HPIEC cel tot A 2 bam HPIEpC whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 580 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPIEpC whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HPIEC cel tot A 2\ subGroups view=Alignments cellType=t3HPIEPC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHpiepcCellTotalAlnRep2\ type bam\ wgEncodeSydhTfbsHuvecCfosUcdPk HUVEC cFOS UCD narrowPeak HUVEC c-FOS UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 580 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC c-FOS UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HUVEC cFOS UCD\ subGroups view=Peaks factor=CFOS cellType=t2HUVEC control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHuvecCfosUcdPk\ type narrowPeak\ encTfChipPkENCFF657VJX K562 HDAC2 1 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF657VJX) 1 580 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF657VJX)\ parent encTfChipPk off\ shortLabel K562 HDAC2 1\ subGroups cellType=K562 factor=HDAC2\ track encTfChipPkENCFF657VJX\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_ctss_rev Mcf7ToEgf1_08hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_reverse 0 580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep1.CNhs12565.13046-139G4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13046-139G4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr1-\ subGroups sequenceTech=LQhCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_tpm_rev Mcf7ToEgf1_08hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_reverse 1 580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep1.CNhs12565.13046-139G4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13046-139G4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr1-\ subGroups sequenceTech=LQhCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecH3k27me3StdPkRep1 SAEC H3K27M3 Pk 1 narrowPeak SAEC H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 580 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel SAEC H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t3SAEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSaecH3k27me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseTh1wb54553204HotspotsRep2 Th1 Wb204 Ht 2 broadPeak Th1 Wb54553204 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 580 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th1 Wb54553204 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel Th1 Wb204 Ht 2\ subGroups view=Hot cellType=t3TH01WB54553204 treatment=None rep=rep2\ track wgEncodeUwDnaseTh1wb54553204HotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549GrPcr1xDex50nmPkRep1 A549 GR DX50nM 1 broadPeak A549 GR DEX 50nM PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 581 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 GR DEX 50nM PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ origAssembly hg18\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 GR DX50nM 1\ subGroups view=Peaks factor=GR cellType=t2A549 protocol=PCR1X treatment=DEX50NM rep=rep1\ track wgEncodeHaibTfbsA549GrPcr1xDex50nmPkRep1\ type broadPeak\ wgEncodeAwgTfbsUtaGm19240CtcfUniPk GM19240 CTCF narrowPeak GM19240 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 581 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM19240 TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel GM19240 CTCF\ subGroups tier=a30 cellType=GM19240 factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaGm19240CtcfUniPk\ wgEncodeCshlLongRnaSeqHpiepcCellTotalContigs HPIEC cel tot C bed 6 + HPIEpC whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 581 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPIEpC whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HPIEC cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3HPIEPC localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqHpiepcCellTotalContigs\ type bed 6 +\ wgEncodeSydhTfbsHuvecCfosUcdSig HUVEC cFOS UCD bigWig 1.000000 18203.000000 HUVEC c-FOS UC Davis ChIP-seq Signal from ENCODE/SYDH 2 581 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC c-FOS UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HUVEC cFOS UCD\ subGroups view=Signal factor=CFOS cellType=t2HUVEC control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHuvecCfosUcdSig\ type bigWig 1.000000 18203.000000\ encTfChipPkENCFF490VVG K562 HDAC2 2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF490VVG) 1 581 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF490VVG)\ parent encTfChipPk off\ shortLabel K562 HDAC2 2\ subGroups cellType=K562 factor=HDAC2\ track encTfChipPkENCFF490VVG\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_ctss_fwd Mcf7ToEgf1_00hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_forward 0 581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep2.CNhs12475.13097-140D1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13097-140D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_tpm_fwd Mcf7ToEgf1_00hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_forward 1 581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep2.CNhs12475.13097-140D1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13097-140D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecH3k27me3StdRawRep1 SAEC H3K27M3 Sg 1 bigWig 1.000000 3822.000000 SAEC H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 581 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SAEC H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SAEC H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t3SAEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSaecH3k27me3StdRawRep1\ type bigWig 1.000000 3822.000000\ wgEncodeUwDnaseTh1wb54553204PkRep2 Th1 Wb204 Pk 2 narrowPeak Th1 Wb54553204 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 581 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th1 Wb54553204 DNaseI HS Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Th1 Wb204 Pk 2\ subGroups view=Peaks cellType=t3TH01WB54553204 treatment=None rep=rep2\ track wgEncodeUwDnaseTh1wb54553204PkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549GrPcr1xDex50nmRawRep1 A549 GR DX50nM 1 bigWig 0.159708 203.427994 A549 GR DEX 50nM PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 582 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 GR DEX 50nM PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 GR DX50nM 1\ subGroups view=RawSignal factor=GR cellType=t2A549 protocol=PCR1X treatment=DEX50NM rep=rep1\ track wgEncodeHaibTfbsA549GrPcr1xDex50nmRawRep1\ type bigWig 0.159708 203.427994\ wgEncodeAwgTfbsUwHacCtcfUniPk HAc CTCF narrowPeak HAc TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 582 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HAc TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HAc CTCF\ subGroups tier=a30 cellType=HAC factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHacCtcfUniPk\ wgEncodeCshlLongRnaSeqHpiepcCellTotalJunctions HPIEC cel tot J bed 6 + HPIEpC whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 582 0 0 0 127 127 127 0 0 0 expression 1 longLabel HPIEpC whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HPIEC cel tot J\ subGroups view=Junctions cellType=t3HPIEPC localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHpiepcCellTotalJunctions\ type bed 6 +\ wgEncodeSydhTfbsHuvecCjunStdPk HUVEC cJun Std narrowPeak HUVEC c-Jun Standard ChIP-seq Peaks from ENCODE/SYDH 3 582 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC c-Jun Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HUVEC cJun Std\ subGroups view=Peaks factor=CJUN cellType=t2HUVEC control=STD treatment=aNONE\ track wgEncodeSydhTfbsHuvecCjunStdPk\ type narrowPeak\ encTfChipPkENCFF562JDH K562 HDAC2 3 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF562JDH) 1 582 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF562JDH)\ parent encTfChipPk off\ shortLabel K562 HDAC2 3\ subGroups cellType=K562 factor=HDAC2\ track encTfChipPkENCFF562JDH\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_ctss_rev Mcf7ToEgf1_00hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_reverse 0 582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep2.CNhs12475.13097-140D1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13097-140D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_tpm_rev Mcf7ToEgf1_00hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_reverse 1 582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep2.CNhs12475.13097-140D1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13097-140D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecH3k27me3StdHotspotsRep2 SAEC H3K27M3 Ht 2 broadPeak SAEC H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 582 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel SAEC H3K27M3 Ht 2\ subGroups view=Hot factor=H3K27ME3 cellType=t3SAEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSaecH3k27me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseTh1wb54553204RawRep2 Th1 Wb204 Sg 2 bigWig 1.000000 18797.000000 Th1 Wb54553204 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 582 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th1 Wb54553204 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Th1 Wb204 Sg 2\ subGroups view=zRSig cellType=t3TH01WB54553204 treatment=None rep=rep2\ track wgEncodeUwDnaseTh1wb54553204RawRep2\ type bigWig 1.000000 18797.000000\ wgEncodeHaibTfbsA549GrPcr1xDex50nmPkRep2 A549 GR DX50nM 2 broadPeak A549 GR DEX 50nM PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 583 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 GR DEX 50nM PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ origAssembly hg18\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 GR DX50nM 2\ subGroups view=Peaks factor=GR cellType=t2A549 protocol=PCR1X treatment=DEX50NM rep=rep2\ track wgEncodeHaibTfbsA549GrPcr1xDex50nmPkRep2\ type broadPeak\ wgEncodeAwgTfbsUwHaspCtcfUniPk HA-sp CTCF narrowPeak HA-sp TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 583 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HA-sp TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HA-sp CTCF\ subGroups tier=a30 cellType=HASP factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHaspCtcfUniPk\ wgEncodeCshlLongRnaSeqHpiepcCellTotalMinusRep1 HPIEC cel tot - 1 bigWig 1.000000 2704101.000000 HPIEpC whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 583 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPIEpC whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HPIEC cel tot - 1\ subGroups view=MinusSignal cellType=t3HPIEPC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHpiepcCellTotalMinusRep1\ type bigWig 1.000000 2704101.000000\ wgEncodeSydhTfbsHuvecCjunStdSig HUVEC cJun Std bigWig 0.000000 12070.400391 HUVEC c-Jun Standard ChIP-seq Signal from ENCODE/SYDH 2 583 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC c-Jun Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HUVEC cJun Std\ subGroups view=Signal factor=CJUN cellType=t2HUVEC control=STD treatment=aNONE\ track wgEncodeSydhTfbsHuvecCjunStdSig\ type bigWig 0.000000 12070.400391\ encTfChipPkENCFF580DYE K562 HDAC3 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC3 in K562 from ENCODE 3 (ENCFF580DYE) 1 583 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of HDAC3 in K562 from ENCODE 3 (ENCFF580DYE)\ parent encTfChipPk off\ shortLabel K562 HDAC3\ subGroups cellType=K562 factor=HDAC3\ track encTfChipPkENCFF580DYE\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_ctss_fwd Mcf7ToEgf1_00hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_forward 0 583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep3.CNhs12703.13163-141B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13163-141B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_tpm_fwd Mcf7ToEgf1_00hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_forward 1 583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep3.CNhs12703.13163-141B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13163-141B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecH3k27me3StdPkRep2 SAEC H3K27M3 Pk 2 narrowPeak SAEC H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 583 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel SAEC H3K27M3 Pk 2\ subGroups view=Peaks factor=H3K27ME3 cellType=t3SAEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSaecH3k27me3StdPkRep2\ type narrowPeak\ wgEncodeUwDnaseTh2HotspotsRep1 Th2 Ht 1 broadPeak Th2 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 583 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th2 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel Th2 Ht 1\ subGroups view=Hot cellType=t3TH02 rep=rep1 treatment=None\ track wgEncodeUwDnaseTh2HotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549GrPcr1xDex50nmRawRep2 A549 GR DX50nM 2 bigWig 0.185807 165.692993 A549 GR DEX 50nM PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 584 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 GR DEX 50nM PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 GR DX50nM 2\ subGroups view=RawSignal factor=GR cellType=t2A549 protocol=PCR1X treatment=DEX50NM rep=rep2\ track wgEncodeHaibTfbsA549GrPcr1xDex50nmRawRep2\ type bigWig 0.185807 165.692993\ wgEncodeAwgTfbsUwHbmecCtcfUniPk HBMEC CTCF narrowPeak HBMEC TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 584 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HBMEC TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HBMEC CTCF\ subGroups tier=a30 cellType=HBMEC factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHbmecCtcfUniPk\ wgEncodeCshlLongRnaSeqHpiepcCellTotalMinusRep2 HPIEC cel tot - 2 bigWig 1.000000 20406896.000000 HPIEpC whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 584 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPIEpC whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HPIEC cel tot - 2\ subGroups view=MinusSignal cellType=t3HPIEPC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHpiepcCellTotalMinusRep2\ type bigWig 1.000000 20406896.000000\ wgEncodeSydhTfbsHuvecGata2UcdPk HUVEC GAT2 UCD narrowPeak HUVEC GATA2 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 584 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC GATA2 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HUVEC GAT2 UCD\ subGroups view=Peaks factor=GATA2 cellType=t2HUVEC control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHuvecGata2UcdPk\ type narrowPeak\ encTfChipPkENCFF998HOR K562 HDAC6 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC6 in K562 from ENCODE 3 (ENCFF998HOR) 1 584 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of HDAC6 in K562 from ENCODE 3 (ENCFF998HOR)\ parent encTfChipPk off\ shortLabel K562 HDAC6\ subGroups cellType=K562 factor=HDAC6\ track encTfChipPkENCFF998HOR\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_ctss_rev Mcf7ToEgf1_00hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_reverse 0 584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep3.CNhs12703.13163-141B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13163-141B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_tpm_rev Mcf7ToEgf1_00hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_reverse 1 584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep3.CNhs12703.13163-141B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13163-141B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecH3k27me3StdRawRep2 SAEC H3K27M3 Sg 2 bigWig 1.000000 4807.000000 SAEC H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 584 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SAEC H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SAEC H3K27M3 Sg 2\ subGroups view=zRSig factor=H3K27ME3 cellType=t3SAEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSaecH3k27me3StdRawRep2\ type bigWig 1.000000 4807.000000\ wgEncodeUwDnaseTh2PkRep1 Th2 Pk 1 narrowPeak Th2 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 584 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th2 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Th2 Pk 1\ subGroups view=Peaks cellType=t3TH02 rep=rep1 treatment=None\ track wgEncodeUwDnaseTh2PkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549GrPcr1xDex5nmPkRep1 A549 GR DX5nM 1 broadPeak A549 GR DEX 5nM PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 585 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 GR DEX 5nM PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ origAssembly hg18\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 GR DX5nM 1\ subGroups view=Peaks factor=GR cellType=t2A549 protocol=PCR1X treatment=DEX5NM rep=rep1\ track wgEncodeHaibTfbsA549GrPcr1xDex5nmPkRep1\ type broadPeak\ wgEncodeAwgTfbsUwHcfaaCtcfUniPk HCFaa CTCF narrowPeak HCFaa TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 585 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCFaa TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HCFaa CTCF\ subGroups tier=a30 cellType=HCFAA factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHcfaaCtcfUniPk\ wgEncodeCshlLongRnaSeqHpiepcCellTotalPlusRep1 HPIEC cel tot + 1 bigWig 1.000000 2588897.000000 HPIEpC whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 585 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPIEpC whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HPIEC cel tot + 1\ subGroups view=PlusSignal cellType=t3HPIEPC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHpiepcCellTotalPlusRep1\ type bigWig 1.000000 2588897.000000\ wgEncodeSydhTfbsHuvecGata2UcdSig HUVEC GAT2 UCD bigWig 0.000000 8893.500000 HUVEC GATA2 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 585 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC GATA2 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HUVEC GAT2 UCD\ subGroups view=Signal factor=GATA2 cellType=t2HUVEC control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHuvecGata2UcdSig\ type bigWig 0.000000 8893.500000\ encTfChipPkENCFF676NPW K562 HES1 narrowPeak Transcription Factor ChIP-seq Peaks of HES1 in K562 from ENCODE 3 (ENCFF676NPW) 1 585 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of HES1 in K562 from ENCODE 3 (ENCFF676NPW)\ parent encTfChipPk off\ shortLabel K562 HES1\ subGroups cellType=K562 factor=HES1\ track encTfChipPkENCFF676NPW\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_ctss_fwd Mcf7ToEgf1_00hr15minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_forward 0 585 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep1.CNhs12420.13032-139E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13032-139E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_tpm_fwd Mcf7ToEgf1_00hr15minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_forward 1 585 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep1.CNhs12420.13032-139E8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13032-139E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecH3k36me3StdHotspotsRep1 SAEC H3K36M3 Ht 1 broadPeak SAEC H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 585 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel SAEC H3K36M3 Ht 1\ subGroups view=Hot factor=H3K36ME3 cellType=t3SAEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSaecH3k36me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseTh2RawRep1 Th2 Sg 1 bigWig 1.000000 11480.000000 Th2 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 585 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th2 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Th2 Sg 1\ subGroups view=zRSig cellType=t3TH02 rep=rep1 treatment=None\ track wgEncodeUwDnaseTh2RawRep1\ type bigWig 1.000000 11480.000000\ wgEncodeHaibTfbsA549GrPcr1xDex5nmRawRep1 A549 GR DX5nM 1 bigWig 0.150640 241.927002 A549 GR DEX 5nM PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 586 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 GR DEX 5nM PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 GR DX5nM 1\ subGroups view=RawSignal factor=GR cellType=t2A549 protocol=PCR1X treatment=DEX5NM rep=rep1\ track wgEncodeHaibTfbsA549GrPcr1xDex5nmRawRep1\ type bigWig 0.150640 241.927002\ wgEncodeAwgTfbsUwHcmCtcfUniPk HCM CTCF narrowPeak HCM TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 586 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCM TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HCM CTCF\ subGroups tier=a30 cellType=HCM factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHcmCtcfUniPk\ wgEncodeCshlLongRnaSeqHpiepcCellTotalPlusRep2 HPIEC cel tot + 2 bigWig 1.000000 22049012.000000 HPIEpC whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 586 0 0 0 127 127 127 0 0 0 expression 0 longLabel HPIEpC whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HPIEC cel tot + 2\ subGroups view=PlusSignal cellType=t3HPIEPC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHpiepcCellTotalPlusRep2\ type bigWig 1.000000 22049012.000000\ wgEncodeSydhTfbsHuvecMaxStdPk HUVEC Max Std narrowPeak HUVEC Max Standard ChIP-seq Peaks from ENCODE/SYDH 3 586 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC Max Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HUVEC Max Std\ subGroups view=Peaks factor=MAX cellType=t2HUVEC control=STD treatment=aNONE\ track wgEncodeSydhTfbsHuvecMaxStdPk\ type narrowPeak\ encTfChipPkENCFF558DSF K562 HMBOX1 narrowPeak Transcription Factor ChIP-seq Peaks of HMBOX1 in K562 from ENCODE 3 (ENCFF558DSF) 1 586 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of HMBOX1 in K562 from ENCODE 3 (ENCFF558DSF)\ parent encTfChipPk off\ shortLabel K562 HMBOX1\ subGroups cellType=K562 factor=HMBOX1\ track encTfChipPkENCFF558DSF\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_ctss_rev Mcf7ToEgf1_00hr15minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_reverse 0 586 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep1.CNhs12420.13032-139E8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13032-139E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_tpm_rev Mcf7ToEgf1_00hr15minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_reverse 1 586 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep1.CNhs12420.13032-139E8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13032-139E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecH3k36me3StdPkRep1 SAEC H3K36M3 Pk 1 narrowPeak SAEC H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 586 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel SAEC H3K36M3 Pk 1\ subGroups view=Peaks factor=H3K36ME3 cellType=t3SAEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSaecH3k36me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseTh2HotspotsRep2 Th2 Ht 2 broadPeak Th2 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 586 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th2 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel Th2 Ht 2\ subGroups view=Hot cellType=t3TH02 treatment=None rep=rep2\ track wgEncodeUwDnaseTh2HotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549GrPcr1xDex5nmPkRep2 A549 GR DX5nM 2 broadPeak A549 GR DEX 5nM PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 587 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 GR DEX 5nM PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 GR DX5nM 2\ subGroups view=Peaks factor=GR cellType=t2A549 protocol=PCR1X treatment=DEX5NM rep=rep2\ track wgEncodeHaibTfbsA549GrPcr1xDex5nmPkRep2\ type broadPeak\ wgEncodeAwgTfbsUwHcpeCtcfUniPk HCPEpiC CTCF narrowPeak HCPEpiC TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 587 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCPEpiC TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HCPEpiC CTCF\ subGroups tier=a30 cellType=HCPEPIC factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHcpeCtcfUniPk\ wgEncodeCshlLongRnaSeqHsavecCellTotalAlnRep1 HSVEC cel tot A 1 bam HSaVEC whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 587 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSaVEC whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HSVEC cel tot A 1\ subGroups view=Alignments cellType=t3HSAVEC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHsavecCellTotalAlnRep1\ type bam\ wgEncodeSydhTfbsHuvecMaxStdSig HUVEC Max Std bigWig 0.000000 13383.500000 HUVEC Max Standard ChIP-seq Signal from ENCODE/SYDH 2 587 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Max Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HUVEC Max Std\ subGroups view=Signal factor=MAX cellType=t2HUVEC control=STD treatment=aNONE\ track wgEncodeSydhTfbsHuvecMaxStdSig\ type bigWig 0.000000 13383.500000\ encTfChipPkENCFF292JRY K562 HNRNPH1 narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPH1 in K562 from ENCODE 3 (ENCFF292JRY) 1 587 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPH1 in K562 from ENCODE 3 (ENCFF292JRY)\ parent encTfChipPk off\ shortLabel K562 HNRNPH1\ subGroups cellType=K562 factor=HNRNPH1\ track encTfChipPkENCFF292JRY\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_ctss_fwd Mcf7ToEgf1_00hr15minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_forward 0 587 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep2.CNhs12476.13098-140D2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13098-140D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_tpm_fwd Mcf7ToEgf1_00hr15minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_forward 1 587 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep2.CNhs12476.13098-140D2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13098-140D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecH3k36me3StdRawRep1 SAEC H3K36M3 Sg 1 bigWig 1.000000 3875.000000 SAEC H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 587 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SAEC H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SAEC H3K36M3 Sg 1\ subGroups view=zRSig factor=H3K36ME3 cellType=t3SAEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSaecH3k36me3StdRawRep1\ type bigWig 1.000000 3875.000000\ wgEncodeUwDnaseTh2PkRep2 Th2 Pk 2 narrowPeak Th2 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 587 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th2 DNaseI HS Peaks Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Th2 Pk 2\ subGroups view=Peaks cellType=t3TH02 treatment=None rep=rep2\ track wgEncodeUwDnaseTh2PkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549GrPcr1xDex5nmRawRep2 A549 GR DX5nM 2 bigWig 0.148563 218.201996 A549 GR DEX 5nM PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 588 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 GR DEX 5nM PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 GR DX5nM 2\ subGroups view=RawSignal factor=GR cellType=t2A549 protocol=PCR1X treatment=DEX5NM rep=rep2\ track wgEncodeHaibTfbsA549GrPcr1xDex5nmRawRep2\ type bigWig 0.148563 218.201996\ wgEncodeAwgTfbsUwHct116CtcfUniPk HCT-116 CTCF narrowPeak HCT-116 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 588 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HCT-116 CTCF\ subGroups tier=a30 cellType=HCT116 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHct116CtcfUniPk\ wgEncodeCshlLongRnaSeqHsavecCellTotalAlnRep2 HSVEC cel tot A 2 bam HSaVEC whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 588 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSaVEC whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HSVEC cel tot A 2\ subGroups view=Alignments cellType=t3HSAVEC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHsavecCellTotalAlnRep2\ type bam\ wgEncodeSydhTfbsHuvecPol2StdPk HUVEC Pol2 Std narrowPeak HUVEC Pol2 Standard ChIP-seq Peaks from ENCODE/SYDH 3 588 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC Pol2 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HUVEC Pol2 Std\ subGroups view=Peaks factor=POL2 cellType=t2HUVEC control=STD treatment=aNONE\ track wgEncodeSydhTfbsHuvecPol2StdPk\ type narrowPeak\ encTfChipPkENCFF777CWV K562 HNRNPK narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPK in K562 from ENCODE 3 (ENCFF777CWV) 1 588 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPK in K562 from ENCODE 3 (ENCFF777CWV)\ parent encTfChipPk off\ shortLabel K562 HNRNPK\ subGroups cellType=K562 factor=HNRNPK\ track encTfChipPkENCFF777CWV\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_ctss_rev Mcf7ToEgf1_00hr15minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_reverse 0 588 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep2.CNhs12476.13098-140D2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13098-140D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_tpm_rev Mcf7ToEgf1_00hr15minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_reverse 1 588 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep2.CNhs12476.13098-140D2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13098-140D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecH3k36me3StdHotspotsRep2 SAEC H3K36M3 Ht 2 broadPeak SAEC H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 588 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel SAEC H3K36M3 Ht 2\ subGroups view=Hot factor=H3K36ME3 cellType=t3SAEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSaecH3k36me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseTh2RawRep2 Th2 Sg 2 bigWig 1.000000 90802.000000 Th2 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 588 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th2 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Th2 Sg 2\ subGroups view=zRSig cellType=t3TH02 treatment=None rep=rep2\ track wgEncodeUwDnaseTh2RawRep2\ type bigWig 1.000000 90802.000000\ wgEncodeHaibTfbsA549GrPcr1xEtoh02RawRep1 A549 GR Eth PC1 1 bigWig 0.149611 237.731995 A549 GR EtOH PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 589 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 GR EtOH PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 GR Eth PC1 1\ subGroups view=RawSignal factor=GR cellType=t2A549 protocol=PCR1X treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549GrPcr1xEtoh02RawRep1\ type bigWig 0.149611 237.731995\ wgEncodeAwgTfbsHaibHct116Pol24h8V0416101UniPk HCT-116 POLR2A h narrowPeak HCT-116 TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis 1 589 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HCT-116 POLR2A h\ subGroups tier=a30 cellType=HCT116 factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHct116Pol24h8V0416101UniPk\ wgEncodeCshlLongRnaSeqHsavecCellTotalContigs HSVEC cel tot C bed 6 + HSaVEC whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 589 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSaVEC whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HSVEC cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3HSAVEC localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqHsavecCellTotalContigs\ type bed 6 +\ wgEncodeSydhTfbsHuvecPol2StdSig HUVEC Pol2 Std bigWig 0.000000 29937.699219 HUVEC Pol2 Standard ChIP-seq Signal from ENCODE/SYDH 2 589 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Pol2 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HUVEC Pol2 Std\ subGroups view=Signal factor=POL2 cellType=t2HUVEC control=STD treatment=aNONE\ track wgEncodeSydhTfbsHuvecPol2StdSig\ type bigWig 0.000000 29937.699219\ encTfChipPkENCFF010STZ K562 HNRNPL narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPL in K562 from ENCODE 3 (ENCFF010STZ) 1 589 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPL in K562 from ENCODE 3 (ENCFF010STZ)\ parent encTfChipPk off\ shortLabel K562 HNRNPL\ subGroups cellType=K562 factor=HNRNPL\ track encTfChipPkENCFF010STZ\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_ctss_fwd Mcf7ToEgf1_00hr15minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_forward 0 589 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep3.CNhs12704.13164-141B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13164-141B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_tpm_fwd Mcf7ToEgf1_00hr15minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_forward 1 589 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep3.CNhs12704.13164-141B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13164-141B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecH3k36me3StdPkRep2 SAEC H3K36M3 Pk 2 narrowPeak SAEC H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 589 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel SAEC H3K36M3 Pk 2\ subGroups view=Peaks factor=H3K36ME3 cellType=t3SAEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSaecH3k36me3StdPkRep2\ type narrowPeak\ wgEncodeUwDnaseTh2wb33676984HotspotsRep1 Th2 Wb984 Ht 1 broadPeak Th2 Wb33676984 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 589 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th2 Wb33676984 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel Th2 Wb984 Ht 1\ subGroups view=Hot cellType=t3TH02WB33676984 treatment=None rep=rep1\ track wgEncodeUwDnaseTh2wb33676984HotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549GrPcr1xEtoh02RawRep2 A549 GR Eth PC1 2 bigWig 0.146991 250.841003 A549 GR EtOH PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 590 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 GR EtOH PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 GR Eth PC1 2\ subGroups view=RawSignal factor=GR cellType=t2A549 protocol=PCR1X treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549GrPcr1xEtoh02RawRep2\ type bigWig 0.146991 250.841003\ wgEncodeAwgTfbsSydhHct116Pol2UcdUniPk HCT-116 POLR2A c narrowPeak HCT-116 TFBS Uniform Peaks of Pol2 from ENCODE/USC/Analysis 1 590 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 TFBS Uniform Peaks of Pol2 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HCT-116 POLR2A c\ subGroups tier=a30 cellType=HCT116 factor=POLR2A lab=USC\ track wgEncodeAwgTfbsSydhHct116Pol2UcdUniPk\ wgEncodeCshlLongRnaSeqHsavecCellTotalJunctions HSVEC cel tot J bed 6 + HSaVEC whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 590 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSaVEC whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HSVEC cel tot J\ subGroups view=Junctions cellType=t3HSAVEC localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHsavecCellTotalJunctions\ type bed 6 +\ wgEncodeSydhTfbsHuvecInputStdSig HUVEC Inpt Std bigWig 0.000000 14303.700195 HUVEC Input Standard ChIP-seq Signal from ENCODE/SYDH 2 590 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Input Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HUVEC Inpt Std\ subGroups view=Signal factor=ZZZINPUTSTD cellType=t2HUVEC control=STD treatment=aNONE\ track wgEncodeSydhTfbsHuvecInputStdSig\ type bigWig 0.000000 14303.700195\ encTfChipPkENCFF122QSN K562 HNRNPLL narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPLL in K562 from ENCODE 3 (ENCFF122QSN) 1 590 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPLL in K562 from ENCODE 3 (ENCFF122QSN)\ parent encTfChipPk off\ shortLabel K562 HNRNPLL\ subGroups cellType=K562 factor=HNRNPLL\ track encTfChipPkENCFF122QSN\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_ctss_rev Mcf7ToEgf1_00hr15minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_reverse 0 590 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep3.CNhs12704.13164-141B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13164-141B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_tpm_rev Mcf7ToEgf1_00hr15minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_reverse 1 590 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep3.CNhs12704.13164-141B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13164-141B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecH3k36me3StdRawRep2 SAEC H3K36M3 Sg 2 bigWig 1.000000 3634.000000 SAEC H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 590 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SAEC H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SAEC H3K36M3 Sg 2\ subGroups view=zRSig factor=H3K36ME3 cellType=t3SAEC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSaecH3k36me3StdRawRep2\ type bigWig 1.000000 3634.000000\ wgEncodeUwDnaseTh2wb33676984PkRep1 Th2 Wb984 Pk 1 narrowPeak Th2 Wb33676984 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 590 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th2 Wb33676984 DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Th2 Wb984 Pk 1\ subGroups view=Peaks cellType=t3TH02WB33676984 treatment=None rep=rep1\ track wgEncodeUwDnaseTh2wb33676984PkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549GrPcr2xEtoh02RawRep1 A549 GR Eth PC2 1 bigWig 0.156092 153.048004 A549 GR EtOH PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 591 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 GR EtOH PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 GR Eth PC2 1\ subGroups view=RawSignal factor=GR cellType=t2A549 protocol=PCR2X treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549GrPcr2xEtoh02RawRep1\ type bigWig 0.156092 153.048004\ wgEncodeAwgTfbsSydhHct116Tcf7l2UcdUniPk HCT-116 TCF7L2 narrowPeak HCT-116 TFBS Uniform Peaks of TCF7L2 from ENCODE/USC/Analysis 1 591 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 TFBS Uniform Peaks of TCF7L2 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HCT-116 TCF7L2\ subGroups tier=a30 cellType=HCT116 factor=TCF7L2 lab=USC\ track wgEncodeAwgTfbsSydhHct116Tcf7l2UcdUniPk\ wgEncodeCshlLongRnaSeqHsavecCellTotalMinusRep1 HSVEC cel tot - 1 bigWig 1.000000 1869311.000000 HSaVEC whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 591 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSaVEC whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HSVEC cel tot - 1\ subGroups view=MinusSignal cellType=t3HSAVEC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHsavecCellTotalMinusRep1\ type bigWig 1.000000 1869311.000000\ wgEncodeSydhTfbsHuvecInputUcdSig HUVEC Inpt UCD bigWig 0.000000 16949.099609 HUVEC Input UC Davis ChIP-seq Signal from ENCODE/SYDH 2 591 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Input UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HUVEC Inpt UCD\ subGroups view=Signal factor=ZZZINPUTUCD cellType=t2HUVEC control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHuvecInputUcdSig\ type bigWig 0.000000 16949.099609\ encTfChipPkENCFF768TJI K562 HNRNPUL1 narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPUL1 in K562 from ENCODE 3 (ENCFF768TJI) 1 591 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPUL1 in K562 from ENCODE 3 (ENCFF768TJI)\ parent encTfChipPk off\ shortLabel K562 HNRNPUL1\ subGroups cellType=K562 factor=HNRNPUL1\ track encTfChipPkENCFF768TJI\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_ctss_fwd Mcf7ToEgf1_00hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_forward 0 591 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep1.CNhs12421.13033-139E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13033-139E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_tpm_fwd Mcf7ToEgf1_00hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_forward 1 591 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep1.CNhs12421.13033-139E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13033-139E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSaecInputStdRawRep1 SAEC In Sg 1 bigWig 1.000000 8873.000000 SAEC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 591 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SAEC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SAEC In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3SAEC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSaecInputStdRawRep1\ type bigWig 1.000000 8873.000000\ wgEncodeUwDnaseTh2wb33676984RawRep1 Th2 Wb984 Sg 1 bigWig 1.000000 20176.000000 Th2 Wb33676984 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 591 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th2 Wb33676984 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Th2 Wb984 Sg 1\ subGroups view=zRSig cellType=t3TH02WB33676984 treatment=None rep=rep1\ track wgEncodeUwDnaseTh2wb33676984RawRep1\ type bigWig 1.000000 20176.000000\ wgEncodeHaibTfbsA549GrPcr2xEtoh02RawRep2 A549 GR Eth PC2 2 bigWig 0.163185 118.879997 A549 GR EtOH PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 592 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 GR EtOH PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 GR Eth PC2 2\ subGroups view=RawSignal factor=GR cellType=t2A549 protocol=PCR2X treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549GrPcr2xEtoh02RawRep2\ type bigWig 0.163185 118.879997\ wgEncodeAwgTfbsHaibHct116Yy1sc281V0416101UniPk HCT-116 YY1 narrowPeak HCT-116 TFBS Uniform Peaks of YY1_(SC-281) from ENCODE/HudsonAlpha/Analysis 1 592 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 TFBS Uniform Peaks of YY1_(SC-281) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HCT-116 YY1\ subGroups tier=a30 cellType=HCT116 factor=YY1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHct116Yy1sc281V0416101UniPk\ wgEncodeCshlLongRnaSeqHsavecCellTotalMinusRep2 HSVEC cel tot - 2 bigWig 1.000000 10007770.000000 HSaVEC whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 592 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSaVEC whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HSVEC cel tot - 2\ subGroups view=MinusSignal cellType=t3HSAVEC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHsavecCellTotalMinusRep2\ type bigWig 1.000000 10007770.000000\ wgEncodeSydhTfbsImr90CebpbIggrabPk IMR90 CBPB IgR narrowPeak IMR90 CEBPB IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 592 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 CEBPB IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel IMR90 CBPB IgR\ subGroups view=Peaks factor=CEBPB cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90CebpbIggrabPk\ type narrowPeak\ encTfChipPkENCFF886VSU K562 IKZF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in K562 from ENCODE 3 (ENCFF886VSU) 1 592 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in K562 from ENCODE 3 (ENCFF886VSU)\ parent encTfChipPk on\ shortLabel K562 IKZF1 1\ subGroups cellType=K562 factor=IKZF1\ track encTfChipPkENCFF886VSU\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_ctss_rev Mcf7ToEgf1_00hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_reverse 0 592 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep1.CNhs12421.13033-139E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13033-139E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_tpm_rev Mcf7ToEgf1_00hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_reverse 1 592 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep1.CNhs12421.13033-139E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13033-139E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSkmcH3k04me3StdHotspotsRep1 SKMC H3K4M3 Ht 1 broadPeak SKMC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 592 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SKMC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel SKMC H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3SKMC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSkmcH3k04me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseTh2wb54553204HotspotsRep1 Th2 Wb204 Ht 1 broadPeak Th2 Wb54553204 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 592 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th2 Wb54553204 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel Th2 Wb204 Ht 1\ subGroups view=Hot cellType=t3TH02WB54553204 treatment=None rep=rep1\ track wgEncodeUwDnaseTh2wb54553204HotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549JundV0416102Etoh02PkRep1 A549 JunD EtOH 1 broadPeak A549 JunD EtOH 0.02pct v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 593 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 JunD EtOH 0.02pct v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 JunD EtOH 1\ subGroups view=Peaks factor=JUND cellType=t2A549 protocol=V0416102 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549JundV0416102Etoh02PkRep1\ type broadPeak\ wgEncodeAwgTfbsHaibHct116Zbtb33V0416101UniPk HCT-116 ZBTB33 narrowPeak HCT-116 TFBS Uniform Peaks of ZBTB33 from ENCODE/HudsonAlpha/Analysis 1 593 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 TFBS Uniform Peaks of ZBTB33 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HCT-116 ZBTB33\ subGroups tier=a30 cellType=HCT116 factor=ZBTB33 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibHct116Zbtb33V0416101UniPk\ wgEncodeCshlLongRnaSeqHsavecCellTotalPlusRep1 HSVEC cel tot + 1 bigWig 1.000000 3392682.000000 HSaVEC whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 593 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSaVEC whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HSVEC cel tot + 1\ subGroups view=PlusSignal cellType=t3HSAVEC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHsavecCellTotalPlusRep1\ type bigWig 1.000000 3392682.000000\ wgEncodeSydhTfbsImr90CebpbIggrabSig IMR90 CBPB IgR bigWig 1.000000 57153.000000 IMR90 CEBPB IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 593 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 CEBPB IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel IMR90 CBPB IgR\ subGroups view=Signal factor=CEBPB cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90CebpbIggrabSig\ type bigWig 1.000000 57153.000000\ encTfChipPkENCFF968JVX K562 IKZF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in K562 from ENCODE 3 (ENCFF968JVX) 1 593 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in K562 from ENCODE 3 (ENCFF968JVX)\ parent encTfChipPk off\ shortLabel K562 IKZF1 2\ subGroups cellType=K562 factor=IKZF1\ track encTfChipPkENCFF968JVX\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_ctss_fwd Mcf7ToEgf1_00hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_forward 0 593 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep2.CNhs12477.13099-140D3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13099-140D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_tpm_fwd Mcf7ToEgf1_00hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_forward 1 593 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep2.CNhs12477.13099-140D3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13099-140D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSkmcH3k04me3StdPkRep1 SKMC H3K4M3 Pk 1 narrowPeak SKMC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 593 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SKMC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel SKMC H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3SKMC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSkmcH3k04me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseTh2wb54553204PkRep1 Th2 Wb204 Pk 1 narrowPeak Th2 Wb54553204 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 593 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th2 Wb54553204 DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Th2 Wb204 Pk 1\ subGroups view=Peaks cellType=t3TH02WB54553204 treatment=None rep=rep1\ track wgEncodeUwDnaseTh2wb54553204PkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549JundV0416102Etoh02RawRep1 A549 JunD EtOH 1 bigWig 0.222060 345.524994 A549 JunD EtOH v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 594 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 JunD EtOH v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 JunD EtOH 1\ subGroups view=RawSignal factor=JUND cellType=t2A549 protocol=V0416102 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549JundV0416102Etoh02RawRep1\ type bigWig 0.222060 345.524994\ wgEncodeAwgTfbsUwHeeCtcfUniPk HEEpiC CTCF narrowPeak HEEpiC TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 594 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEEpiC TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HEEpiC CTCF\ subGroups tier=a30 cellType=HEEPIC factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHeeCtcfUniPk\ wgEncodeCshlLongRnaSeqHsavecCellTotalPlusRep2 HSVEC cel tot + 2 bigWig 1.000000 7667168.000000 HSaVEC whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 594 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSaVEC whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HSVEC cel tot + 2\ subGroups view=PlusSignal cellType=t3HSAVEC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHsavecCellTotalPlusRep2\ type bigWig 1.000000 7667168.000000\ wgEncodeSydhTfbsImr90Chd1nb10060411IggrabPk IMR90 CHD1 IgR narrowPeak IMR90 CHD1 (NB100-60411) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 594 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 CHD1 (NB100-60411) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel IMR90 CHD1 IgR\ subGroups view=Peaks factor=CHD1NB10060411 cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90Chd1nb10060411IggrabPk\ type narrowPeak\ encTfChipPkENCFF909LKK K562 IRF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF909LKK) 1 594 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF909LKK)\ parent encTfChipPk off\ shortLabel K562 IRF1 1\ subGroups cellType=K562 factor=IRF1\ track encTfChipPkENCFF909LKK\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_ctss_rev Mcf7ToEgf1_00hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_reverse 0 594 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep2.CNhs12477.13099-140D3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13099-140D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_tpm_rev Mcf7ToEgf1_00hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_reverse 1 594 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep2.CNhs12477.13099-140D3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13099-140D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSkmcH3k04me3StdRawRep1 SKMC H3K4M3 Sg 1 bigWig 1.000000 1936.000000 SKMC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 594 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SKMC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SKMC H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3SKMC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSkmcH3k04me3StdRawRep1\ type bigWig 1.000000 1936.000000\ wgEncodeUwDnaseTh2wb54553204RawRep1 Th2 Wb204 Sg 1 bigWig 1.000000 28921.000000 Th2 Wb54553204 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 594 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th2 Wb54553204 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Th2 Wb204 Sg 1\ subGroups view=zRSig cellType=t3TH02WB54553204 treatment=None rep=rep1\ track wgEncodeUwDnaseTh2wb54553204RawRep1\ type bigWig 1.000000 28921.000000\ wgEncodeHaibTfbsA549JundV0416102Etoh02PkRep2 A549 JunD EtOH 2 broadPeak A549 JunD EtOH 0.02pct v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 595 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 JunD EtOH 0.02pct v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 JunD EtOH 2\ subGroups view=Peaks factor=JUND cellType=t2A549 protocol=V0416102 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549JundV0416102Etoh02PkRep2\ type broadPeak\ wgEncodeAwgTfbsUwHek293CtcfUniPk HEK293 CTCF narrowPeak HEK293 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 595 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HEK293 CTCF\ subGroups tier=a30 cellType=HEK293 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHek293CtcfUniPk\ wgEncodeCshlLongRnaSeqHsmmCellLongnonpolyaAlnRep1 HSMM cel pA- A 1 bam HSMM whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 595 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSMM whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HSMM cel pA- A 1\ subGroups view=Alignments cellType=t3HSMM localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHsmmCellLongnonpolyaAlnRep1\ type bam\ wgEncodeSydhTfbsImr90Chd1nb10060411IggrabSig IMR90 CHD1 IgR bigWig 1.000000 456.000000 IMR90 CHD1 (NB100-60411) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 595 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 CHD1 (NB100-60411) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel IMR90 CHD1 IgR\ subGroups view=Signal factor=CHD1NB10060411 cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90Chd1nb10060411IggrabSig\ type bigWig 1.000000 456.000000\ encTfChipPkENCFF908UIY K562 IRF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF908UIY) 1 595 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF908UIY)\ parent encTfChipPk off\ shortLabel K562 IRF1 2\ subGroups cellType=K562 factor=IRF1\ track encTfChipPkENCFF908UIY\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_ctss_fwd Mcf7ToEgf1_00hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_forward 0 595 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep3.CNhs12738.13165-141B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13165-141B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_tpm_fwd Mcf7ToEgf1_00hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_forward 1 595 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep3.CNhs12738.13165-141B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13165-141B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSkmcH3k04me3StdHotspotsRep2 SKMC H3K4M3 Ht 2 broadPeak SKMC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 595 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SKMC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel SKMC H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3SKMC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSkmcH3k04me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseTh17HotspotsRep1 Th17 Ht 1 broadPeak Th17 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 595 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th17 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel Th17 Ht 1\ subGroups view=Hot cellType=t3TH17 treatment=None rep=rep1\ track wgEncodeUwDnaseTh17HotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549JundV0416102Etoh02RawRep2 A549 JunD EtOH 2 bigWig 0.168205 364.584991 A549 JunD EtOH v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 596 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 JunD EtOH v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 JunD EtOH 2\ subGroups view=RawSignal factor=JUND cellType=t2A549 protocol=V0416102 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549JundV0416102Etoh02RawRep2\ type bigWig 0.168205 364.584991\ wgEncodeAwgTfbsSydhHek293Elk4UcdUniPk HEK293 ELK4 narrowPeak HEK293 TFBS Uniform Peaks of ELK4 from ENCODE/USC/Analysis 1 596 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 TFBS Uniform Peaks of ELK4 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HEK293 ELK4\ subGroups tier=a30 cellType=HEK293 factor=ELK4 lab=USC\ track wgEncodeAwgTfbsSydhHek293Elk4UcdUniPk\ wgEncodeCshlLongRnaSeqHsmmCellLongnonpolyaAlnRep2 HSMM cel pA- A 2 bam HSMM whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 596 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSMM whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HSMM cel pA- A 2\ subGroups view=Alignments cellType=t3HSMM localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHsmmCellLongnonpolyaAlnRep2\ type bam\ wgEncodeSydhTfbsImr90Corestsc30189IggrabPk IMR90 COREST IgR narrowPeak IMR90 COREST (SC-30189) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 596 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 COREST (SC-30189) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel IMR90 COREST IgR\ subGroups view=Peaks factor=CORESTSC30189 cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90Corestsc30189IggrabPk\ type narrowPeak\ encTfChipPkENCFF730RUF K562 IRF1 3 narrowPeak Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF730RUF) 1 596 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF730RUF)\ parent encTfChipPk off\ shortLabel K562 IRF1 3\ subGroups cellType=K562 factor=IRF1\ track encTfChipPkENCFF730RUF\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_ctss_rev Mcf7ToEgf1_00hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_reverse 0 596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep3.CNhs12738.13165-141B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13165-141B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_tpm_rev Mcf7ToEgf1_00hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_reverse 1 596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep3.CNhs12738.13165-141B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13165-141B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSkmcH3k04me3StdPkRep2 SKMC H3K4M3 Pk 2 narrowPeak SKMC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 596 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SKMC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel SKMC H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3SKMC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSkmcH3k04me3StdPkRep2\ type narrowPeak\ wgEncodeUwDnaseTh17PkRep1 Th17 Pk 1 narrowPeak Th17 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 596 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Th17 DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Th17 Pk 1\ subGroups view=Peaks cellType=t3TH17 treatment=None rep=rep1\ track wgEncodeUwDnaseTh17PkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549MaxV0422111PkRep1 A549 Max V11 1 broadPeak A549 Max v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 597 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 Max v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 Max V11 1\ subGroups view=Peaks factor=MAX cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsA549MaxV0422111PkRep1\ type broadPeak\ wgEncodeAwgTfbsSydhHek293Kap1UcdUniPk HEK293 KAP1 narrowPeak HEK293 TFBS Uniform Peaks of KAP1 from ENCODE/USC/Analysis 1 597 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 TFBS Uniform Peaks of KAP1 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HEK293 KAP1\ subGroups tier=a30 cellType=HEK293 factor=KAP1 lab=USC\ track wgEncodeAwgTfbsSydhHek293Kap1UcdUniPk\ wgEncodeCshlLongRnaSeqHsmmCellPamContigs HSMM cel pA- C bed 6 + HSMM whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 597 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSMM whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HSMM cel pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3HSMM localization=CELL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqHsmmCellPamContigs\ type bed 6 +\ wgEncodeSydhTfbsImr90Corestsc30189IggrabSig IMR90 COREST IgR bigWig 1.000000 448.000000 IMR90 COREST (SC-30189) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 597 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 COREST (SC-30189) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel IMR90 COREST IgR\ subGroups view=Signal factor=CORESTSC30189 cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90Corestsc30189IggrabSig\ type bigWig 1.000000 448.000000\ encTfChipPkENCFF284VUQ K562 IRF1 4 narrowPeak Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF284VUQ) 1 597 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF284VUQ)\ parent encTfChipPk off\ shortLabel K562 IRF1 4\ subGroups cellType=K562 factor=IRF1\ track encTfChipPkENCFF284VUQ\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_ctss_fwd Mcf7ToEgf1_00hr45minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_forward 0 597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep1.CNhs12422.13034-139F1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13034-139F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_tpm_fwd Mcf7ToEgf1_00hr45minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_forward 1 597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep1.CNhs12422.13034-139F1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13034-139F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSkmcH3k04me3StdRawRep2 SKMC H3K4M3 Sg 2 bigWig 1.000000 2445.000000 SKMC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 597 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SKMC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SKMC H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3SKMC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSkmcH3k04me3StdRawRep2\ type bigWig 1.000000 2445.000000\ wgEncodeUwDnaseTh17RawRep1 Th17 Sg 1 bigWig 1.000000 12923.000000 Th17 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 597 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Th17 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Th17 Sg 1\ subGroups view=zRSig cellType=t3TH17 treatment=None rep=rep1\ track wgEncodeUwDnaseTh17RawRep1\ type bigWig 1.000000 12923.000000\ wgEncodeHaibTfbsA549MaxV0422111RawRep1 A549 Max V11 1 bigWig 1.000000 6607.000000 A549 Max v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 598 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Max v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 Max V11 1\ subGroups view=RawSignal factor=MAX cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsA549MaxV0422111RawRep1\ type bigWig 1.000000 6607.000000\ wgEncodeAwgTfbsSydhHek293Pol2UniPk HEK293 POLR2A narrowPeak HEK293 TFBS Uniform Peaks of Pol2 from ENCODE/Yale/Analysis 1 598 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 TFBS Uniform Peaks of Pol2 from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HEK293 POLR2A\ subGroups tier=a30 cellType=HEK293 factor=POLR2A lab=Yale\ track wgEncodeAwgTfbsSydhHek293Pol2UniPk\ wgEncodeCshlLongRnaSeqHsmmCellPamJunctions HSMM cel pA- J bed 6 + HSMM whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 598 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSMM whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HSMM cel pA- J\ subGroups view=Junctions cellType=t3HSMM localization=CELL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHsmmCellPamJunctions\ type bed 6 +\ wgEncodeSydhTfbsImr90CtcfbIggrabPk IMR90 CTCF IgR narrowPeak IMR90 CTCF IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 598 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 CTCF IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel IMR90 CTCF IgR\ subGroups view=Peaks factor=CTCFb cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90CtcfbIggrabPk\ type narrowPeak\ encTfChipPkENCFF384YDT K562 IRF2 narrowPeak Transcription Factor ChIP-seq Peaks of IRF2 in K562 from ENCODE 3 (ENCFF384YDT) 1 598 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of IRF2 in K562 from ENCODE 3 (ENCFF384YDT)\ parent encTfChipPk off\ shortLabel K562 IRF2\ subGroups cellType=K562 factor=IRF2\ track encTfChipPkENCFF384YDT\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_ctss_rev Mcf7ToEgf1_00hr45minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_reverse 0 598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep1.CNhs12422.13034-139F1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13034-139F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_tpm_rev Mcf7ToEgf1_00hr45minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_reverse 1 598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep1.CNhs12422.13034-139F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13034-139F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSkmcInputStdRawRep1 SKMC In Sg 1 bigWig 1.000000 16362.000000 SKMC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 598 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SKMC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SKMC In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3SKMC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSkmcInputStdRawRep1\ type bigWig 1.000000 16362.000000\ wgEncodeUwDnaseTregwb78495824HotspotsRep1 Treg Wb824 Ht 1 broadPeak Treg Wb78495824 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 598 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Treg Wb78495824 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel Treg Wb824 Ht 1\ subGroups view=Hot cellType=t3TREGWB78495824 treatment=None rep=rep1\ track wgEncodeUwDnaseTregwb78495824HotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549MaxV0422111PkRep2 A549 Max V11 2 broadPeak A549 Max v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 599 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 Max v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 Max V11 2\ subGroups view=Peaks factor=MAX cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsA549MaxV0422111PkRep2\ type broadPeak\ wgEncodeAwgTfbsSydhHek293Tcf7l2UcdUniPk HEK293 TCF7L2 narrowPeak HEK293 TFBS Uniform Peaks of TCF7L2 from ENCODE/USC/Analysis 1 599 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 TFBS Uniform Peaks of TCF7L2 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HEK293 TCF7L2\ subGroups tier=a30 cellType=HEK293 factor=TCF7L2 lab=USC\ track wgEncodeAwgTfbsSydhHek293Tcf7l2UcdUniPk\ wgEncodeCshlLongRnaSeqHsmmCellLongnonpolyaMinusRawSigRep1 HSMM cel pA- - 1 bigWig 1.000000 4754829.000000 HSMM whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 599 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSMM whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HSMM cel pA- - 1\ subGroups view=MinusSignal cellType=t3HSMM localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHsmmCellLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 4754829.000000\ wgEncodeSydhTfbsImr90CtcfbIggrabSig IMR90 CTCF IgR bigWig 1.000000 15006.000000 IMR90 CTCF IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 599 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 CTCF IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel IMR90 CTCF IgR\ subGroups view=Signal factor=CTCFb cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90CtcfbIggrabSig\ type bigWig 1.000000 15006.000000\ encTfChipPkENCFF417QAJ K562 JUN 1 narrowPeak Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF417QAJ) 1 599 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF417QAJ)\ parent encTfChipPk off\ shortLabel K562 JUN 1\ subGroups cellType=K562 factor=JUN\ track encTfChipPkENCFF417QAJ\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_ctss_fwd Mcf7ToEgf1_00hr45minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_forward 0 599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep2.CNhs12478.13100-140D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13100-140D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_tpm_fwd Mcf7ToEgf1_00hr45minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_forward 1 599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep2.CNhs12478.13100-140D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13100-140D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknmcH3k04me3StdHotspotsRep1 SKNMC H3K4M3 Ht 1 broadPeak SK-N-MC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 599 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-MC H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel SKNMC H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3SKNMC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSknmcH3k04me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseTregwb78495824PkRep1 Treg Wb824 Pk 1 narrowPeak Treg Wb78495824 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 599 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Treg Wb78495824 DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Treg Wb824 Pk 1\ subGroups view=Peaks cellType=t3TREGWB78495824 treatment=None rep=rep1\ track wgEncodeUwDnaseTregwb78495824PkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549MaxV0422111RawRep2 A549 Max V11 2 bigWig 1.000000 3733.000000 A549 Max v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 600 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Max v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 Max V11 2\ subGroups view=RawSignal factor=MAX cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsA549MaxV0422111RawRep2\ type bigWig 1.000000 3733.000000\ wgEncodeAwgTfbsSydhHek293tZnf263UcdUniPk HEK293TREx ZNF263 narrowPeak HEK293-T-REx TFBS Uniform Peaks of ZNF263 from ENCODE/USC/Analysis 1 600 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293-T-REx TFBS Uniform Peaks of ZNF263 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HEK293TREx ZNF263\ subGroups tier=a30 cellType=HEK293TREX factor=ZNF263 lab=USC\ track wgEncodeAwgTfbsSydhHek293tZnf263UcdUniPk\ wgEncodeCshlLongRnaSeqHsmmCellLongnonpolyaMinusRawSigRep2 HSMM cel pA- - 2 bigWig 1.000000 4422711.000000 HSMM whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 600 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSMM whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HSMM cel pA- - 2\ subGroups view=MinusSignal cellType=t3HSMM localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHsmmCellLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 4422711.000000\ wgEncodeSydhTfbsImr90MafkIggrabPk IMR90 MafK IgR narrowPeak IMR90 MafK IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 600 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 MafK IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel IMR90 MafK IgR\ subGroups view=Peaks factor=MAFK cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90MafkIggrabPk\ type narrowPeak\ encTfChipPkENCFF077UYM K562 JUN 2 narrowPeak Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF077UYM) 1 600 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF077UYM)\ parent encTfChipPk off\ shortLabel K562 JUN 2\ subGroups cellType=K562 factor=JUN\ track encTfChipPkENCFF077UYM\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_ctss_rev Mcf7ToEgf1_00hr45minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_reverse 0 600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep2.CNhs12478.13100-140D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13100-140D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_tpm_rev Mcf7ToEgf1_00hr45minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_reverse 1 600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep2.CNhs12478.13100-140D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13100-140D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknmcH3k04me3StdPkRep1 SKNMC H3K4M3 Pk 1 narrowPeak SK-N-MC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 600 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-MC H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel SKNMC H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3SKNMC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSknmcH3k04me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseTregwb78495824RawRep1 Treg Wb824 Sg 1 bigWig 1.000000 31020.000000 Treg Wb78495824 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 600 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Treg Wb78495824 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Treg Wb824 Sg 1\ subGroups view=zRSig cellType=t3TREGWB78495824 treatment=None rep=rep1\ track wgEncodeUwDnaseTregwb78495824RawRep1\ type bigWig 1.000000 31020.000000\ wgEncodeHaibTfbsA549NrsfV0422111Etoh02PkRep1 A549 NRSF EtOH 1 broadPeak A549 NRSF EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 601 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 NRSF EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 NRSF EtOH 1\ subGroups view=Peaks factor=NRSF cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549NrsfV0422111Etoh02PkRep1\ type broadPeak\ wgEncodeAwgTfbsUwHffCtcfUniPk HFF CTCF narrowPeak HFF TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 601 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HFF CTCF\ subGroups tier=a30 cellType=HFF factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHffCtcfUniPk\ wgEncodeCshlLongRnaSeqHsmmCellLongnonpolyaPlusRawSigRep1 HSMM cel pA- + 1 bigWig 1.000000 4651964.000000 HSMM whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 601 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSMM whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HSMM cel pA- + 1\ subGroups view=PlusSignal cellType=t3HSMM localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHsmmCellLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 4651964.000000\ wgEncodeSydhTfbsImr90MafkIggrabSig IMR90 MafK IgR bigWig 1.000000 17706.000000 IMR90 MafK IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 601 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 MafK IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel IMR90 MafK IgR\ subGroups view=Signal factor=MAFK cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90MafkIggrabSig\ type bigWig 1.000000 17706.000000\ encTfChipPkENCFF192BTP K562 JUN 3 narrowPeak Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF192BTP) 1 601 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF192BTP)\ parent encTfChipPk off\ shortLabel K562 JUN 3\ subGroups cellType=K562 factor=JUN\ track encTfChipPkENCFF192BTP\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_ctss_fwd Mcf7ToEgf1_00hr45minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_forward 0 601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep3.CNhs12739.13166-141B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13166-141B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_tpm_fwd Mcf7ToEgf1_00hr45minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_forward 1 601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep3.CNhs12739.13166-141B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13166-141B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknmcH3k04me3StdRawRep1 SKNMC H3K4M3 Sg 1 bigWig 1.000000 2362.000000 SK-N-MC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 601 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-MC H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SKNMC H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3SKNMC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSknmcH3k04me3StdRawRep1\ type bigWig 1.000000 2362.000000\ wgEncodeUwDnaseTregwb83319432HotspotsRep1 Treg Wb432 Ht 1 broadPeak Treg Wb83319432 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 601 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Treg Wb83319432 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewHot off\ shortLabel Treg Wb432 Ht 1\ subGroups view=Hot cellType=t3TREGWB83319432 treatment=None rep=rep1\ track wgEncodeUwDnaseTregwb83319432HotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549NrsfV0422111Etoh02RawRep1 A549 NRSF EtOH 1 bigWig 0.137142 276.820007 A549 NRSF EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 602 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 NRSF EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 NRSF EtOH 1\ subGroups view=RawSignal factor=NRSF cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549NrsfV0422111Etoh02RawRep1\ type bigWig 0.137142 276.820007\ wgEncodeAwgTfbsUwHffmycCtcfUniPk HFF-Myc CTCF narrowPeak HFF-Myc TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 602 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HFF-Myc TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HFF-Myc CTCF\ subGroups tier=a30 cellType=HFFMYC factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHffmycCtcfUniPk\ wgEncodeCshlLongRnaSeqHsmmCellLongnonpolyaPlusRawSigRep2 HSMM cel pA- + 2 bigWig 1.000000 5108249.000000 HSMM whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 602 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSMM whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HSMM cel pA- + 2\ subGroups view=PlusSignal cellType=t3HSMM localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHsmmCellLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 5108249.000000\ wgEncodeSydhTfbsImr90Mazab85725IggrabPk IMR90 MAZ IgR narrowPeak IMR90 MAZ (ab85725) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 602 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 MAZ (ab85725) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel IMR90 MAZ IgR\ subGroups view=Peaks factor=MAZAB85725 cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90Mazab85725IggrabPk\ type narrowPeak\ encTfChipPkENCFF573GQX K562 JUN 4 narrowPeak Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF573GQX) 1 602 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF573GQX)\ parent encTfChipPk off\ shortLabel K562 JUN 4\ subGroups cellType=K562 factor=JUN\ track encTfChipPkENCFF573GQX\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_ctss_rev Mcf7ToEgf1_00hr45minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_reverse 0 602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep3.CNhs12739.13166-141B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13166-141B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_tpm_rev Mcf7ToEgf1_00hr45minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_reverse 1 602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep3.CNhs12739.13166-141B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13166-141B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknmcH3k04me3StdHotspotsRep2 SKNMC H3K4M3 Ht 2 broadPeak SK-N-MC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 602 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-MC H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel SKNMC H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3SKNMC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSknmcH3k04me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseTregwb83319432PkRep1 Treg Wb432 Pk 1 narrowPeak Treg Wb83319432 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 602 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Treg Wb83319432 DNaseI HS Peaks Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel Treg Wb432 Pk 1\ subGroups view=Peaks cellType=t3TREGWB83319432 treatment=None rep=rep1\ track wgEncodeUwDnaseTregwb83319432PkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549NrsfV0422111Etoh02PkRep2 A549 NRSF EtOH 2 broadPeak A549 NRSF EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 603 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 NRSF EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 NRSF EtOH 2\ subGroups view=Peaks factor=NRSF cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549NrsfV0422111Etoh02PkRep2\ type broadPeak\ wgEncodeAwgTfbsUwHl60CtcfUniPk HL-60 CTCF narrowPeak HL-60 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 603 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HL-60 CTCF\ subGroups tier=a30 cellType=HL60 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHl60CtcfUniPk\ wgEncodeCshlLongRnaSeqHsmmCellPapAlnRep1 HSMM cel pA+ A 1 bam HSMM whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 603 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSMM whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HSMM cel pA+ A 1\ subGroups view=Alignments cellType=t3HSMM localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHsmmCellPapAlnRep1\ type bam\ wgEncodeSydhTfbsImr90Mazab85725IggrabSig IMR90 MAZ IgR bigWig 1.000000 416.000000 IMR90 MAZ (ab85725) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 603 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 MAZ (ab85725) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel IMR90 MAZ IgR\ subGroups view=Signal factor=MAZAB85725 cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90Mazab85725IggrabSig\ type bigWig 1.000000 416.000000\ encTfChipPkENCFF629BFI K562 JUN 5 narrowPeak Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF629BFI) 1 603 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF629BFI)\ parent encTfChipPk off\ shortLabel K562 JUN 5\ subGroups cellType=K562 factor=JUN\ track encTfChipPkENCFF629BFI\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_ctss_fwd Mcf7ToEgf1_01hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_forward 0 603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep1.CNhs12423.13035-139F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13035-139F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_tpm_fwd Mcf7ToEgf1_01hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_forward 1 603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep1.CNhs12423.13035-139F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13035-139F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknmcH3k04me3StdPkRep2 SKNMC H3K4M3 Pk 2 narrowPeak SK-N-MC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 603 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-MC H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel SKNMC H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3SKNMC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSknmcH3k04me3StdPkRep2\ type narrowPeak\ wgEncodeUwDnaseTregwb83319432RawRep1 Treg Wb432 Sg 1 bigWig 1.000000 73810.000000 Treg Wb83319432 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 603 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Treg Wb83319432 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel Treg Wb432 Sg 1\ subGroups view=zRSig cellType=t3TREGWB83319432 treatment=None rep=rep1\ track wgEncodeUwDnaseTregwb83319432RawRep1\ type bigWig 1.000000 73810.000000\ wgEncodeHaibTfbsA549NrsfV0422111Etoh02RawRep2 A549 NRSF EtOH 2 bigWig 0.146834 428.864014 A549 NRSF EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 604 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 NRSF EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 NRSF EtOH 2\ subGroups view=RawSignal factor=NRSF cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549NrsfV0422111Etoh02RawRep2\ type bigWig 0.146834 428.864014\ wgEncodeAwgTfbsBroadHmecCtcfUniPk HMEC CTCF b narrowPeak HMEC TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis 1 604 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HMEC CTCF b\ subGroups tier=a30 cellType=HMEC factor=CTCF lab=Broad\ track wgEncodeAwgTfbsBroadHmecCtcfUniPk\ wgEncodeCshlLongRnaSeqHsmmCellPapAlnRep2 HSMM cel pA+ A 2 bam HSMM whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 604 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSMM whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HSMM cel pA+ A 2\ subGroups view=Alignments cellType=t3HSMM localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHsmmCellPapAlnRep2\ type bam\ wgEncodeSydhTfbsImr90Mxi1IggrabPk IMR90 Mxi1 IgR narrowPeak IMR90 Mxi1 (AF4185) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 604 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 Mxi1 (AF4185) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel IMR90 Mxi1 IgR\ subGroups view=Peaks factor=MXI1 cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90Mxi1IggrabPk\ type narrowPeak\ encTfChipPkENCFF426DUB K562 JUNB narrowPeak Transcription Factor ChIP-seq Peaks of JUNB in K562 from ENCODE 3 (ENCFF426DUB) 1 604 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of JUNB in K562 from ENCODE 3 (ENCFF426DUB)\ parent encTfChipPk off\ shortLabel K562 JUNB\ subGroups cellType=K562 factor=JUNB\ track encTfChipPkENCFF426DUB\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_ctss_rev Mcf7ToEgf1_01hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_reverse 0 604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep1.CNhs12423.13035-139F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13035-139F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_tpm_rev Mcf7ToEgf1_01hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_reverse 1 604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep1.CNhs12423.13035-139F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13035-139F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknmcH3k04me3StdRawRep2 SKNMC H3K4M3 Sg 2 bigWig 1.000000 5544.000000 SK-N-MC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 604 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-MC H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SKNMC H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3SKNMC rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSknmcH3k04me3StdRawRep2\ type bigWig 1.000000 5544.000000\ wgEncodeUwDnaseWerirb1HotspotsRep1 WERI-Rb-1 Ht 1 broadPeak WERI-Rb-1 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 604 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WERI-Rb-1 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel WERI-Rb-1 Ht 1\ subGroups view=Hot cellType=t3WERIRB1 rep=rep1 treatment=None\ track wgEncodeUwDnaseWerirb1HotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549P300V0422111Etoh02PkRep1 A549 p300 EtOH 1 broadPeak A549 p300 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 605 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 p300 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 p300 EtOH 1\ subGroups view=Peaks factor=P300 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549P300V0422111Etoh02PkRep1\ type broadPeak\ wgEncodeAwgTfbsUwHmecCtcfUniPk HMEC CTCF w narrowPeak HMEC TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 605 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HMEC CTCF w\ subGroups tier=a30 cellType=HMEC factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHmecCtcfUniPk\ wgEncodeCshlLongRnaSeqHsmmCellPapContigs HSMM cel pA+ C bed 6 + HSMM whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 605 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSMM whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HSMM cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3HSMM localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqHsmmCellPapContigs\ type bed 6 +\ wgEncodeSydhTfbsImr90Mxi1IggrabSig IMR90 Mxi1 IgR bigWig 1.000000 456.000000 IMR90 Mxi1 (AF4185) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 605 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 Mxi1 (AF4185) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel IMR90 Mxi1 IgR\ subGroups view=Signal factor=MXI1 cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90Mxi1IggrabSig\ type bigWig 1.000000 456.000000\ encTfChipPkENCFF337DKJ K562 JUND narrowPeak Transcription Factor ChIP-seq Peaks of JUND in K562 from ENCODE 3 (ENCFF337DKJ) 1 605 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of JUND in K562 from ENCODE 3 (ENCFF337DKJ)\ parent encTfChipPk off\ shortLabel K562 JUND\ subGroups cellType=K562 factor=JUND\ track encTfChipPkENCFF337DKJ\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_ctss_fwd Mcf7ToEgf1_01hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_forward 0 605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep2.CNhs12479.13101-140D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13101-140D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_tpm_fwd Mcf7ToEgf1_01hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_forward 1 605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep2.CNhs12479.13101-140D5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13101-140D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknmcInputStdRawRep1 SKNMC In Sg 1 bigWig 1.000000 15364.000000 SK-N-MC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 605 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-MC Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SKNMC In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3SKNMC rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSknmcInputStdRawRep1\ type bigWig 1.000000 15364.000000\ wgEncodeUwDnaseWerirb1PkRep1 WERI-Rb-1 Pk 1 narrowPeak WERI-Rb-1 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 605 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WERI-Rb-1 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel WERI-Rb-1 Pk 1\ subGroups view=Peaks cellType=t3WERIRB1 rep=rep1 treatment=None\ track wgEncodeUwDnaseWerirb1PkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549P300V0422111Etoh02RawRep1 A549 p300 EtOH 1 bigWig 0.152576 197.319000 A549 p300 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 606 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 p300 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 p300 EtOH 1\ subGroups view=RawSignal factor=P300 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549P300V0422111Etoh02RawRep1\ type bigWig 0.152576 197.319000\ wgEncodeAwgTfbsBroadHmecEzh239875UniPk HMEC EZH2 narrowPeak HMEC TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis 1 606 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMEC TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HMEC EZH2\ subGroups tier=a30 cellType=HMEC factor=EZH2 lab=Broad\ track wgEncodeAwgTfbsBroadHmecEzh239875UniPk\ wgEncodeCshlLongRnaSeqHsmmCellPapJunctions HSMM cel pA+ J bed 6 + HSMM whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 606 0 0 0 127 127 127 0 0 0 expression 1 longLabel HSMM whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HSMM cel pA+ J\ subGroups view=Junctions cellType=t3HSMM localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHsmmCellPapJunctions\ type bed 6 +\ wgEncodeSydhTfbsImr90Pol2IggrabPk IMR90 Pol2 IgR narrowPeak IMR90 Pol2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 606 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 Pol2 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel IMR90 Pol2 IgR\ subGroups view=Peaks factor=POL2 cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90Pol2IggrabPk\ type narrowPeak\ encTfChipPkENCFF185GBT K562 KAT2B narrowPeak Transcription Factor ChIP-seq Peaks of KAT2B in K562 from ENCODE 3 (ENCFF185GBT) 1 606 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of KAT2B in K562 from ENCODE 3 (ENCFF185GBT)\ parent encTfChipPk off\ shortLabel K562 KAT2B\ subGroups cellType=K562 factor=KAT2B\ track encTfChipPkENCFF185GBT\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_ctss_rev Mcf7ToEgf1_01hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_reverse 0 606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep2.CNhs12479.13101-140D5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13101-140D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_tpm_rev Mcf7ToEgf1_01hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_reverse 1 606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep2.CNhs12479.13101-140D5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13101-140D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k4me3StdHotspotsRep1 SKRA H3K4M3 Ht 1 broadPeak SK-N-SH_RA H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 606 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel SKRA H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3SKNSHRA rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k4me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseWerirb1RawRep1 WERI-Rb-1 Sg 1 bigWig 1.000000 22121.000000 WERI-Rb-1 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 606 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WERI-Rb-1 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel WERI-Rb-1 Sg 1\ subGroups view=zRSig cellType=t3WERIRB1 rep=rep1 treatment=None\ track wgEncodeUwDnaseWerirb1RawRep1\ type bigWig 1.000000 22121.000000\ wgEncodeHaibTfbsA549P300V0422111Etoh02PkRep2 A549 p300 EtOH 2 broadPeak A549 p300 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 607 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 p300 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 p300 EtOH 2\ subGroups view=Peaks factor=P300 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549P300V0422111Etoh02PkRep2\ type broadPeak\ wgEncodeAwgTfbsUwHmfCtcfUniPk HMF CTCF narrowPeak HMF TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 607 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HMF TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HMF CTCF\ subGroups tier=a30 cellType=HMF factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHmfCtcfUniPk\ wgEncodeCshlLongRnaSeqHsmmCellPapMinusRawSigRep1 HSMM cel pA+ - 1 bigWig 1.000000 346917.000000 HSMM whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 607 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSMM whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HSMM cel pA+ - 1\ subGroups view=MinusSignal cellType=t3HSMM localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHsmmCellPapMinusRawSigRep1\ type bigWig 1.000000 346917.000000\ wgEncodeSydhTfbsImr90Pol2IggrabSig IMR90 Pol2 IgR bigWig 1.000000 20680.000000 IMR90 Pol2 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 607 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 Pol2 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel IMR90 Pol2 IgR\ subGroups view=Signal factor=POL2 cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90Pol2IggrabSig\ type bigWig 1.000000 20680.000000\ encTfChipPkENCFF772QPO K562 KAT8 narrowPeak Transcription Factor ChIP-seq Peaks of KAT8 in K562 from ENCODE 3 (ENCFF772QPO) 1 607 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of KAT8 in K562 from ENCODE 3 (ENCFF772QPO)\ parent encTfChipPk off\ shortLabel K562 KAT8\ subGroups cellType=K562 factor=KAT8\ track encTfChipPkENCFF772QPO\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_ctss_fwd Mcf7ToEgf1_01hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_forward 0 607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep3.CNhs12705.13167-141B8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13167-141B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_tpm_fwd Mcf7ToEgf1_01hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_forward 1 607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep3.CNhs12705.13167-141B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13167-141B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k4me3StdPkRep1 SKRA H3K4M3 Pk 1 narrowPeak SK-N-SH_RA H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 607 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel SKRA H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3SKNSHRA rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k4me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseWerirb1HotspotsRep2 WERI-Rb-1 Ht 2 broadPeak WERI-Rb-1 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 607 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WERI-Rb-1 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel WERI-Rb-1 Ht 2\ subGroups view=Hot cellType=t3WERIRB1 rep=rep2 treatment=None\ track wgEncodeUwDnaseWerirb1HotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549P300V0422111Etoh02RawRep2 A549 p300 EtOH 2 bigWig 0.164163 196.009995 A549 p300 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 608 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 p300 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 p300 EtOH 2\ subGroups view=RawSignal factor=P300 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549P300V0422111Etoh02RawRep2\ type bigWig 0.164163 196.009995\ wgEncodeAwgTfbsUwHpafCtcfUniPk HPAF CTCF narrowPeak HPAF TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 608 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPAF TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HPAF CTCF\ subGroups tier=a30 cellType=HPAF factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHpafCtcfUniPk\ wgEncodeCshlLongRnaSeqHsmmCellPapMinusRawSigRep2 HSMM cel pA+ - 2 bigWig 1.000000 377785.000000 HSMM whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 608 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSMM whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HSMM cel pA+ - 2\ subGroups view=MinusSignal cellType=t3HSMM localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHsmmCellPapMinusRawSigRep2\ type bigWig 1.000000 377785.000000\ wgEncodeSydhTfbsImr90Rad21IggrabPk IMR90 Rad2 IgR narrowPeak IMR90 Rad21 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 608 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 Rad21 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel IMR90 Rad2 IgR\ subGroups view=Peaks factor=RAD21 cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90Rad21IggrabPk\ type narrowPeak\ encTfChipPkENCFF738WCE K562 KDM1A 1 narrowPeak Transcription Factor ChIP-seq Peaks of KDM1A in K562 from ENCODE 3 (ENCFF738WCE) 1 608 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of KDM1A in K562 from ENCODE 3 (ENCFF738WCE)\ parent encTfChipPk off\ shortLabel K562 KDM1A 1\ subGroups cellType=K562 factor=KDM1A\ track encTfChipPkENCFF738WCE\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_ctss_rev Mcf7ToEgf1_01hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_reverse 0 608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep3.CNhs12705.13167-141B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13167-141B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_tpm_rev Mcf7ToEgf1_01hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_reverse 1 608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep3.CNhs12705.13167-141B8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13167-141B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k4me3StdRawRep1 SKRA H3K4M3 Sg 1 bigWig 1.000000 1354.000000 SK-N-SH_RA H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 608 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH_RA H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SKRA H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3SKNSHRA rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k4me3StdRawRep1\ type bigWig 1.000000 1354.000000\ wgEncodeUwDnaseWerirb1PkRep2 WERI-Rb-1 Pk 2 narrowPeak WERI-Rb-1 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 608 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WERI-Rb-1 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel WERI-Rb-1 Pk 2\ subGroups view=Peaks cellType=t3WERIRB1 rep=rep2 treatment=None\ track wgEncodeUwDnaseWerirb1PkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549Pbx3V0422111PkRep1 A549 PBx3 V11 1 broadPeak A549 PBx3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 609 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 PBx3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 PBx3 V11 1\ subGroups view=Peaks factor=PBX3 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsA549Pbx3V0422111PkRep1\ type broadPeak\ wgEncodeAwgTfbsUwHpfCtcfUniPk HPF CTCF narrowPeak HPF TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 609 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HPF TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HPF CTCF\ subGroups tier=a30 cellType=HPF factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHpfCtcfUniPk\ wgEncodeCshlLongRnaSeqHsmmCellPapPlusRawSigRep1 HSMM cel pA+ + 1 bigWig 1.000000 294373.000000 HSMM whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 609 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSMM whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HSMM cel pA+ + 1\ subGroups view=PlusSignal cellType=t3HSMM localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHsmmCellPapPlusRawSigRep1\ type bigWig 1.000000 294373.000000\ wgEncodeSydhTfbsImr90Rad21IggrabSig IMR90 Rad2 IgR bigWig 1.000000 18682.000000 IMR90 Rad21 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 609 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 Rad21 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel IMR90 Rad2 IgR\ subGroups view=Signal factor=RAD21 cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90Rad21IggrabSig\ type bigWig 1.000000 18682.000000\ encTfChipPkENCFF838COI K562 KDM1A 2 narrowPeak Transcription Factor ChIP-seq Peaks of KDM1A in K562 from ENCODE 3 (ENCFF838COI) 1 609 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of KDM1A in K562 from ENCODE 3 (ENCFF838COI)\ parent encTfChipPk off\ shortLabel K562 KDM1A 2\ subGroups cellType=K562 factor=KDM1A\ track encTfChipPkENCFF838COI\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_ctss_fwd Mcf7ToEgf1_01hr20minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_forward 0 609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep1.CNhs12424.13036-139F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13036-139F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_tpm_fwd Mcf7ToEgf1_01hr20minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_forward 1 609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep1.CNhs12424.13036-139F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13036-139F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k4me3StdHotspotsRep2 SKRA H3K4M3 Ht 2 broadPeak SK-N-SH_RA H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 609 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel SKRA H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3SKNSHRA rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k4me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseWerirb1RawRep2 WERI-Rb-1 Sg 2 bigWig 1.000000 38425.000000 WERI-Rb-1 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 609 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WERI-Rb-1 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel WERI-Rb-1 Sg 2\ subGroups view=zRSig cellType=t3WERIRB1 rep=rep2 treatment=None\ track wgEncodeUwDnaseWerirb1RawRep2\ type bigWig 1.000000 38425.000000\ wgEncodeHaibTfbsA549Pbx3V0422111RawRep1 A549 PBx3 V11 1 bigWig 1.000000 3834.000000 A549 PBx3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 610 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 PBx3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 PBx3 V11 1\ subGroups view=RawSignal factor=PBX3 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsA549Pbx3V0422111RawRep1\ type bigWig 1.000000 3834.000000\ wgEncodeAwgTfbsUwHreCtcfUniPk HRE CTCF narrowPeak HRE TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 610 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRE TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HRE CTCF\ subGroups tier=a30 cellType=HRE factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHreCtcfUniPk\ wgEncodeCshlLongRnaSeqHsmmCellPapPlusRawSigRep2 HSMM cel pA+ + 2 bigWig 1.000000 393623.000000 HSMM whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 610 0 0 0 127 127 127 0 0 0 expression 0 longLabel HSMM whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HSMM cel pA+ + 2\ subGroups view=PlusSignal cellType=t3HSMM localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHsmmCellPapPlusRawSigRep2\ type bigWig 1.000000 393623.000000\ wgEncodeSydhTfbsImr90Rfx5IggrabPk IMR90 RFX5 IgR narrowPeak IMR90 RFX5 (200-401-194) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 610 0 0 0 127 127 127 0 0 0 regulation 1 longLabel IMR90 RFX5 (200-401-194) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel IMR90 RFX5 IgR\ subGroups view=Peaks factor=RFX5200401194 cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90Rfx5IggrabPk\ type narrowPeak\ encTfChipPkENCFF042RAK K562 KDM4B 1 narrowPeak Transcription Factor ChIP-seq Peaks of KDM4B in K562 from ENCODE 3 (ENCFF042RAK) 1 610 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of KDM4B in K562 from ENCODE 3 (ENCFF042RAK)\ parent encTfChipPk off\ shortLabel K562 KDM4B 1\ subGroups cellType=K562 factor=KDM4B\ track encTfChipPkENCFF042RAK\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_ctss_rev Mcf7ToEgf1_01hr20minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_reverse 0 610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep1.CNhs12424.13036-139F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13036-139F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_tpm_rev Mcf7ToEgf1_01hr20minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_reverse 1 610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep1.CNhs12424.13036-139F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13036-139F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k4me3StdPkRep2 SKRA H3K4M3 Pk 2 narrowPeak SK-N-SH_RA H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 610 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel SKRA H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3SKNSHRA rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k4me3StdPkRep2\ type narrowPeak\ wgEncodeUwDnaseWi38HotspotsRep1 WI-38 Ht 1 broadPeak WI-38 DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 610 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel WI-38 Ht 1\ subGroups view=Hot cellType=t3WI38 rep=rep1 treatment=None\ track wgEncodeUwDnaseWi38HotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549Pbx3V0422111PkRep2 A549 PBx3 V11 2 broadPeak A549 PBx3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 611 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 PBx3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 PBx3 V11 2\ subGroups view=Peaks factor=PBX3 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsA549Pbx3V0422111PkRep2\ type broadPeak\ wgEncodeAwgTfbsUwHrpeCtcfUniPk HRPEpiC CTCF narrowPeak HRPEpiC TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 611 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HRPEpiC TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HRPEpiC CTCF\ subGroups tier=a30 cellType=HRPEPIC factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHrpeCtcfUniPk\ wgEncodeCshlLongRnaSeqHvmf60912033CellTotalAlnRep1 HVMF cel tot A 1 bam HVMF whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 611 0 0 0 127 127 127 0 0 0 expression 1 longLabel HVMF whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HVMF cel tot A 1\ subGroups view=Alignments cellType=t3HVMF localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHvmf60912033CellTotalAlnRep1\ type bam\ wgEncodeSydhTfbsImr90Rfx5IggrabSig IMR90 RFX5 IgR bigWig 1.000000 464.000000 IMR90 RFX5 (200-401-194) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 611 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 RFX5 (200-401-194) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel IMR90 RFX5 IgR\ subGroups view=Signal factor=RFX5200401194 cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90Rfx5IggrabSig\ type bigWig 1.000000 464.000000\ encTfChipPkENCFF477FYN K562 KDM4B 2 narrowPeak Transcription Factor ChIP-seq Peaks of KDM4B in K562 from ENCODE 3 (ENCFF477FYN) 1 611 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of KDM4B in K562 from ENCODE 3 (ENCFF477FYN)\ parent encTfChipPk off\ shortLabel K562 KDM4B 2\ subGroups cellType=K562 factor=KDM4B\ track encTfChipPkENCFF477FYN\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_ctss_fwd Mcf7ToEgf1_01hr20minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_forward 0 611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep2.CNhs12480.13102-140D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13102-140D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_tpm_fwd Mcf7ToEgf1_01hr20minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_forward 1 611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep2.CNhs12480.13102-140D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13102-140D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k4me3StdRawRep2 SKRA H3K4M3 Sg 2 bigWig 1.000000 1287.000000 SK-N-SH_RA H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 611 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH_RA H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SKRA H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3SKNSHRA rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k4me3StdRawRep2\ type bigWig 1.000000 1287.000000\ wgEncodeUwDnaseWi38OhtamHotspotsRep1 WI-38 OHTM Ht 1 broadPeak WI-38 4-OHTAM 20 nM 72 hr DNaseI HS HotSpots Rep 1 from ENCODE/UW 1 611 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 4-OHTAM 20 nM 72 hr DNaseI HS HotSpots Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel WI-38 OHTM Ht 1\ subGroups view=Hot cellType=t3WI38 treatment=OHTAM rep=rep1\ track wgEncodeUwDnaseWi38OhtamHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549Pbx3V0422111RawRep2 A549 PBx3 V11 2 bigWig 1.000000 3628.000000 A549 PBx3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 612 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 PBx3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 PBx3 V11 2\ subGroups view=RawSignal factor=PBX3 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsA549Pbx3V0422111RawRep2\ type bigWig 1.000000 3628.000000\ wgEncodeAwgTfbsBroadHsmmCtcfUniPk HSMM CTCF narrowPeak HSMM TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis 1 612 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMM TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HSMM CTCF\ subGroups tier=a30 cellType=HSMM factor=CTCF lab=Broad\ track wgEncodeAwgTfbsBroadHsmmCtcfUniPk\ wgEncodeCshlLongRnaSeqHvmf61004013CellTotalAlnRep2 HVMF cel tot A 2 bam HVMF whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 612 0 0 0 127 127 127 0 0 0 expression 1 longLabel HVMF whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HVMF cel tot A 2\ subGroups view=Alignments cellType=t3HVMF localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHvmf61004013CellTotalAlnRep2\ type bam\ wgEncodeSydhTfbsImr90InputIggrabSig IMR90 Inpt IgR bigWig 1.000000 27735.000000 IMR90 Input IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 612 0 0 0 127 127 127 0 0 0 regulation 0 longLabel IMR90 Input IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel IMR90 Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t2IMR90 control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsImr90InputIggrabSig\ type bigWig 1.000000 27735.000000\ encTfChipPkENCFF368TYM K562 KDM5B narrowPeak Transcription Factor ChIP-seq Peaks of KDM5B in K562 from ENCODE 3 (ENCFF368TYM) 1 612 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of KDM5B in K562 from ENCODE 3 (ENCFF368TYM)\ parent encTfChipPk off\ shortLabel K562 KDM5B\ subGroups cellType=K562 factor=KDM5B\ track encTfChipPkENCFF368TYM\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_ctss_rev Mcf7ToEgf1_01hr20minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_reverse 0 612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep2.CNhs12480.13102-140D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13102-140D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_tpm_rev Mcf7ToEgf1_01hr20minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_reverse 1 612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep2.CNhs12480.13102-140D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13102-140D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k27me3StdHotspotsRep1 SKRA H3K27M3 Ht 1 broadPeak SK-N-SH_RA H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 612 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA H3K27me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel SKRA H3K27M3 Ht 1\ subGroups view=Hot factor=H3K27ME3 cellType=t3SKNSHRA rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k27me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseWi38OhtamPkRep1 WI-38 OHTM Pk 1 narrowPeak WI-38 4-OHTAM 20 nM 72 hr DNaseI HS Peaks Rep 1 from ENCODE/UW 1 612 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 4-OHTAM 20 nM 72 hr DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel WI-38 OHTM Pk 1\ subGroups view=Peaks cellType=t3WI38 treatment=OHTAM rep=rep1\ track wgEncodeUwDnaseWi38OhtamPkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549Pol2Pcr2xDex100nmPkRep1 A549 Pol2 DEX 1 broadPeak A549 Pol2 DEX 100nM PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 613 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 Pol2 DEX 100nM PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 Pol2 DEX 1\ subGroups view=Peaks factor=POL2 cellType=t2A549 protocol=PCR2X treatment=DEX100NM rep=rep1\ track wgEncodeHaibTfbsA549Pol2Pcr2xDex100nmPkRep1\ type broadPeak\ wgEncodeAwgTfbsBroadHsmmEzh239875UniPk HSMM EZH2 narrowPeak HSMM TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis 1 613 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMM TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HSMM EZH2\ subGroups tier=a30 cellType=HSMM factor=EZH2 lab=Broad\ track wgEncodeAwgTfbsBroadHsmmEzh239875UniPk\ wgEncodeCshlLongRnaSeqHvmfCellTotalContigs HVMF cel tot C bed 6 + HVMF whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 613 0 0 0 127 127 127 0 0 0 expression 1 longLabel HVMF whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HVMF cel tot C\ subGroups view=Contigs cellType=t3HVMF localization=CELL rank=none rep=Pooled rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHvmfCellTotalContigs\ type bed 6 +\ encTfChipPkENCFF844HBQ K562 KLF16 narrowPeak Transcription Factor ChIP-seq Peaks of KLF16 in K562 from ENCODE 3 (ENCFF844HBQ) 1 613 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of KLF16 in K562 from ENCODE 3 (ENCFF844HBQ)\ parent encTfChipPk off\ shortLabel K562 KLF16\ subGroups cellType=K562 factor=KLF16\ track encTfChipPkENCFF844HBQ\ wgEncodeSydhTfbsMcf7Gata3UcdPk MCF7 GAT3 UCD narrowPeak MCF-7 GATA3 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 613 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 GATA3 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel MCF7 GAT3 UCD\ subGroups view=Peaks factor=GATA3 cellType=t2MCF7 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsMcf7Gata3UcdPk\ type narrowPeak\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_ctss_fwd Mcf7ToEgf1_01hr20minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_forward 0 613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep3.CNhs12742.13168-141B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13168-141B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_tpm_fwd Mcf7ToEgf1_01hr20minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_forward 1 613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep3.CNhs12742.13168-141B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13168-141B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k27me3StdPkRep1 SKRA H3K27M3 Pk 1 narrowPeak SK-N-SH_RA H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 613 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA H3K27me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel SKRA H3K27M3 Pk 1\ subGroups view=Peaks factor=H3K27ME3 cellType=t3SKNSHRA rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k27me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseWi38PkRep1 WI-38 Pk 1 narrowPeak WI-38 DNaseI HS Peaks Rep 1 from ENCODE/UW 1 613 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 DNaseI HS Peaks Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel WI-38 Pk 1\ subGroups view=Peaks cellType=t3WI38 rep=rep1 treatment=None\ track wgEncodeUwDnaseWi38PkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549Pol2Pcr2xDex100nmRawRep1 A549 Pol2 DEX 1 bigWig 0.206788 585.054016 A549 Pol2 DEX 100nM PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 614 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Pol2 DEX 100nM PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 Pol2 DEX 1\ subGroups view=RawSignal factor=POL2 cellType=t2A549 protocol=PCR2X treatment=DEX100NM rep=rep1\ track wgEncodeHaibTfbsA549Pol2Pcr2xDex100nmRawRep1\ type bigWig 0.206788 585.054016\ wgEncodeAwgTfbsBroadHsmmtCtcfUniPk HSMMtube CTCF narrowPeak HSMMtube TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis 1 614 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMMtube TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HSMMtube CTCF\ subGroups tier=a30 cellType=HSMMTUBE factor=CTCF lab=Broad\ track wgEncodeAwgTfbsBroadHsmmtCtcfUniPk\ wgEncodeCshlLongRnaSeqHvmfCellTotalJunctions HVMF cel tot J bed 6 + HVMF whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 614 0 0 0 127 127 127 0 0 0 expression 1 longLabel HVMF whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HVMF cel tot J\ subGroups view=Junctions cellType=t3HVMF localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHvmfCellTotalJunctions\ type bed 6 +\ encTfChipPkENCFF314ULQ K562 L3MBTL2 narrowPeak Transcription Factor ChIP-seq Peaks of L3MBTL2 in K562 from ENCODE 3 (ENCFF314ULQ) 1 614 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of L3MBTL2 in K562 from ENCODE 3 (ENCFF314ULQ)\ parent encTfChipPk off\ shortLabel K562 L3MBTL2\ subGroups cellType=K562 factor=L3MBTL2\ track encTfChipPkENCFF314ULQ\ wgEncodeSydhTfbsMcf7Gata3UcdSig MCF7 GAT3 UCD bigWig 1.000000 29891.000000 MCF-7 GATA3 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 614 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 GATA3 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF7 GAT3 UCD\ subGroups view=Signal factor=GATA3 cellType=t2MCF7 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsMcf7Gata3UcdSig\ type bigWig 1.000000 29891.000000\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_ctss_rev Mcf7ToEgf1_01hr20minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_reverse 0 614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep3.CNhs12742.13168-141B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13168-141B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_tpm_rev Mcf7ToEgf1_01hr20minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_reverse 1 614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep3.CNhs12742.13168-141B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13168-141B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k27me3StdRawRep1 SKRA H3K27M3 Sg 1 bigWig 1.000000 3475.000000 SK-N-SH_RA H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 614 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH_RA H3K27me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SKRA H3K27M3 Sg 1\ subGroups view=zRSig factor=H3K27ME3 cellType=t3SKNSHRA rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k27me3StdRawRep1\ type bigWig 1.000000 3475.000000\ wgEncodeUwDnaseWi38OhtamRawRep1 WI-38 OHTM Sg 1 bigWig 1.000000 21917.000000 WI-38 4-OHTAM 20 nM 72 hr DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 614 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WI-38 4-OHTAM 20 nM 72 hr DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel WI-38 OHTM Sg 1\ subGroups view=zRSig cellType=t3WI38 treatment=OHTAM rep=rep1\ track wgEncodeUwDnaseWi38OhtamRawRep1\ type bigWig 1.000000 21917.000000\ wgEncodeHaibTfbsA549Pol2Pcr2xDex100nmPkRep2 A549 Pol2 DEX 2 broadPeak A549 Pol2 DEX 100nM PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 615 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 Pol2 DEX 100nM PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 Pol2 DEX 2\ subGroups view=Peaks factor=POL2 cellType=t2A549 protocol=PCR2X treatment=DEX100NM rep=rep2\ track wgEncodeHaibTfbsA549Pol2Pcr2xDex100nmPkRep2\ type broadPeak\ wgEncodeAwgTfbsBroadHsmmtEzh239875UniPk HSMMtube EZH2 narrowPeak HSMMtube TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis 1 615 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HSMMtube TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HSMMtube EZH2\ subGroups tier=a30 cellType=HSMMTUBE factor=EZH2 lab=Broad\ track wgEncodeAwgTfbsBroadHsmmtEzh239875UniPk\ wgEncodeCshlLongRnaSeqHvmf60912033CellTotalMinusRep1 HVMF cel tot - 1 bigWig 1.000000 26941320.000000 HVMF whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 615 0 0 0 127 127 127 0 0 0 expression 0 longLabel HVMF whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HVMF cel tot - 1\ subGroups view=MinusSignal cellType=t3HVMF localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHvmf60912033CellTotalMinusRep1\ type bigWig 1.000000 26941320.000000\ encTfChipPkENCFF659WAF K562 LEF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of LEF1 in K562 from ENCODE 3 (ENCFF659WAF) 1 615 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of LEF1 in K562 from ENCODE 3 (ENCFF659WAF)\ parent encTfChipPk off\ shortLabel K562 LEF1 1\ subGroups cellType=K562 factor=LEF1\ track encTfChipPkENCFF659WAF\ wgEncodeSydhTfbsMcf7Gata3sc269UcdPk MCF7 GAT3 UCD narrowPeak MCF-7 GATA3 SC269 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 615 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 GATA3 SC269 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel MCF7 GAT3 UCD\ subGroups view=Peaks factor=GATA3SC269 cellType=t2MCF7 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsMcf7Gata3sc269UcdPk\ type narrowPeak\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_ctss_fwd Mcf7ToEgf1_01hr40minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_forward 0 615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep1.CNhs12425.13037-139F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13037-139F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_tpm_fwd Mcf7ToEgf1_01hr40minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_forward 1 615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep1.CNhs12425.13037-139F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13037-139F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k27me3StdHotspotsRep2 SKRA H3K27M3 Ht 2 broadPeak SK-N-SH_RA H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 615 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA H3K27me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel SKRA H3K27M3 Ht 2\ subGroups view=Hot factor=H3K27ME3 cellType=t3SKNSHRA rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k27me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseWi38RawRep1 WI-38 Sg 1 bigWig 1.000000 38786.000000 WI-38 DNaseI HS Raw Signal Rep 1 from ENCODE/UW 2 615 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WI-38 DNaseI HS Raw Signal Rep 1 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel WI-38 Sg 1\ subGroups view=zRSig cellType=t3WI38 rep=rep1 treatment=None\ track wgEncodeUwDnaseWi38RawRep1\ type bigWig 1.000000 38786.000000\ wgEncodeHaibTfbsA549Pol2Pcr2xDex100nmRawRep2 A549 Pol2 DEX 2 bigWig 0.162130 1033.780029 A549 Pol2 DEX 100nM PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 616 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Pol2 DEX 100nM PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 Pol2 DEX 2\ subGroups view=RawSignal factor=POL2 cellType=t2A549 protocol=PCR2X treatment=DEX100NM rep=rep2\ track wgEncodeHaibTfbsA549Pol2Pcr2xDex100nmRawRep2\ type bigWig 0.162130 1033.780029\ wgEncodeCshlLongRnaSeqHvmf61004013CellTotalMinusRep2 HVMF cel tot - 2 bigWig 1.000000 24374862.000000 HVMF whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 616 0 0 0 127 127 127 0 0 0 expression 0 longLabel HVMF whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HVMF cel tot - 2\ subGroups view=MinusSignal cellType=t3HVMF localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHvmf61004013CellTotalMinusRep2\ type bigWig 1.000000 24374862.000000\ wgEncodeAwgTfbsUwHvmfCtcfUniPk HVMF CTCF narrowPeak HVMF TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 616 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HVMF TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel HVMF CTCF\ subGroups tier=a30 cellType=HVMF factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwHvmfCtcfUniPk\ encTfChipPkENCFF043YZF K562 LEF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of LEF1 in K562 from ENCODE 3 (ENCFF043YZF) 1 616 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of LEF1 in K562 from ENCODE 3 (ENCFF043YZF)\ parent encTfChipPk off\ shortLabel K562 LEF1 2\ subGroups cellType=K562 factor=LEF1\ track encTfChipPkENCFF043YZF\ wgEncodeSydhTfbsMcf7Gata3sc269UcdSig MCF7 GAT3 UCD bigWig 1.000000 22065.000000 MCF-7 GATA3 SC269 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 616 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 GATA3 SC269 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF7 GAT3 UCD\ subGroups view=Signal factor=GATA3SC269 cellType=t2MCF7 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsMcf7Gata3sc269UcdSig\ type bigWig 1.000000 22065.000000\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_ctss_rev Mcf7ToEgf1_01hr40minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_reverse 0 616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep1.CNhs12425.13037-139F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13037-139F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_tpm_rev Mcf7ToEgf1_01hr40minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_reverse 1 616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep1.CNhs12425.13037-139F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13037-139F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k27me3StdPkRep2 SKRA H3K27M3 Pk 2 narrowPeak SK-N-SH_RA H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 616 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA H3K27me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel SKRA H3K27M3 Pk 2\ subGroups view=Peaks factor=H3K27ME3 cellType=t3SKNSHRA rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k27me3StdPkRep2\ type narrowPeak\ wgEncodeUwDnaseWi38HotspotsRep2 WI-38 Ht 2 broadPeak WI-38 DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 616 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel WI-38 Ht 2\ subGroups view=Hot cellType=t3WI38 rep=rep2 treatment=None\ track wgEncodeUwDnaseWi38HotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549Pol2Pcr2xEtoh02PkRep1 A549 Pol2 EtOH 1 broadPeak A549 Pol2 EtOH PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 617 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 Pol2 EtOH PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 Pol2 EtOH 1\ subGroups view=Peaks factor=POL2 cellType=t2A549 protocol=PCR2X treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Pol2Pcr2xEtoh02PkRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHvmf60912033CellTotalPlusRep1 HVMF cel tot + 1 bigWig 1.000000 25863542.000000 HVMF whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 617 0 0 0 127 127 127 0 0 0 expression 0 longLabel HVMF whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HVMF cel tot + 1\ subGroups view=PlusSignal cellType=t3HVMF localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHvmf60912033CellTotalPlusRep1\ type bigWig 1.000000 25863542.000000\ encTfChipPkENCFF308IXJ K562 MAFF narrowPeak Transcription Factor ChIP-seq Peaks of MAFF in K562 from ENCODE 3 (ENCFF308IXJ) 1 617 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MAFF in K562 from ENCODE 3 (ENCFF308IXJ)\ parent encTfChipPk off\ shortLabel K562 MAFF\ subGroups cellType=K562 factor=MAFF\ track encTfChipPkENCFF308IXJ\ wgEncodeAwgTfbsSydhMcf10aesE2f4TamHvdUniPk MCF10AEr+T36 E2F4 narrowPeak MCF10A-Er-Src (TAM 36h) TFBS Uniform Peaks of E2F4 ENCODE/Harvard/Analysis 1 617 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A-Er-Src (TAM 36h) TFBS Uniform Peaks of E2F4 ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF10AEr+T36 E2F4\ subGroups tier=a30 cellType=MCF10AERSRC factor=E2F4 lab=Harvard\ track wgEncodeAwgTfbsSydhMcf10aesE2f4TamHvdUniPk\ wgEncodeSydhTfbsMcf7Hae2f1UcdPk MCF7 HAE2 UCD narrowPeak MCF-7 HA-E2F1 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 617 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 HA-E2F1 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel MCF7 HAE2 UCD\ subGroups view=Peaks factor=HAE2F1 cellType=t2MCF7 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsMcf7Hae2f1UcdPk\ type narrowPeak\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_ctss_fwd Mcf7ToEgf1_01hr40minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_forward 0 617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep2.CNhs12482.13103-140D7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13103-140D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_tpm_fwd Mcf7ToEgf1_01hr40minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_forward 1 617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep2.CNhs12482.13103-140D7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13103-140D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k27me3StdRawRep2 SKRA H3K27M3 Sg 2 bigWig 1.000000 5070.000000 SK-N-SH_RA H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 617 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH_RA H3K27me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SKRA H3K27M3 Sg 2\ subGroups view=zRSig factor=H3K27ME3 cellType=t3SKNSHRA rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k27me3StdRawRep2\ type bigWig 1.000000 5070.000000\ wgEncodeUwDnaseWi38OhtamHotspotsRep2 WI-38 OHTM Ht 2 broadPeak WI-38 4-OHTAM 20 nM 72 hr DNaseI HS HotSpots Rep 2 from ENCODE/UW 1 617 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 4-OHTAM 20 nM 72 hr DNaseI HS HotSpots Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewHot off\ shortLabel WI-38 OHTM Ht 2\ subGroups view=Hot cellType=t3WI38 treatment=OHTAM rep=rep2\ track wgEncodeUwDnaseWi38OhtamHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549Pol2Pcr2xEtoh02RawRep1 A549 Pol2 EtOH 1 bigWig 0.184408 762.205994 A549 Pol2 EtOH PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 618 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Pol2 EtOH PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 Pol2 EtOH 1\ subGroups view=RawSignal factor=POL2 cellType=t2A549 protocol=PCR2X treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Pol2Pcr2xEtoh02RawRep1\ type bigWig 0.184408 762.205994\ wgEncodeCshlLongRnaSeqHvmf61004013CellTotalPlusRep2 HVMF cel tot + 2 bigWig 1.000000 24006272.000000 HVMF whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 618 0 0 0 127 127 127 0 0 0 expression 0 longLabel HVMF whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HVMF cel tot + 2\ subGroups view=PlusSignal cellType=t3HVMF localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHvmf61004013CellTotalPlusRep2\ type bigWig 1.000000 24006272.000000\ encTfChipPkENCFF812QPN K562 MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in K562 from ENCODE 3 (ENCFF812QPN) 1 618 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in K562 from ENCODE 3 (ENCFF812QPN)\ parent encTfChipPk off\ shortLabel K562 MAFK\ subGroups cellType=K562 factor=MAFK\ track encTfChipPkENCFF812QPN\ wgEncodeAwgTfbsSydhMcf10aesCfosEtoh01HvdUniPk MCF10AEr+Et1 FOS narrowPeak MCF10A-Er-Src (EtOH .01) TFBS Uniform Peaks of c-Fos ENCODE/Harvard/Analysis 1 618 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A-Er-Src (EtOH .01) TFBS Uniform Peaks of c-Fos ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF10AEr+Et1 FOS\ subGroups tier=a30 cellType=MCF10AERSRC factor=FOS lab=Harvard\ track wgEncodeAwgTfbsSydhMcf10aesCfosEtoh01HvdUniPk\ wgEncodeSydhTfbsMcf7Hae2f1UcdSig MCF7 HAE2 UCD bigWig 0.000000 3515.699951 MCF-7 HA-E2F1 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 618 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 HA-E2F1 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF7 HAE2 UCD\ subGroups view=Signal factor=HAE2F1 cellType=t2MCF7 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsMcf7Hae2f1UcdSig\ type bigWig 0.000000 3515.699951\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_ctss_rev Mcf7ToEgf1_01hr40minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_reverse 0 618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep2.CNhs12482.13103-140D7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13103-140D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_tpm_rev Mcf7ToEgf1_01hr40minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_reverse 1 618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep2.CNhs12482.13103-140D7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13103-140D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k36me3StdHotspotsRep1 SKRA H3K36M3 Ht 1 broadPeak SK-N-SH_RA H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 618 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA H3K36me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel SKRA H3K36M3 Ht 1\ subGroups view=Hot factor=H3K36ME3 cellType=t3SKNSHRA rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k36me3StdHotspotsRep1\ type broadPeak\ wgEncodeUwDnaseWi38OhtamPkRep2 WI-38 OHTM Pk 2 narrowPeak WI-38 4-OHTAM 20 nM 72 hr DNaseI HS Peaks Rep 2 from ENCODE/UW 1 618 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 4-OHTAM 20 nM 72 hr DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel WI-38 OHTM Pk 2\ subGroups view=Peaks cellType=t3WI38 treatment=OHTAM rep=rep2\ track wgEncodeUwDnaseWi38OhtamPkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549Pol2Pcr2xEtoh02PkRep2 A549 Pol2 EtOH 2 broadPeak A549 Pol2 EtOH PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 619 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 Pol2 EtOH PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 Pol2 EtOH 2\ subGroups view=Peaks factor=POL2 cellType=t2A549 protocol=PCR2X treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Pol2Pcr2xEtoh02PkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHwp81202015CellTotalAlnRep1 HWP cel tot A 1 bam HWP whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 619 0 0 0 127 127 127 0 0 0 expression 1 longLabel HWP whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HWP cel tot A 1\ subGroups view=Alignments cellType=t3HWP localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHwp81202015CellTotalAlnRep1\ type bam\ encTfChipPkENCFF799HIG K562 MAX 1 narrowPeak Transcription Factor ChIP-seq Peaks of MAX in K562 from ENCODE 3 (ENCFF799HIG) 1 619 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MAX in K562 from ENCODE 3 (ENCFF799HIG)\ parent encTfChipPk off\ shortLabel K562 MAX 1\ subGroups cellType=K562 factor=MAX\ track encTfChipPkENCFF799HIG\ wgEncodeAwgTfbsSydhMcf10aesCfosTam112hHvdUniPk MCF10AEr+T12 FOS narrowPeak MCF10A-Er-Src (TAM 12h) TFBS Uniform Peaks of c-Fos ENCODE/Harvard/Analysis 1 619 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A-Er-Src (TAM 12h) TFBS Uniform Peaks of c-Fos ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF10AEr+T12 FOS\ subGroups tier=a30 cellType=MCF10AERSRC factor=FOS lab=Harvard\ track wgEncodeAwgTfbsSydhMcf10aesCfosTam112hHvdUniPk\ wgEncodeSydhTfbsMcf7Tcf7l2UcdPk MCF7 TCF7L2 UCD narrowPeak MCF-7 TCF7L2 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 619 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 TCF7L2 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel MCF7 TCF7L2 UCD\ subGroups view=Peaks factor=TCF7L2 cellType=t2MCF7 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsMcf7Tcf7l2UcdPk\ type narrowPeak\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_ctss_fwd Mcf7ToEgf1_01hr40minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_forward 0 619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep3.CNhs12743.13169-141C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13169-141C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_tpm_fwd Mcf7ToEgf1_01hr40minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_forward 1 619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep3.CNhs12743.13169-141C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13169-141C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k36me3StdPkRep1 SKRA H3K36M3 Pk 1 narrowPeak SK-N-SH_RA H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 619 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA H3K36me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel SKRA H3K36M3 Pk 1\ subGroups view=Peaks factor=H3K36ME3 cellType=t3SKNSHRA rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k36me3StdPkRep1\ type narrowPeak\ wgEncodeUwDnaseWi38PkRep2 WI-38 Pk 2 narrowPeak WI-38 DNaseI HS Peaks Rep 2 from ENCODE/UW 1 619 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 DNaseI HS Peaks Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewaPeaks off\ shortLabel WI-38 Pk 2\ subGroups view=Peaks cellType=t3WI38 rep=rep2 treatment=None\ track wgEncodeUwDnaseWi38PkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549Pol2Pcr2xEtoh02RawRep2 A549 Pol2 EtOH 2 bigWig 0.166768 972.255005 A549 Pol2 EtOH PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 620 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Pol2 EtOH PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 Pol2 EtOH 2\ subGroups view=RawSignal factor=POL2 cellType=t2A549 protocol=PCR2X treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Pol2Pcr2xEtoh02RawRep2\ type bigWig 0.166768 972.255005\ wgEncodeCshlLongRnaSeqHwp0092205CellTotalAlnRep2 HWP cel tot A 2 bam HWP whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 620 0 0 0 127 127 127 0 0 0 expression 1 longLabel HWP whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel HWP cel tot A 2\ subGroups view=Alignments cellType=t3HWP localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHwp0092205CellTotalAlnRep2\ type bam\ encTfChipPkENCFF422NGZ K562 MAX 2 narrowPeak Transcription Factor ChIP-seq Peaks of MAX in K562 from ENCODE 3 (ENCFF422NGZ) 1 620 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MAX in K562 from ENCODE 3 (ENCFF422NGZ)\ parent encTfChipPk off\ shortLabel K562 MAX 2\ subGroups cellType=K562 factor=MAX\ track encTfChipPkENCFF422NGZ\ wgEncodeAwgTfbsSydhMcf10aesCfosTamHvdUniPk MCF10AEr+T36 FOS narrowPeak MCF10A-Er-Src (TAM 36h) TFBS Uniform Peaks of c-Fos ENCODE/Harvard/Analysis 1 620 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A-Er-Src (TAM 36h) TFBS Uniform Peaks of c-Fos ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF10AEr+T36 FOS\ subGroups tier=a30 cellType=MCF10AERSRC factor=FOS lab=Harvard\ track wgEncodeAwgTfbsSydhMcf10aesCfosTamHvdUniPk\ wgEncodeSydhTfbsMcf7Tcf7l2UcdSig MCF7 TCF7L2 UCD bigWig 1.000000 20980.000000 MCF-7 TCF7L2 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 620 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 TCF7L2 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF7 TCF7L2 UCD\ subGroups view=Signal factor=TCF7L2 cellType=t2MCF7 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsMcf7Tcf7l2UcdSig\ type bigWig 1.000000 20980.000000\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_ctss_rev Mcf7ToEgf1_01hr40minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_reverse 0 620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep3.CNhs12743.13169-141C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13169-141C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_tpm_rev Mcf7ToEgf1_01hr40minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_reverse 1 620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep3.CNhs12743.13169-141C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13169-141C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k36me3StdRawRep1 SKRA H3K36M3 Sg 1 bigWig 1.000000 6275.000000 SK-N-SH_RA H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 620 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH_RA H3K36me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SKRA H3K36M3 Sg 1\ subGroups view=zRSig factor=H3K36ME3 cellType=t3SKNSHRA rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k36me3StdRawRep1\ type bigWig 1.000000 6275.000000\ wgEncodeUwDnaseWi38OhtamRawRep2 WI-38 OHTM Sg 2 bigWig 1.000000 24297.000000 WI-38 4-OHTAM 20 nM 72 hr DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 620 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WI-38 4-OHTAM 20 nM 72 hr DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel WI-38 OHTM Sg 2\ subGroups view=zRSig cellType=t3WI38 treatment=OHTAM rep=rep2\ track wgEncodeUwDnaseWi38OhtamRawRep2\ type bigWig 1.000000 24297.000000\ wgEncodeHaibTfbsA549Rad21V0422111PkRep1 A549 RAD21 V11 1 broadPeak A549 RAD21 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 621 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 RAD21 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 RAD21 V11 1\ subGroups view=Peaks factor=RAD21 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsA549Rad21V0422111PkRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHwpCellTotalContigs HWP cel tot C bed 6 + HWP whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 621 0 0 0 127 127 127 0 0 0 expression 1 longLabel HWP whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel HWP cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3HWP localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqHwpCellTotalContigs\ type bed 6 +\ encTfChipPkENCFF470MLY K562 MBD2 narrowPeak Transcription Factor ChIP-seq Peaks of MBD2 in K562 from ENCODE 3 (ENCFF470MLY) 1 621 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MBD2 in K562 from ENCODE 3 (ENCFF470MLY)\ parent encTfChipPk off\ shortLabel K562 MBD2\ subGroups cellType=K562 factor=MBD2\ track encTfChipPkENCFF470MLY\ wgEncodeAwgTfbsSydhMcf10aesCfosTam14hHvdUniPk MCF10AEr+T4 FOS narrowPeak MCF10A-Er-Src (TAM 4h) TFBS Uniform Peaks of c-Fos ENCODE/Harvard/Analysis 1 621 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A-Er-Src (TAM 4h) TFBS Uniform Peaks of c-Fos ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF10AEr+T4 FOS\ subGroups tier=a30 cellType=MCF10AERSRC factor=FOS lab=Harvard\ track wgEncodeAwgTfbsSydhMcf10aesCfosTam14hHvdUniPk\ wgEncodeSydhTfbsMcf7Znf217UcdPk MCF7 Z217 UCD narrowPeak MCF-7 ZNF217 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 621 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 ZNF217 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel MCF7 Z217 UCD\ subGroups view=Peaks factor=ZNF217 cellType=t2MCF7 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsMcf7Znf217UcdPk\ type narrowPeak\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_ctss_fwd Mcf7ToEgf1_02hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_forward 0 621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep1.CNhs12426.13038-139F5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13038-139F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_tpm_fwd Mcf7ToEgf1_02hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_forward 1 621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep1.CNhs12426.13038-139F5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13038-139F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k36me3StdHotspotsRep2 SKRA H3K36M3 Ht 2 broadPeak SK-N-SH_RA H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 621 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA H3K36me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewHot off\ shortLabel SKRA H3K36M3 Ht 2\ subGroups view=Hot factor=H3K36ME3 cellType=t3SKNSHRA rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k36me3StdHotspotsRep2\ type broadPeak\ wgEncodeUwDnaseWi38RawRep2 WI-38 Sg 2 bigWig 1.000000 34718.000000 WI-38 DNaseI HS Raw Signal Rep 2 from ENCODE/UW 2 621 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WI-38 DNaseI HS Raw Signal Rep 2 from ENCODE/UW\ parent wgEncodeUwDnaseViewzRaw off\ shortLabel WI-38 Sg 2\ subGroups view=zRSig cellType=t3WI38 rep=rep2 treatment=None\ track wgEncodeUwDnaseWi38RawRep2\ type bigWig 1.000000 34718.000000\ wgEncodeHaibTfbsA549Rad21V0422111RawRep1 A549 RAD21 V11 1 bigWig 1.000000 2348.000000 A549 RAD21 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 622 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 RAD21 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 RAD21 V11 1\ subGroups view=RawSignal factor=RAD21 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsA549Rad21V0422111RawRep1\ type bigWig 1.000000 2348.000000\ wgEncodeCshlLongRnaSeqHwpCellTotalJunctions HWP cel tot J bed 6 + HWP whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 622 0 0 0 127 127 127 0 0 0 expression 1 longLabel HWP whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel HWP cel tot J\ subGroups view=Junctions cellType=t3HWP localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqHwpCellTotalJunctions\ type bed 6 +\ encTfChipPkENCFF226CZE K562 MCM2 1 narrowPeak Transcription Factor ChIP-seq Peaks of MCM2 in K562 from ENCODE 3 (ENCFF226CZE) 1 622 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MCM2 in K562 from ENCODE 3 (ENCFF226CZE)\ parent encTfChipPk off\ shortLabel K562 MCM2 1\ subGroups cellType=K562 factor=MCM2\ track encTfChipPkENCFF226CZE\ wgEncodeAwgTfbsSydhMcf10aesCmycEtoh01HvdUniPk MCF10AEr+E1 MYC narrowPeak MCF10A-Er-Src (EtOH .01) TFBS Uniform Peaks of c-Myc ENCODE/Harvard/Analysis 1 622 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A-Er-Src (EtOH .01) TFBS Uniform Peaks of c-Myc ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF10AEr+E1 MYC\ subGroups tier=a30 cellType=MCF10AERSRC factor=MYC lab=Harvard\ track wgEncodeAwgTfbsSydhMcf10aesCmycEtoh01HvdUniPk\ wgEncodeSydhTfbsMcf7Znf217UcdSig MCF7 Z217 UCD bigWig 1.000000 21439.000000 MCF-7 ZNF217 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 622 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 ZNF217 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF7 Z217 UCD\ subGroups view=Signal factor=ZNF217 cellType=t2MCF7 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsMcf7Znf217UcdSig\ type bigWig 1.000000 21439.000000\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_ctss_rev Mcf7ToEgf1_02hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_reverse 0 622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep1.CNhs12426.13038-139F5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13038-139F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_tpm_rev Mcf7ToEgf1_02hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_reverse 1 622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep1.CNhs12426.13038-139F5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13038-139F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k36me3StdPkRep2 SKRA H3K36M3 Pk 2 narrowPeak SK-N-SH_RA H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 622 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA H3K36me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel SKRA H3K36M3 Pk 2\ subGroups view=Peaks factor=H3K36ME3 cellType=t3SKNSHRA rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k36me3StdPkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549Rad21V0422111PkRep2 A549 RAD21 V11 2 broadPeak A549 RAD21 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 623 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 RAD21 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 RAD21 V11 2\ subGroups view=Peaks factor=RAD21 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsA549Rad21V0422111PkRep2\ type broadPeak\ wgEncodeCshlLongRnaSeqHwp81202015CellTotalMinusRep1 HWP cel tot - 1 bigWig 1.000000 10897347.000000 HWP whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 623 0 0 0 127 127 127 0 0 0 expression 0 longLabel HWP whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HWP cel tot - 1\ subGroups view=MinusSignal cellType=t3HWP localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHwp81202015CellTotalMinusRep1\ type bigWig 1.000000 10897347.000000\ encTfChipPkENCFF067LIW K562 MCM2 2 narrowPeak Transcription Factor ChIP-seq Peaks of MCM2 in K562 from ENCODE 3 (ENCFF067LIW) 1 623 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MCM2 in K562 from ENCODE 3 (ENCFF067LIW)\ parent encTfChipPk off\ shortLabel K562 MCM2 2\ subGroups cellType=K562 factor=MCM2\ track encTfChipPkENCFF067LIW\ wgEncodeAwgTfbsSydhMcf10aesCmycTam14hHvdUniPk MCF10AEr+T4 MYC narrowPeak MCF10A-Er-Src (TAM 4h) TFBS Uniform Peaks of c-Myc ENCODE/Harvard/Analysis 1 623 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A-Er-Src (TAM 4h) TFBS Uniform Peaks of c-Myc ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF10AEr+T4 MYC\ subGroups tier=a30 cellType=MCF10AERSRC factor=MYC lab=Harvard\ track wgEncodeAwgTfbsSydhMcf10aesCmycTam14hHvdUniPk\ wgEncodeSydhTfbsMcf7InputUcdSig MCF7 Inpt UCD bigWig 0.000000 12982.900391 MCF-7 Input UC Davis ChIP-seq Signal from ENCODE/SYDH 2 623 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Input UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF7 Inpt UCD\ subGroups view=Signal factor=ZZZINPUTUCD cellType=t2MCF7 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsMcf7InputUcdSig\ type bigWig 0.000000 12982.900391\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_ctss_fwd Mcf7ToEgf1_02hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_forward 0 623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep2.CNhs12483.13104-140D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13104-140D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_tpm_fwd Mcf7ToEgf1_02hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_forward 1 623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep2.CNhs12483.13104-140D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13104-140D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraH3k36me3StdRawRep2 SKRA H3K36M3 Sg 2 bigWig 1.000000 6465.000000 SK-N-SH_RA H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 623 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH_RA H3K36me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SKRA H3K36M3 Sg 2\ subGroups view=zRSig factor=H3K36ME3 cellType=t3SKNSHRA rep=rep2 treatment=zNone\ track wgEncodeUwHistoneSknshraH3k36me3StdRawRep2\ type bigWig 1.000000 6465.000000\ wgEncodeHaibTfbsA549Rad21V0422111RawRep2 A549 RAD21 V11 2 bigWig 1.000000 2785.000000 A549 RAD21 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 624 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 RAD21 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 RAD21 V11 2\ subGroups view=RawSignal factor=RAD21 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsA549Rad21V0422111RawRep2\ type bigWig 1.000000 2785.000000\ wgEncodeCshlLongRnaSeqHwp0092205CellTotalMinusRep2 HWP cel tot - 2 bigWig 1.000000 23840584.000000 HWP whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 624 0 0 0 127 127 127 0 0 0 expression 0 longLabel HWP whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel HWP cel tot - 2\ subGroups view=MinusSignal cellType=t3HWP localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHwp0092205CellTotalMinusRep2\ type bigWig 1.000000 23840584.000000\ encTfChipPkENCFF679ITJ K562 MCM3 narrowPeak Transcription Factor ChIP-seq Peaks of MCM3 in K562 from ENCODE 3 (ENCFF679ITJ) 1 624 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MCM3 in K562 from ENCODE 3 (ENCFF679ITJ)\ parent encTfChipPk off\ shortLabel K562 MCM3\ subGroups cellType=K562 factor=MCM3\ track encTfChipPkENCFF679ITJ\ wgEncodeAwgTfbsSydhMcf10aesPol2Etoh01UniPk MCF10+E1 POLR2A narrowPeak MCF10A-Er-Src (EtOH .01) TFBS Uniform Peaks of Pol2 ENCODE/Harvard/Analysis 1 624 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A-Er-Src (EtOH .01) TFBS Uniform Peaks of Pol2 ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF10+E1 POLR2A\ subGroups tier=a30 cellType=MCF10AERSRC factor=POLR2A lab=Harvard\ track wgEncodeAwgTfbsSydhMcf10aesPol2Etoh01UniPk\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_ctss_rev Mcf7ToEgf1_02hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_reverse 0 624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep2.CNhs12483.13104-140D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13104-140D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_tpm_rev Mcf7ToEgf1_02hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_reverse 1 624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep2.CNhs12483.13104-140D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13104-140D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8\ urlLabel FANTOM5 Details:\ wgEncodeUwHistoneSknshraInputStdRawRep1 SKRA In Sg 1 bigWig 1.000000 12154.000000 SK-N-SH_RA Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 624 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH_RA Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel SKRA In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3SKNSHRA rep=rep1 treatment=zNone\ track wgEncodeUwHistoneSknshraInputStdRawRep1\ type bigWig 1.000000 12154.000000\ wgEncodeSydhTfbsSknshCtcfbIggrabPk SKSH CTCF IgR narrowPeak SK-N-SH CTCF (SC-15914) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 624 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH CTCF (SC-15914) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel SKSH CTCF IgR\ subGroups view=Peaks factor=CTCFb cellType=t2SKNSH control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsSknshCtcfbIggrabPk\ type narrowPeak\ wgEncodeHaibTfbsA549Sin3ak20V0422111Etoh02PkRep1 A549 Sin3A EtOH 1 broadPeak A549 Sin3Ak-20 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 625 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 Sin3Ak-20 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 Sin3A EtOH 1\ subGroups view=Peaks factor=SIN3AK20 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Sin3ak20V0422111Etoh02PkRep1\ type broadPeak\ wgEncodeCshlLongRnaSeqHwp81202015CellTotalPlusRep1 HWP cel tot + 1 bigWig 1.000000 12315278.000000 HWP whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 625 0 0 0 127 127 127 0 0 0 expression 0 longLabel HWP whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HWP cel tot + 1\ subGroups view=PlusSignal cellType=t3HWP localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqHwp81202015CellTotalPlusRep1\ type bigWig 1.000000 12315278.000000\ encTfChipPkENCFF920RYJ K562 MCM5 1 narrowPeak Transcription Factor ChIP-seq Peaks of MCM5 in K562 from ENCODE 3 (ENCFF920RYJ) 1 625 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MCM5 in K562 from ENCODE 3 (ENCFF920RYJ)\ parent encTfChipPk off\ shortLabel K562 MCM5 1\ subGroups cellType=K562 factor=MCM5\ track encTfChipPkENCFF920RYJ\ wgEncodeAwgTfbsSydhMcf10aesPol2TamUniPk MCF10+T36 POLR2A narrowPeak MCF10A-Er-Src (TAM 36h) TFBS Uniform Peaks of Pol2 ENCODE/Harvard/Analysis 1 625 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A-Er-Src (TAM 36h) TFBS Uniform Peaks of Pol2 ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF10+T36 POLR2A\ subGroups tier=a30 cellType=MCF10AERSRC factor=POLR2A lab=Harvard\ track wgEncodeAwgTfbsSydhMcf10aesPol2TamUniPk\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_ctss_fwd Mcf7ToEgf1_02hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_forward 0 625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep3.CNhs12744.13170-141C2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13170-141C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_tpm_fwd Mcf7ToEgf1_02hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_forward 1 625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep3.CNhs12744.13170-141C2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13170-141C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsSknshCtcfbIggrabSig SKSH CTCF IgR bigWig 1.000000 464.000000 SK-N-SH CTCF (SC-15914) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 625 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH CTCF (SC-15914) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel SKSH CTCF IgR\ subGroups view=Signal factor=CTCFb cellType=t2SKNSH control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsSknshCtcfbIggrabSig\ type bigWig 1.000000 464.000000\ wgEncodeUwHistoneWerirb1H3k04me3StdHotspotsRep1 WERI H3K4M3 Ht 1 broadPeak WERI-Rb-1 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 625 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WERI-Rb-1 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel WERI H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3WERIRB1 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneWerirb1H3k04me3StdHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549Sin3ak20V0422111Etoh02RawRep1 A549 Sin3A EtOH 1 bigWig 0.102443 491.776001 A549 Sin3Ak-20 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 626 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Sin3Ak-20 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 Sin3A EtOH 1\ subGroups view=RawSignal factor=SIN3AK20 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Sin3ak20V0422111Etoh02RawRep1\ type bigWig 0.102443 491.776001\ wgEncodeCshlLongRnaSeqHwp0092205CellTotalPlusRep2 HWP cel tot + 2 bigWig 1.000000 17458116.000000 HWP whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 626 0 0 0 127 127 127 0 0 0 expression 0 longLabel HWP whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel HWP cel tot + 2\ subGroups view=PlusSignal cellType=t3HWP localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqHwp0092205CellTotalPlusRep2\ type bigWig 1.000000 17458116.000000\ encTfChipPkENCFF872YNU K562 MCM5 2 narrowPeak Transcription Factor ChIP-seq Peaks of MCM5 in K562 from ENCODE 3 (ENCFF872YNU) 1 626 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MCM5 in K562 from ENCODE 3 (ENCFF872YNU)\ parent encTfChipPk off\ shortLabel K562 MCM5 2\ subGroups cellType=K562 factor=MCM5\ track encTfChipPkENCFF872YNU\ wgEncodeAwgTfbsSydhMcf10aesStat3Etoh01cUniPk MCF10+E1/12 STAT3 narrowPeak MCF10AErSrc (EtOH.01 12h) TFBS Uniform Peaks of STAT3 ENCODE/Harvard/Analysis 1 626 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10AErSrc (EtOH.01 12h) TFBS Uniform Peaks of STAT3 ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF10+E1/12 STAT3\ subGroups tier=a30 cellType=MCF10AERSRC factor=STAT3 lab=Harvard\ track wgEncodeAwgTfbsSydhMcf10aesStat3Etoh01cUniPk\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_ctss_rev Mcf7ToEgf1_02hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_reverse 0 626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep3.CNhs12744.13170-141C2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13170-141C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_tpm_rev Mcf7ToEgf1_02hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_reverse 1 626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep3.CNhs12744.13170-141C2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13170-141C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsSknshJundIggrabPk SKSH JunD IgR narrowPeak SK-N-SH JunD IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 626 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH JunD IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel SKSH JunD IgR\ subGroups view=Peaks factor=JUND cellType=t2SKNSH control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsSknshJundIggrabPk\ type narrowPeak\ wgEncodeUwHistoneWerirb1H3k04me3StdPkRep1 WERI H3K4M3 Pk 1 narrowPeak WERI-Rb-1 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 626 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WERI-Rb-1 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel WERI H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3WERIRB1 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneWerirb1H3k04me3StdPkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549Sin3ak20V0422111Etoh02PkRep2 A549 Sin3A EtOH 2 broadPeak A549 Sin3Ak-20 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 627 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 Sin3Ak-20 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 Sin3A EtOH 2\ subGroups view=Peaks factor=SIN3AK20 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Sin3ak20V0422111Etoh02PkRep2\ type broadPeak\ encTfChipPkENCFF399GAE K562 MCM7 1 narrowPeak Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF399GAE) 1 627 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF399GAE)\ parent encTfChipPk off\ shortLabel K562 MCM7 1\ subGroups cellType=K562 factor=MCM7\ track encTfChipPkENCFF399GAE\ wgEncodeAwgTfbsSydhMcf10aesStat3Etoh01bUniPk MCF10+E1/4 STAT3 narrowPeak MCF10AErSrc (EtOH.01 4h) TFBS Uniform Peaks of STAT3 ENCODE/Harvard/Analysis 1 627 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10AErSrc (EtOH.01 4h) TFBS Uniform Peaks of STAT3 ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF10+E1/4 STAT3\ subGroups tier=a30 cellType=MCF10AERSRC factor=STAT3 lab=Harvard\ track wgEncodeAwgTfbsSydhMcf10aesStat3Etoh01bUniPk\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_ctss_fwd Mcf7ToEgf1_02hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_forward 0 627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep1.CNhs12427.13039-139F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13039-139F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_tpm_fwd Mcf7ToEgf1_02hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_forward 1 627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep1.CNhs12427.13039-139F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13039-139F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhdf70717012CellTotalAlnRep1 NHDF cel tot A 1 bam NHDF whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 627 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHDF whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHDF cel tot A 1\ subGroups view=Alignments cellType=t3NHDF localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhdf70717012CellTotalAlnRep1\ type bam\ wgEncodeSydhTfbsSknshJundIggrabSig SKSH JunD IgR bigWig 1.000000 496.000000 SK-N-SH JunD IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 627 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH JunD IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel SKSH JunD IgR\ subGroups view=Signal factor=JUND cellType=t2SKNSH control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsSknshJundIggrabSig\ type bigWig 1.000000 496.000000\ wgEncodeUwHistoneWerirb1H3k04me3StdRawRep1 WERI H3K4M3 Sg 1 bigWig 1.000000 4012.000000 WERI-Rb-1 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 627 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WERI-Rb-1 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel WERI H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3WERIRB1 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneWerirb1H3k04me3StdRawRep1\ type bigWig 1.000000 4012.000000\ wgEncodeHaibTfbsA549Sin3ak20V0422111Etoh02RawRep2 A549 Sin3A EtOH 2 bigWig 0.101356 491.144989 A549 Sin3Ak-20 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 628 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Sin3Ak-20 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 Sin3A EtOH 2\ subGroups view=RawSignal factor=SIN3AK20 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Sin3ak20V0422111Etoh02RawRep2\ type bigWig 0.101356 491.144989\ encTfChipPkENCFF278ONE K562 MCM7 2 narrowPeak Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF278ONE) 1 628 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF278ONE)\ parent encTfChipPk off\ shortLabel K562 MCM7 2\ subGroups cellType=K562 factor=MCM7\ track encTfChipPkENCFF278ONE\ wgEncodeAwgTfbsSydhMcf10aesStat3Tam112hHvdUniPk MCF10+T12 STAT3 narrowPeak MCF10A-Er-Src (TAM 12h) TFBS Uniform Peaks of STAT3 ENCODE/Harvard/Analysis 1 628 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A-Er-Src (TAM 12h) TFBS Uniform Peaks of STAT3 ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF10+T12 STAT3\ subGroups tier=a30 cellType=MCF10AERSRC factor=STAT3 lab=Harvard\ track wgEncodeAwgTfbsSydhMcf10aesStat3Tam112hHvdUniPk\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_ctss_rev Mcf7ToEgf1_02hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_reverse 0 628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep1.CNhs12427.13039-139F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13039-139F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_tpm_rev Mcf7ToEgf1_02hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_reverse 1 628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep1.CNhs12427.13039-139F6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13039-139F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhdf00608013CellTotalAlnRep2 NHDF cel tot A 2 bam NHDF whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 628 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHDF whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHDF cel tot A 2\ subGroups view=Alignments cellType=t3NHDF localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhdf00608013CellTotalAlnRep2\ type bam\ wgEncodeSydhTfbsSknshMxi1IggrabPk SKSH Mxi1 IgR narrowPeak SK-N-SH Mxi1 (AF4185) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 628 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH Mxi1 (AF4185) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel SKSH Mxi1 IgR\ subGroups view=Peaks factor=MXI1 cellType=t2SKNSH control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsSknshMxi1IggrabPk\ type narrowPeak\ wgEncodeUwHistoneWerirb1H3k04me3StdHotspotsRep2 WERI H3K4M3 Ht 2 broadPeak WERI-Rb-1 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 628 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WERI-Rb-1 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel WERI H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3WERIRB1 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneWerirb1H3k04me3StdHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549Six5V0422111Etoh02PkRep1 A549 SIX5 EtOH 1 broadPeak A549 SIX5 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 629 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 SIX5 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 SIX5 EtOH 1\ subGroups view=Peaks factor=SIX5 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Six5V0422111Etoh02PkRep1\ type broadPeak\ encTfChipPkENCFF452SVO K562 MCM7 3 narrowPeak Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF452SVO) 1 629 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF452SVO)\ parent encTfChipPk off\ shortLabel K562 MCM7 3\ subGroups cellType=K562 factor=MCM7\ track encTfChipPkENCFF452SVO\ wgEncodeAwgTfbsSydhMcf10aesStat3TamUniPk MCF10+T36 STAT3 narrowPeak MCF10A-Er-Src (TAM 36h) TFBS Uniform Peaks of STAT3 ENCODE/Harvard/Analysis 1 629 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A-Er-Src (TAM 36h) TFBS Uniform Peaks of STAT3 ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF10+T36 STAT3\ subGroups tier=a30 cellType=MCF10AERSRC factor=STAT3 lab=Harvard\ track wgEncodeAwgTfbsSydhMcf10aesStat3TamUniPk\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_ctss_fwd Mcf7ToEgf1_02hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_forward 0 629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep2.CNhs12484.13105-140D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13105-140D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_tpm_fwd Mcf7ToEgf1_02hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_forward 1 629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep2.CNhs12484.13105-140D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13105-140D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhdfCellTotalContigs NHDF cel tot C bed 6 + NHDF whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 629 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHDF whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel NHDF cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3NHDF localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqNhdfCellTotalContigs\ type bed 6 +\ wgEncodeSydhTfbsSknshMxi1IggrabSig SKSH Mxi1 IgR bigWig 1.000000 488.000000 SK-N-SH Mxi1 (AF4185) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 629 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Mxi1 (AF4185) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel SKSH Mxi1 IgR\ subGroups view=Signal factor=MXI1 cellType=t2SKNSH control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsSknshMxi1IggrabSig\ type bigWig 1.000000 488.000000\ wgEncodeUwHistoneWerirb1H3k04me3StdPkRep2 WERI H3K4M3 Pk 2 narrowPeak WERI-Rb-1 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 629 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WERI-Rb-1 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel WERI H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3WERIRB1 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneWerirb1H3k04me3StdPkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549Six5V0422111Etoh02RawRep1 A549 SIX5 EtOH 1 bigWig 0.115988 150.263000 A549 SIX5 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 630 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 SIX5 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 SIX5 EtOH 1\ subGroups view=RawSignal factor=SIX5 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Six5V0422111Etoh02RawRep1\ type bigWig 0.115988 150.263000\ encTfChipPkENCFF577UJR K562 MEF2A narrowPeak Transcription Factor ChIP-seq Peaks of MEF2A in K562 from ENCODE 3 (ENCFF577UJR) 1 630 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MEF2A in K562 from ENCODE 3 (ENCFF577UJR)\ parent encTfChipPk off\ shortLabel K562 MEF2A\ subGroups cellType=K562 factor=MEF2A\ track encTfChipPkENCFF577UJR\ wgEncodeAwgTfbsSydhMcf10aesStat3Etoh01UniPk MCF10AEr+E1 STAT3 narrowPeak MCF10A-Er-Src (EtOH .01) TFBS Uniform Peaks of STAT3 ENCODE/Harvard/Analysis 1 630 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A-Er-Src (EtOH .01) TFBS Uniform Peaks of STAT3 ENCODE/Harvard/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel MCF10AEr+E1 STAT3\ subGroups tier=a30 cellType=MCF10AERSRC factor=STAT3 lab=Harvard\ track wgEncodeAwgTfbsSydhMcf10aesStat3Etoh01UniPk\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_ctss_rev Mcf7ToEgf1_02hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_reverse 0 630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep2.CNhs12484.13105-140D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13105-140D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_tpm_rev Mcf7ToEgf1_02hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_reverse 1 630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep2.CNhs12484.13105-140D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13105-140D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhdfCellTotalJunctions NHDF cel tot J bed 6 + NHDF whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 630 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHDF whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel NHDF cel tot J\ subGroups view=Junctions cellType=t3NHDF localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqNhdfCellTotalJunctions\ type bed 6 +\ wgEncodeSydhTfbsSknshNrf1IggrabPk SKSH Nrf1 IgR narrowPeak SK-N-SH Nrf1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 630 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH Nrf1 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel SKSH Nrf1 IgR\ subGroups view=Peaks factor=NRF1 cellType=t2SKNSH control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsSknshNrf1IggrabPk\ type narrowPeak\ wgEncodeUwHistoneWerirb1H3k04me3StdRawRep2 WERI H3K4M3 Sg 2 bigWig 1.000000 3606.000000 WERI-Rb-1 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 630 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WERI-Rb-1 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel WERI H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3WERIRB1 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneWerirb1H3k04me3StdRawRep2\ type bigWig 1.000000 3606.000000\ wgEncodeHaibTfbsA549Six5V0422111Etoh02PkRep2 A549 SIX5 EtOH 2 broadPeak A549 SIX5 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 631 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 SIX5 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 SIX5 EtOH 2\ subGroups view=Peaks factor=SIX5 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Six5V0422111Etoh02PkRep2\ type broadPeak\ encTfChipPkENCFF613RNG K562 MEIS2 narrowPeak Transcription Factor ChIP-seq Peaks of MEIS2 in K562 from ENCODE 3 (ENCFF613RNG) 1 631 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MEIS2 in K562 from ENCODE 3 (ENCFF613RNG)\ parent encTfChipPk off\ shortLabel K562 MEIS2\ subGroups cellType=K562 factor=MEIS2\ track encTfChipPkENCFF613RNG\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_ctss_fwd Mcf7ToEgf1_02hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_forward 0 631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep3.CNhs12746.13171-141C3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13171-141C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_tpm_fwd Mcf7ToEgf1_02hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_forward 1 631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep3.CNhs12746.13171-141C3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13171-141C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsUwNb4CtcfUniPk NB4 CTCF narrowPeak NB4 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 631 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NB4 CTCF\ subGroups tier=a30 cellType=NB4 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwNb4CtcfUniPk\ wgEncodeCshlLongRnaSeqNhdf70717012CellTotalMinusRep1 NHDF cel tot - 1 bigWig 1.000000 8564766.000000 NHDF whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 631 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHDF whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHDF cel tot - 1\ subGroups view=MinusSignal cellType=t3NHDF localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhdf70717012CellTotalMinusRep1\ type bigWig 1.000000 8564766.000000\ wgEncodeSydhTfbsSknshNrf1IggrabSig SKSH Nrf1 IgR bigWig 1.000000 416.000000 SK-N-SH Nrf1 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 631 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Nrf1 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel SKSH Nrf1 IgR\ subGroups view=Signal factor=NRF1 cellType=t2SKNSH control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsSknshNrf1IggrabSig\ type bigWig 1.000000 416.000000\ wgEncodeUwHistoneWerirb1InputStdRawRep1 WERI In Sg 1 bigWig 1.000000 9496.000000 WERI-Rb-1 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 631 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WERI-Rb-1 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg18\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel WERI In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3WERIRB1 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneWerirb1InputStdRawRep1\ type bigWig 1.000000 9496.000000\ wgEncodeHaibTfbsA549Six5V0422111Etoh02RawRep2 A549 SIX5 EtOH 2 bigWig 0.125356 164.718002 A549 SIX5 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 632 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 SIX5 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 SIX5 EtOH 2\ subGroups view=RawSignal factor=SIX5 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Six5V0422111Etoh02RawRep2\ type bigWig 0.125356 164.718002\ encTfChipPkENCFF670ZCR K562 MGA narrowPeak Transcription Factor ChIP-seq Peaks of MGA in K562 from ENCODE 3 (ENCFF670ZCR) 1 632 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MGA in K562 from ENCODE 3 (ENCFF670ZCR)\ parent encTfChipPk off\ shortLabel K562 MGA\ subGroups cellType=K562 factor=MGA\ track encTfChipPkENCFF670ZCR\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_ctss_rev Mcf7ToEgf1_02hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_reverse 0 632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep3.CNhs12746.13171-141C3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13171-141C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_tpm_rev Mcf7ToEgf1_02hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_reverse 1 632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep3.CNhs12746.13171-141C3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13171-141C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsSydhNb4MaxUniPk NB4 MAX narrowPeak NB4 TFBS Uniform Peaks of Max from ENCODE/Stanford/Analysis 1 632 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 TFBS Uniform Peaks of Max from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NB4 MAX\ subGroups tier=a30 cellType=NB4 factor=MAX lab=Stanford\ track wgEncodeAwgTfbsSydhNb4MaxUniPk\ wgEncodeCshlLongRnaSeqNhdf00608013CellTotalMinusRep2 NHDF cel tot - 2 bigWig 1.000000 10792173.000000 NHDF whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 632 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHDF whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHDF cel tot - 2\ subGroups view=MinusSignal cellType=t3NHDF localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhdf00608013CellTotalMinusRep2\ type bigWig 1.000000 10792173.000000\ wgEncodeSydhTfbsSknshP300bIggrabPk SKSH p300 IgR narrowPeak SK-N-SH p300 (SC-584) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 632 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH p300 (SC-584) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel SKSH p300 IgR\ subGroups view=Peaks factor=P300SC584 cellType=t2SKNSH control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsSknshP300bIggrabPk\ type narrowPeak\ wgEncodeUwHistoneWi38H3k04me3OhtamStdHotspotsRep1 WI38 H3K4M3 Ht 1 broadPeak WI-38 H3K4me3 4-OHTAM 20 nM 72 hr Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 632 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 H3K4me3 4-OHTAM 20 nM 72 hr Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel WI38 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3WI38 treatment=OHTAM rep=rep1\ track wgEncodeUwHistoneWi38H3k04me3OhtamStdHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549Sp1V0422111Etoh02PkRep1 A549 SP1 EtOH 1 broadPeak A549 SP1 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 633 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 SP1 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 SP1 EtOH 1\ subGroups view=Peaks factor=SP1 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Sp1V0422111Etoh02PkRep1\ type broadPeak\ encTfChipPkENCFF365NKO K562 MIER1 narrowPeak Transcription Factor ChIP-seq Peaks of MIER1 in K562 from ENCODE 3 (ENCFF365NKO) 1 633 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MIER1 in K562 from ENCODE 3 (ENCFF365NKO)\ parent encTfChipPk off\ shortLabel K562 MIER1\ subGroups cellType=K562 factor=MIER1\ track encTfChipPkENCFF365NKO\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_ctss_fwd Mcf7ToEgf1_03hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_forward 0 633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep1.CNhs12428.13040-139F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13040-139F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_tpm_fwd Mcf7ToEgf1_03hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_forward 1 633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep1.CNhs12428.13040-139F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13040-139F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsSydhNb4CmycUniPk NB4 MYC narrowPeak NB4 TFBS Uniform Peaks of c-Myc from ENCODE/Stanford/Analysis 1 633 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 TFBS Uniform Peaks of c-Myc from ENCODE/Stanford/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NB4 MYC\ subGroups tier=a30 cellType=NB4 factor=MYC lab=Stanford\ track wgEncodeAwgTfbsSydhNb4CmycUniPk\ wgEncodeCshlLongRnaSeqNhdf70717012CellTotalPlusRep1 NHDF cel tot + 1 bigWig 1.000000 8110550.000000 NHDF whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 633 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHDF whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHDF cel tot + 1\ subGroups view=PlusSignal cellType=t3NHDF localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhdf70717012CellTotalPlusRep1\ type bigWig 1.000000 8110550.000000\ wgEncodeSydhTfbsSknshP300bIggrabSig SKSH p300 IgR bigWig 1.000000 540.000000 SK-N-SH p300 (SC-584) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 633 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH p300 (SC-584) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel SKSH p300 IgR\ subGroups view=Signal factor=P300SC584 cellType=t2SKNSH control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsSknshP300bIggrabSig\ type bigWig 1.000000 540.000000\ wgEncodeUwHistoneWi38H3k04me3OhtamStdPkRep1 WI38 H3K4M3 Pk 1 narrowPeak WI-38 H3K4me3 4-OHTAM 20 nM 72 hr Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 633 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 H3K4me3 4-OHTAM 20 nM 72 hr Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel WI38 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3WI38 treatment=OHTAM rep=rep1\ track wgEncodeUwHistoneWi38H3k04me3OhtamStdPkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549Sp1V0422111Etoh02RawRep1 A549 SP1 EtOH 1 bigWig 0.115566 235.291000 A549 SP1 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 634 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 SP1 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 SP1 EtOH 1\ subGroups view=RawSignal factor=SP1 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Sp1V0422111Etoh02RawRep1\ type bigWig 0.115566 235.291000\ encTfChipPkENCFF497XOD K562 MITF 1 narrowPeak Transcription Factor ChIP-seq Peaks of MITF in K562 from ENCODE 3 (ENCFF497XOD) 1 634 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MITF in K562 from ENCODE 3 (ENCFF497XOD)\ parent encTfChipPk off\ shortLabel K562 MITF 1\ subGroups cellType=K562 factor=MITF\ track encTfChipPkENCFF497XOD\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_ctss_rev Mcf7ToEgf1_03hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_reverse 0 634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep1.CNhs12428.13040-139F7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13040-139F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_tpm_rev Mcf7ToEgf1_03hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_reverse 1 634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep1.CNhs12428.13040-139F7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13040-139F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsSydhNb4Pol2UniPk NB4 POLR2A narrowPeak NB4 TFBS Uniform Peaks of Pol2 from ENCODE/Yale/Analysis 1 634 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 TFBS Uniform Peaks of Pol2 from ENCODE/Yale/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NB4 POLR2A\ subGroups tier=a30 cellType=NB4 factor=POLR2A lab=Yale\ track wgEncodeAwgTfbsSydhNb4Pol2UniPk\ wgEncodeCshlLongRnaSeqNhdf00608013CellTotalPlusRep2 NHDF cel tot + 2 bigWig 1.000000 9395375.000000 NHDF whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 634 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHDF whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHDF cel tot + 2\ subGroups view=PlusSignal cellType=t3NHDF localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhdf00608013CellTotalPlusRep2\ type bigWig 1.000000 9395375.000000\ wgEncodeSydhTfbsSknshRad21IggrabPk SKSH Rad21 IgR narrowPeak SK-N-SH Rad21 IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 634 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH Rad21 IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel SKSH Rad21 IgR\ subGroups view=Peaks factor=RAD21 cellType=t2SKNSH control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsSknshRad21IggrabPk\ type narrowPeak\ wgEncodeUwHistoneWi38H3k04me3OhtamStdRawRep1 WI38 H3K4M3 Sg 1 bigWig 1.000000 3951.000000 WI-38 H3K4me3 4-OHTAM 20 nM 72 hr Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 634 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WI-38 H3K4me3 4-OHTAM 20 nM 72 hr Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel WI38 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3WI38 treatment=OHTAM rep=rep1\ track wgEncodeUwHistoneWi38H3k04me3OhtamStdRawRep1\ type bigWig 1.000000 3951.000000\ wgEncodeHaibTfbsA549Sp1V0422111Etoh02PkRep2 A549 SP1 EtOH 2 broadPeak A549 SP1 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 635 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 SP1 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 SP1 EtOH 2\ subGroups view=Peaks factor=SP1 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Sp1V0422111Etoh02PkRep2\ type broadPeak\ encTfChipPkENCFF616LVN K562 MITF 2 narrowPeak Transcription Factor ChIP-seq Peaks of MITF in K562 from ENCODE 3 (ENCFF616LVN) 1 635 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MITF in K562 from ENCODE 3 (ENCFF616LVN)\ parent encTfChipPk off\ shortLabel K562 MITF 2\ subGroups cellType=K562 factor=MITF\ track encTfChipPkENCFF616LVN\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_ctss_fwd Mcf7ToEgf1_03hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_forward 0 635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep2.CNhs12485.13106-140E1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13106-140E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_tpm_fwd Mcf7ToEgf1_03hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_forward 1 635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep2.CNhs12485.13106-140E1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13106-140E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsBroadNhaCtcfUniPk NH-A CTCF narrowPeak NH-A TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis 1 635 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NH-A TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NH-A CTCF\ subGroups tier=a30 cellType=NHA factor=CTCF lab=Broad\ track wgEncodeAwgTfbsBroadNhaCtcfUniPk\ wgEncodeCshlLongRnaSeqNhekCellLongnonpolyaAlnRep1 NHEK cel pA- A 1 bam NHEK whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 635 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHEK cel pA- A 1\ subGroups view=Alignments cellType=t3NHEK localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekCellLongnonpolyaAlnRep1\ type bam\ wgEncodeSydhTfbsSknshRad21IggrabSig SKSH Rad21 IgR bigWig 1.000000 464.000000 SK-N-SH Rad21 IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 635 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Rad21 IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel SKSH Rad21 IgR\ subGroups view=Signal factor=RAD21 cellType=t2SKNSH control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsSknshRad21IggrabSig\ type bigWig 1.000000 464.000000\ wgEncodeUwHistoneWi38H3k04me3OhtamStdHotspotsRep2 WI38 H3K4M3 Ht 2 broadPeak WI-38 H3K4me3 4-OHTAM 20 nM 72 hr Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 635 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 H3K4me3 4-OHTAM 20 nM 72 hr Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel WI38 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3WI38 treatment=OHTAM rep=rep2\ track wgEncodeUwHistoneWi38H3k04me3OhtamStdHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549Sp1V0422111Etoh02RawRep2 A549 SP1 EtOH 2 bigWig 0.092455 177.190002 A549 SP1 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 636 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 SP1 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 SP1 EtOH 2\ subGroups view=RawSignal factor=SP1 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Sp1V0422111Etoh02RawRep2\ type bigWig 0.092455 177.190002\ encTfChipPkENCFF197OGH K562 MLLT1 1 narrowPeak Transcription Factor ChIP-seq Peaks of MLLT1 in K562 from ENCODE 3 (ENCFF197OGH) 1 636 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MLLT1 in K562 from ENCODE 3 (ENCFF197OGH)\ parent encTfChipPk off\ shortLabel K562 MLLT1 1\ subGroups cellType=K562 factor=MLLT1\ track encTfChipPkENCFF197OGH\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_ctss_rev Mcf7ToEgf1_03hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_reverse 0 636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep2.CNhs12485.13106-140E1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13106-140E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_tpm_rev Mcf7ToEgf1_03hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_reverse 1 636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep2.CNhs12485.13106-140E1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13106-140E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsBroadNhaEzh239875UniPk NH-A EZH2 narrowPeak NH-A TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis 1 636 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NH-A TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NH-A EZH2\ subGroups tier=a30 cellType=NHA factor=EZH2 lab=Broad\ track wgEncodeAwgTfbsBroadNhaEzh239875UniPk\ wgEncodeCshlLongRnaSeqNhekCellLongnonpolyaAlnRep2 NHEK cel pA- A 2 bam NHEK whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 636 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHEK cel pA- A 2\ subGroups view=Alignments cellType=t3NHEK localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhekCellLongnonpolyaAlnRep2\ type bam\ wgEncodeSydhTfbsSknshRfx5IggrabPk SKSH RFX5 IgR narrowPeak SK-N-SH RFX5 (200-401-194) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 636 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH RFX5 (200-401-194) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel SKSH RFX5 IgR\ subGroups view=Peaks factor=RFX5200401194 cellType=t2SKNSH control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsSknshRfx5IggrabPk\ type narrowPeak\ wgEncodeUwHistoneWi38H3k04me3OhtamStdPkRep2 WI38 H3K4M3 Pk 2 narrowPeak WI-38 H3K4me3 4-OHTAM 20 nM 72 hr Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 636 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 H3K4me3 4-OHTAM 20 nM 72 hr Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel WI38 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3WI38 treatment=OHTAM rep=rep2\ track wgEncodeUwHistoneWi38H3k04me3OhtamStdPkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549Taf1V0422111Etoh02PkRep1 A549 TAF1 EtOH 1 broadPeak A549 TAF1 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 637 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 TAF1 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 TAF1 EtOH 1\ subGroups view=Peaks factor=TAF1 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Taf1V0422111Etoh02PkRep1\ type broadPeak\ encTfChipPkENCFF440JJW K562 MLLT1 2 narrowPeak Transcription Factor ChIP-seq Peaks of MLLT1 in K562 from ENCODE 3 (ENCFF440JJW) 1 637 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MLLT1 in K562 from ENCODE 3 (ENCFF440JJW)\ parent encTfChipPk off\ shortLabel K562 MLLT1 2\ subGroups cellType=K562 factor=MLLT1\ track encTfChipPkENCFF440JJW\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_ctss_fwd Mcf7ToEgf1_03hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_forward 0 637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep3.CNhs12747.13172-141C4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13172-141C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_tpm_fwd Mcf7ToEgf1_03hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_forward 1 637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep3.CNhs12747.13172-141C4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13172-141C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsBroadNhdfadCtcfUniPk NHDF-Ad CTCF narrowPeak NHDF-Ad TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis 1 637 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-Ad TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NHDF-Ad CTCF\ subGroups tier=a30 cellType=NHDFAD factor=CTCF lab=Broad\ track wgEncodeAwgTfbsBroadNhdfadCtcfUniPk\ wgEncodeCshlLongRnaSeqNhekCellPamContigsV2 NHEK cel pA- C bed 6 + NHEK whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 637 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel NHEK cel pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3NHEK localization=CELL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqNhekCellPamContigsV2\ type bed 6 +\ wgEncodeSydhTfbsSknshRfx5IggrabSig SKSH RFX5 IgR bigWig 1.000000 536.000000 SK-N-SH RFX5 (200-401-194) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 637 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH RFX5 (200-401-194) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel SKSH RFX5 IgR\ subGroups view=Signal factor=RFX5200401194 cellType=t2SKNSH control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsSknshRfx5IggrabSig\ type bigWig 1.000000 536.000000\ wgEncodeUwHistoneWi38H3k04me3OhtamStdRawRep2 WI38 H3K4M3 Sg 2 bigWig 1.000000 6352.000000 WI-38 H3K4me3 4-OHTAM 20 nM 72 hr Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 637 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WI-38 H3K4me3 4-OHTAM 20 nM 72 hr Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel WI38 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3WI38 treatment=OHTAM rep=rep2\ track wgEncodeUwHistoneWi38H3k04me3OhtamStdRawRep2\ type bigWig 1.000000 6352.000000\ wgEncodeHaibTfbsA549Taf1V0422111Etoh02RawRep1 A549 TAF1 EtOH 1 bigWig 0.125052 235.285995 A549 TAF1 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 638 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 TAF1 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 TAF1 EtOH 1\ subGroups view=RawSignal factor=TAF1 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Taf1V0422111Etoh02RawRep1\ type bigWig 0.125052 235.285995\ encTfChipPkENCFF059ONJ K562 MNT 1 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF059ONJ) 1 638 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF059ONJ)\ parent encTfChipPk off\ shortLabel K562 MNT 1\ subGroups cellType=K562 factor=MNT\ track encTfChipPkENCFF059ONJ\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_ctss_rev Mcf7ToEgf1_03hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_reverse 0 638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep3.CNhs12747.13172-141C4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13172-141C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_tpm_rev Mcf7ToEgf1_03hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_reverse 1 638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep3.CNhs12747.13172-141C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13172-141C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsBroadNhdfadEzh239875UniPk NHDF-Ad EZH2 narrowPeak NHDF-Ad TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis 1 638 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-Ad TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NHDF-Ad EZH2\ subGroups tier=a30 cellType=NHDFAD factor=EZH2 lab=Broad\ track wgEncodeAwgTfbsBroadNhdfadEzh239875UniPk\ wgEncodeCshlLongRnaSeqNhekCellPamJunctions NHEK cel pA- J bed 6 + NHEK whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 638 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel NHEK cel pA- J\ subGroups view=Junctions cellType=t3NHEK localization=CELL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqNhekCellPamJunctions\ type bed 6 +\ wgEncodeSydhTfbsSknshSmc3IggrabPk SKSH SMC3 IgR narrowPeak SK-N-SH SMC3 (ab9263) IgG-rab ChIP-seq Peaks from ENCODE/SYDH 3 638 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH SMC3 (ab9263) IgG-rab ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel SKSH SMC3 IgR\ subGroups view=Peaks factor=SMC3ab9263 cellType=t2SKNSH control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsSknshSmc3IggrabPk\ type narrowPeak\ wgEncodeUwHistoneWi38H3k04me3StdHotspotsRep1 WI38 H3K4M3 Ht 1 broadPeak WI-38 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW 2 638 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 H3K4me3 Histone Mod ChIP-seq Hotspots 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel WI38 H3K4M3 Ht 1\ subGroups view=Hot factor=H3K04ME3 cellType=t3WI38 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneWi38H3k04me3StdHotspotsRep1\ type broadPeak\ wgEncodeHaibTfbsA549Taf1V0422111Etoh02PkRep2 A549 TAF1 EtOH 2 broadPeak A549 TAF1 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 639 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 TAF1 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 TAF1 EtOH 2\ subGroups view=Peaks factor=TAF1 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Taf1V0422111Etoh02PkRep2\ type broadPeak\ encTfChipPkENCFF973OME K562 MNT 2 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF973OME) 1 639 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF973OME)\ parent encTfChipPk off\ shortLabel K562 MNT 2\ subGroups cellType=K562 factor=MNT\ track encTfChipPkENCFF973OME\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_ctss_fwd Mcf7ToEgf1_03hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_forward 0 639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep1.CNhs12429.13041-139F8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13041-139F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_tpm_fwd Mcf7ToEgf1_03hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_forward 1 639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep1.CNhs12429.13041-139F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13041-139F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsUwNhdfneoCtcfUniPk NHDF-neo CTCF narrowPeak NHDF-neo TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 639 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHDF-neo TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NHDF-neo CTCF\ subGroups tier=a30 cellType=NHDFNEO factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwNhdfneoCtcfUniPk\ wgEncodeCshlLongRnaSeqNhekCellLongnonpolyaMinusRawSigRep1 NHEK cel pA- - 1 bigWig 1.000000 896693.000000 NHEK whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 639 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHEK cel pA- - 1\ subGroups view=MinusSignal cellType=t3NHEK localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekCellLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 896693.000000\ wgEncodeSydhTfbsSknshSmc3IggrabSig SKSH SMC3 IgR bigWig 1.000000 456.000000 SK-N-SH SMC3 (ab9263) IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 639 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH SMC3 (ab9263) IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel SKSH SMC3 IgR\ subGroups view=Signal factor=SMC3ab9263 cellType=t2SKNSH control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsSknshSmc3IggrabSig\ type bigWig 1.000000 456.000000\ wgEncodeUwHistoneWi38H3k04me3StdPkRep1 WI38 H3K4M3 Pk 1 narrowPeak WI-38 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW 3 639 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 H3K4me3 Histone Mod ChIP-seq Peaks 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel WI38 H3K4M3 Pk 1\ subGroups view=Peaks factor=H3K04ME3 cellType=t3WI38 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneWi38H3k04me3StdPkRep1\ type narrowPeak\ wgEncodeHaibTfbsA549Taf1V0422111Etoh02RawRep2 A549 TAF1 EtOH 2 bigWig 0.123280 203.781006 A549 TAF1 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 640 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 TAF1 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 TAF1 EtOH 2\ subGroups view=RawSignal factor=TAF1 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Taf1V0422111Etoh02RawRep2\ type bigWig 0.123280 203.781006\ encTfChipPkENCFF567GSX K562 MNT 3 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF567GSX) 1 640 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF567GSX)\ parent encTfChipPk off\ shortLabel K562 MNT 3\ subGroups cellType=K562 factor=MNT\ track encTfChipPkENCFF567GSX\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_ctss_rev Mcf7ToEgf1_03hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_reverse 0 640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep1.CNhs12429.13041-139F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13041-139F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_tpm_rev Mcf7ToEgf1_03hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_reverse 1 640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep1.CNhs12429.13041-139F8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13041-139F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCellLongnonpolyaMinusRawSigRep2 NHEK cel pA- - 2 bigWig 1.000000 877862.000000 NHEK whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 640 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHEK cel pA- - 2\ subGroups view=MinusSignal cellType=t3NHEK localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhekCellLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 877862.000000\ wgEncodeAwgTfbsBroadNhekCtcfUniPk NHEK CTCF b narrowPeak NHEK TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis 1 640 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHEK TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NHEK CTCF b\ subGroups tier=a30 cellType=NHEK factor=CTCF lab=Broad\ track wgEncodeAwgTfbsBroadNhekCtcfUniPk\ wgEncodeSydhTfbsSknshInputIggrabSig SKSH Inpt IgR bigWig 1.000000 16004.000000 SK-N-SH Input IgG-rab ChIP-seq Signal from ENCODE/SYDH 2 640 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Input IgG-rab ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel SKSH Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t2SKNSH control=IGGRAB treatment=aNONE\ track wgEncodeSydhTfbsSknshInputIggrabSig\ type bigWig 1.000000 16004.000000\ wgEncodeUwHistoneWi38H3k04me3StdRawRep1 WI38 H3K4M3 Sg 1 bigWig 1.000000 2490.000000 WI-38 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 640 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WI-38 H3K4me3 Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel WI38 H3K4M3 Sg 1\ subGroups view=zRSig factor=H3K04ME3 cellType=t3WI38 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneWi38H3k04me3StdRawRep1\ type bigWig 1.000000 2490.000000\ wgEncodeHaibTfbsA549Tcf12V0422111Etoh02PkRep1 A549 TCF12 EtOH 1 broadPeak A549 TCF12 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 641 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 TCF12 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 TCF12 EtOH 1\ subGroups view=Peaks factor=TCF12 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Tcf12V0422111Etoh02PkRep1\ type broadPeak\ wgEncodeSydhTfbsGm08714Znf274UcdPk GM14 Z274 UCD narrowPeak GM08714 ZNF274 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 641 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM08714 ZNF274 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM14 Z274 UCD\ subGroups view=Peaks factor=ZNF274 cellType=t3GM08714 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsGm08714Znf274UcdPk\ type narrowPeak\ encTfChipPkENCFF769GYG K562 MTA1 narrowPeak Transcription Factor ChIP-seq Peaks of MTA1 in K562 from ENCODE 3 (ENCFF769GYG) 1 641 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MTA1 in K562 from ENCODE 3 (ENCFF769GYG)\ parent encTfChipPk off\ shortLabel K562 MTA1\ subGroups cellType=K562 factor=MTA1\ track encTfChipPkENCFF769GYG\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_ctss_fwd Mcf7ToEgf1_03hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_forward 0 641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep2.CNhs12486.13107-140E2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13107-140E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_tpm_fwd Mcf7ToEgf1_03hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_forward 1 641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep2.CNhs12486.13107-140E2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13107-140E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCellLongnonpolyaPlusRawSigRep1 NHEK cel pA- + 1 bigWig 1.000000 947488.000000 NHEK whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 641 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHEK cel pA- + 1\ subGroups view=PlusSignal cellType=t3NHEK localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekCellLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 947488.000000\ wgEncodeAwgTfbsUtaNhekCtcfUniPk NHEK CTCF t narrowPeak NHEK TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 641 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHEK TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NHEK CTCF t\ subGroups tier=a30 cellType=NHEK factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaNhekCtcfUniPk\ wgEncodeUwHistoneWi38H3k04me3StdHotspotsRep2 WI38 H3K4M3 Ht 2 broadPeak WI-38 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW 2 641 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 H3K4me3 Histone Mod ChIP-seq Hotspots 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewHot off\ shortLabel WI38 H3K4M3 Ht 2\ subGroups view=Hot factor=H3K04ME3 cellType=t3WI38 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneWi38H3k04me3StdHotspotsRep2\ type broadPeak\ wgEncodeHaibTfbsA549Tcf12V0422111Etoh02RawRep1 A549 TCF12 EtOH 1 bigWig 0.178147 165.320999 A549 TCF12 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 642 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 TCF12 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 TCF12 EtOH 1\ subGroups view=RawSignal factor=TCF12 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Tcf12V0422111Etoh02RawRep1\ type bigWig 0.178147 165.320999\ wgEncodeSydhTfbsGm08714Znf274UcdSig GM14 Z274 UCD bigWig 1.000000 15611.000000 GM08714 ZNF274 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 642 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM08714 ZNF274 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM14 Z274 UCD\ subGroups view=Signal factor=ZNF274 cellType=t3GM08714 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsGm08714Znf274UcdSig\ type bigWig 1.000000 15611.000000\ encTfChipPkENCFF410EDG K562 MTA2 1 narrowPeak Transcription Factor ChIP-seq Peaks of MTA2 in K562 from ENCODE 3 (ENCFF410EDG) 1 642 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MTA2 in K562 from ENCODE 3 (ENCFF410EDG)\ parent encTfChipPk off\ shortLabel K562 MTA2 1\ subGroups cellType=K562 factor=MTA2\ track encTfChipPkENCFF410EDG\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_ctss_rev Mcf7ToEgf1_03hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_reverse 0 642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep2.CNhs12486.13107-140E2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13107-140E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_tpm_rev Mcf7ToEgf1_03hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_reverse 1 642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep2.CNhs12486.13107-140E2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13107-140E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCellLongnonpolyaPlusRawSigRep2 NHEK cel pA- + 2 bigWig 1.000000 1154367.000000 NHEK whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 642 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHEK cel pA- + 2\ subGroups view=PlusSignal cellType=t3NHEK localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhekCellLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 1154367.000000\ wgEncodeAwgTfbsUwNhekCtcfUniPk NHEK CTCF w narrowPeak NHEK TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 642 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHEK TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NHEK CTCF w\ subGroups tier=a30 cellType=NHEK factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwNhekCtcfUniPk\ wgEncodeUwHistoneWi38H3k04me3StdPkRep2 WI38 H3K4M3 Pk 2 narrowPeak WI-38 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW 3 642 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 H3K4me3 Histone Mod ChIP-seq Peaks 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewPeaks off\ shortLabel WI38 H3K4M3 Pk 2\ subGroups view=Peaks factor=H3K04ME3 cellType=t3WI38 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneWi38H3k04me3StdPkRep2\ type narrowPeak\ wgEncodeHaibTfbsA549Tcf12V0422111Etoh02PkRep2 A549 TCF12 EtOH 2 broadPeak A549 TCF12 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 643 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 TCF12 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 TCF12 EtOH 2\ subGroups view=Peaks factor=TCF12 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Tcf12V0422111Etoh02PkRep2\ type broadPeak\ wgEncodeSydhTfbsGm08714InputUcdSig GM14 Inpt UCD bigWig 1.000000 25207.000000 GM08714 Input UC Davis ChIP-seq Signal from ENCODE/SYDH 2 643 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM08714 Input UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM14 Inpt UCD\ subGroups view=Signal factor=ZZZINPUTUCD cellType=t3GM08714 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsGm08714InputUcdSig\ type bigWig 1.000000 25207.000000\ encTfChipPkENCFF662MVX K562 MTA2 2 narrowPeak Transcription Factor ChIP-seq Peaks of MTA2 in K562 from ENCODE 3 (ENCFF662MVX) 1 643 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MTA2 in K562 from ENCODE 3 (ENCFF662MVX)\ parent encTfChipPk off\ shortLabel K562 MTA2 2\ subGroups cellType=K562 factor=MTA2\ track encTfChipPkENCFF662MVX\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_ctss_fwd Mcf7ToEgf1_03hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_forward 0 643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep3.CNhs12748.13173-141C5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13173-141C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_tpm_fwd Mcf7ToEgf1_03hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_forward 1 643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep3.CNhs12748.13173-141C5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13173-141C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCellPapAlnRep1 NHEK cel pA+ A 1 bam NHEK whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 643 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHEK cel pA+ A 1\ subGroups view=Alignments cellType=t3NHEK localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekCellPapAlnRep1\ type bam\ wgEncodeAwgTfbsBroadNhekEzh239875UniPk NHEK EZH2 narrowPeak NHEK TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis 1 643 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHEK TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NHEK EZH2\ subGroups tier=a30 cellType=NHEK factor=EZH2 lab=Broad\ track wgEncodeAwgTfbsBroadNhekEzh239875UniPk\ wgEncodeUwHistoneWi38H3k04me3StdRawRep2 WI38 H3K4M3 Sg 2 bigWig 1.000000 3574.000000 WI-38 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW 2 643 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WI-38 H3K4me3 Histone Mod ChIP-seq Raw Sig 2 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel WI38 H3K4M3 Sg 2\ subGroups view=zRSig factor=H3K04ME3 cellType=t3WI38 rep=rep2 treatment=zNone\ track wgEncodeUwHistoneWi38H3k04me3StdRawRep2\ type bigWig 1.000000 3574.000000\ wgEncodeHaibTfbsA549Tcf12V0422111Etoh02RawRep2 A549 TCF12 EtOH 2 bigWig 0.155434 282.113007 A549 TCF12 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 644 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 TCF12 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 TCF12 EtOH 2\ subGroups view=RawSignal factor=TCF12 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Tcf12V0422111Etoh02RawRep2\ type bigWig 0.155434 282.113007\ wgEncodeSydhTfbsGm10847NfkbTnfaIggrabPk GM47 TNF NKB IgR narrowPeak GM10847 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH 3 644 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM10847 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM47 TNF NKB IgR\ subGroups view=Peaks factor=NFKB cellType=t3GM10847 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm10847NfkbTnfaIggrabPk\ type narrowPeak\ encTfChipPkENCFF350YXB K562 MTA3 narrowPeak Transcription Factor ChIP-seq Peaks of MTA3 in K562 from ENCODE 3 (ENCFF350YXB) 1 644 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MTA3 in K562 from ENCODE 3 (ENCFF350YXB)\ parent encTfChipPk off\ shortLabel K562 MTA3\ subGroups cellType=K562 factor=MTA3\ track encTfChipPkENCFF350YXB\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_ctss_rev Mcf7ToEgf1_03hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_reverse 0 644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep3.CNhs12748.13173-141C5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13173-141C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_tpm_rev Mcf7ToEgf1_03hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_reverse 1 644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep3.CNhs12748.13173-141C5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13173-141C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCellPapAlnRep2 NHEK cel pA+ A 2 bam NHEK whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 644 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHEK cel pA+ A 2\ subGroups view=Alignments cellType=t3NHEK localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhekCellPapAlnRep2\ type bam\ wgEncodeAwgTfbsBroadNhekPol2bUniPk NHEK POLR2A narrowPeak NHEK TFBS Uniform Peaks of Pol2(b) from ENCODE/Broad/Analysis 1 644 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHEK TFBS Uniform Peaks of Pol2(b) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NHEK POLR2A\ subGroups tier=a30 cellType=NHEK factor=POLR2A lab=Broad\ track wgEncodeAwgTfbsBroadNhekPol2bUniPk\ wgEncodeUwHistoneWi38InputOhtamStdRawRep1 WI38 In Sg 1 bigWig 1.000000 18598.000000 WI-38 Input 4-OHTAM 20 nM 72 hr Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 644 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WI-38 Input 4-OHTAM 20 nM 72 hr Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel WI38 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3WI38 treatment=OHTAM rep=rep1\ track wgEncodeUwHistoneWi38InputOhtamStdRawRep1\ type bigWig 1.000000 18598.000000\ wgEncodeHaibTfbsA549Tead4sc101184V0422111PkRep1 A549 TEAD4 V11 1 broadPeak A549 TEAD4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 645 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 TEAD4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 TEAD4 V11 1\ subGroups view=Peaks factor=TEAD4SC101184 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsA549Tead4sc101184V0422111PkRep1\ type broadPeak\ wgEncodeSydhTfbsGm10847NfkbTnfaIggrabSig GM47 TNF NKB IgR bigWig 0.000000 7685.799805 GM10847 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 645 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM10847 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM47 TNF NKB IgR\ subGroups view=Signal factor=NFKB cellType=t3GM10847 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm10847NfkbTnfaIggrabSig\ type bigWig 0.000000 7685.799805\ encTfChipPkENCFF970LCB K562 MXI1 narrowPeak Transcription Factor ChIP-seq Peaks of MXI1 in K562 from ENCODE 3 (ENCFF970LCB) 1 645 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MXI1 in K562 from ENCODE 3 (ENCFF970LCB)\ parent encTfChipPk off\ shortLabel K562 MXI1\ subGroups cellType=K562 factor=MXI1\ track encTfChipPkENCFF970LCB\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_ctss_fwd Mcf7ToEgf1_04hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_forward 0 645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep1.CNhs12430.13042-139F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13042-139F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_tpm_fwd Mcf7ToEgf1_04hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_forward 1 645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep1.CNhs12430.13042-139F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13042-139F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCellPapContigsV2 NHEK cel pA+ C bed 6 + NHEK whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 645 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel NHEK cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3NHEK localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqNhekCellPapContigsV2\ type bed 6 +\ wgEncodeAwgTfbsBroadNhlfCtcfUniPk NHLF CTCF b narrowPeak NHLF TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis 1 645 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHLF TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NHLF CTCF b\ subGroups tier=a30 cellType=NHLF factor=CTCF lab=Broad\ track wgEncodeAwgTfbsBroadNhlfCtcfUniPk\ wgEncodeUwHistoneWi38InputStdRawRep1 WI38 In Sg 1 bigWig 1.000000 13078.000000 WI-38 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW 2 645 0 0 0 127 127 127 0 0 0 regulation 0 longLabel WI-38 Input Histone Mod ChIP-seq Raw Sig 1 from ENCODE/UW\ origAssembly hg19\ parent wgEncodeUwHistoneViewRawSig off\ shortLabel WI38 In Sg 1\ subGroups view=zRSig factor=zInput cellType=t3WI38 rep=rep1 treatment=zNone\ track wgEncodeUwHistoneWi38InputStdRawRep1\ type bigWig 1.000000 13078.000000\ wgEncodeHaibTfbsA549Tead4sc101184V0422111RawRep1 A549 TEAD4 V11 1 bigWig 1.000000 3682.000000 A549 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 646 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 TEAD4 V11 1\ subGroups view=RawSignal factor=TEAD4SC101184 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsA549Tead4sc101184V0422111RawRep1\ type bigWig 1.000000 3682.000000\ wgEncodeSydhTfbsGm10847Pol2IggmusPk GM47 Pol2 IgM narrowPeak GM10847 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 646 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM10847 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM47 Pol2 IgM\ subGroups view=Peaks factor=POL2 cellType=t3GM10847 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm10847Pol2IggmusPk\ type narrowPeak\ encTfChipPkENCFF877ANE K562 MYBL2 narrowPeak Transcription Factor ChIP-seq Peaks of MYBL2 in K562 from ENCODE 3 (ENCFF877ANE) 1 646 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MYBL2 in K562 from ENCODE 3 (ENCFF877ANE)\ parent encTfChipPk off\ shortLabel K562 MYBL2\ subGroups cellType=K562 factor=MYBL2\ track encTfChipPkENCFF877ANE\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_ctss_rev Mcf7ToEgf1_04hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_reverse 0 646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep1.CNhs12430.13042-139F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13042-139F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_tpm_rev Mcf7ToEgf1_04hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_reverse 1 646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep1.CNhs12430.13042-139F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13042-139F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCellPapJunctions NHEK cel pA+ J bed 6 + NHEK whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 646 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel NHEK cel pA+ J\ subGroups view=Junctions cellType=t3NHEK localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqNhekCellPapJunctions\ type bed 6 +\ wgEncodeAwgTfbsUwNhlfCtcfUniPk NHLF CTCF w narrowPeak NHLF TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 646 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHLF TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NHLF CTCF w\ subGroups tier=a30 cellType=NHLF factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwNhlfCtcfUniPk\ wgEncodeHaibTfbsA549Tead4sc101184V0422111PkRep2 A549 TEAD4 V11 2 broadPeak A549 TEAD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 647 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 TEAD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 TEAD4 V11 2\ subGroups view=Peaks factor=TEAD4SC101184 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsA549Tead4sc101184V0422111PkRep2\ type broadPeak\ wgEncodeSydhTfbsGm10847Pol2IggmusSig GM47 Pol2 IgM bigWig 0.000000 11453.200195 GM10847 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 647 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM10847 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM47 Pol2 IgM\ subGroups view=Signal factor=POL2 cellType=t3GM10847 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm10847Pol2IggmusSig\ type bigWig 0.000000 11453.200195\ encTfChipPkENCFF099SDW K562 MYC 1 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF099SDW) 1 647 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF099SDW)\ parent encTfChipPk on\ shortLabel K562 MYC 1\ subGroups cellType=K562 factor=MYC\ track encTfChipPkENCFF099SDW\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_ctss_fwd Mcf7ToEgf1_04hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_forward 0 647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep2.CNhs12487.13108-140E3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13108-140E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_tpm_fwd Mcf7ToEgf1_04hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_forward 1 647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep2.CNhs12487.13108-140E3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13108-140E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCellPapMinusRawSigRep1 NHEK cel pA+ - 1 bigWig 1.000000 615785.000000 NHEK whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 647 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHEK cel pA+ - 1\ subGroups view=MinusSignal cellType=t3NHEK localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekCellPapMinusRawSigRep1\ type bigWig 1.000000 615785.000000\ wgEncodeAwgTfbsBroadNhlfEzh239875UniPk NHLF EZH2 narrowPeak NHLF TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis 1 647 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NHLF TFBS Uniform Peaks of EZH2_(39875) from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NHLF EZH2\ subGroups tier=a30 cellType=NHLF factor=EZH2 lab=Broad\ track wgEncodeAwgTfbsBroadNhlfEzh239875UniPk\ wgEncodeHaibTfbsA549Tead4sc101184V0422111RawRep2 A549 TEAD4 V11 2 bigWig 1.000000 2066.000000 A549 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 648 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 TEAD4 V11 2\ subGroups view=RawSignal factor=TEAD4SC101184 cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsA549Tead4sc101184V0422111RawRep2\ type bigWig 1.000000 2066.000000\ wgEncodeSydhTfbsGm10847InputIggmusSig GM47 Inpt IgM bigWig 0.000000 9122.299805 GM10847 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 648 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM10847 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM47 Inpt IgM\ subGroups view=Signal factor=ZZZINPUTIGGmus cellType=t3GM10847 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm10847InputIggmusSig\ type bigWig 0.000000 9122.299805\ encTfChipPkENCFF465JKF K562 MYC 2 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF465JKF) 1 648 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF465JKF)\ parent encTfChipPk off\ shortLabel K562 MYC 2\ subGroups cellType=K562 factor=MYC\ track encTfChipPkENCFF465JKF\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_ctss_rev Mcf7ToEgf1_04hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_reverse 0 648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep2.CNhs12487.13108-140E3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13108-140E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_tpm_rev Mcf7ToEgf1_04hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_reverse 1 648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep2.CNhs12487.13108-140E3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13108-140E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCellPapMinusRawSigRep2 NHEK cel pA+ - 2 bigWig 1.000000 753030.000000 NHEK whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 648 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHEK cel pA+ - 2\ subGroups view=MinusSignal cellType=t3NHEK localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhekCellPapMinusRawSigRep2\ type bigWig 1.000000 753030.000000\ wgEncodeAwgTfbsSydhNt2d1Suz12UcdUniPk NT2-D1 SUZ12 narrowPeak NT2-D1 TFBS Uniform Peaks of SUZ12 from ENCODE/USC/Analysis 1 648 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2-D1 TFBS Uniform Peaks of SUZ12 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NT2-D1 SUZ12\ subGroups tier=a30 cellType=NT2D1 factor=SUZ12 lab=USC\ track wgEncodeAwgTfbsSydhNt2d1Suz12UcdUniPk\ wgEncodeHaibTfbsA549Usf1Pcr1xDex100nmPkRep1 A549 USF1 DEX 1 broadPeak A549 USF-1 DEX 100nM PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 649 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 USF-1 DEX 100nM PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 USF1 DEX 1\ subGroups view=Peaks factor=USF1 cellType=t2A549 protocol=PCR1X treatment=DEX100NM rep=rep1\ track wgEncodeHaibTfbsA549Usf1Pcr1xDex100nmPkRep1\ type broadPeak\ wgEncodeSydhTfbsGm10847InputTnfaIggrabSig GM47 TNF Inpt IgR bigWig 0.000000 8241.500000 GM10847 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 649 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM10847 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM47 TNF Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t3GM10847 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm10847InputTnfaIggrabSig\ type bigWig 0.000000 8241.500000\ encTfChipPkENCFF676YJE K562 MYC 3 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF676YJE) 1 649 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF676YJE)\ parent encTfChipPk off\ shortLabel K562 MYC 3\ subGroups cellType=K562 factor=MYC\ track encTfChipPkENCFF676YJE\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_ctss_fwd Mcf7ToEgf1_04hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_forward 0 649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep3.CNhs12749.13174-141C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13174-141C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_tpm_fwd Mcf7ToEgf1_04hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_forward 1 649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep3.CNhs12749.13174-141C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13174-141C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCellPapPlusRawSigRep1 NHEK cel pA+ + 1 bigWig 1.000000 3604528.000000 NHEK whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 649 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHEK cel pA+ + 1\ subGroups view=PlusSignal cellType=t3NHEK localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekCellPapPlusRawSigRep1\ type bigWig 1.000000 3604528.000000\ wgEncodeAwgTfbsSydhNt2d1Yy1UcdUniPk NT2-D1 YY1 narrowPeak NT2-D1 TFBS Uniform Peaks of YY1 from ENCODE/USC/Analysis 1 649 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2-D1 TFBS Uniform Peaks of YY1 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NT2-D1 YY1\ subGroups tier=a30 cellType=NT2D1 factor=YY1 lab=USC\ track wgEncodeAwgTfbsSydhNt2d1Yy1UcdUniPk\ wgEncodeHaibTfbsA549Usf1Pcr1xDex100nmRawRep1 A549 USF1 DEX 1 bigWig 0.145761 139.164993 A549 USF-1 DEX 100nM PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 650 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 USF-1 DEX 100nM PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 USF1 DEX 1\ subGroups view=RawSignal factor=USF1 cellType=t2A549 protocol=PCR1X treatment=DEX100NM rep=rep1\ track wgEncodeHaibTfbsA549Usf1Pcr1xDex100nmRawRep1\ type bigWig 0.145761 139.164993\ wgEncodeSydhTfbsGm12891NfkbTnfaIggrabPk GM91 TNF NKB IgR narrowPeak GM12891 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH 3 650 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM91 TNF NKB IgR\ subGroups view=Peaks factor=NFKB cellType=t3GM12891 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm12891NfkbTnfaIggrabPk\ type narrowPeak\ encTfChipPkENCFF387LTN K562 MYC 4 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF387LTN) 1 650 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF387LTN)\ parent encTfChipPk off\ shortLabel K562 MYC 4\ subGroups cellType=K562 factor=MYC\ track encTfChipPkENCFF387LTN\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_ctss_rev Mcf7ToEgf1_04hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_reverse 0 650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep3.CNhs12749.13174-141C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13174-141C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_tpm_rev Mcf7ToEgf1_04hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_reverse 1 650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep3.CNhs12749.13174-141C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13174-141C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCellPapPlusRawSigRep2 NHEK cel pA+ + 2 bigWig 1.000000 2623600.000000 NHEK whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 650 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHEK cel pA+ + 2\ subGroups view=PlusSignal cellType=t3NHEK localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhekCellPapPlusRawSigRep2\ type bigWig 1.000000 2623600.000000\ wgEncodeAwgTfbsSydhNt2d1Znf274UcdUniPk NT2-D1 ZNF274 narrowPeak NT2-D1 TFBS Uniform Peaks of ZNF274 from ENCODE/USC/Analysis 1 650 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2-D1 TFBS Uniform Peaks of ZNF274 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel NT2-D1 ZNF274\ subGroups tier=a30 cellType=NT2D1 factor=ZNF274 lab=USC\ track wgEncodeAwgTfbsSydhNt2d1Znf274UcdUniPk\ wgEncodeHaibTfbsA549Usf1Pcr1xDex100nmPkRep2 A549 USF1 DEX 2 broadPeak A549 USF-1 DEX 100nM PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 651 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 USF-1 DEX 100nM PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 USF1 DEX 2\ subGroups view=Peaks factor=USF1 cellType=t2A549 protocol=PCR1X treatment=DEX100NM rep=rep2\ track wgEncodeHaibTfbsA549Usf1Pcr1xDex100nmPkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12891NfkbTnfaIggrabSig GM91 TNF NKB IgR bigWig 0.000000 8055.799805 GM12891 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 651 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM91 TNF NKB IgR\ subGroups view=Signal factor=NFKB cellType=t3GM12891 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm12891NfkbTnfaIggrabSig\ type bigWig 0.000000 8055.799805\ encTfChipPkENCFF634AYU K562 MYC 5 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF634AYU) 1 651 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF634AYU)\ parent encTfChipPk off\ shortLabel K562 MYC 5\ subGroups cellType=K562 factor=MYC\ track encTfChipPkENCFF634AYU\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_ctss_fwd Mcf7ToEgf1_05hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_forward 0 651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep1.CNhs12431.13043-139G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13043-139G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_tpm_fwd Mcf7ToEgf1_05hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_forward 1 651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep1.CNhs12431.13043-139G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13043-139G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCytosolLongnonpolyaAlnRep3 NHEK cyt pA- A 1 bam NHEK cytosol polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 651 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK cytosol polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHEK cyt pA- A 1\ subGroups view=Alignments cellType=t3NHEK localization=CYTOSOL rnaExtract=PAM rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekCytosolLongnonpolyaAlnRep3\ type bam\ wgEncodeAwgTfbsBroadOsteoblCtcfUniPk Osteobl CTCF narrowPeak Osteobl TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis 1 651 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Osteobl TFBS Uniform Peaks of CTCF from ENCODE/Broad/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel Osteobl CTCF\ subGroups tier=a30 cellType=OSTEOBL factor=CTCF lab=Broad\ track wgEncodeAwgTfbsBroadOsteoblCtcfUniPk\ wgEncodeHaibTfbsA549Usf1Pcr1xDex100nmRawRep2 A549 USF1 DEX 2 bigWig 0.262763 148.395996 A549 USF-1 DEX 100nM PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 652 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 USF-1 DEX 100nM PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 USF1 DEX 2\ subGroups view=RawSignal factor=USF1 cellType=t2A549 protocol=PCR1X treatment=DEX100NM rep=rep2\ track wgEncodeHaibTfbsA549Usf1Pcr1xDex100nmRawRep2\ type bigWig 0.262763 148.395996\ wgEncodeSydhTfbsGm12891Pol2IggmusPk GM91 Pol2 IgM narrowPeak GM12891 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 652 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM91 Pol2 IgM\ subGroups view=Peaks factor=POL2 cellType=t3GM12891 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12891Pol2IggmusPk\ type narrowPeak\ encTfChipPkENCFF583DZD K562 MYNN narrowPeak Transcription Factor ChIP-seq Peaks of MYNN in K562 from ENCODE 3 (ENCFF583DZD) 1 652 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of MYNN in K562 from ENCODE 3 (ENCFF583DZD)\ parent encTfChipPk off\ shortLabel K562 MYNN\ subGroups cellType=K562 factor=MYNN\ track encTfChipPkENCFF583DZD\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_ctss_rev Mcf7ToEgf1_05hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_reverse 0 652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep1.CNhs12431.13043-139G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13043-139G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_tpm_rev Mcf7ToEgf1_05hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_reverse 1 652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep1.CNhs12431.13043-139G1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13043-139G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCytosolPamContigsV2 NHEK cyt pA- C bed 6 + NHEK cytosol polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 652 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK cytosol polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel NHEK cyt pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3NHEK localization=CYTOSOL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqNhekCytosolPamContigsV2\ type bed 6 +\ wgEncodeAwgTfbsHaibPanc1Pol24h8V0416101UniPk PANC-1 POLR2A narrowPeak PANC-1 TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis 1 652 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel PANC-1 POLR2A\ subGroups tier=a30 cellType=PANC1 factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibPanc1Pol24h8V0416101UniPk\ wgEncodeHaibTfbsA549Usf1Pcr1xEtoh02PkRep1 A549 USF1 Et P1 1 broadPeak A549 USF-1 EtOH PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 653 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 USF-1 EtOH PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 USF1 Et P1 1\ subGroups view=Peaks factor=USF1 cellType=t2A549 protocol=PCR1X treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Usf1Pcr1xEtoh02PkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12891Pol2IggmusSig GM91 Pol2 IgM bigWig 0.000000 12778.000000 GM12891 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 653 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM91 Pol2 IgM\ subGroups view=Signal factor=POL2 cellType=t3GM12891 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12891Pol2IggmusSig\ type bigWig 0.000000 12778.000000\ encTfChipPkENCFF074EZL K562 NBN narrowPeak Transcription Factor ChIP-seq Peaks of NBN in K562 from ENCODE 3 (ENCFF074EZL) 1 653 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NBN in K562 from ENCODE 3 (ENCFF074EZL)\ parent encTfChipPk off\ shortLabel K562 NBN\ subGroups cellType=K562 factor=NBN\ track encTfChipPkENCFF074EZL\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_ctss_fwd Mcf7ToEgf1_05hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_forward 0 653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep2.CNhs12488.13109-140E4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13109-140E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_tpm_fwd Mcf7ToEgf1_05hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_forward 1 653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep2.CNhs12488.13109-140E4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13109-140E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCytosolPamJunctions NHEK cyt pA- J bed 6 + NHEK cytosol polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 653 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK cytosol polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel NHEK cyt pA- J\ subGroups view=Junctions cellType=t3NHEK localization=CYTOSOL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqNhekCytosolPamJunctions\ type bed 6 +\ wgEncodeAwgTfbsHaibPanc1NrsfPcr2xUniPk PANC-1 REST narrowPeak PANC-1 TFBS Uniform Peaks of NRSF from ENCODE/HudsonAlpha/Analysis 1 653 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 TFBS Uniform Peaks of NRSF from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel PANC-1 REST\ subGroups tier=a30 cellType=PANC1 factor=REST lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibPanc1NrsfPcr2xUniPk\ wgEncodeHaibTfbsA549Usf1Pcr1xEtoh02RawRep1 A549 USF1 Et P1 1 bigWig 0.197805 168.826996 A549 USF-1 EtOH PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 654 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 USF-1 EtOH PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 USF1 Et P1 1\ subGroups view=RawSignal factor=USF1 cellType=t2A549 protocol=PCR1X treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Usf1Pcr1xEtoh02RawRep1\ type bigWig 0.197805 168.826996\ wgEncodeSydhTfbsGm12891InputIggmusSig GM91 Inpt IgM bigWig 0.000000 10997.200195 GM12891 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 654 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM91 Inpt IgM\ subGroups view=Signal factor=ZZZINPUTIGGmus cellType=t3GM12891 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12891InputIggmusSig\ type bigWig 0.000000 10997.200195\ encTfChipPkENCFF297JZQ K562 NCOA1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF297JZQ) 1 654 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF297JZQ)\ parent encTfChipPk off\ shortLabel K562 NCOA1 1\ subGroups cellType=K562 factor=NCOA1\ track encTfChipPkENCFF297JZQ\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_ctss_rev Mcf7ToEgf1_05hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_reverse 0 654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep2.CNhs12488.13109-140E4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13109-140E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_tpm_rev Mcf7ToEgf1_05hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_reverse 1 654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep2.CNhs12488.13109-140E4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13109-140E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCytosolLongnonpolyaMinusRawSigRep3 NHEK cyt pA- - 1 bigWig 1.000000 3188309.000000 NHEK cytosol polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 654 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK cytosol polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHEK cyt pA- - 1\ subGroups view=MinusSignal cellType=t3NHEK localization=CYTOSOL rnaExtract=PAM rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekCytosolLongnonpolyaMinusRawSigRep3\ type bigWig 1.000000 3188309.000000\ wgEncodeAwgTfbsHaibPanc1Sin3ak20V0416101UniPk PANC-1 SIN3AK20 narrowPeak PANC-1 TFBS Uniform Peaks of Sin3Ak-20 from ENCODE/HudsonAlpha/Analysis 1 654 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 TFBS Uniform Peaks of Sin3Ak-20 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel PANC-1 SIN3AK20\ subGroups tier=a30 cellType=PANC1 factor=SIN3AK20 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibPanc1Sin3ak20V0416101UniPk\ wgEncodeHaibTfbsA549Usf1Pcr1xEtoh02PkRep2 A549 USF1 Et P1 2 broadPeak A549 USF-1 EtOH PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 655 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 USF-1 EtOH PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 USF1 Et P1 2\ subGroups view=Peaks factor=USF1 cellType=t2A549 protocol=PCR1X treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Usf1Pcr1xEtoh02PkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12891InputTnfaIggrabSig GM91 TNF Inpt IgR bigWig 0.000000 12307.200195 GM12891 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 655 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM91 TNF Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t3GM12891 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm12891InputTnfaIggrabSig\ type bigWig 0.000000 12307.200195\ encTfChipPkENCFF967IKR K562 NCOA1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF967IKR) 1 655 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF967IKR)\ parent encTfChipPk off\ shortLabel K562 NCOA1 2\ subGroups cellType=K562 factor=NCOA1\ track encTfChipPkENCFF967IKR\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_ctss_fwd Mcf7ToEgf1_05hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_forward 0 655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep3.CNhs12750.13175-141C7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13175-141C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_tpm_fwd Mcf7ToEgf1_05hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_forward 1 655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep3.CNhs12750.13175-141C7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13175-141C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCytosolLongnonpolyaPlusRawSigRep3 NHEK cyt pA- + 1 bigWig 1.000000 10528045.000000 NHEK cytosol polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 655 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK cytosol polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHEK cyt pA- + 1\ subGroups view=PlusSignal cellType=t3NHEK localization=CYTOSOL rnaExtract=PAM rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekCytosolLongnonpolyaPlusRawSigRep3\ type bigWig 1.000000 10528045.000000\ wgEncodeAwgTfbsSydhPanc1Tcf7l2UcdUniPk PANC-1 TCF7L2 narrowPeak PANC-1 TFBS Uniform Peaks of TCF7L2 from ENCODE/USC/Analysis 1 655 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 TFBS Uniform Peaks of TCF7L2 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel PANC-1 TCF7L2\ subGroups tier=a30 cellType=PANC1 factor=TCF7L2 lab=USC\ track wgEncodeAwgTfbsSydhPanc1Tcf7l2UcdUniPk\ wgEncodeHaibTfbsA549Usf1Pcr1xEtoh02RawRep2 A549 USF1 Et P1 2 bigWig 0.244092 176.904999 A549 USF-1 EtOH PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 656 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 USF-1 EtOH PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 USF1 Et P1 2\ subGroups view=RawSignal factor=USF1 cellType=t2A549 protocol=PCR1X treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Usf1Pcr1xEtoh02RawRep2\ type bigWig 0.244092 176.904999\ wgEncodeSydhTfbsGm12892NfkbTnfaIggrabPk GM92 TNF NKB IgR narrowPeak GM12892 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH 3 656 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM92 TNF NKB IgR\ subGroups view=Peaks factor=NFKB cellType=t3GM12892 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm12892NfkbTnfaIggrabPk\ type narrowPeak\ encTfChipPkENCFF701NVT K562 NCOA1 3 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF701NVT) 1 656 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF701NVT)\ parent encTfChipPk off\ shortLabel K562 NCOA1 3\ subGroups cellType=K562 factor=NCOA1\ track encTfChipPkENCFF701NVT\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_ctss_rev Mcf7ToEgf1_05hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_reverse 0 656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep3.CNhs12750.13175-141C7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13175-141C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_tpm_rev Mcf7ToEgf1_05hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_reverse 1 656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep3.CNhs12750.13175-141C7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13175-141C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCytosolPapAlnRep3 NHEK cyt pA+ A 1 bam NHEK cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 656 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK cytosol polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHEK cyt pA+ A 1\ subGroups view=Alignments cellType=t3NHEK localization=CYTOSOL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekCytosolPapAlnRep3\ type bam\ wgEncodeAwgTfbsSydhPbdeGata1UcdUniPk PBDE GATA1 narrowPeak PBDE TFBS Uniform Peaks of GATA-1 from ENCODE/USC/Analysis 1 656 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PBDE TFBS Uniform Peaks of GATA-1 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel PBDE GATA1\ subGroups tier=a30 cellType=PBDE factor=GATA1 lab=USC\ track wgEncodeAwgTfbsSydhPbdeGata1UcdUniPk\ wgEncodeHaibTfbsA549Usf1V0422111Etoh02PkRep1 A549 USF Et V11 1 broadPeak A549 USF-1 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 657 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 USF-1 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 USF Et V11 1\ subGroups view=Peaks factor=USF1 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Usf1V0422111Etoh02PkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12892NfkbTnfaIggrabSig GM92 TNF NKB IgR bigWig 0.000000 10030.599609 GM12892 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 657 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12892 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM92 TNF NKB IgR\ subGroups view=Signal factor=NFKB cellType=t3GM12892 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm12892NfkbTnfaIggrabSig\ type bigWig 0.000000 10030.599609\ encTfChipPkENCFF914RFS K562 NCOA2 1 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA2 in K562 from ENCODE 3 (ENCFF914RFS) 1 657 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NCOA2 in K562 from ENCODE 3 (ENCFF914RFS)\ parent encTfChipPk off\ shortLabel K562 NCOA2 1\ subGroups cellType=K562 factor=NCOA2\ track encTfChipPkENCFF914RFS\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_ctss_fwd Mcf7ToEgf1_06hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_forward 0 657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep1.CNhs12432.13044-139G2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13044-139G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_tpm_fwd Mcf7ToEgf1_06hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_forward 1 657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep1.CNhs12432.13044-139G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13044-139G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCytosolPapAlnRep4 NHEK cyt pA+ A 2 bam NHEK cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 657 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK cytosol polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHEK cyt pA+ A 2\ subGroups view=Alignments cellType=t3NHEK localization=CYTOSOL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqNhekCytosolPapAlnRep4\ type bam\ wgEncodeAwgTfbsSydhPbdePol2UcdUniPk PBDE POLR2A narrowPeak PBDE TFBS Uniform Peaks of Pol2 from ENCODE/USC/Analysis 1 657 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PBDE TFBS Uniform Peaks of Pol2 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel PBDE POLR2A\ subGroups tier=a30 cellType=PBDE factor=POLR2A lab=USC\ track wgEncodeAwgTfbsSydhPbdePol2UcdUniPk\ wgEncodeHaibTfbsA549Usf1V0422111Etoh02RawRep1 A549 USF Et V11 1 bigWig 0.136294 197.591995 A549 USF-1 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 658 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 USF-1 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 USF Et V11 1\ subGroups view=RawSignal factor=USF1 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Usf1V0422111Etoh02RawRep1\ type bigWig 0.136294 197.591995\ wgEncodeSydhTfbsGm12892Pol2IggmusPk GM92 Pol2 IgM narrowPeak GM12892 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 658 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM92 Pol2 IgM\ subGroups view=Peaks factor=POL2 cellType=t3GM12892 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12892Pol2IggmusPk\ type narrowPeak\ encTfChipPkENCFF922TDM K562 NCOA2 2 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA2 in K562 from ENCODE 3 (ENCFF922TDM) 1 658 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NCOA2 in K562 from ENCODE 3 (ENCFF922TDM)\ parent encTfChipPk off\ shortLabel K562 NCOA2 2\ subGroups cellType=K562 factor=NCOA2\ track encTfChipPkENCFF922TDM\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_ctss_rev Mcf7ToEgf1_06hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_reverse 0 658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep1.CNhs12432.13044-139G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13044-139G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_tpm_rev Mcf7ToEgf1_06hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_reverse 1 658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep1.CNhs12432.13044-139G2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13044-139G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCytosolPapContigs NHEK cyt pA+ C bed 6 + NHEK cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 658 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK cytosol polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel NHEK cyt pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3NHEK localization=CYTOSOL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqNhekCytosolPapContigs\ type bed 6 +\ wgEncodeAwgTfbsSydhPbdefetalGata1UcdUniPk PBDEFetal GATA1 narrowPeak PBDEFetal TFBS Uniform Peaks of GATA-1 from ENCODE/USC/Analysis 1 658 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PBDEFetal TFBS Uniform Peaks of GATA-1 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel PBDEFetal GATA1\ subGroups tier=a30 cellType=PBDEFETAL factor=GATA1 lab=USC\ track wgEncodeAwgTfbsSydhPbdefetalGata1UcdUniPk\ wgEncodeHaibTfbsA549Usf1V0422111Etoh02PkRep2 A549 USF Et V11 2 broadPeak A549 USF-1 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 659 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 USF-1 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 USF Et V11 2\ subGroups view=Peaks factor=USF1 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Usf1V0422111Etoh02PkRep2\ type broadPeak\ wgEncodeSydhTfbsGm12892Pol2IggmusSig GM92 Pol2 IgM bigWig 0.000000 15824.400391 GM12892 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 659 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12892 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM92 Pol2 IgM\ subGroups view=Signal factor=POL2 cellType=t3GM12892 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12892Pol2IggmusSig\ type bigWig 0.000000 15824.400391\ encTfChipPkENCFF495CSO K562 NCOA4 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA4 in K562 from ENCODE 3 (ENCFF495CSO) 1 659 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NCOA4 in K562 from ENCODE 3 (ENCFF495CSO)\ parent encTfChipPk off\ shortLabel K562 NCOA4\ subGroups cellType=K562 factor=NCOA4\ track encTfChipPkENCFF495CSO\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_ctss_fwd Mcf7ToEgf1_06hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_forward 0 659 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep2.CNhs12489.13110-140E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13110-140E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_tpm_fwd Mcf7ToEgf1_06hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_forward 1 659 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep2.CNhs12489.13110-140E5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13110-140E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCytosolPapJunctions NHEK cyt pA+ J bed 6 + NHEK cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 659 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK cytosol polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel NHEK cyt pA+ J\ subGroups view=Junctions cellType=t3NHEK localization=CYTOSOL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqNhekCytosolPapJunctions\ type bed 6 +\ wgEncodeAwgTfbsHaibPfsk1Foxp2Pcr2xUniPk PFSK-1 FOXP2 narrowPeak PFSK-1 TFBS Uniform Peaks of FOXP2 from ENCODE/HudsonAlpha/Analysis 1 659 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PFSK-1 TFBS Uniform Peaks of FOXP2 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel PFSK-1 FOXP2\ subGroups tier=a30 cellType=PFSK1 factor=FOXP2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibPfsk1Foxp2Pcr2xUniPk\ wgEncodeHaibTfbsA549Usf1V0422111Etoh02RawRep2 A549 USF Et V11 2 bigWig 0.141281 217.643005 A549 USF-1 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 660 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 USF-1 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 USF Et V11 2\ subGroups view=RawSignal factor=USF1 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Usf1V0422111Etoh02RawRep2\ type bigWig 0.141281 217.643005\ wgEncodeSydhTfbsGm12892InputIggmusSig GM92 Inpt IgM bigWig 0.000000 6636.100098 GM12892 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 660 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12892 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM92 Inpt IgM\ subGroups view=Signal factor=ZZZINPUTIGGmus cellType=t3GM12892 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm12892InputIggmusSig\ type bigWig 0.000000 6636.100098\ encTfChipPkENCFF322DSX K562 NCOA6 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA6 in K562 from ENCODE 3 (ENCFF322DSX) 1 660 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NCOA6 in K562 from ENCODE 3 (ENCFF322DSX)\ parent encTfChipPk off\ shortLabel K562 NCOA6\ subGroups cellType=K562 factor=NCOA6\ track encTfChipPkENCFF322DSX\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_ctss_rev Mcf7ToEgf1_06hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_reverse 0 660 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep2.CNhs12489.13110-140E5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13110-140E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_tpm_rev Mcf7ToEgf1_06hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_reverse 1 660 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep2.CNhs12489.13110-140E5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13110-140E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCytosolPapMinusRawSigRep3 NHEK cyt pA+ - 1 bigWig 1.000000 868073.000000 NHEK cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 660 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK cytosol polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHEK cyt pA+ - 1\ subGroups view=MinusSignal cellType=t3NHEK localization=CYTOSOL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekCytosolPapMinusRawSigRep3\ type bigWig 1.000000 868073.000000\ wgEncodeAwgTfbsHaibPfsk1NrsfPcr2xUniPk PFSK-1 REST narrowPeak PFSK-1 TFBS Uniform Peaks of NRSF from ENCODE/HudsonAlpha/Analysis 1 660 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PFSK-1 TFBS Uniform Peaks of NRSF from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel PFSK-1 REST\ subGroups tier=a30 cellType=PFSK1 factor=REST lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibPfsk1NrsfPcr2xUniPk\ wgEncodeHaibTfbsA549Yy1cV0422111Etoh02PkRep1 A549 YY1 EtOH 1 broadPeak A549 YY1 281 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 661 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 YY1 281 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 YY1 EtOH 1\ subGroups view=Peaks factor=YY1SC281 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Yy1cV0422111Etoh02PkRep1\ type broadPeak\ wgEncodeSydhTfbsGm12892InputTnfaIggrabSig GM92 TNF Inpt IgR bigWig 0.000000 10143.200195 GM12892 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 661 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12892 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM92 TNF Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t3GM12892 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm12892InputTnfaIggrabSig\ type bigWig 0.000000 10143.200195\ encTfChipPkENCFF165BCW K562 NCOR1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF165BCW) 1 661 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF165BCW)\ parent encTfChipPk off\ shortLabel K562 NCOR1 1\ subGroups cellType=K562 factor=NCOR1\ track encTfChipPkENCFF165BCW\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_ctss_fwd Mcf7ToEgf1_06hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_forward 0 661 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep3.CNhs12751.13176-141C8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13176-141C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_tpm_fwd Mcf7ToEgf1_06hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_forward 1 661 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep3.CNhs12751.13176-141C8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13176-141C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCytosolPapMinusRawSigRep4 NHEK cyt pA+ - 2 bigWig 1.000000 777654.000000 NHEK cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 661 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK cytosol polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHEK cyt pA+ - 2\ subGroups view=MinusSignal cellType=t3NHEK localization=CYTOSOL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqNhekCytosolPapMinusRawSigRep4\ type bigWig 1.000000 777654.000000\ wgEncodeAwgTfbsHaibPfsk1Sin3ak20V0416101UniPk PFSK-1 SIN3AK20 narrowPeak PFSK-1 TFBS Uniform Peaks of Sin3Ak-20 from ENCODE/HudsonAlpha/Analysis 1 661 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PFSK-1 TFBS Uniform Peaks of Sin3Ak-20 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel PFSK-1 SIN3AK20\ subGroups tier=a30 cellType=PFSK1 factor=SIN3AK20 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibPfsk1Sin3ak20V0416101UniPk\ wgEncodeHaibTfbsA549Yy1cV0422111Etoh02RawRep1 A549 YY1 EtOH 1 bigWig 0.101128 202.052994 A549 YY1 281 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 662 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 YY1 281 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 YY1 EtOH 1\ subGroups view=RawSignal factor=YY1SC281 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Yy1cV0422111Etoh02RawRep1\ type bigWig 0.101128 202.052994\ wgEncodeSydhTfbsGm15510NfkbTnfaIggrabPk GM10 TNF NKB IgR narrowPeak GM15510 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH 3 662 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM15510 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM10 TNF NKB IgR\ subGroups view=Peaks factor=NFKB cellType=t3GM15510 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm15510NfkbTnfaIggrabPk\ type narrowPeak\ encTfChipPkENCFF080NBZ K562 NCOR1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF080NBZ) 1 662 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF080NBZ)\ parent encTfChipPk off\ shortLabel K562 NCOR1 2\ subGroups cellType=K562 factor=NCOR1\ track encTfChipPkENCFF080NBZ\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_ctss_rev Mcf7ToEgf1_06hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_reverse 0 662 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep3.CNhs12751.13176-141C8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13176-141C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_tpm_rev Mcf7ToEgf1_06hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_reverse 1 662 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep3.CNhs12751.13176-141C8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13176-141C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCytosolPapPlusRawSigRep3 NHEK cyt pA+ + 1 bigWig 1.000000 429216.000000 NHEK cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 662 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK cytosol polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHEK cyt pA+ + 1\ subGroups view=PlusSignal cellType=t3NHEK localization=CYTOSOL rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekCytosolPapPlusRawSigRep3\ type bigWig 1.000000 429216.000000\ wgEncodeAwgTfbsHaibPfsk1Taf1V0416101UniPk PFSK-1 TAF1 narrowPeak PFSK-1 TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis 1 662 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PFSK-1 TFBS Uniform Peaks of TAF1 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel PFSK-1 TAF1\ subGroups tier=a30 cellType=PFSK1 factor=TAF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibPfsk1Taf1V0416101UniPk\ wgEncodeHaibTfbsA549Yy1cV0422111Etoh02PkRep2 A549 YY1 EtOH 2 broadPeak A549 YY1 281 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 663 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 YY1 281 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 YY1 EtOH 2\ subGroups view=Peaks factor=YY1SC281 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Yy1cV0422111Etoh02PkRep2\ type broadPeak\ wgEncodeSydhTfbsGm15510NfkbTnfaIggrabSig GM10 TNF NKB IgR bigWig 0.000000 11463.500000 GM15510 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 663 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM15510 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM10 TNF NKB IgR\ subGroups view=Signal factor=NFKB cellType=t3GM15510 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm15510NfkbTnfaIggrabSig\ type bigWig 0.000000 11463.500000\ encTfChipPkENCFF366UBB K562 NCOR1 3 narrowPeak Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF366UBB) 1 663 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF366UBB)\ parent encTfChipPk off\ shortLabel K562 NCOR1 3\ subGroups cellType=K562 factor=NCOR1\ track encTfChipPkENCFF366UBB\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_ctss_fwd Mcf7ToEgf1_07hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_forward 0 663 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep1.CNhs12434.13045-139G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13045-139G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_tpm_fwd Mcf7ToEgf1_07hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_forward 1 663 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep1.CNhs12434.13045-139G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13045-139G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekCytosolPapPlusRawSigRep4 NHEK cyt pA+ + 2 bigWig 1.000000 693609.000000 NHEK cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 663 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK cytosol polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHEK cyt pA+ + 2\ subGroups view=PlusSignal cellType=t3NHEK localization=CYTOSOL rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqNhekCytosolPapPlusRawSigRep4\ type bigWig 1.000000 693609.000000\ wgEncodeAwgTfbsUtaProgfibCtcfUniPk ProgFib CTCF narrowPeak ProgFib TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis 1 663 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ProgFib TFBS Uniform Peaks of CTCF from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel ProgFib CTCF\ subGroups tier=a30 cellType=PROGFIB factor=CTCF lab=UT-A\ track wgEncodeAwgTfbsUtaProgfibCtcfUniPk\ wgEncodeHaibTfbsA549Yy1cV0422111Etoh02RawRep2 A549 YY1 EtOH 2 bigWig 0.133849 631.599976 A549 YY1 281 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 664 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 YY1 281 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 YY1 EtOH 2\ subGroups view=RawSignal factor=YY1SC281 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Yy1cV0422111Etoh02RawRep2\ type bigWig 0.133849 631.599976\ wgEncodeSydhTfbsGm15510Pol2IggmusPk GM10 Pol2 IgM narrowPeak GM15510 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 664 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM15510 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM10 Pol2 IgM\ subGroups view=Peaks factor=POL2 cellType=t3GM15510 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm15510Pol2IggmusPk\ type narrowPeak\ encTfChipPkENCFF581YKY K562 NEUROD1 narrowPeak Transcription Factor ChIP-seq Peaks of NEUROD1 in K562 from ENCODE 3 (ENCFF581YKY) 1 664 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NEUROD1 in K562 from ENCODE 3 (ENCFF581YKY)\ parent encTfChipPk off\ shortLabel K562 NEUROD1\ subGroups cellType=K562 factor=NEUROD1\ track encTfChipPkENCFF581YKY\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_ctss_rev Mcf7ToEgf1_07hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_reverse 0 664 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep1.CNhs12434.13045-139G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13045-139G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_tpm_rev Mcf7ToEgf1_07hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_reverse 1 664 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep1.CNhs12434.13045-139G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13045-139G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekNucleusLongnonpolyaAlnRep3 NHEK nuc pA- A 1 bam NHEK nucleus polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 664 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK nucleus polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHEK nuc pA- A 1\ subGroups view=Alignments cellType=t3NHEK localization=NUCLEUS rnaExtract=PAM rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekNucleusLongnonpolyaAlnRep3\ type bam\ wgEncodeAwgTfbsUtaProgfibPol2UniPk ProgFib POLR2A narrowPeak ProgFib TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis 1 664 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ProgFib TFBS Uniform Peaks of Pol2 from ENCODE/UT-A/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel ProgFib POLR2A\ subGroups tier=a30 cellType=PROGFIB factor=POLR2A lab=UT-A\ track wgEncodeAwgTfbsUtaProgfibPol2UniPk\ wgEncodeHaibTfbsA549Zbtb33V0422111Etoh02PkRep1 A549 ZBTB33 ETH 1 broadPeak A549 ZBTB33 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 665 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 ZBTB33 EtOH v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 ZBTB33 ETH 1\ subGroups view=Peaks factor=ZBTB33 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Zbtb33V0422111Etoh02PkRep1\ type broadPeak\ wgEncodeSydhTfbsGm15510Pol2IggmusSig GM10 Pol2 IgM bigWig 0.000000 25978.199219 GM15510 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 665 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM15510 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM10 Pol2 IgM\ subGroups view=Signal factor=POL2 cellType=t3GM15510 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm15510Pol2IggmusSig\ type bigWig 0.000000 25978.199219\ encTfChipPkENCFF723RSX K562 NFATC3 1 narrowPeak Transcription Factor ChIP-seq Peaks of NFATC3 in K562 from ENCODE 3 (ENCFF723RSX) 1 665 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NFATC3 in K562 from ENCODE 3 (ENCFF723RSX)\ parent encTfChipPk off\ shortLabel K562 NFATC3 1\ subGroups cellType=K562 factor=NFATC3\ track encTfChipPkENCFF723RSX\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_ctss_fwd Mcf7ToEgf1_07hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_forward 0 665 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep2.CNhs12490.13111-140E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13111-140E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_tpm_fwd Mcf7ToEgf1_07hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_forward 1 665 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep2.CNhs12490.13111-140E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13111-140E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekNucleusLongnonpolyaAlnRep4 NHEK nuc pA- A 2 bam NHEK nucleus polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 665 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK nucleus polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHEK nuc pA- A 2\ subGroups view=Alignments cellType=t3NHEK localization=NUCLEUS rnaExtract=PAM rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqNhekNucleusLongnonpolyaAlnRep4\ type bam\ wgEncodeAwgTfbsSydhRajiPol2UcdUniPk Raji POLR2A narrowPeak Raji TFBS Uniform Peaks of Pol2 from ENCODE/USC/Analysis 1 665 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Raji TFBS Uniform Peaks of Pol2 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel Raji POLR2A\ subGroups tier=a30 cellType=RAJI factor=POLR2A lab=USC\ track wgEncodeAwgTfbsSydhRajiPol2UcdUniPk\ wgEncodeHaibTfbsA549Zbtb33V0422111Etoh02RawRep1 A549 ZBTB33 ETH 1 bigWig 0.139512 281.221008 A549 ZBTB33 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 666 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 ZBTB33 EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 ZBTB33 ETH 1\ subGroups view=RawSignal factor=ZBTB33 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549Zbtb33V0422111Etoh02RawRep1\ type bigWig 0.139512 281.221008\ wgEncodeSydhTfbsGm15510InputIggmusSig GM10 Inpt IgM bigWig 0.000000 10053.500000 GM15510 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 666 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM15510 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM10 Inpt IgM\ subGroups view=Signal factor=ZZZINPUTIGGmus cellType=t3GM15510 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm15510InputIggmusSig\ type bigWig 0.000000 10053.500000\ encTfChipPkENCFF184RRU K562 NFATC3 2 narrowPeak Transcription Factor ChIP-seq Peaks of NFATC3 in K562 from ENCODE 3 (ENCFF184RRU) 1 666 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NFATC3 in K562 from ENCODE 3 (ENCFF184RRU)\ parent encTfChipPk off\ shortLabel K562 NFATC3 2\ subGroups cellType=K562 factor=NFATC3\ track encTfChipPkENCFF184RRU\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_ctss_rev Mcf7ToEgf1_07hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_reverse 0 666 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep2.CNhs12490.13111-140E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13111-140E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_tpm_rev Mcf7ToEgf1_07hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_reverse 1 666 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep2.CNhs12490.13111-140E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13111-140E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekNucleusPamContigs NHEK nuc pA- C bed 6 + NHEK nucleus polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 666 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK nucleus polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel NHEK nuc pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3NHEK localization=NUCLEUS rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqNhekNucleusPamContigs\ type bed 6 +\ wgEncodeAwgTfbsUwRptecCtcfUniPk RPTEC CTCF narrowPeak RPTEC TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 666 0 0 0 127 127 127 0 0 0 regulation 1 longLabel RPTEC TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel RPTEC CTCF\ subGroups tier=a30 cellType=RPTEC factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwRptecCtcfUniPk\ wgEncodeHaibTfbsA549Zbtb33V0422111Etoh02PkRep2 A549 ZBTB33 ETH 2 broadPeak A549 ZBTB33 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 667 0 0 0 127 127 127 0 0 0 regulation 1 longLabel A549 ZBTB33 EtOH v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel A549 ZBTB33 ETH 2\ subGroups view=Peaks factor=ZBTB33 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Zbtb33V0422111Etoh02PkRep2\ type broadPeak\ wgEncodeSydhTfbsGm15510InputTnfaIggrabSig GM10 TNF Inpt IgR bigWig 0.000000 9380.400391 GM15510 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 667 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM15510 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM10 TNF Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t3GM15510 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm15510InputTnfaIggrabSig\ type bigWig 0.000000 9380.400391\ encTfChipPkENCFF495MHZ K562 NFE2 narrowPeak Transcription Factor ChIP-seq Peaks of NFE2 in K562 from ENCODE 3 (ENCFF495MHZ) 1 667 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NFE2 in K562 from ENCODE 3 (ENCFF495MHZ)\ parent encTfChipPk off\ shortLabel K562 NFE2\ subGroups cellType=K562 factor=NFE2\ track encTfChipPkENCFF495MHZ\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_ctss_fwd Mcf7ToEgf1_07hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_forward 0 667 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep3.CNhs12752.13177-141C9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13177-141C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_tpm_fwd Mcf7ToEgf1_07hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_forward 1 667 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep3.CNhs12752.13177-141C9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13177-141C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekNucleusPamJunctions NHEK nuc pA- J bed 6 + NHEK nucleus polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 667 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK nucleus polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel NHEK nuc pA- J\ subGroups view=Junctions cellType=t3NHEK localization=NUCLEUS rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqNhekNucleusPamJunctions\ type bed 6 +\ wgEncodeAwgTfbsUwSaecCtcfUniPk SAEC CTCF narrowPeak SAEC TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 667 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SAEC TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel SAEC CTCF\ subGroups tier=a30 cellType=SAEC factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwSaecCtcfUniPk\ wgEncodeHaibTfbsA549Zbtb33V0422111Etoh02RawRep2 A549 ZBTB33 ETH 2 bigWig 0.137460 193.164993 A549 ZBTB33 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 668 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 ZBTB33 EtOH v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 ZBTB33 ETH 2\ subGroups view=RawSignal factor=ZBTB33 cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsA549Zbtb33V0422111Etoh02RawRep2\ type bigWig 0.137460 193.164993\ wgEncodeSydhTfbsGm18505NfkbTnfaIggrabPk GM05 TNF NKB IgR narrowPeak GM18505 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH 3 668 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM18505 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM05 TNF NKB IgR\ subGroups view=Peaks factor=NFKB cellType=t3GM18505 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm18505NfkbTnfaIggrabPk\ type narrowPeak\ encTfChipPkENCFF370ENX K562 NFIC narrowPeak Transcription Factor ChIP-seq Peaks of NFIC in K562 from ENCODE 3 (ENCFF370ENX) 1 668 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NFIC in K562 from ENCODE 3 (ENCFF370ENX)\ parent encTfChipPk off\ shortLabel K562 NFIC\ subGroups cellType=K562 factor=NFIC\ track encTfChipPkENCFF370ENX\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_ctss_rev Mcf7ToEgf1_07hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_reverse 0 668 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep3.CNhs12752.13177-141C9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13177-141C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_tpm_rev Mcf7ToEgf1_07hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_reverse 1 668 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep3.CNhs12752.13177-141C9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13177-141C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekNucleusLongnonpolyaMinusRawSigRep3 NHEK nuc pA- - 1 bigWig 1.000000 6344022.000000 NHEK nucleus polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 668 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK nucleus polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHEK nuc pA- - 1\ subGroups view=MinusSignal cellType=t3NHEK localization=NUCLEUS rnaExtract=PAM rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekNucleusLongnonpolyaMinusRawSigRep3\ type bigWig 1.000000 6344022.000000\ wgEncodeAwgTfbsSydhShsy5yGata2UcdUniPk SH-SY5Y GATA2 narrowPeak SH-SY5Y TFBS Uniform Peaks of GATA-2 from ENCODE/USC/Analysis 1 668 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SH-SY5Y TFBS Uniform Peaks of GATA-2 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel SH-SY5Y GATA2\ subGroups tier=a30 cellType=SHSY5Y factor=GATA2 lab=USC\ track wgEncodeAwgTfbsSydhShsy5yGata2UcdUniPk\ wgEncodeHaibTfbsA549RxlchPcr1xDex100nmRawRep1 A549 RX DEX PC1 1 bigWig 0.216637 169.572006 A549 Control DEX 100nM PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 669 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Control DEX 100nM PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 RX DEX PC1 1\ subGroups view=RawSignal factor=zRXLCH cellType=t2A549 protocol=PCR1X treatment=DEX100NM rep=rep1\ track wgEncodeHaibTfbsA549RxlchPcr1xDex100nmRawRep1\ type bigWig 0.216637 169.572006\ wgEncodeSydhTfbsGm18505NfkbTnfaIggrabSig GM05 TNF NKB IgR bigWig 0.000000 9172.400391 GM18505 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 669 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM18505 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM05 TNF NKB IgR\ subGroups view=Signal factor=NFKB cellType=t3GM18505 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm18505NfkbTnfaIggrabSig\ type bigWig 0.000000 9172.400391\ encTfChipPkENCFF157UUF K562 NFRKB 1 narrowPeak Transcription Factor ChIP-seq Peaks of NFRKB in K562 from ENCODE 3 (ENCFF157UUF) 1 669 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NFRKB in K562 from ENCODE 3 (ENCFF157UUF)\ parent encTfChipPk off\ shortLabel K562 NFRKB 1\ subGroups cellType=K562 factor=NFRKB\ track encTfChipPkENCFF157UUF\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_ctss_fwd Mcf7ToEgf1_08hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_forward 0 669 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep2.CNhs12491.13112-140E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13112-140E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_tpm_fwd Mcf7ToEgf1_08hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_forward 1 669 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep2.CNhs12491.13112-140E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13112-140E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekNucleusLongnonpolyaMinusRawSigRep4 NHEK nuc pA- - 2 bigWig 1.000000 3083517.000000 NHEK nucleus polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 669 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK nucleus polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHEK nuc pA- - 2\ subGroups view=MinusSignal cellType=t3NHEK localization=NUCLEUS rnaExtract=PAM rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqNhekNucleusLongnonpolyaMinusRawSigRep4\ type bigWig 1.000000 3083517.000000\ wgEncodeAwgTfbsSydhShsy5yGata3sc269sc269UcdUniPk SH-SY5Y GATA3 narrowPeak SH-SY5Y TFBS Uniform Peaks of GATA3_(SC-269) from ENCODE/USC/Analysis 1 669 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SH-SY5Y TFBS Uniform Peaks of GATA3_(SC-269) from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel SH-SY5Y GATA3\ subGroups tier=a30 cellType=SHSY5Y factor=GATA3 lab=USC\ track wgEncodeAwgTfbsSydhShsy5yGata3sc269sc269UcdUniPk\ wgEncodeHaibTfbsA549RxlchPcr2xDex100nmRawRep1 A549 RX DEX PC2 1 bigWig 0.145188 133.645004 A549 Control DEX 100nM PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 670 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Control DEX 100nM PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 RX DEX PC2 1\ subGroups view=RawSignal factor=zRXLCH cellType=t2A549 protocol=PCR2X treatment=DEX100NM rep=rep1\ track wgEncodeHaibTfbsA549RxlchPcr2xDex100nmRawRep1\ type bigWig 0.145188 133.645004\ wgEncodeSydhTfbsGm18505Pol2IggmusPk GM05 Pol2 IgM narrowPeak GM18505 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 670 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM18505 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM05 Pol2 IgM\ subGroups view=Peaks factor=POL2 cellType=t3GM18505 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm18505Pol2IggmusPk\ type narrowPeak\ encTfChipPkENCFF677OWM K562 NFRKB 2 narrowPeak Transcription Factor ChIP-seq Peaks of NFRKB in K562 from ENCODE 3 (ENCFF677OWM) 1 670 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NFRKB in K562 from ENCODE 3 (ENCFF677OWM)\ parent encTfChipPk off\ shortLabel K562 NFRKB 2\ subGroups cellType=K562 factor=NFRKB\ track encTfChipPkENCFF677OWM\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_ctss_rev Mcf7ToEgf1_08hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_reverse 0 670 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep2.CNhs12491.13112-140E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13112-140E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_tpm_rev Mcf7ToEgf1_08hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_reverse 1 670 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep2.CNhs12491.13112-140E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13112-140E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekNucleusLongnonpolyaPlusRawSigRep3 NHEK nuc pA- + 1 bigWig 1.000000 15331443.000000 NHEK nucleus polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 670 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK nucleus polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHEK nuc pA- + 1\ subGroups view=PlusSignal cellType=t3NHEK localization=NUCLEUS rnaExtract=PAM rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekNucleusLongnonpolyaPlusRawSigRep3\ type bigWig 1.000000 15331443.000000\ wgEncodeAwgTfbsHaibSknmcFoxp2Pcr2xUniPk SK-N-MC FOXP2 narrowPeak SK-N-MC TFBS Uniform Peaks of FOXP2 from ENCODE/HudsonAlpha/Analysis 1 670 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-MC TFBS Uniform Peaks of FOXP2 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel SK-N-MC FOXP2\ subGroups tier=a30 cellType=SKNMC factor=FOXP2 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibSknmcFoxp2Pcr2xUniPk\ wgEncodeHaibTfbsA549RxlchPcr1xEtoh02RawRep1 A549 RX Eth PC1 1 bigWig 0.153953 179.701996 A549 Control EtOH PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 671 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Control EtOH PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 RX Eth PC1 1\ subGroups view=RawSignal factor=zRXLCH cellType=t2A549 protocol=PCR1X treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549RxlchPcr1xEtoh02RawRep1\ type bigWig 0.153953 179.701996\ wgEncodeSydhTfbsGm18505Pol2IggmusSig GM05 Pol2 IgM bigWig 0.000000 13989.200195 GM18505 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 671 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM18505 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM05 Pol2 IgM\ subGroups view=Signal factor=POL2 cellType=t3GM18505 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm18505Pol2IggmusSig\ type bigWig 0.000000 13989.200195\ encTfChipPkENCFF986MHU K562 NFXL1 narrowPeak Transcription Factor ChIP-seq Peaks of NFXL1 in K562 from ENCODE 3 (ENCFF986MHU) 1 671 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NFXL1 in K562 from ENCODE 3 (ENCFF986MHU)\ parent encTfChipPk off\ shortLabel K562 NFXL1\ subGroups cellType=K562 factor=NFXL1\ track encTfChipPkENCFF986MHU\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_ctss_fwd Mcf7ToEgf1_08hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_forward 0 671 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep3.CNhs12753.13178-141D1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13178-141D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_tpm_fwd Mcf7ToEgf1_08hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_forward 1 671 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep3.CNhs12753.13178-141D1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13178-141D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekNucleusLongnonpolyaPlusRawSigRep4 NHEK nuc pA- + 2 bigWig 1.000000 7824493.000000 NHEK nucleus polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 671 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK nucleus polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHEK nuc pA- + 2\ subGroups view=PlusSignal cellType=t3NHEK localization=NUCLEUS rnaExtract=PAM rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqNhekNucleusLongnonpolyaPlusRawSigRep4\ type bigWig 1.000000 7824493.000000\ wgEncodeAwgTfbsHaibSknmcPol24h8V0416101UniPk SK-N-MC POLR2A narrowPeak SK-N-MC TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis 1 671 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-MC TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel SK-N-MC POLR2A\ subGroups tier=a30 cellType=SKNMC factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibSknmcPol24h8V0416101UniPk\ wgEncodeHaibTfbsA549RxlchPcr2xEtoh02RawRep1 A549 RX Eth PC2 1 bigWig 0.125563 135.167999 A549 Control EtOH PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 672 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Control EtOH PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 RX Eth PC2 1\ subGroups view=RawSignal factor=zRXLCH cellType=t2A549 protocol=PCR2X treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549RxlchPcr2xEtoh02RawRep1\ type bigWig 0.125563 135.167999\ wgEncodeSydhTfbsGm18505InputIggmusSig GM05 Inpt IgM bigWig 0.000000 106648.500000 GM18505 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 672 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM18505 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM05 Inpt IgM\ subGroups view=Signal factor=ZZZINPUTIGGmus cellType=t3GM18505 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm18505InputIggmusSig\ type bigWig 0.000000 106648.500000\ encTfChipPkENCFF954NAJ K562 NR0B1 narrowPeak Transcription Factor ChIP-seq Peaks of NR0B1 in K562 from ENCODE 3 (ENCFF954NAJ) 1 672 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NR0B1 in K562 from ENCODE 3 (ENCFF954NAJ)\ parent encTfChipPk off\ shortLabel K562 NR0B1\ subGroups cellType=K562 factor=NR0B1\ track encTfChipPkENCFF954NAJ\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_ctss_rev Mcf7ToEgf1_08hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_reverse 0 672 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep3.CNhs12753.13178-141D1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13178-141D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_tpm_rev Mcf7ToEgf1_08hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_reverse 1 672 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep3.CNhs12753.13178-141D1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13178-141D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1\ urlLabel FANTOM5 Details:\ wgEncodeCshlLongRnaSeqNhekNucleusPapAlnRep3 NHEK nuc pA+ A 1 bam NHEK nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 672 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK nucleus polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHEK nuc pA+ A 1\ subGroups view=Alignments cellType=t3NHEK localization=NUCLEUS rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekNucleusPapAlnRep3\ type bam\ wgEncodeAwgTfbsHaibSknshraCtcfV0416102UniPk SK-N-SH_RA CTCF h narrowPeak SK-N-SH_RA TFBS Uniform Peaks of CTCF from ENCODE/HudsonAlpha/Analysis 1 672 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA TFBS Uniform Peaks of CTCF from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel SK-N-SH_RA CTCF h\ subGroups tier=a30 cellType=SKNSHRA factor=CTCF lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibSknshraCtcfV0416102UniPk\ wgEncodeHaibTfbsA549RxlchV0416101Etoh02RawRep1 A549 RvXL V101 1 bigWig 0.148981 209.354996 A549 Control EtOH v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 673 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Control EtOH v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 RvXL V101 1\ subGroups view=RawSignal factor=zRXLCH cellType=t2A549 protocol=V0416101 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549RxlchV0416101Etoh02RawRep1\ type bigWig 0.148981 209.354996\ wgEncodeSydhTfbsGm18505InputTnfaIggrabSig GM05 TNF Inpt IgR bigWig 0.000000 9532.299805 GM18505 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 673 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM18505 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM05 TNF Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t3GM18505 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm18505InputTnfaIggrabSig\ type bigWig 0.000000 9532.299805\ encTfChipPkENCFF664ZGR K562 NR2C1 narrowPeak Transcription Factor ChIP-seq Peaks of NR2C1 in K562 from ENCODE 3 (ENCFF664ZGR) 1 673 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NR2C1 in K562 from ENCODE 3 (ENCFF664ZGR)\ parent encTfChipPk off\ shortLabel K562 NR2C1\ subGroups cellType=K562 factor=NR2C1\ track encTfChipPkENCFF664ZGR\ wgEncodeCshlLongRnaSeqNhekNucleusPapAlnRep4 NHEK nuc pA+ A 2 bam NHEK nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 673 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK nucleus polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHEK nuc pA+ A 2\ subGroups view=Alignments cellType=t3NHEK localization=NUCLEUS rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqNhekNucleusPapAlnRep4\ type bam\ wgEncodeAwgTfbsUwSknshraCtcfUniPk SK-N-SH_RA CTCF w narrowPeak SK-N-SH_RA TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 673 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel SK-N-SH_RA CTCF w\ subGroups tier=a30 cellType=SKNSHRA factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwSknshraCtcfUniPk\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_ctss_fwd Tc:Mcf7ToHrg_00hr15minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_forward 0 673 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep1.CNhs12435.13048-139G6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13048-139G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_tpm_fwd Tc:Mcf7ToHrg_00hr15minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_forward 1 673 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep1.CNhs12435.13048-139G6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13048-139G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsA549RxlchV0422111Etoh02RawRep1 A549 RX Eth V11 1 bigWig 0.079808 214.365005 A549 Control EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 674 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Control EtOH v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 RX Eth V11 1\ subGroups view=RawSignal factor=zRXLCH cellType=t2A549 protocol=V0422111 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsA549RxlchV0422111Etoh02RawRep1\ type bigWig 0.079808 214.365005\ wgEncodeSydhTfbsGm18526NfkbTnfaIggrabPk GM26 TNF NKB IgR narrowPeak GM18526 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH 3 674 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM18526 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM26 TNF NKB IgR\ subGroups view=Peaks factor=NFKB cellType=t3GM18526 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm18526NfkbTnfaIggrabPk\ type narrowPeak\ encTfChipPkENCFF594LCH K562 NR2C2 narrowPeak Transcription Factor ChIP-seq Peaks of NR2C2 in K562 from ENCODE 3 (ENCFF594LCH) 1 674 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NR2C2 in K562 from ENCODE 3 (ENCFF594LCH)\ parent encTfChipPk off\ shortLabel K562 NR2C2\ subGroups cellType=K562 factor=NR2C2\ track encTfChipPkENCFF594LCH\ wgEncodeCshlLongRnaSeqNhekNucleusPapContigs NHEK nuc pA+ C bed 6 + NHEK nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 674 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK nucleus polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel NHEK nuc pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3NHEK localization=NUCLEUS rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqNhekNucleusPapContigs\ type bed 6 +\ wgEncodeAwgTfbsHaibSknshraP300V0416102UniPk SK-N-SH_RA EP300 narrowPeak SK-N-SH_RA TFBS Uniform Peaks of p300 from ENCODE/HudsonAlpha/Analysis 1 674 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA TFBS Uniform Peaks of p300 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel SK-N-SH_RA EP300\ subGroups tier=a30 cellType=SKNSHRA factor=EP300 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibSknshraP300V0416102UniPk\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_ctss_rev Tc:Mcf7ToHrg_00hr15minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_reverse 0 674 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep1.CNhs12435.13048-139G6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13048-139G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_tpm_rev Tc:Mcf7ToHrg_00hr15minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_reverse 1 674 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep1.CNhs12435.13048-139G6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13048-139G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsA549RxlchV0422111RawRep1 A549 RvXL V11 1 bigWig 1.000000 13908.000000 A549 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 675 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 RvXL V11 1\ subGroups view=RawSignal factor=zRXLCH cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsA549RxlchV0422111RawRep1\ type bigWig 1.000000 13908.000000\ wgEncodeSydhTfbsGm18526NfkbTnfaIggrabSig GM26 TNF NKB IgR bigWig 0.000000 12970.400391 GM18526 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 675 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM18526 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM26 TNF NKB IgR\ subGroups view=Signal factor=NFKB cellType=t3GM18526 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm18526NfkbTnfaIggrabSig\ type bigWig 0.000000 12970.400391\ encTfChipPkENCFF175IIE K562 NR2F1 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F1 in K562 from ENCODE 3 (ENCFF175IIE) 1 675 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NR2F1 in K562 from ENCODE 3 (ENCFF175IIE)\ parent encTfChipPk off\ shortLabel K562 NR2F1\ subGroups cellType=K562 factor=NR2F1\ track encTfChipPkENCFF175IIE\ wgEncodeCshlLongRnaSeqNhekNucleusPapJunctions NHEK nuc pA+ J bed 6 + NHEK nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 675 179 0 134 217 127 194 0 0 0 expression 1 color 179,0,134\ longLabel NHEK nucleus polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel NHEK nuc pA+ J\ subGroups view=Junctions cellType=t3NHEK localization=NUCLEUS rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqNhekNucleusPapJunctions\ type bed 6 +\ wgEncodeAwgTfbsHaibSknshraRad21V0416102UniPk SK-N-SH_RA RAD21 narrowPeak SK-N-SH_RA TFBS Uniform Peaks of Rad21 from ENCODE/HudsonAlpha/Analysis 1 675 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA TFBS Uniform Peaks of Rad21 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel SK-N-SH_RA RAD21\ subGroups tier=a30 cellType=SKNSHRA factor=RAD21 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibSknshraRad21V0416102UniPk\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_ctss_fwd Tc:Mcf7ToHrg_00hr15minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_forward 0 675 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep2.CNhs12652.13114-140E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13114-140E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_tpm_fwd Tc:Mcf7ToHrg_00hr15minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_forward 1 675 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep2.CNhs12652.13114-140E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13114-140E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsA549RxlchV0422111RawRep2 A549 RvXL V11 2 bigWig 1.000000 2808.000000 A549 Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 676 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 RvXL V11 2\ subGroups view=RawSignal factor=zRXLCH cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsA549RxlchV0422111RawRep2\ type bigWig 1.000000 2808.000000\ wgEncodeSydhTfbsGm18526Pol2IggmusPk GM26 Pol2 IgM narrowPeak GM18526 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 676 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM18526 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM26 Pol2 IgM\ subGroups view=Peaks factor=POL2 cellType=t3GM18526 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm18526Pol2IggmusPk\ type narrowPeak\ encTfChipPkENCFF255EOB K562 NR2F2 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F2 in K562 from ENCODE 3 (ENCFF255EOB) 1 676 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NR2F2 in K562 from ENCODE 3 (ENCFF255EOB)\ parent encTfChipPk off\ shortLabel K562 NR2F2\ subGroups cellType=K562 factor=NR2F2\ track encTfChipPkENCFF255EOB\ wgEncodeCshlLongRnaSeqNhekNucleusPapMinusRawSigRep3 NHEK nuc pA+ - 1 bigWig 1.000000 397759.000000 NHEK nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 676 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK nucleus polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHEK nuc pA+ - 1\ subGroups view=MinusSignal cellType=t3NHEK localization=NUCLEUS rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekNucleusPapMinusRawSigRep3\ type bigWig 1.000000 397759.000000\ wgEncodeAwgTfbsHaibSknshraUsf1sc8983V0416102UniPk SK-N-SH_RA USF1 narrowPeak SK-N-SH_RA TFBS Uniform Peaks of USF1_(SC-8983) from ENCODE/HudsonAlpha/Analysis 1 676 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA TFBS Uniform Peaks of USF1_(SC-8983) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel SK-N-SH_RA USF1\ subGroups tier=a30 cellType=SKNSHRA factor=USF1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibSknshraUsf1sc8983V0416102UniPk\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_ctss_rev Tc:Mcf7ToHrg_00hr15minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_reverse 0 676 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep2.CNhs12652.13114-140E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13114-140E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_tpm_rev Tc:Mcf7ToHrg_00hr15minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_reverse 1 676 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep2.CNhs12652.13114-140E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13114-140E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsA549RxlchV0422111RawRep3 A549 RvXL V11 3 bigWig 1.000000 5425.000000 A549 Control v042211.1 ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB 2 677 0 0 0 127 127 127 0 0 0 regulation 0 longLabel A549 Control v042211.1 ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel A549 RvXL V11 3\ subGroups view=RawSignal factor=zRXLCH cellType=t2A549 protocol=V0422111 treatment=NONE rep=rep3\ track wgEncodeHaibTfbsA549RxlchV0422111RawRep3\ type bigWig 1.000000 5425.000000\ wgEncodeSydhTfbsGm18526Pol2IggmusSig GM26 Pol2 IgM bigWig 0.000000 19671.599609 GM18526 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 677 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM18526 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM26 Pol2 IgM\ subGroups view=Signal factor=POL2 cellType=t3GM18526 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm18526Pol2IggmusSig\ type bigWig 0.000000 19671.599609\ encTfChipPkENCFF712AXK K562 NR2F6 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F6 in K562 from ENCODE 3 (ENCFF712AXK) 1 677 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NR2F6 in K562 from ENCODE 3 (ENCFF712AXK)\ parent encTfChipPk off\ shortLabel K562 NR2F6\ subGroups cellType=K562 factor=NR2F6\ track encTfChipPkENCFF712AXK\ wgEncodeCshlLongRnaSeqNhekNucleusPapMinusRawSigRep4 NHEK nuc pA+ - 2 bigWig 1.000000 433842.000000 NHEK nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 677 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK nucleus polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHEK nuc pA+ - 2\ subGroups view=MinusSignal cellType=t3NHEK localization=NUCLEUS rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqNhekNucleusPapMinusRawSigRep4\ type bigWig 1.000000 433842.000000\ wgEncodeAwgTfbsHaibSknshraYy1sc281V0416102UniPk SK-N-SH_RA YY1 narrowPeak SK-N-SH_RA TFBS Uniform Peaks of YY1_(SC-281) from ENCODE/HudsonAlpha/Analysis 1 677 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH_RA TFBS Uniform Peaks of YY1_(SC-281) from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel SK-N-SH_RA YY1\ subGroups tier=a30 cellType=SKNSHRA factor=YY1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibSknshraYy1sc281V0416102UniPk\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_ctss_fwd Tc:Mcf7ToHrg_00hr15minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_forward 0 677 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep3.CNhs12754.13180-141D3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13180-141D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_tpm_fwd Tc:Mcf7ToHrg_00hr15minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_forward 1 677 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep3.CNhs12754.13180-141D3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13180-141D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsGm18526InputIggmusSig GM26 Inpt IgM bigWig 0.000000 12202.799805 GM18526 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 678 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM18526 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM26 Inpt IgM\ subGroups view=Signal factor=ZZZINPUTIGGmus cellType=t3GM18526 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm18526InputIggmusSig\ type bigWig 0.000000 12202.799805\ wgEncodeHaibTfbsH1neuronsNrsfV0422111PkRep1 H1-neu NRSF V11 1 broadPeak H1-neurons NRSF v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 678 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H1-neurons NRSF v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel H1-neu NRSF V11 1\ subGroups view=Peaks factor=NRSF cellType=t2H1NEURONS protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1neuronsNrsfV0422111PkRep1\ type broadPeak\ encTfChipPkENCFF583CIY K562 NR3C1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in K562 from ENCODE 3 (ENCFF583CIY) 1 678 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in K562 from ENCODE 3 (ENCFF583CIY)\ parent encTfChipPk off\ shortLabel K562 NR3C1 1\ subGroups cellType=K562 factor=NR3C1\ track encTfChipPkENCFF583CIY\ wgEncodeCshlLongRnaSeqNhekNucleusPapPlusRawSigRep3 NHEK nuc pA+ + 1 bigWig 1.000000 466812.000000 NHEK nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 678 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK nucleus polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHEK nuc pA+ + 1\ subGroups view=PlusSignal cellType=t3NHEK localization=NUCLEUS rnaExtract=PAP rep=rep3 rank=rank1\ track wgEncodeCshlLongRnaSeqNhekNucleusPapPlusRawSigRep3\ type bigWig 1.000000 466812.000000\ wgEncodeAwgTfbsHaibT47dCtcfsc5916V0416102Dm002p1hUniPk T-47D+DMSO CTCF narrowPeak T-47D (DMSO) TFBS Uniform Peaks of CTCF_(SC-5916) ENCODE/HudsonAlpha/Analysis 1 678 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D (DMSO) TFBS Uniform Peaks of CTCF_(SC-5916) ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel T-47D+DMSO CTCF\ subGroups tier=a30 cellType=T47D factor=CTCF lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibT47dCtcfsc5916V0416102Dm002p1hUniPk\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_ctss_rev Tc:Mcf7ToHrg_00hr15minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_reverse 0 678 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep3.CNhs12754.13180-141D3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13180-141D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_tpm_rev Tc:Mcf7ToHrg_00hr15minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_reverse 1 678 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep3.CNhs12754.13180-141D3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13180-141D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsGm18526InputTnfaIggrabSig GM26 TNF Inpt IgR bigWig 0.000000 13078.500000 GM18526 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 679 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM18526 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM26 TNF Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t3GM18526 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm18526InputTnfaIggrabSig\ type bigWig 0.000000 13078.500000\ wgEncodeHaibTfbsH1neuronsNrsfV0422111RawRep1 H1-neu NRSF 1 bigWig 1.000000 3070.000000 H1-neurons NRSF v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 679 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H1-neurons NRSF v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel H1-neu NRSF 1\ subGroups view=RawSignal factor=NRSF cellType=t2H1NEURONS protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1neuronsNrsfV0422111RawRep1\ type bigWig 1.000000 3070.000000\ encTfChipPkENCFF784FIE K562 NR3C1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in K562 from ENCODE 3 (ENCFF784FIE) 1 679 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in K562 from ENCODE 3 (ENCFF784FIE)\ parent encTfChipPk off\ shortLabel K562 NR3C1 2\ subGroups cellType=K562 factor=NR3C1\ track encTfChipPkENCFF784FIE\ wgEncodeCshlLongRnaSeqNhekNucleusPapPlusRawSigRep4 NHEK nuc pA+ + 2 bigWig 1.000000 504737.000000 NHEK nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 679 179 0 134 217 127 194 0 0 0 expression 0 color 179,0,134\ longLabel NHEK nucleus polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHEK nuc pA+ + 2\ subGroups view=PlusSignal cellType=t3NHEK localization=NUCLEUS rnaExtract=PAP rep=rep4 rank=rank2\ track wgEncodeCshlLongRnaSeqNhekNucleusPapPlusRawSigRep4\ type bigWig 1.000000 504737.000000\ wgEncodeAwgTfbsHaibT47dP300V0416102Dm002p1hUniPk T-47D+DMSO EP300 narrowPeak T-47D (DMSO) TFBS Uniform Peaks of p300 from ENCODE/HudsonAlpha/Analysis 1 679 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D (DMSO) TFBS Uniform Peaks of p300 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel T-47D+DMSO EP300\ subGroups tier=a30 cellType=T47D factor=EP300 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibT47dP300V0416102Dm002p1hUniPk\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_ctss_fwd Tc:Mcf7ToHrg_00hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_forward 0 679 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep1.CNhs12436.13049-139G7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13049-139G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_tpm_fwd Tc:Mcf7ToHrg_00hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_forward 1 679 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep1.CNhs12436.13049-139G7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13049-139G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsGm18951NfkbTnfaIggrabPk GM51 TNF NKB IgR narrowPeak GM18951 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH 3 680 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM18951 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM51 TNF NKB IgR\ subGroups view=Peaks factor=NFKB cellType=t3GM18951 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm18951NfkbTnfaIggrabPk\ type narrowPeak\ wgEncodeHaibTfbsH1neuronsNrsfV0422111PkRep2 H1-neu NRSF V11 2 broadPeak H1-neurons NRSF v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 680 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H1-neurons NRSF v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel H1-neu NRSF V11 2\ subGroups view=Peaks factor=NRSF cellType=t2H1NEURONS protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1neuronsNrsfV0422111PkRep2\ type broadPeak\ encTfChipPkENCFF144PPR K562 NRF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF144PPR) 1 680 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF144PPR)\ parent encTfChipPk off\ shortLabel K562 NRF1 1\ subGroups cellType=K562 factor=NRF1\ track encTfChipPkENCFF144PPR\ wgEncodeCshlLongRnaSeqNhemfm26022001CellTotalAlnRep1 NHMf cel tot A 1 bam NHEM.f M2 whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 680 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHEM.f M2 whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHMf cel tot A 1\ subGroups view=Alignments cellType=t3NHEMFM2 localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhemfm26022001CellTotalAlnRep1\ type bam\ wgEncodeAwgTfbsHaibT47dEraaV0416102Bpa1hUniPk T-47D+BPA ESR1 narrowPeak T-47D (BPA) TFBS Uniform Peaks of ERalpha_a from ENCODE/HudsonAlpha/Analysis 1 680 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D (BPA) TFBS Uniform Peaks of ERalpha_a from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel T-47D+BPA ESR1\ subGroups tier=a30 cellType=T47D factor=ESR1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibT47dEraaV0416102Bpa1hUniPk\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_ctss_rev Tc:Mcf7ToHrg_00hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_reverse 0 680 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep1.CNhs12436.13049-139G7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13049-139G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_tpm_rev Tc:Mcf7ToHrg_00hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_reverse 1 680 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep1.CNhs12436.13049-139G7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13049-139G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsGm18951NfkbTnfaIggrabSig GM51 TNF NKB IgR bigWig 0.000000 6628.500000 GM18951 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 681 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM18951 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM51 TNF NKB IgR\ subGroups view=Signal factor=NFKB cellType=t3GM18951 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm18951NfkbTnfaIggrabSig\ type bigWig 0.000000 6628.500000\ wgEncodeHaibTfbsH1neuronsNrsfV0422111RawRep2 H1-neu NRSF 2 bigWig 1.000000 1842.000000 H1-neurons NRSF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 681 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H1-neurons NRSF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel H1-neu NRSF 2\ subGroups view=RawSignal factor=NRSF cellType=t2H1NEURONS protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1neuronsNrsfV0422111RawRep2\ type bigWig 1.000000 1842.000000\ encTfChipPkENCFF992QZV K562 NRF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF992QZV) 1 681 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF992QZV)\ parent encTfChipPk off\ shortLabel K562 NRF1 2\ subGroups cellType=K562 factor=NRF1\ track encTfChipPkENCFF992QZV\ wgEncodeCshlLongRnaSeqNhemfm250713022CellTotalAlnRep2 NHMf cel tot A 2 bam NHEM.f M2 whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 681 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHEM.f M2 whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHMf cel tot A 2\ subGroups view=Alignments cellType=t3NHEMFM2 localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhemfm250713022CellTotalAlnRep2\ type bam\ wgEncodeAwgTfbsHaibT47dEralphaaV0416102Est10nm1hUniPk T-47D+Estrad ESR1 narrowPeak T-47D (Estradiol) TFBS Uniform Peaks of ERalpha_a ENCODE/HudsonAlpha/Analysis 1 681 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D (Estradiol) TFBS Uniform Peaks of ERalpha_a ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel T-47D+Estrad ESR1\ subGroups tier=a30 cellType=T47D factor=ESR1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibT47dEralphaaV0416102Est10nm1hUniPk\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_ctss_fwd Tc:Mcf7ToHrg_00hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_forward 0 681 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep2.CNhs12653.13115-140F1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13115-140F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_tpm_fwd Tc:Mcf7ToHrg_00hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_forward 1 681 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep2.CNhs12653.13115-140F1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13115-140F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsGm18951Pol2IggmusPk GM51 Pol2 IgM narrowPeak GM18951 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 682 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM18951 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM51 Pol2 IgM\ subGroups view=Peaks factor=POL2 cellType=t3GM18951 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm18951Pol2IggmusPk\ type narrowPeak\ wgEncodeHaibTfbsH1neuronsPol24h8V0422111PkRep1 H1-neu Pol2-4H8 1 broadPeak H1-neurons Pol2-4H8 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 682 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H1-neurons Pol2-4H8 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel H1-neu Pol2-4H8 1\ subGroups view=Peaks factor=POL24H8 cellType=t2H1NEURONS protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1neuronsPol24h8V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF493ABN K562 NRF1 3 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF493ABN) 1 682 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF493ABN)\ parent encTfChipPk off\ shortLabel K562 NRF1 3\ subGroups cellType=K562 factor=NRF1\ track encTfChipPkENCFF493ABN\ wgEncodeCshlLongRnaSeqNhemfm2CellTotalContigs NHMf cel tot C bed 6 + NHEM.f M2 whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 682 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHEM.f M2 whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel NHMf cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3NHEMFM2 localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqNhemfm2CellTotalContigs\ type bed 6 +\ wgEncodeAwgTfbsHaibT47dEralphaaPcr2xGen1hUniPk T-47D+Genist ESR1 narrowPeak T-47D (Genistein) TFBS Uniform Peaks of ERalpha_a ENCODE/HudsonAlpha/Analysis 1 682 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D (Genistein) TFBS Uniform Peaks of ERalpha_a ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel T-47D+Genist ESR1\ subGroups tier=a30 cellType=T47D factor=ESR1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibT47dEralphaaPcr2xGen1hUniPk\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_ctss_rev Tc:Mcf7ToHrg_00hr30minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_reverse 0 682 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep2.CNhs12653.13115-140F1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13115-140F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_tpm_rev Tc:Mcf7ToHrg_00hr30minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_reverse 1 682 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep2.CNhs12653.13115-140F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13115-140F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsGm18951Pol2IggmusSig GM51 Pol2 IgM bigWig 0.000000 10967.400391 GM18951 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 683 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM18951 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM51 Pol2 IgM\ subGroups view=Signal factor=POL2 cellType=t3GM18951 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm18951Pol2IggmusSig\ type bigWig 0.000000 10967.400391\ wgEncodeHaibTfbsH1neuronsPol24h8V0422111RawRep1 H1-neu Pol2-4H8 1 bigWig 1.000000 1377.000000 H1-neurons Pol2-4H8 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 683 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H1-neurons Pol2-4H8 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel H1-neu Pol2-4H8 1\ subGroups view=RawSignal factor=POL24H8 cellType=t2H1NEURONS protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1neuronsPol24h8V0422111RawRep1\ type bigWig 1.000000 1377.000000\ encTfChipPkENCFF289BUU K562 NUFIP1 narrowPeak Transcription Factor ChIP-seq Peaks of NUFIP1 in K562 from ENCODE 3 (ENCFF289BUU) 1 683 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of NUFIP1 in K562 from ENCODE 3 (ENCFF289BUU)\ parent encTfChipPk off\ shortLabel K562 NUFIP1\ subGroups cellType=K562 factor=NUFIP1\ track encTfChipPkENCFF289BUU\ wgEncodeCshlLongRnaSeqNhemfm2CellTotalJunctions NHMf cel tot J bed 6 + NHEM.f M2 whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 683 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHEM.f M2 whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel NHMf cel tot J\ subGroups view=Junctions cellType=t3NHEMFM2 localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqNhemfm2CellTotalJunctions\ type bed 6 +\ wgEncodeAwgTfbsHaibT47dFoxa1sc6553V0416102Dm002p1hUniPk T-47D+DMSO FOXA1 narrowPeak T-47D (DMSO) TFBS Uniform Peaks of FOXA1_(SC-6553) ENCODE/HudsonAlpha/Analysis 1 683 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D (DMSO) TFBS Uniform Peaks of FOXA1_(SC-6553) ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel T-47D+DMSO FOXA1\ subGroups tier=a30 cellType=T47D factor=FOXA1 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibT47dFoxa1sc6553V0416102Dm002p1hUniPk\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_ctss_fwd Tc:Mcf7ToHrg_00hr30minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_forward 0 683 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep3.CNhs12755.13181-141D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13181-141D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_tpm_fwd Tc:Mcf7ToHrg_00hr30minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_forward 1 683 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep3.CNhs12755.13181-141D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13181-141D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsGm18951InputIggmusSig GM51 Inpt IgM bigWig 0.000000 9889.299805 GM18951 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 684 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM18951 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM51 Inpt IgM\ subGroups view=Signal factor=ZZZINPUTIGGmus cellType=t3GM18951 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm18951InputIggmusSig\ type bigWig 0.000000 9889.299805\ wgEncodeHaibTfbsH1neuronsPol24h8V0422111PkRep2 H1-neu Pol2-4H8 2 broadPeak H1-neurons Pol2-4H8 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 684 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H1-neurons Pol2-4H8 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel H1-neu Pol2-4H8 2\ subGroups view=Peaks factor=POL24H8 cellType=t2H1NEURONS protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1neuronsPol24h8V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF941RVL K562 PCBP1 narrowPeak Transcription Factor ChIP-seq Peaks of PCBP1 in K562 from ENCODE 3 (ENCFF941RVL) 1 684 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of PCBP1 in K562 from ENCODE 3 (ENCFF941RVL)\ parent encTfChipPk off\ shortLabel K562 PCBP1\ subGroups cellType=K562 factor=PCBP1\ track encTfChipPkENCFF941RVL\ wgEncodeCshlLongRnaSeqNhemfm26022001CellTotalMinusRep1 NHMf cel tot - 1 bigWig 1.000000 19337782.000000 NHEM.f M2 whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 684 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM.f M2 whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHMf cel tot - 1\ subGroups view=MinusSignal cellType=t3NHEMFM2 localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhemfm26022001CellTotalMinusRep1\ type bigWig 1.000000 19337782.000000\ wgEncodeAwgTfbsHaibT47dGata3sc268V0416102Dm002p1hUniPk T-47D+DMSO GATA3 narrowPeak T-47D (DMSO) TFBS Uniform Peaks of GATA3_(SC-268) ENCODE/HudsonAlpha/Analysis 1 684 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D (DMSO) TFBS Uniform Peaks of GATA3_(SC-268) ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel T-47D+DMSO GATA3\ subGroups tier=a30 cellType=T47D factor=GATA3 lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibT47dGata3sc268V0416102Dm002p1hUniPk\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_ctss_rev Tc:Mcf7ToHrg_00hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_reverse 0 684 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep3.CNhs12755.13181-141D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13181-141D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_tpm_rev Tc:Mcf7ToHrg_00hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_reverse 1 684 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep3.CNhs12755.13181-141D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13181-141D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsGm18951InputTnfaIggrabSig GM51 TNF Inpt IgR bigWig 0.000000 8158.299805 GM18951 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 685 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM18951 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM51 TNF Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t3GM18951 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm18951InputTnfaIggrabSig\ type bigWig 0.000000 8158.299805\ wgEncodeHaibTfbsH1neuronsPol24h8V0422111RawRep2 H1-neu Pol2-4H8 2 bigWig 1.000000 1083.000000 H1-neurons Pol2-4H8 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 685 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H1-neurons Pol2-4H8 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel H1-neu Pol2-4H8 2\ subGroups view=RawSignal factor=POL24H8 cellType=t2H1NEURONS protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1neuronsPol24h8V0422111RawRep2\ type bigWig 1.000000 1083.000000\ encTfChipPkENCFF881XQF K562 PCBP2 narrowPeak Transcription Factor ChIP-seq Peaks of PCBP2 in K562 from ENCODE 3 (ENCFF881XQF) 1 685 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of PCBP2 in K562 from ENCODE 3 (ENCFF881XQF)\ parent encTfChipPk off\ shortLabel K562 PCBP2\ subGroups cellType=K562 factor=PCBP2\ track encTfChipPkENCFF881XQF\ wgEncodeCshlLongRnaSeqNhemfm250713022CellTotalMinusRep2 NHMf cel tot - 2 bigWig 1.000000 6662958.000000 NHEM.f M2 whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 685 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM.f M2 whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHMf cel tot - 2\ subGroups view=MinusSignal cellType=t3NHEMFM2 localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhemfm250713022CellTotalMinusRep2\ type bigWig 1.000000 6662958.000000\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_ctss_fwd Tc:Mcf7ToHrg_00hr45minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_forward 0 685 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep1.CNhs12437.13050-139G8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13050-139G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_tpm_fwd Tc:Mcf7ToHrg_00hr45minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_forward 1 685 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep1.CNhs12437.13050-139G8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13050-139G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsSydhU2osKap1UcdUniPk U2OS KAP1 narrowPeak U2OS TFBS Uniform Peaks of KAP1 from ENCODE/USC/Analysis 1 685 0 0 0 127 127 127 0 0 0 regulation 1 longLabel U2OS TFBS Uniform Peaks of KAP1 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel U2OS KAP1\ subGroups tier=a30 cellType=U2OS factor=KAP1 lab=USC\ track wgEncodeAwgTfbsSydhU2osKap1UcdUniPk\ wgEncodeSydhTfbsGm19099NfkbTnfaIggrabPk GM99 TNF NKB IgR narrowPeak GM19099 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH 3 686 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM19099 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM99 TNF NKB IgR\ subGroups view=Peaks factor=NFKB cellType=t3GM19099 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm19099NfkbTnfaIggrabPk\ type narrowPeak\ wgEncodeHaibTfbsH1neuronsTaf1V0422111PkRep1 H1-neu TAF1 1 broadPeak H1-neurons TAF1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 686 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H1-neurons TAF1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel H1-neu TAF1 1\ subGroups view=Peaks factor=TAF1 cellType=t2H1NEURONS protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1neuronsTaf1V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF462FRU K562 PHB2 narrowPeak Transcription Factor ChIP-seq Peaks of PHB2 in K562 from ENCODE 3 (ENCFF462FRU) 1 686 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of PHB2 in K562 from ENCODE 3 (ENCFF462FRU)\ parent encTfChipPk off\ shortLabel K562 PHB2\ subGroups cellType=K562 factor=PHB2\ track encTfChipPkENCFF462FRU\ wgEncodeCshlLongRnaSeqNhemfm26022001CellTotalPlusRep1 NHMf cel tot + 1 bigWig 1.000000 14501172.000000 NHEM.f M2 whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 686 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM.f M2 whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHMf cel tot + 1\ subGroups view=PlusSignal cellType=t3NHEMFM2 localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhemfm26022001CellTotalPlusRep1\ type bigWig 1.000000 14501172.000000\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_ctss_rev Tc:Mcf7ToHrg_00hr45minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_reverse 0 686 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep1.CNhs12437.13050-139G8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13050-139G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_tpm_rev Tc:Mcf7ToHrg_00hr45minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_reverse 1 686 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep1.CNhs12437.13050-139G8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13050-139G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsSydhU2osSetdb1UcdUniPk U2OS SETDB1 narrowPeak U2OS TFBS Uniform Peaks of SETDB1 from ENCODE/USC/Analysis 1 686 0 0 0 127 127 127 0 0 0 regulation 1 longLabel U2OS TFBS Uniform Peaks of SETDB1 from ENCODE/USC/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel U2OS SETDB1\ subGroups tier=a30 cellType=U2OS factor=SETDB1 lab=USC\ track wgEncodeAwgTfbsSydhU2osSetdb1UcdUniPk\ wgEncodeSydhTfbsGm19099NfkbTnfaIggrabSig GM99 TNF NKB IgR bigWig 0.000000 8512.299805 GM19099 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 687 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM19099 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM99 TNF NKB IgR\ subGroups view=Signal factor=NFKB cellType=t3GM19099 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm19099NfkbTnfaIggrabSig\ type bigWig 0.000000 8512.299805\ wgEncodeHaibTfbsH1neuronsTaf1V0422111RawRep1 H1-neu TAF1 1 bigWig 1.000000 2734.000000 H1-neurons TAF1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 687 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H1-neurons TAF1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel H1-neu TAF1 1\ subGroups view=RawSignal factor=TAF1 cellType=t2H1NEURONS protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1neuronsTaf1V0422111RawRep1\ type bigWig 1.000000 2734.000000\ encTfChipPkENCFF948YVM K562 PHF20 narrowPeak Transcription Factor ChIP-seq Peaks of PHF20 in K562 from ENCODE 3 (ENCFF948YVM) 1 687 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of PHF20 in K562 from ENCODE 3 (ENCFF948YVM)\ parent encTfChipPk off\ shortLabel K562 PHF20\ subGroups cellType=K562 factor=PHF20\ track encTfChipPkENCFF948YVM\ wgEncodeCshlLongRnaSeqNhemfm250713022CellTotalPlusRep2 NHMf cel tot + 2 bigWig 1.000000 5141214.000000 NHEM.f M2 whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 687 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM.f M2 whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHMf cel tot + 2\ subGroups view=PlusSignal cellType=t3NHEMFM2 localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhemfm250713022CellTotalPlusRep2\ type bigWig 1.000000 5141214.000000\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_ctss_fwd Tc:Mcf7ToHrg_00hr45minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_forward 0 687 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep2.CNhs12654.13116-140F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13116-140F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_tpm_fwd Tc:Mcf7ToHrg_00hr45minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_forward 1 687 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep2.CNhs12654.13116-140F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13116-140F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsHaibU87Pol24h8V0416101UniPk U87 POLR2A narrowPeak U87 TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis 1 687 0 0 0 127 127 127 0 0 0 regulation 1 longLabel U87 TFBS Uniform Peaks of Pol2-4H8 from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel U87 POLR2A\ subGroups tier=a30 cellType=U87 factor=POLR2A lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibU87Pol24h8V0416101UniPk\ wgEncodeSydhTfbsGm19099Pol2IggmusPk GM99 Pol2 IgM narrowPeak GM19099 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 688 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM19099 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM99 Pol2 IgM\ subGroups view=Peaks factor=POL2 cellType=t3GM19099 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm19099Pol2IggmusPk\ type narrowPeak\ wgEncodeHaibTfbsH1neuronsTaf1V0422111PkRep2 H1-neu TAF1 2 broadPeak H1-neurons TAF1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 688 0 0 0 127 127 127 0 0 0 regulation 1 longLabel H1-neurons TAF1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel H1-neu TAF1 2\ subGroups view=Peaks factor=TAF1 cellType=t2H1NEURONS protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1neuronsTaf1V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF134CUM K562 PHF21A narrowPeak Transcription Factor ChIP-seq Peaks of PHF21A in K562 from ENCODE 3 (ENCFF134CUM) 1 688 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of PHF21A in K562 from ENCODE 3 (ENCFF134CUM)\ parent encTfChipPk off\ shortLabel K562 PHF21A\ subGroups cellType=K562 factor=PHF21A\ track encTfChipPkENCFF134CUM\ wgEncodeCshlLongRnaSeqNhemm27012303CellTotalAlnRep1 NHMM2 cel tot A 1 bam NHEM M2 whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 688 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHEM M2 whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHMM2 cel tot A 1\ subGroups view=Alignments cellType=t3NHEMM2 localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhemm27012303CellTotalAlnRep1\ type bam\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_ctss_rev Tc:Mcf7ToHrg_00hr45minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_reverse 0 688 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep2.CNhs12654.13116-140F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13116-140F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_tpm_rev Tc:Mcf7ToHrg_00hr45minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_reverse 1 688 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep2.CNhs12654.13116-140F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13116-140F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsHaibU87NrsfPcr2xUniPk U87 REST narrowPeak U87 TFBS Uniform Peaks of NRSF from ENCODE/HudsonAlpha/Analysis 1 688 0 0 0 127 127 127 0 0 0 regulation 1 longLabel U87 TFBS Uniform Peaks of NRSF from ENCODE/HudsonAlpha/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel U87 REST\ subGroups tier=a30 cellType=U87 factor=REST lab=HudsonAlpha\ track wgEncodeAwgTfbsHaibU87NrsfPcr2xUniPk\ wgEncodeSydhTfbsGm19099Pol2IggmusSig GM99 Pol2 IgM bigWig 0.000000 13585.799805 GM19099 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 689 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM19099 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM99 Pol2 IgM\ subGroups view=Signal factor=POL2 cellType=t3GM19099 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm19099Pol2IggmusSig\ type bigWig 0.000000 13585.799805\ wgEncodeHaibTfbsH1neuronsTaf1V0422111RawRep2 H1-neu TAF1 2 bigWig 1.000000 1748.000000 H1-neurons TAF1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 689 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H1-neurons TAF1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel H1-neu TAF1 2\ subGroups view=RawSignal factor=TAF1 cellType=t2H1NEURONS protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1neuronsTaf1V0422111RawRep2\ type bigWig 1.000000 1748.000000\ encTfChipPkENCFF626KTJ K562 PHF8 narrowPeak Transcription Factor ChIP-seq Peaks of PHF8 in K562 from ENCODE 3 (ENCFF626KTJ) 1 689 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of PHF8 in K562 from ENCODE 3 (ENCFF626KTJ)\ parent encTfChipPk off\ shortLabel K562 PHF8\ subGroups cellType=K562 factor=PHF8\ track encTfChipPkENCFF626KTJ\ wgEncodeCshlLongRnaSeqNhemm270110012CellTotalAlnRep2 NHMM2 cel tot A 2 bam NHEM M2 whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 689 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHEM M2 whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHMM2 cel tot A 2\ subGroups view=Alignments cellType=t3NHEMM2 localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhemm270110012CellTotalAlnRep2\ type bam\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_ctss_fwd Tc:Mcf7ToHrg_00hr45minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_forward 0 689 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep3.CNhs12756.13182-141D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13182-141D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_tpm_fwd Tc:Mcf7ToHrg_00hr45minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_forward 1 689 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep3.CNhs12756.13182-141D5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13182-141D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsUwWerirb1CtcfUniPk WERI-Rb-1 CTCF narrowPeak WERI-Rb-1 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 689 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WERI-Rb-1 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel WERI-Rb-1 CTCF\ subGroups tier=a30 cellType=WERIRB1 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwWerirb1CtcfUniPk\ wgEncodeSydhTfbsGm19099InputIggmusSig GM99 Inpt IgM bigWig 0.000000 10618.599609 GM19099 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 690 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM19099 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM99 Inpt IgM\ subGroups view=Signal factor=ZZZINPUTIGGmus cellType=t3GM19099 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm19099InputIggmusSig\ type bigWig 0.000000 10618.599609\ wgEncodeHaibTfbsH1neuronsRxlchV0422111RawRep1 H1-neu RvXL 1 bigWig 1.000000 3057.000000 H1-neurons Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 690 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H1-neurons Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel H1-neu RvXL 1\ subGroups view=RawSignal factor=zRXLCH cellType=t2H1NEURONS protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsH1neuronsRxlchV0422111RawRep1\ type bigWig 1.000000 3057.000000\ encTfChipPkENCFF544XKC K562 PKNOX1 narrowPeak Transcription Factor ChIP-seq Peaks of PKNOX1 in K562 from ENCODE 3 (ENCFF544XKC) 1 690 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of PKNOX1 in K562 from ENCODE 3 (ENCFF544XKC)\ parent encTfChipPk off\ shortLabel K562 PKNOX1\ subGroups cellType=K562 factor=PKNOX1\ track encTfChipPkENCFF544XKC\ wgEncodeCshlLongRnaSeqNhemm2CellTotalContigs NHMM2 cel tot C bed 6 + NHEM M2 whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 690 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHEM M2 whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel NHMM2 cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3NHEMM2 localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqNhemm2CellTotalContigs\ type bed 6 +\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_ctss_rev Tc:Mcf7ToHrg_00hr45minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_reverse 0 690 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep3.CNhs12756.13182-141D5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13182-141D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_tpm_rev Tc:Mcf7ToHrg_00hr45minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_reverse 1 690 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep3.CNhs12756.13182-141D5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13182-141D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5\ urlLabel FANTOM5 Details:\ wgEncodeAwgTfbsUwWi38CtcfUniPk WI-38 CTCF narrowPeak WI-38 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis 1 690 0 0 0 127 127 127 0 0 0 regulation 1 longLabel WI-38 TFBS Uniform Peaks of CTCF from ENCODE/UW/Analysis\ parent wgEncodeAwgTfbsUniform off\ shortLabel WI-38 CTCF\ subGroups tier=a30 cellType=WI38 factor=CTCF lab=UW\ track wgEncodeAwgTfbsUwWi38CtcfUniPk\ wgEncodeSydhTfbsGm19099InputTnfaIggrabSig GM99 TNF Inpt IgR bigWig 0.000000 12792.200195 GM19099 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 691 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM19099 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM99 TNF Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t3GM19099 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm19099InputTnfaIggrabSig\ type bigWig 0.000000 12792.200195\ wgEncodeHaibTfbsH1neuronsRxlchV0422111RawRep2 H1-neu RvXL 2 bigWig 1.000000 1851.000000 H1-neurons Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 691 0 0 0 127 127 127 0 0 0 regulation 0 longLabel H1-neurons Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel H1-neu RvXL 2\ subGroups view=RawSignal factor=zRXLCH cellType=t2H1NEURONS protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsH1neuronsRxlchV0422111RawRep2\ type bigWig 1.000000 1851.000000\ encTfChipPkENCFF881QBT K562 PML narrowPeak Transcription Factor ChIP-seq Peaks of PML in K562 from ENCODE 3 (ENCFF881QBT) 1 691 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of PML in K562 from ENCODE 3 (ENCFF881QBT)\ parent encTfChipPk off\ shortLabel K562 PML\ subGroups cellType=K562 factor=PML\ track encTfChipPkENCFF881QBT\ wgEncodeCshlLongRnaSeqNhemm2CellTotalJunctions NHMM2 cel tot J bed 6 + NHEM M2 whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 691 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHEM M2 whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel NHMM2 cel tot J\ subGroups view=Junctions cellType=t3NHEMM2 localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqNhemm2CellTotalJunctions\ type bed 6 +\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_ctss_fwd Tc:Mcf7ToHrg_01hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_forward 0 691 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep1.CNhs12438.13051-139G9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13051-139G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_tpm_fwd Tc:Mcf7ToHrg_01hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_forward 1 691 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep1.CNhs12438.13051-139G9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13051-139G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsGm19193NfkbTnfaIggrabPk GM93 TNF NKB IgR narrowPeak GM19193 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH 3 692 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM19193 NFKB IgG-rab TNFa ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM93 TNF NKB IgR\ subGroups view=Peaks factor=NFKB cellType=t3GM19193 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm19193NfkbTnfaIggrabPk\ type narrowPeak\ wgEncodeHaibTfbsHelas3GabpPcr1xPkRep1 HeLa GABP PCR1 1 broadPeak HeLa-S3 GABP PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 692 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 GABP PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HeLa GABP PCR1 1\ subGroups view=Peaks factor=GABP cellType=t2HELAS3 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHelas3GabpPcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF947KPB K562 POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF947KPB) 1 692 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF947KPB)\ parent encTfChipPk off\ shortLabel K562 POLR2A 1\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF947KPB\ wgEncodeCshlLongRnaSeqNhemm27012303CellTotalMinusRep1 NHMM2 cel tot - 1 bigWig 1.000000 13177115.000000 NHEM M2 whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 692 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM M2 whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHMM2 cel tot - 1\ subGroups view=MinusSignal cellType=t3NHEMM2 localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhemm27012303CellTotalMinusRep1\ type bigWig 1.000000 13177115.000000\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_ctss_rev Tc:Mcf7ToHrg_01hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_reverse 0 692 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep1.CNhs12438.13051-139G9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13051-139G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_tpm_rev Tc:Mcf7ToHrg_01hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_reverse 1 692 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep1.CNhs12438.13051-139G9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13051-139G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsGm19193NfkbTnfaIggrabSig GM93 TNF NKB IgR bigWig 0.000000 7953.299805 GM19193 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 693 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM19193 NFKB IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM93 TNF NKB IgR\ subGroups view=Signal factor=NFKB cellType=t3GM19193 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm19193NfkbTnfaIggrabSig\ type bigWig 0.000000 7953.299805\ wgEncodeHaibTfbsHelas3GabpPcr1xRawRep1 HeLa GABP PCR1 1 bigWig 0.175992 192.886993 HeLa-S3 GABP PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 693 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 GABP PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HeLa GABP PCR1 1\ subGroups view=RawSignal factor=GABP cellType=t2HELAS3 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHelas3GabpPcr1xRawRep1\ type bigWig 0.175992 192.886993\ encTfChipPkENCFF206YXX K562 POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF206YXX) 1 693 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF206YXX)\ parent encTfChipPk off\ shortLabel K562 POLR2A 2\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF206YXX\ wgEncodeCshlLongRnaSeqNhemm270110012CellTotalMinusRep2 NHMM2 cel tot - 2 bigWig 1.000000 15766267.000000 NHEM M2 whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 693 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM M2 whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHMM2 cel tot - 2\ subGroups view=MinusSignal cellType=t3NHEMM2 localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhemm270110012CellTotalMinusRep2\ type bigWig 1.000000 15766267.000000\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_ctss_fwd Tc:Mcf7ToHrg_01hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_forward 0 693 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep2.CNhs12655.13117-140F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13117-140F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_tpm_fwd Tc:Mcf7ToHrg_01hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_forward 1 693 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep2.CNhs12655.13117-140F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13117-140F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsGm19193Pol2IggmusPk GM93 Pol2 IgM narrowPeak GM19193 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH 3 694 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM19193 Pol2 IgG-mus ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel GM93 Pol2 IgM\ subGroups view=Peaks factor=POL2 cellType=t3GM19193 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm19193Pol2IggmusPk\ type narrowPeak\ wgEncodeHaibTfbsHelas3GabpPcr1xPkRep2 HeLa GABP PCR1 2 broadPeak HeLa-S3 GABP PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 694 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 GABP PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HeLa GABP PCR1 2\ subGroups view=Peaks factor=GABP cellType=t2HELAS3 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHelas3GabpPcr1xPkRep2\ type broadPeak\ encTfChipPkENCFF394LOQ K562 POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF394LOQ) 1 694 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF394LOQ)\ parent encTfChipPk off\ shortLabel K562 POLR2A 3\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF394LOQ\ wgEncodeCshlLongRnaSeqNhemm27012303CellTotalPlusRep1 NHMM2 cel tot + 1 bigWig 1.000000 13176416.000000 NHEM M2 whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 694 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM M2 whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHMM2 cel tot + 1\ subGroups view=PlusSignal cellType=t3NHEMM2 localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhemm27012303CellTotalPlusRep1\ type bigWig 1.000000 13176416.000000\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_ctss_rev Tc:Mcf7ToHrg_01hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_reverse 0 694 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep2.CNhs12655.13117-140F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13117-140F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_tpm_rev Tc:Mcf7ToHrg_01hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_reverse 1 694 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep2.CNhs12655.13117-140F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13117-140F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsGm19193Pol2IggmusSig GM93 Pol2 IgM bigWig 0.000000 11612.200195 GM19193 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 695 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM19193 Pol2 IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM93 Pol2 IgM\ subGroups view=Signal factor=POL2 cellType=t3GM19193 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm19193Pol2IggmusSig\ type bigWig 0.000000 11612.200195\ wgEncodeHaibTfbsHelas3GabpPcr1xRawRep2 HeLa GABP PCR1 2 bigWig 0.144089 175.716995 HeLa-S3 GABP PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 695 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 GABP PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HeLa GABP PCR1 2\ subGroups view=RawSignal factor=GABP cellType=t2HELAS3 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHelas3GabpPcr1xRawRep2\ type bigWig 0.144089 175.716995\ encTfChipPkENCFF248IWJ K562 POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF248IWJ) 1 695 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF248IWJ)\ parent encTfChipPk off\ shortLabel K562 POLR2A 4\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF248IWJ\ wgEncodeCshlLongRnaSeqNhemm270110012CellTotalPlusRep2 NHMM2 cel tot + 2 bigWig 1.000000 10995237.000000 NHEM M2 whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 695 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHEM M2 whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHMM2 cel tot + 2\ subGroups view=PlusSignal cellType=t3NHEMM2 localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhemm270110012CellTotalPlusRep2\ type bigWig 1.000000 10995237.000000\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_ctss_fwd Tc:Mcf7ToHrg_01hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_forward 0 695 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep3.CNhs12757.13183-141D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13183-141D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_tpm_fwd Tc:Mcf7ToHrg_01hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_forward 1 695 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep3.CNhs12757.13183-141D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13183-141D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsGm19193InputIggmusSig GM93 Inpt IgM bigWig 0.000000 9534.299805 GM19193 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH 2 696 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM19193 Input IgG-mus ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM93 Inpt IgM\ subGroups view=Signal factor=ZZZINPUTIGGmus cellType=t3GM19193 control=IGGMUS treatment=aNONE\ track wgEncodeSydhTfbsGm19193InputIggmusSig\ type bigWig 0.000000 9534.299805\ wgEncodeHaibTfbsHelas3NrsfPcr1xPkRep1 HeLa NRSF PCR1 1 broadPeak HeLa-S3 NRSF PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 696 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 NRSF PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HeLa NRSF PCR1 1\ subGroups view=Peaks factor=NRSF cellType=t2HELAS3 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHelas3NrsfPcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF662YQK K562 POLR2A 5 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF662YQK) 1 696 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF662YQK)\ parent encTfChipPk off\ shortLabel K562 POLR2A 5\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF662YQK\ wgEncodeCshlLongRnaSeqNhlfCellLongnonpolyaAlnRep1 NHLF cel pA- A 1 bam NHLF whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 696 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHLF whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHLF cel pA- A 1\ subGroups view=Alignments cellType=t3NHLF localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhlfCellLongnonpolyaAlnRep1\ type bam\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_ctss_rev Tc:Mcf7ToHrg_01hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_reverse 0 696 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep3.CNhs12757.13183-141D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13183-141D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_tpm_rev Tc:Mcf7ToHrg_01hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_reverse 1 696 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep3.CNhs12757.13183-141D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13183-141D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsGm19193InputTnfaIggrabSig GM93 TNF Inpt IgR bigWig 0.000000 8317.400391 GM19193 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH 2 697 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM19193 Input IgG-rab TNFa ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel GM93 TNF Inpt IgR\ subGroups view=Signal factor=ZZZINPUTIGGrab cellType=t3GM19193 control=IGGRAB treatment=TNFa\ track wgEncodeSydhTfbsGm19193InputTnfaIggrabSig\ type bigWig 0.000000 8317.400391\ wgEncodeHaibTfbsHelas3NrsfPcr1xRawRep1 HeLa NRSF PCR1 1 bigWig 0.318643 515.086975 HeLa-S3 NRSF PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 697 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 NRSF PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HeLa NRSF PCR1 1\ subGroups view=RawSignal factor=NRSF cellType=t2HELAS3 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHelas3NrsfPcr1xRawRep1\ type bigWig 0.318643 515.086975\ encTfChipPkENCFF270QAB K562 POLR2A 6 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF270QAB) 1 697 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF270QAB)\ parent encTfChipPk off\ shortLabel K562 POLR2A 6\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF270QAB\ wgEncodeCshlLongRnaSeqNhlfCellLongnonpolyaAlnRep2 NHLF cel pA- A 2 bam NHLF whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 697 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHLF whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHLF cel pA- A 2\ subGroups view=Alignments cellType=t3NHLF localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhlfCellLongnonpolyaAlnRep2\ type bam\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_ctss_fwd Tc:Mcf7ToHrg_01hr20minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_forward 0 697 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep1.CNhs12439.13052-139H1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13052-139H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_tpm_fwd Tc:Mcf7ToHrg_01hr20minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_forward 1 697 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep1.CNhs12439.13052-139H1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13052-139H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHct116Pol2UcdPk HCT Pol2 UCD narrowPeak HCT-116 Pol2 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 698 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 Pol2 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HCT Pol2 UCD\ subGroups view=Peaks factor=POL2 cellType=t3HCT116 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHct116Pol2UcdPk\ type narrowPeak\ wgEncodeHaibTfbsHelas3NrsfPcr1xPkRep2 HeLa NRSF PCR1 2 broadPeak HeLa-S3 NRSF PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 698 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 NRSF PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HeLa NRSF PCR1 2\ subGroups view=Peaks factor=NRSF cellType=t2HELAS3 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHelas3NrsfPcr1xPkRep2\ type broadPeak\ encTfChipPkENCFF937VZI K562 POLR2A 7 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF937VZI) 1 698 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF937VZI)\ parent encTfChipPk off\ shortLabel K562 POLR2A 7\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF937VZI\ wgEncodeCshlLongRnaSeqNhlfCellPamContigs NHLF cel pA- C bed 6 + NHLF whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 698 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHLF whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel NHLF cel pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3NHLF localization=CELL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqNhlfCellPamContigs\ type bed 6 +\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_ctss_rev Tc:Mcf7ToHrg_01hr20minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_reverse 0 698 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep1.CNhs12439.13052-139H1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13052-139H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_tpm_rev Tc:Mcf7ToHrg_01hr20minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_reverse 1 698 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep1.CNhs12439.13052-139H1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13052-139H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHct116Pol2UcdSig HCT Pol2 UCD bigWig 0.000000 12339.400391 HCT-116 Pol2 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 699 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 Pol2 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HCT Pol2 UCD\ subGroups view=Signal factor=POL2 cellType=t3HCT116 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHct116Pol2UcdSig\ type bigWig 0.000000 12339.400391\ wgEncodeHaibTfbsHelas3NrsfPcr1xRawRep2 HeLa NRSF PCR1 2 bigWig 0.258329 274.798004 HeLa-S3 NRSF PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 699 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 NRSF PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HeLa NRSF PCR1 2\ subGroups view=RawSignal factor=NRSF cellType=t2HELAS3 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHelas3NrsfPcr1xRawRep2\ type bigWig 0.258329 274.798004\ encTfChipPkENCFF853ZMA K562 POLR2A 8 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF853ZMA) 1 699 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF853ZMA)\ parent encTfChipPk off\ shortLabel K562 POLR2A 8\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF853ZMA\ wgEncodeCshlLongRnaSeqNhlfCellPamJunctions NHLF cel pA- J bed 6 + NHLF whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 699 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHLF whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel NHLF cel pA- J\ subGroups view=Junctions cellType=t3NHLF localization=CELL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqNhlfCellPamJunctions\ type bed 6 +\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_ctss_fwd Tc:Mcf7ToHrg_01hr20minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_forward 0 699 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep2.CNhs12656.13118-140F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13118-140F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_tpm_fwd Tc:Mcf7ToHrg_01hr20minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_forward 1 699 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep2.CNhs12656.13118-140F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13118-140F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHct116Tcf7l2UcdPk HCT TCF7L2 UCD narrowPeak HCT-116 TCF7L2 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 700 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 TCF7L2 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HCT TCF7L2 UCD\ subGroups view=Peaks factor=TCF7L2 cellType=t3HCT116 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHct116Tcf7l2UcdPk\ type narrowPeak\ wgEncodeHaibTfbsHelas3Pol2Pcr1xPkRep1 HeLa Pol2 PCR1 1 broadPeak HeLa-S3 Pol2 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 700 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 Pol2 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HeLa Pol2 PCR1 1\ subGroups view=Peaks factor=POL2 cellType=t2HELAS3 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHelas3Pol2Pcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF273EYJ K562 POLR2G narrowPeak Transcription Factor ChIP-seq Peaks of POLR2G in K562 from ENCODE 3 (ENCFF273EYJ) 1 700 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of POLR2G in K562 from ENCODE 3 (ENCFF273EYJ)\ parent encTfChipPk off\ shortLabel K562 POLR2G\ subGroups cellType=K562 factor=POLR2G\ track encTfChipPkENCFF273EYJ\ wgEncodeCshlLongRnaSeqNhlfCellLongnonpolyaMinusRawSigRep1 NHLF cel pA- - 1 bigWig 1.000000 4165964.000000 NHLF whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 700 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHLF whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHLF cel pA- - 1\ subGroups view=MinusSignal cellType=t3NHLF localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhlfCellLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 4165964.000000\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_ctss_rev Tc:Mcf7ToHrg_01hr20minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_reverse 0 700 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep2.CNhs12656.13118-140F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13118-140F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_tpm_rev Tc:Mcf7ToHrg_01hr20minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_reverse 1 700 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep2.CNhs12656.13118-140F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13118-140F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHct116Tcf7l2UcdSig HCT TCF7L2 UCD bigWig 0.000000 8673.700195 HCT-116 TCF7L2 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 701 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 TCF7L2 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HCT TCF7L2 UCD\ subGroups view=Signal factor=TCF7L2 cellType=t3HCT116 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHct116Tcf7l2UcdSig\ type bigWig 0.000000 8673.700195\ wgEncodeHaibTfbsHelas3Pol2Pcr1xRawRep1 HeLa Pol2 PCR1 1 bigWig 0.134466 364.804993 HeLa-S3 Pol2 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 701 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Pol2 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HeLa Pol2 PCR1 1\ subGroups view=RawSignal factor=POL2 cellType=t2HELAS3 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHelas3Pol2Pcr1xRawRep1\ type bigWig 0.134466 364.804993\ encTfChipPkENCFF294HEI K562 PRDM10 narrowPeak Transcription Factor ChIP-seq Peaks of PRDM10 in K562 from ENCODE 3 (ENCFF294HEI) 1 701 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of PRDM10 in K562 from ENCODE 3 (ENCFF294HEI)\ parent encTfChipPk off\ shortLabel K562 PRDM10\ subGroups cellType=K562 factor=PRDM10\ track encTfChipPkENCFF294HEI\ wgEncodeCshlLongRnaSeqNhlfCellLongnonpolyaMinusRawSigRep2 NHLF cel pA- - 2 bigWig 1.000000 2777457.000000 NHLF whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 701 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHLF whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHLF cel pA- - 2\ subGroups view=MinusSignal cellType=t3NHLF localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhlfCellLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 2777457.000000\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_ctss_fwd Tc:Mcf7ToHrg_01hr20minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_forward 0 701 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep3.CNhs12758.13184-141D7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13184-141D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_tpm_fwd Tc:Mcf7ToHrg_01hr20minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_forward 1 701 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep3.CNhs12758.13184-141D7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13184-141D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHct116InputUcdSig HCT Inpt UCD bigWig 0.000000 10692.400391 HCT-116 Input UC Davis ChIP-seq Signal from ENCODE/SYDH 2 702 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 Input UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HCT Inpt UCD\ subGroups view=Signal factor=ZZZINPUTUCD cellType=t3HCT116 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHct116InputUcdSig\ type bigWig 0.000000 10692.400391\ wgEncodeHaibTfbsHelas3Pol2Pcr1xPkRep2 HeLa Pol2 PCR1 2 broadPeak HeLa-S3 Pol2 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 702 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 Pol2 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HeLa Pol2 PCR1 2\ subGroups view=Peaks factor=POL2 cellType=t2HELAS3 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHelas3Pol2Pcr1xPkRep2\ type broadPeak\ encTfChipPkENCFF785ACI K562 PRPF4 narrowPeak Transcription Factor ChIP-seq Peaks of PRPF4 in K562 from ENCODE 3 (ENCFF785ACI) 1 702 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of PRPF4 in K562 from ENCODE 3 (ENCFF785ACI)\ parent encTfChipPk off\ shortLabel K562 PRPF4\ subGroups cellType=K562 factor=PRPF4\ track encTfChipPkENCFF785ACI\ wgEncodeCshlLongRnaSeqNhlfCellLongnonpolyaPlusRawSigRep1 NHLF cel pA- + 1 bigWig 1.000000 5593257.000000 NHLF whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 702 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHLF whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHLF cel pA- + 1\ subGroups view=PlusSignal cellType=t3NHLF localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhlfCellLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 5593257.000000\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_ctss_rev Tc:Mcf7ToHrg_01hr20minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_reverse 0 702 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep3.CNhs12758.13184-141D7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13184-141D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_tpm_rev Tc:Mcf7ToHrg_01hr20minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_reverse 1 702 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep3.CNhs12758.13184-141D7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13184-141D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHek293Elk4UcdPk HEK2 ELK4 UCD narrowPeak HEK293 ELK4 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 703 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 ELK4 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEK2 ELK4 UCD\ subGroups view=Peaks factor=ELK4 cellType=t3HEK293 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHek293Elk4UcdPk\ type narrowPeak\ wgEncodeHaibTfbsHelas3Pol2Pcr1xRawRep2 HeLa Pol2 PCR1 2 bigWig 0.119137 540.343994 HeLa-S3 Pol2 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 703 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Pol2 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HeLa Pol2 PCR1 2\ subGroups view=RawSignal factor=POL2 cellType=t2HELAS3 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHelas3Pol2Pcr1xRawRep2\ type bigWig 0.119137 540.343994\ encTfChipPkENCFF694BIA K562 PTBP1 narrowPeak Transcription Factor ChIP-seq Peaks of PTBP1 in K562 from ENCODE 3 (ENCFF694BIA) 1 703 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of PTBP1 in K562 from ENCODE 3 (ENCFF694BIA)\ parent encTfChipPk off\ shortLabel K562 PTBP1\ subGroups cellType=K562 factor=PTBP1\ track encTfChipPkENCFF694BIA\ wgEncodeCshlLongRnaSeqNhlfCellLongnonpolyaPlusRawSigRep2 NHLF cel pA- + 2 bigWig 1.000000 3533679.000000 NHLF whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 703 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHLF whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHLF cel pA- + 2\ subGroups view=PlusSignal cellType=t3NHLF localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhlfCellLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 3533679.000000\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_ctss_fwd Tc:Mcf7ToHrg_01hr40minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_forward 0 703 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep1.CNhs12440.13053-139H2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13053-139H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_tpm_fwd Tc:Mcf7ToHrg_01hr40minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_forward 1 703 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep1.CNhs12440.13053-139H2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13053-139H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHek293Elk4UcdSig HEK2 ELK4 UCD bigWig 1.000000 27993.000000 HEK293 ELK4 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 704 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEK293 ELK4 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEK2 ELK4 UCD\ subGroups view=Signal factor=ELK4 cellType=t3HEK293 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHek293Elk4UcdSig\ type bigWig 1.000000 27993.000000\ wgEncodeHaibTfbsHelas3Taf1Pcr1xPkRep1 HeLa TAF1 PCR1 1 broadPeak HeLa-S3 TAF1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 704 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TAF1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HeLa TAF1 PCR1 1\ subGroups view=Peaks factor=TAF1 cellType=t2HELAS3 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHelas3Taf1Pcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF421KIV K562 PYGO2 narrowPeak Transcription Factor ChIP-seq Peaks of PYGO2 in K562 from ENCODE 3 (ENCFF421KIV) 1 704 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of PYGO2 in K562 from ENCODE 3 (ENCFF421KIV)\ parent encTfChipPk off\ shortLabel K562 PYGO2\ subGroups cellType=K562 factor=PYGO2\ track encTfChipPkENCFF421KIV\ wgEncodeCshlLongRnaSeqNhlfCellPapAlnRep1 NHLF cel pA+ A 1 bam NHLF whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 704 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHLF whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHLF cel pA+ A 1\ subGroups view=Alignments cellType=t3NHLF localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhlfCellPapAlnRep1\ type bam\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_ctss_rev Tc:Mcf7ToHrg_01hr40minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_reverse 0 704 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep1.CNhs12440.13053-139H2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13053-139H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_tpm_rev Tc:Mcf7ToHrg_01hr40minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_reverse 1 704 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep1.CNhs12440.13053-139H2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13053-139H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHek293Kap1UcdPk HEK2 KAP1 UCD narrowPeak HEK293 KAP1 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 705 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 KAP1 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEK2 KAP1 UCD\ subGroups view=Peaks factor=KAP1 cellType=t3HEK293 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHek293Kap1UcdPk\ type narrowPeak\ wgEncodeHaibTfbsHelas3Taf1Pcr1xRawRep1 HeLa TAF1 PCR1 1 bigWig 0.142050 218.367004 HeLa-S3 TAF1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 705 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 TAF1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HeLa TAF1 PCR1 1\ subGroups view=RawSignal factor=TAF1 cellType=t2HELAS3 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHelas3Taf1Pcr1xRawRep1\ type bigWig 0.142050 218.367004\ encTfChipPkENCFF096XMD K562 RAD51 narrowPeak Transcription Factor ChIP-seq Peaks of RAD51 in K562 from ENCODE 3 (ENCFF096XMD) 1 705 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RAD51 in K562 from ENCODE 3 (ENCFF096XMD)\ parent encTfChipPk off\ shortLabel K562 RAD51\ subGroups cellType=K562 factor=RAD51\ track encTfChipPkENCFF096XMD\ wgEncodeCshlLongRnaSeqNhlfCellPapAlnRep2 NHLF cel pA+ A 2 bam NHLF whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 705 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHLF whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel NHLF cel pA+ A 2\ subGroups view=Alignments cellType=t3NHLF localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhlfCellPapAlnRep2\ type bam\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_ctss_fwd Tc:Mcf7ToHrg_01hr40minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_forward 0 705 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep2.CNhs12657.13119-140F5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13119-140F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_tpm_fwd Tc:Mcf7ToHrg_01hr40minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_forward 1 705 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep2.CNhs12657.13119-140F5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13119-140F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHek293Kap1UcdSig HEK2 KAP1 UCD bigWig 1.000000 36955.000000 HEK293 KAP1 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 706 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEK293 KAP1 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEK2 KAP1 UCD\ subGroups view=Signal factor=KAP1 cellType=t3HEK293 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHek293Kap1UcdSig\ type bigWig 1.000000 36955.000000\ wgEncodeHaibTfbsHelas3Taf1Pcr1xPkRep2 HeLa TAF1 PCR1 2 broadPeak HeLa-S3 TAF1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 706 0 119 158 127 187 206 0 0 0 regulation 1 color 0,119,158\ longLabel HeLa-S3 TAF1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HeLa TAF1 PCR1 2\ subGroups view=Peaks factor=TAF1 cellType=t2HELAS3 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHelas3Taf1Pcr1xPkRep2\ type broadPeak\ encTfChipPkENCFF975IRM K562 RB1 narrowPeak Transcription Factor ChIP-seq Peaks of RB1 in K562 from ENCODE 3 (ENCFF975IRM) 1 706 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RB1 in K562 from ENCODE 3 (ENCFF975IRM)\ parent encTfChipPk off\ shortLabel K562 RB1\ subGroups cellType=K562 factor=RB1\ track encTfChipPkENCFF975IRM\ wgEncodeCshlLongRnaSeqNhlfCellPapContigs NHLF cel pA+ C bed 6 + NHLF whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 706 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHLF whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel NHLF cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3NHLF localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqNhlfCellPapContigs\ type bed 6 +\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_ctss_rev Tc:Mcf7ToHrg_01hr40minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_reverse 0 706 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep2.CNhs12657.13119-140F5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13119-140F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_tpm_rev Tc:Mcf7ToHrg_01hr40minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_reverse 1 706 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep2.CNhs12657.13119-140F5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13119-140F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHek293Pol2StdPk HEK2 Pol2 Std narrowPeak HEK293 Pol2 Standard ChIP-seq Peaks from ENCODE/SYDH 3 707 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 Pol2 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEK2 Pol2 Std\ subGroups view=Peaks factor=POL2 cellType=t3HEK293 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHek293Pol2StdPk\ type narrowPeak\ wgEncodeHaibTfbsHelas3Taf1Pcr1xRawRep2 HeLa TAF1 PCR1 2 bigWig 0.244059 163.031006 HeLa-S3 TAF1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 707 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 TAF1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HeLa TAF1 PCR1 2\ subGroups view=RawSignal factor=TAF1 cellType=t2HELAS3 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHelas3Taf1Pcr1xRawRep2\ type bigWig 0.244059 163.031006\ encTfChipPkENCFF379MPS K562 RBBP5 narrowPeak Transcription Factor ChIP-seq Peaks of RBBP5 in K562 from ENCODE 3 (ENCFF379MPS) 1 707 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RBBP5 in K562 from ENCODE 3 (ENCFF379MPS)\ parent encTfChipPk off\ shortLabel K562 RBBP5\ subGroups cellType=K562 factor=RBBP5\ track encTfChipPkENCFF379MPS\ wgEncodeCshlLongRnaSeqNhlfCellPapJunctions NHLF cel pA+ J bed 6 + NHLF whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 707 0 0 0 127 127 127 0 0 0 expression 1 longLabel NHLF whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel NHLF cel pA+ J\ subGroups view=Junctions cellType=t3NHLF localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqNhlfCellPapJunctions\ type bed 6 +\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_ctss_fwd Tc:Mcf7ToHrg_01hr40minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_forward 0 707 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep3.CNhs12759.13185-141D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13185-141D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_tpm_fwd Tc:Mcf7ToHrg_01hr40minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_forward 1 707 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep3.CNhs12759.13185-141D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13185-141D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHek293Pol2StdSig HEK2 Pol2 Std bigWig 0.000000 15799.599609 HEK293 Pol2 Standard ChIP-seq Signal from ENCODE/SYDH 2 708 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEK293 Pol2 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEK2 Pol2 Std\ subGroups view=Signal factor=POL2 cellType=t3HEK293 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHek293Pol2StdSig\ type bigWig 0.000000 15799.599609\ wgEncodeHaibTfbsHelas3RxlchPcr1xRawRep1 HeLa RvXL PCR1 1 bigWig 0.097920 281.152008 HeLa-S3 Control PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 708 0 119 158 127 187 206 0 0 0 regulation 0 color 0,119,158\ longLabel HeLa-S3 Control PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HeLa RvXL PCR1 1\ subGroups view=RawSignal factor=zRXLCH cellType=t2HELAS3 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHelas3RxlchPcr1xRawRep1\ type bigWig 0.097920 281.152008\ encTfChipPkENCFF120IDE K562 RBFOX2 narrowPeak Transcription Factor ChIP-seq Peaks of RBFOX2 in K562 from ENCODE 3 (ENCFF120IDE) 1 708 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RBFOX2 in K562 from ENCODE 3 (ENCFF120IDE)\ parent encTfChipPk off\ shortLabel K562 RBFOX2\ subGroups cellType=K562 factor=RBFOX2\ track encTfChipPkENCFF120IDE\ wgEncodeCshlLongRnaSeqNhlfCellPapMinusRawSigRep1 NHLF cel pA+ - 1 bigWig 1.000000 370794.000000 NHLF whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 708 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHLF whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHLF cel pA+ - 1\ subGroups view=MinusSignal cellType=t3NHLF localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhlfCellPapMinusRawSigRep1\ type bigWig 1.000000 370794.000000\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_ctss_rev Tc:Mcf7ToHrg_01hr40minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_reverse 0 708 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep3.CNhs12759.13185-141D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13185-141D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_tpm_rev Tc:Mcf7ToHrg_01hr40minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_reverse 1 708 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep3.CNhs12759.13185-141D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13185-141D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHek293Tcf7l2UcdPk HEK2 TCF7L2 UCD narrowPeak HEK293 TCF7L2 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 709 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293 TCF7L2 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEK2 TCF7L2 UCD\ subGroups view=Peaks factor=TCF7L2 cellType=t3HEK293 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHek293Tcf7l2UcdPk\ type narrowPeak\ wgEncodeHaibTfbsHepg2Atf3V0416101PkRep1 HepG ATF3 V101 1 broadPeak HepG2 ATF3 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 709 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 ATF3 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG ATF3 V101 1\ subGroups view=Peaks factor=ATF3 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Atf3V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF682SIY K562 RBM14 narrowPeak Transcription Factor ChIP-seq Peaks of RBM14 in K562 from ENCODE 3 (ENCFF682SIY) 1 709 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RBM14 in K562 from ENCODE 3 (ENCFF682SIY)\ parent encTfChipPk off\ shortLabel K562 RBM14\ subGroups cellType=K562 factor=RBM14\ track encTfChipPkENCFF682SIY\ wgEncodeCshlLongRnaSeqNhlfCellPapMinusRawSigRep2 NHLF cel pA+ - 2 bigWig 1.000000 460058.000000 NHLF whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 709 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHLF whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel NHLF cel pA+ - 2\ subGroups view=MinusSignal cellType=t3NHLF localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhlfCellPapMinusRawSigRep2\ type bigWig 1.000000 460058.000000\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_ctss_fwd Tc:Mcf7ToHrg_02hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_forward 0 709 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep1.CNhs12441.13054-139H3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13054-139H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_tpm_fwd Tc:Mcf7ToHrg_02hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_forward 1 709 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep1.CNhs12441.13054-139H3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13054-139H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHek293Tcf7l2UcdSig HEK2 TCF7L2 UCD bigWig 1.000000 18167.000000 HEK293 TCF7L2 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 710 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEK293 TCF7L2 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEK2 TCF7L2 UCD\ subGroups view=Signal factor=TCF7L2 cellType=t3HEK293 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHek293Tcf7l2UcdSig\ type bigWig 1.000000 18167.000000\ wgEncodeHaibTfbsHepg2Atf3V0416101RawRep1 HepG ATF3 V101 1 bigWig 0.206589 244.757004 HepG2 ATF3 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 710 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 ATF3 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG ATF3 V101 1\ subGroups view=RawSignal factor=ATF3 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Atf3V0416101RawRep1\ type bigWig 0.206589 244.757004\ encTfChipPkENCFF971VJZ K562 RBM15 narrowPeak Transcription Factor ChIP-seq Peaks of RBM15 in K562 from ENCODE 3 (ENCFF971VJZ) 1 710 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RBM15 in K562 from ENCODE 3 (ENCFF971VJZ)\ parent encTfChipPk off\ shortLabel K562 RBM15\ subGroups cellType=K562 factor=RBM15\ track encTfChipPkENCFF971VJZ\ wgEncodeCshlLongRnaSeqNhlfCellPapPlusRawSigRep1 NHLF cel pA+ + 1 bigWig 1.000000 416153.000000 NHLF whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 710 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHLF whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHLF cel pA+ + 1\ subGroups view=PlusSignal cellType=t3NHLF localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqNhlfCellPapPlusRawSigRep1\ type bigWig 1.000000 416153.000000\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_ctss_rev Tc:Mcf7ToHrg_02hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_reverse 0 710 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep1.CNhs12441.13054-139H3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13054-139H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_tpm_rev Tc:Mcf7ToHrg_02hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_reverse 1 710 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep1.CNhs12441.13054-139H3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13054-139H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHek293InputStdSig HEK2 Inpt Std bigWig 0.000000 9335.299805 HEK293 Input Standard ChIP-seq Signal from ENCODE/SYDH 2 711 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEK293 Input Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEK2 Inpt Std\ subGroups view=Signal factor=ZZZINPUTSTD cellType=t3HEK293 control=STD treatment=aNONE\ track wgEncodeSydhTfbsHek293InputStdSig\ type bigWig 0.000000 9335.299805\ wgEncodeHaibTfbsHepg2Atf3V0416101PkRep2 HepG ATF3 V101 2 broadPeak HepG2 ATF3 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 711 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 ATF3 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG ATF3 V101 2\ subGroups view=Peaks factor=ATF3 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Atf3V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF861YKK K562 RBM17 narrowPeak Transcription Factor ChIP-seq Peaks of RBM17 in K562 from ENCODE 3 (ENCFF861YKK) 1 711 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RBM17 in K562 from ENCODE 3 (ENCFF861YKK)\ parent encTfChipPk off\ shortLabel K562 RBM17\ subGroups cellType=K562 factor=RBM17\ track encTfChipPkENCFF861YKK\ wgEncodeCshlLongRnaSeqNhlfCellPapPlusRawSigRep2 NHLF cel pA+ + 2 bigWig 1.000000 479716.000000 NHLF whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 711 0 0 0 127 127 127 0 0 0 expression 0 longLabel NHLF whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel NHLF cel pA+ + 2\ subGroups view=PlusSignal cellType=t3NHLF localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqNhlfCellPapPlusRawSigRep2\ type bigWig 1.000000 479716.000000\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_ctss_fwd Tc:Mcf7ToHrg_02hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_forward 0 711 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep2.CNhs12658.13120-140F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13120-140F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_tpm_fwd Tc:Mcf7ToHrg_02hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_forward 1 711 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep2.CNhs12658.13120-140F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13120-140F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHek293InputUcdSig HEK2 Inpt UCD bigWig 1.000000 24948.000000 HEK293 Input UC Davis ChIP-seq Signal from ENCODE/SYDH 2 712 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEK293 Input UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEK2 Inpt UCD\ subGroups view=Signal factor=ZZZINPUTUCD cellType=t3HEK293 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHek293InputUcdSig\ type bigWig 1.000000 24948.000000\ wgEncodeHaibTfbsHepg2Atf3V0416101RawRep2 HepG ATF3 V101 2 bigWig 0.165543 146.257004 HepG2 ATF3 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 712 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 ATF3 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG ATF3 V101 2\ subGroups view=RawSignal factor=ATF3 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Atf3V0416101RawRep2\ type bigWig 0.165543 146.257004\ encTfChipPkENCFF522JUV K562 RBM22 narrowPeak Transcription Factor ChIP-seq Peaks of RBM22 in K562 from ENCODE 3 (ENCFF522JUV) 1 712 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RBM22 in K562 from ENCODE 3 (ENCFF522JUV)\ parent encTfChipPk off\ shortLabel K562 RBM22\ subGroups cellType=K562 factor=RBM22\ track encTfChipPkENCFF522JUV\ wgEncodeCshlLongRnaSeqSkmc9011302CellTotalAlnRep1 SkMC cel tot A 1 bam SkMC whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 712 0 0 0 127 127 127 0 0 0 expression 1 longLabel SkMC whole cell total RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel SkMC cel tot A 1\ subGroups view=Alignments cellType=t3SKMC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqSkmc9011302CellTotalAlnRep1\ type bam\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_ctss_rev Tc:Mcf7ToHrg_02hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_reverse 0 712 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep2.CNhs12658.13120-140F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13120-140F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_tpm_rev Tc:Mcf7ToHrg_02hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_reverse 1 712 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep2.CNhs12658.13120-140F6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13120-140F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHek293tZnf263UcdPk HEKT Z263 UCD narrowPeak HEK293-T-REx ZNF263 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 713 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HEK293-T-REx ZNF263 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel HEKT Z263 UCD\ subGroups view=Peaks factor=ZNF263 cellType=t3HEK293TREX control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHek293tZnf263UcdPk\ type narrowPeak\ wgEncodeHaibTfbsHepg2Bhlhe40V0416101PkRep1 HepG BHLHE40 1 broadPeak HepG2 BHLHE40 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 713 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 BHLHE40 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG BHLHE40 1\ subGroups view=Peaks factor=BHLHE40 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Bhlhe40V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF680WBN K562 RBM25 narrowPeak Transcription Factor ChIP-seq Peaks of RBM25 in K562 from ENCODE 3 (ENCFF680WBN) 1 713 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RBM25 in K562 from ENCODE 3 (ENCFF680WBN)\ parent encTfChipPk off\ shortLabel K562 RBM25\ subGroups cellType=K562 factor=RBM25\ track encTfChipPkENCFF680WBN\ wgEncodeCshlLongRnaSeqSkmc812190217CellTotalAlnRep2 SkMC cel tot A 2 bam SkMC whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 713 0 0 0 127 127 127 0 0 0 expression 1 longLabel SkMC whole cell total RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel SkMC cel tot A 2\ subGroups view=Alignments cellType=t3SKMC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqSkmc812190217CellTotalAlnRep2\ type bam\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_ctss_fwd Tc:Mcf7ToHrg_02hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_forward 0 713 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep3.CNhs12760.13186-141D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13186-141D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_tpm_fwd Tc:Mcf7ToHrg_02hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_forward 1 713 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep3.CNhs12760.13186-141D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13186-141D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHek293tZnf263UcdSig HEKT Z263 UCD bigWig 1.000000 10229.000000 HEK293-T-REx ZNF263 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 714 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEK293-T-REx ZNF263 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEKT Z263 UCD\ subGroups view=Signal factor=ZNF263 cellType=t3HEK293TREX control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHek293tZnf263UcdSig\ type bigWig 1.000000 10229.000000\ wgEncodeHaibTfbsHepg2Bhlhe40V0416101RawRep1 HepG BHLHE40 1 bigWig 0.154140 285.968994 HepG2 BHLHE40 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 714 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 BHLHE40 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG BHLHE40 1\ subGroups view=RawSignal factor=BHLHE40 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Bhlhe40V0416101RawRep1\ type bigWig 0.154140 285.968994\ encTfChipPkENCFF782GWS K562 RBM34 narrowPeak Transcription Factor ChIP-seq Peaks of RBM34 in K562 from ENCODE 3 (ENCFF782GWS) 1 714 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RBM34 in K562 from ENCODE 3 (ENCFF782GWS)\ parent encTfChipPk off\ shortLabel K562 RBM34\ subGroups cellType=K562 factor=RBM34\ track encTfChipPkENCFF782GWS\ wgEncodeCshlLongRnaSeqSkmcCellTotalContigs SkMC cel tot C bed 6 + SkMC whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL 3 714 0 0 0 127 127 127 0 0 0 expression 1 longLabel SkMC whole cell total RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel SkMC cel tot C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3SKMC localization=CELL rnaExtract=TOTAL\ track wgEncodeCshlLongRnaSeqSkmcCellTotalContigs\ type bed 6 +\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_ctss_rev Tc:Mcf7ToHrg_02hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_reverse 0 714 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep3.CNhs12760.13186-141D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13186-141D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_tpm_rev Tc:Mcf7ToHrg_02hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_reverse 1 714 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep3.CNhs12760.13186-141D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13186-141D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsHek293tInputUcdSig HEKT Inpt UCD bigWig 1.000000 27995.000000 HEK293-T-REx Input UC Davis ChIP-seq Signal from ENCODE/SYDH 2 715 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HEK293-T-REx Input UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel HEKT Inpt UCD\ subGroups view=Signal factor=ZZZINPUTUCD cellType=t3HEK293TREX control=UCD treatment=aNONE\ track wgEncodeSydhTfbsHek293tInputUcdSig\ type bigWig 1.000000 27995.000000\ wgEncodeHaibTfbsHepg2Bhlhe40V0416101PkRep2 HepG BHLHE40 2 broadPeak HepG2 BHLHE40 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 715 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 BHLHE40 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG BHLHE40 2\ subGroups view=Peaks factor=BHLHE40 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Bhlhe40V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF209JJD K562 RBM39 narrowPeak Transcription Factor ChIP-seq Peaks of RBM39 in K562 from ENCODE 3 (ENCFF209JJD) 1 715 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RBM39 in K562 from ENCODE 3 (ENCFF209JJD)\ parent encTfChipPk off\ shortLabel K562 RBM39\ subGroups cellType=K562 factor=RBM39\ track encTfChipPkENCFF209JJD\ wgEncodeCshlLongRnaSeqSkmcCellTotalJunctions SkMC cel tot J bed 6 + SkMC whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL 0 715 0 0 0 127 127 127 0 0 0 expression 1 longLabel SkMC whole cell total RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel SkMC cel tot J\ subGroups view=Junctions cellType=t3SKMC localization=CELL rnaExtract=TOTAL rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqSkmcCellTotalJunctions\ type bed 6 +\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_ctss_fwd Tc:Mcf7ToHrg_02hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_forward 0 715 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep1.CNhs12442.13055-139H4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13055-139H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_tpm_fwd Tc:Mcf7ToHrg_02hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_forward 1 715 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep1.CNhs12442.13055-139H4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13055-139H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Bhlhe40V0416101RawRep2 HepG BHLHE40 2 bigWig 0.189026 240.016006 HepG2 BHLHE40 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 716 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 BHLHE40 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG BHLHE40 2\ subGroups view=RawSignal factor=BHLHE40 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Bhlhe40V0416101RawRep2\ type bigWig 0.189026 240.016006\ encTfChipPkENCFF484CKD K562 RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in K562 from ENCODE 3 (ENCFF484CKD) 1 716 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in K562 from ENCODE 3 (ENCFF484CKD)\ parent encTfChipPk off\ shortLabel K562 RCOR1\ subGroups cellType=K562 factor=RCOR1\ track encTfChipPkENCFF484CKD\ wgEncodeSydhTfbsMcf10aesCfosEtoh01HvdPk MCF1 EtH cFOS Hvd narrowPeak MCF10A c-FOS Harvard EtOH .01% 36h ChIP-seq Peaks from ENCODE/SYDH 3 716 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A c-FOS Harvard EtOH .01% 36h ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel MCF1 EtH cFOS Hvd\ subGroups view=Peaks factor=CFOS cellType=t3MCF10AERSRC control=HVD treatment=ETOH01d\ track wgEncodeSydhTfbsMcf10aesCfosEtoh01HvdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqSkmc9011302CellTotalMinusRep1 SkMC cel tot - 1 bigWig 1.000000 13815129.000000 SkMC whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 716 0 0 0 127 127 127 0 0 0 expression 0 longLabel SkMC whole cell total RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel SkMC cel tot - 1\ subGroups view=MinusSignal cellType=t3SKMC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqSkmc9011302CellTotalMinusRep1\ type bigWig 1.000000 13815129.000000\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_ctss_rev Tc:Mcf7ToHrg_02hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_reverse 0 716 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep1.CNhs12442.13055-139H4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13055-139H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_tpm_rev Tc:Mcf7ToHrg_02hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_reverse 1 716 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep1.CNhs12442.13055-139H4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13055-139H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Cebpbsc150V0416101PkRep1 HepG CEBPB V101 1 broadPeak HepG2 CEBPB v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 717 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 CEBPB v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG CEBPB V101 1\ subGroups view=Peaks factor=CEBPB cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Cebpbsc150V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF895QLA K562 REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in K562 from ENCODE 3 (ENCFF895QLA) 1 717 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of REST in K562 from ENCODE 3 (ENCFF895QLA)\ parent encTfChipPk off\ shortLabel K562 REST 1\ subGroups cellType=K562 factor=REST\ track encTfChipPkENCFF895QLA\ wgEncodeSydhTfbsMcf10aesCfosEtoh01HvdSig MCF1 EtH cFOS Hvd bigWig 1.000000 14079.000000 MCF10A c-FOS Harvard EtOH .01% 36h ChIP-seq Signal from ENCODE/SYDH 2 717 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF10A c-FOS Harvard EtOH .01% 36h ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF1 EtH cFOS Hvd\ subGroups view=Signal factor=CFOS cellType=t3MCF10AERSRC control=HVD treatment=ETOH01d\ track wgEncodeSydhTfbsMcf10aesCfosEtoh01HvdSig\ type bigWig 1.000000 14079.000000\ wgEncodeCshlLongRnaSeqSkmc812190217CellTotalMinusRep2 SkMC cel tot - 2 bigWig 1.000000 15928128.000000 SkMC whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 717 0 0 0 127 127 127 0 0 0 expression 0 longLabel SkMC whole cell total RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel SkMC cel tot - 2\ subGroups view=MinusSignal cellType=t3SKMC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqSkmc812190217CellTotalMinusRep2\ type bigWig 1.000000 15928128.000000\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_ctss_fwd Tc:Mcf7ToHrg_02hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_forward 0 717 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep2.CNhs12659.13121-140F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13121-140F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_tpm_fwd Tc:Mcf7ToHrg_02hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_forward 1 717 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep2.CNhs12659.13121-140F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13121-140F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Cebpbsc150V0416101RawRep1 HepG CEBPB V101 1 bigWig 0.268039 190.710007 HepG2 CEBPB v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 718 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 CEBPB v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG CEBPB V101 1\ subGroups view=RawSignal factor=CEBPB cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Cebpbsc150V0416101RawRep1\ type bigWig 0.268039 190.710007\ encTfChipPkENCFF558VPP K562 REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in K562 from ENCODE 3 (ENCFF558VPP) 1 718 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of REST in K562 from ENCODE 3 (ENCFF558VPP)\ parent encTfChipPk off\ shortLabel K562 REST 2\ subGroups cellType=K562 factor=REST\ track encTfChipPkENCFF558VPP\ wgEncodeSydhTfbsMcf10aesCfosTamHvdPk MCF1 TAM cFOS Hvd narrowPeak MCF10A c-FOS Harvard 4-hydroxytamoxifen 36hr ChIP-seq Peaks from ENCODE/SYDH 3 718 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A c-FOS Harvard 4-hydroxytamoxifen 36hr ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel MCF1 TAM cFOS Hvd\ subGroups view=Peaks factor=CFOS cellType=t3MCF10AERSRC control=HVD treatment=TTAM\ track wgEncodeSydhTfbsMcf10aesCfosTamHvdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqSkmc9011302CellTotalPlusRep1 SkMC cel tot + 1 bigWig 1.000000 11029152.000000 SkMC whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 718 0 0 0 127 127 127 0 0 0 expression 0 longLabel SkMC whole cell total RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel SkMC cel tot + 1\ subGroups view=PlusSignal cellType=t3SKMC localization=CELL rnaExtract=TOTAL rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqSkmc9011302CellTotalPlusRep1\ type bigWig 1.000000 11029152.000000\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_ctss_rev Tc:Mcf7ToHrg_02hr30minBr2- bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_reverse 0 718 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep2.CNhs12659.13121-140F7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13121-140F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_tpm_rev Tc:Mcf7ToHrg_02hr30minBr2- bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_reverse 1 718 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep2.CNhs12659.13121-140F7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13121-140F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Cebpbsc150V0416101PkRep2 HepG CEBPB V101 2 broadPeak HepG2 CEBPB v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 719 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 CEBPB v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG CEBPB V101 2\ subGroups view=Peaks factor=CEBPB cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Cebpbsc150V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF237UAN K562 RFX1 1 narrowPeak Transcription Factor ChIP-seq Peaks of RFX1 in K562 from ENCODE 3 (ENCFF237UAN) 1 719 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RFX1 in K562 from ENCODE 3 (ENCFF237UAN)\ parent encTfChipPk off\ shortLabel K562 RFX1 1\ subGroups cellType=K562 factor=RFX1\ track encTfChipPkENCFF237UAN\ wgEncodeSydhTfbsMcf10aesCfosTamHvdSig MCF1 TAM cFOS Hvd bigWig 1.000000 19041.000000 MCF10A c-FOS Harvard 4-hydroxytamoxifen 36hr ChIP-seq Signal from ENCODE/SYDH 2 719 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF10A c-FOS Harvard 4-hydroxytamoxifen 36hr ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF1 TAM cFOS Hvd\ subGroups view=Signal factor=CFOS cellType=t3MCF10AERSRC control=HVD treatment=TTAM\ track wgEncodeSydhTfbsMcf10aesCfosTamHvdSig\ type bigWig 1.000000 19041.000000\ wgEncodeCshlLongRnaSeqSkmc812190217CellTotalPlusRep2 SkMC cel tot + 2 bigWig 1.000000 12582738.000000 SkMC whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 719 0 0 0 127 127 127 0 0 0 expression 0 longLabel SkMC whole cell total RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel SkMC cel tot + 2\ subGroups view=PlusSignal cellType=t3SKMC localization=CELL rnaExtract=TOTAL rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqSkmc812190217CellTotalPlusRep2\ type bigWig 1.000000 12582738.000000\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_ctss_fwd Tc:Mcf7ToHrg_02hr30minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_forward 0 719 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep3.CNhs12761.13187-141E1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13187-141E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_tpm_fwd Tc:Mcf7ToHrg_02hr30minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_forward 1 719 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep3.CNhs12761.13187-141E1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13187-141E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Cebpbsc150V0416101RawRep2 HepG CEBPB V101 2 bigWig 0.208219 165.324997 HepG2 CEBPB v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 720 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 CEBPB v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG CEBPB V101 2\ subGroups view=RawSignal factor=CEBPB cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Cebpbsc150V0416101RawRep2\ type bigWig 0.208219 165.324997\ encTfChipPkENCFF010UHD K562 RFX1 2 narrowPeak Transcription Factor ChIP-seq Peaks of RFX1 in K562 from ENCODE 3 (ENCFF010UHD) 1 720 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RFX1 in K562 from ENCODE 3 (ENCFF010UHD)\ parent encTfChipPk off\ shortLabel K562 RFX1 2\ subGroups cellType=K562 factor=RFX1\ track encTfChipPkENCFF010UHD\ wgEncodeSydhTfbsMcf10aesCfosTam112hHvdPk MCF1 TAM 12h cFOS narrowPeak MCF10A c-FOS Harvard 4-hydroxytamoxifen 12hr ChIP-seq Peaks from ENCODE/SYDH 3 720 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A c-FOS Harvard 4-hydroxytamoxifen 12hr ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel MCF1 TAM 12h cFOS\ subGroups view=Peaks factor=CFOS cellType=t3MCF10AERSRC control=HVD treatment=TTAM112H\ track wgEncodeSydhTfbsMcf10aesCfosTam112hHvdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqSknshraCellLongnonpolyaAlnRep1 SKRA cel pA- A 1 bam SK-N-SH RA whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 720 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH RA whole cell polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel SKRA cel pA- A 1\ subGroups view=Alignments cellType=t3SKNSHRA localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqSknshraCellLongnonpolyaAlnRep1\ type bam\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_ctss_rev Tc:Mcf7ToHrg_02hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_reverse 0 720 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep3.CNhs12761.13187-141E1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13187-141E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_tpm_rev Tc:Mcf7ToHrg_02hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_reverse 1 720 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep3.CNhs12761.13187-141E1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13187-141E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Cebpdsc636V0416101PkRep1 HepG CEBPD V101 1 broadPeak HepG2 CEBPD v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 721 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 CEBPD v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG CEBPD V101 1\ subGroups view=Peaks factor=CEBPDSC636 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Cebpdsc636V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF716LRI K562 RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in K562 from ENCODE 3 (ENCFF716LRI) 1 721 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RFX5 in K562 from ENCODE 3 (ENCFF716LRI)\ parent encTfChipPk off\ shortLabel K562 RFX5\ subGroups cellType=K562 factor=RFX5\ track encTfChipPkENCFF716LRI\ wgEncodeSydhTfbsMcf10aesCfosTam112hHvdSig MCF1 TAM 12h cFOS bigWig 1.000000 14588.000000 MCF10A c-FOS Harvard 4-hydroxytamoxifen 12hr ChIP-seq Signal from ENCODE/SYDH 2 721 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF10A c-FOS Harvard 4-hydroxytamoxifen 12hr ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF1 TAM 12h cFOS\ subGroups view=Signal factor=CFOS cellType=t3MCF10AERSRC control=HVD treatment=TTAM112H\ track wgEncodeSydhTfbsMcf10aesCfosTam112hHvdSig\ type bigWig 1.000000 14588.000000\ wgEncodeCshlLongRnaSeqSknshraCellLongnonpolyaAlnRep2 SKRA cel pA- A 2 bam SK-N-SH RA whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 721 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH RA whole cell polyA- RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel SKRA cel pA- A 2\ subGroups view=Alignments cellType=t3SKNSHRA localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqSknshraCellLongnonpolyaAlnRep2\ type bam\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_ctss_fwd Tc:Mcf7ToHrg_03hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_forward 0 721 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep1.CNhs12443.13056-139H5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13056-139H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_tpm_fwd Tc:Mcf7ToHrg_03hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_forward 1 721 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep1.CNhs12443.13056-139H5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13056-139H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Cebpdsc636V0416101RawRep1 HepG CEBPD V101 1 bigWig 0.513200 94.428902 HepG2 CEBPD v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 722 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 CEBPD v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG CEBPD V101 1\ subGroups view=RawSignal factor=CEBPDSC636 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Cebpdsc636V0416101RawRep1\ type bigWig 0.513200 94.428902\ encTfChipPkENCFF209HKW K562 RLF narrowPeak Transcription Factor ChIP-seq Peaks of RLF in K562 from ENCODE 3 (ENCFF209HKW) 1 722 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RLF in K562 from ENCODE 3 (ENCFF209HKW)\ parent encTfChipPk off\ shortLabel K562 RLF\ subGroups cellType=K562 factor=RLF\ track encTfChipPkENCFF209HKW\ wgEncodeSydhTfbsMcf10aesCfosTam14hHvdPk MCF1 TAM 14h cFOS narrowPeak MCF10A c-FOS Harvard 4-hydroxytamoxifen 14hr ChIP-seq Peaks from ENCODE/SYDH 3 722 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A c-FOS Harvard 4-hydroxytamoxifen 14hr ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel MCF1 TAM 14h cFOS\ subGroups view=Peaks factor=CFOS cellType=t3MCF10AERSRC control=HVD treatment=TTAM14H\ track wgEncodeSydhTfbsMcf10aesCfosTam14hHvdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqSknshraCellPamContigs SKRA cel pA- C bed 6 + SK-N-SH RA whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL 3 722 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH RA whole cell polyA- RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel SKRA cel pA- C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3SKNSHRA localization=CELL rnaExtract=PAM\ track wgEncodeCshlLongRnaSeqSknshraCellPamContigs\ type bed 6 +\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_ctss_rev Tc:Mcf7ToHrg_03hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_reverse 0 722 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep1.CNhs12443.13056-139H5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13056-139H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_tpm_rev Tc:Mcf7ToHrg_03hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_reverse 1 722 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep1.CNhs12443.13056-139H5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13056-139H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Cebpdsc636V0416101PkRep2 HepG CEBPD V101 2 broadPeak HepG2 CEBPD v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 723 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 CEBPD v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG CEBPD V101 2\ subGroups view=Peaks factor=CEBPDSC636 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Cebpdsc636V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF972LPT K562 RNF2 1 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF972LPT) 1 723 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF972LPT)\ parent encTfChipPk off\ shortLabel K562 RNF2 1\ subGroups cellType=K562 factor=RNF2\ track encTfChipPkENCFF972LPT\ wgEncodeSydhTfbsMcf10aesCfosTam14hHvdSig MCF1 TAM 14h cFOS bigWig 1.000000 21132.000000 MCF10A c-FOS Harvard 4-hydroxytamoxifen 14hr ChIP-seq Signal from ENCODE/SYDH 2 723 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF10A c-FOS Harvard 4-hydroxytamoxifen 14hr ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF1 TAM 14h cFOS\ subGroups view=Signal factor=CFOS cellType=t3MCF10AERSRC control=HVD treatment=TTAM14H\ track wgEncodeSydhTfbsMcf10aesCfosTam14hHvdSig\ type bigWig 1.000000 21132.000000\ wgEncodeCshlLongRnaSeqSknshraCellPamJunctions SKRA cel pA- J bed 6 + SK-N-SH RA whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL 0 723 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH RA whole cell polyA- RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel SKRA cel pA- J\ subGroups view=Junctions cellType=t3SKNSHRA localization=CELL rnaExtract=PAM rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqSknshraCellPamJunctions\ type bed 6 +\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_ctss_fwd Tc:Mcf7ToHrg_03hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_forward 0 723 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep2.CNhs12660.13122-140F8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13122-140F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_tpm_fwd Tc:Mcf7ToHrg_03hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_forward 1 723 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep2.CNhs12660.13122-140F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13122-140F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Cebpdsc636V0416101RawRep2 HepG CEBPD V101 2 bigWig 0.182111 200.095001 HepG2 CEBPD v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 724 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 CEBPD v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG CEBPD V101 2\ subGroups view=RawSignal factor=CEBPDSC636 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Cebpdsc636V0416101RawRep2\ type bigWig 0.182111 200.095001\ encTfChipPkENCFF987VNY K562 RNF2 2 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF987VNY) 1 724 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF987VNY)\ parent encTfChipPk off\ shortLabel K562 RNF2 2\ subGroups cellType=K562 factor=RNF2\ track encTfChipPkENCFF987VNY\ wgEncodeSydhTfbsMcf10aesCmycEtoh01HvdPk MCF1 EtH cMyc Hvd narrowPeak MCF10A c-Myc Harvard EtOH .01% 36h ChIP-seq Peaks from ENCODE/SYDH 3 724 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A c-Myc Harvard EtOH .01% 36h ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel MCF1 EtH cMyc Hvd\ subGroups view=Peaks factor=CMYC cellType=t3MCF10AERSRC control=HVD treatment=ETOH01d\ track wgEncodeSydhTfbsMcf10aesCmycEtoh01HvdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqSknshraCellLongnonpolyaMinusRawSigRep1 SKRA cel pA- - 1 bigWig 1.000000 1177854.000000 SK-N-SH RA whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 724 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH RA whole cell polyA- RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel SKRA cel pA- - 1\ subGroups view=MinusSignal cellType=t3SKNSHRA localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqSknshraCellLongnonpolyaMinusRawSigRep1\ type bigWig 1.000000 1177854.000000\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_ctss_rev Tc:Mcf7ToHrg_03hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_reverse 0 724 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep2.CNhs12660.13122-140F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13122-140F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_tpm_rev Tc:Mcf7ToHrg_03hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_reverse 1 724 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep2.CNhs12660.13122-140F8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13122-140F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Creb1sc240V0422111PkRep1 HepG CREB1 V11 1 broadPeak HepG2 CREB1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 725 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 CREB1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG CREB1 V11 1\ subGroups view=Peaks factor=CREB1SC240 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Creb1sc240V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF539WLH K562 RNF2 3 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF539WLH) 1 725 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF539WLH)\ parent encTfChipPk off\ shortLabel K562 RNF2 3\ subGroups cellType=K562 factor=RNF2\ track encTfChipPkENCFF539WLH\ wgEncodeSydhTfbsMcf10aesCmycEtoh01HvdSig MCF1 EtH cMyc Hvd bigWig 1.000000 18129.000000 MCF10A c-Myc Harvard EtOH .01% 36h ChIP-seq Signal from ENCODE/SYDH 2 725 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF10A c-Myc Harvard EtOH .01% 36h ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF1 EtH cMyc Hvd\ subGroups view=Signal factor=CMYC cellType=t3MCF10AERSRC control=HVD treatment=ETOH01d\ track wgEncodeSydhTfbsMcf10aesCmycEtoh01HvdSig\ type bigWig 1.000000 18129.000000\ wgEncodeCshlLongRnaSeqSknshraCellLongnonpolyaMinusRawSigRep2 SKRA cel pA- - 2 bigWig 1.000000 1625856.000000 SK-N-SH RA whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 725 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH RA whole cell polyA- RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel SKRA cel pA- - 2\ subGroups view=MinusSignal cellType=t3SKNSHRA localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqSknshraCellLongnonpolyaMinusRawSigRep2\ type bigWig 1.000000 1625856.000000\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_ctss_fwd Tc:Mcf7ToHrg_03hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_forward 0 725 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep3.CNhs12762.13188-141E2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13188-141E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_tpm_fwd Tc:Mcf7ToHrg_03hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_forward 1 725 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep3.CNhs12762.13188-141E2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13188-141E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Creb1sc240V0422111RawRep1 HepG CREB1 V11 1 bigWig 1.000000 11014.000000 HepG2 CREB1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 726 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 CREB1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG CREB1 V11 1\ subGroups view=RawSignal factor=CREB1SC240 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Creb1sc240V0422111RawRep1\ type bigWig 1.000000 11014.000000\ encTfChipPkENCFF644WLI K562 RNF2 4 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF644WLI) 1 726 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF644WLI)\ parent encTfChipPk off\ shortLabel K562 RNF2 4\ subGroups cellType=K562 factor=RNF2\ track encTfChipPkENCFF644WLI\ wgEncodeSydhTfbsMcf10aesCmycTam14hHvdPk MCF1 TAM 14h cMyc narrowPeak MCF10A c-Myc Harvard 4-hydroxytamoxifen 14hr ChIP-seq Peaks from ENCODE/SYDH 3 726 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A c-Myc Harvard 4-hydroxytamoxifen 14hr ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel MCF1 TAM 14h cMyc\ subGroups view=Peaks factor=CMYC cellType=t3MCF10AERSRC control=HVD treatment=TTAM14H\ track wgEncodeSydhTfbsMcf10aesCmycTam14hHvdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqSknshraCellLongnonpolyaPlusRawSigRep1 SKRA cel pA- + 1 bigWig 1.000000 8791351.000000 SK-N-SH RA whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 726 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH RA whole cell polyA- RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel SKRA cel pA- + 1\ subGroups view=PlusSignal cellType=t3SKNSHRA localization=CELL rnaExtract=PAM rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqSknshraCellLongnonpolyaPlusRawSigRep1\ type bigWig 1.000000 8791351.000000\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_ctss_rev Tc:Mcf7ToHrg_03hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_reverse 0 726 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep3.CNhs12762.13188-141E2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13188-141E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_tpm_rev Tc:Mcf7ToHrg_03hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_reverse 1 726 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep3.CNhs12762.13188-141E2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13188-141E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Creb1sc240V0422111PkRep2 HepG CREB1 V11 2 broadPeak HepG2 CREB1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 727 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 CREB1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG CREB1 V11 2\ subGroups view=Peaks factor=CREB1SC240 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Creb1sc240V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF573DRR K562 RUNX1 1 narrowPeak Transcription Factor ChIP-seq Peaks of RUNX1 in K562 from ENCODE 3 (ENCFF573DRR) 1 727 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RUNX1 in K562 from ENCODE 3 (ENCFF573DRR)\ parent encTfChipPk off\ shortLabel K562 RUNX1 1\ subGroups cellType=K562 factor=RUNX1\ track encTfChipPkENCFF573DRR\ wgEncodeSydhTfbsMcf10aesCmycTam14hHvdSig MCF1 TAM 14h cMyc bigWig 1.000000 28917.000000 MCF10A c-Myc Harvard 4-hydroxytamoxifen 14hr ChIP-seq Signal from ENCODE/SYDH 2 727 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF10A c-Myc Harvard 4-hydroxytamoxifen 14hr ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF1 TAM 14h cMyc\ subGroups view=Signal factor=CMYC cellType=t3MCF10AERSRC control=HVD treatment=TTAM14H\ track wgEncodeSydhTfbsMcf10aesCmycTam14hHvdSig\ type bigWig 1.000000 28917.000000\ wgEncodeCshlLongRnaSeqSknshraCellLongnonpolyaPlusRawSigRep2 SKRA cel pA- + 2 bigWig 1.000000 6761712.000000 SK-N-SH RA whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 727 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH RA whole cell polyA- RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel SKRA cel pA- + 2\ subGroups view=PlusSignal cellType=t3SKNSHRA localization=CELL rnaExtract=PAM rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqSknshraCellLongnonpolyaPlusRawSigRep2\ type bigWig 1.000000 6761712.000000\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_ctss_fwd Tc:Mcf7ToHrg_03hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_forward 0 727 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep1.CNhs12444.13057-139H6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13057-139H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_tpm_fwd Tc:Mcf7ToHrg_03hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_forward 1 727 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep1.CNhs12444.13057-139H6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13057-139H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Creb1sc240V0422111RawRep2 HepG CREB1 V11 2 bigWig 1.000000 5763.000000 HepG2 CREB1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 728 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 CREB1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG CREB1 V11 2\ subGroups view=RawSignal factor=CREB1SC240 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Creb1sc240V0422111RawRep2\ type bigWig 1.000000 5763.000000\ encTfChipPkENCFF422BXE K562 RUNX1 2 narrowPeak Transcription Factor ChIP-seq Peaks of RUNX1 in K562 from ENCODE 3 (ENCFF422BXE) 1 728 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of RUNX1 in K562 from ENCODE 3 (ENCFF422BXE)\ parent encTfChipPk off\ shortLabel K562 RUNX1 2\ subGroups cellType=K562 factor=RUNX1\ track encTfChipPkENCFF422BXE\ wgEncodeSydhTfbsMcf10aesE2f4TamHvdPk MCF1 TAM E2F4 Hvd narrowPeak MCF10A E2F4 Harvard 4-hydroxytamoxifen 36hr ChIP-seq Peaks from ENCODE/SYDH 3 728 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A E2F4 Harvard 4-hydroxytamoxifen 36hr ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel MCF1 TAM E2F4 Hvd\ subGroups view=Peaks factor=E2F4 cellType=t3MCF10AERSRC control=HVD treatment=TTAM\ track wgEncodeSydhTfbsMcf10aesE2f4TamHvdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqSknshraCellPapAlnRep1 SKRA cel pA+ A 1 bam SK-N-SH RA whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL 0 728 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH RA whole cell polyA+ RNA-seq Alignments Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel SKRA cel pA+ A 1\ subGroups view=Alignments cellType=t3SKNSHRA localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqSknshraCellPapAlnRep1\ type bam\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_ctss_rev Tc:Mcf7ToHrg_03hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_reverse 0 728 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep1.CNhs12444.13057-139H6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13057-139H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_tpm_rev Tc:Mcf7ToHrg_03hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_reverse 1 728 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep1.CNhs12444.13057-139H6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13057-139H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Ctcfsc5916V0416101PkRep1 HepG CTCF V101 1 broadPeak HepG2 CTCF 5916 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 729 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 CTCF 5916 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG CTCF V101 1\ subGroups view=Peaks factor=CTCFSC5916 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Ctcfsc5916V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF478MPX K562 SAFB narrowPeak Transcription Factor ChIP-seq Peaks of SAFB in K562 from ENCODE 3 (ENCFF478MPX) 1 729 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SAFB in K562 from ENCODE 3 (ENCFF478MPX)\ parent encTfChipPk off\ shortLabel K562 SAFB\ subGroups cellType=K562 factor=SAFB\ track encTfChipPkENCFF478MPX\ wgEncodeSydhTfbsMcf10aesE2f4TamHvdSig MCF1 TAM E2F4 Hvd bigWig 1.000000 27434.000000 MCF10A E2F4 Harvard 4-hydroxytamoxifen 36hr ChIP-seq Signal from ENCODE/SYDH 2 729 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF10A E2F4 Harvard 4-hydroxytamoxifen 36hr ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF1 TAM E2F4 Hvd\ subGroups view=Signal factor=E2F4 cellType=t3MCF10AERSRC control=HVD treatment=TTAM\ track wgEncodeSydhTfbsMcf10aesE2f4TamHvdSig\ type bigWig 1.000000 27434.000000\ wgEncodeCshlLongRnaSeqSknshraCellPapAlnRep2 SKRA cel pA+ A 2 bam SK-N-SH RA whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL 0 729 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH RA whole cell polyA+ RNA-seq Alignments Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewAlignments off\ shortLabel SKRA cel pA+ A 2\ subGroups view=Alignments cellType=t3SKNSHRA localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqSknshraCellPapAlnRep2\ type bam\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_ctss_fwd Tc:Mcf7ToHrg_03hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_forward 0 729 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep2.CNhs12662.13123-140F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13123-140F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_tpm_fwd Tc:Mcf7ToHrg_03hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_forward 1 729 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep2.CNhs12662.13123-140F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13123-140F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Ctcfsc5916V0416101RawRep1 HepG CTCF V101 1 bigWig 0.136731 91.814903 HepG2 CTCF 5916 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 730 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 CTCF 5916 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG CTCF V101 1\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Ctcfsc5916V0416101RawRep1\ type bigWig 0.136731 91.814903\ encTfChipPkENCFF624NUZ K562 SAFB2 narrowPeak Transcription Factor ChIP-seq Peaks of SAFB2 in K562 from ENCODE 3 (ENCFF624NUZ) 1 730 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SAFB2 in K562 from ENCODE 3 (ENCFF624NUZ)\ parent encTfChipPk off\ shortLabel K562 SAFB2\ subGroups cellType=K562 factor=SAFB2\ track encTfChipPkENCFF624NUZ\ wgEncodeSydhTfbsMcf10aesPol2Etoh01StdPk MCF1 EtH Pol2 Std narrowPeak MCF10A Pol2 Standard EtOH .01% 36h ChIP-seq Peaks from ENCODE/SYDH 3 730 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A Pol2 Standard EtOH .01% 36h ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel MCF1 EtH Pol2 Std\ subGroups view=Peaks factor=POL2 cellType=t3MCF10AERSRC control=STD treatment=ETOH01d\ track wgEncodeSydhTfbsMcf10aesPol2Etoh01StdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqSknshraCellPapContigs SKRA cel pA+ C bed 6 + SK-N-SH RA whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL 3 730 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH RA whole cell polyA+ RNA-seq Contigs Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewContigs off\ shortLabel SKRA cel pA+ C\ subGroups view=Contigs rep=Pooled rank=none cellType=t3SKNSHRA localization=CELL rnaExtract=PAP\ track wgEncodeCshlLongRnaSeqSknshraCellPapContigs\ type bed 6 +\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_ctss_rev Tc:Mcf7ToHrg_03hr30minBr2- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_reverse 0 730 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep2.CNhs12662.13123-140F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13123-140F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_tpm_rev Tc:Mcf7ToHrg_03hr30minBr2- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_reverse 1 730 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep2.CNhs12662.13123-140F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13123-140F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Ctcfsc5916V0416101PkRep2 HepG CTCF V101 2 broadPeak HepG2 CTCF 5916 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 731 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 CTCF 5916 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG CTCF V101 2\ subGroups view=Peaks factor=CTCFSC5916 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Ctcfsc5916V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF718NUA K562 SAP30 narrowPeak Transcription Factor ChIP-seq Peaks of SAP30 in K562 from ENCODE 3 (ENCFF718NUA) 1 731 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SAP30 in K562 from ENCODE 3 (ENCFF718NUA)\ parent encTfChipPk off\ shortLabel K562 SAP30\ subGroups cellType=K562 factor=SAP30\ track encTfChipPkENCFF718NUA\ wgEncodeSydhTfbsMcf10aesPol2Etoh01StdSig MCF1 EtH Pol2 Std bigWig 1.000000 59340.000000 MCF10A Pol2 Standard EtOH .01% 36h ChIP-seq Signal from ENCODE/SYDH 2 731 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF10A Pol2 Standard EtOH .01% 36h ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF1 EtH Pol2 Std\ subGroups view=Signal factor=POL2 cellType=t3MCF10AERSRC control=STD treatment=ETOH01d\ track wgEncodeSydhTfbsMcf10aesPol2Etoh01StdSig\ type bigWig 1.000000 59340.000000\ wgEncodeCshlLongRnaSeqSknshraCellPapJunctions SKRA cel pA+ J bed 6 + SK-N-SH RA whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL 0 731 0 0 0 127 127 127 0 0 0 expression 1 longLabel SK-N-SH RA whole cell polyA+ RNA-seq Junctions Pooled from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewJunctions off\ shortLabel SKRA cel pA+ J\ subGroups view=Junctions cellType=t3SKNSHRA localization=CELL rnaExtract=PAP rep=Pooled rank=none\ track wgEncodeCshlLongRnaSeqSknshraCellPapJunctions\ type bed 6 +\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_ctss_fwd Tc:Mcf7ToHrg_03hr30minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_forward 0 731 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep3.CNhs12763.13189-141E3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13189-141E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_tpm_fwd Tc:Mcf7ToHrg_03hr30minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_forward 1 731 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep3.CNhs12763.13189-141E3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13189-141E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Ctcfsc5916V0416101RawRep2 HepG CTCF V101 2 bigWig 0.141331 199.912994 HepG2 CTCF 5916 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 732 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 CTCF 5916 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG CTCF V101 2\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Ctcfsc5916V0416101RawRep2\ type bigWig 0.141331 199.912994\ encTfChipPkENCFF095WDB K562 SETDB1 1 narrowPeak Transcription Factor ChIP-seq Peaks of SETDB1 in K562 from ENCODE 3 (ENCFF095WDB) 1 732 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SETDB1 in K562 from ENCODE 3 (ENCFF095WDB)\ parent encTfChipPk off\ shortLabel K562 SETDB1 1\ subGroups cellType=K562 factor=SETDB1\ track encTfChipPkENCFF095WDB\ wgEncodeSydhTfbsMcf10aesPol2TamStdPk MCF1 TAM Pol2 Std narrowPeak MCF10A Pol2 Standard 4-hydroxytamoxifen 36hr ChIP-seq Peaks from ENCODE/SYDH 3 732 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A Pol2 Standard 4-hydroxytamoxifen 36hr ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel MCF1 TAM Pol2 Std\ subGroups view=Peaks factor=POL2 cellType=t3MCF10AERSRC control=STD treatment=TTAM\ track wgEncodeSydhTfbsMcf10aesPol2TamStdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqSknshraCellPapMinusRawSigRep1 SKRA cel pA+ - 1 bigWig 1.000000 1472243.000000 SK-N-SH RA whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL 2 732 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH RA whole cell polyA+ RNA-seq Minus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel SKRA cel pA+ - 1\ subGroups view=MinusSignal cellType=t3SKNSHRA localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqSknshraCellPapMinusRawSigRep1\ type bigWig 1.000000 1472243.000000\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_ctss_rev Tc:Mcf7ToHrg_03hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_reverse 0 732 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep3.CNhs12763.13189-141E3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13189-141E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_tpm_rev Tc:Mcf7ToHrg_03hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_reverse 1 732 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep3.CNhs12763.13189-141E3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13189-141E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Elf1sc631V0416101PkRep1 HepG ELF1 V101 1 broadPeak HepG2 ELF1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 733 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 ELF1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG ELF1 V101 1\ subGroups view=Peaks factor=ELF1SC631 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Elf1sc631V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF294EHN K562 SETDB1 2 narrowPeak Transcription Factor ChIP-seq Peaks of SETDB1 in K562 from ENCODE 3 (ENCFF294EHN) 1 733 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SETDB1 in K562 from ENCODE 3 (ENCFF294EHN)\ parent encTfChipPk off\ shortLabel K562 SETDB1 2\ subGroups cellType=K562 factor=SETDB1\ track encTfChipPkENCFF294EHN\ wgEncodeSydhTfbsMcf10aesPol2TamStdSig MCF1 TAM Pol2 Std bigWig 1.000000 74444.000000 MCF10A Pol2 Standard 4-hydroxytamoxifen 36hr ChIP-seq Signal from ENCODE/SYDH 2 733 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF10A Pol2 Standard 4-hydroxytamoxifen 36hr ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF1 TAM Pol2 Std\ subGroups view=Signal factor=POL2 cellType=t3MCF10AERSRC control=STD treatment=TTAM\ track wgEncodeSydhTfbsMcf10aesPol2TamStdSig\ type bigWig 1.000000 74444.000000\ wgEncodeCshlLongRnaSeqSknshraCellPapMinusRawSigRep2 SKRA cel pA+ - 2 bigWig 1.000000 734082.000000 SK-N-SH RA whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL 2 733 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH RA whole cell polyA+ RNA-seq Minus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewMinusSig off\ shortLabel SKRA cel pA+ - 2\ subGroups view=MinusSignal cellType=t3SKNSHRA localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqSknshraCellPapMinusRawSigRep2\ type bigWig 1.000000 734082.000000\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_ctss_fwd Tc:Mcf7ToHrg_04hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_forward 0 733 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep1.CNhs12445.13058-139H7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13058-139H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_tpm_fwd Tc:Mcf7ToHrg_04hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_forward 1 733 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep1.CNhs12445.13058-139H7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13058-139H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Elf1sc631V0416101RawRep1 HepG ELF1 V101 1 bigWig 0.203910 154.410995 HepG2 ELF1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 734 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 ELF1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG ELF1 V101 1\ subGroups view=RawSignal factor=ELF1SC631 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Elf1sc631V0416101RawRep1\ type bigWig 0.203910 154.410995\ encTfChipPkENCFF191MPD K562 SIN3A 1 narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in K562 from ENCODE 3 (ENCFF191MPD) 1 734 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in K562 from ENCODE 3 (ENCFF191MPD)\ parent encTfChipPk off\ shortLabel K562 SIN3A 1\ subGroups cellType=K562 factor=SIN3A\ track encTfChipPkENCFF191MPD\ wgEncodeSydhTfbsMcf10aesStat3Tam112hHvdPk MCF1 TAM 12h STA3 narrowPeak MCF10A STAT3 Harvard 4-hydroxytamoxifen 12hr ChIP-seq Peaks from ENCODE/SYDH 3 734 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A STAT3 Harvard 4-hydroxytamoxifen 12hr ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel MCF1 TAM 12h STA3\ subGroups view=Peaks factor=STAT3 cellType=t3MCF10AERSRC control=HVD treatment=TTAM112H\ track wgEncodeSydhTfbsMcf10aesStat3Tam112hHvdPk\ type narrowPeak\ wgEncodeCshlLongRnaSeqSknshraCellPapPlusRawSigRep1 SKRA cel pA+ + 1 bigWig 1.000000 849498.000000 SK-N-SH RA whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL 2 734 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH RA whole cell polyA+ RNA-seq Plus signal Rep 1 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel SKRA cel pA+ + 1\ subGroups view=PlusSignal cellType=t3SKNSHRA localization=CELL rnaExtract=PAP rep=rep1 rank=rank1\ track wgEncodeCshlLongRnaSeqSknshraCellPapPlusRawSigRep1\ type bigWig 1.000000 849498.000000\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_ctss_rev Tc:Mcf7ToHrg_04hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_reverse 0 734 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep1.CNhs12445.13058-139H7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13058-139H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_tpm_rev Tc:Mcf7ToHrg_04hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_reverse 1 734 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep1.CNhs12445.13058-139H7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13058-139H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Elf1sc631V0416101PkRep2 HepG ELF1 V101 2 broadPeak HepG2 ELF1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 735 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 ELF1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG ELF1 V101 2\ subGroups view=Peaks factor=ELF1SC631 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Elf1sc631V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF803COK K562 SIN3A 2 narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in K562 from ENCODE 3 (ENCFF803COK) 1 735 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in K562 from ENCODE 3 (ENCFF803COK)\ parent encTfChipPk off\ shortLabel K562 SIN3A 2\ subGroups cellType=K562 factor=SIN3A\ track encTfChipPkENCFF803COK\ wgEncodeSydhTfbsMcf10aesStat3Tam112hHvdSig MCF1 TAM 12h STA3 bigWig 1.000000 12103.000000 MCF10A STAT3 Harvard 4-hydroxytamoxifen 12hr ChIP-seq Signal from ENCODE/SYDH 2 735 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF10A STAT3 Harvard 4-hydroxytamoxifen 12hr ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF1 TAM 12h STA3\ subGroups view=Signal factor=STAT3 cellType=t3MCF10AERSRC control=HVD treatment=TTAM112H\ track wgEncodeSydhTfbsMcf10aesStat3Tam112hHvdSig\ type bigWig 1.000000 12103.000000\ wgEncodeCshlLongRnaSeqSknshraCellPapPlusRawSigRep2 SKRA cel pA+ + 2 bigWig 1.000000 3970030.000000 SK-N-SH RA whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL 2 735 0 0 0 127 127 127 0 0 0 expression 0 longLabel SK-N-SH RA whole cell polyA+ RNA-seq Plus signal Rep 2 from ENCODE/CSHL\ parent wgEncodeCshlLongRnaSeqViewPlusSig off\ shortLabel SKRA cel pA+ + 2\ subGroups view=PlusSignal cellType=t3SKNSHRA localization=CELL rnaExtract=PAP rep=rep2 rank=rank2\ track wgEncodeCshlLongRnaSeqSknshraCellPapPlusRawSigRep2\ type bigWig 1.000000 3970030.000000\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_ctss_fwd Tc:Mcf7ToHrg_04hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_forward 0 735 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep2.CNhs12663.13124-140G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13124-140G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_tpm_fwd Tc:Mcf7ToHrg_04hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_forward 1 735 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep2.CNhs12663.13124-140G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13124-140G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Elf1sc631V0416101RawRep2 HepG ELF1 V101 2 bigWig 0.224080 182.289001 HepG2 ELF1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 736 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 ELF1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG ELF1 V101 2\ subGroups view=RawSignal factor=ELF1SC631 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Elf1sc631V0416101RawRep2\ type bigWig 0.224080 182.289001\ encTfChipPkENCFF280GTU K562 SIN3B narrowPeak Transcription Factor ChIP-seq Peaks of SIN3B in K562 from ENCODE 3 (ENCFF280GTU) 1 736 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SIN3B in K562 from ENCODE 3 (ENCFF280GTU)\ parent encTfChipPk off\ shortLabel K562 SIN3B\ subGroups cellType=K562 factor=SIN3B\ track encTfChipPkENCFF280GTU\ wgEncodeSydhTfbsMcf10aesStat3Etoh01StdPk MCF1 EtH STA3 Std narrowPeak MCF10A STAT3 Standard EtOH .01% 36h ChIP-seq Peaks from ENCODE/SYDH 3 736 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A STAT3 Standard EtOH .01% 36h ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel MCF1 EtH STA3 Std\ subGroups view=Peaks factor=STAT3 cellType=t3MCF10AERSRC control=STD treatment=ETOH01d\ track wgEncodeSydhTfbsMcf10aesStat3Etoh01StdPk\ type narrowPeak\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_ctss_rev Tc:Mcf7ToHrg_04hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_reverse 0 736 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep2.CNhs12663.13124-140G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13124-140G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_tpm_rev Tc:Mcf7ToHrg_04hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_reverse 1 736 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep2.CNhs12663.13124-140G1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13124-140G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Fosl2V0416101PkRep1 HepG FOSL2 V101 1 broadPeak HepG2 FOSL2 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 737 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 FOSL2 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG FOSL2 V101 1\ subGroups view=Peaks factor=FOSL2 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Fosl2V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF671JEN K562 SIRT6 narrowPeak Transcription Factor ChIP-seq Peaks of SIRT6 in K562 from ENCODE 3 (ENCFF671JEN) 1 737 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SIRT6 in K562 from ENCODE 3 (ENCFF671JEN)\ parent encTfChipPk off\ shortLabel K562 SIRT6\ subGroups cellType=K562 factor=SIRT6\ track encTfChipPkENCFF671JEN\ wgEncodeSydhTfbsMcf10aesStat3Etoh01StdSig MCF1 EtH STA3 Std bigWig 1.000000 19260.000000 MCF10A STAT3 Standard EtOH .01% 36h ChIP-seq Signal from ENCODE/SYDH 2 737 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF10A STAT3 Standard EtOH .01% 36h ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF1 EtH STA3 Std\ subGroups view=Signal factor=STAT3 cellType=t3MCF10AERSRC control=STD treatment=ETOH01d\ track wgEncodeSydhTfbsMcf10aesStat3Etoh01StdSig\ type bigWig 1.000000 19260.000000\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_ctss_fwd Tc:Mcf7ToHrg_04hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_forward 0 737 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep3.CNhs12764.13190-141E4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13190-141E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_tpm_fwd Tc:Mcf7ToHrg_04hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_forward 1 737 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep3.CNhs12764.13190-141E4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13190-141E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Fosl2V0416101RawRep1 HepG FOSL2 V101 1 bigWig 0.092749 412.317993 HepG2 FOSL2 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 738 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 FOSL2 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG FOSL2 V101 1\ subGroups view=RawSignal factor=FOSL2 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Fosl2V0416101RawRep1\ type bigWig 0.092749 412.317993\ encTfChipPkENCFF033EBX K562 SIX5 narrowPeak Transcription Factor ChIP-seq Peaks of SIX5 in K562 from ENCODE 3 (ENCFF033EBX) 1 738 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SIX5 in K562 from ENCODE 3 (ENCFF033EBX)\ parent encTfChipPk off\ shortLabel K562 SIX5\ subGroups cellType=K562 factor=SIX5\ track encTfChipPkENCFF033EBX\ wgEncodeSydhTfbsMcf10aesStat3TamStdPk MCF1 TAM STA3 Std narrowPeak MCF10A STAT3 Standard 4-hydroxytamoxifen 36hr ChIP-seq Peaks from ENCODE/SYDH 3 738 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF10A STAT3 Standard 4-hydroxytamoxifen 36hr ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel MCF1 TAM STA3 Std\ subGroups view=Peaks factor=STAT3 cellType=t3MCF10AERSRC control=STD treatment=TTAM\ track wgEncodeSydhTfbsMcf10aesStat3TamStdPk\ type narrowPeak\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_ctss_rev Tc:Mcf7ToHrg_04hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_reverse 0 738 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep3.CNhs12764.13190-141E4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13190-141E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_tpm_rev Tc:Mcf7ToHrg_04hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_reverse 1 738 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep3.CNhs12764.13190-141E4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13190-141E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Fosl2V0416101PkRep2 HepG FOSL2 V101 2 broadPeak HepG2 FOSL2 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 739 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 FOSL2 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG FOSL2 V101 2\ subGroups view=Peaks factor=FOSL2 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Fosl2V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF481WGW K562 SKIL narrowPeak Transcription Factor ChIP-seq Peaks of SKIL in K562 from ENCODE 3 (ENCFF481WGW) 1 739 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SKIL in K562 from ENCODE 3 (ENCFF481WGW)\ parent encTfChipPk off\ shortLabel K562 SKIL\ subGroups cellType=K562 factor=SKIL\ track encTfChipPkENCFF481WGW\ wgEncodeSydhTfbsMcf10aesStat3TamStdSig MCF1 TAM STA3 Std bigWig 1.000000 15726.000000 MCF10A STAT3 Standard 4-hydroxytamoxifen 36hr ChIP-seq Signal from ENCODE/SYDH 2 739 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF10A STAT3 Standard 4-hydroxytamoxifen 36hr ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF1 TAM STA3 Std\ subGroups view=Signal factor=STAT3 cellType=t3MCF10AERSRC control=STD treatment=TTAM\ track wgEncodeSydhTfbsMcf10aesStat3TamStdSig\ type bigWig 1.000000 15726.000000\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_ctss_fwd Tc:Mcf7ToHrg_05hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_forward 0 739 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep1.CNhs12446.13059-139H8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13059-139H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_tpm_fwd Tc:Mcf7ToHrg_05hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_forward 1 739 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep1.CNhs12446.13059-139H8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13059-139H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Fosl2V0416101RawRep2 HepG FOSL2 V101 2 bigWig 0.194797 145.464996 HepG2 FOSL2 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 740 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 FOSL2 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG FOSL2 V101 2\ subGroups view=RawSignal factor=FOSL2 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Fosl2V0416101RawRep2\ type bigWig 0.194797 145.464996\ encTfChipPkENCFF315YAF K562 SMAD1 narrowPeak Transcription Factor ChIP-seq Peaks of SMAD1 in K562 from ENCODE 3 (ENCFF315YAF) 1 740 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SMAD1 in K562 from ENCODE 3 (ENCFF315YAF)\ parent encTfChipPk off\ shortLabel K562 SMAD1\ subGroups cellType=K562 factor=SMAD1\ track encTfChipPkENCFF315YAF\ wgEncodeSydhTfbsMcf10aesInputHvdSig MCF1 Input Hvd bigWig 1.000000 82889.000000 MCF10A Input Harvard ChIP-seq Signal from ENCODE/SYDH 2 740 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF10A Input Harvard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF1 Input Hvd\ subGroups view=Signal factor=ZZZINPUTHVD cellType=t3MCF10AERSRC control=HVD treatment=aNONE\ track wgEncodeSydhTfbsMcf10aesInputHvdSig\ type bigWig 1.000000 82889.000000\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_ctss_rev Tc:Mcf7ToHrg_05hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_reverse 0 740 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep1.CNhs12446.13059-139H8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13059-139H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_tpm_rev Tc:Mcf7ToHrg_05hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_reverse 1 740 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep1.CNhs12446.13059-139H8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13059-139H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Foxa1sc101058V0416101PkRep1 HepG FOXA1 V101 1 broadPeak HepG2 FOXA1 101058 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 741 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 FOXA1 101058 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG FOXA1 V101 1\ subGroups view=Peaks factor=FOXA1SC101058 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Foxa1sc101058V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF011KRN K562 SMAD2 narrowPeak Transcription Factor ChIP-seq Peaks of SMAD2 in K562 from ENCODE 3 (ENCFF011KRN) 1 741 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SMAD2 in K562 from ENCODE 3 (ENCFF011KRN)\ parent encTfChipPk off\ shortLabel K562 SMAD2\ subGroups cellType=K562 factor=SMAD2\ track encTfChipPkENCFF011KRN\ wgEncodeSydhTfbsMcf10aesInputEtoh01bStdSig MCF1 Et4h Inpt Sd bigWig 1.000000 11967.000000 MCF10A Input Standard EtOH .01% 36h 4h ChIP-seq Signal from ENCODE/SYDH 2 741 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF10A Input Standard EtOH .01% 36h 4h ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF1 Et4h Inpt Sd\ subGroups view=Signal factor=ZZZINPUTSTD cellType=t3MCF10AERSRC control=STD treatment=ETOH01b\ track wgEncodeSydhTfbsMcf10aesInputEtoh01bStdSig\ type bigWig 1.000000 11967.000000\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_ctss_fwd Tc:Mcf7ToHrg_05hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_forward 0 741 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep2.CNhs12664.13125-140G2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13125-140G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_tpm_fwd Tc:Mcf7ToHrg_05hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_forward 1 741 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep2.CNhs12664.13125-140G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13125-140G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Foxa1sc101058V0416101RawRep1 HepG FOXA1 V101 1 bigWig 0.154560 76.507401 HepG2 FOXA1 101058 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 742 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 FOXA1 101058 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG FOXA1 V101 1\ subGroups view=RawSignal factor=FOXA1SC101058 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Foxa1sc101058V0416101RawRep1\ type bigWig 0.154560 76.507401\ encTfChipPkENCFF178MOP K562 SMAD5 narrowPeak Transcription Factor ChIP-seq Peaks of SMAD5 in K562 from ENCODE 3 (ENCFF178MOP) 1 742 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SMAD5 in K562 from ENCODE 3 (ENCFF178MOP)\ parent encTfChipPk off\ shortLabel K562 SMAD5\ subGroups cellType=K562 factor=SMAD5\ track encTfChipPkENCFF178MOP\ wgEncodeSydhTfbsMcf10aesInputEtoh01cStdSig MCF1 Et12 Inpt Sd bigWig 1.000000 10652.000000 MCF10A Input Standard EtOH .01% 36h 12h ChIP-seq Signal from ENCODE/SYDH 2 742 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF10A Input Standard EtOH .01% 36h 12h ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF1 Et12 Inpt Sd\ subGroups view=Signal factor=ZZZINPUTSTD cellType=t3MCF10AERSRC control=STD treatment=ETOH01c\ track wgEncodeSydhTfbsMcf10aesInputEtoh01cStdSig\ type bigWig 1.000000 10652.000000\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_ctss_rev Tc:Mcf7ToHrg_05hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_reverse 0 742 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep2.CNhs12664.13125-140G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13125-140G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_tpm_rev Tc:Mcf7ToHrg_05hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_reverse 1 742 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep2.CNhs12664.13125-140G2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13125-140G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Foxa1sc101058V0416101PkRep2 HepG FOXA1 V101 2 broadPeak HepG2 FOXA1 101058 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 743 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 FOXA1 101058 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG FOXA1 V101 2\ subGroups view=Peaks factor=FOXA1SC101058 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Foxa1sc101058V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF883TOD K562 SMARCA4 1 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF883TOD) 1 743 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF883TOD)\ parent encTfChipPk off\ shortLabel K562 SMARCA4 1\ subGroups cellType=K562 factor=SMARCA4\ track encTfChipPkENCFF883TOD\ wgEncodeSydhTfbsMcf10aesInputStdSig MCF1 Inpt Std bigWig 1.000000 35209.000000 MCF10A Input Standard ChIP-seq Signal from ENCODE/SYDH 2 743 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF10A Input Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel MCF1 Inpt Std\ subGroups view=Signal factor=ZZZINPUTSTD cellType=t3MCF10AERSRC control=STD treatment=aNONE\ track wgEncodeSydhTfbsMcf10aesInputStdSig\ type bigWig 1.000000 35209.000000\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_ctss_fwd Tc:Mcf7ToHrg_05hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_forward 0 743 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep3.CNhs12765.13191-141E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13191-141E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_tpm_fwd Tc:Mcf7ToHrg_05hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_forward 1 743 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep3.CNhs12765.13191-141E5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13191-141E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Foxa1sc101058V0416101RawRep2 HepG FOXA1 V101 2 bigWig 0.377871 100.230003 HepG2 FOXA1 101058 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 744 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 FOXA1 101058 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG FOXA1 V101 2\ subGroups view=RawSignal factor=FOXA1SC101058 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Foxa1sc101058V0416101RawRep2\ type bigWig 0.377871 100.230003\ encTfChipPkENCFF710LRU K562 SMARCA4 2 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF710LRU) 1 744 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF710LRU)\ parent encTfChipPk off\ shortLabel K562 SMARCA4 2\ subGroups cellType=K562 factor=SMARCA4\ track encTfChipPkENCFF710LRU\ wgEncodeSydhTfbsNb4CmycStdPk NB4 cMyc Std narrowPeak NB4 c-Myc Standard ChIP-seq Peaks from ENCODE/SYDH 3 744 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 c-Myc Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel NB4 cMyc Std\ subGroups view=Peaks factor=CMYC cellType=t3NB4 control=STD treatment=aNONE\ track wgEncodeSydhTfbsNb4CmycStdPk\ type narrowPeak\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_ctss_rev Tc:Mcf7ToHrg_05hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_reverse 0 744 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep3.CNhs12765.13191-141E5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13191-141E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_tpm_rev Tc:Mcf7ToHrg_05hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_reverse 1 744 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep3.CNhs12765.13191-141E5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13191-141E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Foxa1sc6553V0416101PkRep1 HepG FOXA1 V101 1 broadPeak HepG2 FOXA1 6553 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 745 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 FOXA1 6553 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG FOXA1 V101 1\ subGroups view=Peaks factor=FOXA1SC6553 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Foxa1sc6553V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF197YHU K562 SMARCA4 3 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF197YHU) 1 745 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF197YHU)\ parent encTfChipPk off\ shortLabel K562 SMARCA4 3\ subGroups cellType=K562 factor=SMARCA4\ track encTfChipPkENCFF197YHU\ wgEncodeSydhTfbsNb4CmycStdSig NB4 cMyc Std bigWig 1.000000 12674.000000 NB4 c-Myc Standard ChIP-seq Signal from ENCODE/SYDH 2 745 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NB4 c-Myc Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel NB4 cMyc Std\ subGroups view=Signal factor=CMYC cellType=t3NB4 control=STD treatment=aNONE\ track wgEncodeSydhTfbsNb4CmycStdSig\ type bigWig 1.000000 12674.000000\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_ctss_fwd Tc:Mcf7ToHrg_06hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_forward 0 745 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep1.CNhs12447.13060-139H9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13060-139H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_tpm_fwd Tc:Mcf7ToHrg_06hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_forward 1 745 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep1.CNhs12447.13060-139H9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13060-139H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Foxa1sc6553V0416101RawRep1 HepG FOXA1 V101 1 bigWig 0.169883 73.262001 HepG2 FOXA1 6553 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 746 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 FOXA1 6553 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG FOXA1 V101 1\ subGroups view=RawSignal factor=FOXA1SC6553 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Foxa1sc6553V0416101RawRep1\ type bigWig 0.169883 73.262001\ encTfChipPkENCFF995NIE K562 SMARCA5 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA5 in K562 from ENCODE 3 (ENCFF995NIE) 1 746 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SMARCA5 in K562 from ENCODE 3 (ENCFF995NIE)\ parent encTfChipPk off\ shortLabel K562 SMARCA5\ subGroups cellType=K562 factor=SMARCA5\ track encTfChipPkENCFF995NIE\ wgEncodeSydhTfbsNb4MaxStdPk NB4 Max Std narrowPeak NB4 Max Standard ChIP-seq Peaks from ENCODE/SYDH 3 746 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 Max Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel NB4 Max Std\ subGroups view=Peaks factor=MAX cellType=t3NB4 control=STD treatment=aNONE\ track wgEncodeSydhTfbsNb4MaxStdPk\ type narrowPeak\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_ctss_rev Tc:Mcf7ToHrg_06hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_reverse 0 746 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep1.CNhs12447.13060-139H9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13060-139H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_tpm_rev Tc:Mcf7ToHrg_06hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_reverse 1 746 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep1.CNhs12447.13060-139H9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13060-139H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Foxa1sc6553V0416101PkRep2 HepG FOXA1 V101 2 broadPeak HepG2 FOXA1 6553 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 747 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 FOXA1 6553 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG FOXA1 V101 2\ subGroups view=Peaks factor=FOXA1SC6553 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Foxa1sc6553V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF944GJH K562 SMARCB1 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCB1 in K562 from ENCODE 3 (ENCFF944GJH) 1 747 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SMARCB1 in K562 from ENCODE 3 (ENCFF944GJH)\ parent encTfChipPk off\ shortLabel K562 SMARCB1\ subGroups cellType=K562 factor=SMARCB1\ track encTfChipPkENCFF944GJH\ wgEncodeSydhTfbsNb4MaxStdSig NB4 Max Std bigWig 1.000000 12391.000000 NB4 Max Standard ChIP-seq Signal from ENCODE/SYDH 2 747 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NB4 Max Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel NB4 Max Std\ subGroups view=Signal factor=MAX cellType=t3NB4 control=STD treatment=aNONE\ track wgEncodeSydhTfbsNb4MaxStdSig\ type bigWig 1.000000 12391.000000\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_ctss_fwd Tc:Mcf7ToHrg_06hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_forward 0 747 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep2.CNhs12665.13126-140G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13126-140G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_tpm_fwd Tc:Mcf7ToHrg_06hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_forward 1 747 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep2.CNhs12665.13126-140G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13126-140G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Foxa1sc6553V0416101RawRep2 HepG FOXA1 V101 2 bigWig 0.227945 147.936005 HepG2 FOXA1 6553 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 748 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 FOXA1 6553 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG FOXA1 V101 2\ subGroups view=RawSignal factor=FOXA1SC6553 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Foxa1sc6553V0416101RawRep2\ type bigWig 0.227945 147.936005\ encTfChipPkENCFF114PTZ K562 SMARCC2 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCC2 in K562 from ENCODE 3 (ENCFF114PTZ) 1 748 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SMARCC2 in K562 from ENCODE 3 (ENCFF114PTZ)\ parent encTfChipPk off\ shortLabel K562 SMARCC2\ subGroups cellType=K562 factor=SMARCC2\ track encTfChipPkENCFF114PTZ\ wgEncodeSydhTfbsNb4Pol2StdPk NB4 Pol2 Std narrowPeak NB4 Pol2 Standard ChIP-seq Peaks from ENCODE/SYDH 3 748 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NB4 Pol2 Standard ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel NB4 Pol2 Std\ subGroups view=Peaks factor=POL2 cellType=t3NB4 control=STD treatment=aNONE\ track wgEncodeSydhTfbsNb4Pol2StdPk\ type narrowPeak\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_ctss_rev Tc:Mcf7ToHrg_06hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_reverse 0 748 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep2.CNhs12665.13126-140G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13126-140G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_tpm_rev Tc:Mcf7ToHrg_06hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_reverse 1 748 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep2.CNhs12665.13126-140G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13126-140G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Foxa2sc6554V0416101PkRep1 HepG FOXA2 V101 1 broadPeak HepG2 FOXA2 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 749 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 FOXA2 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG FOXA2 V101 1\ subGroups view=Peaks factor=FOXA2SC6554 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Foxa2sc6554V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF622RBW K562 SMARCE1 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCE1 in K562 from ENCODE 3 (ENCFF622RBW) 1 749 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SMARCE1 in K562 from ENCODE 3 (ENCFF622RBW)\ parent encTfChipPk off\ shortLabel K562 SMARCE1\ subGroups cellType=K562 factor=SMARCE1\ track encTfChipPkENCFF622RBW\ wgEncodeSydhTfbsNb4Pol2StdSig NB4 Pol2 Std bigWig 0.000000 36878.398438 NB4 Pol2 Standard ChIP-seq Signal from ENCODE/SYDH 2 749 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NB4 Pol2 Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel NB4 Pol2 Std\ subGroups view=Signal factor=POL2 cellType=t3NB4 control=STD treatment=aNONE\ track wgEncodeSydhTfbsNb4Pol2StdSig\ type bigWig 0.000000 36878.398438\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_ctss_fwd Tc:Mcf7ToHrg_06hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_forward 0 749 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep3.CNhs12766.13192-141E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13192-141E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_tpm_fwd Tc:Mcf7ToHrg_06hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_forward 1 749 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep3.CNhs12766.13192-141E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13192-141E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Foxa2sc6554V0416101RawRep1 HepG FOXA2 V101 1 bigWig 0.254102 56.537701 HepG2 FOXA2 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 750 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 FOXA2 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG FOXA2 V101 1\ subGroups view=RawSignal factor=FOXA2SC6554 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Foxa2sc6554V0416101RawRep1\ type bigWig 0.254102 56.537701\ encTfChipPkENCFF041YQC K562 SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in K562 from ENCODE 3 (ENCFF041YQC) 1 750 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SMC3 in K562 from ENCODE 3 (ENCFF041YQC)\ parent encTfChipPk off\ shortLabel K562 SMC3\ subGroups cellType=K562 factor=SMC3\ track encTfChipPkENCFF041YQC\ wgEncodeSydhTfbsNb4InputStdSig NB4 Inpt Std bigWig 0.000000 10120.700195 NB4 Input Standard ChIP-seq Signal from ENCODE/SYDH 2 750 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NB4 Input Standard ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel NB4 Inpt Std\ subGroups view=Signal factor=ZZZINPUTSTD cellType=t3NB4 control=STD treatment=aNONE\ track wgEncodeSydhTfbsNb4InputStdSig\ type bigWig 0.000000 10120.700195\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_ctss_rev Tc:Mcf7ToHrg_06hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_reverse 0 750 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep3.CNhs12766.13192-141E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13192-141E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_tpm_rev Tc:Mcf7ToHrg_06hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_reverse 1 750 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep3.CNhs12766.13192-141E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13192-141E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Foxa2sc6554V0416101PkRep2 HepG FOXA2 V101 2 broadPeak HepG2 FOXA2 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 751 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 FOXA2 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG FOXA2 V101 2\ subGroups view=Peaks factor=FOXA2SC6554 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Foxa2sc6554V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF033KXY K562 SNRNP70 narrowPeak Transcription Factor ChIP-seq Peaks of SNRNP70 in K562 from ENCODE 3 (ENCFF033KXY) 1 751 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SNRNP70 in K562 from ENCODE 3 (ENCFF033KXY)\ parent encTfChipPk off\ shortLabel K562 SNRNP70\ subGroups cellType=K562 factor=SNRNP70\ track encTfChipPkENCFF033KXY\ wgEncodeSydhTfbsNt2d1Suz12UcdPk NT2D SZ12 UCD narrowPeak NT2-D1 SUZ12 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 751 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2-D1 SUZ12 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel NT2D SZ12 UCD\ subGroups view=Peaks factor=SUZ12 cellType=t3NT2D1 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsNt2d1Suz12UcdPk\ type narrowPeak\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_ctss_fwd Tc:Mcf7ToHrg_07hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_forward 0 751 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep1.CNhs12448.13061-139I1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13061-139I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_tpm_fwd Tc:Mcf7ToHrg_07hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_forward 1 751 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep1.CNhs12448.13061-139I1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13061-139I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Foxa2sc6554V0416101RawRep2 HepG FOXA2 V101 2 bigWig 0.124503 128.580994 HepG2 FOXA2 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 752 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 FOXA2 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG FOXA2 V101 2\ subGroups view=RawSignal factor=FOXA2SC6554 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Foxa2sc6554V0416101RawRep2\ type bigWig 0.124503 128.580994\ encTfChipPkENCFF241TBP K562 SOX6 narrowPeak Transcription Factor ChIP-seq Peaks of SOX6 in K562 from ENCODE 3 (ENCFF241TBP) 1 752 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SOX6 in K562 from ENCODE 3 (ENCFF241TBP)\ parent encTfChipPk off\ shortLabel K562 SOX6\ subGroups cellType=K562 factor=SOX6\ track encTfChipPkENCFF241TBP\ wgEncodeSydhTfbsNt2d1Suz12UcdSig NT2D SZ12 UCD bigWig 0.000000 15184.799805 NT2-D1 SUZ12 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 752 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NT2-D1 SUZ12 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel NT2D SZ12 UCD\ subGroups view=Signal factor=SUZ12 cellType=t3NT2D1 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsNt2d1Suz12UcdSig\ type bigWig 0.000000 15184.799805\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_ctss_rev Tc:Mcf7ToHrg_07hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_reverse 0 752 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep1.CNhs12448.13061-139I1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13061-139I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_tpm_rev Tc:Mcf7ToHrg_07hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_reverse 1 752 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep1.CNhs12448.13061-139I1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13061-139I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2GabpPcr2xPkRep1 HepG GABP PCR2 1 broadPeak HepG2 GABP PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 753 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 GABP PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG GABP PCR2 1\ subGroups view=Peaks factor=GABP cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2GabpPcr2xPkRep1\ type broadPeak\ encTfChipPkENCFF300XUA K562 SP1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in K562 from ENCODE 3 (ENCFF300XUA) 1 753 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SP1 in K562 from ENCODE 3 (ENCFF300XUA)\ parent encTfChipPk off\ shortLabel K562 SP1\ subGroups cellType=K562 factor=SP1\ track encTfChipPkENCFF300XUA\ wgEncodeSydhTfbsNt2d1Yy1UcdPk NT2D YY1 UCD narrowPeak NT2-D1 YY1 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 753 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2-D1 YY1 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel NT2D YY1 UCD\ subGroups view=Peaks factor=YY1 cellType=t3NT2D1 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsNt2d1Yy1UcdPk\ type narrowPeak\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_ctss_fwd Tc:Mcf7ToHrg_07hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_forward 0 753 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep2.CNhs12666.13127-140G4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13127-140G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_tpm_fwd Tc:Mcf7ToHrg_07hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_forward 1 753 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep2.CNhs12666.13127-140G4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13127-140G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2GabpPcr2xRawRep1 HepG GABP PCR2 1 bigWig 0.075071 32982.398438 HepG2 GABP PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 754 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 GABP PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG GABP PCR2 1\ subGroups view=RawSignal factor=GABP cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2GabpPcr2xRawRep1\ type bigWig 0.075071 32982.398438\ encTfChipPkENCFF985TSH K562 SREBF1 narrowPeak Transcription Factor ChIP-seq Peaks of SREBF1 in K562 from ENCODE 3 (ENCFF985TSH) 1 754 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SREBF1 in K562 from ENCODE 3 (ENCFF985TSH)\ parent encTfChipPk off\ shortLabel K562 SREBF1\ subGroups cellType=K562 factor=SREBF1\ track encTfChipPkENCFF985TSH\ wgEncodeSydhTfbsNt2d1Yy1UcdSig NT2D YY1 UCD bigWig 0.000000 13461.299805 NT2-D1 YY1 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 754 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NT2-D1 YY1 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel NT2D YY1 UCD\ subGroups view=Signal factor=YY1 cellType=t3NT2D1 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsNt2d1Yy1UcdSig\ type bigWig 0.000000 13461.299805\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_ctss_rev Tc:Mcf7ToHrg_07hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_reverse 0 754 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep2.CNhs12666.13127-140G4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13127-140G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_tpm_rev Tc:Mcf7ToHrg_07hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_reverse 1 754 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep2.CNhs12666.13127-140G4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13127-140G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2GabpPcr2xPkRep2 HepG GABP PCR2 2 broadPeak HepG2 GABP PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 755 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 GABP PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG GABP PCR2 2\ subGroups view=Peaks factor=GABP cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2GabpPcr2xPkRep2\ type broadPeak\ encTfChipPkENCFF059WVE K562 SRSF7 narrowPeak Transcription Factor ChIP-seq Peaks of SRSF7 in K562 from ENCODE 3 (ENCFF059WVE) 1 755 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SRSF7 in K562 from ENCODE 3 (ENCFF059WVE)\ parent encTfChipPk off\ shortLabel K562 SRSF7\ subGroups cellType=K562 factor=SRSF7\ track encTfChipPkENCFF059WVE\ wgEncodeSydhTfbsNt2d1Znf274UcdPk NT2D Z274 UCD narrowPeak NT2-D1 ZNF274 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 755 0 0 0 127 127 127 0 0 0 regulation 1 longLabel NT2-D1 ZNF274 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel NT2D Z274 UCD\ subGroups view=Peaks factor=ZNF274 cellType=t3NT2D1 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsNt2d1Znf274UcdPk\ type narrowPeak\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_ctss_fwd Tc:Mcf7ToHrg_07hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_forward 0 755 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep3.CNhs12767.13193-141E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13193-141E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_tpm_fwd Tc:Mcf7ToHrg_07hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_forward 1 755 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep3.CNhs12767.13193-141E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13193-141E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2GabpPcr2xRawRep2 HepG GABP PCR2 2 bigWig 0.100423 21089.900391 HepG2 GABP PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 756 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 GABP PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG GABP PCR2 2\ subGroups view=RawSignal factor=GABP cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2GabpPcr2xRawRep2\ type bigWig 0.100423 21089.900391\ encTfChipPkENCFF137IBM K562 SRSF9 narrowPeak Transcription Factor ChIP-seq Peaks of SRSF9 in K562 from ENCODE 3 (ENCFF137IBM) 1 756 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SRSF9 in K562 from ENCODE 3 (ENCFF137IBM)\ parent encTfChipPk off\ shortLabel K562 SRSF9\ subGroups cellType=K562 factor=SRSF9\ track encTfChipPkENCFF137IBM\ wgEncodeSydhTfbsNt2d1Znf274UcdSig NT2D Z274 UCD bigWig 1.000000 18753.000000 NT2-D1 ZNF274 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 756 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NT2-D1 ZNF274 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel NT2D Z274 UCD\ subGroups view=Signal factor=ZNF274 cellType=t3NT2D1 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsNt2d1Znf274UcdSig\ type bigWig 1.000000 18753.000000\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_ctss_rev Tc:Mcf7ToHrg_07hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_reverse 0 756 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep3.CNhs12767.13193-141E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13193-141E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_tpm_rev Tc:Mcf7ToHrg_07hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_reverse 1 756 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep3.CNhs12767.13193-141E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13193-141E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Hdac2sc6296V0416101PkRep1 HepG HDAC2 V101 1 broadPeak HepG2 HDAC2 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 757 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 HDAC2 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG HDAC2 V101 1\ subGroups view=Peaks factor=HDAC2SC6296 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Hdac2sc6296V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF498DOQ K562 STAT1 1 narrowPeak Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF498DOQ) 1 757 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF498DOQ)\ parent encTfChipPk off\ shortLabel K562 STAT1 1\ subGroups cellType=K562 factor=STAT1\ track encTfChipPkENCFF498DOQ\ wgEncodeSydhTfbsNt2d1InputUcdSig NT2D Inpt UCD bigWig 0.000000 20529.000000 NT2-D1 Input UC Davis ChIP-seq Signal from ENCODE/SYDH 2 757 0 0 0 127 127 127 0 0 0 regulation 0 longLabel NT2-D1 Input UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel NT2D Inpt UCD\ subGroups view=Signal factor=ZZZINPUTUCD cellType=t3NT2D1 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsNt2d1InputUcdSig\ type bigWig 0.000000 20529.000000\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_ctss_fwd Tc:Mcf7ToHrg_08hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_forward 0 757 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep1.CNhs12740.13062-139I2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13062-139I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_tpm_fwd Tc:Mcf7ToHrg_08hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_forward 1 757 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep1.CNhs12740.13062-139I2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13062-139I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Hdac2sc6296V0416101RawRep1 HepG HDAC2 V101 1 bigWig 0.140889 121.269997 HepG2 HDAC2 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 758 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 HDAC2 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG HDAC2 V101 1\ subGroups view=RawSignal factor=HDAC2SC6296 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Hdac2sc6296V0416101RawRep1\ type bigWig 0.140889 121.269997\ encTfChipPkENCFF254MPF K562 STAT1 2 narrowPeak Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF254MPF) 1 758 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF254MPF)\ parent encTfChipPk off\ shortLabel K562 STAT1 2\ subGroups cellType=K562 factor=STAT1\ track encTfChipPkENCFF254MPF\ wgEncodeSydhTfbsPanc1Tcf7l2UcdPk PANC TCF7L2 UCD narrowPeak PANC1 TCF7L2 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 758 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC1 TCF7L2 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel PANC TCF7L2 UCD\ subGroups view=Peaks factor=TCF7L2 cellType=t3PANC1 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsPanc1Tcf7l2UcdPk\ type narrowPeak\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_ctss_rev Tc:Mcf7ToHrg_08hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_reverse 0 758 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep1.CNhs12740.13062-139I2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13062-139I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_tpm_rev Tc:Mcf7ToHrg_08hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_reverse 1 758 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep1.CNhs12740.13062-139I2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13062-139I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Hdac2sc6296V0416101PkRep2 HepG HDAC2 V101 2 broadPeak HepG2 HDAC2 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 759 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 HDAC2 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG HDAC2 V101 2\ subGroups view=Peaks factor=HDAC2SC6296 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Hdac2sc6296V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF290HTJ K562 STAT1 3 narrowPeak Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF290HTJ) 1 759 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF290HTJ)\ parent encTfChipPk off\ shortLabel K562 STAT1 3\ subGroups cellType=K562 factor=STAT1\ track encTfChipPkENCFF290HTJ\ wgEncodeSydhTfbsPanc1Tcf7l2UcdSig PANC TCF7L2 UCD bigWig 1.000000 21870.000000 PANC1 TCF7L2 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 759 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC1 TCF7L2 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel PANC TCF7L2 UCD\ subGroups view=Signal factor=TCF7L2 cellType=t3PANC1 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsPanc1Tcf7l2UcdSig\ type bigWig 1.000000 21870.000000\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_ctss_fwd Tc:Mcf7ToHrg_08hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_forward 0 759 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep2.CNhs12667.13128-140G5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13128-140G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_tpm_fwd Tc:Mcf7ToHrg_08hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_forward 1 759 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep2.CNhs12667.13128-140G5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13128-140G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Hdac2sc6296V0416101RawRep2 HepG HDAC2 V101 2 bigWig 0.184255 118.522003 HepG2 HDAC2 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 760 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 HDAC2 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG HDAC2 V101 2\ subGroups view=RawSignal factor=HDAC2SC6296 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Hdac2sc6296V0416101RawRep2\ type bigWig 0.184255 118.522003\ encTfChipPkENCFF648NYF K562 STAT1 4 narrowPeak Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF648NYF) 1 760 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF648NYF)\ parent encTfChipPk off\ shortLabel K562 STAT1 4\ subGroups cellType=K562 factor=STAT1\ track encTfChipPkENCFF648NYF\ wgEncodeSydhTfbsPanc1InputUcdSig PANC Inpt UCD bigWig 1.000000 65207.000000 PANC1 Input UC Davis ChIP-seq Signal from ENCODE/SYDH 2 760 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC1 Input UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel PANC Inpt UCD\ subGroups view=Signal factor=ZZZINPUTUCD cellType=t3PANC1 control=UCD treatment=aNONE\ track wgEncodeSydhTfbsPanc1InputUcdSig\ type bigWig 1.000000 65207.000000\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_ctss_rev Tc:Mcf7ToHrg_08hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_reverse 0 760 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep2.CNhs12667.13128-140G5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13128-140G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_tpm_rev Tc:Mcf7ToHrg_08hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_reverse 1 760 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep2.CNhs12667.13128-140G5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13128-140G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Hnf4asc8987V0416101PkRep1 HepG HNF4A V101 1 broadPeak HepG2 HNF4A v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 761 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 HNF4A v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG HNF4A V101 1\ subGroups view=Peaks factor=HNF4ASC8987 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Hnf4asc8987V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF714VIT K562 STAT2 narrowPeak Transcription Factor ChIP-seq Peaks of STAT2 in K562 from ENCODE 3 (ENCFF714VIT) 1 761 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of STAT2 in K562 from ENCODE 3 (ENCFF714VIT)\ parent encTfChipPk off\ shortLabel K562 STAT2\ subGroups cellType=K562 factor=STAT2\ track encTfChipPkENCFF714VIT\ wgEncodeSydhTfbsPbdeGata1UcdPk PBDE GAT1 UCD narrowPeak PBDE GATA1 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 761 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PBDE GATA1 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel PBDE GAT1 UCD\ subGroups view=Peaks factor=GATA1 cellType=t3PBDE control=UCD treatment=aNONE\ track wgEncodeSydhTfbsPbdeGata1UcdPk\ type narrowPeak\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_ctss_fwd Tc:Mcf7ToHrg_08hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_forward 0 761 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep3.CNhs12768.13194-141E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13194-141E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_tpm_fwd Tc:Mcf7ToHrg_08hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_forward 1 761 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep3.CNhs12768.13194-141E8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13194-141E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Hnf4asc8987V0416101RawRep1 HepG HNF4A V101 1 bigWig 0.422290 325.691010 HepG2 HNF4A v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 762 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 HNF4A v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG HNF4A V101 1\ subGroups view=RawSignal factor=HNF4ASC8987 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Hnf4asc8987V0416101RawRep1\ type bigWig 0.422290 325.691010\ encTfChipPkENCFF696KPD K562 STAT5A narrowPeak Transcription Factor ChIP-seq Peaks of STAT5A in K562 from ENCODE 3 (ENCFF696KPD) 1 762 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of STAT5A in K562 from ENCODE 3 (ENCFF696KPD)\ parent encTfChipPk off\ shortLabel K562 STAT5A\ subGroups cellType=K562 factor=STAT5A\ track encTfChipPkENCFF696KPD\ wgEncodeSydhTfbsPbdeGata1UcdSig PBDE GAT1 UCD bigWig 1.000000 12180.000000 PBDE GATA1 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 762 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PBDE GATA1 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel PBDE GAT1 UCD\ subGroups view=Signal factor=GATA1 cellType=t3PBDE control=UCD treatment=aNONE\ track wgEncodeSydhTfbsPbdeGata1UcdSig\ type bigWig 1.000000 12180.000000\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_ctss_rev Tc:Mcf7ToHrg_08hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_reverse 0 762 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep3.CNhs12768.13194-141E8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13194-141E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_tpm_rev Tc:Mcf7ToHrg_08hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_reverse 1 762 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep3.CNhs12768.13194-141E8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13194-141E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Hnf4asc8987V0416101PkRep2 HepG HNF4A V101 2 broadPeak HepG2 HNF4A v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 763 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 HNF4A v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG HNF4A V101 2\ subGroups view=Peaks factor=HNF4ASC8987 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Hnf4asc8987V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF966MVC K562 SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in K562 from ENCODE 3 (ENCFF966MVC) 1 763 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in K562 from ENCODE 3 (ENCFF966MVC)\ parent encTfChipPk off\ shortLabel K562 SUZ12\ subGroups cellType=K562 factor=SUZ12\ track encTfChipPkENCFF966MVC\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_ctss_fwd MscAdipogenicInduction_00hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_forward 0 763 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep1.CNhs13337.13229-141I7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13229-141I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_tpm_fwd MscAdipogenicInduction_00hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_forward 1 763 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep1.CNhs13337.13229-141I7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13229-141I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsPbdePol2UcdPk PBDE Pol2 UCD narrowPeak PBDE Pol2 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 763 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PBDE Pol2 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel PBDE Pol2 UCD\ subGroups view=Peaks factor=POL2 cellType=t3PBDE control=UCD treatment=aNONE\ track wgEncodeSydhTfbsPbdePol2UcdPk\ type narrowPeak\ wgEncodeHaibTfbsHepg2Hnf4asc8987V0416101RawRep2 HepG HNF4A V101 2 bigWig 0.420062 350.752014 HepG2 HNF4A v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 764 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 HNF4A v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG HNF4A V101 2\ subGroups view=RawSignal factor=HNF4ASC8987 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Hnf4asc8987V0416101RawRep2\ type bigWig 0.420062 350.752014\ encTfChipPkENCFF617CAZ K562 TAF15 narrowPeak Transcription Factor ChIP-seq Peaks of TAF15 in K562 from ENCODE 3 (ENCFF617CAZ) 1 764 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TAF15 in K562 from ENCODE 3 (ENCFF617CAZ)\ parent encTfChipPk off\ shortLabel K562 TAF15\ subGroups cellType=K562 factor=TAF15\ track encTfChipPkENCFF617CAZ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_ctss_rev MscAdipogenicInduction_00hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_reverse 0 764 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep1.CNhs13337.13229-141I7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13229-141I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_tpm_rev MscAdipogenicInduction_00hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_reverse 1 764 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep1.CNhs13337.13229-141I7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13229-141I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsPbdePol2UcdSig PBDE Pol2 UCD bigWig 1.000000 106654.000000 PBDE Pol2 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 764 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PBDE Pol2 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel PBDE Pol2 UCD\ subGroups view=Signal factor=POL2 cellType=t3PBDE control=UCD treatment=aNONE\ track wgEncodeSydhTfbsPbdePol2UcdSig\ type bigWig 1.000000 106654.000000\ wgEncodeHaibTfbsHepg2Hnf4gsc6558V0416101PkRep1 HepG HNF4G V101 1 broadPeak HepG2 HNF4G v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 765 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 HNF4G v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG HNF4G V101 1\ subGroups view=Peaks factor=HNF4GSC6558 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Hnf4gsc6558V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF034CQR K562 TAF7 narrowPeak Transcription Factor ChIP-seq Peaks of TAF7 in K562 from ENCODE 3 (ENCFF034CQR) 1 765 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TAF7 in K562 from ENCODE 3 (ENCFF034CQR)\ parent encTfChipPk off\ shortLabel K562 TAF7\ subGroups cellType=K562 factor=TAF7\ track encTfChipPkENCFF034CQR\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_ctss_fwd MscAdipogenicInduction_00hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_forward 0 765 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep2.CNhs13420.13230-141I8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13230-141I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_tpm_fwd MscAdipogenicInduction_00hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_forward 1 765 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep2.CNhs13420.13230-141I8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13230-141I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsPbdeInputUcdSig PBDE Inpt UCD bigWig 1.000000 29040.000000 PBDE Input UC Davis ChIP-seq Signal from ENCODE/SYDH 2 765 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PBDE Input UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel PBDE Inpt UCD\ subGroups view=Signal factor=ZZZINPUTUCD cellType=t3PBDE control=UCD treatment=aNONE\ track wgEncodeSydhTfbsPbdeInputUcdSig\ type bigWig 1.000000 29040.000000\ wgEncodeHaibTfbsHepg2Hnf4gsc6558V0416101RawRep1 HepG HNF4G V101 1 bigWig 0.150012 130.809998 HepG2 HNF4G v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 766 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 HNF4G v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG HNF4G V101 1\ subGroups view=RawSignal factor=HNF4GSC6558 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Hnf4gsc6558V0416101RawRep1\ type bigWig 0.150012 130.809998\ encTfChipPkENCFF785HXY K562 TAF9B narrowPeak Transcription Factor ChIP-seq Peaks of TAF9B in K562 from ENCODE 3 (ENCFF785HXY) 1 766 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TAF9B in K562 from ENCODE 3 (ENCFF785HXY)\ parent encTfChipPk off\ shortLabel K562 TAF9B\ subGroups cellType=K562 factor=TAF9B\ track encTfChipPkENCFF785HXY\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_ctss_rev MscAdipogenicInduction_00hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_reverse 0 766 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep2.CNhs13420.13230-141I8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13230-141I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_tpm_rev MscAdipogenicInduction_00hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_reverse 1 766 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep2.CNhs13420.13230-141I8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13230-141I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsPbdefetalGata1UcdPk PBDF GAT1 UCD narrowPeak PBDE-Fetal GATA1 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 766 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PBDE-Fetal GATA1 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel PBDF GAT1 UCD\ subGroups view=Peaks factor=GATA1 cellType=t3PBDEFETAL control=UCD treatment=aNONE\ track wgEncodeSydhTfbsPbdefetalGata1UcdPk\ type narrowPeak\ wgEncodeHaibTfbsHepg2Hnf4gsc6558V0416101PkRep2 HepG HNF4G V101 2 broadPeak HepG2 HNF4G v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 767 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 HNF4G v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG HNF4G V101 2\ subGroups view=Peaks factor=HNF4GSC6558 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Hnf4gsc6558V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF482CEV K562 TAL1 1 narrowPeak Transcription Factor ChIP-seq Peaks of TAL1 in K562 from ENCODE 3 (ENCFF482CEV) 1 767 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TAL1 in K562 from ENCODE 3 (ENCFF482CEV)\ parent encTfChipPk off\ shortLabel K562 TAL1 1\ subGroups cellType=K562 factor=TAL1\ track encTfChipPkENCFF482CEV\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_ctss_fwd MscAdipogenicInduction_00hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_forward 0 767 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep3.CNhs13421.13231-141I9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13231-141I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_tpm_fwd MscAdipogenicInduction_00hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_forward 1 767 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep3.CNhs13421.13231-141I9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13231-141I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsPbdefetalGata1UcdSig PBDF GAT1 UCD bigWig 1.000000 23239.000000 PBDE-Fetal GATA1 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 767 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PBDE-Fetal GATA1 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel PBDF GAT1 UCD\ subGroups view=Signal factor=GATA1 cellType=t3PBDEFETAL control=UCD treatment=aNONE\ track wgEncodeSydhTfbsPbdefetalGata1UcdSig\ type bigWig 1.000000 23239.000000\ wgEncodeHaibTfbsHepg2Hnf4gsc6558V0416101RawRep2 HepG HNF4G V101 2 bigWig 0.175353 205.294006 HepG2 HNF4G v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 768 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 HNF4G v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG HNF4G V101 2\ subGroups view=RawSignal factor=HNF4GSC6558 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Hnf4gsc6558V0416101RawRep2\ type bigWig 0.175353 205.294006\ encTfChipPkENCFF284LRP K562 TAL1 2 narrowPeak Transcription Factor ChIP-seq Peaks of TAL1 in K562 from ENCODE 3 (ENCFF284LRP) 1 768 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TAL1 in K562 from ENCODE 3 (ENCFF284LRP)\ parent encTfChipPk off\ shortLabel K562 TAL1 2\ subGroups cellType=K562 factor=TAL1\ track encTfChipPkENCFF284LRP\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_ctss_rev MscAdipogenicInduction_00hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_reverse 0 768 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep3.CNhs13421.13231-141I9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13231-141I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_tpm_rev MscAdipogenicInduction_00hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_reverse 1 768 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep3.CNhs13421.13231-141I9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13231-141I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsPbdefetalInputUcdSig PBDF Inpt UCD bigWig 1.000000 10659.000000 PBDE-Fetal Input UC Davis ChIP-seq Signal from ENCODE/SYDH 2 768 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PBDE-Fetal Input UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel PBDF Inpt UCD\ subGroups view=Signal factor=ZZZINPUTUCD cellType=t3PBDEFETAL control=UCD treatment=aNONE\ track wgEncodeSydhTfbsPbdefetalInputUcdSig\ type bigWig 1.000000 10659.000000\ wgEncodeHaibTfbsHepg2JundPcr1xPkRep1 HepG JunD PCR1 1 broadPeak HepG2 JunD PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 769 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 JunD PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG JunD PCR1 1\ subGroups view=Peaks factor=JUND cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2JundPcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF048OBR K562 TBL1XR1 1 narrowPeak Transcription Factor ChIP-seq Peaks of TBL1XR1 in K562 from ENCODE 3 (ENCFF048OBR) 1 769 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TBL1XR1 in K562 from ENCODE 3 (ENCFF048OBR)\ parent encTfChipPk off\ shortLabel K562 TBL1XR1 1\ subGroups cellType=K562 factor=TBL1XR1\ track encTfChipPkENCFF048OBR\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_ctss_fwd MscAdipogenicInduction_00hr15minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_forward 0 769 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep1.CNhs13422.13232-142A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13232-142A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_tpm_fwd MscAdipogenicInduction_00hr15minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_forward 1 769 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep1.CNhs13422.13232-142A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13232-142A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsRajiPol2UcdPk Raji Pol2 UCD narrowPeak Raji Pol2 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 769 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Raji Pol2 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel Raji Pol2 UCD\ subGroups view=Peaks factor=POL2 cellType=t3RAJI control=UCD treatment=aNONE\ track wgEncodeSydhTfbsRajiPol2UcdPk\ type narrowPeak\ wgEncodeHaibTfbsHepg2JundPcr1xRawRep1 HepG JunD PCR1 1 bigWig 0.209998 327.648987 HepG2 JunD PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 770 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 JunD PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG JunD PCR1 1\ subGroups view=RawSignal factor=JUND cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2JundPcr1xRawRep1\ type bigWig 0.209998 327.648987\ encTfChipPkENCFF626MVT K562 TBL1XR1 2 narrowPeak Transcription Factor ChIP-seq Peaks of TBL1XR1 in K562 from ENCODE 3 (ENCFF626MVT) 1 770 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TBL1XR1 in K562 from ENCODE 3 (ENCFF626MVT)\ parent encTfChipPk off\ shortLabel K562 TBL1XR1 2\ subGroups cellType=K562 factor=TBL1XR1\ track encTfChipPkENCFF626MVT\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_ctss_rev MscAdipogenicInduction_00hr15minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_reverse 0 770 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep1.CNhs13422.13232-142A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13232-142A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_tpm_rev MscAdipogenicInduction_00hr15minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_reverse 1 770 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep1.CNhs13422.13232-142A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13232-142A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsRajiPol2UcdSig Raji Pol2 UCD bigWig 0.000000 37915.300781 Raji Pol2 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 770 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Raji Pol2 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel Raji Pol2 UCD\ subGroups view=Signal factor=POL2 cellType=t3RAJI control=UCD treatment=aNONE\ track wgEncodeSydhTfbsRajiPol2UcdSig\ type bigWig 0.000000 37915.300781\ wgEncodeHaibTfbsHepg2JundPcr1xPkRep2 HepG JunD PCR1 2 broadPeak HepG2 JunD PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 771 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 JunD PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG JunD PCR1 2\ subGroups view=Peaks factor=JUND cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2JundPcr1xPkRep2\ type broadPeak\ encTfChipPkENCFF380FJL K562 TBP narrowPeak Transcription Factor ChIP-seq Peaks of TBP in K562 from ENCODE 3 (ENCFF380FJL) 1 771 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TBP in K562 from ENCODE 3 (ENCFF380FJL)\ parent encTfChipPk off\ shortLabel K562 TBP\ subGroups cellType=K562 factor=TBP\ track encTfChipPkENCFF380FJL\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_ctss_fwd MscAdipogenicInduction_00hr15minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_forward 0 771 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep2.CNhs13423.13233-142A2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13233-142A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_tpm_fwd MscAdipogenicInduction_00hr15minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_forward 1 771 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep2.CNhs13423.13233-142A2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13233-142A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsRajiInputUcdSig Raji Inpt UCD bigWig 0.000000 8754.400391 Raji Input UC Davis ChIP-seq Signal from ENCODE/SYDH 2 771 0 0 0 127 127 127 0 0 0 regulation 0 longLabel Raji Input UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel Raji Inpt UCD\ subGroups view=Signal factor=ZZZINPUTUCD cellType=t3RAJI control=UCD treatment=aNONE\ track wgEncodeSydhTfbsRajiInputUcdSig\ type bigWig 0.000000 8754.400391\ wgEncodeHaibTfbsHepg2JundPcr1xRawRep2 HepG JunD PCR1 2 bigWig 0.112204 242.809006 HepG2 JunD PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 772 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 JunD PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG JunD PCR1 2\ subGroups view=RawSignal factor=JUND cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2JundPcr1xRawRep2\ type bigWig 0.112204 242.809006\ encTfChipPkENCFF242IWJ K562 TCF12 1 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in K562 from ENCODE 3 (ENCFF242IWJ) 1 772 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in K562 from ENCODE 3 (ENCFF242IWJ)\ parent encTfChipPk off\ shortLabel K562 TCF12 1\ subGroups cellType=K562 factor=TCF12\ track encTfChipPkENCFF242IWJ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_ctss_rev MscAdipogenicInduction_00hr15minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_reverse 0 772 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep2.CNhs13423.13233-142A2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13233-142A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_tpm_rev MscAdipogenicInduction_00hr15minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_reverse 1 772 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep2.CNhs13423.13233-142A2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13233-142A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsShsy5yGata2UcdPk SHSY GAT2 UCD narrowPeak SH-SY5Y GATA2 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 772 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SH-SY5Y GATA2 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel SHSY GAT2 UCD\ subGroups view=Peaks factor=GATA2 cellType=t3SHSY5Y control=UCD treatment=aNONE\ track wgEncodeSydhTfbsShsy5yGata2UcdPk\ type narrowPeak\ wgEncodeHaibTfbsHepg2MaxV0422111PkRep1 HepG Max V11 1 broadPeak HepG2 Max v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 773 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 Max v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG Max V11 1\ subGroups view=Peaks factor=MAX cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2MaxV0422111PkRep1\ type broadPeak\ encTfChipPkENCFF493TZM K562 TCF12 2 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in K562 from ENCODE 3 (ENCFF493TZM) 1 773 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in K562 from ENCODE 3 (ENCFF493TZM)\ parent encTfChipPk off\ shortLabel K562 TCF12 2\ subGroups cellType=K562 factor=TCF12\ track encTfChipPkENCFF493TZM\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_ctss_fwd MscAdipogenicInduction_00hr15minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_forward 0 773 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep3.CNhs13424.13234-142A3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13234-142A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_tpm_fwd MscAdipogenicInduction_00hr15minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_forward 1 773 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep3.CNhs13424.13234-142A3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13234-142A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsShsy5yGata2UcdSig SHSY GAT2 UCD bigWig 1.000000 20271.000000 SH-SY5Y GATA2 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 773 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SH-SY5Y GATA2 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel SHSY GAT2 UCD\ subGroups view=Signal factor=GATA2 cellType=t3SHSY5Y control=UCD treatment=aNONE\ track wgEncodeSydhTfbsShsy5yGata2UcdSig\ type bigWig 1.000000 20271.000000\ wgEncodeHaibTfbsHepg2MaxV0422111RawRep1 HepG Max V11 1 bigWig 1.000000 9065.000000 HepG2 Max v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 774 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Max v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG Max V11 1\ subGroups view=RawSignal factor=MAX cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2MaxV0422111RawRep1\ type bigWig 1.000000 9065.000000\ encTfChipPkENCFF249EZR K562 TCF7 narrowPeak Transcription Factor ChIP-seq Peaks of TCF7 in K562 from ENCODE 3 (ENCFF249EZR) 1 774 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TCF7 in K562 from ENCODE 3 (ENCFF249EZR)\ parent encTfChipPk off\ shortLabel K562 TCF7\ subGroups cellType=K562 factor=TCF7\ track encTfChipPkENCFF249EZR\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_ctss_rev MscAdipogenicInduction_00hr15minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_reverse 0 774 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep3.CNhs13424.13234-142A3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13234-142A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_tpm_rev MscAdipogenicInduction_00hr15minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_reverse 1 774 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep3.CNhs13424.13234-142A3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13234-142A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsShsy5yGata3sc269sc269UcdPk SHSY GAT3 UCD narrowPeak SH-SY5Y GATA3 SC269 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 774 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SH-SY5Y GATA3 SC269 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel SHSY GAT3 UCD\ subGroups view=Peaks factor=GATA3SC269 cellType=t3SHSY5Y control=UCD treatment=aNONE\ track wgEncodeSydhTfbsShsy5yGata3sc269sc269UcdPk\ type narrowPeak\ wgEncodeHaibTfbsHepg2MaxV0422111PkRep2 HepG Max V11 2 broadPeak HepG2 Max v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 775 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 Max v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG Max V11 2\ subGroups view=Peaks factor=MAX cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2MaxV0422111PkRep2\ type broadPeak\ encTfChipPkENCFF312RFN K562 TCF7L2 narrowPeak Transcription Factor ChIP-seq Peaks of TCF7L2 in K562 from ENCODE 3 (ENCFF312RFN) 1 775 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TCF7L2 in K562 from ENCODE 3 (ENCFF312RFN)\ parent encTfChipPk off\ shortLabel K562 TCF7L2\ subGroups cellType=K562 factor=TCF7L2\ track encTfChipPkENCFF312RFN\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_ctss_fwd MscAdipogenicInduction_00hr30minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_forward 0 775 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep1.CNhs13425.13235-142A4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13235-142A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_tpm_fwd MscAdipogenicInduction_00hr30minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_forward 1 775 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep1.CNhs13425.13235-142A4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13235-142A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsShsy5yGata3sc269sc269UcdSig SHSY GAT3 UCD bigWig 1.000000 22110.000000 SH-SY5Y GATA3 SC269 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 775 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SH-SY5Y GATA3 SC269 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel SHSY GAT3 UCD\ subGroups view=Signal factor=GATA3SC269 cellType=t3SHSY5Y control=UCD treatment=aNONE\ track wgEncodeSydhTfbsShsy5yGata3sc269sc269UcdSig\ type bigWig 1.000000 22110.000000\ wgEncodeHaibTfbsHepg2MaxV0422111RawRep2 HepG Max V11 2 bigWig 1.000000 9112.000000 HepG2 Max v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 776 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Max v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG Max V11 2\ subGroups view=RawSignal factor=MAX cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2MaxV0422111RawRep2\ type bigWig 1.000000 9112.000000\ encTfChipPkENCFF209MQX K562 TEAD4 narrowPeak Transcription Factor ChIP-seq Peaks of TEAD4 in K562 from ENCODE 3 (ENCFF209MQX) 1 776 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TEAD4 in K562 from ENCODE 3 (ENCFF209MQX)\ parent encTfChipPk off\ shortLabel K562 TEAD4\ subGroups cellType=K562 factor=TEAD4\ track encTfChipPkENCFF209MQX\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_ctss_rev MscAdipogenicInduction_00hr30minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_reverse 0 776 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep1.CNhs13425.13235-142A4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13235-142A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_tpm_rev MscAdipogenicInduction_00hr30minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_reverse 1 776 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep1.CNhs13425.13235-142A4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13235-142A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsShsy5yInputUcdSig SHSY Inpt UCD bigWig 1.000000 9027.000000 SH-SY5Y Input UC Davis ChIP-seq Signal from ENCODE/SYDH 2 776 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SH-SY5Y Input UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel SHSY Inpt UCD\ subGroups view=Signal factor=ZZZINPUTUCD cellType=t3SHSY5Y control=UCD treatment=aNONE\ track wgEncodeSydhTfbsShsy5yInputUcdSig\ type bigWig 1.000000 9027.000000\ wgEncodeHaibTfbsHepg2Mbd4sc271530V0422111PkRep1 HepG MBD4 V11 1 broadPeak HepG2 MBD4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 777 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 MBD4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG MBD4 V11 1\ subGroups view=Peaks factor=MBD4SC271530 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Mbd4sc271530V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF641LJY K562 THAP1 narrowPeak Transcription Factor ChIP-seq Peaks of THAP1 in K562 from ENCODE 3 (ENCFF641LJY) 1 777 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of THAP1 in K562 from ENCODE 3 (ENCFF641LJY)\ parent encTfChipPk off\ shortLabel K562 THAP1\ subGroups cellType=K562 factor=THAP1\ track encTfChipPkENCFF641LJY\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_ctss_fwd MscAdipogenicInduction_00hr30minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_forward 0 777 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep2.CNhs13426.13236-142A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13236-142A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_tpm_fwd MscAdipogenicInduction_00hr30minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_forward 1 777 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep2.CNhs13426.13236-142A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13236-142A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsU2osKap1UcdPk U2OS KAP1 UCD narrowPeak U2OS KAP1 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 777 0 0 0 127 127 127 0 0 0 regulation 1 longLabel U2OS KAP1 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel U2OS KAP1 UCD\ subGroups view=Peaks factor=KAP1 cellType=t3U2OS control=UCD treatment=aNONE\ track wgEncodeSydhTfbsU2osKap1UcdPk\ type narrowPeak\ wgEncodeHaibTfbsHepg2Mbd4sc271530V0422111RawRep1 HepG MBD4 V11 1 bigWig 0.144811 565.125000 HepG2 MBD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 778 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 MBD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG MBD4 V11 1\ subGroups view=RawSignal factor=MBD4SC271530 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Mbd4sc271530V0422111RawRep1\ type bigWig 0.144811 565.125000\ encTfChipPkENCFF671BFH K562 THRA narrowPeak Transcription Factor ChIP-seq Peaks of THRA in K562 from ENCODE 3 (ENCFF671BFH) 1 778 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of THRA in K562 from ENCODE 3 (ENCFF671BFH)\ parent encTfChipPk off\ shortLabel K562 THRA\ subGroups cellType=K562 factor=THRA\ track encTfChipPkENCFF671BFH\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_ctss_rev MscAdipogenicInduction_00hr30minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_reverse 0 778 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep2.CNhs13426.13236-142A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13236-142A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_tpm_rev MscAdipogenicInduction_00hr30minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_reverse 1 778 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep2.CNhs13426.13236-142A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13236-142A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsU2osKap1UcdSig U2OS KAP1 UCD bigWig 1.000000 22948.000000 U2OS KAP1 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 778 0 0 0 127 127 127 0 0 0 regulation 0 longLabel U2OS KAP1 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel U2OS KAP1 UCD\ subGroups view=Signal factor=KAP1 cellType=t3U2OS control=UCD treatment=aNONE\ track wgEncodeSydhTfbsU2osKap1UcdSig\ type bigWig 1.000000 22948.000000\ wgEncodeHaibTfbsHepg2Mbd4sc271530V0422111PkRep2 HepG MBD4 V11 2 broadPeak HepG2 MBD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 779 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 MBD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG MBD4 V11 2\ subGroups view=Peaks factor=MBD4SC271530 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Mbd4sc271530V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF049CRW K562 TRIM24 1 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM24 in K562 from ENCODE 3 (ENCFF049CRW) 1 779 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TRIM24 in K562 from ENCODE 3 (ENCFF049CRW)\ parent encTfChipPk off\ shortLabel K562 TRIM24 1\ subGroups cellType=K562 factor=TRIM24\ track encTfChipPkENCFF049CRW\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_ctss_fwd MscAdipogenicInduction_00hr45minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_forward 0 779 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep1.CNhs13428.13238-142A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13238-142A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_tpm_fwd MscAdipogenicInduction_00hr45minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_forward 1 779 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep1.CNhs13428.13238-142A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13238-142A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsU2osSetdb1UcdPk U2OS STDB UCD narrowPeak U2OS SETDB1 UC Davis ChIP-seq Peaks from ENCODE/SYDH 3 779 0 0 0 127 127 127 0 0 0 regulation 1 longLabel U2OS SETDB1 UC Davis ChIP-seq Peaks from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewPeaks off\ shortLabel U2OS STDB UCD\ subGroups view=Peaks factor=SETDB1 cellType=t3U2OS control=UCD treatment=aNONE\ track wgEncodeSydhTfbsU2osSetdb1UcdPk\ type narrowPeak\ wgEncodeHaibTfbsHepg2Mbd4sc271530V0422111RawRep2 HepG MBD4 V11 2 bigWig 0.120725 143.602005 HepG2 MBD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 780 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 MBD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG MBD4 V11 2\ subGroups view=RawSignal factor=MBD4SC271530 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Mbd4sc271530V0422111RawRep2\ type bigWig 0.120725 143.602005\ encTfChipPkENCFF646VQW K562 TRIM24 2 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM24 in K562 from ENCODE 3 (ENCFF646VQW) 1 780 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TRIM24 in K562 from ENCODE 3 (ENCFF646VQW)\ parent encTfChipPk off\ shortLabel K562 TRIM24 2\ subGroups cellType=K562 factor=TRIM24\ track encTfChipPkENCFF646VQW\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_ctss_rev MscAdipogenicInduction_00hr45minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_reverse 0 780 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep1.CNhs13428.13238-142A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13238-142A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_tpm_rev MscAdipogenicInduction_00hr45minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_reverse 1 780 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep1.CNhs13428.13238-142A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13238-142A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsU2osSetdb1UcdSig U2OS STDB UCD bigWig 0.000000 10270.500000 U2OS SETDB1 UC Davis ChIP-seq Signal from ENCODE/SYDH 2 780 0 0 0 127 127 127 0 0 0 regulation 0 longLabel U2OS SETDB1 UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel U2OS STDB UCD\ subGroups view=Signal factor=SETDB1 cellType=t3U2OS control=UCD treatment=aNONE\ track wgEncodeSydhTfbsU2osSetdb1UcdSig\ type bigWig 0.000000 10270.500000\ wgEncodeHaibTfbsHepg2Mybl2sc81192V0422111PkRep1 HepG MYBL2 V11 1 broadPeak HepG2 MYBL2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 781 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 MYBL2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG MYBL2 V11 1\ subGroups view=Peaks factor=MYBL2SC81192 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Mybl2sc81192V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF164HLQ K562 TRIM28 1 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF164HLQ) 1 781 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF164HLQ)\ parent encTfChipPk off\ shortLabel K562 TRIM28 1\ subGroups cellType=K562 factor=TRIM28\ track encTfChipPkENCFF164HLQ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_ctss_fwd MscAdipogenicInduction_00hr45minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_forward 0 781 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep2.CNhs13429.13239-142A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13239-142A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_tpm_fwd MscAdipogenicInduction_00hr45minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_forward 1 781 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep2.CNhs13429.13239-142A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13239-142A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8\ urlLabel FANTOM5 Details:\ wgEncodeSydhTfbsU2osInputUcdSig U2OS Inpt UCD bigWig 0.000000 11117.500000 U2OS Input UC Davis ChIP-seq Signal from ENCODE/SYDH 2 781 0 0 0 127 127 127 0 0 0 regulation 0 longLabel U2OS Input UC Davis ChIP-seq Signal from ENCODE/SYDH\ parent wgEncodeSydhTfbsViewSignal off\ shortLabel U2OS Inpt UCD\ subGroups view=Signal factor=ZZZINPUTUCD cellType=t3U2OS control=UCD treatment=aNONE\ track wgEncodeSydhTfbsU2osInputUcdSig\ type bigWig 0.000000 11117.500000\ wgEncodeHaibTfbsHepg2Mybl2sc81192V0422111RawRep1 HepG MYBL2 V11 1 bigWig 0.105435 125.782997 HepG2 MYBL2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 782 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 MYBL2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG MYBL2 V11 1\ subGroups view=RawSignal factor=MYBL2SC81192 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Mybl2sc81192V0422111RawRep1\ type bigWig 0.105435 125.782997\ encTfChipPkENCFF858QMI K562 TRIM28 2 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF858QMI) 1 782 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF858QMI)\ parent encTfChipPk off\ shortLabel K562 TRIM28 2\ subGroups cellType=K562 factor=TRIM28\ track encTfChipPkENCFF858QMI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_ctss_rev MscAdipogenicInduction_00hr45minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_reverse 0 782 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep2.CNhs13429.13239-142A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13239-142A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_tpm_rev MscAdipogenicInduction_00hr45minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_reverse 1 782 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep2.CNhs13429.13239-142A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13239-142A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Mybl2sc81192V0422111PkRep2 HepG MYBL2 V11 2 broadPeak HepG2 MYBL2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 783 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 MYBL2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG MYBL2 V11 2\ subGroups view=Peaks factor=MYBL2SC81192 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Mybl2sc81192V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF591BIT K562 TRIM28 3 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF591BIT) 1 783 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF591BIT)\ parent encTfChipPk off\ shortLabel K562 TRIM28 3\ subGroups cellType=K562 factor=TRIM28\ track encTfChipPkENCFF591BIT\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_ctss_fwd MscAdipogenicInduction_00hr45minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_forward 0 783 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep3.CNhs13430.13240-142A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13240-142A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_tpm_fwd MscAdipogenicInduction_00hr45minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_forward 1 783 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep3.CNhs13430.13240-142A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13240-142A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Mybl2sc81192V0422111RawRep2 HepG MYBL2 V11 2 bigWig 0.125000 390.812012 HepG2 MYBL2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 784 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 MYBL2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG MYBL2 V11 2\ subGroups view=RawSignal factor=MYBL2SC81192 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Mybl2sc81192V0422111RawRep2\ type bigWig 0.125000 390.812012\ encTfChipPkENCFF561IZB K562 TRIP13 narrowPeak Transcription Factor ChIP-seq Peaks of TRIP13 in K562 from ENCODE 3 (ENCFF561IZB) 1 784 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of TRIP13 in K562 from ENCODE 3 (ENCFF561IZB)\ parent encTfChipPk off\ shortLabel K562 TRIP13\ subGroups cellType=K562 factor=TRIP13\ track encTfChipPkENCFF561IZB\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_ctss_rev MscAdipogenicInduction_00hr45minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_reverse 0 784 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep3.CNhs13430.13240-142A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13240-142A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_tpm_rev MscAdipogenicInduction_00hr45minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_reverse 1 784 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep3.CNhs13430.13240-142A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13240-142A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Nficsc81335V0422111PkRep1 HepG NFIC V11 1 broadPeak HepG2 NFIC v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 785 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 NFIC v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG NFIC V11 1\ subGroups view=Peaks factor=NFICSC81335 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Nficsc81335V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF730URE K562 U2AF1 narrowPeak Transcription Factor ChIP-seq Peaks of U2AF1 in K562 from ENCODE 3 (ENCFF730URE) 1 785 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of U2AF1 in K562 from ENCODE 3 (ENCFF730URE)\ parent encTfChipPk off\ shortLabel K562 U2AF1\ subGroups cellType=K562 factor=U2AF1\ track encTfChipPkENCFF730URE\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_ctss_fwd MscAdipogenicInduction_01hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_forward 0 785 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep1.CNhs13431.13241-142B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13241-142B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_tpm_fwd MscAdipogenicInduction_01hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_forward 1 785 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep1.CNhs13431.13241-142B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13241-142B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Nficsc81335V0422111RawRep1 HepG NFIC V11 1 bigWig 0.148403 192.442001 HepG2 NFIC v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 786 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 NFIC v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG NFIC V11 1\ subGroups view=RawSignal factor=NFICSC81335 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Nficsc81335V0422111RawRep1\ type bigWig 0.148403 192.442001\ encTfChipPkENCFF398EQF K562 U2AF2 narrowPeak Transcription Factor ChIP-seq Peaks of U2AF2 in K562 from ENCODE 3 (ENCFF398EQF) 1 786 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of U2AF2 in K562 from ENCODE 3 (ENCFF398EQF)\ parent encTfChipPk off\ shortLabel K562 U2AF2\ subGroups cellType=K562 factor=U2AF2\ track encTfChipPkENCFF398EQF\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_ctss_rev MscAdipogenicInduction_01hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_reverse 0 786 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep1.CNhs13431.13241-142B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13241-142B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_tpm_rev MscAdipogenicInduction_01hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_reverse 1 786 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep1.CNhs13431.13241-142B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13241-142B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Nficsc81335V0422111PkRep2 HepG NFIC V11 2 broadPeak HepG2 NFIC v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 787 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 NFIC v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG NFIC V11 2\ subGroups view=Peaks factor=NFICSC81335 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Nficsc81335V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF938IOJ K562 UBTF 1 narrowPeak Transcription Factor ChIP-seq Peaks of UBTF in K562 from ENCODE 3 (ENCFF938IOJ) 1 787 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of UBTF in K562 from ENCODE 3 (ENCFF938IOJ)\ parent encTfChipPk off\ shortLabel K562 UBTF 1\ subGroups cellType=K562 factor=UBTF\ track encTfChipPkENCFF938IOJ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_ctss_fwd MscAdipogenicInduction_01hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_forward 0 787 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep2.CNhs13432.13242-142B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13242-142B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_tpm_fwd MscAdipogenicInduction_01hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_forward 1 787 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep2.CNhs13432.13242-142B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13242-142B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Nficsc81335V0422111RawRep2 HepG NFIC V11 2 bigWig 0.161799 373.916992 HepG2 NFIC v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 788 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 NFIC v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG NFIC V11 2\ subGroups view=RawSignal factor=NFICSC81335 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Nficsc81335V0422111RawRep2\ type bigWig 0.161799 373.916992\ encTfChipPkENCFF671DOL K562 UBTF 2 narrowPeak Transcription Factor ChIP-seq Peaks of UBTF in K562 from ENCODE 3 (ENCFF671DOL) 1 788 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of UBTF in K562 from ENCODE 3 (ENCFF671DOL)\ parent encTfChipPk off\ shortLabel K562 UBTF 2\ subGroups cellType=K562 factor=UBTF\ track encTfChipPkENCFF671DOL\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_ctss_rev MscAdipogenicInduction_01hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_reverse 0 788 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep2.CNhs13432.13242-142B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13242-142B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_tpm_rev MscAdipogenicInduction_01hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_reverse 1 788 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep2.CNhs13432.13242-142B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13242-142B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Nr2f2sc271940V0422111PkRep1 HepG NR2F2 V11 1 broadPeak HepG2 NR2F2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 789 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 NR2F2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG NR2F2 V11 1\ subGroups view=Peaks factor=NR2F2SC271940 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Nr2f2sc271940V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF150VTD K562 USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in K562 from ENCODE 3 (ENCFF150VTD) 1 789 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of USF2 in K562 from ENCODE 3 (ENCFF150VTD)\ parent encTfChipPk off\ shortLabel K562 USF2\ subGroups cellType=K562 factor=USF2\ track encTfChipPkENCFF150VTD\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_ctss_fwd MscAdipogenicInduction_01hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_forward 0 789 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep3.CNhs13433.13243-142B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13243-142B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_tpm_fwd MscAdipogenicInduction_01hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_forward 1 789 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep3.CNhs13433.13243-142B3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13243-142B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Nr2f2sc271940V0422111RawRep1 HepG NR2F2 V11 1 bigWig 1.000000 12157.000000 HepG2 NR2F2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 790 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 NR2F2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG NR2F2 V11 1\ subGroups view=RawSignal factor=NR2F2SC271940 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Nr2f2sc271940V0422111RawRep1\ type bigWig 1.000000 12157.000000\ encTfChipPkENCFF119SZQ K562 WHSC1 narrowPeak Transcription Factor ChIP-seq Peaks of WHSC1 in K562 from ENCODE 3 (ENCFF119SZQ) 1 790 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of WHSC1 in K562 from ENCODE 3 (ENCFF119SZQ)\ parent encTfChipPk off\ shortLabel K562 WHSC1\ subGroups cellType=K562 factor=WHSC1\ track encTfChipPkENCFF119SZQ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_ctss_rev MscAdipogenicInduction_01hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_reverse 0 790 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep3.CNhs13433.13243-142B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13243-142B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_tpm_rev MscAdipogenicInduction_01hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_reverse 1 790 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep3.CNhs13433.13243-142B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13243-142B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Nr2f2sc271940V0422111PkRep2 HepG NR2F2 V11 2 broadPeak HepG2 NR2F2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 791 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 NR2F2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG NR2F2 V11 2\ subGroups view=Peaks factor=NR2F2SC271940 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Nr2f2sc271940V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF803LEC K562 XRCC3 narrowPeak Transcription Factor ChIP-seq Peaks of XRCC3 in K562 from ENCODE 3 (ENCFF803LEC) 1 791 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of XRCC3 in K562 from ENCODE 3 (ENCFF803LEC)\ parent encTfChipPk off\ shortLabel K562 XRCC3\ subGroups cellType=K562 factor=XRCC3\ track encTfChipPkENCFF803LEC\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_ctss_fwd MscAdipogenicInduction_01hr40minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_forward 0 791 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep1.CNhs13600.13247-142B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13247-142B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_tpm_fwd MscAdipogenicInduction_01hr40minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_forward 1 791 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep1.CNhs13600.13247-142B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13247-142B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Nr2f2sc271940V0422111RawRep2 HepG NR2F2 V11 2 bigWig 1.000000 6660.000000 HepG2 NR2F2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 792 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 NR2F2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG NR2F2 V11 2\ subGroups view=RawSignal factor=NR2F2SC271940 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Nr2f2sc271940V0422111RawRep2\ type bigWig 1.000000 6660.000000\ encTfChipPkENCFF998KKJ K562 XRCC5 narrowPeak Transcription Factor ChIP-seq Peaks of XRCC5 in K562 from ENCODE 3 (ENCFF998KKJ) 1 792 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of XRCC5 in K562 from ENCODE 3 (ENCFF998KKJ)\ parent encTfChipPk off\ shortLabel K562 XRCC5\ subGroups cellType=K562 factor=XRCC5\ track encTfChipPkENCFF998KKJ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_ctss_rev MscAdipogenicInduction_01hr40minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_reverse 0 792 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep1.CNhs13600.13247-142B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13247-142B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_tpm_rev MscAdipogenicInduction_01hr40minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_reverse 1 792 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep1.CNhs13600.13247-142B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13247-142B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2NrsfPcr2xPkRep1 HepG NRSF PCR2 1 broadPeak HepG2 NRSF PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 793 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 NRSF PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG NRSF PCR2 1\ subGroups view=Peaks factor=NRSF cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2NrsfPcr2xPkRep1\ type broadPeak\ encTfChipPkENCFF557DSM K562 YY1 1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in K562 from ENCODE 3 (ENCFF557DSM) 1 793 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in K562 from ENCODE 3 (ENCFF557DSM)\ parent encTfChipPk off\ shortLabel K562 YY1 1\ subGroups cellType=K562 factor=YY1\ track encTfChipPkENCFF557DSM\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_ctss_fwd MscAdipogenicInduction_01hr40minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_forward 0 793 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep2.CNhs13601.13248-142B8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13248-142B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_tpm_fwd MscAdipogenicInduction_01hr40minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_forward 1 793 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep2.CNhs13601.13248-142B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13248-142B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2NrsfPcr2xRawRep1 HepG NRSF PCR2 1 bigWig 0.218070 452.549988 HepG2 NRSF PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 794 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 NRSF PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG NRSF PCR2 1\ subGroups view=RawSignal factor=NRSF cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2NrsfPcr2xRawRep1\ type bigWig 0.218070 452.549988\ encTfChipPkENCFF328XKC K562 YY1 2 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in K562 from ENCODE 3 (ENCFF328XKC) 1 794 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in K562 from ENCODE 3 (ENCFF328XKC)\ parent encTfChipPk off\ shortLabel K562 YY1 2\ subGroups cellType=K562 factor=YY1\ track encTfChipPkENCFF328XKC\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_ctss_rev MscAdipogenicInduction_01hr40minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_reverse 0 794 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep2.CNhs13601.13248-142B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13248-142B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_tpm_rev MscAdipogenicInduction_01hr40minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_reverse 1 794 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep2.CNhs13601.13248-142B8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13248-142B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2NrsfPcr2xPkRep2 HepG NRSF PCR2 2 broadPeak HepG2 NRSF PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 795 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 NRSF PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG NRSF PCR2 2\ subGroups view=Peaks factor=NRSF cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2NrsfPcr2xPkRep2\ type broadPeak\ encTfChipPkENCFF253FON K562 ZBED1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBED1 in K562 from ENCODE 3 (ENCFF253FON) 1 795 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZBED1 in K562 from ENCODE 3 (ENCFF253FON)\ parent encTfChipPk off\ shortLabel K562 ZBED1\ subGroups cellType=K562 factor=ZBED1\ track encTfChipPkENCFF253FON\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_ctss_fwd MscAdipogenicInduction_01hr40minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_forward 0 795 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep3.CNhs13602.13249-142B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13249-142B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_tpm_fwd MscAdipogenicInduction_01hr40minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_forward 1 795 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep3.CNhs13602.13249-142B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13249-142B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2NrsfPcr2xRawRep2 HepG NRSF PCR2 2 bigWig 0.156021 1008.719971 HepG2 NRSF PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 796 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 NRSF PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG NRSF PCR2 2\ subGroups view=RawSignal factor=NRSF cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2NrsfPcr2xRawRep2\ type bigWig 0.156021 1008.719971\ encTfChipPkENCFF434QZL K562 ZBTB11 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB11 in K562 from ENCODE 3 (ENCFF434QZL) 1 796 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB11 in K562 from ENCODE 3 (ENCFF434QZL)\ parent encTfChipPk off\ shortLabel K562 ZBTB11\ subGroups cellType=K562 factor=ZBTB11\ track encTfChipPkENCFF434QZL\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_ctss_rev MscAdipogenicInduction_01hr40minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_reverse 0 796 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep3.CNhs13602.13249-142B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13249-142B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_tpm_rev MscAdipogenicInduction_01hr40minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_reverse 1 796 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep3.CNhs13602.13249-142B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13249-142B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2NrsfV0416101PkRep1 HepG NRSF V101 1 broadPeak HepG2 NRSF v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 797 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 NRSF v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG NRSF V101 1\ subGroups view=Peaks factor=NRSF cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2NrsfV0416101PkRep1\ type broadPeak\ encTfChipPkENCFF561USY K562 ZBTB2 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB2 in K562 from ENCODE 3 (ENCFF561USY) 1 797 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB2 in K562 from ENCODE 3 (ENCFF561USY)\ parent encTfChipPk off\ shortLabel K562 ZBTB2\ subGroups cellType=K562 factor=ZBTB2\ track encTfChipPkENCFF561USY\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_ctss_fwd MscAdipogenicInduction_02hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_forward 0 797 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep1.CNhs13603.13250-142C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13250-142C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_tpm_fwd MscAdipogenicInduction_02hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_forward 1 797 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep1.CNhs13603.13250-142C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13250-142C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2NrsfV0416101RawRep1 HepG NRSF V101 1 bigWig 0.121559 201.848007 HepG2 NRSF v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 798 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 NRSF v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG NRSF V101 1\ subGroups view=RawSignal factor=NRSF cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2NrsfV0416101RawRep1\ type bigWig 0.121559 201.848007\ encTfChipPkENCFF408FQC K562 ZBTB33 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in K562 from ENCODE 3 (ENCFF408FQC) 1 798 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in K562 from ENCODE 3 (ENCFF408FQC)\ parent encTfChipPk off\ shortLabel K562 ZBTB33\ subGroups cellType=K562 factor=ZBTB33\ track encTfChipPkENCFF408FQC\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_ctss_rev MscAdipogenicInduction_02hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_reverse 0 798 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep1.CNhs13603.13250-142C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13250-142C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_tpm_rev MscAdipogenicInduction_02hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_reverse 1 798 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep1.CNhs13603.13250-142C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13250-142C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2NrsfV0416101PkRep2 HepG NRSF V101 2 broadPeak HepG2 NRSF v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 799 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 NRSF v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG NRSF V101 2\ subGroups view=Peaks factor=NRSF cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2NrsfV0416101PkRep2\ type broadPeak\ encTfChipPkENCFF417LEJ K562 ZBTB40 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB40 in K562 from ENCODE 3 (ENCFF417LEJ) 1 799 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB40 in K562 from ENCODE 3 (ENCFF417LEJ)\ parent encTfChipPk off\ shortLabel K562 ZBTB40\ subGroups cellType=K562 factor=ZBTB40\ track encTfChipPkENCFF417LEJ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_ctss_fwd MscAdipogenicInduction_02hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_forward 0 799 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep2.CNhs13604.13251-142C2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13251-142C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_tpm_fwd MscAdipogenicInduction_02hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_forward 1 799 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep2.CNhs13604.13251-142C2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13251-142C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2NrsfV0416101RawRep2 HepG NRSF V101 2 bigWig 0.127718 2176.280029 HepG2 NRSF v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 800 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 NRSF v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG NRSF V101 2\ subGroups view=RawSignal factor=NRSF cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2NrsfV0416101RawRep2\ type bigWig 0.127718 2176.280029\ encTfChipPkENCFF359QCN K562 ZBTB5 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB5 in K562 from ENCODE 3 (ENCFF359QCN) 1 800 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB5 in K562 from ENCODE 3 (ENCFF359QCN)\ parent encTfChipPk off\ shortLabel K562 ZBTB5 1\ subGroups cellType=K562 factor=ZBTB5\ track encTfChipPkENCFF359QCN\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_ctss_rev MscAdipogenicInduction_02hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_reverse 0 800 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep2.CNhs13604.13251-142C2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13251-142C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_tpm_rev MscAdipogenicInduction_02hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_reverse 1 800 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep2.CNhs13604.13251-142C2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13251-142C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2P300V0416101PkRep1 HepG p300 V101 1 broadPeak HepG2 p300 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 801 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 p300 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG p300 V101 1\ subGroups view=Peaks factor=P300 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2P300V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF394IKH K562 ZBTB5 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB5 in K562 from ENCODE 3 (ENCFF394IKH) 1 801 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB5 in K562 from ENCODE 3 (ENCFF394IKH)\ parent encTfChipPk off\ shortLabel K562 ZBTB5 2\ subGroups cellType=K562 factor=ZBTB5\ track encTfChipPkENCFF394IKH\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_ctss_fwd MscAdipogenicInduction_02hr30minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_forward 0 801 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep1.CNhs13606.13253-142C4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13253-142C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_tpm_fwd MscAdipogenicInduction_02hr30minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_forward 1 801 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep1.CNhs13606.13253-142C4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13253-142C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2P300V0416101RawRep1 HepG p300 V101 1 bigWig 0.176156 338.042999 HepG2 p300 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 802 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 p300 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG p300 V101 1\ subGroups view=RawSignal factor=P300 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2P300V0416101RawRep1\ type bigWig 0.176156 338.042999\ encTfChipPkENCFF706ISJ K562 ZBTB7A narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB7A in K562 from ENCODE 3 (ENCFF706ISJ) 1 802 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB7A in K562 from ENCODE 3 (ENCFF706ISJ)\ parent encTfChipPk off\ shortLabel K562 ZBTB7A\ subGroups cellType=K562 factor=ZBTB7A\ track encTfChipPkENCFF706ISJ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_ctss_rev MscAdipogenicInduction_02hr30minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_reverse 0 802 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep1.CNhs13606.13253-142C4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13253-142C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_tpm_rev MscAdipogenicInduction_02hr30minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_reverse 1 802 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep1.CNhs13606.13253-142C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13253-142C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2P300V0416101PkRep2 HepG p300 V101 2 broadPeak HepG2 p300 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 803 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 p300 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG p300 V101 2\ subGroups view=Peaks factor=P300 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2P300V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF589EVD K562 ZBTB8A narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB8A in K562 from ENCODE 3 (ENCFF589EVD) 1 803 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB8A in K562 from ENCODE 3 (ENCFF589EVD)\ parent encTfChipPk off\ shortLabel K562 ZBTB8A\ subGroups cellType=K562 factor=ZBTB8A\ track encTfChipPkENCFF589EVD\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_ctss_fwd MscAdipogenicInduction_02hr30minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_forward 0 803 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep3.CNhs13608.13255-142C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13255-142C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_tpm_fwd MscAdipogenicInduction_02hr30minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_forward 1 803 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep3.CNhs13608.13255-142C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13255-142C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2P300V0416101RawRep2 HepG p300 V101 2 bigWig 0.161745 122.723999 HepG2 p300 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 804 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 p300 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG p300 V101 2\ subGroups view=RawSignal factor=P300 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2P300V0416101RawRep2\ type bigWig 0.161745 122.723999\ encTfChipPkENCFF407AOX K562 ZEB2 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZEB2 in K562 from ENCODE 3 (ENCFF407AOX) 1 804 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZEB2 in K562 from ENCODE 3 (ENCFF407AOX)\ parent encTfChipPk off\ shortLabel K562 ZEB2 1\ subGroups cellType=K562 factor=ZEB2\ track encTfChipPkENCFF407AOX\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_ctss_rev MscAdipogenicInduction_02hr30minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_reverse 0 804 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep3.CNhs13608.13255-142C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13255-142C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_tpm_rev MscAdipogenicInduction_02hr30minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_reverse 1 804 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep3.CNhs13608.13255-142C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13255-142C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Pol2Pcr2xPkRep1 HepG Pol2 PCR2 1 broadPeak HepG2 Pol2 PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 805 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 Pol2 PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG Pol2 PCR2 1\ subGroups view=Peaks factor=POL2 cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Pol2Pcr2xPkRep1\ type broadPeak\ encTfChipPkENCFF076IFG K562 ZEB2 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZEB2 in K562 from ENCODE 3 (ENCFF076IFG) 1 805 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZEB2 in K562 from ENCODE 3 (ENCFF076IFG)\ parent encTfChipPk off\ shortLabel K562 ZEB2 2\ subGroups cellType=K562 factor=ZEB2\ track encTfChipPkENCFF076IFG\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_ctss_fwd MscAdipogenicInduction_03hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_forward 0 805 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep1.CNhs13609.13256-142C7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13256-142C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_tpm_fwd MscAdipogenicInduction_03hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_forward 1 805 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep1.CNhs13609.13256-142C7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13256-142C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Pol2Pcr2xRawRep1 HepG Pol2 PCR2 1 bigWig 0.190300 526.560974 HepG2 Pol2 PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 806 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Pol2 PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG Pol2 PCR2 1\ subGroups view=RawSignal factor=POL2 cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Pol2Pcr2xRawRep1\ type bigWig 0.190300 526.560974\ encTfChipPkENCFF396DNK K562 ZFP91 narrowPeak Transcription Factor ChIP-seq Peaks of ZFP91 in K562 from ENCODE 3 (ENCFF396DNK) 1 806 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZFP91 in K562 from ENCODE 3 (ENCFF396DNK)\ parent encTfChipPk off\ shortLabel K562 ZFP91\ subGroups cellType=K562 factor=ZFP91\ track encTfChipPkENCFF396DNK\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_ctss_rev MscAdipogenicInduction_03hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_reverse 0 806 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep1.CNhs13609.13256-142C7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13256-142C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_tpm_rev MscAdipogenicInduction_03hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_reverse 1 806 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep1.CNhs13609.13256-142C7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13256-142C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Pol2Pcr2xPkRep2 HepG Pol2 PCR2 2 broadPeak HepG2 Pol2 PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 807 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 Pol2 PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG Pol2 PCR2 2\ subGroups view=Peaks factor=POL2 cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Pol2Pcr2xPkRep2\ type broadPeak\ encTfChipPkENCFF195ODE K562 ZHX1 narrowPeak Transcription Factor ChIP-seq Peaks of ZHX1 in K562 from ENCODE 3 (ENCFF195ODE) 1 807 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZHX1 in K562 from ENCODE 3 (ENCFF195ODE)\ parent encTfChipPk off\ shortLabel K562 ZHX1\ subGroups cellType=K562 factor=ZHX1\ track encTfChipPkENCFF195ODE\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_ctss_fwd MscAdipogenicInduction_03hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_forward 0 807 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep3.CNhs13611.13258-142C9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13258-142C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_tpm_fwd MscAdipogenicInduction_03hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_forward 1 807 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep3.CNhs13611.13258-142C9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13258-142C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Pol2Pcr2xRawRep2 HepG Pol2 PCR2 2 bigWig 0.124313 539.424988 HepG2 Pol2 PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 808 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Pol2 PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG Pol2 PCR2 2\ subGroups view=RawSignal factor=POL2 cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Pol2Pcr2xRawRep2\ type bigWig 0.124313 539.424988\ encTfChipPkENCFF163VUK K562 ZKSCAN1 narrowPeak Transcription Factor ChIP-seq Peaks of ZKSCAN1 in K562 from ENCODE 3 (ENCFF163VUK) 1 808 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZKSCAN1 in K562 from ENCODE 3 (ENCFF163VUK)\ parent encTfChipPk off\ shortLabel K562 ZKSCAN1\ subGroups cellType=K562 factor=ZKSCAN1\ track encTfChipPkENCFF163VUK\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_ctss_rev MscAdipogenicInduction_03hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_reverse 0 808 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep3.CNhs13611.13258-142C9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13258-142C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_tpm_rev MscAdipogenicInduction_03hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_reverse 1 808 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep3.CNhs13611.13258-142C9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13258-142C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Pol24h8V0416102PkRep1 HepG Pol2-4H8 V102 1 broadPeak HepG2 Pol2-4H8 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 809 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 Pol2-4H8 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG Pol2-4H8 V102 1\ subGroups view=Peaks factor=POL24H8 cellType=t2HEPG2 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Pol24h8V0416102PkRep1\ type broadPeak\ encTfChipPkENCFF597DIY K562 ZMIZ1 narrowPeak Transcription Factor ChIP-seq Peaks of ZMIZ1 in K562 from ENCODE 3 (ENCFF597DIY) 1 809 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZMIZ1 in K562 from ENCODE 3 (ENCFF597DIY)\ parent encTfChipPk off\ shortLabel K562 ZMIZ1\ subGroups cellType=K562 factor=ZMIZ1\ track encTfChipPkENCFF597DIY\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_ctss_fwd MscAdipogenicInduction_Day01Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_forward 0 809 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep2.CNhs13616.13263-142D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13263-142D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_tpm_fwd MscAdipogenicInduction_Day01Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_forward 1 809 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep2.CNhs13616.13263-142D5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13263-142D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Pol24h8V0416102RawRep1 HepG Pol2-4H8 V102 1 bigWig 0.184621 449.414001 HepG2 Pol2-4H8 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 810 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Pol2-4H8 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG Pol2-4H8 V102 1\ subGroups view=RawSignal factor=POL24H8 cellType=t2HEPG2 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Pol24h8V0416102RawRep1\ type bigWig 0.184621 449.414001\ encTfChipPkENCFF511QHY K562 ZMYM3 narrowPeak Transcription Factor ChIP-seq Peaks of ZMYM3 in K562 from ENCODE 3 (ENCFF511QHY) 1 810 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZMYM3 in K562 from ENCODE 3 (ENCFF511QHY)\ parent encTfChipPk off\ shortLabel K562 ZMYM3\ subGroups cellType=K562 factor=ZMYM3\ track encTfChipPkENCFF511QHY\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_ctss_rev MscAdipogenicInduction_Day01Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_reverse 0 810 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep2.CNhs13616.13263-142D5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13263-142D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_tpm_rev MscAdipogenicInduction_Day01Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_reverse 1 810 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep2.CNhs13616.13263-142D5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13263-142D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Pol24h8V0416102PkRep2 HepG Pol2-4H8 V102 2 broadPeak HepG2 Pol2-4H8 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 811 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 Pol2-4H8 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG Pol2-4H8 V102 2\ subGroups view=Peaks factor=POL24H8 cellType=t2HEPG2 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Pol24h8V0416102PkRep2\ type broadPeak\ encTfChipPkENCFF114IWY K562 ZNF143 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF143 in K562 from ENCODE 3 (ENCFF114IWY) 1 811 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF143 in K562 from ENCODE 3 (ENCFF114IWY)\ parent encTfChipPk off\ shortLabel K562 ZNF143\ subGroups cellType=K562 factor=ZNF143\ track encTfChipPkENCFF114IWY\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_ctss_fwd MscAdipogenicInduction_Day01Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_forward 0 811 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep3.CNhs13617.13264-142D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13264-142D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_tpm_fwd MscAdipogenicInduction_Day01Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_forward 1 811 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep3.CNhs13617.13264-142D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13264-142D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Pol24h8V0416102RawRep2 HepG Pol2-4H8 V102 2 bigWig 0.100880 389.243988 HepG2 Pol2-4H8 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 812 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Pol2-4H8 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG Pol2-4H8 V102 2\ subGroups view=RawSignal factor=POL24H8 cellType=t2HEPG2 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Pol24h8V0416102RawRep2\ type bigWig 0.100880 389.243988\ encTfChipPkENCFF556YCY K562 ZNF184 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF184 in K562 from ENCODE 3 (ENCFF556YCY) 1 812 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF184 in K562 from ENCODE 3 (ENCFF556YCY)\ parent encTfChipPk off\ shortLabel K562 ZNF184 1\ subGroups cellType=K562 factor=ZNF184\ track encTfChipPkENCFF556YCY\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_ctss_rev MscAdipogenicInduction_Day01Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_reverse 0 812 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep3.CNhs13617.13264-142D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13264-142D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_tpm_rev MscAdipogenicInduction_Day01Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_reverse 1 812 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep3.CNhs13617.13264-142D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13264-142D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Rad21V0416101PkRep1 HepG RAD21 V101 1 broadPeak HepG2 RAD21 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 813 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 RAD21 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG RAD21 V101 1\ subGroups view=Peaks factor=RAD21 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Rad21V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF728NEV K562 ZNF184 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF184 in K562 from ENCODE 3 (ENCFF728NEV) 1 813 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF184 in K562 from ENCODE 3 (ENCFF728NEV)\ parent encTfChipPk off\ shortLabel K562 ZNF184 2\ subGroups cellType=K562 factor=ZNF184\ track encTfChipPkENCFF728NEV\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_ctss_fwd MscAdipogenicInduction_Day02Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_forward 0 813 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep1.CNhs13619.13265-142D7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13265-142D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_tpm_fwd MscAdipogenicInduction_Day02Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_forward 1 813 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep1.CNhs13619.13265-142D7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13265-142D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Rad21V0416101RawRep1 HepG RAD21 V101 1 bigWig 0.163920 126.054001 HepG2 RAD21 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 814 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 RAD21 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG RAD21 V101 1\ subGroups view=RawSignal factor=RAD21 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Rad21V0416101RawRep1\ type bigWig 0.163920 126.054001\ encTfChipPkENCFF238MYM K562 ZNF24 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF238MYM) 1 814 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF238MYM)\ parent encTfChipPk off\ shortLabel K562 ZNF24 1\ subGroups cellType=K562 factor=ZNF24\ track encTfChipPkENCFF238MYM\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_ctss_rev MscAdipogenicInduction_Day02Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_reverse 0 814 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep1.CNhs13619.13265-142D7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13265-142D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_tpm_rev MscAdipogenicInduction_Day02Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_reverse 1 814 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep1.CNhs13619.13265-142D7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13265-142D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Rad21V0416101PkRep2 HepG RAD21 V101 2 broadPeak HepG2 RAD21 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 815 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 RAD21 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG RAD21 V101 2\ subGroups view=Peaks factor=RAD21 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Rad21V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF973LDQ K562 ZNF24 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF973LDQ) 1 815 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF973LDQ)\ parent encTfChipPk off\ shortLabel K562 ZNF24 2\ subGroups cellType=K562 factor=ZNF24\ track encTfChipPkENCFF973LDQ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_ctss_fwd MscAdipogenicInduction_Day02Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_forward 0 815 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep2.CNhs13620.13266-142D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13266-142D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_tpm_fwd MscAdipogenicInduction_Day02Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_forward 1 815 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep2.CNhs13620.13266-142D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13266-142D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Rad21V0416101RawRep2 HepG RAD21 V101 2 bigWig 0.149907 105.571999 HepG2 RAD21 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 816 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 RAD21 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG RAD21 V101 2\ subGroups view=RawSignal factor=RAD21 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Rad21V0416101RawRep2\ type bigWig 0.149907 105.571999\ encTfChipPkENCFF340PPI K562 ZNF24 3 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF340PPI) 1 816 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF340PPI)\ parent encTfChipPk off\ shortLabel K562 ZNF24 3\ subGroups cellType=K562 factor=ZNF24\ track encTfChipPkENCFF340PPI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_ctss_rev MscAdipogenicInduction_Day02Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_reverse 0 816 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep2.CNhs13620.13266-142D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13266-142D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_tpm_rev MscAdipogenicInduction_Day02Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_reverse 1 816 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep2.CNhs13620.13266-142D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13266-142D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2RxraPcr1xPkRep1 HepG RXRA PCR1 1 broadPeak HepG2 RXRA PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 817 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 RXRA PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG RXRA PCR1 1\ subGroups view=Peaks factor=RXRA cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2RxraPcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF344QKL K562 ZNF274 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF274 in K562 from ENCODE 3 (ENCFF344QKL) 1 817 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF274 in K562 from ENCODE 3 (ENCFF344QKL)\ parent encTfChipPk off\ shortLabel K562 ZNF274 1\ subGroups cellType=K562 factor=ZNF274\ track encTfChipPkENCFF344QKL\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_ctss_fwd MscAdipogenicInduction_Day02Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_forward 0 817 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep3.CNhs13621.13267-142D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13267-142D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_tpm_fwd MscAdipogenicInduction_Day02Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_forward 1 817 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep3.CNhs13621.13267-142D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13267-142D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2RxraPcr1xRawRep1 HepG RXRA PCR1 1 bigWig 0.196682 214.923996 HepG2 RXRA PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 818 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 RXRA PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG RXRA PCR1 1\ subGroups view=RawSignal factor=RXRA cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2RxraPcr1xRawRep1\ type bigWig 0.196682 214.923996\ encTfChipPkENCFF836LBG K562 ZNF274 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF274 in K562 from ENCODE 3 (ENCFF836LBG) 1 818 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF274 in K562 from ENCODE 3 (ENCFF836LBG)\ parent encTfChipPk off\ shortLabel K562 ZNF274 2\ subGroups cellType=K562 factor=ZNF274\ track encTfChipPkENCFF836LBG\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_ctss_rev MscAdipogenicInduction_Day02Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_reverse 0 818 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep3.CNhs13621.13267-142D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13267-142D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_tpm_rev MscAdipogenicInduction_Day02Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_reverse 1 818 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep3.CNhs13621.13267-142D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13267-142D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2RxraPcr1xPkRep2 HepG RXRA PCR1 2 broadPeak HepG2 RXRA PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 819 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 RXRA PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG RXRA PCR1 2\ subGroups view=Peaks factor=RXRA cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2RxraPcr1xPkRep2\ type broadPeak\ encTfChipPkENCFF386WKY K562 ZNF280A narrowPeak Transcription Factor ChIP-seq Peaks of ZNF280A in K562 from ENCODE 3 (ENCFF386WKY) 1 819 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF280A in K562 from ENCODE 3 (ENCFF386WKY)\ parent encTfChipPk off\ shortLabel K562 ZNF280A\ subGroups cellType=K562 factor=ZNF280A\ track encTfChipPkENCFF386WKY\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_ctss_fwd MscAdipogenicInduction_Day04Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_forward 0 819 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep1.CNhs13622.13268-142E1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13268-142E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_tpm_fwd MscAdipogenicInduction_Day04Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_forward 1 819 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep1.CNhs13622.13268-142E1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13268-142E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2RxraPcr1xRawRep2 HepG RXRA PCR1 2 bigWig 0.154683 337.286011 HepG2 RXRA PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 820 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 RXRA PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG RXRA PCR1 2\ subGroups view=RawSignal factor=RXRA cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2RxraPcr1xRawRep2\ type bigWig 0.154683 337.286011\ encTfChipPkENCFF581ZZT K562 ZNF282 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF282 in K562 from ENCODE 3 (ENCFF581ZZT) 1 820 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF282 in K562 from ENCODE 3 (ENCFF581ZZT)\ parent encTfChipPk off\ shortLabel K562 ZNF282\ subGroups cellType=K562 factor=ZNF282\ track encTfChipPkENCFF581ZZT\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_ctss_rev MscAdipogenicInduction_Day04Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_reverse 0 820 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep1.CNhs13622.13268-142E1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13268-142E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_tpm_rev MscAdipogenicInduction_Day04Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_reverse 1 820 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep1.CNhs13622.13268-142E1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13268-142E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Sin3ak20Pcr1xPkRep1 HepG Sin3A PCR1 1 broadPeak HepG2 Sin3Ak-20 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 821 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 Sin3Ak-20 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG Sin3A PCR1 1\ subGroups view=Peaks factor=SIN3AK20 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Sin3ak20Pcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF788EBS K562 ZNF316 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF316 in K562 from ENCODE 3 (ENCFF788EBS) 1 821 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF316 in K562 from ENCODE 3 (ENCFF788EBS)\ parent encTfChipPk off\ shortLabel K562 ZNF316 1\ subGroups cellType=K562 factor=ZNF316\ track encTfChipPkENCFF788EBS\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_ctss_fwd MscAdipogenicInduction_Day04Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_forward 0 821 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep3.CNhs13624.13270-142E3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13270-142E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_tpm_fwd MscAdipogenicInduction_Day04Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_forward 1 821 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep3.CNhs13624.13270-142E3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13270-142E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Sin3ak20Pcr1xRawRep1 HepG Sin3A PCR1 1 bigWig 0.192791 165.270004 HepG2 Sin3Ak-20 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 822 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Sin3Ak-20 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG Sin3A PCR1 1\ subGroups view=RawSignal factor=SIN3AK20 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Sin3ak20Pcr1xRawRep1\ type bigWig 0.192791 165.270004\ encTfChipPkENCFF442ZUF K562 ZNF316 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF316 in K562 from ENCODE 3 (ENCFF442ZUF) 1 822 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF316 in K562 from ENCODE 3 (ENCFF442ZUF)\ parent encTfChipPk off\ shortLabel K562 ZNF316 2\ subGroups cellType=K562 factor=ZNF316\ track encTfChipPkENCFF442ZUF\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_ctss_rev MscAdipogenicInduction_Day04Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_reverse 0 822 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep3.CNhs13624.13270-142E3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13270-142E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_tpm_rev MscAdipogenicInduction_Day04Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_reverse 1 822 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep3.CNhs13624.13270-142E3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13270-142E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Sin3ak20Pcr1xPkRep2 HepG Sin3A PCR1 2 broadPeak HepG2 Sin3Ak-20 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 823 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 Sin3Ak-20 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG Sin3A PCR1 2\ subGroups view=Peaks factor=SIN3AK20 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Sin3ak20Pcr1xPkRep2\ type broadPeak\ encTfChipPkENCFF921WMN K562 ZNF318 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF318 in K562 from ENCODE 3 (ENCFF921WMN) 1 823 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF318 in K562 from ENCODE 3 (ENCFF921WMN)\ parent encTfChipPk off\ shortLabel K562 ZNF318 1\ subGroups cellType=K562 factor=ZNF318\ track encTfChipPkENCFF921WMN\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_ctss_fwd MscAdipogenicInduction_Day08Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_forward 0 823 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep1.CNhs13625.13271-142E4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13271-142E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_tpm_fwd MscAdipogenicInduction_Day08Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_forward 1 823 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep1.CNhs13625.13271-142E4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13271-142E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Sin3ak20Pcr1xRawRep2 HepG Sin3A PCR1 2 bigWig 0.106626 301.246002 HepG2 Sin3Ak-20 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 824 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Sin3Ak-20 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG Sin3A PCR1 2\ subGroups view=RawSignal factor=SIN3AK20 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Sin3ak20Pcr1xRawRep2\ type bigWig 0.106626 301.246002\ encTfChipPkENCFF698MLW K562 ZNF318 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF318 in K562 from ENCODE 3 (ENCFF698MLW) 1 824 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF318 in K562 from ENCODE 3 (ENCFF698MLW)\ parent encTfChipPk off\ shortLabel K562 ZNF318 2\ subGroups cellType=K562 factor=ZNF318\ track encTfChipPkENCFF698MLW\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_ctss_rev MscAdipogenicInduction_Day08Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_reverse 0 824 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep1.CNhs13625.13271-142E4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13271-142E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_tpm_rev MscAdipogenicInduction_Day08Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_reverse 1 824 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep1.CNhs13625.13271-142E4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13271-142E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Sp1Pcr1xPkRep1 HepG SP1 PCR1 1 broadPeak HepG2 SP1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 825 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 SP1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG SP1 PCR1 1\ subGroups view=Peaks factor=SP1 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Sp1Pcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF706SJZ K562 ZNF384 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF384 in K562 from ENCODE 3 (ENCFF706SJZ) 1 825 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF384 in K562 from ENCODE 3 (ENCFF706SJZ)\ parent encTfChipPk off\ shortLabel K562 ZNF384\ subGroups cellType=K562 factor=ZNF384\ track encTfChipPkENCFF706SJZ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_ctss_fwd MscAdipogenicInduction_Day08Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_forward 0 825 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep2.CNhs13626.13272-142E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13272-142E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_tpm_fwd MscAdipogenicInduction_Day08Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_forward 1 825 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep2.CNhs13626.13272-142E5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13272-142E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Sp1Pcr1xRawRep1 HepG SP1 PCR1 1 bigWig 0.125520 406.872986 HepG2 SP1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 826 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 SP1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG SP1 PCR1 1\ subGroups view=RawSignal factor=SP1 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Sp1Pcr1xRawRep1\ type bigWig 0.125520 406.872986\ encTfChipPkENCFF602CFZ K562 ZNF407 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF407 in K562 from ENCODE 3 (ENCFF602CFZ) 1 826 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF407 in K562 from ENCODE 3 (ENCFF602CFZ)\ parent encTfChipPk off\ shortLabel K562 ZNF407 1\ subGroups cellType=K562 factor=ZNF407\ track encTfChipPkENCFF602CFZ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_ctss_rev MscAdipogenicInduction_Day08Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_reverse 0 826 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep2.CNhs13626.13272-142E5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13272-142E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_tpm_rev MscAdipogenicInduction_Day08Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_reverse 1 826 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep2.CNhs13626.13272-142E5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13272-142E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Sp1Pcr1xPkRep2 HepG SP1 PCR1 2 broadPeak HepG2 SP1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 827 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 SP1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG SP1 PCR1 2\ subGroups view=Peaks factor=SP1 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Sp1Pcr1xPkRep2\ type broadPeak\ encTfChipPkENCFF932UEC K562 ZNF407 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF407 in K562 from ENCODE 3 (ENCFF932UEC) 1 827 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF407 in K562 from ENCODE 3 (ENCFF932UEC)\ parent encTfChipPk off\ shortLabel K562 ZNF407 2\ subGroups cellType=K562 factor=ZNF407\ track encTfChipPkENCFF932UEC\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_ctss_fwd MscAdipogenicInduction_Day08Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_forward 0 827 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep3.CNhs13627.13273-142E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13273-142E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_tpm_fwd MscAdipogenicInduction_Day08Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_forward 1 827 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep3.CNhs13627.13273-142E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13273-142E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Sp1Pcr1xRawRep2 HepG SP1 PCR1 2 bigWig 0.190627 285.750000 HepG2 SP1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 828 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 SP1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG SP1 PCR1 2\ subGroups view=RawSignal factor=SP1 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Sp1Pcr1xRawRep2\ type bigWig 0.190627 285.750000\ encTfChipPkENCFF273TYA K562 ZNF592 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF592 in K562 from ENCODE 3 (ENCFF273TYA) 1 828 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF592 in K562 from ENCODE 3 (ENCFF273TYA)\ parent encTfChipPk off\ shortLabel K562 ZNF592\ subGroups cellType=K562 factor=ZNF592\ track encTfChipPkENCFF273TYA\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_ctss_rev MscAdipogenicInduction_Day08Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_reverse 0 828 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep3.CNhs13627.13273-142E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13273-142E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_tpm_rev MscAdipogenicInduction_Day08Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_reverse 1 828 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep3.CNhs13627.13273-142E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13273-142E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Sp2V0422111PkRep1 HepG SP2 V11 1 broadPeak HepG2 SP2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 829 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 SP2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG SP2 V11 1\ subGroups view=Peaks factor=SP2SC643 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Sp2V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF708BTH K562 ZNF639 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF639 in K562 from ENCODE 3 (ENCFF708BTH) 1 829 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF639 in K562 from ENCODE 3 (ENCFF708BTH)\ parent encTfChipPk off\ shortLabel K562 ZNF639 1\ subGroups cellType=K562 factor=ZNF639\ track encTfChipPkENCFF708BTH\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_ctss_fwd MscAdipogenicInduction_Day12Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_forward 0 829 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep1.CNhs13628.13274-142E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13274-142E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_tpm_fwd MscAdipogenicInduction_Day12Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_forward 1 829 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep1.CNhs13628.13274-142E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13274-142E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Sp2V0422111RawRep1 HepG SP2 V11 1 bigWig 0.107159 278.317993 HepG2 SP2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 830 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 SP2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG SP2 V11 1\ subGroups view=RawSignal factor=SP2SC643 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Sp2V0422111RawRep1\ type bigWig 0.107159 278.317993\ encTfChipPkENCFF284PKK K562 ZNF639 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF639 in K562 from ENCODE 3 (ENCFF284PKK) 1 830 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF639 in K562 from ENCODE 3 (ENCFF284PKK)\ parent encTfChipPk off\ shortLabel K562 ZNF639 2\ subGroups cellType=K562 factor=ZNF639\ track encTfChipPkENCFF284PKK\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_ctss_rev MscAdipogenicInduction_Day12Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_reverse 0 830 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep1.CNhs13628.13274-142E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13274-142E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_tpm_rev MscAdipogenicInduction_Day12Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_reverse 1 830 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep1.CNhs13628.13274-142E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13274-142E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Sp2V0422111PkRep2 HepG SP2 V11 2 broadPeak HepG2 SP2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 831 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 SP2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG SP2 V11 2\ subGroups view=Peaks factor=SP2SC643 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Sp2V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF996IVU K562 ZNF830 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF830 in K562 from ENCODE 3 (ENCFF996IVU) 1 831 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF830 in K562 from ENCODE 3 (ENCFF996IVU)\ parent encTfChipPk off\ shortLabel K562 ZNF830 1\ subGroups cellType=K562 factor=ZNF830\ track encTfChipPkENCFF996IVU\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_ctss_fwd MscAdipogenicInduction_Day12Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_forward 0 831 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep2.CNhs13629.13275-142E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13275-142E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_tpm_fwd MscAdipogenicInduction_Day12Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_forward 1 831 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep2.CNhs13629.13275-142E8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13275-142E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Sp2V0422111RawRep2 HepG SP2 V11 2 bigWig 0.121723 136.177994 HepG2 SP2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 832 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 SP2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG SP2 V11 2\ subGroups view=RawSignal factor=SP2SC643 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Sp2V0422111RawRep2\ type bigWig 0.121723 136.177994\ encTfChipPkENCFF901AHW K562 ZNF830 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF830 in K562 from ENCODE 3 (ENCFF901AHW) 1 832 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZNF830 in K562 from ENCODE 3 (ENCFF901AHW)\ parent encTfChipPk off\ shortLabel K562 ZNF830 2\ subGroups cellType=K562 factor=ZNF830\ track encTfChipPkENCFF901AHW\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_ctss_rev MscAdipogenicInduction_Day12Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_reverse 0 832 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep2.CNhs13629.13275-142E8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13275-142E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_tpm_rev MscAdipogenicInduction_Day12Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_reverse 1 832 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep2.CNhs13629.13275-142E8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13275-142E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2SrfV0416101PkRep1 HepG SRF V101 1 broadPeak HepG2 SRF v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 833 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 SRF v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG SRF V101 1\ subGroups view=Peaks factor=SRF cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2SrfV0416101PkRep1\ type broadPeak\ encTfChipPkENCFF303PMJ K562 ZSCAN29 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZSCAN29 in K562 from ENCODE 3 (ENCFF303PMJ) 1 833 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZSCAN29 in K562 from ENCODE 3 (ENCFF303PMJ)\ parent encTfChipPk off\ shortLabel K562 ZSCAN29 1\ subGroups cellType=K562 factor=ZSCAN29\ track encTfChipPkENCFF303PMJ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_ctss_fwd MscAdipogenicInduction_Day12Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_forward 0 833 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep3.CNhs13630.13276-142E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13276-142E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_tpm_fwd MscAdipogenicInduction_Day12Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_forward 1 833 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep3.CNhs13630.13276-142E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13276-142E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2SrfV0416101RawRep1 HepG SRF V101 1 bigWig 0.180088 305.157990 HepG2 SRF v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 834 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 SRF v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG SRF V101 1\ subGroups view=RawSignal factor=SRF cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2SrfV0416101RawRep1\ type bigWig 0.180088 305.157990\ encTfChipPkENCFF253NXR K562 ZSCAN29 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZSCAN29 in K562 from ENCODE 3 (ENCFF253NXR) 1 834 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZSCAN29 in K562 from ENCODE 3 (ENCFF253NXR)\ parent encTfChipPk off\ shortLabel K562 ZSCAN29 2\ subGroups cellType=K562 factor=ZSCAN29\ track encTfChipPkENCFF253NXR\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_ctss_rev MscAdipogenicInduction_Day12Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_reverse 0 834 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep3.CNhs13630.13276-142E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13276-142E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_tpm_rev MscAdipogenicInduction_Day12Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_reverse 1 834 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep3.CNhs13630.13276-142E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13276-142E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2SrfV0416101PkRep2 HepG SRF V101 2 broadPeak HepG2 SRF v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 835 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 SRF v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG SRF V101 2\ subGroups view=Peaks factor=SRF cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2SrfV0416101PkRep2\ type broadPeak\ encTfChipPkENCFF588OLK K562 ZZZ3 narrowPeak Transcription Factor ChIP-seq Peaks of ZZZ3 in K562 from ENCODE 3 (ENCFF588OLK) 1 835 46 0 184 150 127 219 0 0 0 regulation 1 color 46,0,184\ longLabel Transcription Factor ChIP-seq Peaks of ZZZ3 in K562 from ENCODE 3 (ENCFF588OLK)\ parent encTfChipPk off\ shortLabel K562 ZZZ3\ subGroups cellType=K562 factor=ZZZ3\ track encTfChipPkENCFF588OLK\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_ctss_fwd MscAdipogenicInduction_Day14Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_forward 0 835 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep1.CNhs13338.13277-142F1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13277-142F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day14Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_tpm_fwd MscAdipogenicInduction_Day14Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_forward 1 835 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep1.CNhs13338.13277-142F1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13277-142F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day14Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2SrfV0416101RawRep2 HepG SRF V101 2 bigWig 0.153522 194.434998 HepG2 SRF v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 836 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 SRF v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG SRF V101 2\ subGroups view=RawSignal factor=SRF cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2SrfV0416101RawRep2\ type bigWig 0.153522 194.434998\ encTfChipPkENCFF662IOC KMS-11 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in KMS-11 from ENCODE 3 (ENCFF662IOC) 1 836 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in KMS-11 from ENCODE 3 (ENCFF662IOC)\ parent encTfChipPk off\ shortLabel KMS-11 CTCF\ subGroups cellType=KMS-11 factor=CTCF\ track encTfChipPkENCFF662IOC\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_ctss_rev MscAdipogenicInduction_Day14Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_reverse 0 836 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep1.CNhs13338.13277-142F1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13277-142F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day14Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_tpm_rev MscAdipogenicInduction_Day14Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_reverse 1 836 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep1.CNhs13338.13277-142F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13277-142F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day14Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Taf1Pcr2xPkRep1 HepG TAF1 PCR2 1 broadPeak HepG2 TAF1 PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 837 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TAF1 PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG TAF1 PCR2 1\ subGroups view=Peaks factor=TAF1 cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Taf1Pcr2xPkRep1\ type broadPeak\ encTfChipPkENCFF155SPQ LNCAP CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in LNCAP from ENCODE 3 (ENCFF155SPQ) 1 837 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in LNCAP from ENCODE 3 (ENCFF155SPQ)\ parent encTfChipPk off\ shortLabel LNCAP CTCF 1\ subGroups cellType=LNCAP factor=CTCF\ track encTfChipPkENCFF155SPQ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep3_CNhs13632_ctss_fwd MscAdipogenicInduction_Day14Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep3_CNhs13632_13279-142F3_forward 0 837 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13279-142F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep3.CNhs13632.13279-142F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep3_CNhs13632_13279-142F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13279-142F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day14Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep3_CNhs13632_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13279-142F3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep3_CNhs13632_tpm_fwd MscAdipogenicInduction_Day14Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep3_CNhs13632_13279-142F3_forward 1 837 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13279-142F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep3.CNhs13632.13279-142F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep3_CNhs13632_13279-142F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13279-142F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day14Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep3_CNhs13632_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13279-142F3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Taf1Pcr2xRawRep1 HepG TAF1 PCR2 1 bigWig 0.134014 87.175903 HepG2 TAF1 PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 838 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 TAF1 PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG TAF1 PCR2 1\ subGroups view=RawSignal factor=TAF1 cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Taf1Pcr2xRawRep1\ type bigWig 0.134014 87.175903\ encTfChipPkENCFF901BGG LNCAP CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in LNCAP from ENCODE 3 (ENCFF901BGG) 1 838 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in LNCAP from ENCODE 3 (ENCFF901BGG)\ parent encTfChipPk off\ shortLabel LNCAP CTCF 2\ subGroups cellType=LNCAP factor=CTCF\ track encTfChipPkENCFF901BGG\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep3_CNhs13632_ctss_rev MscAdipogenicInduction_Day14Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep3_CNhs13632_13279-142F3_reverse 0 838 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13279-142F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep3.CNhs13632.13279-142F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep3_CNhs13632_13279-142F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13279-142F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day14Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep3_CNhs13632_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13279-142F3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep3_CNhs13632_tpm_rev MscAdipogenicInduction_Day14Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep3_CNhs13632_13279-142F3_reverse 1 838 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13279-142F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep3.CNhs13632.13279-142F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep3_CNhs13632_13279-142F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13279-142F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day14Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep3_CNhs13632_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13279-142F3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Taf1Pcr2xPkRep2 HepG TAF1 PCR2 2 broadPeak HepG2 TAF1 PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 839 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TAF1 PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG TAF1 PCR2 2\ subGroups view=Peaks factor=TAF1 cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Taf1Pcr2xPkRep2\ type broadPeak\ encTfChipPkENCFF988IOQ LNCaP_FGC CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in LNCaP_clone_FGC from ENCODE 3 (ENCFF988IOQ) 1 839 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in LNCaP_clone_FGC from ENCODE 3 (ENCFF988IOQ)\ parent encTfChipPk off\ shortLabel LNCaP_FGC CTCF\ subGroups cellType=LNCaP_clone_FGC factor=CTCF\ track encTfChipPkENCFF988IOQ\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor1868_121Ud_0h_CNhs13554_ctss_fwd MonocyteMacrophageUdornInfluenza_00hr00minD1+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor1 (868_121:Ud_0h)_CNhs13554_13305-142I2_forward 0 839 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13305-142I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor1%20%28868_121%3aUd_0h%29.CNhs13554.13305-142I2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor1 (868_121:Ud_0h)_CNhs13554_13305-142I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13305-142I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor1868_121Ud_0h_CNhs13554_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13305-142I2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor1868_121Ud_0h_CNhs13554_tpm_fwd MonocyteMacrophageUdornInfluenza_00hr00minD1+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor1 (868_121:Ud_0h)_CNhs13554_13305-142I2_forward 1 839 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13305-142I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor1%20%28868_121%3aUd_0h%29.CNhs13554.13305-142I2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor1 (868_121:Ud_0h)_CNhs13554_13305-142I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13305-142I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor1868_121Ud_0h_CNhs13554_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13305-142I2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Taf1Pcr2xRawRep2 HepG TAF1 PCR2 2 bigWig 0.155171 186.126999 HepG2 TAF1 PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 840 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 TAF1 PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG TAF1 PCR2 2\ subGroups view=RawSignal factor=TAF1 cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Taf1Pcr2xRawRep2\ type bigWig 0.155171 186.126999\ encTfChipPkENCFF884RAO MCF-7 ARID3A narrowPeak Transcription Factor ChIP-seq Peaks of ARID3A in MCF-7 from ENCODE 3 (ENCFF884RAO) 1 840 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ARID3A in MCF-7 from ENCODE 3 (ENCFF884RAO)\ parent encTfChipPk off\ shortLabel MCF-7 ARID3A\ subGroups cellType=MCF-7 factor=ARID3A\ track encTfChipPkENCFF884RAO\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor1868_121Ud_0h_CNhs13554_ctss_rev MonocyteMacrophageUdornInfluenza_00hr00minD1- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor1 (868_121:Ud_0h)_CNhs13554_13305-142I2_reverse 0 840 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13305-142I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor1%20%28868_121%3aUd_0h%29.CNhs13554.13305-142I2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor1 (868_121:Ud_0h)_CNhs13554_13305-142I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13305-142I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor1868_121Ud_0h_CNhs13554_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13305-142I2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor1868_121Ud_0h_CNhs13554_tpm_rev MonocyteMacrophageUdornInfluenza_00hr00minD1- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor1 (868_121:Ud_0h)_CNhs13554_13305-142I2_reverse 1 840 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13305-142I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor1%20%28868_121%3aUd_0h%29.CNhs13554.13305-142I2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor1 (868_121:Ud_0h)_CNhs13554_13305-142I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13305-142I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor1868_121Ud_0h_CNhs13554_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13305-142I2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Tcf12Pcr1xPkRep1 HepG TCF12 PCR1 1 broadPeak HepG2 TCF12 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 841 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TCF12 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG TCF12 PCR1 1\ subGroups view=Peaks factor=TCF12 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Tcf12Pcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF343ULZ MCF-7 ATF7 narrowPeak Transcription Factor ChIP-seq Peaks of ATF7 in MCF-7 from ENCODE 3 (ENCFF343ULZ) 1 841 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ATF7 in MCF-7 from ENCODE 3 (ENCFF343ULZ)\ parent encTfChipPk off\ shortLabel MCF-7 ATF7\ subGroups cellType=MCF-7 factor=ATF7\ track encTfChipPkENCFF343ULZ\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor2150_120Ud_0h_CNhs13646_ctss_fwd MonocyteMacrophageUdornInfluenza_00hr00minD2+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)_CNhs13646_13317-143A5_forward 0 841 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13317-143A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aUd_0h%29.CNhs13646.13317-143A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)_CNhs13646_13317-143A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13317-143A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor2150_120Ud_0h_CNhs13646_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13317-143A5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor2150_120Ud_0h_CNhs13646_tpm_fwd MonocyteMacrophageUdornInfluenza_00hr00minD2+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)_CNhs13646_13317-143A5_forward 1 841 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13317-143A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aUd_0h%29.CNhs13646.13317-143A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)_CNhs13646_13317-143A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13317-143A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor2150_120Ud_0h_CNhs13646_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13317-143A5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Tcf12Pcr1xRawRep1 HepG TCF12 PCR1 1 bigWig 0.148113 105.494003 HepG2 TCF12 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 842 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 TCF12 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG TCF12 PCR1 1\ subGroups view=RawSignal factor=TCF12 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Tcf12Pcr1xRawRep1\ type bigWig 0.148113 105.494003\ encTfChipPkENCFF353CQJ MCF-7 BMI1 narrowPeak Transcription Factor ChIP-seq Peaks of BMI1 in MCF-7 from ENCODE 3 (ENCFF353CQJ) 1 842 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of BMI1 in MCF-7 from ENCODE 3 (ENCFF353CQJ)\ parent encTfChipPk off\ shortLabel MCF-7 BMI1\ subGroups cellType=MCF-7 factor=BMI1\ track encTfChipPkENCFF353CQJ\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor2150_120Ud_0h_CNhs13646_ctss_rev MonocyteMacrophageUdornInfluenza_00hr00minD2- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)_CNhs13646_13317-143A5_reverse 0 842 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13317-143A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aUd_0h%29.CNhs13646.13317-143A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)_CNhs13646_13317-143A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13317-143A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor2150_120Ud_0h_CNhs13646_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13317-143A5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor2150_120Ud_0h_CNhs13646_tpm_rev MonocyteMacrophageUdornInfluenza_00hr00minD2- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)_CNhs13646_13317-143A5_reverse 1 842 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13317-143A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aUd_0h%29.CNhs13646.13317-143A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)_CNhs13646_13317-143A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13317-143A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor2150_120Ud_0h_CNhs13646_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13317-143A5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Tcf12Pcr1xPkRep2 HepG TCF12 PCR1 2 broadPeak HepG2 TCF12 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 843 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TCF12 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG TCF12 PCR1 2\ subGroups view=Peaks factor=TCF12 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Tcf12Pcr1xPkRep2\ type broadPeak\ encTfChipPkENCFF362XAG MCF-7 CHD1 narrowPeak Transcription Factor ChIP-seq Peaks of CHD1 in MCF-7 from ENCODE 3 (ENCFF362XAG) 1 843 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CHD1 in MCF-7 from ENCODE 3 (ENCFF362XAG)\ parent encTfChipPk off\ shortLabel MCF-7 CHD1\ subGroups cellType=MCF-7 factor=CHD1\ track encTfChipPkENCFF362XAG\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor3536_119Ud_0h_CNhs13650_ctss_fwd MonocyteMacrophageUdornInfluenza_00hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)_CNhs13650_13323-143B2_forward 0 843 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13323-143B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aUd_0h%29.CNhs13650.13323-143B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)_CNhs13650_13323-143B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13323-143B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor3536_119Ud_0h_CNhs13650_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13323-143B2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor3536_119Ud_0h_CNhs13650_tpm_fwd MonocyteMacrophageUdornInfluenza_00hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)_CNhs13650_13323-143B2_forward 1 843 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13323-143B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aUd_0h%29.CNhs13650.13323-143B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)_CNhs13650_13323-143B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13323-143B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor3536_119Ud_0h_CNhs13650_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13323-143B2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Tcf12Pcr1xRawRep2 HepG TCF12 PCR1 2 bigWig 0.147578 148.205994 HepG2 TCF12 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 844 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 TCF12 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG TCF12 PCR1 2\ subGroups view=RawSignal factor=TCF12 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Tcf12Pcr1xRawRep2\ type bigWig 0.147578 148.205994\ encTfChipPkENCFF359WMP MCF-7 CLOCK narrowPeak Transcription Factor ChIP-seq Peaks of CLOCK in MCF-7 from ENCODE 3 (ENCFF359WMP) 1 844 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CLOCK in MCF-7 from ENCODE 3 (ENCFF359WMP)\ parent encTfChipPk off\ shortLabel MCF-7 CLOCK\ subGroups cellType=MCF-7 factor=CLOCK\ track encTfChipPkENCFF359WMP\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor3536_119Ud_0h_CNhs13650_ctss_rev MonocyteMacrophageUdornInfluenza_00hr00minD3- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)_CNhs13650_13323-143B2_reverse 0 844 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13323-143B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aUd_0h%29.CNhs13650.13323-143B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)_CNhs13650_13323-143B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13323-143B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor3536_119Ud_0h_CNhs13650_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13323-143B2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor3536_119Ud_0h_CNhs13650_tpm_rev MonocyteMacrophageUdornInfluenza_00hr00minD3- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)_CNhs13650_13323-143B2_reverse 1 844 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13323-143B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aUd_0h%29.CNhs13650.13323-143B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)_CNhs13650_13323-143B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13323-143B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor3536_119Ud_0h_CNhs13650_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13323-143B2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Tead4sc101184V0422111PkRep1 HepG TEAD4 V11 1 broadPeak HepG2 TEAD4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 845 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TEAD4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG TEAD4 V11 1\ subGroups view=Peaks factor=TEAD4SC101184 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Tead4sc101184V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF755DGT MCF-7 COPS2 narrowPeak Transcription Factor ChIP-seq Peaks of COPS2 in MCF-7 from ENCODE 3 (ENCFF755DGT) 1 845 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of COPS2 in MCF-7 from ENCODE 3 (ENCFF755DGT)\ parent encTfChipPk off\ shortLabel MCF-7 COPS2\ subGroups cellType=MCF-7 factor=COPS2\ track encTfChipPkENCFF755DGT\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_ctss_fwd MonocyteMacrophageUdornInfluenza_00hr00minD4+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_forward 0 845 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aUd_0h%29.CNhs13639.13311-142I8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13311-142I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_tpm_fwd MonocyteMacrophageUdornInfluenza_00hr00minD4+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_forward 1 845 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aUd_0h%29.CNhs13639.13311-142I8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13311-142I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Tead4sc101184V0422111RawRep1 HepG TEAD4 V11 1 bigWig 0.108540 194.287003 HepG2 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 846 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG TEAD4 V11 1\ subGroups view=RawSignal factor=TEAD4SC101184 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Tead4sc101184V0422111RawRep1\ type bigWig 0.108540 194.287003\ encTfChipPkENCFF127RVQ MCF-7 CREB1 1 narrowPeak Transcription Factor ChIP-seq Peaks of CREB1 in MCF-7 from ENCODE 3 (ENCFF127RVQ) 1 846 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CREB1 in MCF-7 from ENCODE 3 (ENCFF127RVQ)\ parent encTfChipPk off\ shortLabel MCF-7 CREB1 1\ subGroups cellType=MCF-7 factor=CREB1\ track encTfChipPkENCFF127RVQ\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_ctss_rev MonocyteMacrophageUdornInfluenza_00hr00minD4- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_reverse 0 846 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aUd_0h%29.CNhs13639.13311-142I8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13311-142I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_tpm_rev MonocyteMacrophageUdornInfluenza_00hr00minD4- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_reverse 1 846 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aUd_0h%29.CNhs13639.13311-142I8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13311-142I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Tead4sc101184V0422111PkRep2 HepG TEAD4 V11 2 broadPeak HepG2 TEAD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 847 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 TEAD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG TEAD4 V11 2\ subGroups view=Peaks factor=TEAD4SC101184 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Tead4sc101184V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF445LQN MCF-7 CREB1 2 narrowPeak Transcription Factor ChIP-seq Peaks of CREB1 in MCF-7 from ENCODE 3 (ENCFF445LQN) 1 847 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CREB1 in MCF-7 from ENCODE 3 (ENCFF445LQN)\ parent encTfChipPk off\ shortLabel MCF-7 CREB1 2\ subGroups cellType=MCF-7 factor=CREB1\ track encTfChipPkENCFF445LQN\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_ctss_fwd MonocyteMacrophageUdornInfluenza_02hr00minD1+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_forward 0 847 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor1%20%28868_121%3aUd_2h%29.CNhs13555.13306-142I3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13306-142I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_tpm_fwd MonocyteMacrophageUdornInfluenza_02hr00minD1+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_forward 1 847 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor1%20%28868_121%3aUd_2h%29.CNhs13555.13306-142I3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13306-142I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Tead4sc101184V0422111RawRep2 HepG TEAD4 V11 2 bigWig 0.690667 155.744995 HepG2 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 848 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG TEAD4 V11 2\ subGroups view=RawSignal factor=TEAD4SC101184 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Tead4sc101184V0422111RawRep2\ type bigWig 0.690667 155.744995\ encTfChipPkENCFF785ZQF MCF-7 CTBP1 narrowPeak Transcription Factor ChIP-seq Peaks of CTBP1 in MCF-7 from ENCODE 3 (ENCFF785ZQF) 1 848 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTBP1 in MCF-7 from ENCODE 3 (ENCFF785ZQF)\ parent encTfChipPk off\ shortLabel MCF-7 CTBP1\ subGroups cellType=MCF-7 factor=CTBP1\ track encTfChipPkENCFF785ZQF\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_ctss_rev MonocyteMacrophageUdornInfluenza_02hr00minD1- bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_reverse 0 848 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor1%20%28868_121%3aUd_2h%29.CNhs13555.13306-142I3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13306-142I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_tpm_rev MonocyteMacrophageUdornInfluenza_02hr00minD1- bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_reverse 1 848 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor1%20%28868_121%3aUd_2h%29.CNhs13555.13306-142I3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13306-142I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Usf1Pcr1xPkRep1 HepG USF1 PCR1 1 broadPeak HepG2 USF-1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 849 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 USF-1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG USF1 PCR1 1\ subGroups view=Peaks factor=USF1 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Usf1Pcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF136BEY MCF-7 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF136BEY) 1 849 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF136BEY)\ parent encTfChipPk on\ shortLabel MCF-7 CTCF 1\ subGroups cellType=MCF-7 factor=CTCF\ track encTfChipPkENCFF136BEY\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_ctss_fwd MonocyteMacrophageUdornInfluenza_02hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_forward 0 849 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor3%20%28536_119%3aUd_2h%29.CNhs13651.13324-143B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13324-143B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_tpm_fwd MonocyteMacrophageUdornInfluenza_02hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_forward 1 849 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor3%20%28536_119%3aUd_2h%29.CNhs13651.13324-143B3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13324-143B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Usf1Pcr1xRawRep1 HepG USF1 PCR1 1 bigWig 0.218011 69.818199 HepG2 USF-1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 850 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 USF-1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG USF1 PCR1 1\ subGroups view=RawSignal factor=USF1 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Usf1Pcr1xRawRep1\ type bigWig 0.218011 69.818199\ encTfChipPkENCFF586KIH MCF-7 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF586KIH) 1 850 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF586KIH)\ parent encTfChipPk off\ shortLabel MCF-7 CTCF 2\ subGroups cellType=MCF-7 factor=CTCF\ track encTfChipPkENCFF586KIH\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_ctss_rev MonocyteMacrophageUdornInfluenza_02hr00minD3- bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_reverse 0 850 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor3%20%28536_119%3aUd_2h%29.CNhs13651.13324-143B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13324-143B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_tpm_rev MonocyteMacrophageUdornInfluenza_02hr00minD3- bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_reverse 1 850 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor3%20%28536_119%3aUd_2h%29.CNhs13651.13324-143B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13324-143B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Usf1Pcr1xPkRep2 HepG USF1 PCR1 2 broadPeak HepG2 USF-1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 851 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 USF-1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG USF1 PCR1 2\ subGroups view=Peaks factor=USF1 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Usf1Pcr1xPkRep2\ type broadPeak\ encTfChipPkENCFF164EJE MCF-7 CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF164EJE) 1 851 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF164EJE)\ parent encTfChipPk off\ shortLabel MCF-7 CTCF 3\ subGroups cellType=MCF-7 factor=CTCF\ track encTfChipPkENCFF164EJE\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor4227_121Ud_2h_CNhs13640_ctss_fwd MonocyteMacrophageUdornInfluenza_02hr00minD4+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor4 (227_121:Ud_2h)_CNhs13640_13312-142I9_forward 0 851 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13312-142I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor4%20%28227_121%3aUd_2h%29.CNhs13640.13312-142I9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor4 (227_121:Ud_2h)_CNhs13640_13312-142I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13312-142I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor4227_121Ud_2h_CNhs13640_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13312-142I9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor4227_121Ud_2h_CNhs13640_tpm_fwd MonocyteMacrophageUdornInfluenza_02hr00minD4+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor4 (227_121:Ud_2h)_CNhs13640_13312-142I9_forward 1 851 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13312-142I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor4%20%28227_121%3aUd_2h%29.CNhs13640.13312-142I9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor4 (227_121:Ud_2h)_CNhs13640_13312-142I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13312-142I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor4227_121Ud_2h_CNhs13640_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13312-142I9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Usf1Pcr1xRawRep2 HepG USF1 PCR1 2 bigWig 0.101705 369.062988 HepG2 USF-1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 852 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 USF-1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG USF1 PCR1 2\ subGroups view=RawSignal factor=USF1 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Usf1Pcr1xRawRep2\ type bigWig 0.101705 369.062988\ encTfChipPkENCFF414FWV MCF-7 CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF414FWV) 1 852 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF414FWV)\ parent encTfChipPk off\ shortLabel MCF-7 CTCF 4\ subGroups cellType=MCF-7 factor=CTCF\ track encTfChipPkENCFF414FWV\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor4227_121Ud_2h_CNhs13640_ctss_rev MonocyteMacrophageUdornInfluenza_02hr00minD4- bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor4 (227_121:Ud_2h)_CNhs13640_13312-142I9_reverse 0 852 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13312-142I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor4%20%28227_121%3aUd_2h%29.CNhs13640.13312-142I9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor4 (227_121:Ud_2h)_CNhs13640_13312-142I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13312-142I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor4227_121Ud_2h_CNhs13640_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13312-142I9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor4227_121Ud_2h_CNhs13640_tpm_rev MonocyteMacrophageUdornInfluenza_02hr00minD4- bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor4 (227_121:Ud_2h)_CNhs13640_13312-142I9_reverse 1 852 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13312-142I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor4%20%28227_121%3aUd_2h%29.CNhs13640.13312-142I9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor4 (227_121:Ud_2h)_CNhs13640_13312-142I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13312-142I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor4227_121Ud_2h_CNhs13640_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13312-142I9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Yy1sc281V0416101PkRep1 HepG YY1 V101 1 broadPeak HepG2 YY1 281 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 853 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 YY1 281 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG YY1 V101 1\ subGroups view=Peaks factor=YY1SC281 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Yy1sc281V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF176YNV MCF-7 CTCF 5 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF176YNV) 1 853 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF176YNV)\ parent encTfChipPk off\ shortLabel MCF-7 CTCF 5\ subGroups cellType=MCF-7 factor=CTCF\ track encTfChipPkENCFF176YNV\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor1868_121Ud_7h_CNhs13556_ctss_fwd MonocyteMacrophageUdornInfluenza_07hr00minD1+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor1 (868_121:Ud_7h)_CNhs13556_13307-142I4_forward 0 853 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13307-142I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor1%20%28868_121%3aUd_7h%29.CNhs13556.13307-142I4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor1 (868_121:Ud_7h)_CNhs13556_13307-142I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13307-142I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor1868_121Ud_7h_CNhs13556_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13307-142I4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor1868_121Ud_7h_CNhs13556_tpm_fwd MonocyteMacrophageUdornInfluenza_07hr00minD1+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor1 (868_121:Ud_7h)_CNhs13556_13307-142I4_forward 1 853 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13307-142I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor1%20%28868_121%3aUd_7h%29.CNhs13556.13307-142I4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor1 (868_121:Ud_7h)_CNhs13556_13307-142I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13307-142I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor1868_121Ud_7h_CNhs13556_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13307-142I4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Yy1sc281V0416101RawRep1 HepG YY1 V101 1 bigWig 0.220425 1322.160034 HepG2 YY1 281 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 854 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 YY1 281 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG YY1 V101 1\ subGroups view=RawSignal factor=YY1SC281 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Yy1sc281V0416101RawRep1\ type bigWig 0.220425 1322.160034\ encTfChipPkENCFF372SHI MCF-7 CTCF 6 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF372SHI) 1 854 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF372SHI)\ parent encTfChipPk off\ shortLabel MCF-7 CTCF 6\ subGroups cellType=MCF-7 factor=CTCF\ track encTfChipPkENCFF372SHI\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor1868_121Ud_7h_CNhs13556_ctss_rev MonocyteMacrophageUdornInfluenza_07hr00minD1- bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor1 (868_121:Ud_7h)_CNhs13556_13307-142I4_reverse 0 854 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13307-142I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor1%20%28868_121%3aUd_7h%29.CNhs13556.13307-142I4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor1 (868_121:Ud_7h)_CNhs13556_13307-142I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13307-142I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor1868_121Ud_7h_CNhs13556_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13307-142I4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor1868_121Ud_7h_CNhs13556_tpm_rev MonocyteMacrophageUdornInfluenza_07hr00minD1- bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor1 (868_121:Ud_7h)_CNhs13556_13307-142I4_reverse 1 854 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13307-142I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor1%20%28868_121%3aUd_7h%29.CNhs13556.13307-142I4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor1 (868_121:Ud_7h)_CNhs13556_13307-142I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13307-142I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor1868_121Ud_7h_CNhs13556_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13307-142I4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Yy1sc281V0416101PkRep2 HepG YY1 V101 2 broadPeak HepG2 YY1 281 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 855 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 YY1 281 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG YY1 V101 2\ subGroups view=Peaks factor=YY1SC281 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Yy1sc281V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF572YVL MCF-7 CUX1 narrowPeak Transcription Factor ChIP-seq Peaks of CUX1 in MCF-7 from ENCODE 3 (ENCFF572YVL) 1 855 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CUX1 in MCF-7 from ENCODE 3 (ENCFF572YVL)\ parent encTfChipPk off\ shortLabel MCF-7 CUX1\ subGroups cellType=MCF-7 factor=CUX1\ track encTfChipPkENCFF572YVL\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor2150_120Ud_7h_CNhs13559_ctss_fwd MonocyteMacrophageUdornInfluenza_07hr00minD2+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor2 (150_120:Ud_7h)_CNhs13559_13319-143A7_forward 0 855 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13319-143A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor2%20%28150_120%3aUd_7h%29.CNhs13559.13319-143A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor2 (150_120:Ud_7h)_CNhs13559_13319-143A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13319-143A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor2150_120Ud_7h_CNhs13559_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13319-143A7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor2150_120Ud_7h_CNhs13559_tpm_fwd MonocyteMacrophageUdornInfluenza_07hr00minD2+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor2 (150_120:Ud_7h)_CNhs13559_13319-143A7_forward 1 855 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13319-143A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor2%20%28150_120%3aUd_7h%29.CNhs13559.13319-143A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor2 (150_120:Ud_7h)_CNhs13559_13319-143A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13319-143A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor2150_120Ud_7h_CNhs13559_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13319-143A7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Yy1sc281V0416101RawRep2 HepG YY1 V101 2 bigWig 0.237197 151.272003 HepG2 YY1 281 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 856 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 YY1 281 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG YY1 V101 2\ subGroups view=RawSignal factor=YY1SC281 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Yy1sc281V0416101RawRep2\ type bigWig 0.237197 151.272003\ encTfChipPkENCFF812MZB MCF-7 DPF2 narrowPeak Transcription Factor ChIP-seq Peaks of DPF2 in MCF-7 from ENCODE 3 (ENCFF812MZB) 1 856 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of DPF2 in MCF-7 from ENCODE 3 (ENCFF812MZB)\ parent encTfChipPk off\ shortLabel MCF-7 DPF2\ subGroups cellType=MCF-7 factor=DPF2\ track encTfChipPkENCFF812MZB\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor2150_120Ud_7h_CNhs13559_ctss_rev MonocyteMacrophageUdornInfluenza_07hr00minD2- bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor2 (150_120:Ud_7h)_CNhs13559_13319-143A7_reverse 0 856 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13319-143A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor2%20%28150_120%3aUd_7h%29.CNhs13559.13319-143A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor2 (150_120:Ud_7h)_CNhs13559_13319-143A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13319-143A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor2150_120Ud_7h_CNhs13559_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13319-143A7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor2150_120Ud_7h_CNhs13559_tpm_rev MonocyteMacrophageUdornInfluenza_07hr00minD2- bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor2 (150_120:Ud_7h)_CNhs13559_13319-143A7_reverse 1 856 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13319-143A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor2%20%28150_120%3aUd_7h%29.CNhs13559.13319-143A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor2 (150_120:Ud_7h)_CNhs13559_13319-143A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13319-143A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor2150_120Ud_7h_CNhs13559_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13319-143A7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Zbtb33Pcr1xPkRep1 HepG ZBTB33 1 broadPeak HepG2 ZBTB33 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 857 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 ZBTB33 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG ZBTB33 1\ subGroups view=Peaks factor=ZBTB33 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Zbtb33Pcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF751DRF MCF-7 E2F8 narrowPeak Transcription Factor ChIP-seq Peaks of E2F8 in MCF-7 from ENCODE 3 (ENCFF751DRF) 1 857 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of E2F8 in MCF-7 from ENCODE 3 (ENCFF751DRF)\ parent encTfChipPk off\ shortLabel MCF-7 E2F8\ subGroups cellType=MCF-7 factor=E2F8\ track encTfChipPkENCFF751DRF\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor3536_119Ud_7h_CNhs13561_ctss_fwd MonocyteMacrophageUdornInfluenza_07hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor3 (536_119:Ud_7h)_CNhs13561_13325-143B4_forward 0 857 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13325-143B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor3%20%28536_119%3aUd_7h%29.CNhs13561.13325-143B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor3 (536_119:Ud_7h)_CNhs13561_13325-143B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13325-143B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor3536_119Ud_7h_CNhs13561_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13325-143B4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor3536_119Ud_7h_CNhs13561_tpm_fwd MonocyteMacrophageUdornInfluenza_07hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor3 (536_119:Ud_7h)_CNhs13561_13325-143B4_forward 1 857 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13325-143B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor3%20%28536_119%3aUd_7h%29.CNhs13561.13325-143B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor3 (536_119:Ud_7h)_CNhs13561_13325-143B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13325-143B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor3536_119Ud_7h_CNhs13561_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13325-143B4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Zbtb33Pcr1xRawRep1 HepG ZBTB33 1 bigWig 0.179863 183.729996 HepG2 ZBTB33 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 858 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 ZBTB33 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG ZBTB33 1\ subGroups view=RawSignal factor=ZBTB33 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Zbtb33Pcr1xRawRep1\ type bigWig 0.179863 183.729996\ encTfChipPkENCFF795QZU MCF-7 E4F1 narrowPeak Transcription Factor ChIP-seq Peaks of E4F1 in MCF-7 from ENCODE 3 (ENCFF795QZU) 1 858 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of E4F1 in MCF-7 from ENCODE 3 (ENCFF795QZU)\ parent encTfChipPk off\ shortLabel MCF-7 E4F1\ subGroups cellType=MCF-7 factor=E4F1\ track encTfChipPkENCFF795QZU\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor3536_119Ud_7h_CNhs13561_ctss_rev MonocyteMacrophageUdornInfluenza_07hr00minD3- bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor3 (536_119:Ud_7h)_CNhs13561_13325-143B4_reverse 0 858 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13325-143B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor3%20%28536_119%3aUd_7h%29.CNhs13561.13325-143B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor3 (536_119:Ud_7h)_CNhs13561_13325-143B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13325-143B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor3536_119Ud_7h_CNhs13561_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13325-143B4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor3536_119Ud_7h_CNhs13561_tpm_rev MonocyteMacrophageUdornInfluenza_07hr00minD3- bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor3 (536_119:Ud_7h)_CNhs13561_13325-143B4_reverse 1 858 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13325-143B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor3%20%28536_119%3aUd_7h%29.CNhs13561.13325-143B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor3 (536_119:Ud_7h)_CNhs13561_13325-143B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13325-143B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor3536_119Ud_7h_CNhs13561_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13325-143B4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Zbtb33Pcr1xPkRep2 HepG ZBTB33 2 broadPeak HepG2 ZBTB33 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 859 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 ZBTB33 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG ZBTB33 2\ subGroups view=Peaks factor=ZBTB33 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Zbtb33Pcr1xPkRep2\ type broadPeak\ encTfChipPkENCFF386TTQ MCF-7 ELF1 narrowPeak Transcription Factor ChIP-seq Peaks of ELF1 in MCF-7 from ENCODE 3 (ENCFF386TTQ) 1 859 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ELF1 in MCF-7 from ENCODE 3 (ENCFF386TTQ)\ parent encTfChipPk off\ shortLabel MCF-7 ELF1\ subGroups cellType=MCF-7 factor=ELF1\ track encTfChipPkENCFF386TTQ\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor4227_121Ud_7h_CNhs13641_ctss_fwd MonocyteMacrophageUdornInfluenza_07hr00minD4+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor4 (227_121:Ud_7h)_CNhs13641_13313-143A1_forward 0 859 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13313-143A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor4%20%28227_121%3aUd_7h%29.CNhs13641.13313-143A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor4 (227_121:Ud_7h)_CNhs13641_13313-143A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13313-143A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor4227_121Ud_7h_CNhs13641_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13313-143A1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor4227_121Ud_7h_CNhs13641_tpm_fwd MonocyteMacrophageUdornInfluenza_07hr00minD4+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor4 (227_121:Ud_7h)_CNhs13641_13313-143A1_forward 1 859 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13313-143A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor4%20%28227_121%3aUd_7h%29.CNhs13641.13313-143A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor4 (227_121:Ud_7h)_CNhs13641_13313-143A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13313-143A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor4227_121Ud_7h_CNhs13641_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13313-143A1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Zbtb33Pcr1xRawRep2 HepG ZBTB33 2 bigWig 0.144435 400.373993 HepG2 ZBTB33 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 860 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 ZBTB33 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG ZBTB33 2\ subGroups view=RawSignal factor=ZBTB33 cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Zbtb33Pcr1xRawRep2\ type bigWig 0.144435 400.373993\ encTfChipPkENCFF267FXT MCF-7 ELK1 narrowPeak Transcription Factor ChIP-seq Peaks of ELK1 in MCF-7 from ENCODE 3 (ENCFF267FXT) 1 860 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ELK1 in MCF-7 from ENCODE 3 (ENCFF267FXT)\ parent encTfChipPk off\ shortLabel MCF-7 ELK1\ subGroups cellType=MCF-7 factor=ELK1\ track encTfChipPkENCFF267FXT\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor4227_121Ud_7h_CNhs13641_ctss_rev MonocyteMacrophageUdornInfluenza_07hr00minD4- bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor4 (227_121:Ud_7h)_CNhs13641_13313-143A1_reverse 0 860 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13313-143A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor4%20%28227_121%3aUd_7h%29.CNhs13641.13313-143A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor4 (227_121:Ud_7h)_CNhs13641_13313-143A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13313-143A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor4227_121Ud_7h_CNhs13641_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13313-143A1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor4227_121Ud_7h_CNhs13641_tpm_rev MonocyteMacrophageUdornInfluenza_07hr00minD4- bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor4 (227_121:Ud_7h)_CNhs13641_13313-143A1_reverse 1 860 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13313-143A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor4%20%28227_121%3aUd_7h%29.CNhs13641.13313-143A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor4 (227_121:Ud_7h)_CNhs13641_13313-143A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13313-143A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor4227_121Ud_7h_CNhs13641_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13313-143A1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Zbtb33V0416101PkRep1 HepG ZBTB33 1 broadPeak HepG2 ZBTB33 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 861 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 ZBTB33 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG ZBTB33 1\ subGroups view=Peaks factor=ZBTB33 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Zbtb33V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF193FZK MCF-7 ESRRA 1 narrowPeak Transcription Factor ChIP-seq Peaks of ESRRA in MCF-7 from ENCODE 3 (ENCFF193FZK) 1 861 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESRRA in MCF-7 from ENCODE 3 (ENCFF193FZK)\ parent encTfChipPk off\ shortLabel MCF-7 ESRRA 1\ subGroups cellType=MCF-7 factor=ESRRA\ track encTfChipPkENCFF193FZK\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor1868_121Ud_24h_CNhs13557_ctss_fwd MonocyteMacrophageUdornInfluenza_24hr00minD1+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor1 (868_121:Ud_24h)_CNhs13557_13308-142I5_forward 0 861 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13308-142I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aUd_24h%29.CNhs13557.13308-142I5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor1 (868_121:Ud_24h)_CNhs13557_13308-142I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13308-142I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor1868_121Ud_24h_CNhs13557_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13308-142I5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor1868_121Ud_24h_CNhs13557_tpm_fwd MonocyteMacrophageUdornInfluenza_24hr00minD1+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor1 (868_121:Ud_24h)_CNhs13557_13308-142I5_forward 1 861 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13308-142I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aUd_24h%29.CNhs13557.13308-142I5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor1 (868_121:Ud_24h)_CNhs13557_13308-142I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13308-142I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor1868_121Ud_24h_CNhs13557_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13308-142I5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Zbtb33V0416101RawRep1 HepG ZBTB33 1 bigWig 0.228820 144.899994 HepG2 ZBTB33 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 862 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 ZBTB33 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG ZBTB33 1\ subGroups view=RawSignal factor=ZBTB33 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Zbtb33V0416101RawRep1\ type bigWig 0.228820 144.899994\ encTfChipPkENCFF044NEB MCF-7 ESRRA 2 narrowPeak Transcription Factor ChIP-seq Peaks of ESRRA in MCF-7 from ENCODE 3 (ENCFF044NEB) 1 862 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESRRA in MCF-7 from ENCODE 3 (ENCFF044NEB)\ parent encTfChipPk off\ shortLabel MCF-7 ESRRA 2\ subGroups cellType=MCF-7 factor=ESRRA\ track encTfChipPkENCFF044NEB\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor1868_121Ud_24h_CNhs13557_ctss_rev MonocyteMacrophageUdornInfluenza_24hr00minD1- bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor1 (868_121:Ud_24h)_CNhs13557_13308-142I5_reverse 0 862 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13308-142I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aUd_24h%29.CNhs13557.13308-142I5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor1 (868_121:Ud_24h)_CNhs13557_13308-142I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13308-142I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor1868_121Ud_24h_CNhs13557_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13308-142I5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor1868_121Ud_24h_CNhs13557_tpm_rev MonocyteMacrophageUdornInfluenza_24hr00minD1- bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor1 (868_121:Ud_24h)_CNhs13557_13308-142I5_reverse 1 862 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13308-142I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aUd_24h%29.CNhs13557.13308-142I5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor1 (868_121:Ud_24h)_CNhs13557_13308-142I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13308-142I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor1868_121Ud_24h_CNhs13557_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13308-142I5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Zbtb33V0416101PkRep2 HepG ZBTB33 2 broadPeak HepG2 ZBTB33 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 863 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 ZBTB33 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG ZBTB33 2\ subGroups view=Peaks factor=ZBTB33 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Zbtb33V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF965AIZ MCF-7 FOS narrowPeak Transcription Factor ChIP-seq Peaks of FOS in MCF-7 from ENCODE 3 (ENCFF965AIZ) 1 863 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOS in MCF-7 from ENCODE 3 (ENCFF965AIZ)\ parent encTfChipPk off\ shortLabel MCF-7 FOS\ subGroups cellType=MCF-7 factor=FOS\ track encTfChipPkENCFF965AIZ\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor2150_120Ud_24h_CNhs13560_ctss_fwd MonocyteMacrophageUdornInfluenza_24hr00minD2+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor2 (150_120:Ud_24h)_CNhs13560_13320-143A8_forward 0 863 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13320-143A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aUd_24h%29.CNhs13560.13320-143A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor2 (150_120:Ud_24h)_CNhs13560_13320-143A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13320-143A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor2150_120Ud_24h_CNhs13560_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13320-143A8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor2150_120Ud_24h_CNhs13560_tpm_fwd MonocyteMacrophageUdornInfluenza_24hr00minD2+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor2 (150_120:Ud_24h)_CNhs13560_13320-143A8_forward 1 863 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13320-143A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aUd_24h%29.CNhs13560.13320-143A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor2 (150_120:Ud_24h)_CNhs13560_13320-143A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13320-143A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor2150_120Ud_24h_CNhs13560_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13320-143A8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Zbtb33V0416101RawRep2 HepG ZBTB33 2 bigWig 0.190733 205.705002 HepG2 ZBTB33 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 864 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 ZBTB33 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG ZBTB33 2\ subGroups view=RawSignal factor=ZBTB33 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Zbtb33V0416101RawRep2\ type bigWig 0.190733 205.705002\ encTfChipPkENCFF596OJV MCF-7 FOXA1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in MCF-7 from ENCODE 3 (ENCFF596OJV) 1 864 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in MCF-7 from ENCODE 3 (ENCFF596OJV)\ parent encTfChipPk off\ shortLabel MCF-7 FOXA1\ subGroups cellType=MCF-7 factor=FOXA1\ track encTfChipPkENCFF596OJV\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor2150_120Ud_24h_CNhs13560_ctss_rev MonocyteMacrophageUdornInfluenza_24hr00minD2- bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor2 (150_120:Ud_24h)_CNhs13560_13320-143A8_reverse 0 864 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13320-143A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aUd_24h%29.CNhs13560.13320-143A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor2 (150_120:Ud_24h)_CNhs13560_13320-143A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13320-143A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor2150_120Ud_24h_CNhs13560_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13320-143A8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor2150_120Ud_24h_CNhs13560_tpm_rev MonocyteMacrophageUdornInfluenza_24hr00minD2- bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor2 (150_120:Ud_24h)_CNhs13560_13320-143A8_reverse 1 864 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13320-143A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aUd_24h%29.CNhs13560.13320-143A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor2 (150_120:Ud_24h)_CNhs13560_13320-143A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13320-143A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor2150_120Ud_24h_CNhs13560_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13320-143A8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Zbtb7aV0416101PkRep1 HepG ZBTB7A 1 broadPeak HepG2 ZBTB7A v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 865 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 ZBTB7A v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG ZBTB7A 1\ subGroups view=Peaks factor=ZBTB7ASC34508 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Zbtb7aV0416101PkRep1\ type broadPeak\ encTfChipPkENCFF671BJT MCF-7 FOXK2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXK2 in MCF-7 from ENCODE 3 (ENCFF671BJT) 1 865 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXK2 in MCF-7 from ENCODE 3 (ENCFF671BJT)\ parent encTfChipPk off\ shortLabel MCF-7 FOXK2\ subGroups cellType=MCF-7 factor=FOXK2\ track encTfChipPkENCFF671BJT\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_ctss_fwd MonocyteMacrophageUdornInfluenza_24hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_forward 0 865 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aUd_24h%29.CNhs13562.13326-143B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13326-143B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_tpm_fwd MonocyteMacrophageUdornInfluenza_24hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_forward 1 865 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aUd_24h%29.CNhs13562.13326-143B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13326-143B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Zbtb7aV0416101RawRep1 HepG ZBTB7A 1 bigWig 0.222750 139.218994 HepG2 ZBTB7A v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 866 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 ZBTB7A v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG ZBTB7A 1\ subGroups view=RawSignal factor=ZBTB7ASC34508 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Zbtb7aV0416101RawRep1\ type bigWig 0.222750 139.218994\ encTfChipPkENCFF313TUJ MCF-7 GATA3 narrowPeak Transcription Factor ChIP-seq Peaks of GATA3 in MCF-7 from ENCODE 3 (ENCFF313TUJ) 1 866 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATA3 in MCF-7 from ENCODE 3 (ENCFF313TUJ)\ parent encTfChipPk off\ shortLabel MCF-7 GATA3\ subGroups cellType=MCF-7 factor=GATA3\ track encTfChipPkENCFF313TUJ\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_ctss_rev MonocyteMacrophageUdornInfluenza_24hr00minD3- bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_reverse 0 866 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aUd_24h%29.CNhs13562.13326-143B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13326-143B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_tpm_rev MonocyteMacrophageUdornInfluenza_24hr00minD3- bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_reverse 1 866 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aUd_24h%29.CNhs13562.13326-143B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13326-143B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Zbtb7aV0416101PkRep2 HepG ZBTB7A 2 broadPeak HepG2 ZBTB7A v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 867 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 ZBTB7A v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG ZBTB7A 2\ subGroups view=Peaks factor=ZBTB7ASC34508 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Zbtb7aV0416101PkRep2\ type broadPeak\ encTfChipPkENCFF231VAA MCF-7 GATAD2B 1 narrowPeak Transcription Factor ChIP-seq Peaks of GATAD2B in MCF-7 from ENCODE 3 (ENCFF231VAA) 1 867 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATAD2B in MCF-7 from ENCODE 3 (ENCFF231VAA)\ parent encTfChipPk off\ shortLabel MCF-7 GATAD2B 1\ subGroups cellType=MCF-7 factor=GATAD2B\ track encTfChipPkENCFF231VAA\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_ctss_fwd Tc:MdmToMock_00hr00minD2+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_forward 0 867 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aMI_0h%29.CNhs13645.13316-143A4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13316-143A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_tpm_fwd Tc:MdmToMock_00hr00minD2+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_forward 1 867 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aMI_0h%29.CNhs13645.13316-143A4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13316-143A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Zbtb7aV0416101RawRep2 HepG ZBTB7A 2 bigWig 0.169342 172.220993 HepG2 ZBTB7A v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 868 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 ZBTB7A v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG ZBTB7A 2\ subGroups view=RawSignal factor=ZBTB7ASC34508 cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Zbtb7aV0416101RawRep2\ type bigWig 0.169342 172.220993\ encTfChipPkENCFF265NSP MCF-7 GATAD2B 2 narrowPeak Transcription Factor ChIP-seq Peaks of GATAD2B in MCF-7 from ENCODE 3 (ENCFF265NSP) 1 868 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATAD2B in MCF-7 from ENCODE 3 (ENCFF265NSP)\ parent encTfChipPk off\ shortLabel MCF-7 GATAD2B 2\ subGroups cellType=MCF-7 factor=GATAD2B\ track encTfChipPkENCFF265NSP\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_ctss_rev Tc:MdmToMock_00hr00minD2- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_reverse 0 868 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aMI_0h%29.CNhs13645.13316-143A4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13316-143A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_tpm_rev Tc:MdmToMock_00hr00minD2- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_reverse 1 868 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aMI_0h%29.CNhs13645.13316-143A4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13316-143A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Zeb1V0422111PkRep1 HepG ZEB1 V11 1 broadPeak HepG2 ZEB1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 869 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 ZEB1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG ZEB1 V11 1\ subGroups view=Peaks factor=ZEB1SC25388 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Zeb1V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF365WFM MCF-7 HCFC1 narrowPeak Transcription Factor ChIP-seq Peaks of HCFC1 in MCF-7 from ENCODE 3 (ENCFF365WFM) 1 869 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HCFC1 in MCF-7 from ENCODE 3 (ENCFF365WFM)\ parent encTfChipPk off\ shortLabel MCF-7 HCFC1\ subGroups cellType=MCF-7 factor=HCFC1\ track encTfChipPkENCFF365WFM\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_ctss_fwd Tc:MdmToMock_00hr00minD3+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_forward 0 869 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aMI_0h%29.CNhs13649.13322-143B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13322-143B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_tpm_fwd Tc:MdmToMock_00hr00minD3+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_forward 1 869 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aMI_0h%29.CNhs13649.13322-143B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13322-143B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Zeb1V0422111RawRep1 HepG ZEB1 V11 1 bigWig 1.000000 7308.000000 HepG2 ZEB1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 870 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 ZEB1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG ZEB1 V11 1\ subGroups view=RawSignal factor=ZEB1SC25388 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2Zeb1V0422111RawRep1\ type bigWig 1.000000 7308.000000\ encTfChipPkENCFF902IMW MCF-7 HES1 narrowPeak Transcription Factor ChIP-seq Peaks of HES1 in MCF-7 from ENCODE 3 (ENCFF902IMW) 1 870 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HES1 in MCF-7 from ENCODE 3 (ENCFF902IMW)\ parent encTfChipPk off\ shortLabel MCF-7 HES1\ subGroups cellType=MCF-7 factor=HES1\ track encTfChipPkENCFF902IMW\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_ctss_rev Tc:MdmToMock_00hr00minD3- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_reverse 0 870 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aMI_0h%29.CNhs13649.13322-143B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13322-143B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_tpm_rev Tc:MdmToMock_00hr00minD3- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_reverse 1 870 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aMI_0h%29.CNhs13649.13322-143B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13322-143B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Zeb1V0422111PkRep2 HepG ZEB1 V11 2 broadPeak HepG2 ZEB1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 871 189 0 157 222 127 206 0 0 0 regulation 1 color 189,0,157\ longLabel HepG2 ZEB1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HepG ZEB1 V11 2\ subGroups view=Peaks factor=ZEB1SC25388 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Zeb1V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF836HHL MCF-7 HSF1 narrowPeak Transcription Factor ChIP-seq Peaks of HSF1 in MCF-7 from ENCODE 3 (ENCFF836HHL) 1 871 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HSF1 in MCF-7 from ENCODE 3 (ENCFF836HHL)\ parent encTfChipPk off\ shortLabel MCF-7 HSF1\ subGroups cellType=MCF-7 factor=HSF1\ track encTfChipPkENCFF836HHL\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_ctss_fwd Tc:MdmToMock_00hr00minD4+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_forward 0 871 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aMI_0h%29.CNhs13638.13310-142I7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13310-142I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_tpm_fwd Tc:MdmToMock_00hr00minD4+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_forward 1 871 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aMI_0h%29.CNhs13638.13310-142I7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13310-142I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2Zeb1V0422111RawRep2 HepG ZEB1 V11 2 bigWig 1.000000 8103.000000 HepG2 ZEB1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 872 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 ZEB1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG ZEB1 V11 2\ subGroups view=RawSignal factor=ZEB1SC25388 cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2Zeb1V0422111RawRep2\ type bigWig 1.000000 8103.000000\ encTfChipPkENCFF314KRZ MCF-7 JUN narrowPeak Transcription Factor ChIP-seq Peaks of JUN in MCF-7 from ENCODE 3 (ENCFF314KRZ) 1 872 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUN in MCF-7 from ENCODE 3 (ENCFF314KRZ)\ parent encTfChipPk off\ shortLabel MCF-7 JUN\ subGroups cellType=MCF-7 factor=JUN\ track encTfChipPkENCFF314KRZ\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_ctss_rev Tc:MdmToMock_00hr00minD4- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_reverse 0 872 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aMI_0h%29.CNhs13638.13310-142I7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13310-142I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_tpm_rev Tc:MdmToMock_00hr00minD4- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_reverse 1 872 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aMI_0h%29.CNhs13638.13310-142I7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13310-142I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2RxlchPcr1xRawRep1 HepG RvXL PCR1 1 bigWig 0.149944 122.167000 HepG2 Control PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 873 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Control PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG RvXL PCR1 1\ subGroups view=RawSignal factor=zRXLCH cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2RxlchPcr1xRawRep1\ type bigWig 0.149944 122.167000\ encTfChipPkENCFF298VCE MCF-7 MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in MCF-7 from ENCODE 3 (ENCFF298VCE) 1 873 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MAFK in MCF-7 from ENCODE 3 (ENCFF298VCE)\ parent encTfChipPk off\ shortLabel MCF-7 MAFK\ subGroups cellType=MCF-7 factor=MAFK\ track encTfChipPkENCFF298VCE\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_ctss_fwd Tc:MdmToMock_24hr00minD1+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_forward 0 873 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aMI_24h%29.CNhs13693.13309-142I6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13309-142I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_tpm_fwd Tc:MdmToMock_24hr00minD1+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_forward 1 873 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aMI_24h%29.CNhs13693.13309-142I6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13309-142I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2RxlchPcr1xRawRep2 HepG RvXL PCR1 2 bigWig 0.104589 143.966995 HepG2 Control PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 874 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Control PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG RvXL PCR1 2\ subGroups view=RawSignal factor=zRXLCH cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2RxlchPcr1xRawRep2\ type bigWig 0.104589 143.966995\ encTfChipPkENCFF474AYD MCF-7 MBD2 narrowPeak Transcription Factor ChIP-seq Peaks of MBD2 in MCF-7 from ENCODE 3 (ENCFF474AYD) 1 874 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MBD2 in MCF-7 from ENCODE 3 (ENCFF474AYD)\ parent encTfChipPk off\ shortLabel MCF-7 MBD2\ subGroups cellType=MCF-7 factor=MBD2\ track encTfChipPkENCFF474AYD\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_ctss_rev Tc:MdmToMock_24hr00minD1- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_reverse 0 874 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aMI_24h%29.CNhs13693.13309-142I6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13309-142I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_tpm_rev Tc:MdmToMock_24hr00minD1- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_reverse 1 874 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aMI_24h%29.CNhs13693.13309-142I6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13309-142I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2RxlchPcr1xRawRep3 HepG RvXL PCR1 3 bigWig 0.209759 74.936302 HepG2 Control PCR1x ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB 2 875 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Control PCR1x ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG RvXL PCR1 3\ subGroups view=RawSignal factor=zRXLCH cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep3\ track wgEncodeHaibTfbsHepg2RxlchPcr1xRawRep3\ type bigWig 0.209759 74.936302\ encTfChipPkENCFF686LJE MCF-7 MLLT1 narrowPeak Transcription Factor ChIP-seq Peaks of MLLT1 in MCF-7 from ENCODE 3 (ENCFF686LJE) 1 875 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MLLT1 in MCF-7 from ENCODE 3 (ENCFF686LJE)\ parent encTfChipPk off\ shortLabel MCF-7 MLLT1\ subGroups cellType=MCF-7 factor=MLLT1\ track encTfChipPkENCFF686LJE\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_ctss_fwd Tc:MdmToMock_24hr00minD2+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_forward 0 875 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aMI_24h%29.CNhs13648.13321-143A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13321-143A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_tpm_fwd Tc:MdmToMock_24hr00minD2+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_forward 1 875 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aMI_24h%29.CNhs13648.13321-143A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13321-143A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2RxlchPcr1xRawRep4 HepG RvXL PCR1 4 bigWig 0.261423 98.883301 HepG2 Control PCR1x ChIP-seq Raw Signal Rep 4 from ENCODE/HAIB 2 876 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Control PCR1x ChIP-seq Raw Signal Rep 4 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG RvXL PCR1 4\ subGroups view=RawSignal factor=zRXLCH cellType=t2HEPG2 protocol=PCR1X treatment=NONE rep=rep4\ track wgEncodeHaibTfbsHepg2RxlchPcr1xRawRep4\ type bigWig 0.261423 98.883301\ encTfChipPkENCFF027CYL MCF-7 MNT 1 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in MCF-7 from ENCODE 3 (ENCFF027CYL) 1 876 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MNT in MCF-7 from ENCODE 3 (ENCFF027CYL)\ parent encTfChipPk off\ shortLabel MCF-7 MNT 1\ subGroups cellType=MCF-7 factor=MNT\ track encTfChipPkENCFF027CYL\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_ctss_rev Tc:MdmToMock_24hr00minD2- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_reverse 0 876 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aMI_24h%29.CNhs13648.13321-143A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13321-143A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_tpm_rev Tc:MdmToMock_24hr00minD2- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_reverse 1 876 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aMI_24h%29.CNhs13648.13321-143A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13321-143A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2RxlchPcr2xRawRep1 HepG RvXL PCR2 1 bigWig 0.135909 68.022697 HepG2 Control PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 877 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Control PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG RvXL PCR2 1\ subGroups view=RawSignal factor=zRXLCH cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2RxlchPcr2xRawRep1\ type bigWig 0.135909 68.022697\ encTfChipPkENCFF628SBD MCF-7 MNT 2 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in MCF-7 from ENCODE 3 (ENCFF628SBD) 1 877 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MNT in MCF-7 from ENCODE 3 (ENCFF628SBD)\ parent encTfChipPk off\ shortLabel MCF-7 MNT 2\ subGroups cellType=MCF-7 factor=MNT\ track encTfChipPkENCFF628SBD\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_ctss_fwd Tc:MdmToMock_24hr00minD3+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_forward 0 877 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aMI_24h%29.CNhs13652.13327-143B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13327-143B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_tpm_fwd Tc:MdmToMock_24hr00minD3+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_forward 1 877 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aMI_24h%29.CNhs13652.13327-143B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13327-143B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2RxlchPcr2xRawRep2 HepG RvXL PCR2 2 bigWig 0.121756 77.375702 HepG2 Control PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 878 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Control PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG RvXL PCR2 2\ subGroups view=RawSignal factor=zRXLCH cellType=t2HEPG2 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2RxlchPcr2xRawRep2\ type bigWig 0.121756 77.375702\ encTfChipPkENCFF965ZRH MCF-7 MTA1 narrowPeak Transcription Factor ChIP-seq Peaks of MTA1 in MCF-7 from ENCODE 3 (ENCFF965ZRH) 1 878 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MTA1 in MCF-7 from ENCODE 3 (ENCFF965ZRH)\ parent encTfChipPk off\ shortLabel MCF-7 MTA1\ subGroups cellType=MCF-7 factor=MTA1\ track encTfChipPkENCFF965ZRH\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_ctss_rev Tc:MdmToMock_24hr00minD3- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_reverse 0 878 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aMI_24h%29.CNhs13652.13327-143B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13327-143B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_tpm_rev Tc:MdmToMock_24hr00minD3- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_reverse 1 878 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aMI_24h%29.CNhs13652.13327-143B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13327-143B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2RxlchV0416101RawRep1 HepG RvXL V101 1 bigWig 0.151929 145.395996 HepG2 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 879 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG RvXL V101 1\ subGroups view=RawSignal factor=zRXLCH cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2RxlchV0416101RawRep1\ type bigWig 0.151929 145.395996\ encTfChipPkENCFF997RPK MCF-7 MTA2 narrowPeak Transcription Factor ChIP-seq Peaks of MTA2 in MCF-7 from ENCODE 3 (ENCFF997RPK) 1 879 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MTA2 in MCF-7 from ENCODE 3 (ENCFF997RPK)\ parent encTfChipPk off\ shortLabel MCF-7 MTA2\ subGroups cellType=MCF-7 factor=MTA2\ track encTfChipPkENCFF997RPK\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_ctss_fwd Tc:MdmToMock_24hr00minD4+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_forward 0 879 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor4%20%28227_121%3aMI_24h%29.CNhs13644.13315-143A3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13315-143A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_tpm_fwd Tc:MdmToMock_24hr00minD4+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_forward 1 879 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor4%20%28227_121%3aMI_24h%29.CNhs13644.13315-143A3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13315-143A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2RxlchV0416101RawRep2 HepG RvXL V101 2 bigWig 0.143399 181.113007 HepG2 Control v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 880 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Control v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG RvXL V101 2\ subGroups view=RawSignal factor=zRXLCH cellType=t2HEPG2 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2RxlchV0416101RawRep2\ type bigWig 0.143399 181.113007\ encTfChipPkENCFF527ALV MCF-7 MTA3 narrowPeak Transcription Factor ChIP-seq Peaks of MTA3 in MCF-7 from ENCODE 3 (ENCFF527ALV) 1 880 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MTA3 in MCF-7 from ENCODE 3 (ENCFF527ALV)\ parent encTfChipPk off\ shortLabel MCF-7 MTA3\ subGroups cellType=MCF-7 factor=MTA3\ track encTfChipPkENCFF527ALV\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_ctss_rev Tc:MdmToMock_24hr00minD4- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_reverse 0 880 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor4%20%28227_121%3aMI_24h%29.CNhs13644.13315-143A3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13315-143A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_tpm_rev Tc:MdmToMock_24hr00minD4- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_reverse 1 880 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor4%20%28227_121%3aMI_24h%29.CNhs13644.13315-143A3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13315-143A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2RxlchV0422111RawRep1 HepG RvXL V11 1 bigWig 0.084620 145.080002 HepG2 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 881 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG RvXL V11 1\ subGroups view=RawSignal factor=zRXLCH cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHepg2RxlchV0422111RawRep1\ type bigWig 0.084620 145.080002\ encTfChipPkENCFF021KDL MCF-7 MYC 1 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF021KDL) 1 881 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF021KDL)\ parent encTfChipPk off\ shortLabel MCF-7 MYC 1\ subGroups cellType=MCF-7 factor=MYC\ track encTfChipPkENCFF021KDL\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_ctss_fwd Tc:MdmToLps_00hr00minD1+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_forward 0 881 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor1%20%28t1%20Subject1%29.CNhs11941.12698-135D7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12698-135D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_tpm_fwd Tc:MdmToLps_00hr00minD1+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_forward 1 881 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor1%20%28t1%20Subject1%29.CNhs11941.12698-135D7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12698-135D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2RxlchV0422111RawRep2 HepG RvXL V11 2 bigWig 1.000000 17863.000000 HepG2 Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 882 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG RvXL V11 2\ subGroups view=RawSignal factor=zRXLCH cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHepg2RxlchV0422111RawRep2\ type bigWig 1.000000 17863.000000\ encTfChipPkENCFF682AWN MCF-7 MYC 2 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF682AWN) 1 882 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF682AWN)\ parent encTfChipPk off\ shortLabel MCF-7 MYC 2\ subGroups cellType=MCF-7 factor=MYC\ track encTfChipPkENCFF682AWN\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_ctss_rev Tc:MdmToLps_00hr00minD1- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_reverse 0 882 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor1%20%28t1%20Subject1%29.CNhs11941.12698-135D7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12698-135D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_tpm_rev Tc:MdmToLps_00hr00minD1- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_reverse 1 882 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor1%20%28t1%20Subject1%29.CNhs11941.12698-135D7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12698-135D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHepg2RxlchV0422111RawRep3 HepG RvXL V11 3 bigWig 1.000000 22433.000000 HepG2 Control v042211.1 ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB 2 883 189 0 157 222 127 206 0 0 0 regulation 0 color 189,0,157\ longLabel HepG2 Control v042211.1 ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HepG RvXL V11 3\ subGroups view=RawSignal factor=zRXLCH cellType=t2HEPG2 protocol=V0422111 treatment=NONE rep=rep3\ track wgEncodeHaibTfbsHepg2RxlchV0422111RawRep3\ type bigWig 1.000000 22433.000000\ encTfChipPkENCFF695IQU MCF-7 MYC 3 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF695IQU) 1 883 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF695IQU)\ parent encTfChipPk off\ shortLabel MCF-7 MYC 3\ subGroups cellType=MCF-7 factor=MYC\ track encTfChipPkENCFF695IQU\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_ctss_fwd Tc:MdmToLps_00hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_forward 0 883 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor2%20%28t1%20Subject2%29.CNhs13379.12796-136F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12796-136F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_tpm_fwd Tc:MdmToLps_00hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_forward 1 883 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor2%20%28t1%20Subject2%29.CNhs13379.12796-136F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12796-136F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHuvecPol2Pcr1xPkRep1 HUVEC Pol2 PCR1 1 broadPeak HUVEC Pol2 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 884 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC Pol2 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HUVEC Pol2 PCR1 1\ subGroups view=Peaks factor=POL2 cellType=t2HUVEC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHuvecPol2Pcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF518OUJ MCF-7 NBN narrowPeak Transcription Factor ChIP-seq Peaks of NBN in MCF-7 from ENCODE 3 (ENCFF518OUJ) 1 884 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NBN in MCF-7 from ENCODE 3 (ENCFF518OUJ)\ parent encTfChipPk off\ shortLabel MCF-7 NBN\ subGroups cellType=MCF-7 factor=NBN\ track encTfChipPkENCFF518OUJ\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_ctss_rev Tc:MdmToLps_00hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_reverse 0 884 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor2%20%28t1%20Subject2%29.CNhs13379.12796-136F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12796-136F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_tpm_rev Tc:MdmToLps_00hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_reverse 1 884 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor2%20%28t1%20Subject2%29.CNhs13379.12796-136F6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12796-136F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHuvecPol2Pcr1xRawRep1 HUVEC Pol2 PCR1 1 bigWig 0.311226 442.252991 HUVEC Pol2 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 885 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Pol2 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HUVEC Pol2 PCR1 1\ subGroups view=RawSignal factor=POL2 cellType=t2HUVEC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHuvecPol2Pcr1xRawRep1\ type bigWig 0.311226 442.252991\ encTfChipPkENCFF117ZKS MCF-7 NCOA3 1 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA3 in MCF-7 from ENCODE 3 (ENCFF117ZKS) 1 885 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NCOA3 in MCF-7 from ENCODE 3 (ENCFF117ZKS)\ parent encTfChipPk off\ shortLabel MCF-7 NCOA3 1\ subGroups cellType=MCF-7 factor=NCOA3\ track encTfChipPkENCFF117ZKS\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_ctss_fwd Tc:MdmToLps_00hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_forward 0 885 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor3%20%28t1%20Subject3%29.CNhs13174.12894-137H5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12894-137H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_tpm_fwd Tc:MdmToLps_00hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_forward 1 885 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor3%20%28t1%20Subject3%29.CNhs13174.12894-137H5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12894-137H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHuvecPol2Pcr1xPkRep2 HUVEC Pol2 PCR1 2 broadPeak HUVEC Pol2 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 886 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC Pol2 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HUVEC Pol2 PCR1 2\ subGroups view=Peaks factor=POL2 cellType=t2HUVEC protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHuvecPol2Pcr1xPkRep2\ type broadPeak\ encTfChipPkENCFF821FWZ MCF-7 NCOA3 2 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA3 in MCF-7 from ENCODE 3 (ENCFF821FWZ) 1 886 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NCOA3 in MCF-7 from ENCODE 3 (ENCFF821FWZ)\ parent encTfChipPk off\ shortLabel MCF-7 NCOA3 2\ subGroups cellType=MCF-7 factor=NCOA3\ track encTfChipPkENCFF821FWZ\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_ctss_rev Tc:MdmToLps_00hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_reverse 0 886 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor3%20%28t1%20Subject3%29.CNhs13174.12894-137H5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12894-137H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_tpm_rev Tc:MdmToLps_00hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_reverse 1 886 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor3%20%28t1%20Subject3%29.CNhs13174.12894-137H5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12894-137H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHuvecPol2Pcr1xRawRep2 HUVEC Pol2 PCR1 2 bigWig 0.127075 330.141998 HUVEC Pol2 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 887 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Pol2 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HUVEC Pol2 PCR1 2\ subGroups view=RawSignal factor=POL2 cellType=t2HUVEC protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHuvecPol2Pcr1xRawRep2\ type bigWig 0.127075 330.141998\ encTfChipPkENCFF587EOD MCF-7 NEUROD1 narrowPeak Transcription Factor ChIP-seq Peaks of NEUROD1 in MCF-7 from ENCODE 3 (ENCFF587EOD) 1 887 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NEUROD1 in MCF-7 from ENCODE 3 (ENCFF587EOD)\ parent encTfChipPk off\ shortLabel MCF-7 NEUROD1\ subGroups cellType=MCF-7 factor=NEUROD1\ track encTfChipPkENCFF587EOD\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_ctss_fwd Tc:MdmToLps_00hr15minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_forward 0 887 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor2%20%28t2%20Subject2%29.CNhs13380.12797-136F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12797-136F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr15minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_tpm_fwd Tc:MdmToLps_00hr15minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_forward 1 887 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor2%20%28t2%20Subject2%29.CNhs13380.12797-136F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12797-136F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr15minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHuvecPol24h8V0416101PkRep1 HUVEC Pol2-4H8 V101 1 broadPeak HUVEC Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 888 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HUVEC Pol2-4H8 V101 1\ subGroups view=Peaks factor=POL24H8 cellType=t2HUVEC protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHuvecPol24h8V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF879VLB MCF-7 NFIB 1 narrowPeak Transcription Factor ChIP-seq Peaks of NFIB in MCF-7 from ENCODE 3 (ENCFF879VLB) 1 888 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NFIB in MCF-7 from ENCODE 3 (ENCFF879VLB)\ parent encTfChipPk off\ shortLabel MCF-7 NFIB 1\ subGroups cellType=MCF-7 factor=NFIB\ track encTfChipPkENCFF879VLB\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_ctss_rev Tc:MdmToLps_00hr15minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_reverse 0 888 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor2%20%28t2%20Subject2%29.CNhs13380.12797-136F7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12797-136F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr15minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_tpm_rev Tc:MdmToLps_00hr15minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_reverse 1 888 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor2%20%28t2%20Subject2%29.CNhs13380.12797-136F7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12797-136F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr15minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHuvecPol24h8V0416101RawRep1 HUVEC Pol2-4H8 V101 1 bigWig 0.305485 239.653000 HUVEC Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 889 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HUVEC Pol2-4H8 V101 1\ subGroups view=RawSignal factor=POL24H8 cellType=t2HUVEC protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHuvecPol24h8V0416101RawRep1\ type bigWig 0.305485 239.653000\ encTfChipPkENCFF817RST MCF-7 NFIB 2 narrowPeak Transcription Factor ChIP-seq Peaks of NFIB in MCF-7 from ENCODE 3 (ENCFF817RST) 1 889 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NFIB in MCF-7 from ENCODE 3 (ENCFF817RST)\ parent encTfChipPk off\ shortLabel MCF-7 NFIB 2\ subGroups cellType=MCF-7 factor=NFIB\ track encTfChipPkENCFF817RST\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_ctss_fwd Tc:MdmToLps_00hr15minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_forward 0 889 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor3%20%28t2%20Subject3%29.CNhs13175.12895-137H6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12895-137H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr15minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_tpm_fwd Tc:MdmToLps_00hr15minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_forward 1 889 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor3%20%28t2%20Subject3%29.CNhs13175.12895-137H6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12895-137H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr15minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHuvecPol24h8V0416101PkRep2 HUVEC Pol2-4H8 V101 2 broadPeak HUVEC Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 890 224 75 0 239 165 127 0 0 0 regulation 1 color 224,75,0\ longLabel HUVEC Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HUVEC Pol2-4H8 V101 2\ subGroups view=Peaks factor=POL24H8 cellType=t2HUVEC protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHuvecPol24h8V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF446FHX MCF-7 NFRKB narrowPeak Transcription Factor ChIP-seq Peaks of NFRKB in MCF-7 from ENCODE 3 (ENCFF446FHX) 1 890 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NFRKB in MCF-7 from ENCODE 3 (ENCFF446FHX)\ parent encTfChipPk off\ shortLabel MCF-7 NFRKB\ subGroups cellType=MCF-7 factor=NFRKB\ track encTfChipPkENCFF446FHX\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_ctss_rev Tc:MdmToLps_00hr15minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_reverse 0 890 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor3%20%28t2%20Subject3%29.CNhs13175.12895-137H6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12895-137H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr15minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_tpm_rev Tc:MdmToLps_00hr15minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_reverse 1 890 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor3%20%28t2%20Subject3%29.CNhs13175.12895-137H6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12895-137H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr15minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHuvecPol24h8V0416101RawRep2 HUVEC Pol2-4H8 V101 2 bigWig 0.401810 219.789993 HUVEC Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 891 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HUVEC Pol2-4H8 V101 2\ subGroups view=RawSignal factor=POL24H8 cellType=t2HUVEC protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHuvecPol24h8V0416101RawRep2\ type bigWig 0.401810 219.789993\ encTfChipPkENCFF839EPV MCF-7 NFXL1 narrowPeak Transcription Factor ChIP-seq Peaks of NFXL1 in MCF-7 from ENCODE 3 (ENCFF839EPV) 1 891 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NFXL1 in MCF-7 from ENCODE 3 (ENCFF839EPV)\ parent encTfChipPk off\ shortLabel MCF-7 NFXL1\ subGroups cellType=MCF-7 factor=NFXL1\ track encTfChipPkENCFF839EPV\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_ctss_fwd Tc:MdmToLps_00hr30minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_forward 0 891 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor2%20%28t3%20Subject2%29.CNhs13381.12798-136F8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12798-136F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr30minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_tpm_fwd Tc:MdmToLps_00hr30minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_forward 1 891 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor2%20%28t3%20Subject2%29.CNhs13381.12798-136F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12798-136F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr30minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHuvecRxlchPcr1xRawRep1 HUVEC RvXL PCR1 1 bigWig 0.279927 170.895004 HUVEC Control PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 892 224 75 0 239 165 127 0 0 0 regulation 0 color 224,75,0\ longLabel HUVEC Control PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HUVEC RvXL PCR1 1\ subGroups view=RawSignal factor=zRXLCH cellType=t2HUVEC protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHuvecRxlchPcr1xRawRep1\ type bigWig 0.279927 170.895004\ encTfChipPkENCFF651PWG MCF-7 NRF1 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in MCF-7 from ENCODE 3 (ENCFF651PWG) 1 892 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NRF1 in MCF-7 from ENCODE 3 (ENCFF651PWG)\ parent encTfChipPk off\ shortLabel MCF-7 NRF1\ subGroups cellType=MCF-7 factor=NRF1\ track encTfChipPkENCFF651PWG\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_ctss_rev Tc:MdmToLps_00hr30minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_reverse 0 892 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor2%20%28t3%20Subject2%29.CNhs13381.12798-136F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12798-136F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr30minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_tpm_rev Tc:MdmToLps_00hr30minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_reverse 1 892 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor2%20%28t3%20Subject2%29.CNhs13381.12798-136F8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12798-136F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr30minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Cebpbsc150V0422111PkRep1 MCF-7 CEBPB V11 1 broadPeak MCF-7 CEBPB v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 893 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 CEBPB v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 CEBPB V11 1\ subGroups view=Peaks factor=CEBPB cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7Cebpbsc150V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF282SXB MCF-7 PAX8 narrowPeak Transcription Factor ChIP-seq Peaks of PAX8 in MCF-7 from ENCODE 3 (ENCFF282SXB) 1 893 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of PAX8 in MCF-7 from ENCODE 3 (ENCFF282SXB)\ parent encTfChipPk off\ shortLabel MCF-7 PAX8\ subGroups cellType=MCF-7 factor=PAX8\ track encTfChipPkENCFF282SXB\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_ctss_fwd Tc:MdmToLps_00hr30minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_forward 0 893 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor3%20%28t3%20Subject3%29.CNhs13176.12896-137H7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12896-137H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr30minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_tpm_fwd Tc:MdmToLps_00hr30minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_forward 1 893 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor3%20%28t3%20Subject3%29.CNhs13176.12896-137H7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12896-137H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr30minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Cebpbsc150V0422111RawRep1 MCF-7 CEBPB V11 1 bigWig 1.000000 4519.000000 MCF-7 CEBPB v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 894 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 CEBPB v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 CEBPB V11 1\ subGroups view=RawSignal factor=CEBPB cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7Cebpbsc150V0422111RawRep1\ type bigWig 1.000000 4519.000000\ encTfChipPkENCFF922GXT MCF-7 PKNOX1 narrowPeak Transcription Factor ChIP-seq Peaks of PKNOX1 in MCF-7 from ENCODE 3 (ENCFF922GXT) 1 894 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of PKNOX1 in MCF-7 from ENCODE 3 (ENCFF922GXT)\ parent encTfChipPk off\ shortLabel MCF-7 PKNOX1\ subGroups cellType=MCF-7 factor=PKNOX1\ track encTfChipPkENCFF922GXT\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_ctss_rev Tc:MdmToLps_00hr30minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_reverse 0 894 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor3%20%28t3%20Subject3%29.CNhs13176.12896-137H7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12896-137H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr30minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_tpm_rev Tc:MdmToLps_00hr30minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_reverse 1 894 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor3%20%28t3%20Subject3%29.CNhs13176.12896-137H7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12896-137H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr30minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Cebpbsc150V0422111PkRep2 MCF-7 CEBPB V11 2 broadPeak MCF-7 CEBPB v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 895 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 CEBPB v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 CEBPB V11 2\ subGroups view=Peaks factor=CEBPB cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7Cebpbsc150V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF883LPV MCF-7 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in MCF-7 from ENCODE 3 (ENCFF883LPV) 1 895 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in MCF-7 from ENCODE 3 (ENCFF883LPV)\ parent encTfChipPk off\ shortLabel MCF-7 POLR2A\ subGroups cellType=MCF-7 factor=POLR2A\ track encTfChipPkENCFF883LPV\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_ctss_fwd Tc:MdmToLps_00hr45minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_forward 0 895 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor2%20%28t4%20Subject2%29.CNhs13382.12799-136F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12799-136F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr45minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_tpm_fwd Tc:MdmToLps_00hr45minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_forward 1 895 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor2%20%28t4%20Subject2%29.CNhs13382.12799-136F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12799-136F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr45minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Cebpbsc150V0422111RawRep2 MCF-7 CEBPB V11 2 bigWig 1.000000 1832.000000 MCF-7 CEBPB v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 896 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 CEBPB v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 CEBPB V11 2\ subGroups view=RawSignal factor=CEBPB cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7Cebpbsc150V0422111RawRep2\ type bigWig 1.000000 1832.000000\ encTfChipPkENCFF500ZLG MCF-7 RAD51 narrowPeak Transcription Factor ChIP-seq Peaks of RAD51 in MCF-7 from ENCODE 3 (ENCFF500ZLG) 1 896 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD51 in MCF-7 from ENCODE 3 (ENCFF500ZLG)\ parent encTfChipPk off\ shortLabel MCF-7 RAD51\ subGroups cellType=MCF-7 factor=RAD51\ track encTfChipPkENCFF500ZLG\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_ctss_rev Tc:MdmToLps_00hr45minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_reverse 0 896 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor2%20%28t4%20Subject2%29.CNhs13382.12799-136F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12799-136F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr45minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_tpm_rev Tc:MdmToLps_00hr45minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_reverse 1 896 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor2%20%28t4%20Subject2%29.CNhs13382.12799-136F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12799-136F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr45minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7CtcfcV0422111PkRep1 MCF-7 CTCF V11 1 broadPeak MCF-7 CTCF 5916 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 897 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 CTCF 5916 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 CTCF V11 1\ subGroups view=Peaks factor=CTCFSC5916 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7CtcfcV0422111PkRep1\ type broadPeak\ encTfChipPkENCFF065UFF MCF-7 RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in MCF-7 from ENCODE 3 (ENCFF065UFF) 1 897 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in MCF-7 from ENCODE 3 (ENCFF065UFF)\ parent encTfChipPk off\ shortLabel MCF-7 RCOR1\ subGroups cellType=MCF-7 factor=RCOR1\ track encTfChipPkENCFF065UFF\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_ctss_fwd Tc:MdmToLps_00hr45minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_forward 0 897 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor3%20%28t4%20Subject3%29.CNhs13177.12897-137H8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12897-137H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr45minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track 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category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7CtcfcV0422111RawRep1 MCF-7 CTCF V11 1 bigWig 1.000000 5995.000000 MCF-7 CTCF 5916 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 898 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 CTCF 5916 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 CTCF V11 1\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7CtcfcV0422111RawRep1\ type bigWig 1.000000 5995.000000\ encTfChipPkENCFF015PGM MCF-7 RFX1 1 narrowPeak Transcription Factor ChIP-seq Peaks of RFX1 in MCF-7 from ENCODE 3 (ENCFF015PGM) 1 898 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RFX1 in MCF-7 from ENCODE 3 (ENCFF015PGM)\ parent encTfChipPk off\ shortLabel MCF-7 RFX1 1\ subGroups cellType=MCF-7 factor=RFX1\ track encTfChipPkENCFF015PGM\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_ctss_rev Tc:MdmToLps_00hr45minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_reverse 0 898 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor3%20%28t4%20Subject3%29.CNhs13177.12897-137H8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12897-137H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr45minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_tpm_rev Tc:MdmToLps_00hr45minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_reverse 1 898 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor3%20%28t4%20Subject3%29.CNhs13177.12897-137H8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12897-137H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr45minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7CtcfcV0422111PkRep2 MCF-7 CTCF V11 2 broadPeak MCF-7 CTCF 5916 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 899 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 CTCF 5916 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 CTCF V11 2\ subGroups view=Peaks factor=CTCFSC5916 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7CtcfcV0422111PkRep2\ type broadPeak\ encTfChipPkENCFF150TBK MCF-7 RFX1 2 narrowPeak Transcription Factor ChIP-seq Peaks of RFX1 in MCF-7 from ENCODE 3 (ENCFF150TBK) 1 899 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RFX1 in MCF-7 from ENCODE 3 (ENCFF150TBK)\ parent encTfChipPk off\ shortLabel MCF-7 RFX1 2\ subGroups cellType=MCF-7 factor=RFX1\ track encTfChipPkENCFF150TBK\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_ctss_fwd Tc:MdmToLps_01hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_forward 0 899 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor2%20%28t5%20Subject2%29.CNhs13383.12800-136G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12800-136G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_tpm_fwd Tc:MdmToLps_01hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_forward 1 899 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor2%20%28t5%20Subject2%29.CNhs13383.12800-136G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12800-136G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7CtcfcV0422111RawRep2 MCF-7 CTCF V11 2 bigWig 1.000000 4514.000000 MCF-7 CTCF 5916 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 900 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 CTCF 5916 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 CTCF V11 2\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7CtcfcV0422111RawRep2\ type bigWig 1.000000 4514.000000\ encTfChipPkENCFF949QZO MCF-7 RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in MCF-7 from ENCODE 3 (ENCFF949QZO) 1 900 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RFX5 in MCF-7 from ENCODE 3 (ENCFF949QZO)\ parent encTfChipPk off\ shortLabel MCF-7 RFX5\ subGroups cellType=MCF-7 factor=RFX5\ track encTfChipPkENCFF949QZO\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_ctss_rev Tc:MdmToLps_01hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_reverse 0 900 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor2%20%28t5%20Subject2%29.CNhs13383.12800-136G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12800-136G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_tpm_rev Tc:MdmToLps_01hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_reverse 1 900 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor2%20%28t5%20Subject2%29.CNhs13383.12800-136G1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12800-136G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Egr1V0422111PkRep1 MCF-7 Egr-1 V11 1 broadPeak MCF-7 Egr-1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 901 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 Egr-1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 Egr-1 V11 1\ subGroups view=Peaks factor=EGR1 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7Egr1V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF580NQL MCF-7 SIN3A narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in MCF-7 from ENCODE 3 (ENCFF580NQL) 1 901 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SIN3A in MCF-7 from ENCODE 3 (ENCFF580NQL)\ parent encTfChipPk off\ shortLabel MCF-7 SIN3A\ subGroups cellType=MCF-7 factor=SIN3A\ track encTfChipPkENCFF580NQL\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_ctss_fwd Tc:MdmToLps_01hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_forward 0 901 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor3%20%28t5%20Subject3%29.CNhs13178.12898-137H9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12898-137H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_tpm_fwd Tc:MdmToLps_01hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_forward 1 901 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor3%20%28t5%20Subject3%29.CNhs13178.12898-137H9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12898-137H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Egr1V0422111RawRep1 MCF-7 Egr-1 V11 1 bigWig 1.000000 3286.000000 MCF-7 Egr-1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 902 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Egr-1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 Egr-1 V11 1\ subGroups view=RawSignal factor=EGR1 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7Egr1V0422111RawRep1\ type bigWig 1.000000 3286.000000\ encTfChipPkENCFF278ODX MCF-7 SIX4 narrowPeak Transcription Factor ChIP-seq Peaks of SIX4 in MCF-7 from ENCODE 3 (ENCFF278ODX) 1 902 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SIX4 in MCF-7 from ENCODE 3 (ENCFF278ODX)\ parent encTfChipPk off\ shortLabel MCF-7 SIX4\ subGroups cellType=MCF-7 factor=SIX4\ track encTfChipPkENCFF278ODX\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_ctss_rev Tc:MdmToLps_01hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_reverse 0 902 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor3%20%28t5%20Subject3%29.CNhs13178.12898-137H9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12898-137H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_tpm_rev Tc:MdmToLps_01hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_reverse 1 902 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor3%20%28t5%20Subject3%29.CNhs13178.12898-137H9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12898-137H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Egr1V0422111PkRep2 MCF-7 Egr-1 V11 2 broadPeak MCF-7 Egr-1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 903 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 Egr-1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 Egr-1 V11 2\ subGroups view=Peaks factor=EGR1 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7Egr1V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF351NCM MCF-7 SMARCA5 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA5 in MCF-7 from ENCODE 3 (ENCFF351NCM) 1 903 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SMARCA5 in MCF-7 from ENCODE 3 (ENCFF351NCM)\ parent encTfChipPk off\ shortLabel MCF-7 SMARCA5\ subGroups cellType=MCF-7 factor=SMARCA5\ track encTfChipPkENCFF351NCM\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_ctss_fwd Tc:MdmToLps_01hr20minD2+ bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_forward 0 903 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor2%20%28t6%20Subject2%29.CNhs13384.12801-136G2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12801-136G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr20minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_tpm_fwd Tc:MdmToLps_01hr20minD2+ bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_forward 1 903 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor2%20%28t6%20Subject2%29.CNhs13384.12801-136G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12801-136G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr20minD2+\ subGroups sequenceTech=hCAGE 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from ENCODE 3 (ENCFF096LRM)\ parent encTfChipPk off\ shortLabel MCF-7 SMARCE1\ subGroups cellType=MCF-7 factor=SMARCE1\ track encTfChipPkENCFF096LRM\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_ctss_rev Tc:MdmToLps_01hr20minD2- bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_reverse 0 904 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor2%20%28t6%20Subject2%29.CNhs13384.12801-136G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12801-136G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr20minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS 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ENCODE 3 (ENCFF870CER)\ parent encTfChipPk off\ shortLabel MCF-7 SREBF1\ subGroups cellType=MCF-7 factor=SREBF1\ track encTfChipPkENCFF870CER\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_ctss_rev Tc:MdmToLps_01hr20minD3- bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_reverse 0 906 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor3%20%28t6%20Subject3%29.CNhs13179.12899-137I1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12899-137I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr20minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_tpm_rev Tc:MdmToLps_01hr20minD3- bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_reverse 1 906 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor3%20%28t6%20Subject3%29.CNhs13179.12899-137I1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12899-137I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr20minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Elf1V0422111PkRep2 MCF-7 ELF1 V11 2 broadPeak MCF-7 ELF1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 907 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 ELF1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 ELF1 V11 2\ subGroups view=Peaks factor=ELF1SC631 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7Elf1V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF956LMS MCF-7 SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in MCF-7 from ENCODE 3 (ENCFF956LMS) 1 907 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in MCF-7 from ENCODE 3 (ENCFF956LMS)\ parent encTfChipPk off\ shortLabel MCF-7 SUZ12\ subGroups cellType=MCF-7 factor=SUZ12\ track encTfChipPkENCFF956LMS\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_ctss_fwd Tc:MdmToLps_02hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_forward 0 907 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor2%20%28t8%20Subject2%29.CNhs13386.12803-136G4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12803-136G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_tpm_fwd Tc:MdmToLps_02hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_forward 1 907 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor2%20%28t8%20Subject2%29.CNhs13386.12803-136G4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12803-136G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Elf1V0422111RawRep2 MCF-7 ELF1 V11 2 bigWig 1.000000 1968.000000 MCF-7 ELF1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 908 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 ELF1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 ELF1 V11 2\ subGroups view=RawSignal factor=ELF1SC631 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7Elf1V0422111RawRep2\ type bigWig 1.000000 1968.000000\ encTfChipPkENCFF757QEJ MCF-7 TRIM22 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM22 in MCF-7 from ENCODE 3 (ENCFF757QEJ) 1 908 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TRIM22 in MCF-7 from ENCODE 3 (ENCFF757QEJ)\ parent encTfChipPk off\ shortLabel MCF-7 TRIM22\ subGroups cellType=MCF-7 factor=TRIM22\ track encTfChipPkENCFF757QEJ\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_ctss_rev Tc:MdmToLps_02hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_reverse 0 908 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor2%20%28t8%20Subject2%29.CNhs13386.12803-136G4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12803-136G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_tpm_rev Tc:MdmToLps_02hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_reverse 1 908 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor2%20%28t8%20Subject2%29.CNhs13386.12803-136G4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12803-136G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Fosl2V0422111PkRep1 MCF-7 FOSL2 V11 1 broadPeak MCF-7 FOSL2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 909 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 FOSL2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 FOSL2 V11 1\ subGroups view=Peaks factor=FOSL2 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7Fosl2V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF603AWL MCF-7 ZBTB1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB1 in MCF-7 from ENCODE 3 (ENCFF603AWL) 1 909 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZBTB1 in MCF-7 from ENCODE 3 (ENCFF603AWL)\ parent encTfChipPk off\ shortLabel MCF-7 ZBTB1\ subGroups cellType=MCF-7 factor=ZBTB1\ track encTfChipPkENCFF603AWL\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_ctss_fwd Tc:MdmToLps_02hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_forward 0 909 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor3%20%28t8%20Subject3%29.CNhs13181.12901-137I3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12901-137I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_tpm_fwd Tc:MdmToLps_02hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_forward 1 909 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor3%20%28t8%20Subject3%29.CNhs13181.12901-137I3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12901-137I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Fosl2V0422111RawRep1 MCF-7 FOSL2 V11 1 bigWig 1.000000 2374.000000 MCF-7 FOSL2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 910 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 FOSL2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 FOSL2 V11 1\ subGroups view=RawSignal factor=FOSL2 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7Fosl2V0422111RawRep1\ type bigWig 1.000000 2374.000000\ encTfChipPkENCFF126PJF MCF-7 ZBTB11 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB11 in MCF-7 from ENCODE 3 (ENCFF126PJF) 1 910 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZBTB11 in MCF-7 from ENCODE 3 (ENCFF126PJF)\ parent encTfChipPk off\ shortLabel MCF-7 ZBTB11\ subGroups cellType=MCF-7 factor=ZBTB11\ track encTfChipPkENCFF126PJF\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_ctss_rev Tc:MdmToLps_02hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_reverse 0 910 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor3%20%28t8%20Subject3%29.CNhs13181.12901-137I3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12901-137I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_tpm_rev Tc:MdmToLps_02hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_reverse 1 910 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor3%20%28t8%20Subject3%29.CNhs13181.12901-137I3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12901-137I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Fosl2V0422111PkRep2 MCF-7 FOSL2 V11 2 broadPeak MCF-7 FOSL2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 911 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 FOSL2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 FOSL2 V11 2\ subGroups view=Peaks factor=FOSL2 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7Fosl2V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF447FPV MCF-7 ZBTB33 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in MCF-7 from ENCODE 3 (ENCFF447FPV) 1 911 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in MCF-7 from ENCODE 3 (ENCFF447FPV)\ parent encTfChipPk off\ shortLabel MCF-7 ZBTB33\ subGroups cellType=MCF-7 factor=ZBTB33\ track encTfChipPkENCFF447FPV\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_ctss_fwd Tc:MdmToLps_02hr30minD1+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_forward 0 911 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor1%20%28t9%20Subject1%29.CNhs13152.12706-135E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12706-135E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr30minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_tpm_fwd Tc:MdmToLps_02hr30minD1+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_forward 1 911 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor1%20%28t9%20Subject1%29.CNhs13152.12706-135E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12706-135E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr30minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Fosl2V0422111RawRep2 MCF-7 FOSL2 V11 2 bigWig 1.000000 1983.000000 MCF-7 FOSL2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 912 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 FOSL2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 FOSL2 V11 2\ subGroups view=RawSignal factor=FOSL2 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7Fosl2V0422111RawRep2\ type bigWig 1.000000 1983.000000\ encTfChipPkENCFF397XTF MCF-7 ZBTB40 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB40 in MCF-7 from ENCODE 3 (ENCFF397XTF) 1 912 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZBTB40 in MCF-7 from ENCODE 3 (ENCFF397XTF)\ parent encTfChipPk off\ shortLabel MCF-7 ZBTB40\ subGroups cellType=MCF-7 factor=ZBTB40\ track encTfChipPkENCFF397XTF\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_ctss_rev Tc:MdmToLps_02hr30minD1- bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_reverse 0 912 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor1%20%28t9%20Subject1%29.CNhs13152.12706-135E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12706-135E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr30minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_tpm_rev Tc:MdmToLps_02hr30minD1- bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_reverse 1 912 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor1%20%28t9%20Subject1%29.CNhs13152.12706-135E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12706-135E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr30minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Foxm1sc502V0422111PkRep1 MCF-7 FOXM1 V11 1 broadPeak MCF-7 FOXM1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 913 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 FOXM1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 FOXM1 V11 1\ subGroups view=Peaks factor=FOXM1SC502 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7Foxm1sc502V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF070WUF MCF-7 ZBTB7B narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB7B in MCF-7 from ENCODE 3 (ENCFF070WUF) 1 913 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZBTB7B in MCF-7 from ENCODE 3 (ENCFF070WUF)\ parent encTfChipPk off\ shortLabel MCF-7 ZBTB7B\ subGroups cellType=MCF-7 factor=ZBTB7B\ track encTfChipPkENCFF070WUF\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_ctss_fwd Tc:MdmToLps_02hr30minD2+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_forward 0 913 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor2%20%28t9%20Subject2%29.CNhs13387.12804-136G5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12804-136G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr30minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_tpm_fwd Tc:MdmToLps_02hr30minD2+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_forward 1 913 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor2%20%28t9%20Subject2%29.CNhs13387.12804-136G5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12804-136G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr30minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Foxm1sc502V0422111RawRep1 MCF-7 FOXM1 V11 1 bigWig 1.000000 4232.000000 MCF-7 FOXM1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 914 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 FOXM1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 FOXM1 V11 1\ subGroups view=RawSignal factor=FOXM1SC502 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7Foxm1sc502V0422111RawRep1\ type bigWig 1.000000 4232.000000\ encTfChipPkENCFF146HGZ MCF-7 ZFX narrowPeak Transcription Factor ChIP-seq Peaks of ZFX in MCF-7 from ENCODE 3 (ENCFF146HGZ) 1 914 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZFX in MCF-7 from ENCODE 3 (ENCFF146HGZ)\ parent encTfChipPk off\ shortLabel MCF-7 ZFX\ subGroups cellType=MCF-7 factor=ZFX\ track encTfChipPkENCFF146HGZ\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_ctss_rev Tc:MdmToLps_02hr30minD2- bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_reverse 0 914 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor2%20%28t9%20Subject2%29.CNhs13387.12804-136G5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12804-136G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr30minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_tpm_rev Tc:MdmToLps_02hr30minD2- bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_reverse 1 914 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor2%20%28t9%20Subject2%29.CNhs13387.12804-136G5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12804-136G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr30minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Foxm1sc502V0422111PkRep2 MCF-7 FOXM1 V11 2 broadPeak MCF-7 FOXM1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 915 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 FOXM1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 FOXM1 V11 2\ subGroups view=Peaks factor=FOXM1SC502 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7Foxm1sc502V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF235RIU MCF-7 ZHX2 narrowPeak Transcription Factor ChIP-seq Peaks of ZHX2 in MCF-7 from ENCODE 3 (ENCFF235RIU) 1 915 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZHX2 in MCF-7 from ENCODE 3 (ENCFF235RIU)\ parent encTfChipPk off\ shortLabel MCF-7 ZHX2\ subGroups cellType=MCF-7 factor=ZHX2\ track encTfChipPkENCFF235RIU\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_ctss_fwd Tc:MdmToLps_02hr30minD3+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_forward 0 915 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor3%20%28t9%20Subject3%29.CNhs13182.12902-137I4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12902-137I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr30minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_tpm_fwd Tc:MdmToLps_02hr30minD3+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_forward 1 915 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor3%20%28t9%20Subject3%29.CNhs13182.12902-137I4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12902-137I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr30minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Foxm1sc502V0422111RawRep2 MCF-7 FOXM1 V11 2 bigWig 1.000000 1800.000000 MCF-7 FOXM1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 916 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 FOXM1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 FOXM1 V11 2\ subGroups view=RawSignal factor=FOXM1SC502 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7Foxm1sc502V0422111RawRep2\ type bigWig 1.000000 1800.000000\ encTfChipPkENCFF353QLW MCF-7 ZKSCAN1 narrowPeak Transcription Factor ChIP-seq Peaks of ZKSCAN1 in MCF-7 from ENCODE 3 (ENCFF353QLW) 1 916 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of 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Tc:MdmToLps_02hr30minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7GabpV0422111PkRep1 MCF-7 GABP V11 1 broadPeak MCF-7 GABP v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 917 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 GABP v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 GABP V11 1\ subGroups view=Peaks factor=GABP cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7GabpV0422111PkRep1\ type broadPeak\ encTfChipPkENCFF051JAE MCF-7 ZNF207 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF207 in MCF-7 from ENCODE 3 (ENCFF051JAE) 1 917 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF207 in MCF-7 from ENCODE 3 (ENCFF051JAE)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF207\ subGroups cellType=MCF-7 factor=ZNF207\ track encTfChipPkENCFF051JAE\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_ctss_fwd Tc:MdmToLps_03hr00minD1+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_forward 0 917 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor1%20%28t10%20Subject1%29.CNhs12924.12707-135E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12707-135E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_tpm_fwd Tc:MdmToLps_03hr00minD1+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_forward 1 917 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor1%20%28t10%20Subject1%29.CNhs12924.12707-135E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12707-135E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7GabpV0422111RawRep1 MCF-7 GABP V11 1 bigWig 1.000000 7060.000000 MCF-7 GABP v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 918 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 GABP v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 GABP V11 1\ subGroups view=RawSignal factor=GABP cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7GabpV0422111RawRep1\ type bigWig 1.000000 7060.000000\ encTfChipPkENCFF178LCE MCF-7 ZNF217 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF217 in MCF-7 from ENCODE 3 (ENCFF178LCE) 1 918 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF217 in MCF-7 from ENCODE 3 (ENCFF178LCE)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF217 1\ subGroups cellType=MCF-7 factor=ZNF217\ track encTfChipPkENCFF178LCE\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_ctss_rev Tc:MdmToLps_03hr00minD1- bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_reverse 0 918 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor1%20%28t10%20Subject1%29.CNhs12924.12707-135E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12707-135E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_tpm_rev Tc:MdmToLps_03hr00minD1- bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_reverse 1 918 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor1%20%28t10%20Subject1%29.CNhs12924.12707-135E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12707-135E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7GabpV0422111PkRep2 MCF-7 GABP V11 2 broadPeak MCF-7 GABP v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 919 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 GABP v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 GABP V11 2\ subGroups view=Peaks factor=GABP cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7GabpV0422111PkRep2\ type broadPeak\ encTfChipPkENCFF567MGV MCF-7 ZNF217 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF217 in MCF-7 from ENCODE 3 (ENCFF567MGV) 1 919 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF217 in MCF-7 from ENCODE 3 (ENCFF567MGV)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF217 2\ subGroups cellType=MCF-7 factor=ZNF217\ track encTfChipPkENCFF567MGV\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_ctss_fwd Tc:MdmToLps_03hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_forward 0 919 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor2%20%28t10%20Subject2%29.CNhs13388.12805-136G6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12805-136G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_tpm_fwd Tc:MdmToLps_03hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_forward 1 919 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor2%20%28t10%20Subject2%29.CNhs13388.12805-136G6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12805-136G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7GabpV0422111RawRep2 MCF-7 GABP V11 2 bigWig 1.000000 3623.000000 MCF-7 GABP v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 920 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 GABP v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 GABP V11 2\ subGroups view=RawSignal factor=GABP cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7GabpV0422111RawRep2\ type bigWig 1.000000 3623.000000\ encTfChipPkENCFF961BQJ MCF-7 ZNF24 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in MCF-7 from ENCODE 3 (ENCFF961BQJ) 1 920 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in MCF-7 from ENCODE 3 (ENCFF961BQJ)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF24\ subGroups cellType=MCF-7 factor=ZNF24\ track encTfChipPkENCFF961BQJ\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_ctss_rev Tc:MdmToLps_03hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_reverse 0 920 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor2%20%28t10%20Subject2%29.CNhs13388.12805-136G6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12805-136G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_tpm_rev Tc:MdmToLps_03hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_reverse 1 920 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor2%20%28t10%20Subject2%29.CNhs13388.12805-136G6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12805-136G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Gata3V0422111PkRep1 MCF-7 GATA3 V11 1 broadPeak MCF-7 GATA3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 921 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 GATA3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 GATA3 V11 1\ subGroups view=Peaks factor=GATA3SC268 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7Gata3V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF563AEQ MCF-7 ZNF444 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF444 in MCF-7 from ENCODE 3 (ENCFF563AEQ) 1 921 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF444 in MCF-7 from ENCODE 3 (ENCFF563AEQ)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF444\ subGroups cellType=MCF-7 factor=ZNF444\ track encTfChipPkENCFF563AEQ\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_ctss_fwd Tc:MdmToLps_03hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_forward 0 921 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor3%20%28t10%20Subject3%29.CNhs13183.12903-137I5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12903-137I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_tpm_fwd Tc:MdmToLps_03hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_forward 1 921 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor3%20%28t10%20Subject3%29.CNhs13183.12903-137I5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12903-137I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Gata3V0422111RawRep1 MCF-7 GATA3 V11 1 bigWig 1.000000 3078.000000 MCF-7 GATA3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 922 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 GATA3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 GATA3 V11 1\ subGroups view=RawSignal factor=GATA3SC268 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7Gata3V0422111RawRep1\ type bigWig 1.000000 3078.000000\ encTfChipPkENCFF973DWU MCF-7 ZNF507 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF507 in MCF-7 from ENCODE 3 (ENCFF973DWU) 1 922 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF507 in MCF-7 from ENCODE 3 (ENCFF973DWU)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF507\ subGroups cellType=MCF-7 factor=ZNF507\ track encTfChipPkENCFF973DWU\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_ctss_rev Tc:MdmToLps_03hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_reverse 0 922 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor3%20%28t10%20Subject3%29.CNhs13183.12903-137I5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12903-137I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_tpm_rev Tc:MdmToLps_03hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_reverse 1 922 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor3%20%28t10%20Subject3%29.CNhs13183.12903-137I5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12903-137I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Gata3V0422111PkRep2 MCF-7 GATA3 V11 2 broadPeak MCF-7 GATA3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 923 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 GATA3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 GATA3 V11 2\ subGroups view=Peaks factor=GATA3SC268 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7Gata3V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF346OZB MCF-7 ZNF512B 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF512B in MCF-7 from ENCODE 3 (ENCFF346OZB) 1 923 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF512B in MCF-7 from ENCODE 3 (ENCFF346OZB)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF512B 1\ subGroups cellType=MCF-7 factor=ZNF512B\ track encTfChipPkENCFF346OZB\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor2T11Subject2_CNhs13389_ctss_fwd Tc:MdmToLps_03hr30minD2+ bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor2 (t11 Subject2)_CNhs13389_12806-136G7_forward 0 923 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12806-136G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor2%20%28t11%20Subject2%29.CNhs13389.12806-136G7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor2 (t11 Subject2)_CNhs13389_12806-136G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12806-136G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr30minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track 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category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor2T11Subject2_CNhs13389_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12806-136G7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Gata3V0422111RawRep2 MCF-7 GATA3 V11 2 bigWig 1.000000 1552.000000 MCF-7 GATA3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 924 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 GATA3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 GATA3 V11 2\ subGroups view=RawSignal factor=GATA3SC268 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7Gata3V0422111RawRep2\ type bigWig 1.000000 1552.000000\ encTfChipPkENCFF922QEI MCF-7 ZNF512B 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF512B in MCF-7 from ENCODE 3 (ENCFF922QEI) 1 924 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF512B in MCF-7 from ENCODE 3 (ENCFF922QEI)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF512B 2\ subGroups cellType=MCF-7 factor=ZNF512B\ track encTfChipPkENCFF922QEI\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor2T11Subject2_CNhs13389_ctss_rev Tc:MdmToLps_03hr30minD2- bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor2 (t11 Subject2)_CNhs13389_12806-136G7_reverse 0 924 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12806-136G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor2%20%28t11%20Subject2%29.CNhs13389.12806-136G7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor2 (t11 Subject2)_CNhs13389_12806-136G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12806-136G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr30minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor2T11Subject2_CNhs13389_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12806-136G7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor2T11Subject2_CNhs13389_tpm_rev Tc:MdmToLps_03hr30minD2- bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor2 (t11 Subject2)_CNhs13389_12806-136G7_reverse 1 924 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12806-136G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor2%20%28t11%20Subject2%29.CNhs13389.12806-136G7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor2 (t11 Subject2)_CNhs13389_12806-136G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12806-136G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr30minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor2T11Subject2_CNhs13389_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12806-136G7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Hdac2sc6296V0422111PkRep1 MCF-7 HDAC2 V11 1 broadPeak MCF-7 HDAC2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 925 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 HDAC2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 HDAC2 V11 1\ subGroups view=Peaks factor=HDAC2SC6296 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7Hdac2sc6296V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF603ZTG MCF-7 ZNF574 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF574 in MCF-7 from ENCODE 3 (ENCFF603ZTG) 1 925 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF574 in MCF-7 from ENCODE 3 (ENCFF603ZTG)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF574\ subGroups cellType=MCF-7 factor=ZNF574\ track encTfChipPkENCFF603ZTG\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor3T11Subject3_CNhs13184_ctss_fwd Tc:MdmToLps_03hr30minD3+ bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor3 (t11 Subject3)_CNhs13184_12904-137I6_forward 0 925 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12904-137I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor3%20%28t11%20Subject3%29.CNhs13184.12904-137I6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor3 (t11 Subject3)_CNhs13184_12904-137I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12904-137I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr30minD3+\ subGroups sequenceTech=hCAGE 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Tc:MdmToLps_03hr30minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor3T11Subject3_CNhs13184_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12904-137I6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Hdac2sc6296V0422111RawRep1 MCF-7 HDAC2 V11 1 bigWig 1.000000 2787.000000 MCF-7 HDAC2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 926 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 HDAC2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 HDAC2 V11 1\ subGroups view=RawSignal factor=HDAC2SC6296 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7Hdac2sc6296V0422111RawRep1\ type bigWig 1.000000 2787.000000\ encTfChipPkENCFF854CXA MCF-7 ZNF579 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF579 in MCF-7 from ENCODE 3 (ENCFF854CXA) 1 926 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF579 in MCF-7 from ENCODE 3 (ENCFF854CXA)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF579\ subGroups cellType=MCF-7 factor=ZNF579\ track encTfChipPkENCFF854CXA\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor3T11Subject3_CNhs13184_ctss_rev Tc:MdmToLps_03hr30minD3- bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor3 (t11 Subject3)_CNhs13184_12904-137I6_reverse 0 926 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12904-137I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor3%20%28t11%20Subject3%29.CNhs13184.12904-137I6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor3 (t11 Subject3)_CNhs13184_12904-137I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12904-137I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr30minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor3T11Subject3_CNhs13184_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12904-137I6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor3T11Subject3_CNhs13184_tpm_rev Tc:MdmToLps_03hr30minD3- bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor3 (t11 Subject3)_CNhs13184_12904-137I6_reverse 1 926 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12904-137I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor3%20%28t11%20Subject3%29.CNhs13184.12904-137I6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor3 (t11 Subject3)_CNhs13184_12904-137I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12904-137I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr30minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor3T11Subject3_CNhs13184_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12904-137I6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Hdac2sc6296V0422111PkRep2 MCF-7 HDAC2 V11 2 broadPeak MCF-7 HDAC2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 927 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 HDAC2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 HDAC2 V11 2\ subGroups view=Peaks factor=HDAC2SC6296 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7Hdac2sc6296V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF162RSN MCF-7 ZNF592 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF592 in MCF-7 from ENCODE 3 (ENCFF162RSN) 1 927 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF592 in MCF-7 from ENCODE 3 (ENCFF162RSN)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF592 1\ subGroups cellType=MCF-7 factor=ZNF592\ track encTfChipPkENCFF162RSN\ MonocytederivedMacrophagesResponseToLPS04hrDonor2T12Subject2_CNhs13391_ctss_fwd Tc:MdmToLps_04hrD2+ bigWig Monocyte-derived macrophages response to LPS, 04hr, donor2 (t12 Subject2)_CNhs13391_12807-136G8_forward 0 927 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12807-136G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor2%20%28t12%20Subject2%29.CNhs13391.12807-136G8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor2 (t12 Subject2)_CNhs13391_12807-136G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12807-136G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_04hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS04hrDonor2T12Subject2_CNhs13391_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12807-136G8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS04hrDonor2T12Subject2_CNhs13391_tpm_fwd Tc:MdmToLps_04hrD2+ bigWig Monocyte-derived macrophages response to LPS, 04hr, donor2 (t12 Subject2)_CNhs13391_12807-136G8_forward 1 927 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12807-136G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor2%20%28t12%20Subject2%29.CNhs13391.12807-136G8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor2 (t12 Subject2)_CNhs13391_12807-136G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12807-136G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_04hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS04hrDonor2T12Subject2_CNhs13391_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12807-136G8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Hdac2sc6296V0422111RawRep2 MCF-7 HDAC2 V11 2 bigWig 1.000000 2300.000000 MCF-7 HDAC2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 928 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 HDAC2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 HDAC2 V11 2\ subGroups view=RawSignal factor=HDAC2SC6296 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7Hdac2sc6296V0422111RawRep2\ type bigWig 1.000000 2300.000000\ encTfChipPkENCFF615FIR MCF-7 ZNF592 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF592 in MCF-7 from ENCODE 3 (ENCFF615FIR) 1 928 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF592 in MCF-7 from ENCODE 3 (ENCFF615FIR)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF592 2\ subGroups cellType=MCF-7 factor=ZNF592\ track encTfChipPkENCFF615FIR\ MonocytederivedMacrophagesResponseToLPS04hrDonor2T12Subject2_CNhs13391_ctss_rev Tc:MdmToLps_04hrD2- bigWig Monocyte-derived macrophages response to LPS, 04hr, donor2 (t12 Subject2)_CNhs13391_12807-136G8_reverse 0 928 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12807-136G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor2%20%28t12%20Subject2%29.CNhs13391.12807-136G8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor2 (t12 Subject2)_CNhs13391_12807-136G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12807-136G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_04hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS04hrDonor2T12Subject2_CNhs13391_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12807-136G8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS04hrDonor2T12Subject2_CNhs13391_tpm_rev Tc:MdmToLps_04hrD2- bigWig Monocyte-derived macrophages response to LPS, 04hr, donor2 (t12 Subject2)_CNhs13391_12807-136G8_reverse 1 928 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12807-136G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor2%20%28t12%20Subject2%29.CNhs13391.12807-136G8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor2 (t12 Subject2)_CNhs13391_12807-136G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12807-136G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_04hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS04hrDonor2T12Subject2_CNhs13391_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12807-136G8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7JundV0422111PkRep1 MCF-7 JunD V11 1 broadPeak MCF-7 JunD v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 929 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 JunD v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 JunD V11 1\ subGroups view=Peaks factor=JUND cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7JundV0422111PkRep1\ type broadPeak\ encTfChipPkENCFF955YVT MCF-7 ZNF687 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF687 in MCF-7 from ENCODE 3 (ENCFF955YVT) 1 929 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF687 in MCF-7 from ENCODE 3 (ENCFF955YVT)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF687\ subGroups cellType=MCF-7 factor=ZNF687\ track encTfChipPkENCFF955YVT\ MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_ctss_fwd Tc:MdmToLps_04hrD3+ bigWig Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_forward 0 929 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor3%20%28t12%20Subject3%29.CNhs13185.12905-137I7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12905-137I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_04hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_tpm_fwd Tc:MdmToLps_04hrD3+ bigWig Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_forward 1 929 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor3%20%28t12%20Subject3%29.CNhs13185.12905-137I7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12905-137I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_04hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7JundV0422111RawRep1 MCF-7 JunD V11 1 bigWig 1.000000 2335.000000 MCF-7 JunD v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 930 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 JunD v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 JunD V11 1\ subGroups view=RawSignal factor=JUND cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7JundV0422111RawRep1\ type bigWig 1.000000 2335.000000\ encTfChipPkENCFF806GXB MCF-7 ZNF8 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF8 in MCF-7 from ENCODE 3 (ENCFF806GXB) 1 930 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF8 in MCF-7 from ENCODE 3 (ENCFF806GXB)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF8\ subGroups cellType=MCF-7 factor=ZNF8\ track encTfChipPkENCFF806GXB\ MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_ctss_rev Tc:MdmToLps_04hrD3- bigWig Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_reverse 0 930 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor3%20%28t12%20Subject3%29.CNhs13185.12905-137I7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12905-137I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_04hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_tpm_rev Tc:MdmToLps_04hrD3- bigWig Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_reverse 1 930 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor3%20%28t12%20Subject3%29.CNhs13185.12905-137I7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12905-137I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_04hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7JundV0422111PkRep2 MCF-7 JunD V11 2 broadPeak MCF-7 JunD v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 931 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 JunD v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 JunD V11 2\ subGroups view=Peaks factor=JUND cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7JundV0422111PkRep2\ type broadPeak\ encTfChipPkENCFF374FKH MCF_10A FOS 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOS in MCF_10A from ENCODE 3 (ENCFF374FKH) 1 931 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOS in MCF_10A from ENCODE 3 (ENCFF374FKH)\ parent encTfChipPk off\ shortLabel MCF_10A FOS 1\ subGroups cellType=MCF_10A factor=FOS\ track encTfChipPkENCFF374FKH\ MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_ctss_fwd Tc:MdmToLps_05hrD1+ bigWig Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_forward 0 931 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor1%20%28t13%20Subject1%29.CNhs13155.12710-135F1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12710-135F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_05hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_tpm_fwd Tc:MdmToLps_05hrD1+ bigWig Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_forward 1 931 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor1%20%28t13%20Subject1%29.CNhs13155.12710-135F1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12710-135F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_05hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7JundV0422111RawRep2 MCF-7 JunD V11 2 bigWig 1.000000 2152.000000 MCF-7 JunD v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 932 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 JunD v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 JunD V11 2\ subGroups view=RawSignal factor=JUND cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7JundV0422111RawRep2\ type bigWig 1.000000 2152.000000\ encTfChipPkENCFF111IPG MCF_10A FOS 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOS in MCF_10A from ENCODE 3 (ENCFF111IPG) 1 932 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOS in MCF_10A from ENCODE 3 (ENCFF111IPG)\ parent encTfChipPk off\ shortLabel MCF_10A FOS 2\ subGroups cellType=MCF_10A factor=FOS\ track encTfChipPkENCFF111IPG\ MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_ctss_rev Tc:MdmToLps_05hrD1- bigWig Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_reverse 0 932 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor1%20%28t13%20Subject1%29.CNhs13155.12710-135F1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12710-135F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_05hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_tpm_rev Tc:MdmToLps_05hrD1- bigWig Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_reverse 1 932 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor1%20%28t13%20Subject1%29.CNhs13155.12710-135F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12710-135F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_05hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7MaxV0422111PkRep1 MCF-7 Max V11 1 broadPeak MCF-7 Max v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 933 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 Max v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 Max V11 1\ subGroups view=Peaks factor=MAX cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7MaxV0422111PkRep1\ type broadPeak\ encTfChipPkENCFF988HJD MCF_10A FOS 3 narrowPeak Transcription Factor ChIP-seq Peaks of FOS in MCF_10A from ENCODE 3 (ENCFF988HJD) 1 933 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOS in MCF_10A from ENCODE 3 (ENCFF988HJD)\ parent encTfChipPk off\ shortLabel MCF_10A FOS 3\ subGroups cellType=MCF_10A factor=FOS\ track encTfChipPkENCFF988HJD\ MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_ctss_fwd Tc:MdmToLps_05hrD2+ bigWig Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_forward 0 933 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor2%20%28t13%20Subject2%29.CNhs13392.12808-136G9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12808-136G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_05hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_tpm_fwd Tc:MdmToLps_05hrD2+ bigWig Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_forward 1 933 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor2%20%28t13%20Subject2%29.CNhs13392.12808-136G9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12808-136G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_05hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7MaxV0422111RawRep1 MCF-7 Max V11 1 bigWig 1.000000 2806.000000 MCF-7 Max v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 934 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Max v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 Max V11 1\ subGroups view=RawSignal factor=MAX cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7MaxV0422111RawRep1\ type bigWig 1.000000 2806.000000\ encTfChipPkENCFF772PCI MCF_10A MYC narrowPeak Transcription Factor ChIP-seq Peaks of MYC in MCF_10A from ENCODE 3 (ENCFF772PCI) 1 934 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MYC in MCF_10A from ENCODE 3 (ENCFF772PCI)\ parent encTfChipPk off\ shortLabel MCF_10A MYC\ subGroups cellType=MCF_10A factor=MYC\ track encTfChipPkENCFF772PCI\ MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_ctss_rev Tc:MdmToLps_05hrD2- bigWig Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_reverse 0 934 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor2%20%28t13%20Subject2%29.CNhs13392.12808-136G9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12808-136G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_05hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_tpm_rev Tc:MdmToLps_05hrD2- bigWig Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_reverse 1 934 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor2%20%28t13%20Subject2%29.CNhs13392.12808-136G9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12808-136G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_05hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7MaxV0422111PkRep2 MCF-7 Max V11 2 broadPeak MCF-7 Max v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 935 0 0 0 127 127 127 0 0 0 regulation 1 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shortLabel MCF-7 NRSF V11 1\ subGroups view=RawSignal factor=NRSF cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7NrsfV0422111RawRep1\ type bigWig 1.000000 24539.000000\ encTfChipPkENCFF924XFS NCI-H929 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in NCI-H929 from ENCODE 3 (ENCFF924XFS) 1 942 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in NCI-H929 from ENCODE 3 (ENCFF924XFS)\ parent encTfChipPk off\ shortLabel NCI-H929 CTCF\ subGroups cellType=NCI-H929 factor=CTCF\ track encTfChipPkENCFF924XFS\ MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_ctss_rev Tc:MdmToLps_08hrD3- bigWig Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_reverse 0 942 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor3%20%28t16%20Subject3%29.CNhs13326.12909-138A2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12909-138A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_08hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_tpm_rev Tc:MdmToLps_08hrD3- bigWig Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_reverse 1 942 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2 regulation 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V11 2\ subGroups view=Peaks factor=NRSF cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7NrsfV0422111PkRep2\ type broadPeak\ encTfChipPkENCFF102VYH NT2/D1 ZNF274 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF274 in NT2/D1 from ENCODE 3 (ENCFF102VYH) 1 943 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF274 in NT2/D1 from ENCODE 3 (ENCFF102VYH)\ parent encTfChipPk off\ shortLabel NT2/D1 ZNF274\ subGroups cellType=NT2_D1 factor=ZNF274\ track encTfChipPkENCFF102VYH\ MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_ctss_fwd Tc:MdmToLps_10hrD2+ bigWig Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_forward 0 943 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4 regulation 0 bigDataUrl 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0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor2%20%28t17%20Subject2%29.CNhs13396.12812-136H4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12812-136H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_10hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7NrsfV0422111RawRep2 MCF-7 NRSF V11 2 bigWig 1.000000 4857.000000 MCF-7 NRSF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 944 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 NRSF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent 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/gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor2%20%28t17%20Subject2%29.CNhs13396.12812-136H4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12812-136H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_10hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_tpm_rev Tc:MdmToLps_10hrD2- bigWig Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_reverse 1 944 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor2%20%28t17%20Subject2%29.CNhs13396.12812-136H4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12812-136H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_10hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7P300V0422111PkRep1 MCF-7 p300 V11 1 broadPeak MCF-7 p300 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 945 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 p300 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 p300 V11 1\ subGroups view=Peaks factor=P300 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7P300V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF007ATC OCI-LY1 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in OCI-LY1 from ENCODE 3 (ENCFF007ATC) 1 945 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in OCI-LY1 from ENCODE 3 (ENCFF007ATC)\ parent encTfChipPk off\ shortLabel OCI-LY1 EZH2\ subGroups cellType=OCI-LY1 factor=EZH2\ track encTfChipPkENCFF007ATC\ MonocytederivedMacrophagesResponseToLPS10hrDonor3T17Subject3_CNhs13327_ctss_fwd Tc:MdmToLps_10hrD3+ bigWig Monocyte-derived macrophages response to LPS, 10hr, donor3 (t17 Subject3)_CNhs13327_12910-138A3_forward 0 945 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12910-138A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor3%20%28t17%20Subject3%29.CNhs13327.12910-138A3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor3 (t17 Subject3)_CNhs13327_12910-138A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12910-138A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_10hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS10hrDonor3T17Subject3_CNhs13327_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12910-138A3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS10hrDonor3T17Subject3_CNhs13327_tpm_fwd Tc:MdmToLps_10hrD3+ bigWig Monocyte-derived macrophages response to LPS, 10hr, donor3 (t17 Subject3)_CNhs13327_12910-138A3_forward 1 945 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12910-138A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor3%20%28t17%20Subject3%29.CNhs13327.12910-138A3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor3 (t17 Subject3)_CNhs13327_12910-138A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12910-138A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_10hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS10hrDonor3T17Subject3_CNhs13327_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12910-138A3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7P300V0422111RawRep1 MCF-7 p300 V11 1 bigWig 1.000000 2515.000000 MCF-7 p300 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 946 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 p300 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 p300 V11 1\ subGroups view=RawSignal factor=P300 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7P300V0422111RawRep1\ type bigWig 1.000000 2515.000000\ encTfChipPkENCFF653ZMJ OCI-LY3 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in OCI-LY3 from ENCODE 3 (ENCFF653ZMJ) 1 946 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in OCI-LY3 from ENCODE 3 (ENCFF653ZMJ)\ parent encTfChipPk off\ shortLabel OCI-LY3 CTCF\ subGroups cellType=OCI-LY3 factor=CTCF\ track encTfChipPkENCFF653ZMJ\ MonocytederivedMacrophagesResponseToLPS10hrDonor3T17Subject3_CNhs13327_ctss_rev Tc:MdmToLps_10hrD3- bigWig Monocyte-derived macrophages response to LPS, 10hr, donor3 (t17 Subject3)_CNhs13327_12910-138A3_reverse 0 946 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12910-138A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor3%20%28t17%20Subject3%29.CNhs13327.12910-138A3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor3 (t17 Subject3)_CNhs13327_12910-138A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12910-138A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_10hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS10hrDonor3T17Subject3_CNhs13327_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12910-138A3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS10hrDonor3T17Subject3_CNhs13327_tpm_rev Tc:MdmToLps_10hrD3- bigWig Monocyte-derived macrophages response to LPS, 10hr, donor3 (t17 Subject3)_CNhs13327_12910-138A3_reverse 1 946 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12910-138A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor3%20%28t17%20Subject3%29.CNhs13327.12910-138A3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor3 (t17 Subject3)_CNhs13327_12910-138A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12910-138A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_10hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS10hrDonor3T17Subject3_CNhs13327_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12910-138A3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7P300V0422111PkRep2 MCF-7 p300 V11 2 broadPeak MCF-7 p300 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 947 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 p300 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 p300 V11 2\ subGroups view=Peaks factor=P300 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7P300V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF862VFJ OCI-LY7 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in OCI-LY7 from ENCODE 3 (ENCFF862VFJ) 1 947 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in OCI-LY7 from ENCODE 3 (ENCFF862VFJ)\ parent encTfChipPk off\ shortLabel OCI-LY7 CTCF\ subGroups cellType=OCI-LY7 factor=CTCF\ track encTfChipPkENCFF862VFJ\ MonocytederivedMacrophagesResponseToLPS12hrDonor1T18Subject1_CNhs12813_ctss_fwd Tc:MdmToLps_12hrD1+ bigWig Monocyte-derived macrophages response to LPS, 12hr, donor1 (t18 Subject1)_CNhs12813_12715-135F6_forward 0 947 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12715-135F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor1%20%28t18%20Subject1%29.CNhs12813.12715-135F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor1 (t18 Subject1)_CNhs12813_12715-135F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12715-135F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_12hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS12hrDonor1T18Subject1_CNhs12813_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12715-135F6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS12hrDonor1T18Subject1_CNhs12813_tpm_fwd Tc:MdmToLps_12hrD1+ bigWig Monocyte-derived macrophages response to LPS, 12hr, donor1 (t18 Subject1)_CNhs12813_12715-135F6_forward 1 947 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12715-135F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor1%20%28t18%20Subject1%29.CNhs12813.12715-135F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor1 (t18 Subject1)_CNhs12813_12715-135F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12715-135F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_12hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS12hrDonor1T18Subject1_CNhs12813_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12715-135F6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7P300V0422111RawRep2 MCF-7 p300 V11 2 bigWig 1.000000 1971.000000 MCF-7 p300 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 948 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 p300 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent 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/gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor1%20%28t18%20Subject1%29.CNhs12813.12715-135F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor1 (t18 Subject1)_CNhs12813_12715-135F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12715-135F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_12hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS12hrDonor1T18Subject1_CNhs12813_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12715-135F6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS12hrDonor1T18Subject1_CNhs12813_tpm_rev Tc:MdmToLps_12hrD1- bigWig Monocyte-derived macrophages response to LPS, 12hr, donor1 (t18 Subject1)_CNhs12813_12715-135F6_reverse 1 948 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12715-135F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor1%20%28t18%20Subject1%29.CNhs12813.12715-135F6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor1 (t18 Subject1)_CNhs12813_12715-135F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12715-135F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_12hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS12hrDonor1T18Subject1_CNhs12813_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12715-135F6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Pmlsc71910V0422111PkRep1 MCF-7 PML V11 1 broadPeak MCF-7 PML v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 949 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 PML v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 PML V11 1\ subGroups view=Peaks factor=PMLSC71910 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7Pmlsc71910V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF299FOE PC-3 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in PC-3 from ENCODE 3 (ENCFF299FOE) 1 949 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in PC-3 from ENCODE 3 (ENCFF299FOE)\ parent encTfChipPk off\ shortLabel PC-3 EZH2\ subGroups cellType=PC-3 factor=EZH2\ track encTfChipPkENCFF299FOE\ MonocytederivedMacrophagesResponseToLPS12hrDonor2T18Subject2_CNhs13397_ctss_fwd Tc:MdmToLps_12hrD2+ bigWig Monocyte-derived macrophages response to LPS, 12hr, donor2 (t18 Subject2)_CNhs13397_12813-136H5_forward 0 949 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12813-136H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor2%20%28t18%20Subject2%29.CNhs13397.12813-136H5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor2 (t18 Subject2)_CNhs13397_12813-136H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12813-136H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_12hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS12hrDonor2T18Subject2_CNhs13397_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12813-136H5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS12hrDonor2T18Subject2_CNhs13397_tpm_fwd Tc:MdmToLps_12hrD2+ bigWig Monocyte-derived macrophages response to LPS, 12hr, donor2 (t18 Subject2)_CNhs13397_12813-136H5_forward 1 949 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12813-136H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor2%20%28t18%20Subject2%29.CNhs13397.12813-136H5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor2 (t18 Subject2)_CNhs13397_12813-136H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12813-136H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_12hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS12hrDonor2T18Subject2_CNhs13397_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12813-136H5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Pmlsc71910V0422111RawRep1 MCF-7 PML V11 1 bigWig 1.000000 5349.000000 MCF-7 PML v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 950 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 PML v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent 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/gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor2%20%28t18%20Subject2%29.CNhs13397.12813-136H5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor2 (t18 Subject2)_CNhs13397_12813-136H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12813-136H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_12hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS12hrDonor2T18Subject2_CNhs13397_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12813-136H5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS12hrDonor2T18Subject2_CNhs13397_tpm_rev Tc:MdmToLps_12hrD2- bigWig Monocyte-derived macrophages response to LPS, 12hr, donor2 (t18 Subject2)_CNhs13397_12813-136H5_reverse 1 950 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12813-136H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor2%20%28t18%20Subject2%29.CNhs13397.12813-136H5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor2 (t18 Subject2)_CNhs13397_12813-136H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12813-136H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_12hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS12hrDonor2T18Subject2_CNhs13397_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12813-136H5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Pmlsc71910V0422111PkRep2 MCF-7 PML V11 2 broadPeak MCF-7 PML v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 951 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 PML v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 PML V11 2\ subGroups view=Peaks factor=PMLSC71910 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7Pmlsc71910V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF808UCP PC-9 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in PC-9 from ENCODE 3 (ENCFF808UCP) 1 951 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in PC-9 from ENCODE 3 (ENCFF808UCP)\ parent encTfChipPk off\ shortLabel PC-9 EZH2\ subGroups cellType=PC-9 factor=EZH2\ track encTfChipPkENCFF808UCP\ MonocytederivedMacrophagesResponseToLPS12hrDonor3T18Subject3_CNhs13328_ctss_fwd Tc:MdmToLps_12hrD3+ bigWig Monocyte-derived macrophages response to LPS, 12hr, donor3 (t18 Subject3)_CNhs13328_12911-138A4_forward 0 951 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12911-138A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor3%20%28t18%20Subject3%29.CNhs13328.12911-138A4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor3 (t18 Subject3)_CNhs13328_12911-138A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12911-138A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_12hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS12hrDonor3T18Subject3_CNhs13328_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12911-138A4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS12hrDonor3T18Subject3_CNhs13328_tpm_fwd Tc:MdmToLps_12hrD3+ bigWig Monocyte-derived macrophages response to LPS, 12hr, donor3 (t18 Subject3)_CNhs13328_12911-138A4_forward 1 951 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12911-138A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor3%20%28t18%20Subject3%29.CNhs13328.12911-138A4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor3 (t18 Subject3)_CNhs13328_12911-138A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12911-138A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_12hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS12hrDonor3T18Subject3_CNhs13328_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12911-138A4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Pmlsc71910V0422111RawRep2 MCF-7 PML V11 2 bigWig 1.000000 5768.000000 MCF-7 PML v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 952 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 PML v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent 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/gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor3%20%28t18%20Subject3%29.CNhs13328.12911-138A4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor3 (t18 Subject3)_CNhs13328_12911-138A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12911-138A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_12hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS12hrDonor3T18Subject3_CNhs13328_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12911-138A4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS12hrDonor3T18Subject3_CNhs13328_tpm_rev Tc:MdmToLps_12hrD3- bigWig Monocyte-derived macrophages response to LPS, 12hr, donor3 (t18 Subject3)_CNhs13328_12911-138A4_reverse 1 952 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12911-138A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor3%20%28t18%20Subject3%29.CNhs13328.12911-138A4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor3 (t18 Subject3)_CNhs13328_12911-138A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12911-138A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_12hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS12hrDonor3T18Subject3_CNhs13328_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12911-138A4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Rad21V0422111PkRep1 MCF-7 RAD21 V11 1 broadPeak MCF-7 RAD21 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 953 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 RAD21 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 RAD21 V11 1\ subGroups view=Peaks factor=RAD21 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7Rad21V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF070SAY PFSK-1 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in PFSK-1 from ENCODE 3 (ENCFF070SAY) 1 953 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TAF1 in PFSK-1 from ENCODE 3 (ENCFF070SAY)\ parent encTfChipPk off\ shortLabel PFSK-1 TAF1\ subGroups cellType=PFSK-1 factor=TAF1\ track encTfChipPkENCFF070SAY\ MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_ctss_fwd Tc:MdmToLps_14hrD1+ bigWig Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_forward 0 953 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor1%20%28t19%20Subject1%29.CNhs12929.12716-135F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12716-135F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_14hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_tpm_fwd Tc:MdmToLps_14hrD1+ bigWig Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_forward 1 953 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor1%20%28t19%20Subject1%29.CNhs12929.12716-135F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12716-135F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_14hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Rad21V0422111RawRep1 MCF-7 RAD21 V11 1 bigWig 1.000000 1848.000000 MCF-7 RAD21 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 954 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 RAD21 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent 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/gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor1%20%28t19%20Subject1%29.CNhs12929.12716-135F7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12716-135F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_14hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_tpm_rev Tc:MdmToLps_14hrD1- bigWig Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_reverse 1 954 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7 regulation 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/gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor2%20%28t19%20Subject2%29.CNhs13398.12814-136H6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12814-136H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_14hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_tpm_fwd Tc:MdmToLps_14hrD2+ bigWig Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_forward 1 955 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor2%20%28t19%20Subject2%29.CNhs13398.12814-136H6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12814-136H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_14hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Rad21V0422111RawRep2 MCF-7 RAD21 V11 2 bigWig 1.000000 2157.000000 MCF-7 RAD21 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 956 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 RAD21 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent 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0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor2%20%28t19%20Subject2%29.CNhs13398.12814-136H6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12814-136H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_14hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Sin3ak20V0422111PkRep1 MCF-7 Sin3A V11 1 broadPeak MCF-7 Sin3Ak-20 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 957 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 Sin3Ak-20 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ 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/gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor3%20%28t19%20Subject3%29.CNhs13329.12912-138A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12912-138A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_14hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_tpm_fwd Tc:MdmToLps_14hrD3+ bigWig Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_forward 1 957 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor3%20%28t19%20Subject3%29.CNhs13329.12912-138A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12912-138A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_14hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Sin3ak20V0422111RawRep1 MCF-7 Sin3A V11 1 bigWig 1.000000 4124.000000 MCF-7 Sin3Ak-20 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 958 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Sin3Ak-20 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent 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/gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor3%20%28t19%20Subject3%29.CNhs13329.12912-138A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12912-138A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_14hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_tpm_rev Tc:MdmToLps_14hrD3- bigWig Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_reverse 1 958 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor3%20%28t19%20Subject3%29.CNhs13329.12912-138A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12912-138A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_14hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Sin3ak20V0422111PkRep2 MCF-7 Sin3A V11 2 broadPeak MCF-7 Sin3Ak-20 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 959 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 Sin3Ak-20 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ 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/gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor2%20%28t20%20Subject2%29.CNhs13399.12815-136H7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12815-136H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_16hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_tpm_fwd Tc:MdmToLps_16hrD2+ bigWig Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_forward 1 959 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor2%20%28t20%20Subject2%29.CNhs13399.12815-136H7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12815-136H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_16hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Sin3ak20V0422111RawRep2 MCF-7 Sin3A V11 2 bigWig 1.000000 2923.000000 MCF-7 Sin3Ak-20 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 960 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Sin3Ak-20 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent 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/gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor2%20%28t20%20Subject2%29.CNhs13399.12815-136H7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12815-136H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_16hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_tpm_rev Tc:MdmToLps_16hrD2- bigWig Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_reverse 1 960 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor2%20%28t20%20Subject2%29.CNhs13399.12815-136H7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12815-136H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_16hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7SrfV0422111PkRep1 MCF-7 SRF V11 1 broadPeak MCF-7 SRF v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 961 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 SRF v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 SRF V11 1\ subGroups view=Peaks factor=SRF cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7SrfV0422111PkRep1\ type broadPeak\ encTfChipPkENCFF320GJE PeyerPatch CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF320GJE) 1 961 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF320GJE)\ parent encTfChipPk off\ shortLabel PeyerPatch CTCF 3\ subGroups cellType=Peyers_patch factor=CTCF\ track encTfChipPkENCFF320GJE\ MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_ctss_fwd Tc:MdmToLps_16hrD3+ bigWig Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_forward 0 961 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor3%20%28t20%20Subject3%29.CNhs13330.12913-138A6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12913-138A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_16hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_tpm_fwd Tc:MdmToLps_16hrD3+ bigWig Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_forward 1 961 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor3%20%28t20%20Subject3%29.CNhs13330.12913-138A6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12913-138A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_16hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7SrfV0422111RawRep1 MCF-7 SRF V11 1 bigWig 1.000000 3892.000000 MCF-7 SRF v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 962 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 SRF v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal 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/gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor3%20%28t20%20Subject3%29.CNhs13330.12913-138A6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12913-138A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_16hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_tpm_rev Tc:MdmToLps_16hrD3- bigWig Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_reverse 1 962 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor3%20%28t20%20Subject3%29.CNhs13330.12913-138A6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12913-138A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_16hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7SrfV0422111PkRep2 MCF-7 SRF V11 2 broadPeak MCF-7 SRF v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 963 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 SRF v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 SRF V11 2\ subGroups view=Peaks factor=SRF cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7SrfV0422111PkRep2\ type broadPeak\ encTfChipPkENCFF721JKB PeyrPtch POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in Peyer's_patch from ENCODE 3 (ENCFF721JKB) 1 963 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in Peyer's_patch from ENCODE 3 (ENCFF721JKB)\ parent encTfChipPk off\ shortLabel PeyrPtch POLR2A 1\ subGroups cellType=Peyers_patch factor=POLR2A\ track encTfChipPkENCFF721JKB\ MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_ctss_fwd Tc:MdmToLps_18hrD1+ bigWig Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_forward 0 963 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor1%20%28t21%20Subject1%29.CNhs12814.12718-135F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12718-135F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_18hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_tpm_fwd Tc:MdmToLps_18hrD1+ bigWig Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_forward 1 963 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor1%20%28t21%20Subject1%29.CNhs12814.12718-135F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12718-135F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_18hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7SrfV0422111RawRep2 MCF-7 SRF V11 2 bigWig 1.000000 3989.000000 MCF-7 SRF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 964 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 SRF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 SRF V11 2\ subGroups view=RawSignal factor=SRF cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsMcf7SrfV0422111RawRep2\ type bigWig 1.000000 3989.000000\ encTfChipPkENCFF485EPD PeyrPtch POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in Peyer's_patch from ENCODE 3 (ENCFF485EPD) 1 964 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in Peyer's_patch from ENCODE 3 (ENCFF485EPD)\ parent encTfChipPk off\ shortLabel PeyrPtch POLR2A 2\ subGroups cellType=Peyers_patch factor=POLR2A\ track encTfChipPkENCFF485EPD\ MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_ctss_rev Tc:MdmToLps_18hrD1- bigWig Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_reverse 0 964 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor1%20%28t21%20Subject1%29.CNhs12814.12718-135F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12718-135F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_18hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_tpm_rev Tc:MdmToLps_18hrD1- bigWig Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_reverse 1 964 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor1%20%28t21%20Subject1%29.CNhs12814.12718-135F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12718-135F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_18hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Taf1V0422111PkRep1 MCF-7 TAF1 V11 1 broadPeak MCF-7 TAF1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 965 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 TAF1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 TAF1 V11 1\ subGroups view=Peaks factor=TAF1 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7Taf1V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF241JKV RWPE1 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in RWPE1 from ENCODE 3 (ENCFF241JKV) 1 965 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in RWPE1 from ENCODE 3 (ENCFF241JKV)\ parent encTfChipPk off\ shortLabel RWPE1 CTCF\ subGroups cellType=RWPE1 factor=CTCF\ track encTfChipPkENCFF241JKV\ MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_ctss_fwd Tc:MdmToLps_18hrD2+ bigWig Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_forward 0 965 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor2%20%28t21%20Subject2%29.CNhs13400.12816-136H8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12816-136H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_18hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_tpm_fwd Tc:MdmToLps_18hrD2+ bigWig Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_forward 1 965 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor2%20%28t21%20Subject2%29.CNhs13400.12816-136H8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12816-136H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_18hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Taf1V0422111RawRep1 MCF-7 TAF1 V11 1 bigWig 1.000000 5264.000000 MCF-7 TAF1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 966 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 TAF1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 TAF1 V11 1\ subGroups view=RawSignal factor=TAF1 cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsMcf7Taf1V0422111RawRep1\ type bigWig 1.000000 5264.000000\ encTfChipPkENCFF788CHY RWPE2 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in RWPE2 from ENCODE 3 (ENCFF788CHY) 1 966 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in RWPE2 from ENCODE 3 (ENCFF788CHY)\ parent encTfChipPk off\ shortLabel RWPE2 CTCF\ subGroups cellType=RWPE2 factor=CTCF\ track encTfChipPkENCFF788CHY\ MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_ctss_rev Tc:MdmToLps_18hrD2- bigWig Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_reverse 0 966 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor2%20%28t21%20Subject2%29.CNhs13400.12816-136H8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12816-136H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_18hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_tpm_rev Tc:MdmToLps_18hrD2- bigWig Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_reverse 1 966 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor2%20%28t21%20Subject2%29.CNhs13400.12816-136H8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12816-136H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_18hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Taf1V0422111PkRep2 MCF-7 TAF1 V11 2 broadPeak MCF-7 TAF1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 967 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 TAF1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel MCF-7 TAF1 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/gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor1%20%28t22%20Subject1%29.CNhs12931.12719-135G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12719-135G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_20hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_tpm_rev Tc:MdmToLps_20hrD1- bigWig Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_reverse 1 970 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1 regulation 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/gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor3%20%28t22%20Subject3%29.CNhs13332.12915-138A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12915-138A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_20hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_tpm_fwd Tc:MdmToLps_20hrD3+ bigWig Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_forward 1 973 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor3%20%28t22%20Subject3%29.CNhs13332.12915-138A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12915-138A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_20hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Tead4sc101184V0422111RawRep1 MCF-7 TEAD4 V11 1 bigWig 1.000000 3806.000000 MCF-7 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 974 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent 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0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor3%20%28t22%20Subject3%29.CNhs13332.12915-138A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12915-138A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_20hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Tead4sc101184V0422111PkRep2 MCF-7 TEAD4 V11 2 broadPeak MCF-7 TEAD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 975 0 0 0 127 127 127 0 0 0 regulation 1 longLabel MCF-7 TEAD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel 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/gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor1%20%28t23%20Subject1%29.CNhs12815.12720-135G2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12720-135G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_22hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_tpm_fwd Tc:MdmToLps_22hrD1+ bigWig Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_forward 1 975 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor1%20%28t23%20Subject1%29.CNhs12815.12720-135G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12720-135G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7Tead4sc101184V0422111RawRep2 MCF-7 TEAD4 V11 2 bigWig 1.000000 2132.000000 MCF-7 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 976 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent 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/gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor1%20%28t23%20Subject1%29.CNhs12815.12720-135G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12720-135G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_22hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_tpm_rev Tc:MdmToLps_22hrD1- bigWig Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_reverse 1 976 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor1%20%28t23%20Subject1%29.CNhs12815.12720-135G2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12720-135G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7RxlchV0422111RawRep1 MCF-7 RvXL V11 1 bigWig 1.000000 2386.000000 MCF-7 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 977 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent 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0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor2%20%28t23%20Subject2%29.CNhs13402.12818-136I1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12818-136I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7RxlchV0422111RawRep2 MCF-7 RvXL V11 2 bigWig 1.000000 7379.000000 MCF-7 Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 978 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent 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/gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor2%20%28t23%20Subject2%29.CNhs13402.12818-136I1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12818-136I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_22hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_tpm_rev Tc:MdmToLps_22hrD2- bigWig Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_reverse 1 978 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor2%20%28t23%20Subject2%29.CNhs13402.12818-136I1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12818-136I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7RxlchV0422111RawRep3 MCF-7 RvXL V11 3 bigWig 1.000000 7325.000000 MCF-7 Control v042211.1 ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB 2 979 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Control v042211.1 ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB\ parent 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/gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor3%20%28t23%20Subject3%29.CNhs13333.12916-138A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12916-138A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_22hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_tpm_fwd Tc:MdmToLps_22hrD3+ bigWig Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_forward 1 979 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor3%20%28t23%20Subject3%29.CNhs13333.12916-138A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12916-138A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsMcf7RxlchV0422111RawRep4 MCF-7 RvXL V11 4 bigWig 1.000000 2769.000000 MCF-7 Control v042211.1 ChIP-seq Raw Signal Rep 4 from ENCODE/HAIB 2 980 0 0 0 127 127 127 0 0 0 regulation 0 longLabel MCF-7 Control v042211.1 ChIP-seq Raw Signal Rep 4 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel MCF-7 RvXL V11 4\ subGroups view=RawSignal factor=zRXLCH cellType=t2MCF7 protocol=V0422111 treatment=NONE rep=rep4\ track wgEncodeHaibTfbsMcf7RxlchV0422111RawRep4\ type bigWig 1.000000 2769.000000\ encTfChipPkENCFF814REB SK-N-SH RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in SK-N-SH from ENCODE 3 (ENCFF814REB) 1 980 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in SK-N-SH from ENCODE 3 (ENCFF814REB)\ parent encTfChipPk off\ shortLabel SK-N-SH RCOR1\ subGroups cellType=SK-N-SH factor=RCOR1\ track encTfChipPkENCFF814REB\ MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_ctss_rev Tc:MdmToLps_22hrD3- bigWig Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_reverse 0 980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor3%20%28t23%20Subject3%29.CNhs13333.12916-138A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12916-138A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_22hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_tpm_rev Tc:MdmToLps_22hrD3- bigWig Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_reverse 1 980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor3%20%28t23%20Subject3%29.CNhs13333.12916-138A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12916-138A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF781PAL SK-N-SH REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in SK-N-SH from ENCODE 3 (ENCFF781PAL) 1 981 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in SK-N-SH from ENCODE 3 (ENCFF781PAL)\ parent encTfChipPk off\ shortLabel SK-N-SH REST 1\ subGroups cellType=SK-N-SH factor=REST\ track encTfChipPkENCFF781PAL\ wgEncodeHaibTfbsSknshElf1V0422111PkRep1 SKSH ELF1 V11 1 broadPeak SK-N-SH ELF1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 981 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH ELF1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH ELF1 V11 1\ subGroups view=Peaks factor=ELF1SC631 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshElf1V0422111PkRep1\ type broadPeak\ MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_ctss_fwd Tc:MdmToLps_24hrD1+ bigWig Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_forward 0 981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor1%20%28t24%20Subject1%29.CNhs12932.12721-135G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12721-135G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_24hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_tpm_fwd Tc:MdmToLps_24hrD1+ bigWig Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_forward 1 981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor1%20%28t24%20Subject1%29.CNhs12932.12721-135G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12721-135G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF946MYA SK-N-SH REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in SK-N-SH from ENCODE 3 (ENCFF946MYA) 1 982 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in SK-N-SH from ENCODE 3 (ENCFF946MYA)\ parent encTfChipPk off\ shortLabel SK-N-SH REST 2\ subGroups cellType=SK-N-SH factor=REST\ track encTfChipPkENCFF946MYA\ wgEncodeHaibTfbsSknshElf1V0422111RawRep1 SKSH ELF1 V11 1 bigWig 1.000000 2578.000000 SK-N-SH ELF1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 982 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH ELF1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH ELF1 V11 1\ subGroups view=RawSignal factor=ELF1SC631 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshElf1V0422111RawRep1\ type bigWig 1.000000 2578.000000\ MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_ctss_rev Tc:MdmToLps_24hrD1- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_reverse 0 982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor1%20%28t24%20Subject1%29.CNhs12932.12721-135G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12721-135G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_24hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_tpm_rev Tc:MdmToLps_24hrD1- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_reverse 1 982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor1%20%28t24%20Subject1%29.CNhs12932.12721-135G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12721-135G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF849EEH SK-N-SH RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in SK-N-SH from ENCODE 3 (ENCFF849EEH) 1 983 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RFX5 in SK-N-SH from ENCODE 3 (ENCFF849EEH)\ parent encTfChipPk off\ shortLabel SK-N-SH RFX5\ subGroups cellType=SK-N-SH factor=RFX5\ track encTfChipPkENCFF849EEH\ wgEncodeHaibTfbsSknshElf1V0422111PkRep2 SKSH ELF1 V11 2 broadPeak SK-N-SH ELF1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 983 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH ELF1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH ELF1 V11 2\ subGroups view=Peaks factor=ELF1SC631 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshElf1V0422111PkRep2\ type broadPeak\ MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_ctss_fwd Tc:MdmToLps_24hrD2+ bigWig Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_forward 0 983 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor2%20%28t24%20Subject2%29.CNhs13403.12819-136I2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12819-136I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_24hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_tpm_fwd Tc:MdmToLps_24hrD2+ bigWig Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_forward 1 983 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor2%20%28t24%20Subject2%29.CNhs13403.12819-136I2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12819-136I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF650GZO SK-N-SH SIN3A narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in SK-N-SH from ENCODE 3 (ENCFF650GZO) 1 984 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SIN3A in SK-N-SH from ENCODE 3 (ENCFF650GZO)\ parent encTfChipPk off\ shortLabel SK-N-SH SIN3A\ subGroups cellType=SK-N-SH factor=SIN3A\ track encTfChipPkENCFF650GZO\ wgEncodeHaibTfbsSknshElf1V0422111RawRep2 SKSH ELF1 V11 2 bigWig 1.000000 2789.000000 SK-N-SH ELF1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 984 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH ELF1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH ELF1 V11 2\ subGroups view=RawSignal factor=ELF1SC631 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshElf1V0422111RawRep2\ type bigWig 1.000000 2789.000000\ MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_ctss_rev Tc:MdmToLps_24hrD2- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_reverse 0 984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor2%20%28t24%20Subject2%29.CNhs13403.12819-136I2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12819-136I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_24hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_tpm_rev Tc:MdmToLps_24hrD2- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_reverse 1 984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor2%20%28t24%20Subject2%29.CNhs13403.12819-136I2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12819-136I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF883EGI SK-N-SH TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in SK-N-SH from ENCODE 3 (ENCFF883EGI) 1 985 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TAF1 in SK-N-SH from ENCODE 3 (ENCFF883EGI)\ parent encTfChipPk off\ shortLabel SK-N-SH TAF1\ subGroups cellType=SK-N-SH factor=TAF1\ track encTfChipPkENCFF883EGI\ wgEncodeHaibTfbsSknshFosl2V0422111PkRep1 SKSH FOSL2 V11 1 broadPeak SK-N-SH FOSL2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 985 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH FOSL2 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH FOSL2 V11 1\ subGroups view=Peaks factor=FOSL2 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshFosl2V0422111PkRep1\ type broadPeak\ MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_ctss_fwd Tc:MdmToLps_24hrD3+ bigWig Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_forward 0 985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor3%20%28t24%20Subject3%29.CNhs13334.12917-138B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12917-138B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_24hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_tpm_fwd Tc:MdmToLps_24hrD3+ bigWig Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_forward 1 985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor3%20%28t24%20Subject3%29.CNhs13334.12917-138B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12917-138B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF588NYF SK-N-SH USF1 narrowPeak Transcription Factor ChIP-seq Peaks of USF1 in SK-N-SH from ENCODE 3 (ENCFF588NYF) 1 986 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of USF1 in SK-N-SH from ENCODE 3 (ENCFF588NYF)\ parent encTfChipPk off\ shortLabel SK-N-SH USF1\ subGroups cellType=SK-N-SH factor=USF1\ track encTfChipPkENCFF588NYF\ wgEncodeHaibTfbsSknshFosl2V0422111RawRep1 SKSH FOSL2 V11 1 bigWig 1.000000 2370.000000 SK-N-SH FOSL2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 986 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH FOSL2 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH FOSL2 V11 1\ subGroups view=RawSignal factor=FOSL2 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshFosl2V0422111RawRep1\ type bigWig 1.000000 2370.000000\ MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_ctss_rev Tc:MdmToLps_24hrD3- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_reverse 0 986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor3%20%28t24%20Subject3%29.CNhs13334.12917-138B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12917-138B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_24hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_tpm_rev Tc:MdmToLps_24hrD3- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_reverse 1 986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor3%20%28t24%20Subject3%29.CNhs13334.12917-138B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12917-138B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF617AHB SK-N-SH USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in SK-N-SH from ENCODE 3 (ENCFF617AHB) 1 987 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of USF2 in SK-N-SH from ENCODE 3 (ENCFF617AHB)\ parent encTfChipPk off\ shortLabel SK-N-SH USF2\ subGroups cellType=SK-N-SH factor=USF2\ track encTfChipPkENCFF617AHB\ wgEncodeHaibTfbsSknshFosl2V0422111PkRep2 SKSH FOSL2 V11 2 broadPeak SK-N-SH FOSL2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 987 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH FOSL2 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH FOSL2 V11 2\ subGroups view=Peaks factor=FOSL2 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshFosl2V0422111PkRep2\ type broadPeak\ MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_ctss_fwd Tc:MdmToLps_36hrD1+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_forward 0 987 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor1%20%28t25%20Subject1%29.CNhs12933.12722-135G4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12722-135G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_tpm_fwd Tc:MdmToLps_36hrD1+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_forward 1 987 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor1%20%28t25%20Subject1%29.CNhs12933.12722-135G4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12722-135G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF958LUB SK-N-SH YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in SK-N-SH from ENCODE 3 (ENCFF958LUB) 1 988 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of YY1 in SK-N-SH from ENCODE 3 (ENCFF958LUB)\ parent encTfChipPk off\ shortLabel SK-N-SH YY1\ subGroups cellType=SK-N-SH factor=YY1\ track encTfChipPkENCFF958LUB\ wgEncodeHaibTfbsSknshFosl2V0422111RawRep2 SKSH FOSL2 V11 2 bigWig 1.000000 2596.000000 SK-N-SH FOSL2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 988 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH FOSL2 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH FOSL2 V11 2\ subGroups view=RawSignal factor=FOSL2 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshFosl2V0422111RawRep2\ type bigWig 1.000000 2596.000000\ MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_ctss_rev Tc:MdmToLps_36hrD1- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_reverse 0 988 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor1%20%28t25%20Subject1%29.CNhs12933.12722-135G4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12722-135G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_tpm_rev Tc:MdmToLps_36hrD1- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_reverse 1 988 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor1%20%28t25%20Subject1%29.CNhs12933.12722-135G4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12722-135G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshFoxm1sc502V0422111PkRep1 SKSH FOXM1 V11 1 broadPeak SK-N-SH FOXM1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 989 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH FOXM1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH FOXM1 V11 1\ subGroups view=Peaks factor=FOXM1SC502 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshFoxm1sc502V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF099NBE SU-DHL-6 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in SU-DHL-6 from ENCODE 3 (ENCFF099NBE) 1 989 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in SU-DHL-6 from ENCODE 3 (ENCFF099NBE)\ parent encTfChipPk off\ shortLabel SU-DHL-6 CTCF\ subGroups cellType=SU-DHL-6 factor=CTCF\ track encTfChipPkENCFF099NBE\ MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_ctss_fwd Tc:MdmToLps_36hrD2+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_forward 0 989 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor2%20%28t25%20Subject2%29.CNhs13404.12820-136I3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12820-136I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_tpm_fwd Tc:MdmToLps_36hrD2+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_forward 1 989 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor2%20%28t25%20Subject2%29.CNhs13404.12820-136I3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12820-136I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshFoxm1sc502V0422111RawRep1 SKSH FOXM1 V11 1 bigWig 1.000000 9229.000000 SK-N-SH FOXM1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 990 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH FOXM1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH FOXM1 V11 1\ subGroups view=RawSignal factor=FOXM1SC502 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshFoxm1sc502V0422111RawRep1\ type bigWig 1.000000 9229.000000\ encTfChipPkENCFF903ZMF T47D CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in T47D from ENCODE 3 (ENCFF903ZMF) 1 990 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in T47D from ENCODE 3 (ENCFF903ZMF)\ parent encTfChipPk off\ shortLabel T47D CTCF\ subGroups cellType=T47D factor=CTCF\ track encTfChipPkENCFF903ZMF\ MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_ctss_rev Tc:MdmToLps_36hrD2- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_reverse 0 990 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor2%20%28t25%20Subject2%29.CNhs13404.12820-136I3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12820-136I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_tpm_rev Tc:MdmToLps_36hrD2- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_reverse 1 990 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor2%20%28t25%20Subject2%29.CNhs13404.12820-136I3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12820-136I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshFoxm1sc502V0422111PkRep2 SKSH FOXM1 V11 2 broadPeak SK-N-SH FOXM1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 991 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH FOXM1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH FOXM1 V11 2\ subGroups view=Peaks factor=FOXM1SC502 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshFoxm1sc502V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF475MKH T47D ESR1 1 narrowPeak Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF475MKH) 1 991 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF475MKH)\ parent encTfChipPk off\ shortLabel T47D ESR1 1\ subGroups cellType=T47D factor=ESR1\ track encTfChipPkENCFF475MKH\ MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_ctss_fwd Tc:MdmToLps_36hrD3+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_forward 0 991 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor3%20%28t25%20Subject3%29.CNhs13335.12918-138B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12918-138B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_tpm_fwd Tc:MdmToLps_36hrD3+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_forward 1 991 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor3%20%28t25%20Subject3%29.CNhs13335.12918-138B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12918-138B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshFoxm1sc502V0422111RawRep2 SKSH FOXM1 V11 2 bigWig 1.000000 2279.000000 SK-N-SH FOXM1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 992 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH FOXM1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH FOXM1 V11 2\ subGroups view=RawSignal factor=FOXM1SC502 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshFoxm1sc502V0422111RawRep2\ type bigWig 1.000000 2279.000000\ encTfChipPkENCFF499QUE T47D ESR1 2 narrowPeak Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF499QUE) 1 992 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF499QUE)\ parent encTfChipPk off\ shortLabel T47D ESR1 2\ subGroups cellType=T47D factor=ESR1\ track encTfChipPkENCFF499QUE\ MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_ctss_rev Tc:MdmToLps_36hrD3- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_reverse 0 992 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor3%20%28t25%20Subject3%29.CNhs13335.12918-138B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12918-138B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_tpm_rev Tc:MdmToLps_36hrD3- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_reverse 1 992 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor3%20%28t25%20Subject3%29.CNhs13335.12918-138B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12918-138B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshGabpV0422111PkRep1 SKSH GABP V11 1 broadPeak SK-N-SH GABP v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 993 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH GABP v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH GABP V11 1\ subGroups view=Peaks factor=GABP cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshGabpV0422111PkRep1\ type broadPeak\ encTfChipPkENCFF516GZM T47D ESR1 3 narrowPeak Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF516GZM) 1 993 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF516GZM)\ parent encTfChipPk off\ shortLabel T47D ESR1 3\ subGroups cellType=T47D factor=ESR1\ track encTfChipPkENCFF516GZM\ MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_ctss_fwd Tc:MdmToLps_48hrD1+ bigWig Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_forward 0 993 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor1%20%28t26%20Subject1%29.CNhs11942.12723-135G5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12723-135G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_48hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_tpm_fwd Tc:MdmToLps_48hrD1+ bigWig Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_forward 1 993 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor1%20%28t26%20Subject1%29.CNhs11942.12723-135G5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12723-135G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_48hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshGabpV0422111RawRep1 SKSH GABP V11 1 bigWig 1.000000 4783.000000 SK-N-SH GABP v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 994 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH GABP v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH GABP V11 1\ subGroups view=RawSignal factor=GABP cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshGabpV0422111RawRep1\ type bigWig 1.000000 4783.000000\ encTfChipPkENCFF132WOI T47D FOXA1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in T47D from ENCODE 3 (ENCFF132WOI) 1 994 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in T47D from ENCODE 3 (ENCFF132WOI)\ parent encTfChipPk off\ shortLabel T47D FOXA1\ subGroups cellType=T47D factor=FOXA1\ track encTfChipPkENCFF132WOI\ MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_ctss_rev Tc:MdmToLps_48hrD1- bigWig Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_reverse 0 994 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor1%20%28t26%20Subject1%29.CNhs11942.12723-135G5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12723-135G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_48hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_tpm_rev Tc:MdmToLps_48hrD1- bigWig Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_reverse 1 994 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor1%20%28t26%20Subject1%29.CNhs11942.12723-135G5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12723-135G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_48hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshGabpV0422111PkRep2 SKSH GABP V11 2 broadPeak SK-N-SH GABP v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 995 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH GABP v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH GABP V11 2\ subGroups view=Peaks factor=GABP cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshGabpV0422111PkRep2\ type broadPeak\ encTfChipPkENCFF058XAD T47D GATA3 narrowPeak Transcription Factor ChIP-seq Peaks of GATA3 in T47D from ENCODE 3 (ENCFF058XAD) 1 995 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATA3 in T47D from ENCODE 3 (ENCFF058XAD)\ parent encTfChipPk off\ shortLabel T47D GATA3\ subGroups cellType=T47D factor=GATA3\ track encTfChipPkENCFF058XAD\ MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_ctss_fwd Tc:MdmToLps_48hrD2+ bigWig Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_forward 0 995 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor2%20%28t26%20Subject2%29.CNhs13405.12821-136I4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12821-136I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_48hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_tpm_fwd Tc:MdmToLps_48hrD2+ bigWig Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_forward 1 995 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor2%20%28t26%20Subject2%29.CNhs13405.12821-136I4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12821-136I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_48hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshGabpV0422111RawRep2 SKSH GABP V11 2 bigWig 1.000000 3356.000000 SK-N-SH GABP v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 996 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH GABP v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH GABP V11 2\ subGroups view=RawSignal factor=GABP cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshGabpV0422111RawRep2\ type bigWig 1.000000 3356.000000\ encTfChipPkENCFF274TYW T47D JUND narrowPeak Transcription Factor ChIP-seq Peaks of JUND in T47D from ENCODE 3 (ENCFF274TYW) 1 996 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUND in T47D from ENCODE 3 (ENCFF274TYW)\ parent encTfChipPk off\ shortLabel T47D JUND\ subGroups cellType=T47D factor=JUND\ track encTfChipPkENCFF274TYW\ MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_ctss_rev Tc:MdmToLps_48hrD2- bigWig Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_reverse 0 996 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor2%20%28t26%20Subject2%29.CNhs13405.12821-136I4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12821-136I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_48hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_tpm_rev Tc:MdmToLps_48hrD2- bigWig Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_reverse 1 996 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor2%20%28t26%20Subject2%29.CNhs13405.12821-136I4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12821-136I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_48hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_ctss_fwd MyoblastToMyotubes_Day00D1+ bigWig Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_forward 0 997 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor1.CNhs13847.13469-144I4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13469-144I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_tpm_fwd MyoblastToMyotubes_Day00D1+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_forward 1 997 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14586.13496-145C4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13496-145C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshGata3V0422111PkRep1 SKSH GATA3 V11 1 broadPeak SK-N-SH GATA3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 997 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH GATA3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH GATA3 V11 1\ subGroups view=Peaks factor=GATA3SC268 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshGata3V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF304IDM VCaP CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in VCaP from ENCODE 3 (ENCFF304IDM) 1 997 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in VCaP from ENCODE 3 (ENCFF304IDM)\ parent encTfChipPk off\ shortLabel VCaP CTCF\ subGroups cellType=VCaP factor=CTCF\ track encTfChipPkENCFF304IDM\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_ctss_fwd MyoblastToMyotubes_Day00D1+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_forward 0 998 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14586.13496-145C4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13496-145C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_tpm_fwd MyoblastToMyotubes_Day00D1+ bigWig Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_forward 1 998 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor1.CNhs13847.13469-144I4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13469-144I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshGata3V0422111RawRep1 SKSH GATA3 V11 1 bigWig 1.000000 2507.000000 SK-N-SH GATA3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 998 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH GATA3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH GATA3 V11 1\ subGroups view=RawSignal factor=GATA3SC268 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshGata3V0422111RawRep1\ type bigWig 1.000000 2507.000000\ encTfChipPkENCFF924OMX WERI-Rb-1 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in WERI-Rb-1 from ENCODE 3 (ENCFF924OMX) 1 998 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in WERI-Rb-1 from ENCODE 3 (ENCFF924OMX)\ parent encTfChipPk off\ shortLabel WERI-Rb-1 CTCF\ subGroups cellType=WERI-Rb-1 factor=CTCF\ track encTfChipPkENCFF924OMX\ MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_ctss_rev MyoblastToMyotubes_Day00D1- bigWig Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_reverse 0 999 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor1.CNhs13847.13469-144I4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13469-144I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_tpm_rev MyoblastToMyotubes_Day00D1- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_reverse 1 999 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14586.13496-145C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13496-145C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshGata3V0422111PkRep2 SKSH GATA3 V11 2 broadPeak SK-N-SH GATA3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 999 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH GATA3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH GATA3 V11 2\ subGroups view=Peaks factor=GATA3SC268 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshGata3V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF016EUX WI38 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in WI38 from ENCODE 3 (ENCFF016EUX) 1 999 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in WI38 from ENCODE 3 (ENCFF016EUX)\ parent encTfChipPk off\ shortLabel WI38 CTCF\ subGroups cellType=WI38 factor=CTCF\ track encTfChipPkENCFF016EUX\ encTfChipPkENCFF030BPR 22Rv1 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in 22Rv1 from ENCODE 3 (ENCFF030BPR) 1 1000 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in 22Rv1 from ENCODE 3 (ENCFF030BPR)\ parent encTfChipPk off\ shortLabel 22Rv1 CTCF 1\ subGroups cellType=X22Rv1 factor=CTCF\ track encTfChipPkENCFF030BPR\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_ctss_rev MyoblastToMyotubes_Day00D1- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_reverse 0 1000 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14586.13496-145C4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13496-145C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_tpm_rev MyoblastToMyotubes_Day00D1- bigWig Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_reverse 1 1000 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor1.CNhs13847.13469-144I4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13469-144I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshGata3V0422111RawRep2 SKSH GATA3 V11 2 bigWig 1.000000 2619.000000 SK-N-SH GATA3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1000 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH GATA3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH GATA3 V11 2\ subGroups view=RawSignal factor=GATA3SC268 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshGata3V0422111RawRep2\ type bigWig 1.000000 2619.000000\ encTfChipPkENCFF259XYR 22Rv1 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in 22Rv1 from ENCODE 3 (ENCFF259XYR) 1 1001 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in 22Rv1 from ENCODE 3 (ENCFF259XYR)\ parent encTfChipPk off\ shortLabel 22Rv1 CTCF 2\ subGroups cellType=X22Rv1 factor=CTCF\ track encTfChipPkENCFF259XYR\ MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_ctss_fwd MyoblastToMyotubes_Day00D2+ bigWig Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_forward 0 1001 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor2.CNhs14567.13478-145A4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13478-145A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_tpm_fwd MyoblastToMyotubes_Day00D2+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_forward 1 1001 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14596.13505-145D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13505-145D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshJundV0422111PkRep1 SKSH JunD V11 1 broadPeak SK-N-SH JunD v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1001 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH JunD v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH JunD V11 1\ subGroups view=Peaks factor=JUND cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshJundV0422111PkRep1\ type broadPeak\ encTfChipPkENCFF445OFX 22Rv1 ZFX narrowPeak Transcription Factor ChIP-seq Peaks of ZFX in 22Rv1 from ENCODE 3 (ENCFF445OFX) 1 1002 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZFX in 22Rv1 from ENCODE 3 (ENCFF445OFX)\ parent encTfChipPk off\ shortLabel 22Rv1 ZFX\ subGroups cellType=X22Rv1 factor=ZFX\ track encTfChipPkENCFF445OFX\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_ctss_fwd MyoblastToMyotubes_Day00D2+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_forward 0 1002 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14596.13505-145D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13505-145D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_tpm_fwd MyoblastToMyotubes_Day00D2+ bigWig Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_forward 1 1002 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor2.CNhs14567.13478-145A4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13478-145A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshJundV0422111RawRep1 SKSH JunD V11 1 bigWig 1.000000 7472.000000 SK-N-SH JunD v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1002 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH JunD v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH JunD V11 1\ subGroups view=RawSignal factor=JUND cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshJundV0422111RawRep1\ type bigWig 1.000000 7472.000000\ encTfChipPkENCFF627DHJ adrenlGlnd CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF627DHJ) 1 1003 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF627DHJ)\ parent encTfChipPk off\ shortLabel adrenlGlnd CTCF 1\ subGroups cellType=adrenal_gland factor=CTCF\ track encTfChipPkENCFF627DHJ\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_ctss_rev MyoblastToMyotubes_Day00D2- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_reverse 0 1003 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14596.13505-145D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13505-145D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_tpm_rev MyoblastToMyotubes_Day00D2- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_reverse 1 1003 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14596.13505-145D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13505-145D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshJundV0422111PkRep2 SKSH JunD V11 2 broadPeak SK-N-SH JunD v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1003 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH JunD v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH JunD V11 2\ subGroups view=Peaks factor=JUND cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshJundV0422111PkRep2\ type broadPeak\ encTfChipPkENCFF215GGE adrenlGlnd CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF215GGE) 1 1004 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF215GGE)\ parent encTfChipPk off\ shortLabel adrenlGlnd CTCF 2\ subGroups cellType=adrenal_gland factor=CTCF\ track encTfChipPkENCFF215GGE\ MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_ctss_rev MyoblastToMyotubes_Day00D2- bigWig Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_reverse 0 1004 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor2.CNhs14567.13478-145A4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13478-145A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_tpm_rev MyoblastToMyotubes_Day00D2- bigWig Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_reverse 1 1004 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor2.CNhs14567.13478-145A4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13478-145A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshJundV0422111RawRep2 SKSH JunD V11 2 bigWig 1.000000 5127.000000 SK-N-SH JunD v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1004 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH JunD v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH JunD V11 2\ subGroups view=RawSignal factor=JUND cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshJundV0422111RawRep2\ type bigWig 1.000000 5127.000000\ encTfChipPkENCFF622LJD adrenlGlnd CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF622LJD) 1 1005 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF622LJD)\ parent encTfChipPk off\ shortLabel adrenlGlnd CTCF 3\ subGroups cellType=adrenal_gland factor=CTCF\ track encTfChipPkENCFF622LJD\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_ctss_fwd MyoblastToMyotubes_Day00D3+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_forward 0 1005 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14605.13514-145E4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13514-145E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_tpm_fwd MyoblastToMyotubes_Day00D3+ bigWig Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_forward 1 1005 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor3.CNhs14577.13487-145B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13487-145B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_tpm_fwd\ type bigWig\ url 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MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_ctss_fwd MyoblastToMyotubes_Day00D3+ bigWig Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_forward 0 1006 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor3.CNhs14577.13487-145B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13487-145B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_tpm_fwd MyoblastToMyotubes_Day00D3+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_forward 1 1006 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14605.13514-145E4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13514-145E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_tpm_fwd\ type bigWig\ url 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encTfChipPkENCFF033XFJ\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_ctss_rev MyoblastToMyotubes_Day00D3- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_reverse 0 1007 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14605.13514-145E4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13514-145E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_tpm_rev MyoblastToMyotubes_Day00D3- bigWig Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_reverse 1 1007 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor3.CNhs14577.13487-145B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13487-145B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_tpm_rev\ type bigWig\ url 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MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_ctss_rev MyoblastToMyotubes_Day00D3- bigWig Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_reverse 0 1008 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor3.CNhs14577.13487-145B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13487-145B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_tpm_rev MyoblastToMyotubes_Day00D3- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_reverse 1 1008 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14605.13514-145E4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13514-145E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshMaxV0422111RawRep2 SKSH Max V11 2 bigWig 1.000000 2153.000000 SK-N-SH Max v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1008 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Max v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH Max V11 2\ subGroups view=RawSignal factor=MAX cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshMaxV0422111RawRep2\ type bigWig 1.000000 2153.000000\ encTfChipPkENCFF147RBN ascendAorta CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in ascending_aorta from ENCODE 3 (ENCFF147RBN) 1 1009 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in ascending_aorta from ENCODE 3 (ENCFF147RBN)\ parent encTfChipPk off\ shortLabel ascendAorta CTCF\ subGroups cellType=ascending_aorta factor=CTCF\ track encTfChipPkENCFF147RBN\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_ctss_fwd MyoblastToMyotubes_Day01D1+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_forward 0 1009 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14587.13497-145C5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13497-145C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_tpm_fwd MyoblastToMyotubes_Day01D1+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_forward 1 1009 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14587.13497-145C5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13497-145C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshMef2aV0422111PkRep1 SKSH MEF2A V11 1 broadPeak SK-N-SH MEF2A v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1009 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH MEF2A v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH MEF2A V11 1\ subGroups view=Peaks factor=MEF2A cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshMef2aV0422111PkRep1\ type broadPeak\ encTfChipPkENCFF415WKV astrocyte CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in astrocyte from ENCODE 3 (ENCFF415WKV) 1 1010 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in astrocyte from ENCODE 3 (ENCFF415WKV)\ parent encTfChipPk off\ shortLabel astrocyte CTCF\ subGroups cellType=astrocyte factor=CTCF\ track encTfChipPkENCFF415WKV\ MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_ctss_fwd MyoblastToMyotubes_Day01D1+ bigWig Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_forward 0 1010 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor1.CNhs13848.13470-144I5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13470-144I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_tpm_fwd MyoblastToMyotubes_Day01D1+ bigWig Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_forward 1 1010 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor1.CNhs13848.13470-144I5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13470-144I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshMef2aV0422111RawRep1 SKSH MEF2A V11 1 bigWig 1.000000 3079.000000 SK-N-SH MEF2A v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1010 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH MEF2A v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH MEF2A V11 1\ subGroups view=RawSignal factor=MEF2A cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshMef2aV0422111RawRep1\ type bigWig 1.000000 3079.000000\ encTfChipPkENCFF660HHS cerebAstrcyt CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in astrocyte_of_the_cerebellum from ENCODE 3 (ENCFF660HHS) 1 1011 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in astrocyte_of_the_cerebellum from ENCODE 3 (ENCFF660HHS)\ parent encTfChipPk off\ shortLabel cerebAstrcyt CTCF\ subGroups cellType=astrocyte_of_the_cerebellum factor=CTCF\ track encTfChipPkENCFF660HHS\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_ctss_rev MyoblastToMyotubes_Day01D1- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_reverse 0 1011 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14587.13497-145C5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13497-145C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_tpm_rev MyoblastToMyotubes_Day01D1- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_reverse 1 1011 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14587.13497-145C5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13497-145C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshMef2aV0422111PkRep2 SKSH MEF2A V11 2 broadPeak SK-N-SH MEF2A v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1011 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH MEF2A v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH MEF2A V11 2\ subGroups view=Peaks factor=MEF2A cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshMef2aV0422111PkRep2\ type broadPeak\ MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_ctss_rev MyoblastToMyotubes_Day01D1- bigWig Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_reverse 0 1012 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor1.CNhs13848.13470-144I5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13470-144I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_tpm_rev MyoblastToMyotubes_Day01D1- bigWig Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_reverse 1 1012 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor1.CNhs13848.13470-144I5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13470-144I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshMef2aV0422111RawRep2 SKSH MEF2A V11 2 bigWig 1.000000 2068.000000 SK-N-SH MEF2A v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1012 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH MEF2A v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH MEF2A V11 2\ subGroups view=RawSignal factor=MEF2A cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshMef2aV0422111RawRep2\ type bigWig 1.000000 2068.000000\ encTfChipPkENCFF312HCK spinlAstrcyt CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in astrocyte_of_the_spinal_cord from ENCODE 3 (ENCFF312HCK) 1 1012 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in astrocyte_of_the_spinal_cord from ENCODE 3 (ENCFF312HCK)\ parent encTfChipPk off\ shortLabel spinlAstrcyt CTCF\ subGroups cellType=astrocyte_of_the_spinal_cord factor=CTCF\ track encTfChipPkENCFF312HCK\ encTfChipPkENCFF693PZH biplNeuron CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in bipolar_neuron from ENCODE 3 (ENCFF693PZH) 1 1013 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in bipolar_neuron from ENCODE 3 (ENCFF693PZH)\ parent encTfChipPk off\ shortLabel biplNeuron CTCF 1\ subGroups cellType=bipolar_neuron factor=CTCF\ track encTfChipPkENCFF693PZH\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_ctss_fwd MyoblastToMyotubes_Day01D2+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_forward 0 1013 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14597.13506-145D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13506-145D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_tpm_fwd MyoblastToMyotubes_Day01D2+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_forward 1 1013 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14597.13506-145D5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13506-145D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshNficsc81335V0422111PkRep1 SKSH NFIC V11 1 broadPeak SK-N-SH NFIC v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1013 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH NFIC v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH NFIC V11 1\ subGroups view=Peaks factor=NFICSC81335 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshNficsc81335V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF355OQM biplNeuron CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in bipolar_neuron from ENCODE 3 (ENCFF355OQM) 1 1014 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in bipolar_neuron from ENCODE 3 (ENCFF355OQM)\ parent encTfChipPk off\ shortLabel biplNeuron CTCF 2\ subGroups cellType=bipolar_neuron factor=CTCF\ track encTfChipPkENCFF355OQM\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_ctss_rev MyoblastToMyotubes_Day01D2- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_reverse 0 1014 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14597.13506-145D5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13506-145D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_tpm_rev MyoblastToMyotubes_Day01D2- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_reverse 1 1014 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14597.13506-145D5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13506-145D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshNficsc81335V0422111RawRep1 SKSH NFIC V11 1 bigWig 1.000000 1686.000000 SK-N-SH NFIC v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1014 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH NFIC v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH NFIC V11 1\ subGroups view=RawSignal factor=NFICSC81335 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshNficsc81335V0422111RawRep1\ type bigWig 1.000000 1686.000000\ encTfChipPkENCFF501XJA bipNeuron SMARCA4 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA4 in bipolar_neuron from ENCODE 3 (ENCFF501XJA) 1 1015 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SMARCA4 in bipolar_neuron from ENCODE 3 (ENCFF501XJA)\ parent encTfChipPk off\ shortLabel bipNeuron SMARCA4\ subGroups cellType=bipolar_neuron factor=SMARCA4\ track encTfChipPkENCFF501XJA\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_ctss_fwd MyoblastToMyotubes_Day01D3+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_forward 0 1015 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14606.13515-145E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13515-145E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_tpm_fwd MyoblastToMyotubes_Day01D3+ bigWig Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_forward 1 1015 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor3.CNhs14578.13488-145B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13488-145B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshNficsc81335V0422111PkRep2 SKSH NFIC V11 2 broadPeak SK-N-SH NFIC v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1015 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH NFIC v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH NFIC V11 2\ subGroups view=Peaks factor=NFICSC81335 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshNficsc81335V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF537YZK biplNeuron ZEB1 narrowPeak Transcription Factor ChIP-seq Peaks of ZEB1 in bipolar_neuron from ENCODE 3 (ENCFF537YZK) 1 1016 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZEB1 in bipolar_neuron from ENCODE 3 (ENCFF537YZK)\ parent encTfChipPk off\ shortLabel biplNeuron ZEB1\ subGroups cellType=bipolar_neuron factor=ZEB1\ track encTfChipPkENCFF537YZK\ MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_ctss_fwd MyoblastToMyotubes_Day01D3+ bigWig Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_forward 0 1016 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor3.CNhs14578.13488-145B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13488-145B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_tpm_fwd MyoblastToMyotubes_Day01D3+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_forward 1 1016 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14606.13515-145E5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13515-145E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshNficsc81335V0422111RawRep2 SKSH NFIC V11 2 bigWig 1.000000 3476.000000 SK-N-SH NFIC v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1016 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH NFIC v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH NFIC V11 2\ subGroups view=RawSignal factor=NFICSC81335 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshNficsc81335V0422111RawRep2\ type bigWig 1.000000 3476.000000\ MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_ctss_rev MyoblastToMyotubes_Day01D3- bigWig Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_reverse 0 1017 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor3.CNhs14578.13488-145B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13488-145B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_tpm_rev MyoblastToMyotubes_Day01D3- bigWig Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_reverse 1 1017 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor3.CNhs14578.13488-145B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13488-145B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF622QGA pancreas CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF622QGA) 1 1017 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF622QGA)\ parent encTfChipPk off\ shortLabel pancreas CTCF 1\ subGroups cellType=body_of_pancreas factor=CTCF\ track encTfChipPkENCFF622QGA\ wgEncodeHaibTfbsSknshNrsfPcr2xPkRep1 SKSH NRSF PCR2 1 broadPeak SK-N-SH NRSF PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1017 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH NRSF PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH NRSF PCR2 1\ subGroups view=Peaks factor=NRSF cellType=t2SKNSH protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshNrsfPcr2xPkRep1\ type broadPeak\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_ctss_rev MyoblastToMyotubes_Day01D3- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_reverse 0 1018 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14606.13515-145E5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13515-145E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_tpm_rev MyoblastToMyotubes_Day01D3- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_reverse 1 1018 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14606.13515-145E5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13515-145E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF628TDS pancreas CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF628TDS) 1 1018 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF628TDS)\ parent encTfChipPk off\ shortLabel pancreas CTCF 2\ subGroups cellType=body_of_pancreas factor=CTCF\ track encTfChipPkENCFF628TDS\ wgEncodeHaibTfbsSknshNrsfPcr2xRawRep1 SKSH NRSF PCR2 1 bigWig 0.210706 74.168404 SK-N-SH NRSF PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1018 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH NRSF PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH NRSF PCR2 1\ subGroups view=RawSignal factor=NRSF cellType=t2SKNSH protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshNrsfPcr2xRawRep1\ type bigWig 0.210706 74.168404\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_ctss_fwd MyoblastToMyotubes_Day02D1+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_forward 0 1019 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14588.13498-145C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13498-145C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_tpm_fwd MyoblastToMyotubes_Day02D1+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_forward 1 1019 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14588.13498-145C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13498-145C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF156VNT pancreas CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF156VNT) 1 1019 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF156VNT)\ parent encTfChipPk off\ shortLabel pancreas CTCF 3\ subGroups cellType=body_of_pancreas factor=CTCF\ track encTfChipPkENCFF156VNT\ wgEncodeHaibTfbsSknshNrsfPcr2xPkRep2 SKSH NRSF PCR2 2 broadPeak SK-N-SH NRSF PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1019 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH NRSF PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH NRSF PCR2 2\ subGroups view=Peaks factor=NRSF cellType=t2SKNSH protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshNrsfPcr2xPkRep2\ type broadPeak\ MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_ctss_fwd MyoblastToMyotubes_Day02D1+ bigWig Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_forward 0 1020 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor1.CNhs13849.13471-144I6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13471-144I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_tpm_fwd MyoblastToMyotubes_Day02D1+ bigWig Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_forward 1 1020 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor1.CNhs13849.13471-144I6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13471-144I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF437LBW pancreas CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF437LBW) 1 1020 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF437LBW)\ parent encTfChipPk off\ shortLabel pancreas CTCF 4\ subGroups cellType=body_of_pancreas factor=CTCF\ track encTfChipPkENCFF437LBW\ wgEncodeHaibTfbsSknshNrsfPcr2xRawRep2 SKSH NRSF PCR2 2 bigWig 0.153816 196.076996 SK-N-SH NRSF PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1020 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH NRSF PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH NRSF PCR2 2\ subGroups view=RawSignal factor=NRSF cellType=t2SKNSH protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshNrsfPcr2xRawRep2\ type bigWig 0.153816 196.076996\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_ctss_rev MyoblastToMyotubes_Day02D1- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_reverse 0 1021 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14588.13498-145C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13498-145C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_tpm_rev MyoblastToMyotubes_Day02D1- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_reverse 1 1021 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14588.13498-145C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13498-145C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF760CPU pancreas POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF760CPU) 1 1021 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF760CPU)\ parent encTfChipPk off\ shortLabel pancreas POLR2A 1\ subGroups cellType=body_of_pancreas factor=POLR2A\ track encTfChipPkENCFF760CPU\ wgEncodeHaibTfbsSknshNrsfV0416101PkRep1 SKSH NRSF V101 1 broadPeak SK-N-SH NRSF v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1021 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH NRSF v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH NRSF V101 1\ subGroups view=Peaks factor=NRSF cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshNrsfV0416101PkRep1\ type broadPeak\ MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_ctss_rev MyoblastToMyotubes_Day02D1- bigWig Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_reverse 0 1022 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor1.CNhs13849.13471-144I6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13471-144I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_tpm_rev MyoblastToMyotubes_Day02D1- bigWig Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_reverse 1 1022 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor1.CNhs13849.13471-144I6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13471-144I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF665RHY pancreas POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF665RHY) 1 1022 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF665RHY)\ parent encTfChipPk off\ shortLabel pancreas POLR2A 2\ subGroups cellType=body_of_pancreas factor=POLR2A\ track encTfChipPkENCFF665RHY\ wgEncodeHaibTfbsSknshNrsfV0416101RawRep1 SKSH NRSF V101 1 bigWig 0.183296 201.212997 SK-N-SH NRSF v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1022 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH NRSF v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH NRSF V101 1\ subGroups view=RawSignal factor=NRSF cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshNrsfV0416101RawRep1\ type bigWig 0.183296 201.212997\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_ctss_fwd MyoblastToMyotubes_Day02D2+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_forward 0 1023 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14598.13507-145D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13507-145D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_tpm_fwd MyoblastToMyotubes_Day02D2+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_forward 1 1023 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14598.13507-145D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13507-145D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF628UBC pancreas POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF628UBC) 1 1023 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF628UBC)\ parent encTfChipPk off\ shortLabel pancreas POLR2A 3\ subGroups cellType=body_of_pancreas factor=POLR2A\ track encTfChipPkENCFF628UBC\ wgEncodeHaibTfbsSknshNrsfV0416101PkRep2 SKSH NRSF V101 2 broadPeak SK-N-SH NRSF v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1023 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH NRSF v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH NRSF V101 2\ subGroups view=Peaks factor=NRSF cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshNrsfV0416101PkRep2\ type broadPeak\ MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_ctss_fwd MyoblastToMyotubes_Day02D2+ bigWig Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_forward 0 1024 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor2.CNhs14570.13480-145A6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13480-145A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_tpm_fwd MyoblastToMyotubes_Day02D2+ bigWig Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_forward 1 1024 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor2.CNhs14570.13480-145A6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13480-145A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF386FNQ pancreas POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF386FNQ) 1 1024 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF386FNQ)\ parent encTfChipPk off\ shortLabel pancreas POLR2A 4\ subGroups cellType=body_of_pancreas factor=POLR2A\ track encTfChipPkENCFF386FNQ\ wgEncodeHaibTfbsSknshNrsfV0416101RawRep2 SKSH NRSF V101 2 bigWig 0.138782 176.009995 SK-N-SH NRSF v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1024 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH NRSF v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH NRSF V101 2\ subGroups view=RawSignal factor=NRSF cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshNrsfV0416101RawRep2\ type bigWig 0.138782 176.009995\ encTfChipPkENCFF065LHJ brainMicEndo CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in brain_microvascular_endothelial_cell from ENCODE 3 (ENCFF065LHJ) 1 1025 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in brain_microvascular_endothelial_cell from ENCODE 3 (ENCFF065LHJ)\ parent encTfChipPk off\ shortLabel brainMicEndo CTCF\ subGroups cellType=brain_microvascular_endothelial_cell factor=CTCF\ track encTfChipPkENCFF065LHJ\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_ctss_rev MyoblastToMyotubes_Day02D2- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_reverse 0 1025 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14598.13507-145D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13507-145D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_tpm_rev MyoblastToMyotubes_Day02D2- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_reverse 1 1025 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14598.13507-145D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13507-145D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshP300V0422111PkRep1 SKSH p300 V11 1 broadPeak SK-N-SH p300 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1025 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH p300 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH p300 V11 1\ subGroups view=Peaks factor=P300 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshP300V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF974SIH breastEpi CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF974SIH) 1 1026 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF974SIH)\ parent encTfChipPk off\ shortLabel breastEpi CTCF 1\ subGroups cellType=breast_epithelium factor=CTCF\ track encTfChipPkENCFF974SIH\ MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_ctss_rev MyoblastToMyotubes_Day02D2- bigWig Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_reverse 0 1026 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor2.CNhs14570.13480-145A6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13480-145A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_tpm_rev MyoblastToMyotubes_Day02D2- bigWig Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_reverse 1 1026 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor2.CNhs14570.13480-145A6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13480-145A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshP300V0422111RawRep1 SKSH p300 V11 1 bigWig 1.000000 2575.000000 SK-N-SH p300 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1026 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH p300 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH p300 V11 1\ subGroups view=RawSignal factor=P300 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshP300V0422111RawRep1\ type bigWig 1.000000 2575.000000\ encTfChipPkENCFF782GCQ breastEpi CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF782GCQ) 1 1027 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF782GCQ)\ parent encTfChipPk off\ shortLabel breastEpi CTCF 2\ subGroups cellType=breast_epithelium factor=CTCF\ track encTfChipPkENCFF782GCQ\ MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_ctss_fwd MyoblastToMyotubes_Day02D3+ bigWig Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_forward 0 1027 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor3.CNhs14579.13489-145B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13489-145B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_tpm_fwd MyoblastToMyotubes_Day02D3+ bigWig Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_forward 1 1027 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor3.CNhs14579.13489-145B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13489-145B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshP300V0422111PkRep2 SKSH p300 V11 2 broadPeak SK-N-SH p300 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1027 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH p300 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH p300 V11 2\ subGroups view=Peaks factor=P300 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshP300V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF722THT breastEpi CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF722THT) 1 1028 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF722THT)\ parent encTfChipPk off\ shortLabel breastEpi CTCF 3\ subGroups cellType=breast_epithelium factor=CTCF\ track encTfChipPkENCFF722THT\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_ctss_fwd MyoblastToMyotubes_Day02D3+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_forward 0 1028 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14607.13516-145E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13516-145E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_tpm_fwd MyoblastToMyotubes_Day02D3+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_forward 1 1028 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14607.13516-145E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13516-145E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshP300V0422111RawRep2 SKSH p300 V11 2 bigWig 1.000000 2365.000000 SK-N-SH p300 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1028 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH p300 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH p300 V11 2\ subGroups view=RawSignal factor=P300 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshP300V0422111RawRep2\ type bigWig 1.000000 2365.000000\ encTfChipPkENCFF079ZWQ breastEpi EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF079ZWQ) 1 1029 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF079ZWQ)\ parent encTfChipPk off\ shortLabel breastEpi EP300 1\ subGroups cellType=breast_epithelium factor=EP300\ track encTfChipPkENCFF079ZWQ\ MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_ctss_rev MyoblastToMyotubes_Day02D3- bigWig Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_reverse 0 1029 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor3.CNhs14579.13489-145B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13489-145B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_tpm_rev MyoblastToMyotubes_Day02D3- bigWig Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_reverse 1 1029 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor3.CNhs14579.13489-145B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13489-145B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshPbx3V0422111PkRep1 SKSH PBx3 V11 1 broadPeak SK-N-SH PBx3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1029 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH PBx3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH PBx3 V11 1\ subGroups view=Peaks factor=PBX3 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshPbx3V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF996UFS breastEpi EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF996UFS) 1 1030 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF996UFS)\ parent encTfChipPk off\ shortLabel breastEpi EP300 2\ subGroups cellType=breast_epithelium factor=EP300\ track encTfChipPkENCFF996UFS\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_ctss_rev MyoblastToMyotubes_Day02D3- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_reverse 0 1030 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14607.13516-145E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13516-145E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_tpm_rev MyoblastToMyotubes_Day02D3- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_reverse 1 1030 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14607.13516-145E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13516-145E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshPbx3V0422111RawRep1 SKSH PBx3 V11 1 bigWig 1.000000 2357.000000 SK-N-SH PBx3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1030 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH PBx3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH PBx3 V11 1\ subGroups view=RawSignal factor=PBX3 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshPbx3V0422111RawRep1\ type bigWig 1.000000 2357.000000\ encTfChipPkENCFF647SXX breastEpi EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF647SXX) 1 1031 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF647SXX)\ parent encTfChipPk off\ shortLabel breastEpi EP300 3\ subGroups cellType=breast_epithelium factor=EP300\ track encTfChipPkENCFF647SXX\ MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_ctss_fwd MyoblastToMyotubes_Day03D1+ bigWig Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_forward 0 1031 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor1.CNhs13850.13472-144I7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13472-144I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_tpm_fwd MyoblastToMyotubes_Day03D1+ bigWig Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_forward 1 1031 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor1.CNhs13850.13472-144I7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13472-144I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshPbx3V0422111PkRep2 SKSH PBx3 V11 2 broadPeak SK-N-SH PBx3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1031 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH PBx3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH PBx3 V11 2\ subGroups view=Peaks factor=PBX3 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshPbx3V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF804AVM breastEpi EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF804AVM) 1 1032 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF804AVM)\ parent encTfChipPk off\ shortLabel breastEpi EP300 4\ subGroups cellType=breast_epithelium factor=EP300\ track encTfChipPkENCFF804AVM\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_ctss_fwd MyoblastToMyotubes_Day03D1+ bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_forward 0 1032 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14589.13499-145C7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13499-145C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_tpm_fwd MyoblastToMyotubes_Day03D1+ bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_forward 1 1032 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14589.13499-145C7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13499-145C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshPbx3V0422111RawRep2 SKSH PBx3 V11 2 bigWig 1.000000 3850.000000 SK-N-SH PBx3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1032 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH PBx3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH PBx3 V11 2\ subGroups view=RawSignal factor=PBX3 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshPbx3V0422111RawRep2\ type bigWig 1.000000 3850.000000\ encTfChipPkENCFF575RKM brestEpi POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in breast_epithelium from ENCODE 3 (ENCFF575RKM) 1 1033 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in breast_epithelium from ENCODE 3 (ENCFF575RKM)\ parent encTfChipPk off\ shortLabel brestEpi POLR2A 1\ subGroups cellType=breast_epithelium factor=POLR2A\ track encTfChipPkENCFF575RKM\ MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_ctss_rev MyoblastToMyotubes_Day03D1- bigWig Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_reverse 0 1033 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor1.CNhs13850.13472-144I7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13472-144I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_tpm_rev MyoblastToMyotubes_Day03D1- bigWig Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_reverse 1 1033 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor1.CNhs13850.13472-144I7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13472-144I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshPol24h8V0416101PkRep1 SKSH Pol2-4H8 V101 1 broadPeak SK-N-SH Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1033 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH Pol2-4H8 V101 1\ subGroups view=Peaks factor=POL24H8 cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshPol24h8V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF433ZKP brestEpi POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in breast_epithelium from ENCODE 3 (ENCFF433ZKP) 1 1034 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in breast_epithelium from ENCODE 3 (ENCFF433ZKP)\ parent encTfChipPk off\ shortLabel brestEpi POLR2A 2\ subGroups cellType=breast_epithelium factor=POLR2A\ track encTfChipPkENCFF433ZKP\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_ctss_rev MyoblastToMyotubes_Day03D1- bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_reverse 0 1034 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14589.13499-145C7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13499-145C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_tpm_rev MyoblastToMyotubes_Day03D1- bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_reverse 1 1034 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14589.13499-145C7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13499-145C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshPol24h8V0416101RawRep1 SKSH Pol2-4H8 V101 1 bigWig 0.220326 220.104996 SK-N-SH Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1034 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH Pol2-4H8 V101 1\ subGroups view=RawSignal factor=POL24H8 cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshPol24h8V0416101RawRep1\ type bigWig 0.220326 220.104996\ encTfChipPkENCFF344UBE heartFibro CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in cardiac_fibroblast from ENCODE 3 (ENCFF344UBE) 1 1035 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in cardiac_fibroblast from ENCODE 3 (ENCFF344UBE)\ parent encTfChipPk off\ shortLabel heartFibro CTCF\ subGroups cellType=cardiac_fibroblast factor=CTCF\ track encTfChipPkENCFF344UBE\ MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_ctss_fwd MyoblastToMyotubes_Day03D2+ bigWig Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_forward 0 1035 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor2.CNhs14571.13481-145A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13481-145A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_tpm_fwd MyoblastToMyotubes_Day03D2+ bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_forward 1 1035 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14599.13508-145D7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13508-145D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshPol24h8V0416101PkRep2 SKSH Pol2-4H8 V101 2 broadPeak SK-N-SH Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1035 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH Pol2-4H8 V101 2\ subGroups view=Peaks factor=POL24H8 cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshPol24h8V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF266GGD heartMuscl CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in cardiac_muscle_cell from ENCODE 3 (ENCFF266GGD) 1 1036 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in cardiac_muscle_cell from ENCODE 3 (ENCFF266GGD)\ parent encTfChipPk off\ shortLabel heartMuscl CTCF 1\ subGroups cellType=cardiac_muscle_cell factor=CTCF\ track encTfChipPkENCFF266GGD\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_ctss_fwd MyoblastToMyotubes_Day03D2+ bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_forward 0 1036 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14599.13508-145D7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13508-145D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_tpm_fwd MyoblastToMyotubes_Day03D2+ bigWig Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_forward 1 1036 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor2.CNhs14571.13481-145A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13481-145A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshPol24h8V0416101RawRep2 SKSH Pol2-4H8 V101 2 bigWig 0.100500 144.744995 SK-N-SH Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1036 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH Pol2-4H8 V101 2\ subGroups view=RawSignal factor=POL24H8 cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshPol24h8V0416101RawRep2\ type bigWig 0.100500 144.744995\ encTfChipPkENCFF251QXA heartMuscl CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in cardiac_muscle_cell from ENCODE 3 (ENCFF251QXA) 1 1037 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in cardiac_muscle_cell from ENCODE 3 (ENCFF251QXA)\ parent encTfChipPk off\ shortLabel heartMuscl CTCF 2\ subGroups cellType=cardiac_muscle_cell factor=CTCF\ track encTfChipPkENCFF251QXA\ MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_ctss_rev MyoblastToMyotubes_Day03D2- bigWig Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_reverse 0 1037 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor2.CNhs14571.13481-145A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13481-145A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_tpm_rev MyoblastToMyotubes_Day03D2- bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_reverse 1 1037 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14599.13508-145D7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13508-145D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshRxraV0422111PkRep1 SKSH RXRA V11 1 broadPeak SK-N-SH RXRA v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1037 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH RXRA v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH RXRA V11 1\ subGroups view=Peaks factor=RXRA cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshRxraV0422111PkRep1\ type broadPeak\ encTfChipPkENCFF700ILD chorPlexEpi CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in choroid_plexus_epithelial_cell from ENCODE 3 (ENCFF700ILD) 1 1038 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in choroid_plexus_epithelial_cell from ENCODE 3 (ENCFF700ILD)\ parent encTfChipPk off\ shortLabel chorPlexEpi CTCF\ subGroups cellType=choroid_plexus_epithelial_cell factor=CTCF\ track encTfChipPkENCFF700ILD\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_ctss_rev MyoblastToMyotubes_Day03D2- bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_reverse 0 1038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14599.13508-145D7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13508-145D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_tpm_rev MyoblastToMyotubes_Day03D2- bigWig Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_reverse 1 1038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor2.CNhs14571.13481-145A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13481-145A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshRxraV0422111RawRep1 SKSH RXRA V11 1 bigWig 1.000000 2902.000000 SK-N-SH RXRA v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1038 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH RXRA v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH RXRA V11 1\ subGroups view=RawSignal factor=RXRA cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshRxraV0422111RawRep1\ type bigWig 1.000000 2902.000000\ MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_ctss_fwd MyoblastToMyotubes_Day03D3+ bigWig Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_forward 0 1039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor3.CNhs14580.13490-145B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13490-145B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_tpm_fwd MyoblastToMyotubes_Day03D3+ bigWig Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_forward 1 1039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor3.CNhs14580.13490-145B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13490-145B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshRxraV0422111PkRep2 SKSH RXRA V11 2 broadPeak SK-N-SH RXRA v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1039 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH RXRA v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH RXRA V11 2\ subGroups view=Peaks factor=RXRA cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshRxraV0422111PkRep2\ type broadPeak\ encTfChipPkENCFF655XWN umbilVenEndo CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF655XWN) 1 1039 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF655XWN)\ parent encTfChipPk off\ shortLabel umbilVenEndo CTCF\ subGroups cellType=endothelial_cell_of_umbilical_vein factor=CTCF\ track encTfChipPkENCFF655XWN\ MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_ctss_rev MyoblastToMyotubes_Day03D3- bigWig Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_reverse 0 1040 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor3.CNhs14580.13490-145B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13490-145B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_tpm_rev MyoblastToMyotubes_Day03D3- bigWig Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_reverse 1 1040 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor3.CNhs14580.13490-145B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13490-145B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshRxraV0422111RawRep2 SKSH RXRA V11 2 bigWig 1.000000 2864.000000 SK-N-SH RXRA v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1040 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH RXRA v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH RXRA V11 2\ subGroups view=RawSignal factor=RXRA cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshRxraV0422111RawRep2\ type bigWig 1.000000 2864.000000\ encTfChipPkENCFF390MXI umbilVeinEndo FOS narrowPeak Transcription Factor ChIP-seq Peaks of FOS in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF390MXI) 1 1040 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOS in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF390MXI)\ parent encTfChipPk off\ shortLabel umbilVeinEndo FOS\ subGroups cellType=endothelial_cell_of_umbilical_vein factor=FOS\ track encTfChipPkENCFF390MXI\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_ctss_fwd MyoblastToMyotubes_Day04D1+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_forward 0 1041 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14590.13500-145C8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13500-145C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_tpm_fwd MyoblastToMyotubes_Day04D1+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_forward 1 1041 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14590.13500-145C8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13500-145C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshSin3ak20V0416101PkRep1 SKSH Sin3A V101 1 broadPeak SK-N-SH Sin3Ak-20 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1041 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH Sin3Ak-20 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH Sin3A V101 1\ subGroups view=Peaks factor=SIN3AK20 cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshSin3ak20V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF822SAU umbilVein GATA2 narrowPeak Transcription Factor ChIP-seq Peaks of GATA2 in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF822SAU) 1 1041 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATA2 in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF822SAU)\ parent encTfChipPk off\ shortLabel umbilVein GATA2\ subGroups cellType=endothelial_cell_of_umbilical_vein factor=GATA2\ track encTfChipPkENCFF822SAU\ MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_ctss_fwd MyoblastToMyotubes_Day04D1+ bigWig Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_forward 0 1042 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor1.CNhs13851.13473-144I8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13473-144I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_tpm_fwd MyoblastToMyotubes_Day04D1+ bigWig Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_forward 1 1042 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor1.CNhs13851.13473-144I8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13473-144I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshSin3ak20V0416101RawRep1 SKSH Sin3A V101 1 bigWig 0.119705 1108.650024 SK-N-SH Sin3Ak-20 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1042 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Sin3Ak-20 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH Sin3A V101 1\ subGroups view=RawSignal factor=SIN3AK20 cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshSin3ak20V0416101RawRep1\ type bigWig 0.119705 1108.650024\ encTfChipPkENCFF876VZQ umbilVein POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF876VZQ) 1 1042 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF876VZQ)\ parent encTfChipPk off\ shortLabel umbilVein POLR2A\ subGroups cellType=endothelial_cell_of_umbilical_vein factor=POLR2A\ track encTfChipPkENCFF876VZQ\ encTfChipPkENCFF528VFN esophagEpi CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in epithelial_cell_of_esophagus from ENCODE 3 (ENCFF528VFN) 1 1043 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in epithelial_cell_of_esophagus from ENCODE 3 (ENCFF528VFN)\ parent encTfChipPk off\ shortLabel esophagEpi CTCF\ subGroups cellType=epithelial_cell_of_esophagus factor=CTCF\ track encTfChipPkENCFF528VFN\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_ctss_rev MyoblastToMyotubes_Day04D1- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_reverse 0 1043 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14590.13500-145C8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13500-145C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_tpm_rev MyoblastToMyotubes_Day04D1- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_reverse 1 1043 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14590.13500-145C8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13500-145C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshSin3ak20V0416101PkRep2 SKSH Sin3A V101 2 broadPeak SK-N-SH Sin3Ak-20 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1043 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH Sin3Ak-20 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH Sin3A V101 2\ subGroups view=Peaks factor=SIN3AK20 cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshSin3ak20V0416101PkRep2\ type broadPeak\ MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_ctss_rev MyoblastToMyotubes_Day04D1- bigWig Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_reverse 0 1044 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor1.CNhs13851.13473-144I8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13473-144I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_tpm_rev MyoblastToMyotubes_Day04D1- bigWig Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_reverse 1 1044 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor1.CNhs13851.13473-144I8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13473-144I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF698WAX prostateEpi CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in epithelial_cell_of_prostate from ENCODE 3 (ENCFF698WAX) 1 1044 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in epithelial_cell_of_prostate from ENCODE 3 (ENCFF698WAX)\ parent encTfChipPk off\ shortLabel prostateEpi CTCF\ subGroups cellType=epithelial_cell_of_prostate factor=CTCF\ track encTfChipPkENCFF698WAX\ wgEncodeHaibTfbsSknshSin3ak20V0416101RawRep2 SKSH Sin3A V101 2 bigWig 0.133128 1445.709961 SK-N-SH Sin3Ak-20 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1044 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Sin3Ak-20 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH Sin3A V101 2\ subGroups view=RawSignal factor=SIN3AK20 cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshSin3ak20V0416101RawRep2\ type bigWig 0.133128 1445.709961\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_ctss_fwd MyoblastToMyotubes_Day04D2+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_forward 0 1045 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14600.13509-145D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13509-145D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_tpm_fwd MyoblastToMyotubes_Day04D2+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_forward 1 1045 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14600.13509-145D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13509-145D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF470PNM proxTublEpi CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in epithelial_cell_of_proximal_tubule from ENCODE 3 (ENCFF470PNM) 1 1045 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in epithelial_cell_of_proximal_tubule from ENCODE 3 (ENCFF470PNM)\ parent encTfChipPk off\ shortLabel proxTublEpi CTCF\ subGroups cellType=epithelial_cell_of_proximal_tubule factor=CTCF\ track encTfChipPkENCFF470PNM\ wgEncodeHaibTfbsSknshTaf1V0416101PkRep1 SKSH TAF1 V101 1 broadPeak SK-N-SH TAF1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1045 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH TAF1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH TAF1 V101 1\ subGroups view=Peaks factor=TAF1 cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshTaf1V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF762DRA erythblst GATA1 1 narrowPeak Transcription Factor ChIP-seq Peaks of GATA1 in erythroblast from ENCODE 3 (ENCFF762DRA) 1 1046 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATA1 in erythroblast from ENCODE 3 (ENCFF762DRA)\ parent encTfChipPk off\ shortLabel erythblst GATA1 1\ subGroups cellType=erythroblast factor=GATA1\ track encTfChipPkENCFF762DRA\ MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_ctss_fwd MyoblastToMyotubes_Day04D2+ bigWig Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_forward 0 1046 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor2.CNhs14572.13482-145A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13482-145A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_tpm_fwd MyoblastToMyotubes_Day04D2+ bigWig Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_forward 1 1046 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor2.CNhs14572.13482-145A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13482-145A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshTaf1V0416101RawRep1 SKSH TAF1 V101 1 bigWig 0.145535 266.838989 SK-N-SH TAF1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1046 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH TAF1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH TAF1 V101 1\ subGroups view=RawSignal factor=TAF1 cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshTaf1V0416101RawRep1\ type bigWig 0.145535 266.838989\ encTfChipPkENCFF957CWW erythblst GATA1 2 narrowPeak Transcription Factor ChIP-seq Peaks of GATA1 in erythroblast from ENCODE 3 (ENCFF957CWW) 1 1047 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATA1 in erythroblast from ENCODE 3 (ENCFF957CWW)\ parent encTfChipPk off\ shortLabel erythblst GATA1 2\ subGroups cellType=erythroblast factor=GATA1\ track encTfChipPkENCFF957CWW\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_ctss_rev MyoblastToMyotubes_Day04D2- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_reverse 0 1047 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14600.13509-145D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13509-145D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_tpm_rev MyoblastToMyotubes_Day04D2- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_reverse 1 1047 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14600.13509-145D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13509-145D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshTaf1V0416101PkRep2 SKSH TAF1 V101 2 broadPeak SK-N-SH TAF1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1047 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH TAF1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH TAF1 V101 2\ subGroups view=Peaks factor=TAF1 cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshTaf1V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF202BAI esphMscMuc CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF202BAI) 1 1048 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF202BAI)\ parent encTfChipPk off\ shortLabel esphMscMuc CTCF 1\ subGroups cellType=esophagus_muscularis_mucosa factor=CTCF\ track encTfChipPkENCFF202BAI\ MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_ctss_rev MyoblastToMyotubes_Day04D2- bigWig Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_reverse 0 1048 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor2.CNhs14572.13482-145A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13482-145A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_tpm_rev MyoblastToMyotubes_Day04D2- bigWig Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_reverse 1 1048 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor2.CNhs14572.13482-145A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13482-145A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshTaf1V0416101RawRep2 SKSH TAF1 V101 2 bigWig 0.165597 202.483002 SK-N-SH TAF1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1048 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH TAF1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH TAF1 V101 2\ subGroups view=RawSignal factor=TAF1 cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshTaf1V0416101RawRep2\ type bigWig 0.165597 202.483002\ encTfChipPkENCFF435EDS esphMscMuc CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF435EDS) 1 1049 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF435EDS)\ parent encTfChipPk off\ shortLabel esphMscMuc CTCF 2\ subGroups cellType=esophagus_muscularis_mucosa factor=CTCF\ track encTfChipPkENCFF435EDS\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_ctss_fwd MyoblastToMyotubes_Day04D3+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_forward 0 1049 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14609.13518-145E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13518-145E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_tpm_fwd MyoblastToMyotubes_Day04D3+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_forward 1 1049 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14609.13518-145E8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13518-145E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshTcf12V0422111PkRep1 SKSH TCF12 V11 1 broadPeak SK-N-SH TCF12 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1049 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH TCF12 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH TCF12 V11 1\ subGroups view=Peaks factor=TCF12 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshTcf12V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF735EHK esphMscMuc CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF735EHK) 1 1050 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF735EHK)\ parent encTfChipPk off\ shortLabel esphMscMuc CTCF 3\ subGroups cellType=esophagus_muscularis_mucosa factor=CTCF\ track encTfChipPkENCFF735EHK\ MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_ctss_fwd MyoblastToMyotubes_Day04D3+ bigWig Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_forward 0 1050 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor3.CNhs14581.13491-145B8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13491-145B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_tpm_fwd MyoblastToMyotubes_Day04D3+ bigWig Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_forward 1 1050 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor3.CNhs14581.13491-145B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13491-145B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshTcf12V0422111RawRep1 SKSH TCF12 V11 1 bigWig 1.000000 11228.000000 SK-N-SH TCF12 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1050 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH TCF12 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH TCF12 V11 1\ subGroups view=RawSignal factor=TCF12 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshTcf12V0422111RawRep1\ type bigWig 1.000000 11228.000000\ encTfChipPkENCFF451VDG esphMscMc EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF451VDG) 1 1051 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF451VDG)\ parent encTfChipPk off\ shortLabel esphMscMc EP300 1\ subGroups cellType=esophagus_muscularis_mucosa factor=EP300\ track encTfChipPkENCFF451VDG\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_ctss_rev MyoblastToMyotubes_Day04D3- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_reverse 0 1051 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14609.13518-145E8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13518-145E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_tpm_rev MyoblastToMyotubes_Day04D3- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_reverse 1 1051 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14609.13518-145E8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13518-145E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshTcf12V0422111PkRep2 SKSH TCF12 V11 2 broadPeak SK-N-SH TCF12 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1051 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH TCF12 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH TCF12 V11 2\ subGroups view=Peaks factor=TCF12 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshTcf12V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF207RWS esphMscMc EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF207RWS) 1 1052 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF207RWS)\ parent encTfChipPk off\ shortLabel esphMscMc EP300 2\ subGroups cellType=esophagus_muscularis_mucosa factor=EP300\ track encTfChipPkENCFF207RWS\ MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_ctss_rev MyoblastToMyotubes_Day04D3- bigWig Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_reverse 0 1052 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor3.CNhs14581.13491-145B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13491-145B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_tpm_rev MyoblastToMyotubes_Day04D3- bigWig Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_reverse 1 1052 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor3.CNhs14581.13491-145B8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13491-145B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshTcf12V0422111RawRep2 SKSH TCF12 V11 2 bigWig 1.000000 2497.000000 SK-N-SH TCF12 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1052 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH TCF12 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH TCF12 V11 2\ subGroups view=RawSignal factor=TCF12 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshTcf12V0422111RawRep2\ type bigWig 1.000000 2497.000000\ encTfChipPkENCFF469TTI esphMscMc EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF469TTI) 1 1053 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF469TTI)\ parent encTfChipPk off\ shortLabel esphMscMc EP300 3\ subGroups cellType=esophagus_muscularis_mucosa factor=EP300\ track encTfChipPkENCFF469TTI\ MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_ctss_fwd MyoblastToMyotubes_Day06D1+ bigWig Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_forward 0 1053 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor1.CNhs13852.13474-144I9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13474-144I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_tpm_fwd MyoblastToMyotubes_Day06D1+ bigWig Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_forward 1 1053 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor1.CNhs13852.13474-144I9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13474-144I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshTead4sc101184V0422111PkRep1 SKSH TEAD4 V11 1 broadPeak SK-N-SH TEAD4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1053 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH TEAD4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH TEAD4 V11 1\ subGroups view=Peaks factor=TEAD4SC101184 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshTead4sc101184V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF614IMK esphMscMc EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF614IMK) 1 1054 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF614IMK)\ parent encTfChipPk off\ shortLabel esphMscMc EP300 4\ subGroups cellType=esophagus_muscularis_mucosa factor=EP300\ track encTfChipPkENCFF614IMK\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_ctss_fwd MyoblastToMyotubes_Day06D1+ bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_forward 0 1054 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14591.13501-145C9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13501-145C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_tpm_fwd MyoblastToMyotubes_Day06D1+ bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_forward 1 1054 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14591.13501-145C9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13501-145C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshTead4sc101184V0422111RawRep1 SKSH TEAD4 V11 1 bigWig 1.000000 1746.000000 SK-N-SH TEAD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1054 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH TEAD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH TEAD4 V11 1\ subGroups view=RawSignal factor=TEAD4SC101184 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshTead4sc101184V0422111RawRep1\ type bigWig 1.000000 1746.000000\ encTfChipPkENCFF737IOU esophMscMc POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF737IOU) 1 1055 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF737IOU)\ parent encTfChipPk off\ shortLabel esophMscMc POLR2A\ subGroups cellType=esophagus_muscularis_mucosa factor=POLR2A\ track encTfChipPkENCFF737IOU\ MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_ctss_rev MyoblastToMyotubes_Day06D1- bigWig Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_reverse 0 1055 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor1.CNhs13852.13474-144I9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13474-144I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_tpm_rev MyoblastToMyotubes_Day06D1- bigWig Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_reverse 1 1055 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor1.CNhs13852.13474-144I9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13474-144I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshTead4sc101184V0422111PkRep2 SKSH TEAD4 V11 2 broadPeak SK-N-SH TEAD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1055 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH TEAD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH TEAD4 V11 2\ subGroups view=Peaks factor=TEAD4SC101184 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshTead4sc101184V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF470NNW esphSquEpi CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF470NNW) 1 1056 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF470NNW)\ parent encTfChipPk off\ shortLabel esphSquEpi CTCF 1\ subGroups cellType=esophagus_squamous_epithelium factor=CTCF\ track encTfChipPkENCFF470NNW\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_ctss_rev MyoblastToMyotubes_Day06D1- bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_reverse 0 1056 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14591.13501-145C9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13501-145C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_tpm_rev MyoblastToMyotubes_Day06D1- bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_reverse 1 1056 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14591.13501-145C9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13501-145C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshTead4sc101184V0422111RawRep2 SKSH TEAD4 V11 2 bigWig 1.000000 3277.000000 SK-N-SH TEAD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1056 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH TEAD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH TEAD4 V11 2\ subGroups view=RawSignal factor=TEAD4SC101184 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshTead4sc101184V0422111RawRep2\ type bigWig 1.000000 3277.000000\ encTfChipPkENCFF369LXG esphSquEpi CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF369LXG) 1 1057 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF369LXG)\ parent encTfChipPk off\ shortLabel esphSquEpi CTCF 2\ subGroups cellType=esophagus_squamous_epithelium factor=CTCF\ track encTfChipPkENCFF369LXG\ MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_ctss_fwd MyoblastToMyotubes_Day06D2+ bigWig Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_forward 0 1057 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor2.CNhs14573.13483-145A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13483-145A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_tpm_fwd MyoblastToMyotubes_Day06D2+ bigWig Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_forward 1 1057 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor2.CNhs14573.13483-145A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13483-145A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshUsf1V0422111PkRep1 SKSH USF1 V11 1 broadPeak SK-N-SH USF-1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1057 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH USF-1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH USF1 V11 1\ subGroups view=Peaks factor=USF1 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshUsf1V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF587LBC esphSquEpi CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF587LBC) 1 1058 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF587LBC)\ parent encTfChipPk off\ shortLabel esphSquEpi CTCF 3\ subGroups cellType=esophagus_squamous_epithelium factor=CTCF\ track encTfChipPkENCFF587LBC\ MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_ctss_rev MyoblastToMyotubes_Day06D2- bigWig Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_reverse 0 1058 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor2.CNhs14573.13483-145A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13483-145A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_tpm_rev MyoblastToMyotubes_Day06D2- bigWig Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_reverse 1 1058 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor2.CNhs14573.13483-145A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13483-145A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshUsf1V0422111RawRep1 SKSH USF1 V11 1 bigWig 1.000000 3581.000000 SK-N-SH USF-1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1058 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH USF-1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH USF1 V11 1\ subGroups view=RawSignal factor=USF1 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshUsf1V0422111RawRep1\ type bigWig 1.000000 3581.000000\ encTfChipPkENCFF761JIU esphSquEpi CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF761JIU) 1 1059 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF761JIU)\ parent encTfChipPk off\ shortLabel esphSquEpi CTCF 4\ subGroups cellType=esophagus_squamous_epithelium factor=CTCF\ track encTfChipPkENCFF761JIU\ MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_ctss_fwd MyoblastToMyotubes_Day06D3+ bigWig Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_forward 0 1059 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor3.CNhs14582.13492-145B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13492-145B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_tpm_fwd MyoblastToMyotubes_Day06D3+ bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_forward 1 1059 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14610.13519-145E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13519-145E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshUsf1V0422111PkRep2 SKSH USF1 V11 2 broadPeak SK-N-SH USF-1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1059 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH USF-1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH USF1 V11 2\ subGroups view=Peaks factor=USF1 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshUsf1V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF538YID esphSqEp POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF538YID) 1 1060 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF538YID)\ parent encTfChipPk off\ shortLabel esphSqEp POLR2A 1\ subGroups cellType=esophagus_squamous_epithelium factor=POLR2A\ track encTfChipPkENCFF538YID\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_ctss_fwd MyoblastToMyotubes_Day06D3+ bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_forward 0 1060 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14610.13519-145E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13519-145E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_tpm_fwd MyoblastToMyotubes_Day06D3+ bigWig Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_forward 1 1060 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor3.CNhs14582.13492-145B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13492-145B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshUsf1V0422111RawRep2 SKSH USF1 V11 2 bigWig 1.000000 2921.000000 SK-N-SH USF-1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1060 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH USF-1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH USF1 V11 2\ subGroups view=RawSignal factor=USF1 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshUsf1V0422111RawRep2\ type bigWig 1.000000 2921.000000\ encTfChipPkENCFF715AKU esphSqEp POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF715AKU) 1 1061 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF715AKU)\ parent encTfChipPk off\ shortLabel esphSqEp POLR2A 2\ subGroups cellType=esophagus_squamous_epithelium factor=POLR2A\ track encTfChipPkENCFF715AKU\ MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_ctss_rev MyoblastToMyotubes_Day06D3- bigWig Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_reverse 0 1061 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor3.CNhs14582.13492-145B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13492-145B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_tpm_rev MyoblastToMyotubes_Day06D3- bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_reverse 1 1061 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14610.13519-145E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13519-145E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshYy1sc281V0422111PkRep1 SKSH YY1 V11 1 broadPeak SK-N-SH YY1 281 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1061 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH YY1 281 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH YY1 V11 1\ subGroups view=Peaks factor=YY1SC281 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshYy1sc281V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF458RGL esphSqEp POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF458RGL) 1 1062 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF458RGL)\ parent encTfChipPk off\ shortLabel esphSqEp POLR2A 3\ subGroups cellType=esophagus_squamous_epithelium factor=POLR2A\ track encTfChipPkENCFF458RGL\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_ctss_rev MyoblastToMyotubes_Day06D3- bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_reverse 0 1062 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14610.13519-145E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13519-145E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_tpm_rev MyoblastToMyotubes_Day06D3- bigWig Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_reverse 1 1062 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor3.CNhs14582.13492-145B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13492-145B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshYy1sc281V0422111RawRep1 SKSH YY1 V11 1 bigWig 1.000000 5816.000000 SK-N-SH YY1 281 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1062 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH YY1 281 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH YY1 V11 1\ subGroups view=RawSignal factor=YY1SC281 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshYy1sc281V0422111RawRep1\ type bigWig 1.000000 5816.000000\ encTfChipPkENCFF476MXK esphSqEp POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF476MXK) 1 1063 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF476MXK)\ parent encTfChipPk off\ shortLabel esphSqEp POLR2A 4\ subGroups cellType=esophagus_squamous_epithelium factor=POLR2A\ track encTfChipPkENCFF476MXK\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_ctss_fwd MyoblastToMyotubes_Day08D1+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_forward 0 1063 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14592.13502-145D1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13502-145D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_tpm_fwd MyoblastToMyotubes_Day08D1+ bigWig Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_forward 1 1063 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor1.CNhs13853.13475-145A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13475-145A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshYy1sc281V0422111PkRep2 SKSH YY1 V11 2 broadPeak SK-N-SH YY1 281 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1063 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH YY1 281 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH YY1 V11 2\ subGroups view=Peaks factor=YY1SC281 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshYy1sc281V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF570FLB lungFibro CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_lung from ENCODE 3 (ENCFF570FLB) 1 1064 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_lung from ENCODE 3 (ENCFF570FLB)\ parent encTfChipPk off\ shortLabel lungFibro CTCF 1\ subGroups cellType=fibroblast_of_lung factor=CTCF\ track encTfChipPkENCFF570FLB\ MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_ctss_fwd MyoblastToMyotubes_Day08D1+ bigWig Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_forward 0 1064 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor1.CNhs13853.13475-145A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13475-145A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_tpm_fwd MyoblastToMyotubes_Day08D1+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_forward 1 1064 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14592.13502-145D1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13502-145D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshYy1sc281V0422111RawRep2 SKSH YY1 V11 2 bigWig 1.000000 3130.000000 SK-N-SH YY1 281 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1064 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH YY1 281 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH YY1 V11 2\ subGroups view=RawSignal factor=YY1SC281 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshYy1sc281V0422111RawRep2\ type bigWig 1.000000 3130.000000\ encTfChipPkENCFF148VQH lungFibro CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_lung from ENCODE 3 (ENCFF148VQH) 1 1065 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_lung from ENCODE 3 (ENCFF148VQH)\ parent encTfChipPk off\ shortLabel lungFibro CTCF 2\ subGroups cellType=fibroblast_of_lung factor=CTCF\ track encTfChipPkENCFF148VQH\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_ctss_rev MyoblastToMyotubes_Day08D1- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_reverse 0 1065 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14592.13502-145D1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13502-145D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_tpm_rev MyoblastToMyotubes_Day08D1- bigWig Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_reverse 1 1065 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor1.CNhs13853.13475-145A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13475-145A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshZbtb33V0422111PkRep1 SKSH ZBTB33 V11 1 broadPeak SK-N-SH ZBTB33 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1065 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH ZBTB33 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH ZBTB33 V11 1\ subGroups view=Peaks factor=ZBTB33 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshZbtb33V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF438XHB mamryGlFibro CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_mammary_gland from ENCODE 3 (ENCFF438XHB) 1 1066 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_mammary_gland from ENCODE 3 (ENCFF438XHB)\ parent encTfChipPk off\ shortLabel mamryGlFibro CTCF\ subGroups cellType=fibroblast_of_mammary_gland factor=CTCF\ track encTfChipPkENCFF438XHB\ MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_ctss_rev MyoblastToMyotubes_Day08D1- bigWig Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_reverse 0 1066 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor1.CNhs13853.13475-145A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13475-145A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_tpm_rev MyoblastToMyotubes_Day08D1- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_reverse 1 1066 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14592.13502-145D1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13502-145D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshZbtb33V0422111RawRep1 SKSH ZBTB33 V11 1 bigWig 1.000000 2384.000000 SK-N-SH ZBTB33 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1066 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH ZBTB33 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH ZBTB33 V11 1\ subGroups view=RawSignal factor=ZBTB33 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshZbtb33V0422111RawRep1\ type bigWig 1.000000 2384.000000\ MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_ctss_fwd MyoblastToMyotubes_Day08D2+ bigWig Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_forward 0 1067 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor2.CNhs14574.13484-145B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13484-145B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_tpm_fwd MyoblastToMyotubes_Day08D2+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_forward 1 1067 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14602.13511-145E1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13511-145E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF933VBD plArtryFibro CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_pulmonary_artery from ENCODE 3 (ENCFF933VBD) 1 1067 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_pulmonary_artery from ENCODE 3 (ENCFF933VBD)\ parent encTfChipPk off\ shortLabel plArtryFibro CTCF\ subGroups cellType=fibroblast_of_pulmonary_artery factor=CTCF\ track encTfChipPkENCFF933VBD\ wgEncodeHaibTfbsSknshZbtb33V0422111PkRep2 SKSH ZBTB33 V11 2 broadPeak SK-N-SH ZBTB33 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1067 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH ZBTB33 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKSH ZBTB33 V11 2\ subGroups view=Peaks factor=ZBTB33 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshZbtb33V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF859PRV aortaAdFibro CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_the_aortic_adventitia from ENCODE 3 (ENCFF859PRV) 1 1068 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_the_aortic_adventitia from ENCODE 3 (ENCFF859PRV)\ parent encTfChipPk off\ shortLabel aortaAdFibro CTCF\ subGroups cellType=fibroblast_of_the_aortic_adventitia factor=CTCF\ track encTfChipPkENCFF859PRV\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_ctss_fwd MyoblastToMyotubes_Day08D2+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_forward 0 1068 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14602.13511-145E1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13511-145E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_tpm_fwd MyoblastToMyotubes_Day08D2+ bigWig Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_forward 1 1068 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor2.CNhs14574.13484-145B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13484-145B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshZbtb33V0422111RawRep2 SKSH ZBTB33 V11 2 bigWig 1.000000 1457.000000 SK-N-SH ZBTB33 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1068 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH ZBTB33 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH ZBTB33 V11 2\ subGroups view=RawSignal factor=ZBTB33 cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshZbtb33V0422111RawRep2\ type bigWig 1.000000 1457.000000\ MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_ctss_rev MyoblastToMyotubes_Day08D2- bigWig Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_reverse 0 1069 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor2.CNhs14574.13484-145B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13484-145B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_tpm_rev MyoblastToMyotubes_Day08D2- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_reverse 1 1069 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14602.13511-145E1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13511-145E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshRxlchPcr2xRawRep1 SKSH RvXL PCR2 1 bigWig 0.254775 82.865700 SK-N-SH Control PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1069 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Control PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH RvXL PCR2 1\ subGroups view=RawSignal factor=zRXLCH cellType=t2SKNSH protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshRxlchPcr2xRawRep1\ type bigWig 0.254775 82.865700\ encTfChipPkENCFF738CXX vlMesenFibro CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_villous_mesenchyme from ENCODE 3 (ENCFF738CXX) 1 1069 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_villous_mesenchyme from ENCODE 3 (ENCFF738CXX)\ parent encTfChipPk off\ shortLabel vlMesenFibro CTCF\ subGroups cellType=fibroblast_of_villous_mesenchyme factor=CTCF\ track encTfChipPkENCFF738CXX\ encTfChipPkENCFF337WIE frsknFibro CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in foreskin_fibroblast from ENCODE 3 (ENCFF337WIE) 1 1070 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in foreskin_fibroblast from ENCODE 3 (ENCFF337WIE)\ parent encTfChipPk off\ shortLabel frsknFibro CTCF 1\ subGroups cellType=foreskin_fibroblast factor=CTCF\ track encTfChipPkENCFF337WIE\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_ctss_rev MyoblastToMyotubes_Day08D2- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_reverse 0 1070 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14602.13511-145E1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13511-145E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_tpm_rev MyoblastToMyotubes_Day08D2- bigWig Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_reverse 1 1070 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor2.CNhs14574.13484-145B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13484-145B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshRxlchPcr2xRawRep2 SKSH RvXL PCR2 2 bigWig 0.162516 577.216003 SK-N-SH Control PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1070 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Control PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH RvXL PCR2 2\ subGroups view=RawSignal factor=zRXLCH cellType=t2SKNSH protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshRxlchPcr2xRawRep2\ type bigWig 0.162516 577.216003\ encTfChipPkENCFF652MLT frsknFibro CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in foreskin_fibroblast from ENCODE 3 (ENCFF652MLT) 1 1071 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in foreskin_fibroblast from ENCODE 3 (ENCFF652MLT)\ parent encTfChipPk off\ shortLabel frsknFibro CTCF 2\ subGroups cellType=foreskin_fibroblast factor=CTCF\ track encTfChipPkENCFF652MLT\ MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_ctss_fwd MyoblastToMyotubes_Day08D3+ bigWig Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_forward 0 1071 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor3.CNhs14583.13493-145C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13493-145C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_tpm_fwd MyoblastToMyotubes_Day08D3+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_forward 1 1071 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14611.13520-145F1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13520-145F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshRxlchV0416101RawRep1 SKSH RvXL V101 1 bigWig 0.112652 219.136993 SK-N-SH Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1071 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH RvXL V101 1\ subGroups view=RawSignal factor=zRXLCH cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshRxlchV0416101RawRep1\ type bigWig 0.112652 219.136993\ encTfChipPkENCFF250ZAH frskinKrtn CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF250ZAH) 1 1072 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF250ZAH)\ parent encTfChipPk off\ shortLabel frskinKrtn CTCF 1\ subGroups cellType=foreskin_keratinocyte factor=CTCF\ track encTfChipPkENCFF250ZAH\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_ctss_fwd MyoblastToMyotubes_Day08D3+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_forward 0 1072 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14611.13520-145F1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13520-145F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_tpm_fwd MyoblastToMyotubes_Day08D3+ bigWig Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_forward 1 1072 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor3.CNhs14583.13493-145C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13493-145C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshRxlchV0416101RawRep2 SKSH RvXL V101 2 bigWig 0.122278 190.447998 SK-N-SH Control v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1072 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Control v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH RvXL V101 2\ subGroups view=RawSignal factor=zRXLCH cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshRxlchV0416101RawRep2\ type bigWig 0.122278 190.447998\ encTfChipPkENCFF633IHZ frskinKrtn CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF633IHZ) 1 1073 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF633IHZ)\ parent encTfChipPk off\ shortLabel frskinKrtn CTCF 2\ subGroups cellType=foreskin_keratinocyte factor=CTCF\ track encTfChipPkENCFF633IHZ\ MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_ctss_rev MyoblastToMyotubes_Day08D3- bigWig Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_reverse 0 1073 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor3.CNhs14583.13493-145C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13493-145C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_tpm_rev MyoblastToMyotubes_Day08D3- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_reverse 1 1073 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14611.13520-145F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13520-145F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshRxlchV0416101RawRep3 SKSH RvXL V101 3 bigWig 0.128654 169.501999 SK-N-SH Control v041610.1 ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB 2 1073 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Control v041610.1 ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH RvXL V101 3\ subGroups view=RawSignal factor=zRXLCH cellType=t2SKNSH protocol=V0416101 treatment=NONE rep=rep3\ track wgEncodeHaibTfbsSknshRxlchV0416101RawRep3\ type bigWig 0.128654 169.501999\ encTfChipPkENCFF459YEI frskinKrtn CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF459YEI) 1 1074 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF459YEI)\ parent encTfChipPk off\ shortLabel frskinKrtn CTCF 3\ subGroups cellType=foreskin_keratinocyte factor=CTCF\ track encTfChipPkENCFF459YEI\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_ctss_rev MyoblastToMyotubes_Day08D3- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_reverse 0 1074 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14611.13520-145F1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13520-145F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_tpm_rev MyoblastToMyotubes_Day08D3- bigWig Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_reverse 1 1074 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor3.CNhs14583.13493-145C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13493-145C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshRxlchV0422111RawRep1 SKSH RvXL V11 1 bigWig 1.000000 4849.000000 SK-N-SH Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1074 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH RvXL V11 1\ subGroups view=RawSignal factor=zRXLCH cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshRxlchV0422111RawRep1\ type bigWig 1.000000 4849.000000\ encTfChipPkENCFF396NYG gastrocMed CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF396NYG) 1 1075 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF396NYG)\ parent encTfChipPk off\ shortLabel gastrocMed CTCF 1\ subGroups cellType=gastrocnemius_medialis factor=CTCF\ track encTfChipPkENCFF396NYG\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_ctss_fwd MyoblastToMyotubes_Day10D1+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_forward 0 1075 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14594.13503-145D2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13503-145D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_tpm_fwd MyoblastToMyotubes_Day10D1+ bigWig Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_forward 1 1075 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor1.CNhs13854.13476-145A2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13476-145A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshRxlchV0422111RawRep2 SKSH RvXL V11 2 bigWig 1.000000 2809.000000 SK-N-SH Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1075 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH RvXL V11 2\ subGroups view=RawSignal factor=zRXLCH cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshRxlchV0422111RawRep2\ type bigWig 1.000000 2809.000000\ encTfChipPkENCFF101PDP gastrocMed CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF101PDP) 1 1076 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF101PDP)\ parent encTfChipPk off\ shortLabel gastrocMed CTCF 2\ subGroups cellType=gastrocnemius_medialis factor=CTCF\ track encTfChipPkENCFF101PDP\ MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_ctss_fwd MyoblastToMyotubes_Day10D1+ bigWig Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_forward 0 1076 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor1.CNhs13854.13476-145A2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13476-145A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_tpm_fwd MyoblastToMyotubes_Day10D1+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_forward 1 1076 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14594.13503-145D2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13503-145D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshRxlchV0422111RawRep3 SKSH RvXL V11 3 bigWig 1.000000 2506.000000 SK-N-SH Control v042211.1 ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB 2 1076 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Control v042211.1 ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH RvXL V11 3\ subGroups view=RawSignal factor=zRXLCH cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep3\ track wgEncodeHaibTfbsSknshRxlchV0422111RawRep3\ type bigWig 1.000000 2506.000000\ encTfChipPkENCFF985OZU gastrocMed CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF985OZU) 1 1077 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF985OZU)\ parent encTfChipPk off\ shortLabel gastrocMed CTCF 3\ subGroups cellType=gastrocnemius_medialis factor=CTCF\ track encTfChipPkENCFF985OZU\ MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_ctss_rev MyoblastToMyotubes_Day10D1- bigWig Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_reverse 0 1077 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor1.CNhs13854.13476-145A2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13476-145A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_tpm_rev MyoblastToMyotubes_Day10D1- bigWig Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_reverse 1 1077 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor1.CNhs13854.13476-145A2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13476-145A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshRxlchV0422111RawRep4 SKSH RvXL V11 4 bigWig 1.000000 3718.000000 SK-N-SH Control v042211.1 ChIP-seq Raw Signal Rep 4 from ENCODE/HAIB 2 1077 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH Control v042211.1 ChIP-seq Raw Signal Rep 4 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKSH RvXL V11 4\ subGroups view=RawSignal factor=zRXLCH cellType=t2SKNSH protocol=V0422111 treatment=NONE rep=rep4\ track wgEncodeHaibTfbsSknshRxlchV0422111RawRep4\ type bigWig 1.000000 3718.000000\ wgEncodeHaibTfbsEcc1Cebpbsc150V0422111PkRep1 ECC1 CEBPB V11 1 broadPeak ECC-1 CEBPB v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1078 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 CEBPB v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 CEBPB V11 1\ subGroups view=Peaks factor=CEBPB cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Cebpbsc150V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF358ZLQ gstrcMed POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in gastrocnemius_medialis from ENCODE 3 (ENCFF358ZLQ) 1 1078 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in gastrocnemius_medialis from ENCODE 3 (ENCFF358ZLQ)\ parent encTfChipPk off\ shortLabel gstrcMed POLR2A 1\ subGroups cellType=gastrocnemius_medialis factor=POLR2A\ track encTfChipPkENCFF358ZLQ\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_ctss_rev MyoblastToMyotubes_Day10D1- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_reverse 0 1078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14594.13503-145D2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13503-145D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_tpm_rev MyoblastToMyotubes_Day10D1- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_reverse 1 1078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14594.13503-145D2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13503-145D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Cebpbsc150V0422111RawRep1 ECC1 CEBPB V11 1 bigWig 1.000000 1671.000000 ECC-1 CEBPB v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1079 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 CEBPB v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 CEBPB V11 1\ subGroups view=RawSignal factor=CEBPB cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Cebpbsc150V0422111RawRep1\ type bigWig 1.000000 1671.000000\ encTfChipPkENCFF252FBJ gstrcMed POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in gastrocnemius_medialis from ENCODE 3 (ENCFF252FBJ) 1 1079 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in gastrocnemius_medialis from ENCODE 3 (ENCFF252FBJ)\ parent encTfChipPk off\ shortLabel gstrcMed POLR2A 2\ subGroups cellType=gastrocnemius_medialis factor=POLR2A\ track encTfChipPkENCFF252FBJ\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_ctss_fwd MyoblastToMyotubes_Day10D2+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_forward 0 1079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14603.13512-145E2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13512-145E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_tpm_fwd MyoblastToMyotubes_Day10D2+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_forward 1 1079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14603.13512-145E2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13512-145E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Cebpbsc150V0422111PkRep2 ECC1 CEBPB V11 2 broadPeak ECC-1 CEBPB v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1080 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 CEBPB v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 CEBPB V11 2\ subGroups view=Peaks factor=CEBPB cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Cebpbsc150V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF045AYR gstEsphSph CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in gastroesophageal_sphincter from ENCODE 3 (ENCFF045AYR) 1 1080 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in gastroesophageal_sphincter from ENCODE 3 (ENCFF045AYR)\ parent encTfChipPk off\ shortLabel gstEsphSph CTCF 1\ subGroups cellType=gastroesophageal_sphincter factor=CTCF\ track encTfChipPkENCFF045AYR\ MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_ctss_fwd MyoblastToMyotubes_Day10D2+ bigWig Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_forward 0 1080 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor2.CNhs14575.13485-145B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13485-145B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_tpm_fwd MyoblastToMyotubes_Day10D2+ bigWig Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_forward 1 1080 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor2.CNhs14575.13485-145B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13485-145B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Cebpbsc150V0422111RawRep2 ECC1 CEBPB V11 2 bigWig 1.000000 1895.000000 ECC-1 CEBPB v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1081 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 CEBPB v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 CEBPB V11 2\ subGroups view=RawSignal factor=CEBPB cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Cebpbsc150V0422111RawRep2\ type bigWig 1.000000 1895.000000\ encTfChipPkENCFF603KUP gstEsphSph CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in gastroesophageal_sphincter from ENCODE 3 (ENCFF603KUP) 1 1081 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in gastroesophageal_sphincter from ENCODE 3 (ENCFF603KUP)\ parent encTfChipPk off\ shortLabel gstEsphSph CTCF 2\ subGroups cellType=gastroesophageal_sphincter factor=CTCF\ track encTfChipPkENCFF603KUP\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_ctss_rev MyoblastToMyotubes_Day10D2- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_reverse 0 1081 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14603.13512-145E2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13512-145E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_tpm_rev MyoblastToMyotubes_Day10D2- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_reverse 1 1081 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14603.13512-145E2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13512-145E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Creb1sc240V0422111PkRep1 ECC1 CREB1 V11 1 broadPeak ECC-1 CREB1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1082 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 CREB1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 CREB1 V11 1\ subGroups view=Peaks factor=CREB1SC240 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Creb1sc240V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF047QFE gsEsphSph EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF047QFE) 1 1082 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF047QFE)\ parent encTfChipPk off\ shortLabel gsEsphSph EP300 1\ subGroups cellType=gastroesophageal_sphincter factor=EP300\ track encTfChipPkENCFF047QFE\ MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_ctss_rev MyoblastToMyotubes_Day10D2- bigWig Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_reverse 0 1082 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor2.CNhs14575.13485-145B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13485-145B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_tpm_rev MyoblastToMyotubes_Day10D2- bigWig Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_reverse 1 1082 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor2.CNhs14575.13485-145B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13485-145B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Creb1sc240V0422111RawRep1 ECC1 CREB1 V11 1 bigWig 1.000000 1054.000000 ECC-1 CREB1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1083 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 CREB1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 CREB1 V11 1\ subGroups view=RawSignal factor=CREB1SC240 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Creb1sc240V0422111RawRep1\ type bigWig 1.000000 1054.000000\ encTfChipPkENCFF150ABP gsEsphSph EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF150ABP) 1 1083 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF150ABP)\ parent encTfChipPk off\ shortLabel gsEsphSph EP300 2\ subGroups cellType=gastroesophageal_sphincter factor=EP300\ track encTfChipPkENCFF150ABP\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_ctss_fwd MyoblastToMyotubes_Day10D3+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_forward 0 1083 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14612.13521-145F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13521-145F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_tpm_fwd MyoblastToMyotubes_Day10D3+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_forward 1 1083 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14612.13521-145F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13521-145F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Creb1sc240V0422111PkRep2 ECC1 CREB1 V11 2 broadPeak ECC-1 CREB1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1084 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 CREB1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 CREB1 V11 2\ subGroups view=Peaks factor=CREB1SC240 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Creb1sc240V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF597JRR gsEsphSph EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF597JRR) 1 1084 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF597JRR)\ parent encTfChipPk off\ shortLabel gsEsphSph EP300 3\ subGroups cellType=gastroesophageal_sphincter factor=EP300\ track encTfChipPkENCFF597JRR\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_ctss_rev MyoblastToMyotubes_Day10D3- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_reverse 0 1084 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14612.13521-145F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13521-145F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_tpm_rev MyoblastToMyotubes_Day10D3- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_reverse 1 1084 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14612.13521-145F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13521-145F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Creb1sc240V0422111RawRep2 ECC1 CREB1 V11 2 bigWig 1.000000 1721.000000 ECC-1 CREB1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1085 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 CREB1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 CREB1 V11 2\ subGroups view=RawSignal factor=CREB1SC240 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Creb1sc240V0422111RawRep2\ type bigWig 1.000000 1721.000000\ encTfChipPkENCFF532PJX gEsphSph POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF532PJX) 1 1085 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF532PJX)\ parent encTfChipPk off\ shortLabel gEsphSph POLR2A 1\ subGroups cellType=gastroesophageal_sphincter factor=POLR2A\ track encTfChipPkENCFF532PJX\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_ctss_fwd MyoblastToMyotubes_Day12D1+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_forward 0 1085 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14595.13504-145D3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13504-145D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_tpm_fwd MyoblastToMyotubes_Day12D1+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_forward 1 1085 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14595.13504-145D3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13504-145D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1CtcfcV0416102Dm002p1hPkRep1 ECC1 CTCF DMSO 1 broadPeak ECC-1 CTCF 5916 DMSO v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1086 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 CTCF 5916 DMSO v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 CTCF DMSO 1\ subGroups view=Peaks factor=CTCFSC5916 cellType=t3ECC1 protocol=V0416102 treatment=DM002P1H rep=rep1\ track wgEncodeHaibTfbsEcc1CtcfcV0416102Dm002p1hPkRep1\ type broadPeak\ encTfChipPkENCFF956QVQ gEsphSph POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF956QVQ) 1 1086 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF956QVQ)\ parent encTfChipPk off\ shortLabel gEsphSph POLR2A 2\ subGroups cellType=gastroesophageal_sphincter factor=POLR2A\ track encTfChipPkENCFF956QVQ\ MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_ctss_fwd MyoblastToMyotubes_Day12D1+ bigWig Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_forward 0 1086 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor1.CNhs14566.13477-145A3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13477-145A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_tpm_fwd MyoblastToMyotubes_Day12D1+ bigWig Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_forward 1 1086 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor1.CNhs14566.13477-145A3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13477-145A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1CtcfcV0416102Dm002p1hRawRep1 ECC1 CTCF DMSO 1 bigWig 0.243800 172.488998 ECC-1 CTCF 5916 DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1087 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 CTCF 5916 DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 CTCF DMSO 1\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t3ECC1 protocol=V0416102 treatment=DM002P1H rep=rep1\ track wgEncodeHaibTfbsEcc1CtcfcV0416102Dm002p1hRawRep1\ type bigWig 0.243800 172.488998\ encTfChipPkENCFF174FQT gEsphSph POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF174FQT) 1 1087 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF174FQT)\ parent encTfChipPk off\ shortLabel gEsphSph POLR2A 3\ subGroups cellType=gastroesophageal_sphincter factor=POLR2A\ track encTfChipPkENCFF174FQT\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_ctss_rev MyoblastToMyotubes_Day12D1- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_reverse 0 1087 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14595.13504-145D3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13504-145D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_tpm_rev MyoblastToMyotubes_Day12D1- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_reverse 1 1087 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14595.13504-145D3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13504-145D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1CtcfcV0416102Dm002p1hPkRep2 ECC1 CTCF DMSO 2 broadPeak ECC-1 CTCF 5916 DMSO v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1088 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 CTCF 5916 DMSO v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 CTCF DMSO 2\ subGroups view=Peaks factor=CTCFSC5916 cellType=t3ECC1 protocol=V0416102 treatment=DM002P1H rep=rep2\ track wgEncodeHaibTfbsEcc1CtcfcV0416102Dm002p1hPkRep2\ type broadPeak\ encTfChipPkENCFF240UFV heartLftVent CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in heart_left_ventricle from ENCODE 3 (ENCFF240UFV) 1 1088 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in heart_left_ventricle from ENCODE 3 (ENCFF240UFV)\ parent encTfChipPk off\ shortLabel heartLftVent CTCF\ subGroups cellType=heart_left_ventricle factor=CTCF\ track encTfChipPkENCFF240UFV\ MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_ctss_rev MyoblastToMyotubes_Day12D1- bigWig Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_reverse 0 1088 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor1.CNhs14566.13477-145A3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13477-145A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_tpm_rev MyoblastToMyotubes_Day12D1- bigWig Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_reverse 1 1088 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor1.CNhs14566.13477-145A3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13477-145A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1CtcfcV0416102Dm002p1hRawRep2 ECC1 CTCF DMSO 2 bigWig 0.148493 185.653000 ECC-1 CTCF 5916 DMSO v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1089 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 CTCF 5916 DMSO v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 CTCF DMSO 2\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t3ECC1 protocol=V0416102 treatment=DM002P1H rep=rep2\ track wgEncodeHaibTfbsEcc1CtcfcV0416102Dm002p1hRawRep2\ type bigWig 0.148493 185.653000\ encTfChipPkENCFF596FFJ hrtLfVnt POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in heart_left_ventricle from ENCODE 3 (ENCFF596FFJ) 1 1089 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in heart_left_ventricle from ENCODE 3 (ENCFF596FFJ)\ parent encTfChipPk off\ shortLabel hrtLfVnt POLR2A 1\ subGroups cellType=heart_left_ventricle factor=POLR2A\ track encTfChipPkENCFF596FFJ\ MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_ctss_fwd MyoblastToMyotubes_Day12D2+ bigWig Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_forward 0 1089 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor2.CNhs14576.13486-145B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13486-145B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_tpm_fwd MyoblastToMyotubes_Day12D2+ bigWig Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_forward 1 1089 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor2.CNhs14576.13486-145B3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13486-145B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Egr1V0422111PkRep1 ECC1 Egr-1 V11 1 broadPeak ECC-1 Egr-1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1090 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 Egr-1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 Egr-1 V11 1\ subGroups view=Peaks factor=EGR1 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Egr1V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF813MTO hrtLfVnt POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in heart_left_ventricle from ENCODE 3 (ENCFF813MTO) 1 1090 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in heart_left_ventricle from ENCODE 3 (ENCFF813MTO)\ parent encTfChipPk off\ shortLabel hrtLfVnt POLR2A 2\ subGroups cellType=heart_left_ventricle factor=POLR2A\ track encTfChipPkENCFF813MTO\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_ctss_fwd MyoblastToMyotubes_Day12D2+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_forward 0 1090 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14604.13513-145E3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13513-145E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_tpm_fwd MyoblastToMyotubes_Day12D2+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_forward 1 1090 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14604.13513-145E3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13513-145E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Egr1V0422111RawRep1 ECC1 Egr-1 V11 1 bigWig 1.000000 1948.000000 ECC-1 Egr-1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1091 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 Egr-1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 Egr-1 V11 1\ subGroups view=RawSignal factor=EGR1 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Egr1V0422111RawRep1\ type bigWig 1.000000 1948.000000\ encTfChipPkENCFF776XRJ hepatocyte CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in hepatocyte from ENCODE 3 (ENCFF776XRJ) 1 1091 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in hepatocyte from ENCODE 3 (ENCFF776XRJ)\ parent encTfChipPk off\ shortLabel hepatocyte CTCF\ subGroups cellType=hepatocyte factor=CTCF\ track encTfChipPkENCFF776XRJ\ MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_ctss_rev MyoblastToMyotubes_Day12D2- bigWig Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_reverse 0 1091 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor2.CNhs14576.13486-145B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13486-145B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_tpm_rev MyoblastToMyotubes_Day12D2- bigWig Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_reverse 1 1091 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor2.CNhs14576.13486-145B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13486-145B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Egr1V0422111PkRep2 ECC1 Egr-1 V11 2 broadPeak ECC-1 Egr-1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1092 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 Egr-1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 Egr-1 V11 2\ subGroups view=Peaks factor=EGR1 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Egr1V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF743FZS hepatocyte EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in hepatocyte from ENCODE 3 (ENCFF743FZS) 1 1092 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in hepatocyte from ENCODE 3 (ENCFF743FZS)\ parent encTfChipPk off\ shortLabel hepatocyte EZH2\ subGroups cellType=hepatocyte factor=EZH2\ track encTfChipPkENCFF743FZS\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_ctss_rev MyoblastToMyotubes_Day12D2- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_reverse 0 1092 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14604.13513-145E3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13513-145E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_tpm_rev MyoblastToMyotubes_Day12D2- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_reverse 1 1092 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14604.13513-145E3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13513-145E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Egr1V0422111RawRep2 ECC1 Egr-1 V11 2 bigWig 1.000000 1699.000000 ECC-1 Egr-1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1093 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 Egr-1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 Egr-1 V11 2\ subGroups view=RawSignal factor=EGR1 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Egr1V0422111RawRep2\ type bigWig 1.000000 1699.000000\ encTfChipPkENCFF226MQR keratinocyte CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in keratinocyte from ENCODE 3 (ENCFF226MQR) 1 1093 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in keratinocyte from ENCODE 3 (ENCFF226MQR)\ parent encTfChipPk off\ shortLabel keratinocyte CTCF\ subGroups cellType=keratinocyte factor=CTCF\ track encTfChipPkENCFF226MQR\ MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_ctss_fwd MyoblastToMyotubes_Day12D3+ bigWig Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_forward 0 1093 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor3.CNhs14585.13495-145C3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13495-145C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_tpm_fwd MyoblastToMyotubes_Day12D3+ bigWig Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_forward 1 1093 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor3.CNhs14585.13495-145C3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13495-145C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1EraaV0416102Bpa1hPkRep1 ECC1 ERa BPA 1 broadPeak ECC-1 ERa a BPA v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1094 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 ERa a BPA v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 ERa BPA 1\ subGroups view=Peaks factor=ERAA cellType=t3ECC1 protocol=V0416102 treatment=BPA1H rep=rep1\ track wgEncodeHaibTfbsEcc1EraaV0416102Bpa1hPkRep1\ type broadPeak\ encTfChipPkENCFF168VBK kidneyEpith CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in kidney_epithelial_cell from ENCODE 3 (ENCFF168VBK) 1 1094 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in kidney_epithelial_cell from ENCODE 3 (ENCFF168VBK)\ parent encTfChipPk off\ shortLabel kidneyEpith CTCF\ subGroups cellType=kidney_epithelial_cell factor=CTCF\ track encTfChipPkENCFF168VBK\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_ctss_fwd MyoblastToMyotubes_Day12D3+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_forward 0 1094 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14613.13522-145F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13522-145F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_tpm_fwd MyoblastToMyotubes_Day12D3+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_forward 1 1094 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14613.13522-145F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13522-145F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1EraaV0416102Bpa1hRawRep1 ECC1 ERa BPA 1 bigWig 0.280285 174.828003 ECC-1 ERa a BPA v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1095 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 ERa a BPA v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 ERa BPA 1\ subGroups view=RawSignal factor=ERAA cellType=t3ECC1 protocol=V0416102 treatment=BPA1H rep=rep1\ track wgEncodeHaibTfbsEcc1EraaV0416102Bpa1hRawRep1\ type bigWig 0.280285 174.828003\ encTfChipPkENCFF566FVB liver ATF3 1 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in liver from ENCODE 3 (ENCFF566FVB) 1 1095 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ATF3 in liver from ENCODE 3 (ENCFF566FVB)\ parent encTfChipPk off\ shortLabel liver ATF3 1\ subGroups cellType=liver factor=ATF3\ track encTfChipPkENCFF566FVB\ MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_ctss_rev MyoblastToMyotubes_Day12D3- bigWig Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_reverse 0 1095 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor3.CNhs14585.13495-145C3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13495-145C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_tpm_rev MyoblastToMyotubes_Day12D3- bigWig Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_reverse 1 1095 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor3.CNhs14585.13495-145C3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13495-145C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1EraaV0416102Bpa1hPkRep2 ECC1 ERa BPA 2 broadPeak ECC-1 ERa a BPA v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1096 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 ERa a BPA v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 ERa BPA 2\ subGroups view=Peaks factor=ERAA cellType=t3ECC1 protocol=V0416102 treatment=BPA1H rep=rep2\ track wgEncodeHaibTfbsEcc1EraaV0416102Bpa1hPkRep2\ type broadPeak\ encTfChipPkENCFF975PTM liver ATF3 2 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in liver from ENCODE 3 (ENCFF975PTM) 1 1096 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ATF3 in liver from ENCODE 3 (ENCFF975PTM)\ parent encTfChipPk off\ shortLabel liver ATF3 2\ subGroups cellType=liver factor=ATF3\ track encTfChipPkENCFF975PTM\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_ctss_rev MyoblastToMyotubes_Day12D3- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_reverse 0 1096 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14613.13522-145F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13522-145F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_tpm_rev MyoblastToMyotubes_Day12D3- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_reverse 1 1096 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14613.13522-145F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13522-145F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1EraaV0416102Bpa1hRawRep2 ECC1 ERa BPA 2 bigWig 0.195066 205.063004 ECC-1 ERa a BPA v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1097 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 ERa a BPA v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 ERa BPA 2\ subGroups view=RawSignal factor=ERAA cellType=t3ECC1 protocol=V0416102 treatment=BPA1H rep=rep2\ track wgEncodeHaibTfbsEcc1EraaV0416102Bpa1hRawRep2\ type bigWig 0.195066 205.063004\ encTfChipPkENCFF690BYG liver CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in liver from ENCODE 3 (ENCFF690BYG) 1 1097 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in liver from ENCODE 3 (ENCFF690BYG)\ parent encTfChipPk off\ shortLabel liver CTCF\ subGroups cellType=liver factor=CTCF\ track encTfChipPkENCFF690BYG\ AdipocyteDifferentiationDay04Donor1_CNhs12516_ctss_fwd Tc:AdipoDiff_Day04D1+ bigWig Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_forward 0 1097 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor1.CNhs12516.13019-139D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13019-139D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor1_CNhs12516_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor1_CNhs12516_tpm_fwd Tc:AdipoDiff_Day04D1+ bigWig Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_forward 1 1097 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor1.CNhs12516.13019-139D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13019-139D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor1_CNhs12516_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1EralphaaV0416102Dm002p1hRawRep1 ECC1 ERa DMSO 1 bigWig 0.304396 152.350006 ECC-1 ERa a DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1098 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 ERa a DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 ERa DMSO 1\ subGroups view=RawSignal factor=ERAA cellType=t3ECC1 protocol=V0416102 treatment=DM002P1H rep=rep1\ track wgEncodeHaibTfbsEcc1EralphaaV0416102Dm002p1hRawRep1\ type bigWig 0.304396 152.350006\ encTfChipPkENCFF831MEQ liver EGR1 1 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in liver from ENCODE 3 (ENCFF831MEQ) 1 1098 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EGR1 in liver from ENCODE 3 (ENCFF831MEQ)\ parent encTfChipPk off\ shortLabel liver EGR1 1\ subGroups cellType=liver factor=EGR1\ track encTfChipPkENCFF831MEQ\ AdipocyteDifferentiationDay04Donor1_CNhs12516_ctss_rev Tc:AdipoDiff_Day04D1- bigWig Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_reverse 0 1098 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor1.CNhs12516.13019-139D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13019-139D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor1_CNhs12516_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor1_CNhs12516_tpm_rev Tc:AdipoDiff_Day04D1- bigWig Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_reverse 1 1098 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor1.CNhs12516.13019-139D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13019-139D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor1_CNhs12516_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1EralphaaV0416102Dm002p1hRawRep2 ECC1 ERa DMSO 2 bigWig 0.409478 197.470993 ECC-1 ERa a DMSO v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1099 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 ERa a DMSO v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 ERa DMSO 2\ subGroups view=RawSignal factor=ERAA cellType=t3ECC1 protocol=V0416102 treatment=DM002P1H rep=rep2\ track wgEncodeHaibTfbsEcc1EralphaaV0416102Dm002p1hRawRep2\ type bigWig 0.409478 197.470993\ encTfChipPkENCFF862SRI liver EGR1 2 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in liver from ENCODE 3 (ENCFF862SRI) 1 1099 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EGR1 in liver from ENCODE 3 (ENCFF862SRI)\ parent encTfChipPk off\ shortLabel liver EGR1 2\ subGroups cellType=liver factor=EGR1\ track encTfChipPkENCFF862SRI\ AdipocyteDifferentiationDay04Donor2_CNhs13410_ctss_fwd Tc:AdipoDiff_Day04D2+ bigWig Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_forward 0 1099 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor2.CNhs13410.13022-139D7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13022-139D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor2_CNhs13410_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor2_CNhs13410_tpm_fwd Tc:AdipoDiff_Day04D2+ bigWig Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_forward 1 1099 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor2.CNhs13410.13022-139D7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13022-139D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor2_CNhs13410_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1EralphaaV0416102Est10nm1hPkRep1 ECC1 ERa Estra 1 broadPeak ECC-1 ERa a Estradiol v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 ERa a Estradiol v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 ERa Estra 1\ subGroups view=Peaks factor=ERAA cellType=t3ECC1 protocol=V0416102 treatment=EST10NM1H rep=rep1\ track wgEncodeHaibTfbsEcc1EralphaaV0416102Est10nm1hPkRep1\ type broadPeak\ encTfChipPkENCFF126PNX liver FOXA1 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in liver from ENCODE 3 (ENCFF126PNX) 1 1100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in liver from ENCODE 3 (ENCFF126PNX)\ parent encTfChipPk off\ shortLabel liver FOXA1 1\ subGroups cellType=liver factor=FOXA1\ track encTfChipPkENCFF126PNX\ AdipocyteDifferentiationDay04Donor2_CNhs13410_ctss_rev Tc:AdipoDiff_Day04D2- bigWig Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_reverse 0 1100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor2.CNhs13410.13022-139D7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13022-139D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor2_CNhs13410_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor2_CNhs13410_tpm_rev Tc:AdipoDiff_Day04D2- bigWig Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_reverse 1 1100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor2.CNhs13410.13022-139D7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13022-139D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor2_CNhs13410_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1EralphaaV0416102Est10nm1hRawRep1 ECC1 ERa Estra 1 bigWig 0.314013 166.897995 ECC-1 ERa a Estradiol v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1101 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 ERa a Estradiol v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 ERa Estra 1\ subGroups view=RawSignal factor=ERAA cellType=t3ECC1 protocol=V0416102 treatment=EST10NM1H rep=rep1\ track wgEncodeHaibTfbsEcc1EralphaaV0416102Est10nm1hRawRep1\ type bigWig 0.314013 166.897995\ encTfChipPkENCFF207YNL liver FOXA1 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in liver from ENCODE 3 (ENCFF207YNL) 1 1101 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in liver from ENCODE 3 (ENCFF207YNL)\ parent encTfChipPk off\ shortLabel liver FOXA1 2\ subGroups cellType=liver factor=FOXA1\ track encTfChipPkENCFF207YNL\ AdipocyteDifferentiationDay04Donor3_CNhs13413_ctss_fwd Tc:AdipoDiff_Day04D3+ bigWig Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_forward 0 1101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor3.CNhs13413.13025-139E1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13025-139E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor3_CNhs13413_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor3_CNhs13413_tpm_fwd Tc:AdipoDiff_Day04D3+ bigWig Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_forward 1 1101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor3.CNhs13413.13025-139E1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13025-139E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor3_CNhs13413_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1EralphaaV0416102Est10nm1hPkRep2 ECC1 ERa Estra 2 broadPeak ECC-1 ERa a Estradiol v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1102 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 ERa a Estradiol v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 ERa Estra 2\ subGroups view=Peaks factor=ERAA cellType=t3ECC1 protocol=V0416102 treatment=EST10NM1H rep=rep2\ track wgEncodeHaibTfbsEcc1EralphaaV0416102Est10nm1hPkRep2\ type broadPeak\ encTfChipPkENCFF344EDE liver FOXA2 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA2 in liver from ENCODE 3 (ENCFF344EDE) 1 1102 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA2 in liver from ENCODE 3 (ENCFF344EDE)\ parent encTfChipPk off\ shortLabel liver FOXA2 1\ subGroups cellType=liver factor=FOXA2\ track encTfChipPkENCFF344EDE\ AdipocyteDifferentiationDay04Donor3_CNhs13413_ctss_rev Tc:AdipoDiff_Day04D3- bigWig Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_reverse 0 1102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor3.CNhs13413.13025-139E1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13025-139E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor3_CNhs13413_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor3_CNhs13413_tpm_rev Tc:AdipoDiff_Day04D3- bigWig Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_reverse 1 1102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor3.CNhs13413.13025-139E1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13025-139E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor3_CNhs13413_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1EralphaaV0416102Est10nm1hRawRep2 ECC1 ERa Estra 2 bigWig 0.332575 178.925003 ECC-1 ERa a Estradiol v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1103 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 ERa a Estradiol v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 ERa Estra 2\ subGroups view=RawSignal factor=ERAA cellType=t3ECC1 protocol=V0416102 treatment=EST10NM1H rep=rep2\ track wgEncodeHaibTfbsEcc1EralphaaV0416102Est10nm1hRawRep2\ type bigWig 0.332575 178.925003\ encTfChipPkENCFF786DKS liver FOXA2 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA2 in liver from ENCODE 3 (ENCFF786DKS) 1 1103 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA2 in liver from ENCODE 3 (ENCFF786DKS)\ parent encTfChipPk off\ shortLabel liver FOXA2 2\ subGroups cellType=liver factor=FOXA2\ track encTfChipPkENCFF786DKS\ AdipocyteDifferentiationDay04Donor4_CNhs13417_ctss_fwd Tc:AdipoDiff_Day04D4+ bigWig Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_forward 0 1103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor4.CNhs13417.13028-139E4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13028-139E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor4_CNhs13417_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor4_CNhs13417_tpm_fwd Tc:AdipoDiff_Day04D4+ bigWig Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_forward 1 1103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor4.CNhs13417.13028-139E4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13028-139E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor4_CNhs13417_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1EralphaaV0416102Gen1hPkRep1 ECC1 ERa Geni 1 broadPeak ECC-1 ERa a Genistein v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1104 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 ERa a Genistein v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 ERa Geni 1\ subGroups view=Peaks factor=ERAA cellType=t3ECC1 protocol=V0416102 treatment=GEN1H rep=rep1\ track wgEncodeHaibTfbsEcc1EralphaaV0416102Gen1hPkRep1\ type broadPeak\ encTfChipPkENCFF236XBR liver GABPA 1 narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in liver from ENCODE 3 (ENCFF236XBR) 1 1104 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GABPA in liver from ENCODE 3 (ENCFF236XBR)\ parent encTfChipPk off\ shortLabel liver GABPA 1\ subGroups cellType=liver factor=GABPA\ track encTfChipPkENCFF236XBR\ AdipocyteDifferentiationDay04Donor4_CNhs13417_ctss_rev Tc:AdipoDiff_Day04D4- bigWig Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_reverse 0 1104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor4.CNhs13417.13028-139E4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13028-139E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor4_CNhs13417_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor4_CNhs13417_tpm_rev Tc:AdipoDiff_Day04D4- bigWig Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_reverse 1 1104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor4.CNhs13417.13028-139E4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13028-139E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor4_CNhs13417_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1EralphaaV0416102Gen1hRawRep1 ECC1 ERa Geni 1 bigWig 0.415072 189.065002 ECC-1 ERa a Genistein v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1105 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 ERa a Genistein v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 ERa Geni 1\ subGroups view=RawSignal factor=ERAA cellType=t3ECC1 protocol=V0416102 treatment=GEN1H rep=rep1\ track wgEncodeHaibTfbsEcc1EralphaaV0416102Gen1hRawRep1\ type bigWig 0.415072 189.065002\ encTfChipPkENCFF258PIW liver GABPA 2 narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in liver from ENCODE 3 (ENCFF258PIW) 1 1105 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GABPA in liver from ENCODE 3 (ENCFF258PIW)\ parent encTfChipPk off\ shortLabel liver GABPA 2\ subGroups cellType=liver factor=GABPA\ track encTfChipPkENCFF258PIW\ AdipocyteDifferentiationDay08Donor1_CNhs12517_ctss_fwd Tc:AdipoDiff_Day08D1+ bigWig Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_forward 0 1105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor1.CNhs12517.13020-139D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13020-139D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor1_CNhs12517_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor1_CNhs12517_tpm_fwd Tc:AdipoDiff_Day08D1+ bigWig Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_forward 1 1105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor1.CNhs12517.13020-139D5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13020-139D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor1_CNhs12517_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1EralphaaV0416102Gen1hPkRep2 ECC1 ERa Geni 2 broadPeak ECC-1 ERa a Genistein v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1106 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 ERa a Genistein v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 ERa Geni 2\ subGroups view=Peaks factor=ERAA cellType=t3ECC1 protocol=V0416102 treatment=GEN1H rep=rep2\ track wgEncodeHaibTfbsEcc1EralphaaV0416102Gen1hPkRep2\ type broadPeak\ encTfChipPkENCFF201MOM liver HNF4A 1 narrowPeak Transcription Factor ChIP-seq Peaks of HNF4A in liver from ENCODE 3 (ENCFF201MOM) 1 1106 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HNF4A in liver from ENCODE 3 (ENCFF201MOM)\ parent encTfChipPk off\ shortLabel liver HNF4A 1\ subGroups cellType=liver factor=HNF4A\ track encTfChipPkENCFF201MOM\ AdipocyteDifferentiationDay08Donor1_CNhs12517_ctss_rev Tc:AdipoDiff_Day08D1- bigWig Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_reverse 0 1106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor1.CNhs12517.13020-139D5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13020-139D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor1_CNhs12517_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor1_CNhs12517_tpm_rev Tc:AdipoDiff_Day08D1- bigWig Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_reverse 1 1106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor1.CNhs12517.13020-139D5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13020-139D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor1_CNhs12517_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1EralphaaV0416102Gen1hRawRep2 ECC1 ERa Geni 2 bigWig 0.344932 195.921005 ECC-1 ERa a Genistein v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1107 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 ERa a Genistein v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 ERa Geni 2\ subGroups view=RawSignal factor=ERAA cellType=t3ECC1 protocol=V0416102 treatment=GEN1H rep=rep2\ track wgEncodeHaibTfbsEcc1EralphaaV0416102Gen1hRawRep2\ type bigWig 0.344932 195.921005\ encTfChipPkENCFF713MCF liver HNF4A 2 narrowPeak Transcription Factor ChIP-seq Peaks of HNF4A in liver from ENCODE 3 (ENCFF713MCF) 1 1107 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HNF4A in liver from ENCODE 3 (ENCFF713MCF)\ parent encTfChipPk off\ shortLabel liver HNF4A 2\ subGroups cellType=liver factor=HNF4A\ track encTfChipPkENCFF713MCF\ AdipocyteDifferentiationDay08Donor2_CNhs13411_ctss_fwd Tc:AdipoDiff_Day08D2+ bigWig Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_forward 0 1107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor2.CNhs13411.13023-139D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13023-139D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor2_CNhs13411_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor2_CNhs13411_tpm_fwd Tc:AdipoDiff_Day08D2+ bigWig Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_forward 1 1107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor2.CNhs13411.13023-139D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13023-139D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor2_CNhs13411_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Foxa1sc6553V0416102Dm002p1hPkRep1 ECC1 FOXA1 DMSO 1 broadPeak ECC-1 FOXA1 6553 DMSO v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1108 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 FOXA1 6553 DMSO v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 FOXA1 DMSO 1\ subGroups view=Peaks factor=FOXA1SC6553 cellType=t3ECC1 protocol=V0416102 treatment=DM002P1H rep=rep1\ track wgEncodeHaibTfbsEcc1Foxa1sc6553V0416102Dm002p1hPkRep1\ type broadPeak\ encTfChipPkENCFF971QHN liver HNF4G narrowPeak Transcription Factor ChIP-seq Peaks of HNF4G in liver from ENCODE 3 (ENCFF971QHN) 1 1108 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HNF4G in liver from ENCODE 3 (ENCFF971QHN)\ parent encTfChipPk off\ shortLabel liver HNF4G\ subGroups cellType=liver factor=HNF4G\ track encTfChipPkENCFF971QHN\ AdipocyteDifferentiationDay08Donor2_CNhs13411_ctss_rev Tc:AdipoDiff_Day08D2- bigWig Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_reverse 0 1108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor2.CNhs13411.13023-139D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13023-139D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor2_CNhs13411_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor2_CNhs13411_tpm_rev Tc:AdipoDiff_Day08D2- bigWig Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_reverse 1 1108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor2.CNhs13411.13023-139D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13023-139D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor2_CNhs13411_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Foxa1sc6553V0416102Dm002p1hRawRep1 ECC1 FOXA1 DMSO 1 bigWig 0.214719 212.035004 ECC-1 FOXA1 6553 DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1109 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 FOXA1 6553 DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 FOXA1 DMSO 1\ subGroups view=RawSignal factor=FOXA1SC6553 cellType=t3ECC1 protocol=V0416102 treatment=DM002P1H rep=rep1\ track wgEncodeHaibTfbsEcc1Foxa1sc6553V0416102Dm002p1hRawRep1\ type bigWig 0.214719 212.035004\ encTfChipPkENCFF804UDG liver JUND 1 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in liver from ENCODE 3 (ENCFF804UDG) 1 1109 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUND in liver from ENCODE 3 (ENCFF804UDG)\ parent encTfChipPk on\ shortLabel liver JUND 1\ subGroups cellType=liver factor=JUND\ track encTfChipPkENCFF804UDG\ AdipocyteDifferentiationDay08Donor3_CNhs13415_ctss_fwd Tc:AdipoDiff_Day08D3+ bigWig Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_forward 0 1109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor3.CNhs13415.13026-139E2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13026-139E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor3_CNhs13415_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor3_CNhs13415_tpm_fwd Tc:AdipoDiff_Day08D3+ bigWig Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_forward 1 1109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor3.CNhs13415.13026-139E2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13026-139E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor3_CNhs13415_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Foxa1sc6553V0416102Dm002p1hPkRep2 ECC1 FOXA1 DMSO 2 broadPeak ECC-1 FOXA1 6553 DMSO v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1110 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 FOXA1 6553 DMSO v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 FOXA1 DMSO 2\ subGroups view=Peaks factor=FOXA1SC6553 cellType=t3ECC1 protocol=V0416102 treatment=DM002P1H rep=rep2\ track wgEncodeHaibTfbsEcc1Foxa1sc6553V0416102Dm002p1hPkRep2\ type broadPeak\ encTfChipPkENCFF693FRV liver JUND 2 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in liver from ENCODE 3 (ENCFF693FRV) 1 1110 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUND in liver from ENCODE 3 (ENCFF693FRV)\ parent encTfChipPk off\ shortLabel liver JUND 2\ subGroups cellType=liver factor=JUND\ track encTfChipPkENCFF693FRV\ AdipocyteDifferentiationDay08Donor3_CNhs13415_ctss_rev Tc:AdipoDiff_Day08D3- bigWig Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_reverse 0 1110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor3.CNhs13415.13026-139E2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13026-139E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor3_CNhs13415_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor3_CNhs13415_tpm_rev Tc:AdipoDiff_Day08D3- bigWig Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_reverse 1 1110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor3.CNhs13415.13026-139E2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13026-139E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor3_CNhs13415_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Foxa1sc6553V0416102Dm002p1hRawRep2 ECC1 FOXA1 DMSO 2 bigWig 0.221521 202.138000 ECC-1 FOXA1 6553 DMSO v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1111 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 FOXA1 6553 DMSO v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 FOXA1 DMSO 2\ subGroups view=RawSignal factor=FOXA1SC6553 cellType=t3ECC1 protocol=V0416102 treatment=DM002P1H rep=rep2\ track wgEncodeHaibTfbsEcc1Foxa1sc6553V0416102Dm002p1hRawRep2\ type bigWig 0.221521 202.138000\ encTfChipPkENCFF840NOO liver MAX 1 narrowPeak Transcription Factor ChIP-seq Peaks of MAX in liver from ENCODE 3 (ENCFF840NOO) 1 1111 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MAX in liver from ENCODE 3 (ENCFF840NOO)\ parent encTfChipPk off\ shortLabel liver MAX 1\ subGroups cellType=liver factor=MAX\ track encTfChipPkENCFF840NOO\ AdipocyteDifferentiationDay08Donor4_CNhs13418_ctss_fwd Tc:AdipoDiff_Day08D4+ bigWig Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_forward 0 1111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor4.CNhs13418.13029-139E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13029-139E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor4_CNhs13418_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor4_CNhs13418_tpm_fwd Tc:AdipoDiff_Day08D4+ bigWig Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_forward 1 1111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor4.CNhs13418.13029-139E5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13029-139E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor4_CNhs13418_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Foxm1sc502V0422111PkRep1 ECC1 FOXM1 V11 1 broadPeak ECC-1 FOXM1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1112 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 FOXM1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 FOXM1 V11 1\ subGroups view=Peaks factor=FOXM1SC502 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Foxm1sc502V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF612TRG liver MAX 2 narrowPeak Transcription Factor ChIP-seq Peaks of MAX in liver from ENCODE 3 (ENCFF612TRG) 1 1112 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MAX in liver from ENCODE 3 (ENCFF612TRG)\ parent encTfChipPk off\ shortLabel liver MAX 2\ subGroups cellType=liver factor=MAX\ track encTfChipPkENCFF612TRG\ AdipocyteDifferentiationDay08Donor4_CNhs13418_ctss_rev Tc:AdipoDiff_Day08D4- bigWig Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_reverse 0 1112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor4.CNhs13418.13029-139E5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13029-139E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor4_CNhs13418_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor4_CNhs13418_tpm_rev Tc:AdipoDiff_Day08D4- bigWig Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_reverse 1 1112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor4.CNhs13418.13029-139E5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13029-139E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor4_CNhs13418_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Foxm1sc502V0422111RawRep1 ECC1 FOXM1 V11 1 bigWig 1.000000 1883.000000 ECC-1 FOXM1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1113 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 FOXM1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 FOXM1 V11 1\ subGroups view=RawSignal factor=FOXM1SC502 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Foxm1sc502V0422111RawRep1\ type bigWig 1.000000 1883.000000\ encTfChipPkENCFF266KLW liver NR2F2 1 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F2 in liver from ENCODE 3 (ENCFF266KLW) 1 1113 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR2F2 in liver from ENCODE 3 (ENCFF266KLW)\ parent encTfChipPk off\ shortLabel liver NR2F2 1\ subGroups cellType=liver factor=NR2F2\ track encTfChipPkENCFF266KLW\ AdipocyteDifferentiationDay12Donor1_CNhs13336_ctss_fwd Tc:AdipoDiff_Day12D1+ bigWig Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_forward 0 1113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor1.CNhs13336.13021-139D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13021-139D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor1_CNhs13336_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor1_CNhs13336_tpm_fwd Tc:AdipoDiff_Day12D1+ bigWig Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_forward 1 1113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor1.CNhs13336.13021-139D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13021-139D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor1_CNhs13336_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Foxm1sc502V0422111PkRep2 ECC1 FOXM1 V11 2 broadPeak ECC-1 FOXM1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1114 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 FOXM1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 FOXM1 V11 2\ subGroups view=Peaks factor=FOXM1SC502 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Foxm1sc502V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF168INE liver NR2F2 2 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F2 in liver from ENCODE 3 (ENCFF168INE) 1 1114 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR2F2 in liver from ENCODE 3 (ENCFF168INE)\ parent encTfChipPk off\ shortLabel liver NR2F2 2\ subGroups cellType=liver factor=NR2F2\ track encTfChipPkENCFF168INE\ AdipocyteDifferentiationDay12Donor1_CNhs13336_ctss_rev Tc:AdipoDiff_Day12D1- bigWig Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_reverse 0 1114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor1.CNhs13336.13021-139D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13021-139D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor1_CNhs13336_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor1_CNhs13336_tpm_rev Tc:AdipoDiff_Day12D1- bigWig Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_reverse 1 1114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor1.CNhs13336.13021-139D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13021-139D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor1_CNhs13336_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Foxm1sc502V0422111RawRep2 ECC1 FOXM1 V11 2 bigWig 1.000000 1368.000000 ECC-1 FOXM1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1115 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 FOXM1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 FOXM1 V11 2\ subGroups view=RawSignal factor=FOXM1SC502 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Foxm1sc502V0422111RawRep2\ type bigWig 1.000000 1368.000000\ encTfChipPkENCFF233DOW liver RAD21 1 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF233DOW) 1 1115 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF233DOW)\ parent encTfChipPk off\ shortLabel liver RAD21 1\ subGroups cellType=liver factor=RAD21\ track encTfChipPkENCFF233DOW\ AdipocyteDifferentiationDay12Donor2_CNhs13412_ctss_fwd Tc:AdipoDiff_Day12D2+ bigWig Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_forward 0 1115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor2.CNhs13412.13024-139D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13024-139D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor2_CNhs13412_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor2_CNhs13412_tpm_fwd Tc:AdipoDiff_Day12D2+ bigWig Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_forward 1 1115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor2.CNhs13412.13024-139D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13024-139D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor2_CNhs13412_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1GrV0416102Dex100nmPkRep1 ECC1 GR DEX PC2 1 broadPeak ECC-1 GR DEX 100nM PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1116 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 GR DEX 100nM PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 GR DEX PC2 1\ subGroups view=Peaks factor=GR cellType=t3ECC1 protocol=PCR2X treatment=DEX100NM rep=rep1\ track wgEncodeHaibTfbsEcc1GrV0416102Dex100nmPkRep1\ type broadPeak\ encTfChipPkENCFF708GMO liver RAD21 2 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF708GMO) 1 1116 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF708GMO)\ parent encTfChipPk off\ shortLabel liver RAD21 2\ subGroups cellType=liver factor=RAD21\ track encTfChipPkENCFF708GMO\ AdipocyteDifferentiationDay12Donor2_CNhs13412_ctss_rev Tc:AdipoDiff_Day12D2- bigWig Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_reverse 0 1116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor2.CNhs13412.13024-139D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13024-139D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor2_CNhs13412_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor2_CNhs13412_tpm_rev Tc:AdipoDiff_Day12D2- bigWig Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_reverse 1 1116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor2.CNhs13412.13024-139D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13024-139D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor2_CNhs13412_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1GrV0416102Dex100nmPkRep2 ECC1 GR DEX PC2 2 broadPeak ECC-1 GR DEX 100nM PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1117 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 GR DEX 100nM PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 GR DEX PC2 2\ subGroups view=Peaks factor=GR cellType=t3ECC1 protocol=PCR2X treatment=DEX100NM rep=rep2\ track wgEncodeHaibTfbsEcc1GrV0416102Dex100nmPkRep2\ type broadPeak\ encTfChipPkENCFF108ZTV liver RAD21 3 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF108ZTV) 1 1117 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF108ZTV)\ parent encTfChipPk off\ shortLabel liver RAD21 3\ subGroups cellType=liver factor=RAD21\ track encTfChipPkENCFF108ZTV\ AdipocyteDifferentiationDay12Donor3_CNhs13416_ctss_fwd Tc:AdipoDiff_Day12D3+ bigWig Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_forward 0 1117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor3.CNhs13416.13027-139E3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13027-139E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor3_CNhs13416_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor3_CNhs13416_tpm_fwd Tc:AdipoDiff_Day12D3+ bigWig Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_forward 1 1117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor3.CNhs13416.13027-139E3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13027-139E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor3_CNhs13416_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1GrV0416102Dex100nmRawRep1 ECC1 GR DEX 102 1 bigWig 0.393211 166.720993 ECC-1 GR DEX 100nM v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1118 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 GR DEX 100nM v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 GR DEX 102 1\ subGroups view=RawSignal factor=GR cellType=t3ECC1 protocol=V0416102 treatment=DEX100NM rep=rep1\ track wgEncodeHaibTfbsEcc1GrV0416102Dex100nmRawRep1\ type bigWig 0.393211 166.720993\ encTfChipPkENCFF334FKO liver REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in liver from ENCODE 3 (ENCFF334FKO) 1 1118 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in liver from ENCODE 3 (ENCFF334FKO)\ parent encTfChipPk off\ shortLabel liver REST 1\ subGroups cellType=liver factor=REST\ track encTfChipPkENCFF334FKO\ AdipocyteDifferentiationDay12Donor3_CNhs13416_ctss_rev Tc:AdipoDiff_Day12D3- bigWig Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_reverse 0 1118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor3.CNhs13416.13027-139E3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13027-139E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor3_CNhs13416_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor3_CNhs13416_tpm_rev Tc:AdipoDiff_Day12D3- bigWig Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_reverse 1 1118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor3.CNhs13416.13027-139E3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13027-139E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor3_CNhs13416_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1GrV0416102Dex100nmRawRep2 ECC1 GR DEX 102 2 bigWig 0.162726 146.371994 ECC-1 GR DEX 100nM v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1119 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 GR DEX 100nM v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 GR DEX 102 2\ subGroups view=RawSignal factor=GR cellType=t3ECC1 protocol=V0416102 treatment=DEX100NM rep=rep2\ track wgEncodeHaibTfbsEcc1GrV0416102Dex100nmRawRep2\ type bigWig 0.162726 146.371994\ encTfChipPkENCFF510UBQ liver REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in liver from ENCODE 3 (ENCFF510UBQ) 1 1119 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in liver from ENCODE 3 (ENCFF510UBQ)\ parent encTfChipPk off\ shortLabel liver REST 2\ subGroups cellType=liver factor=REST\ track encTfChipPkENCFF510UBQ\ AdipocyteDifferentiationDay12Donor4_CNhs13419_ctss_fwd Tc:AdipoDiff_Day12D4+ bigWig Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_forward 0 1119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor4.CNhs13419.13030-139E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13030-139E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor4_CNhs13419_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor4_CNhs13419_tpm_fwd Tc:AdipoDiff_Day12D4+ bigWig Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_forward 1 1119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor4.CNhs13419.13030-139E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13030-139E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor4_CNhs13419_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1GrV0416102Etoh02RawRep1 ECC1 GR EtOH 1 bigWig 0.276450 200.910004 ECC-1 GR EtOH v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1120 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 GR EtOH v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 GR EtOH 1\ subGroups view=RawSignal factor=GR cellType=t3ECC1 protocol=V0416102 treatment=ETOH02 rep=rep1\ track wgEncodeHaibTfbsEcc1GrV0416102Etoh02RawRep1\ type bigWig 0.276450 200.910004\ encTfChipPkENCFF651LIG liver RXRA 1 narrowPeak Transcription Factor ChIP-seq Peaks of RXRA in liver from ENCODE 3 (ENCFF651LIG) 1 1120 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RXRA in liver from ENCODE 3 (ENCFF651LIG)\ parent encTfChipPk off\ shortLabel liver RXRA 1\ subGroups cellType=liver factor=RXRA\ track encTfChipPkENCFF651LIG\ AdipocyteDifferentiationDay12Donor4_CNhs13419_ctss_rev Tc:AdipoDiff_Day12D4- bigWig Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_reverse 0 1120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor4.CNhs13419.13030-139E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13030-139E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor4_CNhs13419_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor4_CNhs13419_tpm_rev Tc:AdipoDiff_Day12D4- bigWig Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_reverse 1 1120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor4.CNhs13419.13030-139E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13030-139E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor4_CNhs13419_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1GrV0416102Etoh02RawRep2 ECC1 GR EtOH 2 bigWig 0.175482 142.360001 ECC-1 GR EtOH v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1121 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 GR EtOH v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 GR EtOH 2\ subGroups view=RawSignal factor=GR cellType=t3ECC1 protocol=V0416102 treatment=ETOH02 rep=rep2\ track wgEncodeHaibTfbsEcc1GrV0416102Etoh02RawRep2\ type bigWig 0.175482 142.360001\ encTfChipPkENCFF189HPG liver RXRA 2 narrowPeak Transcription Factor ChIP-seq Peaks of RXRA in liver from ENCODE 3 (ENCFF189HPG) 1 1121 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RXRA in liver from ENCODE 3 (ENCFF189HPG)\ parent encTfChipPk off\ shortLabel liver RXRA 2\ subGroups cellType=liver factor=RXRA\ track encTfChipPkENCFF189HPG\ 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_ctss_fwd Tc:293SlamRinderpest_00hrBr1+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_forward 0 1121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14406.13541-145H4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13541-145H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_tpm_fwd Tc:293SlamRinderpest_00hrBr1+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_forward 1 1121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14406.13541-145H4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13541-145H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1MaxV0422111PkRep1 ECC1 Max V11 1 broadPeak ECC-1 Max v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1122 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 Max v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 Max V11 1\ subGroups view=Peaks factor=MAX cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1MaxV0422111PkRep1\ type broadPeak\ encTfChipPkENCFF881EJW liver SP1 1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in liver from ENCODE 3 (ENCFF881EJW) 1 1122 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SP1 in liver from ENCODE 3 (ENCFF881EJW)\ parent encTfChipPk off\ shortLabel liver SP1 1\ subGroups cellType=liver factor=SP1\ track encTfChipPkENCFF881EJW\ 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_ctss_rev Tc:293SlamRinderpest_00hrBr1- bigWig 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_reverse 0 1122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14406.13541-145H4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13541-145H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_tpm_rev Tc:293SlamRinderpest_00hrBr1- bigWig 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_reverse 1 1122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14406.13541-145H4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13541-145H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1MaxV0422111RawRep1 ECC1 Max V11 1 bigWig 1.000000 1220.000000 ECC-1 Max v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1123 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 Max v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 Max V11 1\ subGroups view=RawSignal factor=MAX cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1MaxV0422111RawRep1\ type bigWig 1.000000 1220.000000\ encTfChipPkENCFF017YUI liver SP1 2 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in liver from ENCODE 3 (ENCFF017YUI) 1 1123 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SP1 in liver from ENCODE 3 (ENCFF017YUI)\ parent encTfChipPk off\ shortLabel liver SP1 2\ subGroups cellType=liver factor=SP1\ track encTfChipPkENCFF017YUI\ 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_ctss_fwd Tc:293SlamRinderpest_00hrBr2+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_forward 0 1123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14407.13542-145H5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13542-145H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_tpm_fwd Tc:293SlamRinderpest_00hrBr2+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_forward 1 1123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14407.13542-145H5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13542-145H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1MaxV0422111PkRep2 ECC1 Max V11 2 broadPeak ECC-1 Max v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1124 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 Max v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 Max V11 2\ subGroups view=Peaks factor=MAX cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1MaxV0422111PkRep2\ type broadPeak\ encTfChipPkENCFF739PUT liver TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in liver from ENCODE 3 (ENCFF739PUT) 1 1124 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TAF1 in liver from ENCODE 3 (ENCFF739PUT)\ parent encTfChipPk off\ shortLabel liver TAF1\ subGroups cellType=liver factor=TAF1\ track encTfChipPkENCFF739PUT\ 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_ctss_rev Tc:293SlamRinderpest_00hrBr2- bigWig 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_reverse 0 1124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14407.13542-145H5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13542-145H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_tpm_rev Tc:293SlamRinderpest_00hrBr2- bigWig 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_reverse 1 1124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14407.13542-145H5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13542-145H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1MaxV0422111RawRep2 ECC1 Max V11 2 bigWig 1.000000 1537.000000 ECC-1 Max v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1125 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 Max v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 Max V11 2\ subGroups view=RawSignal factor=MAX cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1MaxV0422111RawRep2\ type bigWig 1.000000 1537.000000\ encTfChipPkENCFF566WSG liver YY1 1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in liver from ENCODE 3 (ENCFF566WSG) 1 1125 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of YY1 in liver from ENCODE 3 (ENCFF566WSG)\ parent encTfChipPk off\ shortLabel liver YY1 1\ subGroups cellType=liver factor=YY1\ track encTfChipPkENCFF566WSG\ 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_ctss_fwd Tc:293SlamRinderpest_00hrBr3+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_forward 0 1125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14408.13543-145H6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13543-145H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_tpm_fwd Tc:293SlamRinderpest_00hrBr3+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_forward 1 1125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14408.13543-145H6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13543-145H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Nficsc81335V0422111PkRep1 ECC1 NFIC V11 1 broadPeak ECC-1 NFIC v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1126 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 NFIC v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 NFIC V11 1\ subGroups view=Peaks factor=NFICSC81335 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Nficsc81335V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF851HUJ liver YY1 2 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in liver from ENCODE 3 (ENCFF851HUJ) 1 1126 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of YY1 in liver from ENCODE 3 (ENCFF851HUJ)\ parent encTfChipPk off\ shortLabel liver YY1 2\ subGroups cellType=liver factor=YY1\ track encTfChipPkENCFF851HUJ\ 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_ctss_rev Tc:293SlamRinderpest_00hrBr3- bigWig 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_reverse 0 1126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14408.13543-145H6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13543-145H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_tpm_rev Tc:293SlamRinderpest_00hrBr3- bigWig 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_reverse 1 1126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14408.13543-145H6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13543-145H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Nficsc81335V0422111RawRep1 ECC1 NFIC V11 1 bigWig 1.000000 1405.000000 ECC-1 NFIC v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1127 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 NFIC v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 NFIC V11 1\ subGroups view=RawSignal factor=NFICSC81335 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Nficsc81335V0422111RawRep1\ type bigWig 1.000000 1405.000000\ encTfChipPkENCFF688LUP liver ZBTB33 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in liver from ENCODE 3 (ENCFF688LUP) 1 1127 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in liver from ENCODE 3 (ENCFF688LUP)\ parent encTfChipPk off\ shortLabel liver ZBTB33 1\ subGroups cellType=liver factor=ZBTB33\ track encTfChipPkENCFF688LUP\ 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_ctss_fwd Tc:293SlamRinderpest_06hrBr1+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_forward 0 1127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14410.13544-145H7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13544-145H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_tpm_fwd Tc:293SlamRinderpest_06hrBr1+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_forward 1 1127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14410.13544-145H7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13544-145H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Nficsc81335V0422111PkRep2 ECC1 NFIC V11 2 broadPeak ECC-1 NFIC v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1128 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 NFIC v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 NFIC V11 2\ subGroups view=Peaks factor=NFICSC81335 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Nficsc81335V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF189TVG liver ZBTB33 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in liver from ENCODE 3 (ENCFF189TVG) 1 1128 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in liver from ENCODE 3 (ENCFF189TVG)\ parent encTfChipPk off\ shortLabel liver ZBTB33 2\ subGroups cellType=liver factor=ZBTB33\ track encTfChipPkENCFF189TVG\ 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_ctss_rev Tc:293SlamRinderpest_06hrBr1- bigWig 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_reverse 0 1128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14410.13544-145H7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13544-145H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_tpm_rev Tc:293SlamRinderpest_06hrBr1- bigWig 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_reverse 1 1128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14410.13544-145H7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13544-145H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Nficsc81335V0422111RawRep2 ECC1 NFIC V11 2 bigWig 1.000000 2185.000000 ECC-1 NFIC v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1129 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 NFIC v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 NFIC V11 2\ subGroups view=RawSignal factor=NFICSC81335 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Nficsc81335V0422111RawRep2\ type bigWig 1.000000 2185.000000\ encTfChipPkENCFF733VAF lwrLegSkin CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF733VAF) 1 1129 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF733VAF)\ parent encTfChipPk off\ shortLabel lwrLegSkin CTCF 1\ subGroups cellType=lower_leg_skin factor=CTCF\ track encTfChipPkENCFF733VAF\ 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_ctss_fwd Tc:293SlamRinderpest_06hrBr2+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_forward 0 1129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14411.13545-145H8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13545-145H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_tpm_fwd Tc:293SlamRinderpest_06hrBr2+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_forward 1 1129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14411.13545-145H8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13545-145H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1NrsfV0422111PkRep1 ECC1 NRSF V11 1 broadPeak ECC-1 NRSF v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1130 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 NRSF v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 NRSF V11 1\ subGroups view=Peaks factor=NRSF cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1NrsfV0422111PkRep1\ type broadPeak\ encTfChipPkENCFF751UAF lwrLegSkin CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF751UAF) 1 1130 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF751UAF)\ parent encTfChipPk off\ shortLabel lwrLegSkin CTCF 2\ subGroups cellType=lower_leg_skin factor=CTCF\ track encTfChipPkENCFF751UAF\ 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_ctss_rev Tc:293SlamRinderpest_06hrBr2- bigWig 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_reverse 0 1130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14411.13545-145H8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13545-145H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_tpm_rev Tc:293SlamRinderpest_06hrBr2- bigWig 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_reverse 1 1130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14411.13545-145H8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13545-145H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1NrsfV0422111RawRep1 ECC1 NRSF V11 1 bigWig 1.000000 3510.000000 ECC-1 NRSF v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1131 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 NRSF v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 NRSF V11 1\ subGroups view=RawSignal factor=NRSF cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1NrsfV0422111RawRep1\ type bigWig 1.000000 3510.000000\ encTfChipPkENCFF637FOR lwrLegSkin CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF637FOR) 1 1131 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF637FOR)\ parent encTfChipPk off\ shortLabel lwrLegSkin CTCF 3\ subGroups cellType=lower_leg_skin factor=CTCF\ track encTfChipPkENCFF637FOR\ 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_ctss_fwd Tc:293SlamRinderpest_06hrBr3+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_forward 0 1131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14412.13546-145H9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13546-145H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_tpm_fwd Tc:293SlamRinderpest_06hrBr3+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_forward 1 1131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14412.13546-145H9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13546-145H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1NrsfV0422111PkRep2 ECC1 NRSF V11 2 broadPeak ECC-1 NRSF v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1132 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 NRSF v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 NRSF V11 2\ subGroups view=Peaks factor=NRSF cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1NrsfV0422111PkRep2\ type broadPeak\ encTfChipPkENCFF054PUP lwrLegSkin CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF054PUP) 1 1132 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF054PUP)\ parent encTfChipPk off\ shortLabel lwrLegSkin CTCF 4\ subGroups cellType=lower_leg_skin factor=CTCF\ track encTfChipPkENCFF054PUP\ 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_ctss_rev Tc:293SlamRinderpest_06hrBr3- bigWig 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_reverse 0 1132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14412.13546-145H9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13546-145H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_tpm_rev Tc:293SlamRinderpest_06hrBr3- bigWig 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_reverse 1 1132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14412.13546-145H9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13546-145H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1NrsfV0422111RawRep2 ECC1 NRSF V11 2 bigWig 1.000000 5592.000000 ECC-1 NRSF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1133 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 NRSF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 NRSF V11 2\ subGroups view=RawSignal factor=NRSF cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1NrsfV0422111RawRep2\ type bigWig 1.000000 5592.000000\ encTfChipPkENCFF034NUV lwrLgSkn POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in lower_leg_skin from ENCODE 3 (ENCFF034NUV) 1 1133 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in lower_leg_skin from ENCODE 3 (ENCFF034NUV)\ parent encTfChipPk off\ shortLabel lwrLgSkn POLR2A 1\ subGroups cellType=lower_leg_skin factor=POLR2A\ track encTfChipPkENCFF034NUV\ 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_ctss_fwd Tc:293SlamRinderpest_12hrBr1+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_forward 0 1133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14413.13547-145I1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13547-145I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_tpm_fwd Tc:293SlamRinderpest_12hrBr1+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_forward 1 1133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14413.13547-145I1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13547-145I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1P300V0422111PkRep1 ECC1 p300 V11 1 broadPeak ECC-1 p300 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1134 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 p300 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 p300 V11 1\ subGroups view=Peaks factor=P300 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1P300V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF818LBB lwrLgSkn POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in lower_leg_skin from ENCODE 3 (ENCFF818LBB) 1 1134 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in lower_leg_skin from ENCODE 3 (ENCFF818LBB)\ parent encTfChipPk off\ shortLabel lwrLgSkn POLR2A 2\ subGroups cellType=lower_leg_skin factor=POLR2A\ track encTfChipPkENCFF818LBB\ 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_ctss_rev Tc:293SlamRinderpest_12hrBr1- bigWig 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_reverse 0 1134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14413.13547-145I1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13547-145I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_tpm_rev Tc:293SlamRinderpest_12hrBr1- bigWig 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_reverse 1 1134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14413.13547-145I1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13547-145I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1P300V0422111RawRep1 ECC1 p300 V11 1 bigWig 1.000000 1688.000000 ECC-1 p300 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1135 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 p300 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 p300 V11 1\ subGroups view=RawSignal factor=P300 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1P300V0422111RawRep1\ type bigWig 1.000000 1688.000000\ encTfChipPkENCFF288RFS mammaryEpith CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in mammary_epithelial_cell from ENCODE 3 (ENCFF288RFS) 1 1135 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in mammary_epithelial_cell from ENCODE 3 (ENCFF288RFS)\ parent encTfChipPk off\ shortLabel mammaryEpith CTCF\ subGroups cellType=mammary_epithelial_cell factor=CTCF\ track encTfChipPkENCFF288RFS\ 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_ctss_fwd Tc:293SlamRinderpest_12hrBr2+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_forward 0 1135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14414.13548-145I2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13548-145I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_tpm_fwd Tc:293SlamRinderpest_12hrBr2+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_forward 1 1135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14414.13548-145I2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13548-145I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1P300V0422111PkRep2 ECC1 p300 V11 2 broadPeak ECC-1 p300 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1136 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 p300 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 p300 V11 2\ subGroups view=Peaks factor=P300 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1P300V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF743FCW mammaryEpith EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in mammary_epithelial_cell from ENCODE 3 (ENCFF743FCW) 1 1136 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in mammary_epithelial_cell from ENCODE 3 (ENCFF743FCW)\ parent encTfChipPk off\ shortLabel mammaryEpith EZH2\ subGroups cellType=mammary_epithelial_cell factor=EZH2\ track encTfChipPkENCFF743FCW\ 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_ctss_rev Tc:293SlamRinderpest_12hrBr2- bigWig 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_reverse 0 1136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14414.13548-145I2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13548-145I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_tpm_rev Tc:293SlamRinderpest_12hrBr2- bigWig 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_reverse 1 1136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14414.13548-145I2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13548-145I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1P300V0422111RawRep2 ECC1 p300 V11 2 bigWig 1.000000 1781.000000 ECC-1 p300 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1137 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 p300 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 p300 V11 2\ subGroups view=RawSignal factor=P300 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1P300V0422111RawRep2\ type bigWig 1.000000 1781.000000\ encTfChipPkENCFF874DDR medlblastoma CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in medulloblastoma from ENCODE 3 (ENCFF874DDR) 1 1137 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in medulloblastoma from ENCODE 3 (ENCFF874DDR)\ parent encTfChipPk off\ shortLabel medlblastoma CTCF\ subGroups cellType=medulloblastoma factor=CTCF\ track encTfChipPkENCFF874DDR\ 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_ctss_fwd Tc:293SlamRinderpest_12hrBr3+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_forward 0 1137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14415.13549-145I3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13549-145I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_tpm_fwd Tc:293SlamRinderpest_12hrBr3+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_forward 1 1137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14415.13549-145I3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13549-145I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Pol2V0416102Dm002p1hPkRep1 ECC1 Pol2 DMSO 1 broadPeak ECC-1 Pol2 DMSO v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1138 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 Pol2 DMSO v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 Pol2 DMSO 1\ subGroups view=Peaks factor=POL2 cellType=t3ECC1 protocol=V0416102 treatment=DM002P1H rep=rep1\ track wgEncodeHaibTfbsEcc1Pol2V0416102Dm002p1hPkRep1\ type broadPeak\ encTfChipPkENCFF448MBM myotube CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in myotube from ENCODE 3 (ENCFF448MBM) 1 1138 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in myotube from ENCODE 3 (ENCFF448MBM)\ parent encTfChipPk off\ shortLabel myotube CTCF\ subGroups cellType=myotube factor=CTCF\ track encTfChipPkENCFF448MBM\ 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_ctss_rev Tc:293SlamRinderpest_12hrBr3- bigWig 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_reverse 0 1138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14415.13549-145I3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13549-145I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_tpm_rev Tc:293SlamRinderpest_12hrBr3- bigWig 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_reverse 1 1138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14415.13549-145I3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13549-145I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Pol2V0416102Dm002p1hRawRep1 ECC1 Pol2 DMSO 1 bigWig 0.296027 345.240997 ECC-1 Pol2 DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1139 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 Pol2 DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 Pol2 DMSO 1\ subGroups view=RawSignal factor=POL2 cellType=t3ECC1 protocol=V0416102 treatment=DM002P1H rep=rep1\ track wgEncodeHaibTfbsEcc1Pol2V0416102Dm002p1hRawRep1\ type bigWig 0.296027 345.240997\ encTfChipPkENCFF618DDO neuralCell CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in neural_cell from ENCODE 3 (ENCFF618DDO) 1 1139 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in neural_cell from ENCODE 3 (ENCFF618DDO)\ parent encTfChipPk off\ shortLabel neuralCell CTCF\ subGroups cellType=neural_cell factor=CTCF\ track encTfChipPkENCFF618DDO\ 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_ctss_fwd Tc:293SlamRinderpest_24hrBr1+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_forward 0 1139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14416.13550-145I4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13550-145I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_tpm_fwd Tc:293SlamRinderpest_24hrBr1+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_forward 1 1139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14416.13550-145I4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13550-145I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Pol2V0416102Dm002p1hPkRep2 ECC1 Pol2 DMSO 2 broadPeak ECC-1 Pol2 DMSO v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1140 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 Pol2 DMSO v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 Pol2 DMSO 2\ subGroups view=Peaks factor=POL2 cellType=t3ECC1 protocol=V0416102 treatment=DM002P1H rep=rep2\ track wgEncodeHaibTfbsEcc1Pol2V0416102Dm002p1hPkRep2\ type broadPeak\ encTfChipPkENCFF888JDR neuralCell EP300 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in neural_cell from ENCODE 3 (ENCFF888JDR) 1 1140 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in neural_cell from ENCODE 3 (ENCFF888JDR)\ parent encTfChipPk off\ shortLabel neuralCell EP300\ subGroups cellType=neural_cell factor=EP300\ track encTfChipPkENCFF888JDR\ 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_ctss_rev Tc:293SlamRinderpest_24hrBr1- bigWig 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_reverse 0 1140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14416.13550-145I4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13550-145I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_tpm_rev Tc:293SlamRinderpest_24hrBr1- bigWig 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_reverse 1 1140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14416.13550-145I4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13550-145I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Pol2V0416102Dm002p1hRawRep2 ECC1 Pol2 DMSO 2 bigWig 0.202408 426.877991 ECC-1 Pol2 DMSO v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1141 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 Pol2 DMSO v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 Pol2 DMSO 2\ subGroups view=RawSignal factor=POL2 cellType=t3ECC1 protocol=V0416102 treatment=DM002P1H rep=rep2\ track wgEncodeHaibTfbsEcc1Pol2V0416102Dm002p1hRawRep2\ type bigWig 0.202408 426.877991\ encTfChipPkENCFF048JWL neuralCell MXI1 narrowPeak Transcription Factor ChIP-seq Peaks of MXI1 in neural_cell from ENCODE 3 (ENCFF048JWL) 1 1141 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MXI1 in neural_cell from ENCODE 3 (ENCFF048JWL)\ parent encTfChipPk off\ shortLabel neuralCell MXI1\ subGroups cellType=neural_cell factor=MXI1\ track encTfChipPkENCFF048JWL\ 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_ctss_fwd Tc:293SlamRinderpest_24hrBr2+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_forward 0 1141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14417.13551-145I5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13551-145I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_tpm_fwd Tc:293SlamRinderpest_24hrBr2+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_forward 1 1141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14417.13551-145I5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13551-145I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Rad21V0422111PkRep1 ECC1 RAD21 V11 1 broadPeak ECC-1 RAD21 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1142 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 RAD21 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 RAD21 V11 1\ subGroups view=Peaks factor=RAD21 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Rad21V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF246HIM neuralCell RAD21 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in neural_cell from ENCODE 3 (ENCFF246HIM) 1 1142 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in neural_cell from ENCODE 3 (ENCFF246HIM)\ parent encTfChipPk off\ shortLabel neuralCell RAD21\ subGroups cellType=neural_cell factor=RAD21\ track encTfChipPkENCFF246HIM\ 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_ctss_rev Tc:293SlamRinderpest_24hrBr2- bigWig 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_reverse 0 1142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14417.13551-145I5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13551-145I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_tpm_rev Tc:293SlamRinderpest_24hrBr2- bigWig 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_reverse 1 1142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14417.13551-145I5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13551-145I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Rad21V0422111RawRep1 ECC1 RAD21 V11 1 bigWig 1.000000 1710.000000 ECC-1 RAD21 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1143 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 RAD21 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 RAD21 V11 1\ subGroups view=RawSignal factor=RAD21 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Rad21V0422111RawRep1\ type bigWig 1.000000 1710.000000\ encTfChipPkENCFF582SHF neuralCell SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in neural_cell from ENCODE 3 (ENCFF582SHF) 1 1143 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SMC3 in neural_cell from ENCODE 3 (ENCFF582SHF)\ parent encTfChipPk on\ shortLabel neuralCell SMC3\ subGroups cellType=neural_cell factor=SMC3\ track encTfChipPkENCFF582SHF\ 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_ctss_fwd Tc:293SlamRinderpest_24hrBr3+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_forward 0 1143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14418.13552-145I6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13552-145I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_tpm_fwd Tc:293SlamRinderpest_24hrBr3+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_forward 1 1143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14418.13552-145I6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13552-145I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Rad21V0422111PkRep2 ECC1 RAD21 V11 2 broadPeak ECC-1 RAD21 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1144 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 RAD21 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 RAD21 V11 2\ subGroups view=Peaks factor=RAD21 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Rad21V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF072ZEU neurlProgntr CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in neural_progenitor_cell from ENCODE 3 (ENCFF072ZEU) 1 1144 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in neural_progenitor_cell from ENCODE 3 (ENCFF072ZEU)\ parent encTfChipPk off\ shortLabel neurlProgntr CTCF\ subGroups cellType=neural_progenitor_cell factor=CTCF\ track encTfChipPkENCFF072ZEU\ 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_ctss_rev Tc:293SlamRinderpest_24hrBr3- bigWig 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_reverse 0 1144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14418.13552-145I6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13552-145I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_tpm_rev Tc:293SlamRinderpest_24hrBr3- bigWig 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_reverse 1 1144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14418.13552-145I6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13552-145I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Rad21V0422111RawRep2 ECC1 RAD21 V11 2 bigWig 1.000000 1437.000000 ECC-1 RAD21 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1145 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 RAD21 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 RAD21 V11 2\ subGroups view=RawSignal factor=RAD21 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Rad21V0422111RawRep2\ type bigWig 1.000000 1437.000000\ encTfChipPkENCFF140MVM neurlProgntr EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in neural_progenitor_cell from ENCODE 3 (ENCFF140MVM) 1 1145 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in neural_progenitor_cell from ENCODE 3 (ENCFF140MVM)\ parent encTfChipPk off\ shortLabel neurlProgntr EZH2\ subGroups cellType=neural_progenitor_cell factor=EZH2\ track encTfChipPkENCFF140MVM\ COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_ctss_fwd Tc:COBL-aRinderpest(-C)_06hrBr1+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_forward 0 1145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep1.CNhs14435.13568-146B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13568-146B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_tpm_fwd Tc:COBL-aRinderpest(-C)_06hrBr1+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_forward 1 1145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep1.CNhs14435.13568-146B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13568-146B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1SrfV0422111PkRep1 ECC1 SRF V11 1 broadPeak ECC-1 SRF v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1146 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 SRF v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 SRF V11 1\ subGroups view=Peaks factor=SRF cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1SrfV0422111PkRep1\ type broadPeak\ encTfChipPkENCFF374BNP neutrophil CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in neutrophil from ENCODE 3 (ENCFF374BNP) 1 1146 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in neutrophil from ENCODE 3 (ENCFF374BNP)\ parent encTfChipPk off\ shortLabel neutrophil CTCF\ subGroups cellType=neutrophil factor=CTCF\ track encTfChipPkENCFF374BNP\ COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_ctss_rev Tc:COBL-aRinderpest(-C)_06hrBr1- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_reverse 0 1146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep1.CNhs14435.13568-146B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13568-146B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_tpm_rev Tc:COBL-aRinderpest(-C)_06hrBr1- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_reverse 1 1146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep1.CNhs14435.13568-146B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13568-146B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1SrfV0422111RawRep1 ECC1 SRF V11 1 bigWig 1.000000 2021.000000 ECC-1 SRF v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1147 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 SRF v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 SRF V11 1\ subGroups view=RawSignal factor=SRF cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1SrfV0422111RawRep1\ type bigWig 1.000000 2021.000000\ encTfChipPkENCFF517HGL omentalFat CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF517HGL) 1 1147 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF517HGL)\ parent encTfChipPk off\ shortLabel omentalFat CTCF 1\ subGroups cellType=omental_fat_pad factor=CTCF\ track encTfChipPkENCFF517HGL\ COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_ctss_fwd Tc:COBL-aRinderpest(-C)_06hrBr2+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_forward 0 1147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep2.CNhs14436.13569-146B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13569-146B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_tpm_fwd Tc:COBL-aRinderpest(-C)_06hrBr2+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_forward 1 1147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep2.CNhs14436.13569-146B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13569-146B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1SrfV0422111PkRep2 ECC1 SRF V11 2 broadPeak ECC-1 SRF v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1148 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 SRF v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 SRF V11 2\ subGroups view=Peaks factor=SRF cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1SrfV0422111PkRep2\ type broadPeak\ encTfChipPkENCFF454PSG omentalFat CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF454PSG) 1 1148 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF454PSG)\ parent encTfChipPk off\ shortLabel omentalFat CTCF 2\ subGroups cellType=omental_fat_pad factor=CTCF\ track encTfChipPkENCFF454PSG\ COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_ctss_rev Tc:COBL-aRinderpest(-C)_06hrBr2- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_reverse 0 1148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep2.CNhs14436.13569-146B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13569-146B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_tpm_rev Tc:COBL-aRinderpest(-C)_06hrBr2- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_reverse 1 1148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep2.CNhs14436.13569-146B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13569-146B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1SrfV0422111RawRep2 ECC1 SRF V11 2 bigWig 1.000000 1623.000000 ECC-1 SRF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1149 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 SRF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 SRF V11 2\ subGroups view=RawSignal factor=SRF cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1SrfV0422111RawRep2\ type bigWig 1.000000 1623.000000\ encTfChipPkENCFF709PEA omentalFat CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF709PEA) 1 1149 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF709PEA)\ parent encTfChipPk off\ shortLabel omentalFat CTCF 3\ subGroups cellType=omental_fat_pad factor=CTCF\ track encTfChipPkENCFF709PEA\ COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_ctss_fwd Tc:COBL-aRinderpest(-C)_06hrBr3+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_forward 0 1149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep3.CNhs14437.13570-146B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13570-146B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_tpm_fwd Tc:COBL-aRinderpest(-C)_06hrBr3+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_forward 1 1149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep3.CNhs14437.13570-146B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13570-146B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Taf1V0422111PkRep1 ECC1 TAF1 V11 1 broadPeak ECC-1 TAF1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1150 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 TAF1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 TAF1 V11 1\ subGroups view=Peaks factor=TAF1 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Taf1V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF459MDC omntalFat EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF459MDC) 1 1150 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF459MDC)\ parent encTfChipPk off\ shortLabel omntalFat EP300 1\ subGroups cellType=omental_fat_pad factor=EP300\ track encTfChipPkENCFF459MDC\ COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_ctss_rev Tc:COBL-aRinderpest(-C)_06hrBr3- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_reverse 0 1150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep3.CNhs14437.13570-146B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13570-146B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_tpm_rev Tc:COBL-aRinderpest(-C)_06hrBr3- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_reverse 1 1150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep3.CNhs14437.13570-146B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13570-146B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Taf1V0422111RawRep1 ECC1 TAF1 V11 1 bigWig 1.000000 2298.000000 ECC-1 TAF1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1151 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 TAF1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 TAF1 V11 1\ subGroups view=RawSignal factor=TAF1 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Taf1V0422111RawRep1\ type bigWig 1.000000 2298.000000\ encTfChipPkENCFF240NSI omntalFat EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF240NSI) 1 1151 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF240NSI)\ parent encTfChipPk off\ shortLabel omntalFat EP300 2\ subGroups cellType=omental_fat_pad factor=EP300\ track encTfChipPkENCFF240NSI\ COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_ctss_fwd Tc:COBL-aRinderpest(-C)_12hrBr1+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_forward 0 1151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep1.CNhs14438.13571-146B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13571-146B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_tpm_fwd Tc:COBL-aRinderpest(-C)_12hrBr1+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_forward 1 1151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep1.CNhs14438.13571-146B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13571-146B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Taf1V0422111PkRep2 ECC1 TAF1 V11 2 broadPeak ECC-1 TAF1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1152 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 TAF1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 TAF1 V11 2\ subGroups view=Peaks factor=TAF1 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Taf1V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF060OVF omntalFat EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF060OVF) 1 1152 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF060OVF)\ parent encTfChipPk off\ shortLabel omntalFat EP300 3\ subGroups cellType=omental_fat_pad factor=EP300\ track encTfChipPkENCFF060OVF\ COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_ctss_rev Tc:COBL-aRinderpest(-C)_12hrBr1- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_reverse 0 1152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep1.CNhs14438.13571-146B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13571-146B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_tpm_rev Tc:COBL-aRinderpest(-C)_12hrBr1- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_reverse 1 1152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep1.CNhs14438.13571-146B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13571-146B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Taf1V0422111RawRep2 ECC1 TAF1 V11 2 bigWig 1.000000 977.000000 ECC-1 TAF1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1153 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 TAF1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 TAF1 V11 2\ subGroups view=RawSignal factor=TAF1 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Taf1V0422111RawRep2\ type bigWig 1.000000 977.000000\ encTfChipPkENCFF617XKX omntalFat EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF617XKX) 1 1153 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF617XKX)\ parent encTfChipPk off\ shortLabel omntalFat EP300 4\ subGroups cellType=omental_fat_pad factor=EP300\ track encTfChipPkENCFF617XKX\ COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_ctss_fwd Tc:COBL-aRinderpest(-C)_12hrBr2+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_forward 0 1153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep2.CNhs14439.13572-146B8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13572-146B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_tpm_fwd Tc:COBL-aRinderpest(-C)_12hrBr2+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_forward 1 1153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep2.CNhs14439.13572-146B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13572-146B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Tcf12V0422111PkRep1 ECC1 TCF12 V11 1 broadPeak ECC-1 TCF12 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1154 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 TCF12 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 TCF12 V11 1\ subGroups view=Peaks factor=TCF12 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Tcf12V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF522DLJ ovary CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in ovary from ENCODE 3 (ENCFF522DLJ) 1 1154 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in ovary from ENCODE 3 (ENCFF522DLJ)\ parent encTfChipPk on\ shortLabel ovary CTCF 1\ subGroups cellType=ovary factor=CTCF\ track encTfChipPkENCFF522DLJ\ COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_ctss_rev Tc:COBL-aRinderpest(-C)_12hrBr2- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_reverse 0 1154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep2.CNhs14439.13572-146B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13572-146B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_tpm_rev Tc:COBL-aRinderpest(-C)_12hrBr2- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_reverse 1 1154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep2.CNhs14439.13572-146B8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13572-146B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Tcf12V0422111RawRep1 ECC1 TCF12 V11 1 bigWig 1.000000 1317.000000 ECC-1 TCF12 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1155 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 TCF12 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 TCF12 V11 1\ subGroups view=RawSignal factor=TCF12 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Tcf12V0422111RawRep1\ type bigWig 1.000000 1317.000000\ encTfChipPkENCFF261BWI ovary CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in ovary from ENCODE 3 (ENCFF261BWI) 1 1155 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in ovary from ENCODE 3 (ENCFF261BWI)\ parent encTfChipPk off\ shortLabel ovary CTCF 2\ subGroups cellType=ovary factor=CTCF\ track encTfChipPkENCFF261BWI\ COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_ctss_fwd Tc:COBL-aRinderpest(-C)_12hrBr3+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_forward 0 1155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep3.CNhs14440.13573-146B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13573-146B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_tpm_fwd Tc:COBL-aRinderpest(-C)_12hrBr3+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_forward 1 1155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep3.CNhs14440.13573-146B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13573-146B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Tcf12V0422111PkRep2 ECC1 TCF12 V11 2 broadPeak ECC-1 TCF12 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1156 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 TCF12 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 TCF12 V11 2\ subGroups view=Peaks factor=TCF12 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Tcf12V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF057IJK ovary EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in ovary from ENCODE 3 (ENCFF057IJK) 1 1156 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in ovary from ENCODE 3 (ENCFF057IJK)\ parent encTfChipPk off\ shortLabel ovary EP300 1\ subGroups cellType=ovary factor=EP300\ track encTfChipPkENCFF057IJK\ COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_ctss_rev Tc:COBL-aRinderpest(-C)_12hrBr3- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_reverse 0 1156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep3.CNhs14440.13573-146B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13573-146B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_tpm_rev Tc:COBL-aRinderpest(-C)_12hrBr3- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_reverse 1 1156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep3.CNhs14440.13573-146B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13573-146B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Tcf12V0422111RawRep2 ECC1 TCF12 V11 2 bigWig 1.000000 1525.000000 ECC-1 TCF12 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1157 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 TCF12 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 TCF12 V11 2\ subGroups view=RawSignal factor=TCF12 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Tcf12V0422111RawRep2\ type bigWig 1.000000 1525.000000\ encTfChipPkENCFF934XEQ ovary EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in ovary from ENCODE 3 (ENCFF934XEQ) 1 1157 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in ovary from ENCODE 3 (ENCFF934XEQ)\ parent encTfChipPk off\ shortLabel ovary EP300 2\ subGroups cellType=ovary factor=EP300\ track encTfChipPkENCFF934XEQ\ COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_ctss_fwd Tc:COBL-aRinderpest(-C)_24hrBr1+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_forward 0 1157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep1.CNhs14441.13574-146C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13574-146C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_tpm_fwd Tc:COBL-aRinderpest(-C)_24hrBr1+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_forward 1 1157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep1.CNhs14441.13574-146C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13574-146C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Tead4sc101184V0422111PkRep1 ECC1 TEAD4 V11 1 broadPeak ECC-1 TEAD4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1158 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 TEAD4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 TEAD4 V11 1\ subGroups view=Peaks factor=TEAD4SC101184 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Tead4sc101184V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF570SMG ovary POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in ovary from ENCODE 3 (ENCFF570SMG) 1 1158 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in ovary from ENCODE 3 (ENCFF570SMG)\ parent encTfChipPk off\ shortLabel ovary POLR2A\ subGroups cellType=ovary factor=POLR2A\ track encTfChipPkENCFF570SMG\ COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_ctss_rev Tc:COBL-aRinderpest(-C)_24hrBr1- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_reverse 0 1158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep1.CNhs14441.13574-146C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13574-146C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_tpm_rev Tc:COBL-aRinderpest(-C)_24hrBr1- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_reverse 1 1158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep1.CNhs14441.13574-146C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13574-146C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Tead4sc101184V0422111RawRep1 ECC1 TEAD4 V11 1 bigWig 1.000000 1645.000000 ECC-1 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1159 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 TEAD4 V11 1\ subGroups view=RawSignal factor=TEAD4SC101184 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Tead4sc101184V0422111RawRep1\ type bigWig 1.000000 1645.000000\ encTfChipPkENCFF846FIG prostate CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in prostate_gland from ENCODE 3 (ENCFF846FIG) 1 1159 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in prostate_gland from ENCODE 3 (ENCFF846FIG)\ parent encTfChipPk off\ shortLabel prostate CTCF 1\ subGroups cellType=prostate_gland factor=CTCF\ track encTfChipPkENCFF846FIG\ COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_ctss_fwd Tc:COBL-aRinderpest(-C)_24hrBr2+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_forward 0 1159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep2.CNhs14442.13575-146C2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13575-146C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_tpm_fwd Tc:COBL-aRinderpest(-C)_24hrBr2+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_forward 1 1159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep2.CNhs14442.13575-146C2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13575-146C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Tead4sc101184V0422111PkRep2 ECC1 TEAD4 V11 2 broadPeak ECC-1 TEAD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1160 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 TEAD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 TEAD4 V11 2\ subGroups view=Peaks factor=TEAD4SC101184 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Tead4sc101184V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF899MQP prostate CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in prostate_gland from ENCODE 3 (ENCFF899MQP) 1 1160 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in prostate_gland from ENCODE 3 (ENCFF899MQP)\ parent encTfChipPk off\ shortLabel prostate CTCF 2\ subGroups cellType=prostate_gland factor=CTCF\ track encTfChipPkENCFF899MQP\ COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_ctss_rev Tc:COBL-aRinderpest(-C)_24hrBr2- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_reverse 0 1160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep2.CNhs14442.13575-146C2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13575-146C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_tpm_rev Tc:COBL-aRinderpest(-C)_24hrBr2- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_reverse 1 1160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep2.CNhs14442.13575-146C2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13575-146C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Tead4sc101184V0422111RawRep2 ECC1 TEAD4 V11 2 bigWig 1.000000 2030.000000 ECC-1 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1161 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 TEAD4 V11 2\ subGroups view=RawSignal factor=TEAD4SC101184 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Tead4sc101184V0422111RawRep2\ type bigWig 1.000000 2030.000000\ encTfChipPkENCFF852XQI prostate EP300 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in prostate_gland from ENCODE 3 (ENCFF852XQI) 1 1161 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in prostate_gland from ENCODE 3 (ENCFF852XQI)\ parent encTfChipPk off\ shortLabel prostate EP300\ subGroups cellType=prostate_gland factor=EP300\ track encTfChipPkENCFF852XQI\ COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_ctss_fwd Tc:COBL-aRinderpest(-C)_24hrBr3+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_forward 0 1161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep3.CNhs14443.13576-146C3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13576-146C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_tpm_fwd Tc:COBL-aRinderpest(-C)_24hrBr3+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_forward 1 1161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep3.CNhs14443.13576-146C3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13576-146C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Usf1V0422111PkRep1 ECC1 USF1 V11 1 broadPeak ECC-1 USF-1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1162 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 USF-1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 USF1 V11 1\ subGroups view=Peaks factor=USF1 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Usf1V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF678WCZ prostate POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in prostate_gland from ENCODE 3 (ENCFF678WCZ) 1 1162 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in prostate_gland from ENCODE 3 (ENCFF678WCZ)\ parent encTfChipPk off\ shortLabel prostate POLR2A 1\ subGroups cellType=prostate_gland factor=POLR2A\ track encTfChipPkENCFF678WCZ\ COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_ctss_rev Tc:COBL-aRinderpest(-C)_24hrBr3- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_reverse 0 1162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep3.CNhs14443.13576-146C3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13576-146C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_tpm_rev Tc:COBL-aRinderpest(-C)_24hrBr3- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_reverse 1 1162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep3.CNhs14443.13576-146C3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13576-146C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Usf1V0422111RawRep1 ECC1 USF1 V11 1 bigWig 1.000000 2111.000000 ECC-1 USF-1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1163 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 USF-1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 USF1 V11 1\ subGroups view=RawSignal factor=USF1 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Usf1V0422111RawRep1\ type bigWig 1.000000 2111.000000\ encTfChipPkENCFF389DLX prostate POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in prostate_gland from ENCODE 3 (ENCFF389DLX) 1 1163 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in prostate_gland from ENCODE 3 (ENCFF389DLX)\ parent encTfChipPk off\ shortLabel prostate POLR2A 2\ subGroups cellType=prostate_gland factor=POLR2A\ track encTfChipPkENCFF389DLX\ COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_ctss_fwd Tc:COBL-aRinderpest(-C)_48hrBr1+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_forward 0 1163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep1.CNhs14444.13577-146C4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13577-146C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_tpm_fwd Tc:COBL-aRinderpest(-C)_48hrBr1+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_forward 1 1163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep1.CNhs14444.13577-146C4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13577-146C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Usf1V0422111PkRep2 ECC1 USF1 V11 2 broadPeak ECC-1 USF-1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1164 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 USF-1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 USF1 V11 2\ subGroups view=Peaks factor=USF1 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Usf1V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF139DOR retinPgmtEpi CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in retinal_pigment_epithelial_cell from ENCODE 3 (ENCFF139DOR) 1 1164 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in retinal_pigment_epithelial_cell from ENCODE 3 (ENCFF139DOR)\ parent encTfChipPk off\ shortLabel retinPgmtEpi CTCF\ subGroups cellType=retinal_pigment_epithelial_cell factor=CTCF\ track encTfChipPkENCFF139DOR\ COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_ctss_rev Tc:COBL-aRinderpest(-C)_48hrBr1- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_reverse 0 1164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep1.CNhs14444.13577-146C4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13577-146C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_tpm_rev Tc:COBL-aRinderpest(-C)_48hrBr1- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_reverse 1 1164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep1.CNhs14444.13577-146C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13577-146C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Usf1V0422111RawRep2 ECC1 USF1 V11 2 bigWig 1.000000 2870.000000 ECC-1 USF-1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1165 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 USF-1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 USF1 V11 2\ subGroups view=RawSignal factor=USF1 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Usf1V0422111RawRep2\ type bigWig 1.000000 2870.000000\ encTfChipPkENCFF665OBP liverRLobe CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in right_lobe_of_liver from ENCODE 3 (ENCFF665OBP) 1 1165 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in right_lobe_of_liver from ENCODE 3 (ENCFF665OBP)\ parent encTfChipPk off\ shortLabel liverRLobe CTCF 2\ subGroups cellType=right_lobe_of_liver factor=CTCF\ track encTfChipPkENCFF665OBP\ COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_ctss_fwd Tc:COBL-aRinderpest(-C)_48hrBr2+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_forward 0 1165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep2.CNhs14445.13578-146C5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13578-146C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_tpm_fwd Tc:COBL-aRinderpest(-C)_48hrBr2+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_forward 1 1165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep2.CNhs14445.13578-146C5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13578-146C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Yy1sc281V0422111PkRep1 ECC1 YY1 V11 1 broadPeak ECC-1 YY1 281 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1166 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 YY1 281 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 YY1 V11 1\ subGroups view=Peaks factor=YY1SC281 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Yy1sc281V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF379TEL liverRLobe CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in right_lobe_of_liver from ENCODE 3 (ENCFF379TEL) 1 1166 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in right_lobe_of_liver from ENCODE 3 (ENCFF379TEL)\ parent encTfChipPk off\ shortLabel liverRLobe CTCF 1\ subGroups cellType=right_lobe_of_liver factor=POLR2A\ track encTfChipPkENCFF379TEL\ COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_ctss_rev Tc:COBL-aRinderpest(-C)_48hrBr2- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_reverse 0 1166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep2.CNhs14445.13578-146C5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13578-146C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_tpm_rev Tc:COBL-aRinderpest(-C)_48hrBr2- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_reverse 1 1166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep2.CNhs14445.13578-146C5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13578-146C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Yy1sc281V0422111RawRep1 ECC1 YY1 V11 1 bigWig 1.000000 1328.000000 ECC-1 YY1 281 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1167 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 YY1 281 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 YY1 V11 1\ subGroups view=RawSignal factor=YY1SC281 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Yy1sc281V0422111RawRep1\ type bigWig 1.000000 1328.000000\ encTfChipPkENCFF689ZNH sigmdColon CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF689ZNH) 1 1167 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF689ZNH)\ parent encTfChipPk off\ shortLabel sigmdColon CTCF 1\ subGroups cellType=sigmoid_colon factor=CTCF\ track encTfChipPkENCFF689ZNH\ COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_ctss_fwd Tc:COBL-aRinderpest(-C)_48hrBr3+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_forward 0 1167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep3.CNhs14446.13579-146C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13579-146C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_tpm_fwd Tc:COBL-aRinderpest(-C)_48hrBr3+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_forward 1 1167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep3.CNhs14446.13579-146C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13579-146C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Yy1sc281V0422111PkRep2 ECC1 YY1 V11 2 broadPeak ECC-1 YY1 281 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1168 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 YY1 281 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 YY1 V11 2\ subGroups view=Peaks factor=YY1SC281 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Yy1sc281V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF637HAC sigmdColon CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF637HAC) 1 1168 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF637HAC)\ parent encTfChipPk off\ shortLabel sigmdColon CTCF 2\ subGroups cellType=sigmoid_colon factor=CTCF\ track encTfChipPkENCFF637HAC\ COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_ctss_rev Tc:COBL-aRinderpest(-C)_48hrBr3- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_reverse 0 1168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep3.CNhs14446.13579-146C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13579-146C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_tpm_rev Tc:COBL-aRinderpest(-C)_48hrBr3- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_reverse 1 1168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep3.CNhs14446.13579-146C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13579-146C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Yy1sc281V0422111RawRep2 ECC1 YY1 V11 2 bigWig 1.000000 1046.000000 ECC-1 YY1 281 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1169 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 YY1 281 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 YY1 V11 2\ subGroups view=RawSignal factor=YY1SC281 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Yy1sc281V0422111RawRep2\ type bigWig 1.000000 1046.000000\ encTfChipPkENCFF324KGZ sigmdColon CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF324KGZ) 1 1169 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF324KGZ)\ parent encTfChipPk off\ shortLabel sigmdColon CTCF 3\ subGroups cellType=sigmoid_colon factor=CTCF\ track encTfChipPkENCFF324KGZ\ COBLaRinderpestInfection00hrBiolRep1_CNhs14419_ctss_fwd Tc:COBL-aRinderpest_00hrBr1+ bigWig COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_forward 0 1169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14419.13553-145I7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13553-145I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep1_CNhs14419_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep1_CNhs14419_tpm_fwd Tc:COBL-aRinderpest_00hrBr1+ bigWig COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_forward 1 1169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14419.13553-145I7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13553-145I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep1_CNhs14419_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Zbtb7aV0422111PkRep1 ECC1 ZBTB7A 1 broadPeak ECC-1 ZBTB7A v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1170 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 ZBTB7A v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 ZBTB7A 1\ subGroups view=Peaks factor=ZBTB7ASC34508 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Zbtb7aV0422111PkRep1\ type broadPeak\ encTfChipPkENCFF230HWI sigmdColon CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF230HWI) 1 1170 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF230HWI)\ parent encTfChipPk off\ shortLabel sigmdColon CTCF 4\ subGroups cellType=sigmoid_colon factor=CTCF\ track encTfChipPkENCFF230HWI\ COBLaRinderpestInfection00hrBiolRep1_CNhs14419_ctss_rev Tc:COBL-aRinderpest_00hrBr1- bigWig COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_reverse 0 1170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14419.13553-145I7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13553-145I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep1_CNhs14419_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep1_CNhs14419_tpm_rev Tc:COBL-aRinderpest_00hrBr1- bigWig COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_reverse 1 1170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14419.13553-145I7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13553-145I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep1_CNhs14419_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Zbtb7aV0422111RawRep1 ECC1 ZBTB7A 1 bigWig 1.000000 1117.000000 ECC-1 ZBTB7A v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1171 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 ZBTB7A v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 ZBTB7A 1\ subGroups view=RawSignal factor=ZBTB7ASC34508 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1Zbtb7aV0422111RawRep1\ type bigWig 1.000000 1117.000000\ encTfChipPkENCFF929YZA sigmdColon CTCF 5 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF929YZA) 1 1171 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF929YZA)\ parent encTfChipPk off\ shortLabel sigmdColon CTCF 5\ subGroups cellType=sigmoid_colon factor=CTCF\ track encTfChipPkENCFF929YZA\ COBLaRinderpestInfection00hrBiolRep2_CNhs14420_ctss_fwd Tc:COBL-aRinderpest_00hrBr2+ bigWig COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_forward 0 1171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14420.13554-145I8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13554-145I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep2_CNhs14420_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep2_CNhs14420_tpm_fwd Tc:COBL-aRinderpest_00hrBr2+ bigWig COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_forward 1 1171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14420.13554-145I8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13554-145I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep2_CNhs14420_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Zbtb7aV0422111PkRep2 ECC1 ZBTB7A 2 broadPeak ECC-1 ZBTB7A v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1172 0 0 0 127 127 127 0 0 0 regulation 1 longLabel ECC-1 ZBTB7A v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel ECC1 ZBTB7A 2\ subGroups view=Peaks factor=ZBTB7ASC34508 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Zbtb7aV0422111PkRep2\ type broadPeak\ encTfChipPkENCFF531NFE sigmdCln EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF531NFE) 1 1172 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF531NFE)\ parent encTfChipPk off\ shortLabel sigmdCln EP300 1\ subGroups cellType=sigmoid_colon factor=EP300\ track encTfChipPkENCFF531NFE\ COBLaRinderpestInfection00hrBiolRep2_CNhs14420_ctss_rev Tc:COBL-aRinderpest_00hrBr2- bigWig COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_reverse 0 1172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14420.13554-145I8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13554-145I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep2_CNhs14420_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep2_CNhs14420_tpm_rev Tc:COBL-aRinderpest_00hrBr2- bigWig COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_reverse 1 1172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14420.13554-145I8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13554-145I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep2_CNhs14420_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1Zbtb7aV0422111RawRep2 ECC1 ZBTB7A 2 bigWig 1.000000 1604.000000 ECC-1 ZBTB7A v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1173 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 ZBTB7A v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 ZBTB7A 2\ subGroups view=RawSignal factor=ZBTB7ASC34508 cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1Zbtb7aV0422111RawRep2\ type bigWig 1.000000 1604.000000\ encTfChipPkENCFF917PXT sigmdCln EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF917PXT) 1 1173 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF917PXT)\ parent encTfChipPk off\ shortLabel sigmdCln EP300 2\ subGroups cellType=sigmoid_colon factor=EP300\ track encTfChipPkENCFF917PXT\ COBLaRinderpestInfection00hrBiolRep3_CNhs14421_ctss_fwd Tc:COBL-aRinderpest_00hrBr3+ bigWig COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_forward 0 1173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14421.13555-145I9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13555-145I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep3_CNhs14421_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep3_CNhs14421_tpm_fwd Tc:COBL-aRinderpest_00hrBr3+ bigWig COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_forward 1 1173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14421.13555-145I9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13555-145I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep3_CNhs14421_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1RxlchV0416102Dm002p1hRawRep1 ECC1 RvXL DMSO 1 bigWig 0.153951 189.591003 ECC-1 Control DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1174 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 Control DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 RvXL DMSO 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3ECC1 protocol=V0416102 treatment=DM002P1H rep=rep1\ track wgEncodeHaibTfbsEcc1RxlchV0416102Dm002p1hRawRep1\ type bigWig 0.153951 189.591003\ encTfChipPkENCFF581DTH sigmdCln EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF581DTH) 1 1174 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF581DTH)\ parent encTfChipPk off\ shortLabel sigmdCln EP300 3\ subGroups cellType=sigmoid_colon factor=EP300\ track encTfChipPkENCFF581DTH\ COBLaRinderpestInfection00hrBiolRep3_CNhs14421_ctss_rev Tc:COBL-aRinderpest_00hrBr3- bigWig COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_reverse 0 1174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14421.13555-145I9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13555-145I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep3_CNhs14421_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep3_CNhs14421_tpm_rev Tc:COBL-aRinderpest_00hrBr3- bigWig COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_reverse 1 1174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14421.13555-145I9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13555-145I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep3_CNhs14421_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1RxlchV0422111RawRep1 ECC1 RvXL V11 1 bigWig 1.000000 1456.000000 ECC-1 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1175 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 RvXL V11 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsEcc1RxlchV0422111RawRep1\ type bigWig 1.000000 1456.000000\ encTfChipPkENCFF885NNA sigmdCln EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF885NNA) 1 1175 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF885NNA)\ parent encTfChipPk off\ shortLabel sigmdCln EP300 4\ subGroups cellType=sigmoid_colon factor=EP300\ track encTfChipPkENCFF885NNA\ COBLaRinderpestInfection06hrBiolRep1_CNhs14422_ctss_fwd Tc:COBL-aRinderpest_06hrBr1+ bigWig COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_forward 0 1175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14422.13556-146A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13556-146A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep1_CNhs14422_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep1_CNhs14422_tpm_fwd Tc:COBL-aRinderpest_06hrBr1+ bigWig COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_forward 1 1175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14422.13556-146A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13556-146A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep1_CNhs14422_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsEcc1RxlchV0422111RawRep2 ECC1 RvXL V11 2 bigWig 1.000000 2142.000000 ECC-1 Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1176 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ECC-1 Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel ECC1 RvXL V11 2\ subGroups view=RawSignal factor=zRXLCH cellType=t3ECC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsEcc1RxlchV0422111RawRep2\ type bigWig 1.000000 2142.000000\ encTfChipPkENCFF207KQM sigmdCln POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF207KQM) 1 1176 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF207KQM)\ parent encTfChipPk off\ shortLabel sigmdCln POLR2A 1\ subGroups cellType=sigmoid_colon factor=POLR2A\ track encTfChipPkENCFF207KQM\ COBLaRinderpestInfection06hrBiolRep1_CNhs14422_ctss_rev Tc:COBL-aRinderpest_06hrBr1- bigWig COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_reverse 0 1176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14422.13556-146A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13556-146A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep1_CNhs14422_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep1_CNhs14422_tpm_rev Tc:COBL-aRinderpest_06hrBr1- bigWig COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_reverse 1 1176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14422.13556-146A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13556-146A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep1_CNhs14422_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pax5c20V0416101PkRep1 GM91 PAX5 V101 1 broadPeak GM12891 PAX5-C20 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1177 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 PAX5-C20 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM91 PAX5 V101 1\ subGroups view=Peaks factor=PAX5C20 cellType=t3GM12891 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12891Pax5c20V0416101PkRep1\ type broadPeak\ encTfChipPkENCFF534MPD sigmdCln POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF534MPD) 1 1177 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF534MPD)\ parent encTfChipPk off\ shortLabel sigmdCln POLR2A 2\ subGroups cellType=sigmoid_colon factor=POLR2A\ track encTfChipPkENCFF534MPD\ COBLaRinderpestInfection06hrBiolRep2_CNhs14423_ctss_fwd Tc:COBL-aRinderpest_06hrBr2+ bigWig COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_forward 0 1177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14423.13557-146A2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13557-146A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep2_CNhs14423_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep2_CNhs14423_tpm_fwd Tc:COBL-aRinderpest_06hrBr2+ bigWig COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_forward 1 1177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14423.13557-146A2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13557-146A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep2_CNhs14423_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pax5c20V0416101RawRep1 GM91 PAX5 V101 1 bigWig 0.337796 198.033005 GM12891 PAX5-C20 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1178 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 PAX5-C20 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM91 PAX5 V101 1\ subGroups view=RawSignal factor=PAX5C20 cellType=t3GM12891 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12891Pax5c20V0416101RawRep1\ type bigWig 0.337796 198.033005\ encTfChipPkENCFF844HAN sigmdCln POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF844HAN) 1 1178 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF844HAN)\ parent encTfChipPk off\ shortLabel sigmdCln POLR2A 3\ subGroups cellType=sigmoid_colon factor=POLR2A\ track encTfChipPkENCFF844HAN\ COBLaRinderpestInfection06hrBiolRep2_CNhs14423_ctss_rev Tc:COBL-aRinderpest_06hrBr2- bigWig COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_reverse 0 1178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14423.13557-146A2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13557-146A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep2_CNhs14423_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep2_CNhs14423_tpm_rev Tc:COBL-aRinderpest_06hrBr2- bigWig COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_reverse 1 1178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14423.13557-146A2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13557-146A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep2_CNhs14423_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pax5c20V0416101PkRep2 GM91 PAX5 V101 2 broadPeak GM12891 PAX5-C20 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1179 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 PAX5-C20 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM91 PAX5 V101 2\ subGroups view=Peaks factor=PAX5C20 cellType=t3GM12891 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12891Pax5c20V0416101PkRep2\ type broadPeak\ encTfChipPkENCFF174RCV sigmdCln POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF174RCV) 1 1179 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF174RCV)\ parent encTfChipPk off\ shortLabel sigmdCln POLR2A 4\ subGroups cellType=sigmoid_colon factor=POLR2A\ track encTfChipPkENCFF174RCV\ COBLaRinderpestInfection06hrBiolRep3_CNhs14424_ctss_fwd Tc:COBL-aRinderpest_06hrBr3+ bigWig COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_forward 0 1179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14424.13558-146A3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13558-146A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep3_CNhs14424_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep3_CNhs14424_tpm_fwd Tc:COBL-aRinderpest_06hrBr3+ bigWig COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_forward 1 1179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14424.13558-146A3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13558-146A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep3_CNhs14424_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pax5c20V0416101RawRep2 GM91 PAX5 V101 2 bigWig 0.310065 99.995796 GM12891 PAX5-C20 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1180 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 PAX5-C20 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM91 PAX5 V101 2\ subGroups view=RawSignal factor=PAX5C20 cellType=t3GM12891 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12891Pax5c20V0416101RawRep2\ type bigWig 0.310065 99.995796\ encTfChipPkENCFF307VSP sigmdCln POLR2A 5 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF307VSP) 1 1180 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF307VSP)\ parent encTfChipPk off\ shortLabel sigmdCln POLR2A 5\ subGroups cellType=sigmoid_colon factor=POLR2A\ track encTfChipPkENCFF307VSP\ COBLaRinderpestInfection06hrBiolRep3_CNhs14424_ctss_rev Tc:COBL-aRinderpest_06hrBr3- bigWig COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_reverse 0 1180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14424.13558-146A3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13558-146A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep3_CNhs14424_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep3_CNhs14424_tpm_rev Tc:COBL-aRinderpest_06hrBr3- bigWig COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_reverse 1 1180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14424.13558-146A3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13558-146A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep3_CNhs14424_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pol2Pcr1xPkRep1 GM91 Pol2 PCR1 1 broadPeak GM12891 Pol2 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1181 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 Pol2 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM91 Pol2 PCR1 1\ subGroups view=Peaks factor=POL2 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12891Pol2Pcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF586TYX smoothMuscle CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in smooth_muscle_cell from ENCODE 3 (ENCFF586TYX) 1 1181 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in smooth_muscle_cell from ENCODE 3 (ENCFF586TYX)\ parent encTfChipPk off\ shortLabel smoothMuscle CTCF\ subGroups cellType=smooth_muscle_cell factor=CTCF\ track encTfChipPkENCFF586TYX\ COBLaRinderpestInfection12hrBiolRep1_CNhs14425_ctss_fwd Tc:COBL-aRinderpest_12hrBr1+ bigWig COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_forward 0 1181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14425.13559-146A4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13559-146A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep1_CNhs14425_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep1_CNhs14425_tpm_fwd Tc:COBL-aRinderpest_12hrBr1+ bigWig COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_forward 1 1181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14425.13559-146A4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13559-146A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep1_CNhs14425_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pol2Pcr1xRawRep1 GM91 Pol2 PCR1 1 bigWig 0.158122 467.566010 GM12891 Pol2 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1182 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 Pol2 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM91 Pol2 PCR1 1\ subGroups view=RawSignal factor=POL2 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12891Pol2Pcr1xRawRep1\ type bigWig 0.158122 467.566010\ encTfChipPkENCFF396TUD spleen CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF396TUD) 1 1182 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF396TUD)\ parent encTfChipPk off\ shortLabel spleen CTCF 1\ subGroups cellType=spleen factor=CTCF\ track encTfChipPkENCFF396TUD\ COBLaRinderpestInfection12hrBiolRep1_CNhs14425_ctss_rev Tc:COBL-aRinderpest_12hrBr1- bigWig COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_reverse 0 1182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14425.13559-146A4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13559-146A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep1_CNhs14425_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep1_CNhs14425_tpm_rev Tc:COBL-aRinderpest_12hrBr1- bigWig COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_reverse 1 1182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14425.13559-146A4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13559-146A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep1_CNhs14425_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pol2Pcr1xPkRep2 GM91 Pol2 PCR1 2 broadPeak GM12891 Pol2 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1183 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 Pol2 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM91 Pol2 PCR1 2\ subGroups view=Peaks factor=POL2 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12891Pol2Pcr1xPkRep2\ type broadPeak\ encTfChipPkENCFF881YDR spleen CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF881YDR) 1 1183 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF881YDR)\ parent encTfChipPk off\ shortLabel spleen CTCF 2\ subGroups cellType=spleen factor=CTCF\ track encTfChipPkENCFF881YDR\ COBLaRinderpestInfection12hrBiolRep2_CNhs14426_ctss_fwd Tc:COBL-aRinderpest_12hrBr2+ bigWig COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_forward 0 1183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14426.13560-146A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13560-146A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep2_CNhs14426_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep2_CNhs14426_tpm_fwd Tc:COBL-aRinderpest_12hrBr2+ bigWig COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_forward 1 1183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14426.13560-146A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13560-146A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep2_CNhs14426_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pol2Pcr1xRawRep2 GM91 Pol2 PCR1 2 bigWig 0.177341 224.912003 GM12891 Pol2 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1184 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 Pol2 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM91 Pol2 PCR1 2\ subGroups view=RawSignal factor=POL2 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12891Pol2Pcr1xRawRep2\ type bigWig 0.177341 224.912003\ encTfChipPkENCFF741BED spleen CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF741BED) 1 1184 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF741BED)\ parent encTfChipPk off\ shortLabel spleen CTCF 3\ subGroups cellType=spleen factor=CTCF\ track encTfChipPkENCFF741BED\ COBLaRinderpestInfection12hrBiolRep2_CNhs14426_ctss_rev Tc:COBL-aRinderpest_12hrBr2- bigWig COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_reverse 0 1184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14426.13560-146A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13560-146A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep2_CNhs14426_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep2_CNhs14426_tpm_rev Tc:COBL-aRinderpest_12hrBr2- bigWig COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_reverse 1 1184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14426.13560-146A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13560-146A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep2_CNhs14426_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pol24h8Pcr1xPkRep1 GM91 Pol2-4H8 PCR1 1 broadPeak GM12891 Pol2-4H8 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1185 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 Pol2-4H8 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM91 Pol2-4H8 PCR1 1\ subGroups view=Peaks factor=POL24H8 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12891Pol24h8Pcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF003YLJ spleen CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF003YLJ) 1 1185 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF003YLJ)\ parent encTfChipPk off\ shortLabel spleen CTCF 4\ subGroups cellType=spleen factor=CTCF\ track encTfChipPkENCFF003YLJ\ COBLaRinderpestInfection12hrBiolRep3_CNhs14427_ctss_fwd Tc:COBL-aRinderpest_12hrBr3+ bigWig COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_forward 0 1185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14427.13561-146A6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13561-146A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep3_CNhs14427_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep3_CNhs14427_tpm_fwd Tc:COBL-aRinderpest_12hrBr3+ bigWig COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_forward 1 1185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14427.13561-146A6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13561-146A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep3_CNhs14427_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pol24h8Pcr1xRawRep1 GM91 Pol2-4H8 PCR1 1 bigWig 0.209765 439.770996 GM12891 Pol2-4H8 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1186 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 Pol2-4H8 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM91 Pol2-4H8 PCR1 1\ subGroups view=RawSignal factor=POL24H8 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12891Pol24h8Pcr1xRawRep1\ type bigWig 0.209765 439.770996\ encTfChipPkENCFF459AHK spleen CTCF 5 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF459AHK) 1 1186 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF459AHK)\ parent encTfChipPk off\ shortLabel spleen CTCF 5\ subGroups cellType=spleen factor=CTCF\ track encTfChipPkENCFF459AHK\ COBLaRinderpestInfection12hrBiolRep3_CNhs14427_ctss_rev Tc:COBL-aRinderpest_12hrBr3- bigWig COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_reverse 0 1186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14427.13561-146A6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13561-146A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep3_CNhs14427_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep3_CNhs14427_tpm_rev Tc:COBL-aRinderpest_12hrBr3- bigWig COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_reverse 1 1186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14427.13561-146A6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13561-146A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep3_CNhs14427_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pol24h8Pcr1xPkRep2 GM91 Pol2-4H8 PCR1 2 broadPeak GM12891 Pol2-4H8 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1187 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 Pol2-4H8 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM91 Pol2-4H8 PCR1 2\ subGroups view=Peaks factor=POL24H8 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12891Pol24h8Pcr1xPkRep2\ type broadPeak\ encTfChipPkENCFF991SQZ spleen POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF991SQZ) 1 1187 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF991SQZ)\ parent encTfChipPk off\ shortLabel spleen POLR2A 1\ subGroups cellType=spleen factor=POLR2A\ track encTfChipPkENCFF991SQZ\ COBLaRinderpestInfection24hrBiolRep1_CNhs14428_ctss_fwd Tc:COBL-aRinderpest_24hrBr1+ bigWig COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_forward 0 1187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14428.13562-146A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13562-146A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep1_CNhs14428_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep1_CNhs14428_tpm_fwd Tc:COBL-aRinderpest_24hrBr1+ bigWig COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_forward 1 1187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14428.13562-146A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13562-146A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep1_CNhs14428_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pol24h8Pcr1xRawRep2 GM91 Pol2-4H8 PCR1 2 bigWig 0.173227 200.164001 GM12891 Pol2-4H8 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1188 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 Pol2-4H8 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM91 Pol2-4H8 PCR1 2\ subGroups view=RawSignal factor=POL24H8 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12891Pol24h8Pcr1xRawRep2\ type bigWig 0.173227 200.164001\ encTfChipPkENCFF423BKD spleen POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF423BKD) 1 1188 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF423BKD)\ parent encTfChipPk off\ shortLabel spleen POLR2A 2\ subGroups cellType=spleen factor=POLR2A\ track encTfChipPkENCFF423BKD\ COBLaRinderpestInfection24hrBiolRep1_CNhs14428_ctss_rev Tc:COBL-aRinderpest_24hrBr1- bigWig COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_reverse 0 1188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14428.13562-146A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13562-146A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep1_CNhs14428_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep1_CNhs14428_tpm_rev Tc:COBL-aRinderpest_24hrBr1- bigWig COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_reverse 1 1188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14428.13562-146A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13562-146A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep1_CNhs14428_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pou2f2Pcr1xPkRep1 GM91 POU2F2 1 broadPeak GM12891 POU2F2 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1189 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 POU2F2 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM91 POU2F2 1\ subGroups view=Peaks factor=POU2F2 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12891Pou2f2Pcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF637KHE spleen POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF637KHE) 1 1189 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF637KHE)\ parent encTfChipPk off\ shortLabel spleen POLR2A 3\ subGroups cellType=spleen factor=POLR2A\ track encTfChipPkENCFF637KHE\ COBLaRinderpestInfection24hrBiolRep2_CNhs14429_ctss_fwd Tc:COBL-aRinderpest_24hrBr2+ bigWig COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_forward 0 1189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14429.13563-146A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13563-146A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep2_CNhs14429_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep2_CNhs14429_tpm_fwd Tc:COBL-aRinderpest_24hrBr2+ bigWig COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_forward 1 1189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14429.13563-146A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13563-146A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep2_CNhs14429_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pou2f2Pcr1xRawRep1 GM91 POU2F2 1 bigWig 0.066188 118.774002 GM12891 POU2F2 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1190 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 POU2F2 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM91 POU2F2 1\ subGroups view=RawSignal factor=POU2F2 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12891Pou2f2Pcr1xRawRep1\ type bigWig 0.066188 118.774002\ encTfChipPkENCFF799TEQ spleen POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF799TEQ) 1 1190 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF799TEQ)\ parent encTfChipPk off\ shortLabel spleen POLR2A 4\ subGroups cellType=spleen factor=POLR2A\ track encTfChipPkENCFF799TEQ\ COBLaRinderpestInfection24hrBiolRep2_CNhs14429_ctss_rev Tc:COBL-aRinderpest_24hrBr2- bigWig COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_reverse 0 1190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14429.13563-146A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13563-146A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep2_CNhs14429_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep2_CNhs14429_tpm_rev Tc:COBL-aRinderpest_24hrBr2- bigWig COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_reverse 1 1190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14429.13563-146A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13563-146A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep2_CNhs14429_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pou2f2Pcr1xPkRep2 GM91 POU2F2 2 broadPeak GM12891 POU2F2 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1191 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 POU2F2 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM91 POU2F2 2\ subGroups view=Peaks factor=POU2F2 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12891Pou2f2Pcr1xPkRep2\ type broadPeak\ encTfChipPkENCFF703CWY stomach CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF703CWY) 1 1191 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF703CWY)\ parent encTfChipPk off\ shortLabel stomach CTCF 1\ subGroups cellType=stomach factor=CTCF\ track encTfChipPkENCFF703CWY\ COBLaRinderpestInfection24hrBiolRep3_CNhs14430_ctss_fwd Tc:COBL-aRinderpest_24hrBr3+ bigWig COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_forward 0 1191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14430.13564-146A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13564-146A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep3_CNhs14430_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep3_CNhs14430_tpm_fwd Tc:COBL-aRinderpest_24hrBr3+ bigWig COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_forward 1 1191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14430.13564-146A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13564-146A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep3_CNhs14430_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pou2f2Pcr1xRawRep2 GM91 POU2F2 2 bigWig 0.191749 145.681000 GM12891 POU2F2 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1192 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 POU2F2 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM91 POU2F2 2\ subGroups view=RawSignal factor=POU2F2 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12891Pou2f2Pcr1xRawRep2\ type bigWig 0.191749 145.681000\ encTfChipPkENCFF560VSK stomach CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF560VSK) 1 1192 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF560VSK)\ parent encTfChipPk off\ shortLabel stomach CTCF 2\ subGroups cellType=stomach factor=CTCF\ track encTfChipPkENCFF560VSK\ COBLaRinderpestInfection24hrBiolRep3_CNhs14430_ctss_rev Tc:COBL-aRinderpest_24hrBr3- bigWig COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_reverse 0 1192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14430.13564-146A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13564-146A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep3_CNhs14430_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep3_CNhs14430_tpm_rev Tc:COBL-aRinderpest_24hrBr3- bigWig COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_reverse 1 1192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14430.13564-146A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13564-146A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep3_CNhs14430_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pu1Pcr1xPkRep1 GM91 PU.1 PCR1 1 broadPeak GM12891 PU.1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1193 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 PU.1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM91 PU.1 PCR1 1\ subGroups view=Peaks factor=PU1 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12891Pu1Pcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF828UBR stomach CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF828UBR) 1 1193 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF828UBR)\ parent encTfChipPk off\ shortLabel stomach CTCF 3\ subGroups cellType=stomach factor=CTCF\ track encTfChipPkENCFF828UBR\ COBLaRinderpestInfection48hrBiolRep1_CNhs14431_ctss_fwd Tc:COBL-aRinderpest_48hrBr1+ bigWig COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_forward 0 1193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep1.CNhs14431.13565-146B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13565-146B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep1_CNhs14431_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep1_CNhs14431_tpm_fwd Tc:COBL-aRinderpest_48hrBr1+ bigWig COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_forward 1 1193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep1.CNhs14431.13565-146B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13565-146B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep1_CNhs14431_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pu1Pcr1xRawRep1 GM91 PU.1 PCR1 1 bigWig 0.135720 121.571999 GM12891 PU.1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1194 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 PU.1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM91 PU.1 PCR1 1\ subGroups view=RawSignal factor=PU1 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12891Pu1Pcr1xRawRep1\ type bigWig 0.135720 121.571999\ encTfChipPkENCFF039SAY stomach CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF039SAY) 1 1194 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF039SAY)\ parent encTfChipPk off\ shortLabel stomach CTCF 4\ subGroups cellType=stomach factor=CTCF\ track encTfChipPkENCFF039SAY\ COBLaRinderpestInfection48hrBiolRep1_CNhs14431_ctss_rev Tc:COBL-aRinderpest_48hrBr1- bigWig COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_reverse 0 1194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep1.CNhs14431.13565-146B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13565-146B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep1_CNhs14431_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep1_CNhs14431_tpm_rev Tc:COBL-aRinderpest_48hrBr1- bigWig COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_reverse 1 1194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep1.CNhs14431.13565-146B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13565-146B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep1_CNhs14431_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pu1Pcr1xPkRep2 GM91 PU.1 PCR1 2 broadPeak GM12891 PU.1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1195 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 PU.1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM91 PU.1 PCR1 2\ subGroups view=Peaks factor=PU1 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12891Pu1Pcr1xPkRep2\ type broadPeak\ encTfChipPkENCFF243XHX stomach EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF243XHX) 1 1195 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF243XHX)\ parent encTfChipPk off\ shortLabel stomach EP300 1\ subGroups cellType=stomach factor=EP300\ track encTfChipPkENCFF243XHX\ COBLaRinderpestInfection48hrBiolRep2_CNhs14432_ctss_fwd Tc:COBL-aRinderpest_48hrBr2+ bigWig COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_forward 0 1195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep2.CNhs14432.13566-146B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13566-146B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep2_CNhs14432_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep2_CNhs14432_tpm_fwd Tc:COBL-aRinderpest_48hrBr2+ bigWig COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_forward 1 1195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep2.CNhs14432.13566-146B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13566-146B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep2_CNhs14432_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Pu1Pcr1xRawRep2 GM91 PU.1 PCR1 2 bigWig 0.177158 148.768997 GM12891 PU.1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1196 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 PU.1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM91 PU.1 PCR1 2\ subGroups view=RawSignal factor=PU1 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12891Pu1Pcr1xRawRep2\ type bigWig 0.177158 148.768997\ encTfChipPkENCFF408PSW stomach EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF408PSW) 1 1196 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF408PSW)\ parent encTfChipPk off\ shortLabel stomach EP300 2\ subGroups cellType=stomach factor=EP300\ track encTfChipPkENCFF408PSW\ COBLaRinderpestInfection48hrBiolRep2_CNhs14432_ctss_rev Tc:COBL-aRinderpest_48hrBr2- bigWig COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_reverse 0 1196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep2.CNhs14432.13566-146B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13566-146B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep2_CNhs14432_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep2_CNhs14432_tpm_rev Tc:COBL-aRinderpest_48hrBr2- bigWig COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_reverse 1 1196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep2.CNhs14432.13566-146B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13566-146B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep2_CNhs14432_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Taf1Pcr1xPkRep1 GM91 TAF1 PCR1 1 broadPeak GM12891 TAF1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1197 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 TAF1 PCR1x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM91 TAF1 PCR1 1\ subGroups view=Peaks factor=TAF1 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12891Taf1Pcr1xPkRep1\ type broadPeak\ encTfChipPkENCFF887XGB stomach EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF887XGB) 1 1197 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF887XGB)\ parent encTfChipPk off\ shortLabel stomach EP300 3\ subGroups cellType=stomach factor=EP300\ track encTfChipPkENCFF887XGB\ COBLaRinderpestInfection48hrBiolRep3_CNhs14434_ctss_fwd Tc:COBL-aRinderpest_48hrBr3+ bigWig COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_forward 0 1197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep3.CNhs14434.13567-146B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13567-146B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep3_CNhs14434_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep3_CNhs14434_tpm_fwd Tc:COBL-aRinderpest_48hrBr3+ bigWig COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_forward 1 1197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep3.CNhs14434.13567-146B3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13567-146B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep3_CNhs14434_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Taf1Pcr1xRawRep1 GM91 TAF1 PCR1 1 bigWig 0.125512 183.593002 GM12891 TAF1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1198 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 TAF1 PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM91 TAF1 PCR1 1\ subGroups view=RawSignal factor=TAF1 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12891Taf1Pcr1xRawRep1\ type bigWig 0.125512 183.593002\ encTfChipPkENCFF168HOV stomach POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF168HOV) 1 1198 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF168HOV)\ parent encTfChipPk off\ shortLabel stomach POLR2A 1\ subGroups cellType=stomach factor=POLR2A\ track encTfChipPkENCFF168HOV\ COBLaRinderpestInfection48hrBiolRep3_CNhs14434_ctss_rev Tc:COBL-aRinderpest_48hrBr3- bigWig COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_reverse 0 1198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep3.CNhs14434.13567-146B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13567-146B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep3_CNhs14434_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep3_CNhs14434_tpm_rev Tc:COBL-aRinderpest_48hrBr3- bigWig COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_reverse 1 1198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep3.CNhs14434.13567-146B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13567-146B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep3_CNhs14434_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsGm12891Taf1Pcr1xPkRep2 GM91 TAF1 PCR1 2 broadPeak GM12891 TAF1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1199 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 TAF1 PCR1x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM91 TAF1 PCR1 2\ subGroups view=Peaks factor=TAF1 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12891Taf1Pcr1xPkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_forward 0 1199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep1%20%28A1%20T0%29.CNhs11918.12662-134I7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12662-134I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_forward 1 1199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep1%20%28A1%20T0%29.CNhs11918.12662-134I7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12662-134I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF849CHG stomach POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF849CHG) 1 1199 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF849CHG)\ parent encTfChipPk off\ shortLabel stomach POLR2A 2\ subGroups cellType=stomach factor=POLR2A\ track encTfChipPkENCFF849CHG\ wgEncodeHaibTfbsGm12891Taf1Pcr1xRawRep2 GM91 TAF1 PCR1 2 bigWig 0.183743 174.326004 GM12891 TAF1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1200 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 TAF1 PCR1x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM91 TAF1 PCR1 2\ subGroups view=RawSignal factor=TAF1 cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12891Taf1Pcr1xRawRep2\ type bigWig 0.183743 174.326004\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_ctss_rev Saos-2W/AscorbicAcidBgp_00hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_reverse 0 1200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep1%20%28A1%20T0%29.CNhs11918.12662-134I7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12662-134I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_tpm_rev Saos-2W/AscorbicAcidBgp_00hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_reverse 1 1200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep1%20%28A1%20T0%29.CNhs11918.12662-134I7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12662-134I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF957WEQ stomach POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF957WEQ) 1 1200 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF957WEQ)\ parent encTfChipPk off\ shortLabel stomach POLR2A 3\ subGroups cellType=stomach factor=POLR2A\ track encTfChipPkENCFF957WEQ\ wgEncodeHaibTfbsGm12891Yy1sc281V0416101PkRep1 GM91 YY1 V101 1 broadPeak GM12891 YY1 281 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1201 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 YY1 281 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM91 YY1 V101 1\ subGroups view=Peaks factor=YY1SC281 cellType=t3GM12891 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12891Yy1sc281V0416101PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_forward 0 1201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep2%20%28A2%20T0%29.CNhs12859.12760-136B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12760-136B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_forward 1 1201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep2%20%28A2%20T0%29.CNhs12859.12760-136B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12760-136B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF874HRJ stomach POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF874HRJ) 1 1201 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF874HRJ)\ parent encTfChipPk off\ shortLabel stomach POLR2A 4\ subGroups cellType=stomach factor=POLR2A\ track encTfChipPkENCFF874HRJ\ wgEncodeHaibTfbsGm12891Yy1sc281V0416101RawRep1 GM91 YY1 V101 1 bigWig 0.235814 135.003998 GM12891 YY1 281 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1202 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 YY1 281 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM91 YY1 V101 1\ subGroups view=RawSignal factor=YY1SC281 cellType=t3GM12891 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12891Yy1sc281V0416101RawRep1\ type bigWig 0.235814 135.003998\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_ctss_rev Saos-2W/AscorbicAcidBgp_00hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_reverse 0 1202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep2%20%28A2%20T0%29.CNhs12859.12760-136B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12760-136B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_tpm_rev Saos-2W/AscorbicAcidBgp_00hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_reverse 1 1202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep2%20%28A2%20T0%29.CNhs12859.12760-136B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12760-136B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF973ISL subcutAdip CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF973ISL) 1 1202 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF973ISL)\ parent encTfChipPk off\ shortLabel subcutAdip CTCF 1\ subGroups cellType=subcutaneous_adipose_tissue factor=CTCF\ track encTfChipPkENCFF973ISL\ wgEncodeHaibTfbsGm12891Yy1sc281V0416101PkRep2 GM91 YY1 V101 2 broadPeak GM12891 YY1 281 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1203 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12891 YY1 281 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM91 YY1 V101 2\ subGroups view=Peaks factor=YY1SC281 cellType=t3GM12891 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12891Yy1sc281V0416101PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_forward 0 1203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep3%20%28A3%20T0%29.CNhs12952.12858-137D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12858-137D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_forward 1 1203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep3%20%28A3%20T0%29.CNhs12952.12858-137D5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12858-137D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF051USR subcutAdip CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF051USR) 1 1203 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF051USR)\ parent encTfChipPk off\ shortLabel subcutAdip CTCF 2\ subGroups cellType=subcutaneous_adipose_tissue factor=CTCF\ track encTfChipPkENCFF051USR\ wgEncodeHaibTfbsGm12891Yy1sc281V0416101RawRep2 GM91 YY1 V101 2 bigWig 0.255700 532.112000 GM12891 YY1 281 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1204 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 YY1 281 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM91 YY1 V101 2\ subGroups view=RawSignal factor=YY1SC281 cellType=t3GM12891 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12891Yy1sc281V0416101RawRep2\ type bigWig 0.255700 532.112000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_ctss_rev Saos-2W/AscorbicAcidBgp_00hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_reverse 0 1204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep3%20%28A3%20T0%29.CNhs12952.12858-137D5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12858-137D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_tpm_rev Saos-2W/AscorbicAcidBgp_00hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_reverse 1 1204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep3%20%28A3%20T0%29.CNhs12952.12858-137D5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12858-137D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF570FPH subcutAdp EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF570FPH) 1 1204 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF570FPH)\ parent encTfChipPk off\ shortLabel subcutAdp EP300 1\ subGroups cellType=subcutaneous_adipose_tissue factor=EP300\ track encTfChipPkENCFF570FPH\ wgEncodeHaibTfbsGm12891RxlchPcr1xRawRep1 GM91 RvXL PCR1 1 bigWig 0.159233 195.537994 GM12891 Control PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1205 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 Control PCR1x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM91 RvXL PCR1 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3GM12891 protocol=PCR1X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12891RxlchPcr1xRawRep1\ type bigWig 0.159233 195.537994\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_forward 0 1205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep1%20%28A1%20T1%29.CNhs12381.12663-134I8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12663-134I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_forward 1 1205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep1%20%28A1%20T1%29.CNhs12381.12663-134I8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12663-134I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF109PJK subcutAdp EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF109PJK) 1 1205 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF109PJK)\ parent encTfChipPk off\ shortLabel subcutAdp EP300 2\ subGroups cellType=subcutaneous_adipose_tissue factor=EP300\ track encTfChipPkENCFF109PJK\ wgEncodeHaibTfbsGm12891RxlchV0416101RawRep1 GM91 RvXL V101 1 bigWig 0.166398 172.763000 GM12891 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1206 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12891 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM91 RvXL V101 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3GM12891 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12891RxlchV0416101RawRep1\ type bigWig 0.166398 172.763000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_ctss_rev Saos-2W/AscorbicAcidBgp_00hr15minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_reverse 0 1206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep1%20%28A1%20T1%29.CNhs12381.12663-134I8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12663-134I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_tpm_rev Saos-2W/AscorbicAcidBgp_00hr15minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_reverse 1 1206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep1%20%28A1%20T1%29.CNhs12381.12663-134I8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12663-134I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF269VDY subcutAdp EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF269VDY) 1 1206 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF269VDY)\ parent encTfChipPk off\ shortLabel subcutAdp EP300 3\ subGroups cellType=subcutaneous_adipose_tissue factor=EP300\ track encTfChipPkENCFF269VDY\ wgEncodeHaibTfbsGm12892Pax5c20V0416101PkRep1 GM92 PAX5 V101 1 broadPeak GM12892 PAX5-C20 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1207 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 PAX5-C20 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM92 PAX5 V101 1\ subGroups view=Peaks factor=PAX5C20 cellType=t3GM12892 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12892Pax5c20V0416101PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_forward 0 1207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep2%20%28A2%20T1%29.CNhs12860.12761-136B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12761-136B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_forward 1 1207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep2%20%28A2%20T1%29.CNhs12860.12761-136B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12761-136B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF793HCV subcutAdp EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF793HCV) 1 1207 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF793HCV)\ parent encTfChipPk off\ shortLabel subcutAdp EP300 4\ subGroups cellType=subcutaneous_adipose_tissue factor=EP300\ track encTfChipPkENCFF793HCV\ wgEncodeHaibTfbsGm12892Pax5c20V0416101RawRep1 GM92 PAX5 V101 1 bigWig 0.279111 141.649002 GM12892 PAX5-C20 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1208 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12892 PAX5-C20 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM92 PAX5 V101 1\ subGroups view=RawSignal factor=PAX5C20 cellType=t3GM12892 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12892Pax5c20V0416101RawRep1\ type bigWig 0.279111 141.649002\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_ctss_rev Saos-2W/AscorbicAcidBgp_00hr15minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_reverse 0 1208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep2%20%28A2%20T1%29.CNhs12860.12761-136B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12761-136B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_tpm_rev Saos-2W/AscorbicAcidBgp_00hr15minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_reverse 1 1208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep2%20%28A2%20T1%29.CNhs12860.12761-136B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12761-136B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF148LAV suprpbSkin CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in suprapubic_skin from ENCODE 3 (ENCFF148LAV) 1 1208 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in suprapubic_skin from ENCODE 3 (ENCFF148LAV)\ parent encTfChipPk off\ shortLabel suprpbSkin CTCF 1\ subGroups cellType=suprapubic_skin factor=CTCF\ track encTfChipPkENCFF148LAV\ wgEncodeHaibTfbsGm12892Pax5c20V0416101PkRep2 GM92 PAX5 V101 2 broadPeak GM12892 PAX5-C20 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1209 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 PAX5-C20 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM92 PAX5 V101 2\ subGroups view=Peaks factor=PAX5C20 cellType=t3GM12892 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12892Pax5c20V0416101PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_forward 0 1209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep3%20%28A3%20T1%29.CNhs12877.12859-137D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12859-137D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_forward 1 1209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep3%20%28A3%20T1%29.CNhs12877.12859-137D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12859-137D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF971ILA suprpbSkin CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in suprapubic_skin from ENCODE 3 (ENCFF971ILA) 1 1209 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in suprapubic_skin from ENCODE 3 (ENCFF971ILA)\ parent encTfChipPk off\ shortLabel suprpbSkin CTCF 2\ subGroups cellType=suprapubic_skin factor=CTCF\ track encTfChipPkENCFF971ILA\ wgEncodeHaibTfbsGm12892Pax5c20V0416101RawRep2 GM92 PAX5 V101 2 bigWig 0.389951 137.848007 GM12892 PAX5-C20 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1210 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12892 PAX5-C20 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM92 PAX5 V101 2\ subGroups view=RawSignal factor=PAX5C20 cellType=t3GM12892 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12892Pax5c20V0416101RawRep2\ type bigWig 0.389951 137.848007\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_ctss_rev Saos-2W/AscorbicAcidBgp_00hr15minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_reverse 0 1210 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep3%20%28A3%20T1%29.CNhs12877.12859-137D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12859-137D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_tpm_rev Saos-2W/AscorbicAcidBgp_00hr15minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_reverse 1 1210 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep3%20%28A3%20T1%29.CNhs12877.12859-137D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12859-137D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF358ADA suprpSkin EP300 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF358ADA) 1 1210 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF358ADA)\ parent encTfChipPk off\ shortLabel suprpSkin EP300\ subGroups cellType=suprapubic_skin factor=EP300\ track encTfChipPkENCFF358ADA\ wgEncodeHaibTfbsGm12892Pol2V0416102PkRep1 GM92 Pol2 V102 1 broadPeak GM12892 Pol2 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1211 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 Pol2 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM92 Pol2 V102 1\ subGroups view=Peaks factor=POL2 cellType=t3GM12892 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12892Pol2V0416102PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_forward 0 1211 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep1%20%28A1%20T2%29.CNhs12382.12664-134I9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12664-134I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_forward 1 1211 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep1%20%28A1%20T2%29.CNhs12382.12664-134I9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12664-134I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF704KAE suprpSkin EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF704KAE) 1 1211 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF704KAE)\ parent encTfChipPk off\ shortLabel suprpSkin EP300 1\ subGroups cellType=suprapubic_skin factor=EP300\ track encTfChipPkENCFF704KAE\ wgEncodeHaibTfbsGm12892Pol2V0416102RawRep1 GM92 Pol2 V102 1 bigWig 0.105092 251.485001 GM12892 Pol2 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1212 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12892 Pol2 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM92 Pol2 V102 1\ subGroups view=RawSignal factor=POL2 cellType=t3GM12892 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12892Pol2V0416102RawRep1\ type bigWig 0.105092 251.485001\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_ctss_rev Saos-2W/AscorbicAcidBgp_00hr30minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_reverse 0 1212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep1%20%28A1%20T2%29.CNhs12382.12664-134I9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12664-134I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_tpm_rev Saos-2W/AscorbicAcidBgp_00hr30minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_reverse 1 1212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep1%20%28A1%20T2%29.CNhs12382.12664-134I9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12664-134I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF963PEH suprpSkin EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF963PEH) 1 1212 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF963PEH)\ parent encTfChipPk off\ shortLabel suprpSkin EP300 2\ subGroups cellType=suprapubic_skin factor=EP300\ track encTfChipPkENCFF963PEH\ wgEncodeHaibTfbsGm12892Pol2V0416102PkRep2 GM92 Pol2 V102 2 broadPeak GM12892 Pol2 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1213 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 Pol2 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM92 Pol2 V102 2\ subGroups view=Peaks factor=POL2 cellType=t3GM12892 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12892Pol2V0416102PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_forward 0 1213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep2%20%28A2%20T2%29.CNhs12861.12762-136B8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12762-136B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_forward 1 1213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep2%20%28A2%20T2%29.CNhs12861.12762-136B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12762-136B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF653ILB sprpSkin POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in suprapubic_skin from ENCODE 3 (ENCFF653ILB) 1 1213 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in suprapubic_skin from ENCODE 3 (ENCFF653ILB)\ parent encTfChipPk off\ shortLabel sprpSkin POLR2A 1\ subGroups cellType=suprapubic_skin factor=POLR2A\ track encTfChipPkENCFF653ILB\ wgEncodeHaibTfbsGm12892Pol2V0416102RawRep2 GM92 Pol2 V102 2 bigWig 0.161976 204.171005 GM12892 Pol2 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1214 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12892 Pol2 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM92 Pol2 V102 2\ subGroups view=RawSignal factor=POL2 cellType=t3GM12892 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12892Pol2V0416102RawRep2\ type bigWig 0.161976 204.171005\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_ctss_rev Saos-2W/AscorbicAcidBgp_00hr30minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_reverse 0 1214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep2%20%28A2%20T2%29.CNhs12861.12762-136B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12762-136B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_tpm_rev Saos-2W/AscorbicAcidBgp_00hr30minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_reverse 1 1214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep2%20%28A2%20T2%29.CNhs12861.12762-136B8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12762-136B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF041MRZ sprpSkin POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in suprapubic_skin from ENCODE 3 (ENCFF041MRZ) 1 1214 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in suprapubic_skin from ENCODE 3 (ENCFF041MRZ)\ parent encTfChipPk off\ shortLabel sprpSkin POLR2A 2\ subGroups cellType=suprapubic_skin factor=POLR2A\ track encTfChipPkENCFF041MRZ\ wgEncodeHaibTfbsGm12892Pol24h8V0416102PkRep1 GM92 Pol2-4H8 V102 1 broadPeak GM12892 Pol2-4H8 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1215 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 Pol2-4H8 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM92 Pol2-4H8 V102 1\ subGroups view=Peaks factor=POL24H8 cellType=t3GM12892 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12892Pol24h8V0416102PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_forward 0 1215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep3%20%28A3%20T2%29.CNhs12954.12860-137D7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12860-137D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_forward 1 1215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep3%20%28A3%20T2%29.CNhs12954.12860-137D7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12860-137D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF885KKQ testis CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in testis from ENCODE 3 (ENCFF885KKQ) 1 1215 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in testis from ENCODE 3 (ENCFF885KKQ)\ parent encTfChipPk off\ shortLabel testis CTCF 1\ subGroups cellType=testis factor=CTCF\ track encTfChipPkENCFF885KKQ\ wgEncodeHaibTfbsGm12892Pol24h8V0416102RawRep1 GM92 Pol2-4H8 V102 1 bigWig 0.212062 289.304993 GM12892 Pol2-4H8 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1216 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12892 Pol2-4H8 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM92 Pol2-4H8 V102 1\ subGroups view=RawSignal factor=POL24H8 cellType=t3GM12892 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12892Pol24h8V0416102RawRep1\ type bigWig 0.212062 289.304993\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_ctss_rev Saos-2W/AscorbicAcidBgp_00hr30minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_reverse 0 1216 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep3%20%28A3%20T2%29.CNhs12954.12860-137D7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12860-137D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_tpm_rev Saos-2W/AscorbicAcidBgp_00hr30minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_reverse 1 1216 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep3%20%28A3%20T2%29.CNhs12954.12860-137D7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12860-137D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF432XLE testis CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in testis from ENCODE 3 (ENCFF432XLE) 1 1216 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in testis from ENCODE 3 (ENCFF432XLE)\ parent encTfChipPk off\ shortLabel testis CTCF 2\ subGroups cellType=testis factor=CTCF\ track encTfChipPkENCFF432XLE\ wgEncodeHaibTfbsGm12892Pol24h8V0416102PkRep2 GM92 Pol2-4H8 V102 2 broadPeak GM12892 Pol2-4H8 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1217 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 Pol2-4H8 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM92 Pol2-4H8 V102 2\ subGroups view=Peaks factor=POL24H8 cellType=t3GM12892 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12892Pol24h8V0416102PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_forward 0 1217 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep1%20%28A1%20T3%29.CNhs12383.12665-135A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12665-135A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_forward 1 1217 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep1%20%28A1%20T3%29.CNhs12383.12665-135A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12665-135A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF426BJU testis EP300 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in testis from ENCODE 3 (ENCFF426BJU) 1 1217 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in testis from ENCODE 3 (ENCFF426BJU)\ parent encTfChipPk off\ shortLabel testis EP300\ subGroups cellType=testis factor=EP300\ track encTfChipPkENCFF426BJU\ wgEncodeHaibTfbsGm12892Pol24h8V0416102RawRep2 GM92 Pol2-4H8 V102 2 bigWig 0.166554 187.289993 GM12892 Pol2-4H8 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1218 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12892 Pol2-4H8 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM92 Pol2-4H8 V102 2\ subGroups view=RawSignal factor=POL24H8 cellType=t3GM12892 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12892Pol24h8V0416102RawRep2\ type bigWig 0.166554 187.289993\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_ctss_rev Saos-2W/AscorbicAcidBgp_00hr45minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_reverse 0 1218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep1%20%28A1%20T3%29.CNhs12383.12665-135A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12665-135A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_tpm_rev Saos-2W/AscorbicAcidBgp_00hr45minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_reverse 1 1218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep1%20%28A1%20T3%29.CNhs12383.12665-135A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12665-135A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF940TNN testis POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in testis from ENCODE 3 (ENCFF940TNN) 1 1218 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in testis from ENCODE 3 (ENCFF940TNN)\ parent encTfChipPk off\ shortLabel testis POLR2A\ subGroups cellType=testis factor=POLR2A\ track encTfChipPkENCFF940TNN\ wgEncodeHaibTfbsGm12892Taf1V0416102PkRep1 GM92 TAF1 V102 1 broadPeak GM12892 TAF1 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1219 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 TAF1 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM92 TAF1 V102 1\ subGroups view=Peaks factor=TAF1 cellType=t3GM12892 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12892Taf1V0416102PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_forward 0 1219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep2%20%28A2%20T3%29.CNhs12862.12763-136B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12763-136B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_forward 1 1219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep2%20%28A2%20T3%29.CNhs12862.12763-136B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12763-136B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF520JZM thyroid CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF520JZM) 1 1219 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF520JZM)\ parent encTfChipPk off\ shortLabel thyroid CTCF 1\ subGroups cellType=thyroid_gland factor=CTCF\ track encTfChipPkENCFF520JZM\ wgEncodeHaibTfbsGm12892Taf1V0416102RawRep1 GM92 TAF1 V102 1 bigWig 0.155276 175.306000 GM12892 TAF1 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1220 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12892 TAF1 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM92 TAF1 V102 1\ subGroups view=RawSignal factor=TAF1 cellType=t3GM12892 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12892Taf1V0416102RawRep1\ type bigWig 0.155276 175.306000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_ctss_rev Saos-2W/AscorbicAcidBgp_00hr45minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_reverse 0 1220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep2%20%28A2%20T3%29.CNhs12862.12763-136B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12763-136B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_tpm_rev Saos-2W/AscorbicAcidBgp_00hr45minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_reverse 1 1220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep2%20%28A2%20T3%29.CNhs12862.12763-136B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12763-136B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF384ALJ thyroid CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF384ALJ) 1 1220 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF384ALJ)\ parent encTfChipPk off\ shortLabel thyroid CTCF 2\ subGroups cellType=thyroid_gland factor=CTCF\ track encTfChipPkENCFF384ALJ\ wgEncodeHaibTfbsGm12892Taf1V0416102PkRep2 GM92 TAF1 V102 2 broadPeak GM12892 TAF1 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1221 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 TAF1 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM92 TAF1 V102 2\ subGroups view=Peaks factor=TAF1 cellType=t3GM12892 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12892Taf1V0416102PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_forward 0 1221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep3%20%28A3%20T3%29.CNhs12878.12861-137D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12861-137D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_forward 1 1221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep3%20%28A3%20T3%29.CNhs12878.12861-137D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12861-137D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF401DFB thyroid CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF401DFB) 1 1221 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF401DFB)\ parent encTfChipPk off\ shortLabel thyroid CTCF 3\ subGroups cellType=thyroid_gland factor=CTCF\ track encTfChipPkENCFF401DFB\ wgEncodeHaibTfbsGm12892Taf1V0416102RawRep2 GM92 TAF1 V102 2 bigWig 0.187722 242.817993 GM12892 TAF1 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1222 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12892 TAF1 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM92 TAF1 V102 2\ subGroups view=RawSignal factor=TAF1 cellType=t3GM12892 protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12892Taf1V0416102RawRep2\ type bigWig 0.187722 242.817993\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_ctss_rev Saos-2W/AscorbicAcidBgp_00hr45minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_reverse 0 1222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep3%20%28A3%20T3%29.CNhs12878.12861-137D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12861-137D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_tpm_rev Saos-2W/AscorbicAcidBgp_00hr45minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_reverse 1 1222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep3%20%28A3%20T3%29.CNhs12878.12861-137D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12861-137D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF957ZLA thyroid POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in thyroid_gland from ENCODE 3 (ENCFF957ZLA) 1 1222 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in thyroid_gland from ENCODE 3 (ENCFF957ZLA)\ parent encTfChipPk off\ shortLabel thyroid POLR2A 1\ subGroups cellType=thyroid_gland factor=POLR2A\ track encTfChipPkENCFF957ZLA\ wgEncodeHaibTfbsGm12892Yy1V0416101PkRep1 GM92 YY1 V101 1 broadPeak GM12892 YY1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1223 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 YY1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM92 YY1 V101 1\ subGroups view=Peaks factor=YY1 cellType=t3GM12892 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12892Yy1V0416101PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_forward 0 1223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep1%20%28A1%20T4%29.CNhs12384.12666-135A2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12666-135A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_forward 1 1223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep1%20%28A1%20T4%29.CNhs12384.12666-135A2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12666-135A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF736DQP thyroid POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in thyroid_gland from ENCODE 3 (ENCFF736DQP) 1 1223 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in thyroid_gland from ENCODE 3 (ENCFF736DQP)\ parent encTfChipPk off\ shortLabel thyroid POLR2A 2\ subGroups cellType=thyroid_gland factor=POLR2A\ track encTfChipPkENCFF736DQP\ wgEncodeHaibTfbsGm12892Yy1V0416101RawRep1 GM92 YY1 V101 1 bigWig 0.272818 145.412003 GM12892 YY1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1224 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12892 YY1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM92 YY1 V101 1\ subGroups view=RawSignal factor=YY1 cellType=t3GM12892 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12892Yy1V0416101RawRep1\ type bigWig 0.272818 145.412003\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_ctss_rev Saos-2W/AscorbicAcidBgp_01hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_reverse 0 1224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep1%20%28A1%20T4%29.CNhs12384.12666-135A2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12666-135A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_tpm_rev Saos-2W/AscorbicAcidBgp_01hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_reverse 1 1224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep1%20%28A1%20T4%29.CNhs12384.12666-135A2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12666-135A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF246QUK tibialArtery CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in tibial_artery from ENCODE 3 (ENCFF246QUK) 1 1224 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in tibial_artery from ENCODE 3 (ENCFF246QUK)\ parent encTfChipPk off\ shortLabel tibialArtery CTCF\ subGroups cellType=tibial_artery factor=CTCF\ track encTfChipPkENCFF246QUK\ wgEncodeHaibTfbsGm12892Yy1V0416101PkRep2 GM92 YY1 V101 2 broadPeak GM12892 YY1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1225 0 0 0 127 127 127 0 0 0 regulation 1 longLabel GM12892 YY1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel GM92 YY1 V101 2\ subGroups view=Peaks factor=YY1 cellType=t3GM12892 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12892Yy1V0416101PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_forward 0 1225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep2%20%28A2%20T4%29.CNhs12863.12764-136C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12764-136C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_forward 1 1225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep2%20%28A2%20T4%29.CNhs12863.12764-136C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12764-136C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF646ODW tbialNerve CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF646ODW) 1 1225 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF646ODW)\ parent encTfChipPk off\ shortLabel tbialNerve CTCF 1\ subGroups cellType=tibial_nerve factor=CTCF\ track encTfChipPkENCFF646ODW\ wgEncodeHaibTfbsGm12892Yy1V0416101RawRep2 GM92 YY1 V101 2 bigWig 0.161534 174.255005 GM12892 YY1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1226 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12892 YY1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM92 YY1 V101 2\ subGroups view=RawSignal factor=YY1 cellType=t3GM12892 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsGm12892Yy1V0416101RawRep2\ type bigWig 0.161534 174.255005\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_ctss_rev Saos-2W/AscorbicAcidBgp_01hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_reverse 0 1226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep2%20%28A2%20T4%29.CNhs12863.12764-136C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12764-136C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_tpm_rev Saos-2W/AscorbicAcidBgp_01hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_reverse 1 1226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep2%20%28A2%20T4%29.CNhs12863.12764-136C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12764-136C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF407FUL tbialNerve CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF407FUL) 1 1226 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF407FUL)\ parent encTfChipPk off\ shortLabel tbialNerve CTCF 2\ subGroups cellType=tibial_nerve factor=CTCF\ track encTfChipPkENCFF407FUL\ wgEncodeHaibTfbsGm12892RxlchV0416101RawRep1 GM92 RvXL V101 1 bigWig 0.094787 377.795990 GM12892 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1227 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12892 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM92 RvXL V101 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3GM12892 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12892RxlchV0416101RawRep1\ type bigWig 0.094787 377.795990\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_forward 0 1227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep3%20%28A3%20T4%29.CNhs12955.12862-137D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12862-137D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_forward 1 1227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep3%20%28A3%20T4%29.CNhs12955.12862-137D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12862-137D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF239EJM tibialNerve CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF239EJM) 1 1227 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF239EJM)\ parent encTfChipPk off\ shortLabel tibialNerve CTCF\ subGroups cellType=tibial_nerve factor=CTCF\ track encTfChipPkENCFF239EJM\ wgEncodeHaibTfbsGm12892RxlchV0416102RawRep1 GM92 RvXL V102 1 bigWig 0.173756 207.464996 GM12892 Control v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1228 0 0 0 127 127 127 0 0 0 regulation 0 longLabel GM12892 Control v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel GM92 RvXL V102 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3GM12892 protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsGm12892RxlchV0416102RawRep1\ type bigWig 0.173756 207.464996\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_ctss_rev Saos-2W/AscorbicAcidBgp_01hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_reverse 0 1228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep3%20%28A3%20T4%29.CNhs12955.12862-137D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12862-137D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_tpm_rev Saos-2W/AscorbicAcidBgp_01hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_reverse 1 1228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep3%20%28A3%20T4%29.CNhs12955.12862-137D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12862-137D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF086ABE tbialNerv EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in tibial_nerve from ENCODE 3 (ENCFF086ABE) 1 1228 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in tibial_nerve from ENCODE 3 (ENCFF086ABE)\ parent encTfChipPk off\ shortLabel tbialNerv EP300 1\ subGroups cellType=tibial_nerve factor=EP300\ track encTfChipPkENCFF086ABE\ wgEncodeHaibTfbsHct116Atf3V0422111PkRep1 HCT ATF3 V11 1 broadPeak HCT-116 ATF3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1229 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 ATF3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT ATF3 V11 1\ subGroups view=Peaks factor=ATF3 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Atf3V0422111PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_forward 0 1229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep1%20%28A1%20T5%29.CNhs12386.12667-135A3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12667-135A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_forward 1 1229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep1%20%28A1%20T5%29.CNhs12386.12667-135A3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12667-135A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF981JOH tbialNerv EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in tibial_nerve from ENCODE 3 (ENCFF981JOH) 1 1229 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in tibial_nerve from ENCODE 3 (ENCFF981JOH)\ parent encTfChipPk off\ shortLabel tbialNerv EP300 2\ subGroups cellType=tibial_nerve factor=EP300\ track encTfChipPkENCFF981JOH\ wgEncodeHaibTfbsHct116Atf3V0422111RawRep1 HCT ATF3 V11 1 bigWig 1.000000 9045.000000 HCT-116 ATF3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1230 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 ATF3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT ATF3 V11 1\ subGroups view=RawSignal factor=ATF3 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Atf3V0422111RawRep1\ type bigWig 1.000000 9045.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_ctss_rev Saos-2W/AscorbicAcidBgp_01hr20minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_reverse 0 1230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep1%20%28A1%20T5%29.CNhs12386.12667-135A3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12667-135A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_tpm_rev Saos-2W/AscorbicAcidBgp_01hr20minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_reverse 1 1230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep1%20%28A1%20T5%29.CNhs12386.12667-135A3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12667-135A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF921JEC tblNerve POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in tibial_nerve from ENCODE 3 (ENCFF921JEC) 1 1230 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in tibial_nerve from ENCODE 3 (ENCFF921JEC)\ parent encTfChipPk off\ shortLabel tblNerve POLR2A 1\ subGroups cellType=tibial_nerve factor=POLR2A\ track encTfChipPkENCFF921JEC\ wgEncodeHaibTfbsHct116Atf3V0422111PkRep2 HCT ATF3 V11 2 broadPeak HCT-116 ATF3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1231 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 ATF3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT ATF3 V11 2\ subGroups view=Peaks factor=ATF3 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Atf3V0422111PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_forward 0 1231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep2%20%28A2%20T5%29.CNhs12864.12765-136C2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12765-136C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_forward 1 1231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep2%20%28A2%20T5%29.CNhs12864.12765-136C2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12765-136C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF823BWT tblNerve POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in tibial_nerve from ENCODE 3 (ENCFF823BWT) 1 1231 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in tibial_nerve from ENCODE 3 (ENCFF823BWT)\ parent encTfChipPk off\ shortLabel tblNerve POLR2A 2\ subGroups cellType=tibial_nerve factor=POLR2A\ track encTfChipPkENCFF823BWT\ wgEncodeHaibTfbsHct116Atf3V0422111RawRep2 HCT ATF3 V11 2 bigWig 1.000000 2670.000000 HCT-116 ATF3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1232 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 ATF3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT ATF3 V11 2\ subGroups view=RawSignal factor=ATF3 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Atf3V0422111RawRep2\ type bigWig 1.000000 2670.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_ctss_rev Saos-2W/AscorbicAcidBgp_01hr20minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_reverse 0 1232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep2%20%28A2%20T5%29.CNhs12864.12765-136C2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12765-136C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_tpm_rev Saos-2W/AscorbicAcidBgp_01hr20minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_reverse 1 1232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep2%20%28A2%20T5%29.CNhs12864.12765-136C2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12765-136C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF369UWV trnsvColon CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF369UWV) 1 1232 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF369UWV)\ parent encTfChipPk off\ shortLabel trnsvColon CTCF 1\ subGroups cellType=transverse_colon factor=CTCF\ track encTfChipPkENCFF369UWV\ wgEncodeHaibTfbsHct116Cbx3sc101004V0422111PkRep1 HCT CBX3 V11 1 broadPeak HCT-116 CBX3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1233 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 CBX3 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT CBX3 V11 1\ subGroups view=Peaks factor=CBX3SC101004 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Cbx3sc101004V0422111PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_forward 0 1233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep3%20%28A3%20T5%29.CNhs12879.12863-137E1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12863-137E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_forward 1 1233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep3%20%28A3%20T5%29.CNhs12879.12863-137E1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12863-137E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF316LSD trnsvColon CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF316LSD) 1 1233 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF316LSD)\ parent encTfChipPk off\ shortLabel trnsvColon CTCF 2\ subGroups cellType=transverse_colon factor=CTCF\ track encTfChipPkENCFF316LSD\ wgEncodeHaibTfbsHct116Cbx3sc101004V0422111RawRep1 HCT CBX3 V11 1 bigWig 1.000000 3410.000000 HCT-116 CBX3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1234 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 CBX3 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT CBX3 V11 1\ subGroups view=RawSignal factor=CBX3SC101004 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Cbx3sc101004V0422111RawRep1\ type bigWig 1.000000 3410.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_ctss_rev Saos-2W/AscorbicAcidBgp_01hr20minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_reverse 0 1234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep3%20%28A3%20T5%29.CNhs12879.12863-137E1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12863-137E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_tpm_rev Saos-2W/AscorbicAcidBgp_01hr20minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_reverse 1 1234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep3%20%28A3%20T5%29.CNhs12879.12863-137E1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12863-137E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF251IXD trnsvColon CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF251IXD) 1 1234 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF251IXD)\ parent encTfChipPk off\ shortLabel trnsvColon CTCF 3\ subGroups cellType=transverse_colon factor=CTCF\ track encTfChipPkENCFF251IXD\ wgEncodeHaibTfbsHct116Cbx3sc101004V0422111PkRep2 HCT CBX3 V11 2 broadPeak HCT-116 CBX3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1235 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 CBX3 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT CBX3 V11 2\ subGroups view=Peaks factor=CBX3SC101004 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Cbx3sc101004V0422111PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_forward 0 1235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep1%20%28A1%20T6%29.CNhs12387.12668-135A4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12668-135A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_forward 1 1235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep1%20%28A1%20T6%29.CNhs12387.12668-135A4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12668-135A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF547PLX trnsvColon CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF547PLX) 1 1235 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF547PLX)\ parent encTfChipPk off\ shortLabel trnsvColon CTCF 4\ subGroups cellType=transverse_colon factor=CTCF\ track encTfChipPkENCFF547PLX\ wgEncodeHaibTfbsHct116Cbx3sc101004V0422111RawRep2 HCT CBX3 V11 2 bigWig 1.000000 6308.000000 HCT-116 CBX3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1236 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 CBX3 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT CBX3 V11 2\ subGroups view=RawSignal factor=CBX3SC101004 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Cbx3sc101004V0422111RawRep2\ type bigWig 1.000000 6308.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_ctss_rev Saos-2W/AscorbicAcidBgp_01hr40minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_reverse 0 1236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep1%20%28A1%20T6%29.CNhs12387.12668-135A4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12668-135A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_tpm_rev Saos-2W/AscorbicAcidBgp_01hr40minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_reverse 1 1236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep1%20%28A1%20T6%29.CNhs12387.12668-135A4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12668-135A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF830XLX transvCln EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF830XLX) 1 1236 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF830XLX)\ parent encTfChipPk off\ shortLabel transvCln EP300 1\ subGroups cellType=transverse_colon factor=EP300\ track encTfChipPkENCFF830XLX\ wgEncodeHaibTfbsHct116Cebpbsc150V0422111PkRep1 HCT CEBPB V11 1 broadPeak HCT-116 CEBPB v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1237 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 CEBPB v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT CEBPB V11 1\ subGroups view=Peaks factor=CEBPB cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Cebpbsc150V0422111PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_forward 0 1237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep2%20%28A2%20T6%29.CNhs12866.12766-136C3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12766-136C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_forward 1 1237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep2%20%28A2%20T6%29.CNhs12866.12766-136C3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12766-136C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF035UIJ transvCln EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF035UIJ) 1 1237 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF035UIJ)\ parent encTfChipPk off\ shortLabel transvCln EP300 2\ subGroups cellType=transverse_colon factor=EP300\ track encTfChipPkENCFF035UIJ\ wgEncodeHaibTfbsHct116Cebpbsc150V0422111RawRep1 HCT CEBPB V11 1 bigWig 1.000000 10182.000000 HCT-116 CEBPB v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1238 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 CEBPB v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT CEBPB V11 1\ subGroups view=RawSignal factor=CEBPB cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Cebpbsc150V0422111RawRep1\ type bigWig 1.000000 10182.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_ctss_rev Saos-2W/AscorbicAcidBgp_01hr40minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_reverse 0 1238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep2%20%28A2%20T6%29.CNhs12866.12766-136C3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12766-136C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_tpm_rev Saos-2W/AscorbicAcidBgp_01hr40minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_reverse 1 1238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep2%20%28A2%20T6%29.CNhs12866.12766-136C3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12766-136C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF052QTX transvCln EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF052QTX) 1 1238 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF052QTX)\ parent encTfChipPk off\ shortLabel transvCln EP300 3\ subGroups cellType=transverse_colon factor=EP300\ track encTfChipPkENCFF052QTX\ wgEncodeHaibTfbsHct116Cebpbsc150V0422111PkRep2 HCT CEBPB V11 2 broadPeak HCT-116 CEBPB v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1239 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 CEBPB v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT CEBPB V11 2\ subGroups view=Peaks factor=CEBPB cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Cebpbsc150V0422111PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_forward 0 1239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep3%20%28A3%20T6%29.CNhs12880.12864-137E2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12864-137E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_forward 1 1239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep3%20%28A3%20T6%29.CNhs12880.12864-137E2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12864-137E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF382QJG trnsvCln POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF382QJG) 1 1239 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF382QJG)\ parent encTfChipPk off\ shortLabel trnsvCln POLR2A 1\ subGroups cellType=transverse_colon factor=POLR2A\ track encTfChipPkENCFF382QJG\ wgEncodeHaibTfbsHct116Cebpbsc150V0422111RawRep2 HCT CEBPB V11 2 bigWig 1.000000 7220.000000 HCT-116 CEBPB v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1240 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 CEBPB v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT CEBPB V11 2\ subGroups view=RawSignal factor=CEBPB cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Cebpbsc150V0422111RawRep2\ type bigWig 1.000000 7220.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_ctss_rev Saos-2W/AscorbicAcidBgp_01hr40minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_reverse 0 1240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep3%20%28A3%20T6%29.CNhs12880.12864-137E2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12864-137E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_tpm_rev Saos-2W/AscorbicAcidBgp_01hr40minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_reverse 1 1240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep3%20%28A3%20T6%29.CNhs12880.12864-137E2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12864-137E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF022MCD trnsvCln POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF022MCD) 1 1240 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF022MCD)\ parent encTfChipPk off\ shortLabel trnsvCln POLR2A 2\ subGroups cellType=transverse_colon factor=POLR2A\ track encTfChipPkENCFF022MCD\ wgEncodeHaibTfbsHct116CtcfcV0422111PkRep1 HCT CTCF V11 1 broadPeak HCT-116 CTCF 5916 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1241 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 CTCF 5916 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT CTCF V11 1\ subGroups view=Peaks factor=CTCFSC5916 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116CtcfcV0422111PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_forward 0 1241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep1%20%28A1%20T7%29.CNhs12388.12669-135A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12669-135A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_forward 1 1241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep1%20%28A1%20T7%29.CNhs12388.12669-135A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12669-135A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF759UNB trnsvCln POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF759UNB) 1 1241 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF759UNB)\ parent encTfChipPk off\ shortLabel trnsvCln POLR2A 3\ subGroups cellType=transverse_colon factor=POLR2A\ track encTfChipPkENCFF759UNB\ wgEncodeHaibTfbsHct116CtcfcV0422111RawRep1 HCT CTCF V11 1 bigWig 1.000000 4478.000000 HCT-116 CTCF 5916 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1242 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 CTCF 5916 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT CTCF V11 1\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116CtcfcV0422111RawRep1\ type bigWig 1.000000 4478.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_ctss_rev Saos-2W/AscorbicAcidBgp_02hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_reverse 0 1242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep1%20%28A1%20T7%29.CNhs12388.12669-135A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12669-135A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_tpm_rev Saos-2W/AscorbicAcidBgp_02hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_reverse 1 1242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep1%20%28A1%20T7%29.CNhs12388.12669-135A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12669-135A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF911TTD trnsvCln POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF911TTD) 1 1242 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF911TTD)\ parent encTfChipPk off\ shortLabel trnsvCln POLR2A 4\ subGroups cellType=transverse_colon factor=POLR2A\ track encTfChipPkENCFF911TTD\ wgEncodeHaibTfbsHct116CtcfcV0422111PkRep2 HCT CTCF V11 2 broadPeak HCT-116 CTCF 5916 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1243 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 CTCF 5916 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT CTCF V11 2\ subGroups view=Peaks factor=CTCFSC5916 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116CtcfcV0422111PkRep2\ type broadPeak\ encTfChipPkENCFF745NPN lungUpLobe CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF745NPN) 1 1243 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF745NPN)\ parent encTfChipPk off\ shortLabel lungUpLobe CTCF 1\ subGroups cellType=upper_lobe_of_left_lung factor=CTCF\ track encTfChipPkENCFF745NPN\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_forward 0 1243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep2%20%28A2%20T7%29.CNhs12867.12767-136C4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12767-136C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_forward 1 1243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep2%20%28A2%20T7%29.CNhs12867.12767-136C4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12767-136C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116CtcfcV0422111RawRep2 HCT CTCF V11 2 bigWig 1.000000 6951.000000 HCT-116 CTCF 5916 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1244 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 CTCF 5916 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT CTCF V11 2\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116CtcfcV0422111RawRep2\ type bigWig 1.000000 6951.000000\ encTfChipPkENCFF544XZU lungUpLobe CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF544XZU) 1 1244 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF544XZU)\ parent encTfChipPk off\ shortLabel lungUpLobe CTCF 2\ subGroups cellType=upper_lobe_of_left_lung factor=CTCF\ track encTfChipPkENCFF544XZU\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_ctss_rev Saos-2W/AscorbicAcidBgp_02hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_reverse 0 1244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep2%20%28A2%20T7%29.CNhs12867.12767-136C4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12767-136C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_tpm_rev Saos-2W/AscorbicAcidBgp_02hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_reverse 1 1244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep2%20%28A2%20T7%29.CNhs12867.12767-136C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12767-136C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Egr1V0422111PkRep1 HCT Egr-1 V11 1 broadPeak HCT-116 Egr-1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1245 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 Egr-1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT Egr-1 V11 1\ subGroups view=Peaks factor=EGR1 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Egr1V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF984EZB lungUpLobe CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF984EZB) 1 1245 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF984EZB)\ parent encTfChipPk off\ shortLabel lungUpLobe CTCF 3\ subGroups cellType=upper_lobe_of_left_lung factor=CTCF\ track encTfChipPkENCFF984EZB\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_forward 0 1245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep3%20%28A3%20T7%29.CNhs12881.12865-137E3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12865-137E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_forward 1 1245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep3%20%28A3%20T7%29.CNhs12881.12865-137E3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12865-137E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Egr1V0422111RawRep1 HCT Egr-1 V11 1 bigWig 1.000000 6190.000000 HCT-116 Egr-1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1246 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 Egr-1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT Egr-1 V11 1\ subGroups view=RawSignal factor=EGR1 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Egr1V0422111RawRep1\ type bigWig 1.000000 6190.000000\ encTfChipPkENCFF781EZZ lungUpLobe CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF781EZZ) 1 1246 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF781EZZ)\ parent encTfChipPk off\ shortLabel lungUpLobe CTCF 4\ subGroups cellType=upper_lobe_of_left_lung factor=CTCF\ track encTfChipPkENCFF781EZZ\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_ctss_rev Saos-2W/AscorbicAcidBgp_02hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_reverse 0 1246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep3%20%28A3%20T7%29.CNhs12881.12865-137E3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12865-137E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_tpm_rev Saos-2W/AscorbicAcidBgp_02hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_reverse 1 1246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep3%20%28A3%20T7%29.CNhs12881.12865-137E3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12865-137E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Egr1V0422111PkRep2 HCT Egr-1 V11 2 broadPeak HCT-116 Egr-1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1247 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 Egr-1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT Egr-1 V11 2\ subGroups view=Peaks factor=EGR1 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Egr1V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF294RNI lungUpLbe EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF294RNI) 1 1247 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF294RNI)\ parent encTfChipPk off\ shortLabel lungUpLbe EP300 1\ subGroups cellType=upper_lobe_of_left_lung factor=EP300\ track encTfChipPkENCFF294RNI\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_forward 0 1247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep1%20%28A1%20T8%29.CNhs12389.12670-135A6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12670-135A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_forward 1 1247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep1%20%28A1%20T8%29.CNhs12389.12670-135A6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12670-135A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Egr1V0422111RawRep2 HCT Egr-1 V11 2 bigWig 1.000000 7555.000000 HCT-116 Egr-1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1248 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 Egr-1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT Egr-1 V11 2\ subGroups view=RawSignal factor=EGR1 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Egr1V0422111RawRep2\ type bigWig 1.000000 7555.000000\ encTfChipPkENCFF145NMU lungUpLbe EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF145NMU) 1 1248 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF145NMU)\ parent encTfChipPk off\ shortLabel lungUpLbe EP300 2\ subGroups cellType=upper_lobe_of_left_lung factor=EP300\ track encTfChipPkENCFF145NMU\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_ctss_rev Saos-2W/AscorbicAcidBgp_02hr30minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_reverse 0 1248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep1%20%28A1%20T8%29.CNhs12389.12670-135A6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12670-135A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_tpm_rev Saos-2W/AscorbicAcidBgp_02hr30minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_reverse 1 1248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep1%20%28A1%20T8%29.CNhs12389.12670-135A6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12670-135A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Elf1V0422111PkRep1 HCT ELF1 V11 1 broadPeak HCT-116 ELF1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1249 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 ELF1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT ELF1 V11 1\ subGroups view=Peaks factor=ELF1SC631 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Elf1V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF700HZX lungUpLbe EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF700HZX) 1 1249 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF700HZX)\ parent encTfChipPk off\ shortLabel lungUpLbe EP300 3\ subGroups cellType=upper_lobe_of_left_lung factor=EP300\ track encTfChipPkENCFF700HZX\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_forward 0 1249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep2%20%28A2%20T8%29.CNhs12868.12768-136C5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12768-136C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_forward 1 1249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep2%20%28A2%20T8%29.CNhs12868.12768-136C5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12768-136C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Elf1V0422111RawRep1 HCT ELF1 V11 1 bigWig 1.000000 3405.000000 HCT-116 ELF1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1250 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 ELF1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT ELF1 V11 1\ subGroups view=RawSignal factor=ELF1SC631 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Elf1V0422111RawRep1\ type bigWig 1.000000 3405.000000\ encTfChipPkENCFF423CKN lungUpLbe EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF423CKN) 1 1250 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF423CKN)\ parent encTfChipPk off\ shortLabel lungUpLbe EP300 4\ subGroups cellType=upper_lobe_of_left_lung factor=EP300\ track encTfChipPkENCFF423CKN\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_ctss_rev Saos-2W/AscorbicAcidBgp_02hr30minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_reverse 0 1250 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep2%20%28A2%20T8%29.CNhs12868.12768-136C5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12768-136C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_tpm_rev Saos-2W/AscorbicAcidBgp_02hr30minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_reverse 1 1250 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep2%20%28A2%20T8%29.CNhs12868.12768-136C5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12768-136C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Elf1V0422111PkRep2 HCT ELF1 V11 2 broadPeak HCT-116 ELF1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1251 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 ELF1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT ELF1 V11 2\ subGroups view=Peaks factor=ELF1SC631 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Elf1V0422111PkRep2\ type broadPeak\ encTfChipPkENCFF690LWY lungUpLb POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF690LWY) 1 1251 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF690LWY)\ parent encTfChipPk off\ shortLabel lungUpLb POLR2A 1\ subGroups cellType=upper_lobe_of_left_lung factor=POLR2A\ track encTfChipPkENCFF690LWY\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_forward 0 1251 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep3%20%28A3%20T8%29.CNhs12882.12866-137E4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12866-137E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_forward 1 1251 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep3%20%28A3%20T8%29.CNhs12882.12866-137E4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12866-137E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Elf1V0422111RawRep2 HCT ELF1 V11 2 bigWig 1.000000 4655.000000 HCT-116 ELF1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1252 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 ELF1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT ELF1 V11 2\ subGroups view=RawSignal factor=ELF1SC631 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Elf1V0422111RawRep2\ type bigWig 1.000000 4655.000000\ encTfChipPkENCFF368ROI lungUpLb POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF368ROI) 1 1252 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF368ROI)\ parent encTfChipPk off\ shortLabel lungUpLb POLR2A 2\ subGroups cellType=upper_lobe_of_left_lung factor=POLR2A\ track encTfChipPkENCFF368ROI\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_ctss_rev Saos-2W/AscorbicAcidBgp_02hr30minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_reverse 0 1252 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep3%20%28A3%20T8%29.CNhs12882.12866-137E4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12866-137E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_tpm_rev Saos-2W/AscorbicAcidBgp_02hr30minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_reverse 1 1252 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep3%20%28A3%20T8%29.CNhs12882.12866-137E4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12866-137E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Fosl1V0422111PkRep1 HCT FOSL1 V11 1 broadPeak HCT-116 FOSL1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1253 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 FOSL1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT FOSL1 V11 1\ subGroups view=Peaks factor=FOSL1SC183 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Fosl1V0422111PkRep1\ type broadPeak\ encTfChipPkENCFF638MFT lungUpLb POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF638MFT) 1 1253 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF638MFT)\ parent encTfChipPk off\ shortLabel lungUpLb POLR2A 3\ subGroups cellType=upper_lobe_of_left_lung factor=POLR2A\ track encTfChipPkENCFF638MFT\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_ctss_fwd Saos-2W/AscorbicAcidBgp_03hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_forward 0 1253 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep1%20%28A1%20T9%29.CNhs12390.12671-135A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12671-135A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_tpm_fwd Saos-2W/AscorbicAcidBgp_03hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_forward 1 1253 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep1%20%28A1%20T9%29.CNhs12390.12671-135A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12671-135A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Fosl1V0422111RawRep1 HCT FOSL1 V11 1 bigWig 1.000000 10499.000000 HCT-116 FOSL1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1254 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 FOSL1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT FOSL1 V11 1\ subGroups view=RawSignal factor=FOSL1SC183 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Fosl1V0422111RawRep1\ type bigWig 1.000000 10499.000000\ encTfChipPkENCFF023MUY lungUpLb POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF023MUY) 1 1254 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF023MUY)\ parent encTfChipPk off\ shortLabel lungUpLb POLR2A 4\ subGroups cellType=upper_lobe_of_left_lung factor=POLR2A\ track encTfChipPkENCFF023MUY\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_ctss_rev Saos-2W/AscorbicAcidBgp_03hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_reverse 0 1254 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep1%20%28A1%20T9%29.CNhs12390.12671-135A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12671-135A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_tpm_rev Saos-2W/AscorbicAcidBgp_03hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_reverse 1 1254 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep1%20%28A1%20T9%29.CNhs12390.12671-135A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12671-135A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Fosl1V0422111PkRep2 HCT FOSL1 V11 2 broadPeak HCT-116 FOSL1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1255 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 FOSL1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT FOSL1 V11 2\ subGroups view=Peaks factor=FOSL1SC183 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Fosl1V0422111PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_ctss_fwd Saos-2W/AscorbicAcidBgp_03hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_forward 0 1255 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep2%20%28A2%20T9%29.CNhs12869.12769-136C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12769-136C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_tpm_fwd Saos-2W/AscorbicAcidBgp_03hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_forward 1 1255 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep2%20%28A2%20T9%29.CNhs12869.12769-136C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12769-136C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF282BOE uterus CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in uterus from ENCODE 3 (ENCFF282BOE) 1 1255 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in uterus from ENCODE 3 (ENCFF282BOE)\ parent encTfChipPk off\ shortLabel uterus CTCF 1\ subGroups cellType=uterus factor=CTCF\ track encTfChipPkENCFF282BOE\ wgEncodeHaibTfbsHct116Fosl1V0422111RawRep2 HCT FOSL1 V11 2 bigWig 1.000000 8502.000000 HCT-116 FOSL1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1256 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 FOSL1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT FOSL1 V11 2\ subGroups view=RawSignal factor=FOSL1SC183 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Fosl1V0422111RawRep2\ type bigWig 1.000000 8502.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_ctss_rev Saos-2W/AscorbicAcidBgp_03hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_reverse 0 1256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep2%20%28A2%20T9%29.CNhs12869.12769-136C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12769-136C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_tpm_rev Saos-2W/AscorbicAcidBgp_03hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_reverse 1 1256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep2%20%28A2%20T9%29.CNhs12869.12769-136C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12769-136C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF634DDY uterus CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in uterus from ENCODE 3 (ENCFF634DDY) 1 1256 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in uterus from ENCODE 3 (ENCFF634DDY)\ parent encTfChipPk off\ shortLabel uterus CTCF 2\ subGroups cellType=uterus factor=CTCF\ track encTfChipPkENCFF634DDY\ wgEncodeHaibTfbsHct116JundV0422111PkRep1 HCT JunD V11 1 broadPeak HCT-116 JunD v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1257 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 JunD v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT JunD V11 1\ subGroups view=Peaks factor=JUND cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116JundV0422111PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_ctss_fwd Saos-2W/AscorbicAcidBgp_03hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_forward 0 1257 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep3%20%28A3%20T9%29.CNhs12883.12867-137E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12867-137E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_tpm_fwd Saos-2W/AscorbicAcidBgp_03hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_forward 1 1257 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep3%20%28A3%20T9%29.CNhs12883.12867-137E5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12867-137E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF822OTY uterus POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in uterus from ENCODE 3 (ENCFF822OTY) 1 1257 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in uterus from ENCODE 3 (ENCFF822OTY)\ parent encTfChipPk off\ shortLabel uterus POLR2A 1\ subGroups cellType=uterus factor=POLR2A\ track encTfChipPkENCFF822OTY\ wgEncodeHaibTfbsHct116JundV0422111RawRep1 HCT JunD V11 1 bigWig 1.000000 10000.000000 HCT-116 JunD v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1258 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 JunD v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT JunD V11 1\ subGroups view=RawSignal factor=JUND cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116JundV0422111RawRep1\ type bigWig 1.000000 10000.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_ctss_rev Saos-2W/AscorbicAcidBgp_03hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_reverse 0 1258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep3%20%28A3%20T9%29.CNhs12883.12867-137E5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12867-137E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_tpm_rev Saos-2W/AscorbicAcidBgp_03hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_reverse 1 1258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep3%20%28A3%20T9%29.CNhs12883.12867-137E5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12867-137E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF164YIY uterus POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in uterus from ENCODE 3 (ENCFF164YIY) 1 1258 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in uterus from ENCODE 3 (ENCFF164YIY)\ parent encTfChipPk off\ shortLabel uterus POLR2A 2\ subGroups cellType=uterus factor=POLR2A\ track encTfChipPkENCFF164YIY\ wgEncodeHaibTfbsHct116JundV0422111PkRep2 HCT JunD V11 2 broadPeak HCT-116 JunD v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1259 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 JunD v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT JunD V11 2\ subGroups view=Peaks factor=JUND cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116JundV0422111PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_ctss_fwd Saos-2W/AscorbicAcidBgp_04hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_forward 0 1259 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep1%20%28A1%20T10%29.CNhs12391.12672-135A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12672-135A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_tpm_fwd Saos-2W/AscorbicAcidBgp_04hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_forward 1 1259 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep1%20%28A1%20T10%29.CNhs12391.12672-135A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12672-135A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF767YMW vagina CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in vagina from ENCODE 3 (ENCFF767YMW) 1 1259 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in vagina from ENCODE 3 (ENCFF767YMW)\ parent encTfChipPk off\ shortLabel vagina CTCF 1\ subGroups cellType=vagina factor=CTCF\ track encTfChipPkENCFF767YMW\ wgEncodeHaibTfbsHct116JundV0422111RawRep2 HCT JunD V11 2 bigWig 1.000000 6702.000000 HCT-116 JunD v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1260 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 JunD v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT JunD V11 2\ subGroups view=RawSignal factor=JUND cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116JundV0422111RawRep2\ type bigWig 1.000000 6702.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_ctss_rev Saos-2W/AscorbicAcidBgp_04hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_reverse 0 1260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep1%20%28A1%20T10%29.CNhs12391.12672-135A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12672-135A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_tpm_rev Saos-2W/AscorbicAcidBgp_04hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_reverse 1 1260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep1%20%28A1%20T10%29.CNhs12391.12672-135A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12672-135A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF176MPT vagina CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in vagina from ENCODE 3 (ENCFF176MPT) 1 1260 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in vagina from ENCODE 3 (ENCFF176MPT)\ parent encTfChipPk off\ shortLabel vagina CTCF 2\ subGroups cellType=vagina factor=CTCF\ track encTfChipPkENCFF176MPT\ wgEncodeHaibTfbsHct116MaxV0422111PkRep1 HCT Max V11 1 broadPeak HCT-116 Max v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1261 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 Max v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT Max V11 1\ subGroups view=Peaks factor=MAX cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116MaxV0422111PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_ctss_fwd Saos-2W/AscorbicAcidBgp_04hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_forward 0 1261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep2%20%28A2%20T10%29.CNhs12870.12770-136C7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12770-136C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_tpm_fwd Saos-2W/AscorbicAcidBgp_04hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_forward 1 1261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep2%20%28A2%20T10%29.CNhs12870.12770-136C7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12770-136C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF797HPJ vagina EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in vagina from ENCODE 3 (ENCFF797HPJ) 1 1261 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in vagina from ENCODE 3 (ENCFF797HPJ)\ parent encTfChipPk off\ shortLabel vagina EP300 1\ subGroups cellType=vagina factor=EP300\ track encTfChipPkENCFF797HPJ\ wgEncodeHaibTfbsHct116MaxV0422111RawRep1 HCT Max V11 1 bigWig 1.000000 10713.000000 HCT-116 Max v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1262 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 Max v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT Max V11 1\ subGroups view=RawSignal factor=MAX cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116MaxV0422111RawRep1\ type bigWig 1.000000 10713.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_ctss_rev Saos-2W/AscorbicAcidBgp_04hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_reverse 0 1262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep2%20%28A2%20T10%29.CNhs12870.12770-136C7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12770-136C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_tpm_rev Saos-2W/AscorbicAcidBgp_04hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_reverse 1 1262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep2%20%28A2%20T10%29.CNhs12870.12770-136C7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12770-136C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF362SRJ vagina EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in vagina from ENCODE 3 (ENCFF362SRJ) 1 1262 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in vagina from ENCODE 3 (ENCFF362SRJ)\ parent encTfChipPk off\ shortLabel vagina EP300 2\ subGroups cellType=vagina factor=EP300\ track encTfChipPkENCFF362SRJ\ wgEncodeHaibTfbsHct116MaxV0422111PkRep2 HCT Max V11 2 broadPeak HCT-116 Max v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1263 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 Max v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT Max V11 2\ subGroups view=Peaks factor=MAX cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116MaxV0422111PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_ctss_fwd Saos-2W/AscorbicAcidBgp_04hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_forward 0 1263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep3%20%28A3%20T10%29.CNhs12884.12868-137E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12868-137E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_tpm_fwd Saos-2W/AscorbicAcidBgp_04hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_forward 1 1263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep3%20%28A3%20T10%29.CNhs12884.12868-137E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12868-137E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF988VKY vagina POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in vagina from ENCODE 3 (ENCFF988VKY) 1 1263 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in vagina from ENCODE 3 (ENCFF988VKY)\ parent encTfChipPk off\ shortLabel vagina POLR2A 1\ subGroups cellType=vagina factor=POLR2A\ track encTfChipPkENCFF988VKY\ wgEncodeHaibTfbsHct116MaxV0422111RawRep2 HCT Max V11 2 bigWig 1.000000 6780.000000 HCT-116 Max v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1264 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 Max v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT Max V11 2\ subGroups view=RawSignal factor=MAX cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116MaxV0422111RawRep2\ type bigWig 1.000000 6780.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_ctss_rev Saos-2W/AscorbicAcidBgp_04hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_reverse 0 1264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep3%20%28A3%20T10%29.CNhs12884.12868-137E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12868-137E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_tpm_rev Saos-2W/AscorbicAcidBgp_04hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_reverse 1 1264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep3%20%28A3%20T10%29.CNhs12884.12868-137E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12868-137E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF608UAY vagina POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in vagina from ENCODE 3 (ENCFF608UAY) 1 1264 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in vagina from ENCODE 3 (ENCFF608UAY)\ parent encTfChipPk off\ shortLabel vagina POLR2A 2\ subGroups cellType=vagina factor=POLR2A\ track encTfChipPkENCFF608UAY\ wgEncodeHaibTfbsHct116NrsfV0422111PkRep1 HCT NRSF V11 1 broadPeak HCT-116 NRSF v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1265 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 NRSF v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT NRSF V11 1\ subGroups view=Peaks factor=NRSF cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116NrsfV0422111PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_ctss_fwd Saos-2W/AscorbicAcidBgp_08hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_forward 0 1265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep1%20%28A1%20T11%29.CNhs12392.12673-135A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12673-135A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_tpm_fwd Saos-2W/AscorbicAcidBgp_08hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_forward 1 1265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep1%20%28A1%20T11%29.CNhs12392.12673-135A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12673-135A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116NrsfV0422111RawRep1 HCT NRSF V11 1 bigWig 1.000000 6479.000000 HCT-116 NRSF v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1266 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 NRSF v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT NRSF V11 1\ subGroups view=RawSignal factor=NRSF cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116NrsfV0422111RawRep1\ type bigWig 1.000000 6479.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_ctss_rev Saos-2W/AscorbicAcidBgp_08hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_reverse 0 1266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep1%20%28A1%20T11%29.CNhs12392.12673-135A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12673-135A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_tpm_rev Saos-2W/AscorbicAcidBgp_08hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_reverse 1 1266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep1%20%28A1%20T11%29.CNhs12392.12673-135A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12673-135A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116NrsfV0422111PkRep2 HCT NRSF V11 2 broadPeak HCT-116 NRSF v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1267 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 NRSF v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT NRSF V11 2\ subGroups view=Peaks factor=NRSF cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116NrsfV0422111PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_ctss_fwd Saos-2W/AscorbicAcidBgp_08hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_forward 0 1267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep2%20%28A2%20T11%29.CNhs12871.12771-136C8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12771-136C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_tpm_fwd Saos-2W/AscorbicAcidBgp_08hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_forward 1 1267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep2%20%28A2%20T11%29.CNhs12871.12771-136C8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12771-136C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116NrsfV0422111RawRep2 HCT NRSF V11 2 bigWig 1.000000 4061.000000 HCT-116 NRSF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1268 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 NRSF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT NRSF V11 2\ subGroups view=RawSignal factor=NRSF cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116NrsfV0422111RawRep2\ type bigWig 1.000000 4061.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_ctss_rev Saos-2W/AscorbicAcidBgp_08hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_reverse 0 1268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep2%20%28A2%20T11%29.CNhs12871.12771-136C8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12771-136C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_tpm_rev Saos-2W/AscorbicAcidBgp_08hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_reverse 1 1268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep2%20%28A2%20T11%29.CNhs12871.12771-136C8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12771-136C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Pol24h8V0416101PkRep1 HCT Pol2-4H8 V101 1 broadPeak HCT-116 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1269 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT Pol2-4H8 V101 1\ subGroups view=Peaks factor=POL24H8 cellType=t3HCT116 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Pol24h8V0416101PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_ctss_fwd Saos-2W/AscorbicAcidBgp_08hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_forward 0 1269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep3%20%28A3%20T11%29.CNhs12885.12869-137E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12869-137E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_tpm_fwd Saos-2W/AscorbicAcidBgp_08hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_forward 1 1269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep3%20%28A3%20T11%29.CNhs12885.12869-137E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12869-137E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Pol24h8V0416101RawRep1 HCT Pol2-4H8 V101 1 bigWig 0.234700 237.751007 HCT-116 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1270 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT Pol2-4H8 V101 1\ subGroups view=RawSignal factor=POL24H8 cellType=t3HCT116 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Pol24h8V0416101RawRep1\ type bigWig 0.234700 237.751007\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_ctss_rev Saos-2W/AscorbicAcidBgp_08hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_reverse 0 1270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep3%20%28A3%20T11%29.CNhs12885.12869-137E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12869-137E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_tpm_rev Saos-2W/AscorbicAcidBgp_08hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_reverse 1 1270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep3%20%28A3%20T11%29.CNhs12885.12869-137E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12869-137E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Pol24h8V0416101PkRep2 HCT Pol2-4H8 V101 2 broadPeak HCT-116 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1271 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT Pol2-4H8 V101 2\ subGroups view=Peaks factor=POL24H8 cellType=t3HCT116 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Pol24h8V0416101PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_ctss_fwd Saos-2W/AscorbicAcidBgp_24hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_forward 0 1271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep1%20%28A1%20T12%29.CNhs12393.12674-135B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12674-135B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_tpm_fwd Saos-2W/AscorbicAcidBgp_24hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_forward 1 1271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep1%20%28A1%20T12%29.CNhs12393.12674-135B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12674-135B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Pol24h8V0416101RawRep2 HCT Pol2-4H8 V101 2 bigWig 0.155121 194.289001 HCT-116 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1272 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT Pol2-4H8 V101 2\ subGroups view=RawSignal factor=POL24H8 cellType=t3HCT116 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Pol24h8V0416101RawRep2\ type bigWig 0.155121 194.289001\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_ctss_rev Saos-2W/AscorbicAcidBgp_24hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_reverse 0 1272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep1%20%28A1%20T12%29.CNhs12393.12674-135B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12674-135B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_tpm_rev Saos-2W/AscorbicAcidBgp_24hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_reverse 1 1272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep1%20%28A1%20T12%29.CNhs12393.12674-135B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12674-135B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Rad21V0422111PkRep1 HCT RAD21 V11 1 broadPeak HCT-116 RAD21 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1273 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 RAD21 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT RAD21 V11 1\ subGroups view=Peaks factor=RAD21 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Rad21V0422111PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_ctss_fwd Saos-2W/AscorbicAcidBgp_24hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_forward 0 1273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep2%20%28A2%20T12%29.CNhs12872.12772-136C9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12772-136C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_tpm_fwd Saos-2W/AscorbicAcidBgp_24hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_forward 1 1273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep2%20%28A2%20T12%29.CNhs12872.12772-136C9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12772-136C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Rad21V0422111RawRep1 HCT RAD21 V11 1 bigWig 1.000000 8080.000000 HCT-116 RAD21 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1274 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 RAD21 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT RAD21 V11 1\ subGroups view=RawSignal factor=RAD21 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Rad21V0422111RawRep1\ type bigWig 1.000000 8080.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_ctss_rev Saos-2W/AscorbicAcidBgp_24hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_reverse 0 1274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep2%20%28A2%20T12%29.CNhs12872.12772-136C9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12772-136C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_tpm_rev Saos-2W/AscorbicAcidBgp_24hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_reverse 1 1274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep2%20%28A2%20T12%29.CNhs12872.12772-136C9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12772-136C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Rad21V0422111PkRep2 HCT RAD21 V11 2 broadPeak HCT-116 RAD21 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1275 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 RAD21 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT RAD21 V11 2\ subGroups view=Peaks factor=RAD21 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Rad21V0422111PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_ctss_fwd Saos-2W/AscorbicAcidBgp_24hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_forward 0 1275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep3%20%28A3%20T12%29.CNhs12886.12870-137E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12870-137E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_tpm_fwd Saos-2W/AscorbicAcidBgp_24hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_forward 1 1275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep3%20%28A3%20T12%29.CNhs12886.12870-137E8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12870-137E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Rad21V0422111RawRep2 HCT RAD21 V11 2 bigWig 1.000000 8321.000000 HCT-116 RAD21 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1276 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 RAD21 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT RAD21 V11 2\ subGroups view=RawSignal factor=RAD21 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Rad21V0422111RawRep2\ type bigWig 1.000000 8321.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_ctss_rev Saos-2W/AscorbicAcidBgp_24hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_reverse 0 1276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep3%20%28A3%20T12%29.CNhs12886.12870-137E8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12870-137E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_tpm_rev Saos-2W/AscorbicAcidBgp_24hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_reverse 1 1276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep3%20%28A3%20T12%29.CNhs12886.12870-137E8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12870-137E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Sin3ak20V0422111PkRep1 HCT Sin3A V11 1 broadPeak HCT-116 Sin3Ak-20 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1277 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 Sin3Ak-20 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT Sin3A V11 1\ subGroups view=Peaks factor=SIN3AK20 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Sin3ak20V0422111PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_ctss_fwd Saos-2W/AscorbicAcidBgp_Day04Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_forward 0 1277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep1%20%28A1%20T13%29.CNhs12394.12675-135B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12675-135B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_tpm_fwd Saos-2W/AscorbicAcidBgp_Day04Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_forward 1 1277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep1%20%28A1%20T13%29.CNhs12394.12675-135B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12675-135B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Sin3ak20V0422111RawRep1 HCT Sin3A V11 1 bigWig 1.000000 7001.000000 HCT-116 Sin3Ak-20 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1278 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 Sin3Ak-20 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT Sin3A V11 1\ subGroups view=RawSignal factor=SIN3AK20 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Sin3ak20V0422111RawRep1\ type bigWig 1.000000 7001.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_ctss_rev Saos-2W/AscorbicAcidBgp_Day04Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_reverse 0 1278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep1%20%28A1%20T13%29.CNhs12394.12675-135B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12675-135B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_tpm_rev Saos-2W/AscorbicAcidBgp_Day04Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_reverse 1 1278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep1%20%28A1%20T13%29.CNhs12394.12675-135B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12675-135B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Sin3ak20V0422111PkRep2 HCT Sin3A V11 2 broadPeak HCT-116 Sin3Ak-20 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1279 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 Sin3Ak-20 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT Sin3A V11 2\ subGroups view=Peaks factor=SIN3AK20 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Sin3ak20V0422111PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_ctss_fwd Saos-2W/AscorbicAcidBgp_Day04Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_forward 0 1279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep2%20%28A2%20T13%29.CNhs12873.12773-136D1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12773-136D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_tpm_fwd Saos-2W/AscorbicAcidBgp_Day04Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_forward 1 1279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep2%20%28A2%20T13%29.CNhs12873.12773-136D1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12773-136D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Sin3ak20V0422111RawRep2 HCT Sin3A V11 2 bigWig 1.000000 6344.000000 HCT-116 Sin3Ak-20 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1280 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 Sin3Ak-20 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT Sin3A V11 2\ subGroups view=RawSignal factor=SIN3AK20 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Sin3ak20V0422111RawRep2\ type bigWig 1.000000 6344.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_ctss_rev Saos-2W/AscorbicAcidBgp_Day04Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_reverse 0 1280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep2%20%28A2%20T13%29.CNhs12873.12773-136D1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12773-136D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_tpm_rev Saos-2W/AscorbicAcidBgp_Day04Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_reverse 1 1280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep2%20%28A2%20T13%29.CNhs12873.12773-136D1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12773-136D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Sp1V0422111PkRep1 HCT SP1 V11 1 broadPeak HCT-116 SP1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1281 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 SP1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT SP1 V11 1\ subGroups view=Peaks factor=SP1 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Sp1V0422111PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_ctss_fwd Saos-2W/AscorbicAcidBgp_Day04Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_forward 0 1281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep3%20%28A3%20T13%29.CNhs12887.12871-137E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12871-137E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_tpm_fwd Saos-2W/AscorbicAcidBgp_Day04Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_forward 1 1281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep3%20%28A3%20T13%29.CNhs12887.12871-137E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12871-137E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Sp1V0422111RawRep1 HCT SP1 V11 1 bigWig 1.000000 5064.000000 HCT-116 SP1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1282 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 SP1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT SP1 V11 1\ subGroups view=RawSignal factor=SP1 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Sp1V0422111RawRep1\ type bigWig 1.000000 5064.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_ctss_rev Saos-2W/AscorbicAcidBgp_Day04Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_reverse 0 1282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep3%20%28A3%20T13%29.CNhs12887.12871-137E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12871-137E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_tpm_rev Saos-2W/AscorbicAcidBgp_Day04Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_reverse 1 1282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep3%20%28A3%20T13%29.CNhs12887.12871-137E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12871-137E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Sp1V0422111PkRep2 HCT SP1 V11 2 broadPeak HCT-116 SP1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1283 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 SP1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT SP1 V11 2\ subGroups view=Peaks factor=SP1 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Sp1V0422111PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_ctss_fwd Saos-2W/AscorbicAcidBgp_Day07Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_forward 0 1283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep1%20%28A1%20T14%29.CNhs12395.12676-135B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12676-135B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_tpm_fwd Saos-2W/AscorbicAcidBgp_Day07Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_forward 1 1283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep1%20%28A1%20T14%29.CNhs12395.12676-135B3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12676-135B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Sp1V0422111RawRep2 HCT SP1 V11 2 bigWig 1.000000 7103.000000 HCT-116 SP1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1284 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 SP1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT SP1 V11 2\ subGroups view=RawSignal factor=SP1 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Sp1V0422111RawRep2\ type bigWig 1.000000 7103.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_ctss_rev Saos-2W/AscorbicAcidBgp_Day07Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_reverse 0 1284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep1%20%28A1%20T14%29.CNhs12395.12676-135B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12676-135B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_tpm_rev Saos-2W/AscorbicAcidBgp_Day07Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_reverse 1 1284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep1%20%28A1%20T14%29.CNhs12395.12676-135B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12676-135B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116SrfV0422111PkRep1 HCT SRF V11 1 broadPeak HCT-116 SRF v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1285 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 SRF v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT SRF V11 1\ subGroups view=Peaks factor=SRF cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116SrfV0422111PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_ctss_fwd Saos-2W/AscorbicAcidBgp_Day07Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_forward 0 1285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep2%20%28A2%20T14%29.CNhs12874.12774-136D2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12774-136D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_tpm_fwd Saos-2W/AscorbicAcidBgp_Day07Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_forward 1 1285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep2%20%28A2%20T14%29.CNhs12874.12774-136D2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12774-136D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116SrfV0422111RawRep1 HCT SRF V11 1 bigWig 1.000000 8726.000000 HCT-116 SRF v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1286 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 SRF v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT SRF V11 1\ subGroups view=RawSignal factor=SRF cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116SrfV0422111RawRep1\ type bigWig 1.000000 8726.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_ctss_rev Saos-2W/AscorbicAcidBgp_Day07Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_reverse 0 1286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep2%20%28A2%20T14%29.CNhs12874.12774-136D2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12774-136D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_tpm_rev Saos-2W/AscorbicAcidBgp_Day07Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_reverse 1 1286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep2%20%28A2%20T14%29.CNhs12874.12774-136D2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12774-136D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116SrfV0422111PkRep2 HCT SRF V11 2 broadPeak HCT-116 SRF v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1287 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 SRF v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT SRF V11 2\ subGroups view=Peaks factor=SRF cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116SrfV0422111PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_ctss_fwd Saos-2W/AscorbicAcidBgp_Day07Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_forward 0 1287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep3%20%28A3%20T14%29.CNhs12888.12872-137F1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12872-137F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_tpm_fwd Saos-2W/AscorbicAcidBgp_Day07Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_forward 1 1287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep3%20%28A3%20T14%29.CNhs12888.12872-137F1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12872-137F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116SrfV0422111RawRep2 HCT SRF V11 2 bigWig 1.000000 6853.000000 HCT-116 SRF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1288 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 SRF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT SRF V11 2\ subGroups view=RawSignal factor=SRF cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116SrfV0422111RawRep2\ type bigWig 1.000000 6853.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_ctss_rev Saos-2W/AscorbicAcidBgp_Day07Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_reverse 0 1288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep3%20%28A3%20T14%29.CNhs12888.12872-137F1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12872-137F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_tpm_rev Saos-2W/AscorbicAcidBgp_Day07Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_reverse 1 1288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep3%20%28A3%20T14%29.CNhs12888.12872-137F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12872-137F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Tead4sc101184V0422111PkRep1 HCT TEAD4 V11 1 broadPeak HCT-116 TEAD4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1289 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 TEAD4 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT TEAD4 V11 1\ subGroups view=Peaks factor=TEAD4SC101184 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Tead4sc101184V0422111PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_ctss_fwd Saos-2W/AscorbicAcidBgp_Day14Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_forward 0 1289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep1%20%28A1%20T15%29.CNhs12396.12677-135B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12677-135B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_tpm_fwd Saos-2W/AscorbicAcidBgp_Day14Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_forward 1 1289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep1%20%28A1%20T15%29.CNhs12396.12677-135B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12677-135B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Tead4sc101184V0422111RawRep1 HCT TEAD4 V11 1 bigWig 1.000000 1790.000000 HCT-116 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1290 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT TEAD4 V11 1\ subGroups view=RawSignal factor=TEAD4SC101184 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Tead4sc101184V0422111RawRep1\ type bigWig 1.000000 1790.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_ctss_rev Saos-2W/AscorbicAcidBgp_Day14Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_reverse 0 1290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep1%20%28A1%20T15%29.CNhs12396.12677-135B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12677-135B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_tpm_rev Saos-2W/AscorbicAcidBgp_Day14Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_reverse 1 1290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep1%20%28A1%20T15%29.CNhs12396.12677-135B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12677-135B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Tead4sc101184V0422111PkRep2 HCT TEAD4 V11 2 broadPeak HCT-116 TEAD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1291 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 TEAD4 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT TEAD4 V11 2\ subGroups view=Peaks factor=TEAD4SC101184 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Tead4sc101184V0422111PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_ctss_fwd Saos-2W/AscorbicAcidBgp_Day14Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_forward 0 1291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep2%20%28A2%20T15%29.CNhs12953.12775-136D3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12775-136D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_tpm_fwd Saos-2W/AscorbicAcidBgp_Day14Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_forward 1 1291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep2%20%28A2%20T15%29.CNhs12953.12775-136D3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12775-136D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Tead4sc101184V0422111RawRep2 HCT TEAD4 V11 2 bigWig 1.000000 1393.000000 HCT-116 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1292 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 TEAD4 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT TEAD4 V11 2\ subGroups view=RawSignal factor=TEAD4SC101184 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Tead4sc101184V0422111RawRep2\ type bigWig 1.000000 1393.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_ctss_rev Saos-2W/AscorbicAcidBgp_Day14Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_reverse 0 1292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep2%20%28A2%20T15%29.CNhs12953.12775-136D3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12775-136D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_tpm_rev Saos-2W/AscorbicAcidBgp_Day14Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_reverse 1 1292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep2%20%28A2%20T15%29.CNhs12953.12775-136D3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12775-136D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Usf1V0422111PkRep1 HCT USF1 V11 1 broadPeak HCT-116 USF-1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1293 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 USF-1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT USF1 V11 1\ subGroups view=Peaks factor=USF1 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Usf1V0422111PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_ctss_fwd Saos-2W/AscorbicAcidBgp_Day14Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_forward 0 1293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep3%20%28A3%20T15%29.CNhs12890.12873-137F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12873-137F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_tpm_fwd Saos-2W/AscorbicAcidBgp_Day14Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_forward 1 1293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep3%20%28A3%20T15%29.CNhs12890.12873-137F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12873-137F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Usf1V0422111RawRep1 HCT USF1 V11 1 bigWig 1.000000 5503.000000 HCT-116 USF-1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1294 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 USF-1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT USF1 V11 1\ subGroups view=RawSignal factor=USF1 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Usf1V0422111RawRep1\ type bigWig 1.000000 5503.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_ctss_rev Saos-2W/AscorbicAcidBgp_Day14Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_reverse 0 1294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep3%20%28A3%20T15%29.CNhs12890.12873-137F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12873-137F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_tpm_rev Saos-2W/AscorbicAcidBgp_Day14Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_reverse 1 1294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep3%20%28A3%20T15%29.CNhs12890.12873-137F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12873-137F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Usf1V0422111PkRep2 HCT USF1 V11 2 broadPeak HCT-116 USF-1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1295 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 USF-1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT USF1 V11 2\ subGroups view=Peaks factor=USF1 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Usf1V0422111PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_ctss_fwd Saos-2W/AscorbicAcidBgp_Day21Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_forward 0 1295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep1%20%28A1%20T16%29.CNhs12397.12678-135B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12678-135B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_tpm_fwd Saos-2W/AscorbicAcidBgp_Day21Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_forward 1 1295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep1%20%28A1%20T16%29.CNhs12397.12678-135B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12678-135B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Usf1V0422111RawRep2 HCT USF1 V11 2 bigWig 1.000000 1510.000000 HCT-116 USF-1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1296 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 USF-1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT USF1 V11 2\ subGroups view=RawSignal factor=USF1 cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Usf1V0422111RawRep2\ type bigWig 1.000000 1510.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_ctss_rev Saos-2W/AscorbicAcidBgp_Day21Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_reverse 0 1296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep1%20%28A1%20T16%29.CNhs12397.12678-135B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12678-135B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_tpm_rev Saos-2W/AscorbicAcidBgp_Day21Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_reverse 1 1296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep1%20%28A1%20T16%29.CNhs12397.12678-135B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12678-135B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Yy1sc281V0416101PkRep1 HCT YY1 V101 1 broadPeak HCT-116 YY1 281 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1297 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 YY1 281 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT YY1 V101 1\ subGroups view=Peaks factor=YY1SC281 cellType=t3HCT116 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Yy1sc281V0416101PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_ctss_fwd Saos-2W/AscorbicAcidBgp_Day21Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_forward 0 1297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep2%20%28A2%20T16%29.CNhs12875.12776-136D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12776-136D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_tpm_fwd Saos-2W/AscorbicAcidBgp_Day21Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_forward 1 1297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep2%20%28A2%20T16%29.CNhs12875.12776-136D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12776-136D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Yy1sc281V0416101RawRep1 HCT YY1 V101 1 bigWig 0.506734 1499.550049 HCT-116 YY1 281 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1298 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 YY1 281 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT YY1 V101 1\ subGroups view=RawSignal factor=YY1SC281 cellType=t3HCT116 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Yy1sc281V0416101RawRep1\ type bigWig 0.506734 1499.550049\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_ctss_rev Saos-2W/AscorbicAcidBgp_Day21Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_reverse 0 1298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep2%20%28A2%20T16%29.CNhs12875.12776-136D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12776-136D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_tpm_rev Saos-2W/AscorbicAcidBgp_Day21Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_reverse 1 1298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep2%20%28A2%20T16%29.CNhs12875.12776-136D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12776-136D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Yy1sc281V0416101PkRep2 HCT YY1 V101 2 broadPeak HCT-116 YY1 281 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1299 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 YY1 281 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT YY1 V101 2\ subGroups view=Peaks factor=YY1SC281 cellType=t3HCT116 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Yy1sc281V0416101PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep3A3T16_CNhs12891_ctss_fwd Saos-2W/AscorbicAcidBgp_Day21Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_forward 0 1299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep3%20%28A3%20T16%29.CNhs12891.12874-137F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12874-137F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep3A3T16_CNhs12891_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep3A3T16_CNhs12891_tpm_fwd Saos-2W/AscorbicAcidBgp_Day21Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_forward 1 1299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep3%20%28A3%20T16%29.CNhs12891.12874-137F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12874-137F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep3A3T16_CNhs12891_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Yy1sc281V0416101RawRep2 HCT YY1 V101 2 bigWig 0.226021 718.012024 HCT-116 YY1 281 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1300 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 YY1 281 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT YY1 V101 2\ subGroups view=RawSignal factor=YY1SC281 cellType=t3HCT116 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Yy1sc281V0416101RawRep2\ type bigWig 0.226021 718.012024\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep3A3T16_CNhs12891_ctss_rev Saos-2W/AscorbicAcidBgp_Day21Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_reverse 0 1300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep3%20%28A3%20T16%29.CNhs12891.12874-137F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12874-137F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep3A3T16_CNhs12891_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep3A3T16_CNhs12891_tpm_rev Saos-2W/AscorbicAcidBgp_Day21Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_reverse 1 1300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep3%20%28A3%20T16%29.CNhs12891.12874-137F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12874-137F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep3A3T16_CNhs12891_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Zbtb33V0416101PkRep1 HCT ZBTB33 1 broadPeak HCT-116 ZBTB33 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1301 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 ZBTB33 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT ZBTB33 1\ subGroups view=Peaks factor=ZBTB33 cellType=t3HCT116 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Zbtb33V0416101PkRep1\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_ctss_fwd Saos-2W/AscorbicAcidBgp_Day28Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_forward 0 1301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep1%20%28A1%20T17%29.CNhs11919.12679-135B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12679-135B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_tpm_fwd Saos-2W/AscorbicAcidBgp_Day28Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_forward 1 1301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep1%20%28A1%20T17%29.CNhs11919.12679-135B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12679-135B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Zbtb33V0416101RawRep1 HCT ZBTB33 1 bigWig 0.169927 168.567993 HCT-116 ZBTB33 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1302 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 ZBTB33 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT ZBTB33 1\ subGroups view=RawSignal factor=ZBTB33 cellType=t3HCT116 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116Zbtb33V0416101RawRep1\ type bigWig 0.169927 168.567993\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_ctss_rev Saos-2W/AscorbicAcidBgp_Day28Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_reverse 0 1302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep1%20%28A1%20T17%29.CNhs11919.12679-135B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12679-135B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_tpm_rev Saos-2W/AscorbicAcidBgp_Day28Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_reverse 1 1302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep1%20%28A1%20T17%29.CNhs11919.12679-135B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12679-135B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Zbtb33V0416101PkRep2 HCT ZBTB33 2 broadPeak HCT-116 ZBTB33 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1303 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HCT-116 ZBTB33 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HCT ZBTB33 2\ subGroups view=Peaks factor=ZBTB33 cellType=t3HCT116 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Zbtb33V0416101PkRep2\ type broadPeak\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_ctss_fwd Saos-2W/AscorbicAcidBgp_Day28Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_forward 0 1303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep2%20%28A2%20T17%29.CNhs12876.12777-136D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12777-136D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_tpm_fwd Saos-2W/AscorbicAcidBgp_Day28Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_forward 1 1303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep2%20%28A2%20T17%29.CNhs12876.12777-136D5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12777-136D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116Zbtb33V0416101RawRep2 HCT ZBTB33 2 bigWig 0.525499 2486.929932 HCT-116 ZBTB33 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1304 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 ZBTB33 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT ZBTB33 2\ subGroups view=RawSignal factor=ZBTB33 cellType=t3HCT116 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116Zbtb33V0416101RawRep2\ type bigWig 0.525499 2486.929932\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_ctss_rev Saos-2W/AscorbicAcidBgp_Day28Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_reverse 0 1304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep2%20%28A2%20T17%29.CNhs12876.12777-136D5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12777-136D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_tpm_rev Saos-2W/AscorbicAcidBgp_Day28Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_reverse 1 1304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep2%20%28A2%20T17%29.CNhs12876.12777-136D5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12777-136D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116RxlchV0416101RawRep1 HCT RvXL V101 1 bigWig 0.146604 179.735992 HCT-116 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1305 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT RvXL V101 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3HCT116 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116RxlchV0416101RawRep1\ type bigWig 0.146604 179.735992\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_ctss_fwd Saos-2W/AscorbicAcidBgp_Day28Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_forward 0 1305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep3%20%28A3%20T17%29.CNhs12892.12875-137F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12875-137F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_tpm_fwd Saos-2W/AscorbicAcidBgp_Day28Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_forward 1 1305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep3%20%28A3%20T17%29.CNhs12892.12875-137F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12875-137F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116RxlchV0422111RawRep1 HCT RvXL V11 1 bigWig 1.000000 56223.000000 HCT-116 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1306 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT RvXL V11 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHct116RxlchV0422111RawRep1\ type bigWig 1.000000 56223.000000\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_ctss_rev Saos-2W/AscorbicAcidBgp_Day28Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_reverse 0 1306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep3%20%28A3%20T17%29.CNhs12892.12875-137F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12875-137F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_tpm_rev Saos-2W/AscorbicAcidBgp_Day28Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_reverse 1 1306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep3%20%28A3%20T17%29.CNhs12892.12875-137F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12875-137F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4\ urlLabel FANTOM5 Details:\ MesodermalTumorCellLineHIRSBM_CNhs12191_ctss_fwd Cl:HIRS-BM+ bigWig mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_forward 0 1307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesodermal%20tumor%20cell%20line%3aHIRS-BM.CNhs12191.10696-109G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10696-109G3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HIRS-BM+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track MesodermalTumorCellLineHIRSBM_CNhs12191_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3\ urlLabel FANTOM5 Details:\ MesodermalTumorCellLineHIRSBM_CNhs12191_tpm_fwd Cl:HIRS-BM+ bigWig mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_forward 1 1307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesodermal%20tumor%20cell%20line%3aHIRS-BM.CNhs12191.10696-109G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10696-109G3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HIRS-BM+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track MesodermalTumorCellLineHIRSBM_CNhs12191_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHct116RxlchV0422111RawRep2 HCT RvXL V11 2 bigWig 1.000000 28381.000000 HCT-116 Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1307 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HCT-116 Control v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HCT RvXL V11 2\ subGroups view=RawSignal factor=zRXLCH cellType=t3HCT116 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHct116RxlchV0422111RawRep2\ type bigWig 1.000000 28381.000000\ MesodermalTumorCellLineHIRSBM_CNhs12191_ctss_rev Cl:HIRS-BM- bigWig mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_reverse 0 1308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesodermal%20tumor%20cell%20line%3aHIRS-BM.CNhs12191.10696-109G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10696-109G3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HIRS-BM-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track MesodermalTumorCellLineHIRSBM_CNhs12191_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3\ urlLabel FANTOM5 Details:\ MesodermalTumorCellLineHIRSBM_CNhs12191_tpm_rev Cl:HIRS-BM- bigWig mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_reverse 1 1308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesodermal%20tumor%20cell%20line%3aHIRS-BM.CNhs12191.10696-109G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10696-109G3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HIRS-BM-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track MesodermalTumorCellLineHIRSBM_CNhs12191_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHl60GabpV0422111PkRep1 HL-60 GABP V11 1 broadPeak HL-60 GABP v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1308 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 GABP v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HL-60 GABP V11 1\ subGroups view=Peaks factor=GABP cellType=t3HL60 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHl60GabpV0422111PkRep1\ type broadPeak\ LeiomyosarcomaCellLineHs5_T_CNhs12192_ctss_fwd Cl:Hs5_T+ bigWig leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_forward 0 1309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyosarcoma%20cell%20line%3aHs%205%2eT.CNhs12192.10722-110A2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10722-110A2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs5_T+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track LeiomyosarcomaCellLineHs5_T_CNhs12192_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2\ urlLabel FANTOM5 Details:\ LeiomyosarcomaCellLineHs5_T_CNhs12192_tpm_fwd Cl:Hs5_T+ bigWig leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_forward 1 1309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyosarcoma%20cell%20line%3aHs%205%2eT.CNhs12192.10722-110A2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10722-110A2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs5_T+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track LeiomyosarcomaCellLineHs5_T_CNhs12192_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHl60GabpV0422111RawRep1 HL-60 GABP V11 1 bigWig 1.000000 2845.000000 HL-60 GABP v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1309 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HL-60 GABP v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HL-60 GABP V11 1\ subGroups view=RawSignal factor=GABP cellType=t3HL60 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHl60GabpV0422111RawRep1\ type bigWig 1.000000 2845.000000\ LeiomyosarcomaCellLineHs5_T_CNhs12192_ctss_rev Cl:Hs5_T- bigWig leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_reverse 0 1310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyosarcoma%20cell%20line%3aHs%205%2eT.CNhs12192.10722-110A2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10722-110A2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs5_T-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track LeiomyosarcomaCellLineHs5_T_CNhs12192_ctss_rev\ type bigWig\ url 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regulation 1 longLabel HL-60 GABP v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HL-60 GABP V11 2\ subGroups view=Peaks factor=GABP cellType=t3HL60 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHl60GabpV0422111PkRep2\ type broadPeak\ AcuteMyeloidLeukemiaFABM0CellLineKasumi3_CNhs13241_ctss_fwd Cl:Kasumi-3+ bigWig acute myeloid leukemia (FAB M0) cell line:Kasumi-3_CNhs13241_10789-110H6_forward 0 1311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10789-110H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M0%29%20cell%20line%3aKasumi-3.CNhs13241.10789-110H6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M0) cell line:Kasumi-3_CNhs13241_10789-110H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10789-110H6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Kasumi-3+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM0CellLineKasumi3_CNhs13241_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10789-110H6\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM0CellLineKasumi3_CNhs13241_tpm_fwd Cl:Kasumi-3+ bigWig acute myeloid leukemia (FAB M0) cell line:Kasumi-3_CNhs13241_10789-110H6_forward 1 1311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10789-110H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M0%29%20cell%20line%3aKasumi-3.CNhs13241.10789-110H6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M0) cell line:Kasumi-3_CNhs13241_10789-110H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10789-110H6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Kasumi-3+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM0CellLineKasumi3_CNhs13241_tpm_fwd\ type bigWig\ url 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metadata ontology_id=10789-110H6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Kasumi-3-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM0CellLineKasumi3_CNhs13241_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10789-110H6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHl60NrsfV0422111PkRep1 HL-60 NRSF V11 1 broadPeak HL-60 NRSF v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1312 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 NRSF v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HL-60 NRSF V11 1\ subGroups view=Peaks factor=NRSF cellType=t3HL60 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHl60NrsfV0422111PkRep1\ type broadPeak\ MesotheliomaCellLineMero14TechRep2_CNhs14376_ctss_fwd Cl:Mero-14Tr2+ bigWig mesothelioma cell line:Mero-14, tech_rep2_CNhs14376_10849-111F3_forward 0 1313 255 0 0 255 127 127 0 0 0 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/gbdb/hg19/fantom5/mesothelioma%20cell%20line%3aMero-14%2c%20tech_rep2.CNhs14376.10849-111F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-14, tech_rep2_CNhs14376_10849-111F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10849-111F3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-14Tr2+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero14TechRep2_CNhs14376_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHl60NrsfV0422111RawRep1 HL-60 NRSF V11 1 bigWig 1.000000 7770.000000 HL-60 NRSF v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1313 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HL-60 NRSF v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HL-60 NRSF V11 1\ subGroups view=RawSignal factor=NRSF cellType=t3HL60 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHl60NrsfV0422111RawRep1\ type bigWig 1.000000 7770.000000\ MesotheliomaCellLineMero14TechRep2_CNhs14376_ctss_rev Cl:Mero-14Tr2- bigWig mesothelioma cell line:Mero-14, tech_rep2_CNhs14376_10849-111F3_reverse 0 1314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesothelioma%20cell%20line%3aMero-14%2c%20tech_rep2.CNhs14376.10849-111F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-14, tech_rep2_CNhs14376_10849-111F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10849-111F3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-14Tr2-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero14TechRep2_CNhs14376_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero14TechRep2_CNhs14376_tpm_rev Cl:Mero-14Tr2- bigWig mesothelioma cell line:Mero-14, tech_rep2_CNhs14376_10849-111F3_reverse 1 1314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesothelioma%20cell%20line%3aMero-14%2c%20tech_rep2.CNhs14376.10849-111F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-14, tech_rep2_CNhs14376_10849-111F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10849-111F3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-14Tr2-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero14TechRep2_CNhs14376_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHl60NrsfV0422111PkRep2 HL-60 NRSF V11 2 broadPeak HL-60 NRSF v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1314 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 NRSF v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HL-60 NRSF V11 2\ subGroups view=Peaks factor=NRSF cellType=t3HL60 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHl60NrsfV0422111PkRep2\ type broadPeak\ NonsmallCellLungCancerCellLineNCIH1385_CNhs12193_ctss_fwd Cl:NCI-H1385+ bigWig non-small cell lung cancer cell line:NCI-H1385_CNhs12193_10730-110B1_forward 0 1315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10730-110B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/non-small%20cell%20lung%20cancer%20cell%20line%3aNCI-H1385.CNhs12193.10730-110B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel non-small cell lung cancer cell line:NCI-H1385_CNhs12193_10730-110B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10730-110B1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H1385+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track NonsmallCellLungCancerCellLineNCIH1385_CNhs12193_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10730-110B1\ urlLabel FANTOM5 Details:\ NonsmallCellLungCancerCellLineNCIH1385_CNhs12193_tpm_fwd Cl:NCI-H1385+ bigWig non-small cell lung cancer cell line:NCI-H1385_CNhs12193_10730-110B1_forward 1 1315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10730-110B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/non-small%20cell%20lung%20cancer%20cell%20line%3aNCI-H1385.CNhs12193.10730-110B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel non-small cell lung cancer cell line:NCI-H1385_CNhs12193_10730-110B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10730-110B1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H1385+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track NonsmallCellLungCancerCellLineNCIH1385_CNhs12193_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10730-110B1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHl60NrsfV0422111RawRep2 HL-60 NRSF V11 2 bigWig 1.000000 5614.000000 HL-60 NRSF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1315 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HL-60 NRSF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HL-60 NRSF V11 2\ subGroups view=RawSignal factor=NRSF cellType=t3HL60 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHl60NrsfV0422111RawRep2\ type bigWig 1.000000 5614.000000\ NonsmallCellLungCancerCellLineNCIH1385_CNhs12193_ctss_rev Cl:NCI-H1385- bigWig non-small cell lung cancer cell line:NCI-H1385_CNhs12193_10730-110B1_reverse 0 1316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10730-110B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/non-small%20cell%20lung%20cancer%20cell%20line%3aNCI-H1385.CNhs12193.10730-110B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel non-small cell lung cancer cell line:NCI-H1385_CNhs12193_10730-110B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10730-110B1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H1385-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track NonsmallCellLungCancerCellLineNCIH1385_CNhs12193_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10730-110B1\ urlLabel FANTOM5 Details:\ NonsmallCellLungCancerCellLineNCIH1385_CNhs12193_tpm_rev Cl:NCI-H1385- bigWig non-small cell lung cancer cell line:NCI-H1385_CNhs12193_10730-110B1_reverse 1 1316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10730-110B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/non-small%20cell%20lung%20cancer%20cell%20line%3aNCI-H1385.CNhs12193.10730-110B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel non-small cell lung cancer cell line:NCI-H1385_CNhs12193_10730-110B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10730-110B1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H1385-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track NonsmallCellLungCancerCellLineNCIH1385_CNhs12193_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10730-110B1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHl60Pol24h8V0422111PkRep1 HL-60 Pol2-4H8 V11 1 broadPeak HL-60 Pol2-4H8 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1316 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 Pol2-4H8 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HL-60 Pol2-4H8 V11 1\ subGroups view=Peaks factor=POL24H8 cellType=t3HL60 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHl60Pol24h8V0422111PkRep1\ type broadPeak\ LeiomyomaCellLine10964C_CNhs11722_ctss_fwd Cl:10964C+ bigWig leiomyoma cell line:10964C_CNhs11722_10569-108B2_forward 0 1317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10569-108B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyoma%20cell%20line%3a10964C.CNhs11722.10569-108B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel leiomyoma cell 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LeiomyomaCellLine10964C_CNhs11722_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10569-108B2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHl60Pol24h8V0422111RawRep1 HL-60 Pol2-4H8 V11 1 bigWig 1.000000 1733.000000 HL-60 Pol2-4H8 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1317 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HL-60 Pol2-4H8 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HL-60 Pol2-4H8 V11 1\ subGroups view=RawSignal factor=POL24H8 cellType=t3HL60 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHl60Pol24h8V0422111RawRep1\ type bigWig 1.000000 1733.000000\ LeiomyomaCellLine10964C_CNhs11722_ctss_rev Cl:10964C- bigWig leiomyoma cell line:10964C_CNhs11722_10569-108B2_reverse 0 1318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10569-108B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyoma%20cell%20line%3a10964C.CNhs11722.10569-108B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel leiomyoma cell line:10964C_CNhs11722_10569-108B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10569-108B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:10964C-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyomaCellLine10964C_CNhs11722_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10569-108B2\ urlLabel FANTOM5 Details:\ LeiomyomaCellLine10964C_CNhs11722_tpm_rev Cl:10964C- bigWig leiomyoma cell line:10964C_CNhs11722_10569-108B2_reverse 1 1318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10569-108B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyoma%20cell%20line%3a10964C.CNhs11722.10569-108B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel leiomyoma cell line:10964C_CNhs11722_10569-108B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10569-108B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:10964C-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyomaCellLine10964C_CNhs11722_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10569-108B2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHl60Pol24h8V0422111PkRep2 HL-60 Pol2-4H8 V11 2 broadPeak HL-60 Pol2-4H8 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1318 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 Pol2-4H8 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HL-60 Pol2-4H8 V11 2\ subGroups view=Peaks factor=POL24H8 cellType=t3HL60 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHl60Pol24h8V0422111PkRep2\ type broadPeak\ OsteosarcomaCellLine143BTKneoR_CNhs11279_ctss_fwd Cl:143B/TK^(-)neo^(R)+ bigWig osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_forward 0 1319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/osteosarcoma%20cell%20line%3a143B%20TK%5e%28-%29neo%5e%28R%29.CNhs11279.10510-107D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10510-107D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:143B/TK^(-)neo^(R)+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OsteosarcomaCellLine143BTKneoR_CNhs11279_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6\ urlLabel FANTOM5 Details:\ OsteosarcomaCellLine143BTKneoR_CNhs11279_tpm_fwd Cl:143B/TK^(-)neo^(R)+ bigWig osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_forward 1 1319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/osteosarcoma%20cell%20line%3a143B%20TK%5e%28-%29neo%5e%28R%29.CNhs11279.10510-107D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10510-107D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:143B/TK^(-)neo^(R)+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OsteosarcomaCellLine143BTKneoR_CNhs11279_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHl60Pol24h8V0422111RawRep2 HL-60 Pol2-4H8 V11 2 bigWig 1.000000 2121.000000 HL-60 Pol2-4H8 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1319 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HL-60 Pol2-4H8 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HL-60 Pol2-4H8 V11 2\ subGroups view=RawSignal factor=POL24H8 cellType=t3HL60 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHl60Pol24h8V0422111RawRep2\ type bigWig 1.000000 2121.000000\ OsteosarcomaCellLine143BTKneoR_CNhs11279_ctss_rev Cl:143B/TK^(-)neo^(R)- bigWig osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_reverse 0 1320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/osteosarcoma%20cell%20line%3a143B%20TK%5e%28-%29neo%5e%28R%29.CNhs11279.10510-107D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10510-107D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:143B/TK^(-)neo^(R)-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OsteosarcomaCellLine143BTKneoR_CNhs11279_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6\ urlLabel FANTOM5 Details:\ OsteosarcomaCellLine143BTKneoR_CNhs11279_tpm_rev Cl:143B/TK^(-)neo^(R)- bigWig osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_reverse 1 1320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/osteosarcoma%20cell%20line%3a143B%20TK%5e%28-%29neo%5e%28R%29.CNhs11279.10510-107D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10510-107D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:143B/TK^(-)neo^(R)-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OsteosarcomaCellLine143BTKneoR_CNhs11279_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHl60Pu1V0422111PkRep1 HL-60 PU.1 V11 1 broadPeak HL-60 PU.1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1320 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 PU.1 v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HL-60 PU.1 V11 1\ subGroups view=Peaks factor=PU1 cellType=t3HL60 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHl60Pu1V0422111PkRep1\ type broadPeak\ LeiomyomaCellLine15242A_CNhs11723_ctss_fwd Cl:15242A+ bigWig leiomyoma cell line:15242A_CNhs11723_10570-108B3_forward 0 1321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10570-108B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyoma%20cell%20line%3a15242A.CNhs11723.10570-108B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel leiomyoma cell line:15242A_CNhs11723_10570-108B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10570-108B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:15242A+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LeiomyomaCellLine15242A_CNhs11723_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10570-108B3\ urlLabel FANTOM5 Details:\ LeiomyomaCellLine15242A_CNhs11723_tpm_fwd Cl:15242A+ bigWig leiomyoma cell line:15242A_CNhs11723_10570-108B3_forward 1 1321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10570-108B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyoma%20cell%20line%3a15242A.CNhs11723.10570-108B3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel leiomyoma cell line:15242A_CNhs11723_10570-108B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10570-108B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:15242A+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LeiomyomaCellLine15242A_CNhs11723_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10570-108B3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHl60Pu1V0422111RawRep1 HL-60 PU.1 V11 1 bigWig 1.000000 3580.000000 HL-60 PU.1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1321 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HL-60 PU.1 v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HL-60 PU.1 V11 1\ subGroups view=RawSignal factor=PU1 cellType=t3HL60 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHl60Pu1V0422111RawRep1\ type bigWig 1.000000 3580.000000\ LeiomyomaCellLine15242A_CNhs11723_ctss_rev Cl:15242A- bigWig leiomyoma cell line:15242A_CNhs11723_10570-108B3_reverse 0 1322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10570-108B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyoma%20cell%20line%3a15242A.CNhs11723.10570-108B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel leiomyoma cell line:15242A_CNhs11723_10570-108B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10570-108B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:15242A-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyomaCellLine15242A_CNhs11723_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10570-108B3\ urlLabel FANTOM5 Details:\ LeiomyomaCellLine15242A_CNhs11723_tpm_rev Cl:15242A- bigWig leiomyoma cell line:15242A_CNhs11723_10570-108B3_reverse 1 1322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10570-108B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyoma%20cell%20line%3a15242A.CNhs11723.10570-108B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel leiomyoma cell line:15242A_CNhs11723_10570-108B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10570-108B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:15242A-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyomaCellLine15242A_CNhs11723_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10570-108B3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHl60Pu1V0422111PkRep2 HL-60 PU.1 V11 2 broadPeak HL-60 PU.1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1322 0 0 0 127 127 127 0 0 0 regulation 1 longLabel HL-60 PU.1 v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel HL-60 PU.1 V11 2\ subGroups view=Peaks factor=PU1 cellType=t3HL60 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHl60Pu1V0422111PkRep2\ type broadPeak\ LeiomyomaCellLine15425_CNhs11724_ctss_fwd Cl:15425+ bigWig leiomyoma cell line:15425_CNhs11724_10571-108B4_forward 0 1323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10571-108B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyoma%20cell%20line%3a15425.CNhs11724.10571-108B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel leiomyoma cell line:15425_CNhs11724_10571-108B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10571-108B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:15425+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LeiomyomaCellLine15425_CNhs11724_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10571-108B4\ urlLabel FANTOM5 Details:\ LeiomyomaCellLine15425_CNhs11724_tpm_fwd Cl:15425+ bigWig leiomyoma cell line:15425_CNhs11724_10571-108B4_forward 1 1323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10571-108B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyoma%20cell%20line%3a15425.CNhs11724.10571-108B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel leiomyoma cell line:15425_CNhs11724_10571-108B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10571-108B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:15425+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LeiomyomaCellLine15425_CNhs11724_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10571-108B4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHl60Pu1V0422111RawRep2 HL-60 PU.1 V11 2 bigWig 1.000000 2099.000000 HL-60 PU.1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1323 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HL-60 PU.1 v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HL-60 PU.1 V11 2\ subGroups view=RawSignal factor=PU1 cellType=t3HL60 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsHl60Pu1V0422111RawRep2\ type bigWig 1.000000 2099.000000\ LeiomyomaCellLine15425_CNhs11724_ctss_rev Cl:15425- bigWig leiomyoma cell line:15425_CNhs11724_10571-108B4_reverse 0 1324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10571-108B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyoma%20cell%20line%3a15425.CNhs11724.10571-108B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel leiomyoma cell line:15425_CNhs11724_10571-108B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10571-108B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:15425-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyomaCellLine15425_CNhs11724_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10571-108B4\ urlLabel FANTOM5 Details:\ LeiomyomaCellLine15425_CNhs11724_tpm_rev Cl:15425- bigWig leiomyoma cell line:15425_CNhs11724_10571-108B4_reverse 1 1324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10571-108B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyoma%20cell%20line%3a15425.CNhs11724.10571-108B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel leiomyoma cell line:15425_CNhs11724_10571-108B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10571-108B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:15425-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyomaCellLine15425_CNhs11724_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10571-108B4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsHl60RxlchV0422111RawRep1 HL-60 RvXL V11 1 bigWig 1.000000 7779.000000 HL-60 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1324 0 0 0 127 127 127 0 0 0 regulation 0 longLabel HL-60 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel HL-60 RvXL V11 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3HL60 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsHl60RxlchV0422111RawRep1\ type bigWig 1.000000 7779.000000\ EmbryonicPancreasCellLine1B2C6_CNhs11731_ctss_fwd Cl:1B2C6+ bigWig embryonic pancreas cell line:1B2C6_CNhs11731_10604-108F1_forward 0 1325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10604-108F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20pancreas%20cell%20line%3a1B2C6.CNhs11731.10604-108F1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel embryonic pancreas cell line:1B2C6_CNhs11731_10604-108F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10604-108F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:1B2C6+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicPancreasCellLine1B2C6_CNhs11731_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10604-108F1\ urlLabel FANTOM5 Details:\ EmbryonicPancreasCellLine1B2C6_CNhs11731_tpm_fwd Cl:1B2C6+ bigWig embryonic pancreas cell 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EmbryonicPancreasCellLine1B2C6_CNhs11731_tpm_rev Cl:1B2C6- bigWig embryonic pancreas cell line:1B2C6_CNhs11731_10604-108F1_reverse 1 1326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10604-108F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20pancreas%20cell%20line%3a1B2C6.CNhs11731.10604-108F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel embryonic pancreas cell line:1B2C6_CNhs11731_10604-108F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10604-108F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:1B2C6-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicPancreasCellLine1B2C6_CNhs11731_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10604-108F1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1NrsfPcr2xPkRep1 PANC NRSF PCR2 1 broadPeak PANC-1 NRSF PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1326 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 NRSF PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PANC NRSF PCR2 1\ subGroups view=Peaks factor=NRSF cellType=t3PANC1 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPanc1NrsfPcr2xPkRep1\ type broadPeak\ EmbryonicPancreasCellLine1C3D3_CNhs11732_ctss_fwd Cl:1C3D3+ bigWig embryonic pancreas cell line:1C3D3_CNhs11732_10605-108F2_forward 0 1327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10605-108F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20pancreas%20cell%20line%3a1C3D3.CNhs11732.10605-108F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel embryonic pancreas cell line:1C3D3_CNhs11732_10605-108F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10605-108F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:1C3D3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicPancreasCellLine1C3D3_CNhs11732_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10605-108F2\ urlLabel FANTOM5 Details:\ EmbryonicPancreasCellLine1C3D3_CNhs11732_tpm_fwd Cl:1C3D3+ bigWig embryonic pancreas cell line:1C3D3_CNhs11732_10605-108F2_forward 1 1327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10605-108F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20pancreas%20cell%20line%3a1C3D3.CNhs11732.10605-108F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel embryonic pancreas cell line:1C3D3_CNhs11732_10605-108F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10605-108F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:1C3D3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicPancreasCellLine1C3D3_CNhs11732_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10605-108F2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1NrsfPcr2xRawRep1 PANC NRSF PCR2 1 bigWig 0.180934 913.171997 PANC-1 NRSF PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1327 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 NRSF PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PANC NRSF PCR2 1\ subGroups view=RawSignal factor=NRSF cellType=t3PANC1 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPanc1NrsfPcr2xRawRep1\ type bigWig 0.180934 913.171997\ EmbryonicPancreasCellLine1C3D3_CNhs11732_ctss_rev Cl:1C3D3- bigWig embryonic pancreas cell line:1C3D3_CNhs11732_10605-108F2_reverse 0 1328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10605-108F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20pancreas%20cell%20line%3a1C3D3.CNhs11732.10605-108F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel embryonic pancreas cell line:1C3D3_CNhs11732_10605-108F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10605-108F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:1C3D3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicPancreasCellLine1C3D3_CNhs11732_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10605-108F2\ urlLabel FANTOM5 Details:\ EmbryonicPancreasCellLine1C3D3_CNhs11732_tpm_rev Cl:1C3D3- bigWig embryonic pancreas cell line:1C3D3_CNhs11732_10605-108F2_reverse 1 1328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10605-108F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20pancreas%20cell%20line%3a1C3D3.CNhs11732.10605-108F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel embryonic pancreas cell line:1C3D3_CNhs11732_10605-108F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10605-108F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:1C3D3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicPancreasCellLine1C3D3_CNhs11732_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10605-108F2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1NrsfPcr2xPkRep2 PANC NRSF PCR2 2 broadPeak PANC-1 NRSF PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1328 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 NRSF PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PANC NRSF PCR2 2\ subGroups view=Peaks factor=NRSF cellType=t3PANC1 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPanc1NrsfPcr2xPkRep2\ type broadPeak\ EmbryonicPancreasCellLine1C3IKEI_CNhs11733_ctss_fwd Cl:1C3IKEI+ bigWig embryonic pancreas cell line:1C3IKEI_CNhs11733_10606-108F3_forward 0 1329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10606-108F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20pancreas%20cell%20line%3a1C3IKEI.CNhs11733.10606-108F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel embryonic pancreas cell line:1C3IKEI_CNhs11733_10606-108F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10606-108F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:1C3IKEI+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicPancreasCellLine1C3IKEI_CNhs11733_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10606-108F3\ urlLabel FANTOM5 Details:\ EmbryonicPancreasCellLine1C3IKEI_CNhs11733_tpm_fwd Cl:1C3IKEI+ bigWig embryonic pancreas cell line:1C3IKEI_CNhs11733_10606-108F3_forward 1 1329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10606-108F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20pancreas%20cell%20line%3a1C3IKEI.CNhs11733.10606-108F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel embryonic pancreas cell line:1C3IKEI_CNhs11733_10606-108F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10606-108F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:1C3IKEI+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicPancreasCellLine1C3IKEI_CNhs11733_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10606-108F3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1NrsfPcr2xRawRep2 PANC NRSF PCR2 2 bigWig 0.113983 698.262024 PANC-1 NRSF PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1329 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 NRSF PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PANC NRSF PCR2 2\ subGroups view=RawSignal factor=NRSF cellType=t3PANC1 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPanc1NrsfPcr2xRawRep2\ type bigWig 0.113983 698.262024\ EmbryonicPancreasCellLine1C3IKEI_CNhs11733_ctss_rev Cl:1C3IKEI- bigWig embryonic pancreas cell line:1C3IKEI_CNhs11733_10606-108F3_reverse 0 1330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10606-108F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20pancreas%20cell%20line%3a1C3IKEI.CNhs11733.10606-108F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel embryonic pancreas cell line:1C3IKEI_CNhs11733_10606-108F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10606-108F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:1C3IKEI-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicPancreasCellLine1C3IKEI_CNhs11733_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10606-108F3\ urlLabel FANTOM5 Details:\ EmbryonicPancreasCellLine1C3IKEI_CNhs11733_tpm_rev Cl:1C3IKEI- bigWig embryonic pancreas cell line:1C3IKEI_CNhs11733_10606-108F3_reverse 1 1330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10606-108F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20pancreas%20cell%20line%3a1C3IKEI.CNhs11733.10606-108F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel embryonic pancreas cell line:1C3IKEI_CNhs11733_10606-108F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10606-108F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:1C3IKEI-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicPancreasCellLine1C3IKEI_CNhs11733_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10606-108F3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1NrsfV0416101PkRep1 PANC NRSF V101 1 broadPeak PANC-1 NRSF v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1330 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 NRSF v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PANC NRSF V101 1\ subGroups view=Peaks factor=NRSF cellType=t3PANC1 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPanc1NrsfV0416101PkRep1\ type broadPeak\ EmbryonicPancreasCellLine2C6_CNhs11814_ctss_fwd Cl:2C6+ bigWig embryonic pancreas cell line:2C6_CNhs11814_10603-108E9_forward 0 1331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10603-108E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20pancreas%20cell%20line%3a2C6.CNhs11814.10603-108E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel embryonic pancreas cell line:2C6_CNhs11814_10603-108E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10603-108E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:2C6+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicPancreasCellLine2C6_CNhs11814_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10603-108E9\ urlLabel FANTOM5 Details:\ EmbryonicPancreasCellLine2C6_CNhs11814_tpm_fwd Cl:2C6+ bigWig embryonic pancreas cell line:2C6_CNhs11814_10603-108E9_forward 1 1331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10603-108E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20pancreas%20cell%20line%3a2C6.CNhs11814.10603-108E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel embryonic pancreas cell line:2C6_CNhs11814_10603-108E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10603-108E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:2C6+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicPancreasCellLine2C6_CNhs11814_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10603-108E9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1NrsfV0416101RawRep1 PANC NRSF V101 1 bigWig 0.799030 217.535995 PANC-1 NRSF v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1331 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 NRSF v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PANC NRSF V101 1\ subGroups view=RawSignal factor=NRSF cellType=t3PANC1 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPanc1NrsfV0416101RawRep1\ type bigWig 0.799030 217.535995\ EmbryonicPancreasCellLine2C6_CNhs11814_ctss_rev Cl:2C6- bigWig embryonic pancreas cell line:2C6_CNhs11814_10603-108E9_reverse 0 1332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10603-108E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20pancreas%20cell%20line%3a2C6.CNhs11814.10603-108E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel embryonic pancreas cell line:2C6_CNhs11814_10603-108E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10603-108E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:2C6-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicPancreasCellLine2C6_CNhs11814_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10603-108E9\ urlLabel FANTOM5 Details:\ EmbryonicPancreasCellLine2C6_CNhs11814_tpm_rev Cl:2C6- bigWig embryonic pancreas cell line:2C6_CNhs11814_10603-108E9_reverse 1 1332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10603-108E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20pancreas%20cell%20line%3a2C6.CNhs11814.10603-108E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel embryonic pancreas cell line:2C6_CNhs11814_10603-108E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10603-108E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:2C6-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicPancreasCellLine2C6_CNhs11814_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10603-108E9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1NrsfV0416101PkRep2 PANC NRSF V101 2 broadPeak PANC-1 NRSF v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1332 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 NRSF v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PANC NRSF V101 2\ subGroups view=Peaks factor=NRSF cellType=t3PANC1 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPanc1NrsfV0416101PkRep2\ type broadPeak\ TransitionalcellCarcinomaCellLine5637_CNhs10735_ctss_fwd Cl:5637+ bigWig transitional-cell carcinoma cell line:5637_CNhs10735_10418-106C4_forward 0 1333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10418-106C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/transitional-cell%20carcinoma%20cell%20line%3a5637.CNhs10735.10418-106C4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel transitional-cell carcinoma cell line:5637_CNhs10735_10418-106C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10418-106C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:5637+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TransitionalcellCarcinomaCellLine5637_CNhs10735_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10418-106C4\ urlLabel FANTOM5 Details:\ TransitionalcellCarcinomaCellLine5637_CNhs10735_tpm_fwd Cl:5637+ bigWig transitional-cell carcinoma cell line:5637_CNhs10735_10418-106C4_forward 1 1333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10418-106C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/transitional-cell%20carcinoma%20cell%20line%3a5637.CNhs10735.10418-106C4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel transitional-cell carcinoma cell line:5637_CNhs10735_10418-106C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10418-106C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:5637+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TransitionalcellCarcinomaCellLine5637_CNhs10735_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10418-106C4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1NrsfV0416101RawRep2 PANC NRSF V101 2 bigWig 0.552779 182.970001 PANC-1 NRSF v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1333 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 NRSF v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PANC NRSF V101 2\ subGroups view=RawSignal factor=NRSF cellType=t3PANC1 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPanc1NrsfV0416101RawRep2\ type bigWig 0.552779 182.970001\ TransitionalcellCarcinomaCellLine5637_CNhs10735_ctss_rev Cl:5637- bigWig transitional-cell carcinoma cell line:5637_CNhs10735_10418-106C4_reverse 0 1334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10418-106C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/transitional-cell%20carcinoma%20cell%20line%3a5637.CNhs10735.10418-106C4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel transitional-cell carcinoma cell line:5637_CNhs10735_10418-106C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10418-106C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:5637-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TransitionalcellCarcinomaCellLine5637_CNhs10735_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10418-106C4\ urlLabel FANTOM5 Details:\ TransitionalcellCarcinomaCellLine5637_CNhs10735_tpm_rev Cl:5637- bigWig transitional-cell carcinoma cell line:5637_CNhs10735_10418-106C4_reverse 1 1334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10418-106C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/transitional-cell%20carcinoma%20cell%20line%3a5637.CNhs10735.10418-106C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel transitional-cell carcinoma cell line:5637_CNhs10735_10418-106C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10418-106C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:5637-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TransitionalcellCarcinomaCellLine5637_CNhs10735_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10418-106C4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1NrsfV0422111PkRep1 PANC NRSF V11 1 broadPeak PANC-1 NRSF v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1334 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 NRSF v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PANC NRSF V11 1\ subGroups view=Peaks factor=NRSF cellType=t3PANC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPanc1NrsfV0422111PkRep1\ type broadPeak\ AnaplasticCarcinomaCellLine8305C_CNhs10745_ctss_fwd Cl:8305C+ bigWig anaplastic carcinoma cell line:8305C_CNhs10745_10428-106D5_forward 0 1335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10428-106D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/anaplastic%20carcinoma%20cell%20line%3a8305C.CNhs10745.10428-106D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel anaplastic carcinoma cell line:8305C_CNhs10745_10428-106D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10428-106D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:8305C+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AnaplasticCarcinomaCellLine8305C_CNhs10745_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10428-106D5\ urlLabel FANTOM5 Details:\ AnaplasticCarcinomaCellLine8305C_CNhs10745_tpm_fwd Cl:8305C+ bigWig anaplastic carcinoma cell line:8305C_CNhs10745_10428-106D5_forward 1 1335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10428-106D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/anaplastic%20carcinoma%20cell%20line%3a8305C.CNhs10745.10428-106D5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel anaplastic carcinoma cell line:8305C_CNhs10745_10428-106D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10428-106D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:8305C+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AnaplasticCarcinomaCellLine8305C_CNhs10745_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10428-106D5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1NrsfV0422111RawRep1 PANC NRSF V11 1 bigWig 1.000000 3458.000000 PANC-1 NRSF v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1335 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 NRSF v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PANC NRSF V11 1\ subGroups view=RawSignal factor=NRSF cellType=t3PANC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPanc1NrsfV0422111RawRep1\ type bigWig 1.000000 3458.000000\ AnaplasticCarcinomaCellLine8305C_CNhs10745_ctss_rev Cl:8305C- bigWig anaplastic carcinoma cell line:8305C_CNhs10745_10428-106D5_reverse 0 1336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10428-106D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/anaplastic%20carcinoma%20cell%20line%3a8305C.CNhs10745.10428-106D5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel anaplastic carcinoma cell line:8305C_CNhs10745_10428-106D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10428-106D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:8305C-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AnaplasticCarcinomaCellLine8305C_CNhs10745_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10428-106D5\ urlLabel FANTOM5 Details:\ AnaplasticCarcinomaCellLine8305C_CNhs10745_tpm_rev Cl:8305C- bigWig anaplastic carcinoma cell line:8305C_CNhs10745_10428-106D5_reverse 1 1336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10428-106D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/anaplastic%20carcinoma%20cell%20line%3a8305C.CNhs10745.10428-106D5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel anaplastic carcinoma cell line:8305C_CNhs10745_10428-106D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10428-106D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:8305C-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AnaplasticCarcinomaCellLine8305C_CNhs10745_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10428-106D5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1NrsfV0422111PkRep2 PANC NRSF V11 2 broadPeak PANC-1 NRSF v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1336 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 NRSF v042211.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PANC NRSF V11 2\ subGroups view=Peaks factor=NRSF cellType=t3PANC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPanc1NrsfV0422111PkRep2\ type broadPeak\ PapillaryAdenocarcinomaCellLine8505C_CNhs11716_ctss_fwd Cl:8505C+ bigWig papillary adenocarcinoma cell line:8505C_CNhs11716_10437-106E5_forward 0 1337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10437-106E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/papillary%20adenocarcinoma%20cell%20line%3a8505C.CNhs11716.10437-106E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel papillary adenocarcinoma cell line:8505C_CNhs11716_10437-106E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10437-106E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:8505C+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PapillaryAdenocarcinomaCellLine8505C_CNhs11716_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10437-106E5\ urlLabel FANTOM5 Details:\ PapillaryAdenocarcinomaCellLine8505C_CNhs11716_tpm_fwd Cl:8505C+ bigWig papillary adenocarcinoma cell line:8505C_CNhs11716_10437-106E5_forward 1 1337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10437-106E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/papillary%20adenocarcinoma%20cell%20line%3a8505C.CNhs11716.10437-106E5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel papillary adenocarcinoma cell line:8505C_CNhs11716_10437-106E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10437-106E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:8505C+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PapillaryAdenocarcinomaCellLine8505C_CNhs11716_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10437-106E5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1NrsfV0422111RawRep2 PANC NRSF V11 2 bigWig 1.000000 6839.000000 PANC-1 NRSF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1337 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 NRSF v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PANC NRSF V11 2\ subGroups view=RawSignal factor=NRSF cellType=t3PANC1 protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPanc1NrsfV0422111RawRep2\ type bigWig 1.000000 6839.000000\ PapillaryAdenocarcinomaCellLine8505C_CNhs11716_ctss_rev Cl:8505C- bigWig papillary adenocarcinoma cell line:8505C_CNhs11716_10437-106E5_reverse 0 1338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10437-106E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/papillary%20adenocarcinoma%20cell%20line%3a8505C.CNhs11716.10437-106E5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel papillary adenocarcinoma cell line:8505C_CNhs11716_10437-106E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10437-106E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:8505C-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PapillaryAdenocarcinomaCellLine8505C_CNhs11716_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10437-106E5\ urlLabel FANTOM5 Details:\ PapillaryAdenocarcinomaCellLine8505C_CNhs11716_tpm_rev Cl:8505C- bigWig papillary adenocarcinoma cell line:8505C_CNhs11716_10437-106E5_reverse 1 1338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10437-106E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/papillary%20adenocarcinoma%20cell%20line%3a8505C.CNhs11716.10437-106E5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel papillary adenocarcinoma cell line:8505C_CNhs11716_10437-106E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10437-106E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:8505C-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PapillaryAdenocarcinomaCellLine8505C_CNhs11716_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10437-106E5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1Pol24h8V0416101PkRep1 PANC Pol2-4H8 V101 1 broadPeak PANC-1 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1338 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PANC Pol2-4H8 V101 1\ subGroups view=Peaks factor=POL24H8 cellType=t3PANC1 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPanc1Pol24h8V0416101PkRep1\ type broadPeak\ GlioblastomaCellLineA172_CNhs11185_ctss_fwd Cl:A172+ bigWig glioblastoma cell line:A172_CNhs11185_10444-106F3_forward 0 1339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/glioblastoma%20cell%20line%3aA172.CNhs11185.10444-106F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel glioblastoma cell line:A172_CNhs11185_10444-106F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10444-106F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:A172+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GlioblastomaCellLineA172_CNhs11185_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3\ urlLabel FANTOM5 Details:\ GlioblastomaCellLineA172_CNhs11185_tpm_fwd Cl:A172+ bigWig glioblastoma cell line:A172_CNhs11185_10444-106F3_forward 1 1339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/glioblastoma%20cell%20line%3aA172.CNhs11185.10444-106F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel glioblastoma cell line:A172_CNhs11185_10444-106F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10444-106F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:A172+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GlioblastomaCellLineA172_CNhs11185_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1Pol24h8V0416101RawRep1 PANC Pol2-4H8 V101 1 bigWig 0.197972 109.279999 PANC-1 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1339 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PANC Pol2-4H8 V101 1\ subGroups view=RawSignal factor=POL24H8 cellType=t3PANC1 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPanc1Pol24h8V0416101RawRep1\ type bigWig 0.197972 109.279999\ GlioblastomaCellLineA172_CNhs11185_ctss_rev Cl:A172- bigWig glioblastoma cell line:A172_CNhs11185_10444-106F3_reverse 0 1340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/glioblastoma%20cell%20line%3aA172.CNhs11185.10444-106F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel glioblastoma cell line:A172_CNhs11185_10444-106F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10444-106F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:A172-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GlioblastomaCellLineA172_CNhs11185_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3\ urlLabel FANTOM5 Details:\ GlioblastomaCellLineA172_CNhs11185_tpm_rev Cl:A172- bigWig glioblastoma cell line:A172_CNhs11185_10444-106F3_reverse 1 1340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/glioblastoma%20cell%20line%3aA172.CNhs11185.10444-106F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel glioblastoma cell line:A172_CNhs11185_10444-106F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10444-106F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:A172-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GlioblastomaCellLineA172_CNhs11185_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1Pol24h8V0416101PkRep2 PANC Pol2-4H8 V101 2 broadPeak PANC-1 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1340 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PANC Pol2-4H8 V101 2\ subGroups view=Peaks factor=POL24H8 cellType=t3PANC1 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPanc1Pol24h8V0416101PkRep2\ type broadPeak\ GlioblastomaCellLineA172TechRep2_CNhs11248_ctss_fwd Cl:A172Tr2+ bigWig glioblastoma cell line:A172, tech_rep2_CNhs11248_10444-106F3_forward 0 1341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/glioblastoma%20cell%20line%3aA172%2c%20tech_rep2.CNhs11248.10444-106F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel glioblastoma cell line:A172, tech_rep2_CNhs11248_10444-106F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10444-106F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:A172Tr2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GlioblastomaCellLineA172TechRep2_CNhs11248_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3\ urlLabel FANTOM5 Details:\ GlioblastomaCellLineA172TechRep2_CNhs11248_tpm_fwd Cl:A172Tr2+ bigWig glioblastoma cell line:A172, tech_rep2_CNhs11248_10444-106F3_forward 1 1341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/glioblastoma%20cell%20line%3aA172%2c%20tech_rep2.CNhs11248.10444-106F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel glioblastoma cell line:A172, tech_rep2_CNhs11248_10444-106F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10444-106F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:A172Tr2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GlioblastomaCellLineA172TechRep2_CNhs11248_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1Pol24h8V0416101RawRep2 PANC Pol2-4H8 V101 2 bigWig 0.106907 171.184006 PANC-1 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1341 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PANC Pol2-4H8 V101 2\ subGroups view=RawSignal factor=POL24H8 cellType=t3PANC1 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPanc1Pol24h8V0416101RawRep2\ type bigWig 0.106907 171.184006\ GlioblastomaCellLineA172TechRep2_CNhs11248_ctss_rev Cl:A172Tr2- bigWig glioblastoma cell line:A172, tech_rep2_CNhs11248_10444-106F3_reverse 0 1342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/glioblastoma%20cell%20line%3aA172%2c%20tech_rep2.CNhs11248.10444-106F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel glioblastoma cell line:A172, tech_rep2_CNhs11248_10444-106F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10444-106F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:A172Tr2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GlioblastomaCellLineA172TechRep2_CNhs11248_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3\ urlLabel FANTOM5 Details:\ GlioblastomaCellLineA172TechRep2_CNhs11248_tpm_rev Cl:A172Tr2- bigWig glioblastoma cell line:A172, tech_rep2_CNhs11248_10444-106F3_reverse 1 1342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/glioblastoma%20cell%20line%3aA172%2c%20tech_rep2.CNhs11248.10444-106F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel glioblastoma cell line:A172, tech_rep2_CNhs11248_10444-106F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10444-106F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:A172Tr2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GlioblastomaCellLineA172TechRep2_CNhs11248_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1Sin3ak20V0416101PkRep1 PANC Sin3A V101 1 broadPeak PANC-1 Sin3Ak-20 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1342 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 Sin3Ak-20 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PANC Sin3A V101 1\ subGroups view=Peaks factor=SIN3AK20 cellType=t3PANC1 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPanc1Sin3ak20V0416101PkRep1\ type broadPeak\ EpidermoidCarcinomaCellLineA431_CNhs10743_ctss_fwd Cl:A431+ bigWig epidermoid carcinoma cell line:A431_CNhs10743_10426-106D3_forward 0 1343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10426-106D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epidermoid%20carcinoma%20cell%20line%3aA431.CNhs10743.10426-106D3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel epidermoid carcinoma cell line:A431_CNhs10743_10426-106D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10426-106D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:A431+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpidermoidCarcinomaCellLineA431_CNhs10743_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10426-106D3\ urlLabel FANTOM5 Details:\ EpidermoidCarcinomaCellLineA431_CNhs10743_tpm_fwd Cl:A431+ bigWig epidermoid carcinoma cell line:A431_CNhs10743_10426-106D3_forward 1 1343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10426-106D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epidermoid%20carcinoma%20cell%20line%3aA431.CNhs10743.10426-106D3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel epidermoid carcinoma cell line:A431_CNhs10743_10426-106D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10426-106D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:A431+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpidermoidCarcinomaCellLineA431_CNhs10743_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10426-106D3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1Sin3ak20V0416101RawRep1 PANC Sin3A V101 1 bigWig 0.380534 1574.359985 PANC-1 Sin3Ak-20 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1343 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 Sin3Ak-20 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PANC Sin3A V101 1\ subGroups view=RawSignal factor=SIN3AK20 cellType=t3PANC1 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPanc1Sin3ak20V0416101RawRep1\ type bigWig 0.380534 1574.359985\ EpidermoidCarcinomaCellLineA431_CNhs10743_ctss_rev Cl:A431- bigWig epidermoid carcinoma cell line:A431_CNhs10743_10426-106D3_reverse 0 1344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10426-106D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epidermoid%20carcinoma%20cell%20line%3aA431.CNhs10743.10426-106D3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel epidermoid carcinoma cell line:A431_CNhs10743_10426-106D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10426-106D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:A431-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpidermoidCarcinomaCellLineA431_CNhs10743_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10426-106D3\ urlLabel FANTOM5 Details:\ EpidermoidCarcinomaCellLineA431_CNhs10743_tpm_rev Cl:A431- bigWig epidermoid carcinoma cell line:A431_CNhs10743_10426-106D3_reverse 1 1344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10426-106D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epidermoid%20carcinoma%20cell%20line%3aA431.CNhs10743.10426-106D3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel epidermoid carcinoma cell line:A431_CNhs10743_10426-106D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10426-106D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:A431-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpidermoidCarcinomaCellLineA431_CNhs10743_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10426-106D3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1Sin3ak20V0416101PkRep2 PANC Sin3A V101 2 broadPeak PANC-1 Sin3Ak-20 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1344 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PANC-1 Sin3Ak-20 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PANC Sin3A V101 2\ subGroups view=Peaks factor=SIN3AK20 cellType=t3PANC1 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPanc1Sin3ak20V0416101PkRep2\ type broadPeak\ LungAdenocarcinomaCellLineA549_CNhs11275_ctss_fwd Cl:A549+ bigWig lung adenocarcinoma cell line:A549_CNhs11275_10499-107C4_forward 0 1345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10499-107C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%20adenocarcinoma%20cell%20line%3aA549.CNhs11275.10499-107C4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel lung adenocarcinoma cell line:A549_CNhs11275_10499-107C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10499-107C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:A549+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LungAdenocarcinomaCellLineA549_CNhs11275_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10499-107C4\ urlLabel FANTOM5 Details:\ LungAdenocarcinomaCellLineA549_CNhs11275_tpm_fwd Cl:A549+ bigWig lung adenocarcinoma cell line:A549_CNhs11275_10499-107C4_forward 1 1345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10499-107C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%20adenocarcinoma%20cell%20line%3aA549.CNhs11275.10499-107C4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel lung adenocarcinoma cell line:A549_CNhs11275_10499-107C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10499-107C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:A549+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LungAdenocarcinomaCellLineA549_CNhs11275_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10499-107C4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1Sin3ak20V0416101RawRep2 PANC Sin3A V101 2 bigWig 0.173385 357.173004 PANC-1 Sin3Ak-20 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1345 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 Sin3Ak-20 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PANC Sin3A V101 2\ subGroups view=RawSignal factor=SIN3AK20 cellType=t3PANC1 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPanc1Sin3ak20V0416101RawRep2\ type bigWig 0.173385 357.173004\ LungAdenocarcinomaCellLineA549_CNhs11275_ctss_rev Cl:A549- bigWig lung adenocarcinoma cell line:A549_CNhs11275_10499-107C4_reverse 0 1346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10499-107C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%20adenocarcinoma%20cell%20line%3aA549.CNhs11275.10499-107C4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel lung adenocarcinoma cell line:A549_CNhs11275_10499-107C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10499-107C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:A549-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LungAdenocarcinomaCellLineA549_CNhs11275_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10499-107C4\ urlLabel FANTOM5 Details:\ LungAdenocarcinomaCellLineA549_CNhs11275_tpm_rev Cl:A549- bigWig lung adenocarcinoma cell line:A549_CNhs11275_10499-107C4_reverse 1 1346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10499-107C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%20adenocarcinoma%20cell%20line%3aA549.CNhs11275.10499-107C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel lung adenocarcinoma cell line:A549_CNhs11275_10499-107C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10499-107C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:A549-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LungAdenocarcinomaCellLineA549_CNhs11275_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10499-107C4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1RxlchPcr2xRawRep1 PANC RvXL PCR2 1 bigWig 0.268720 169.091995 PANC-1 Control PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1346 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 Control PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PANC RvXL PCR2 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3PANC1 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPanc1RxlchPcr2xRawRep1\ type bigWig 0.268720 169.091995\ MesotheliomaCellLineACCMESO1_CNhs11263_ctss_fwd Cl:ACC-MESO-1+ bigWig mesothelioma cell line:ACC-MESO-1_CNhs11263_10493-107B7_forward 0 1347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10493-107B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesothelioma%20cell%20line%3aACC-MESO-1.CNhs11263.10493-107B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:ACC-MESO-1_CNhs11263_10493-107B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10493-107B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ACC-MESO-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineACCMESO1_CNhs11263_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10493-107B7\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineACCMESO1_CNhs11263_tpm_fwd Cl:ACC-MESO-1+ bigWig mesothelioma cell line:ACC-MESO-1_CNhs11263_10493-107B7_forward 1 1347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10493-107B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesothelioma%20cell%20line%3aACC-MESO-1.CNhs11263.10493-107B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:ACC-MESO-1_CNhs11263_10493-107B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10493-107B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ACC-MESO-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineACCMESO1_CNhs11263_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10493-107B7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1RxlchPcr2xRawRep2 PANC RvXL PCR2 2 bigWig 0.096728 549.244995 PANC-1 Control PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1347 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 Control PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PANC RvXL PCR2 2\ subGroups view=RawSignal factor=zRXLCH cellType=t3PANC1 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPanc1RxlchPcr2xRawRep2\ type bigWig 0.096728 549.244995\ MesotheliomaCellLineACCMESO1_CNhs11263_ctss_rev Cl:ACC-MESO-1- bigWig mesothelioma cell line:ACC-MESO-1_CNhs11263_10493-107B7_reverse 0 1348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10493-107B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesothelioma%20cell%20line%3aACC-MESO-1.CNhs11263.10493-107B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:ACC-MESO-1_CNhs11263_10493-107B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10493-107B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ACC-MESO-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineACCMESO1_CNhs11263_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10493-107B7\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineACCMESO1_CNhs11263_tpm_rev Cl:ACC-MESO-1- bigWig mesothelioma cell line:ACC-MESO-1_CNhs11263_10493-107B7_reverse 1 1348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10493-107B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesothelioma%20cell%20line%3aACC-MESO-1.CNhs11263.10493-107B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:ACC-MESO-1_CNhs11263_10493-107B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10493-107B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ACC-MESO-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineACCMESO1_CNhs11263_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10493-107B7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1RxlchV0416101RawRep1 PANC RvXL V101 1 bigWig 0.066014 232.074005 PANC-1 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1348 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PANC RvXL V101 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3PANC1 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPanc1RxlchV0416101RawRep1\ type bigWig 0.066014 232.074005\ MesotheliomaCellLineACCMESO4_CNhs11264_ctss_fwd Cl:ACC-MESO-4+ bigWig mesothelioma cell line:ACC-MESO-4_CNhs11264_10494-107B8_forward 0 1349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10494-107B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesothelioma%20cell%20line%3aACC-MESO-4.CNhs11264.10494-107B8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:ACC-MESO-4_CNhs11264_10494-107B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10494-107B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ACC-MESO-4+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineACCMESO4_CNhs11264_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10494-107B8\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineACCMESO4_CNhs11264_tpm_fwd Cl:ACC-MESO-4+ bigWig mesothelioma cell line:ACC-MESO-4_CNhs11264_10494-107B8_forward 1 1349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10494-107B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesothelioma%20cell%20line%3aACC-MESO-4.CNhs11264.10494-107B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:ACC-MESO-4_CNhs11264_10494-107B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10494-107B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ACC-MESO-4+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineACCMESO4_CNhs11264_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10494-107B8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1RxlchV0416101RawRep2 PANC RvXL V101 2 bigWig 0.085486 268.854004 PANC-1 Control v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1349 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 Control v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PANC RvXL V101 2\ subGroups view=RawSignal factor=zRXLCH cellType=t3PANC1 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPanc1RxlchV0416101RawRep2\ type bigWig 0.085486 268.854004\ MesotheliomaCellLineACCMESO4_CNhs11264_ctss_rev Cl:ACC-MESO-4- bigWig mesothelioma cell line:ACC-MESO-4_CNhs11264_10494-107B8_reverse 0 1350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10494-107B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesothelioma%20cell%20line%3aACC-MESO-4.CNhs11264.10494-107B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:ACC-MESO-4_CNhs11264_10494-107B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10494-107B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ACC-MESO-4-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineACCMESO4_CNhs11264_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10494-107B8\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineACCMESO4_CNhs11264_tpm_rev Cl:ACC-MESO-4- bigWig mesothelioma cell line:ACC-MESO-4_CNhs11264_10494-107B8_reverse 1 1350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10494-107B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesothelioma%20cell%20line%3aACC-MESO-4.CNhs11264.10494-107B8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:ACC-MESO-4_CNhs11264_10494-107B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10494-107B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ACC-MESO-4-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineACCMESO4_CNhs11264_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10494-107B8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPanc1RxlchV0422111RawRep1 PANC RvXL V11 1 bigWig 1.000000 4225.000000 PANC-1 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1350 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PANC-1 Control v042211.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PANC RvXL V11 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3PANC1 protocol=V0422111 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPanc1RxlchV0422111RawRep1\ type bigWig 1.000000 4225.000000\ PlasmaCellLeukemiaCellLineARH77_CNhs12807_ctss_fwd Cl:ARH-77+ bigWig plasma cell leukemia cell line:ARH-77_CNhs12807_10840-111E3_forward 0 1351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10840-111E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/plasma%20cell%20leukemia%20cell%20line%3aARH-77.CNhs12807.10840-111E3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel plasma cell leukemia cell line:ARH-77_CNhs12807_10840-111E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10840-111E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ARH-77+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PlasmaCellLeukemiaCellLineARH77_CNhs12807_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10840-111E3\ urlLabel FANTOM5 Details:\ PlasmaCellLeukemiaCellLineARH77_CNhs12807_tpm_fwd Cl:ARH-77+ bigWig plasma cell leukemia cell line:ARH-77_CNhs12807_10840-111E3_forward 1 1351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10840-111E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/plasma%20cell%20leukemia%20cell%20line%3aARH-77.CNhs12807.10840-111E3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel plasma cell leukemia cell line:ARH-77_CNhs12807_10840-111E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10840-111E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ARH-77+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PlasmaCellLeukemiaCellLineARH77_CNhs12807_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10840-111E3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1Foxp2Pcr2xPkRep1 PFSK FOXP2 PCR2 1 broadPeak PFSK-1 FOXP2 PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1351 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PFSK-1 FOXP2 PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PFSK FOXP2 PCR2 1\ subGroups view=Peaks factor=FOXP2 cellType=t3PFSK1 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPfsk1Foxp2Pcr2xPkRep1\ type broadPeak\ PlasmaCellLeukemiaCellLineARH77_CNhs12807_ctss_rev Cl:ARH-77- bigWig plasma cell leukemia cell line:ARH-77_CNhs12807_10840-111E3_reverse 0 1352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10840-111E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/plasma%20cell%20leukemia%20cell%20line%3aARH-77.CNhs12807.10840-111E3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel plasma cell leukemia cell line:ARH-77_CNhs12807_10840-111E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10840-111E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ARH-77-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PlasmaCellLeukemiaCellLineARH77_CNhs12807_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10840-111E3\ urlLabel FANTOM5 Details:\ PlasmaCellLeukemiaCellLineARH77_CNhs12807_tpm_rev Cl:ARH-77- bigWig plasma cell leukemia cell line:ARH-77_CNhs12807_10840-111E3_reverse 1 1352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10840-111E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/plasma%20cell%20leukemia%20cell%20line%3aARH-77.CNhs12807.10840-111E3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel plasma cell leukemia cell line:ARH-77_CNhs12807_10840-111E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10840-111E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ARH-77-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PlasmaCellLeukemiaCellLineARH77_CNhs12807_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10840-111E3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1Foxp2Pcr2xRawRep1 PFSK FOXP2 PCR2 1 bigWig 0.401856 89.714302 PFSK-1 FOXP2 PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1352 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PFSK-1 FOXP2 PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PFSK FOXP2 PCR2 1\ subGroups view=RawSignal factor=FOXP2 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0 0 0 regulation 0 longLabel PFSK-1 NRSF PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PFSK NRSF PCR2 1\ subGroups view=RawSignal factor=NRSF cellType=t3PFSK1 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPfsk1NrsfPcr2xRawRep1\ type bigWig 0.249477 401.970001\ AcuteLymphoblasticLeukemiaBALLCellLineBALL1_CNhs11251_ctss_fwd Cl:BALL-1+ bigWig acute lymphoblastic leukemia (B-ALL) cell line:BALL-1_CNhs11251_10455-106G5_forward 0 1357 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10455-106G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20lymphoblastic%20leukemia%20%28B-ALL%29%20cell%20line%3aBALL-1.CNhs11251.10455-106G5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel acute lymphoblastic leukemia (B-ALL) cell line:BALL-1_CNhs11251_10455-106G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10455-106G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:BALL-1+\ subGroups 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bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10455-106G5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1NrsfPcr2xPkRep2 PFSK NRSF PCR2 2 broadPeak PFSK-1 NRSF PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1357 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PFSK-1 NRSF PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PFSK NRSF PCR2 2\ subGroups view=Peaks factor=NRSF cellType=t3PFSK1 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPfsk1NrsfPcr2xPkRep2\ type broadPeak\ AcuteLymphoblasticLeukemiaBALLCellLineBALL1_CNhs11251_ctss_rev Cl:BALL-1- bigWig acute lymphoblastic leukemia (B-ALL) cell line:BALL-1_CNhs11251_10455-106G5_reverse 0 1358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10455-106G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20lymphoblastic%20leukemia%20%28B-ALL%29%20cell%20line%3aBALL-1.CNhs11251.10455-106G5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel acute lymphoblastic leukemia (B-ALL) 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0 http://fantom.gsc.riken.jp/5/sstar/FF:10423-106C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/choriocarcinoma%20cell%20line%3aBeWo.CNhs10740.10423-106C9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel choriocarcinoma cell line:BeWo_CNhs10740_10423-106C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10423-106C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:BeWo-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChoriocarcinomaCellLineBeWo_CNhs10740_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10423-106C9\ urlLabel FANTOM5 Details:\ ChoriocarcinomaCellLineBeWo_CNhs10740_tpm_rev Cl:BeWo- bigWig choriocarcinoma cell line:BeWo_CNhs10740_10423-106C9_reverse 1 1360 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10423-106C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/choriocarcinoma%20cell%20line%3aBeWo.CNhs10740.10423-106C9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel choriocarcinoma cell line:BeWo_CNhs10740_10423-106C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10423-106C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:BeWo-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChoriocarcinomaCellLineBeWo_CNhs10740_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10423-106C9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1NrsfV0416101RawRep1 PFSK NRSF V101 1 bigWig 0.168346 221.332001 PFSK-1 NRSF v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1360 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PFSK-1 NRSF v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PFSK NRSF V101 1\ subGroups view=RawSignal factor=NRSF cellType=t3PFSK1 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPfsk1NrsfV0416101RawRep1\ type bigWig 0.168346 221.332001\ OralSquamousCellCarcinomaCellLineCa922_CNhs10752_ctss_fwd Cl:Ca9-22+ bigWig oral squamous cell carcinoma cell line:Ca9-22_CNhs10752_10434-106E2_forward 0 1361 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10434-106E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aCa9-22.CNhs10752.10434-106E2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel oral squamous cell carcinoma cell line:Ca9-22_CNhs10752_10434-106E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10434-106E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Ca9-22+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OralSquamousCellCarcinomaCellLineCa922_CNhs10752_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10434-106E2\ urlLabel FANTOM5 Details:\ OralSquamousCellCarcinomaCellLineCa922_CNhs10752_tpm_fwd Cl:Ca9-22+ bigWig oral squamous cell carcinoma cell line:Ca9-22_CNhs10752_10434-106E2_forward 1 1361 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10434-106E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aCa9-22.CNhs10752.10434-106E2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel oral squamous cell carcinoma cell line:Ca9-22_CNhs10752_10434-106E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10434-106E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Ca9-22+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OralSquamousCellCarcinomaCellLineCa922_CNhs10752_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10434-106E2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1NrsfV0416101PkRep2 PFSK NRSF V101 2 broadPeak PFSK-1 NRSF v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1361 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PFSK-1 NRSF v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PFSK NRSF V101 2\ subGroups view=Peaks factor=NRSF cellType=t3PFSK1 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPfsk1NrsfV0416101PkRep2\ type broadPeak\ OralSquamousCellCarcinomaCellLineCa922_CNhs10752_ctss_rev Cl:Ca9-22- bigWig oral squamous cell carcinoma cell line:Ca9-22_CNhs10752_10434-106E2_reverse 0 1362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10434-106E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aCa9-22.CNhs10752.10434-106E2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel oral squamous cell carcinoma cell line:Ca9-22_CNhs10752_10434-106E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10434-106E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Ca9-22-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OralSquamousCellCarcinomaCellLineCa922_CNhs10752_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10434-106E2\ urlLabel FANTOM5 Details:\ OralSquamousCellCarcinomaCellLineCa922_CNhs10752_tpm_rev Cl:Ca9-22- bigWig oral squamous cell carcinoma cell line:Ca9-22_CNhs10752_10434-106E2_reverse 1 1362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10434-106E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aCa9-22.CNhs10752.10434-106E2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel oral squamous cell carcinoma cell line:Ca9-22_CNhs10752_10434-106E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10434-106E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Ca9-22-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OralSquamousCellCarcinomaCellLineCa922_CNhs10752_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10434-106E2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1NrsfV0416101RawRep2 PFSK NRSF V101 2 bigWig 0.228892 412.463013 PFSK-1 NRSF v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1362 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PFSK-1 NRSF v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PFSK NRSF V101 2\ subGroups view=RawSignal factor=NRSF cellType=t3PFSK1 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPfsk1NrsfV0416101RawRep2\ type bigWig 0.228892 412.463013\ ColonCarcinomaCellLineCACO2_CNhs11280_ctss_fwd Cl:CACO-2+ bigWig colon carcinoma cell line:CACO-2_CNhs11280_10513-107D9_forward 0 1363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10513-107D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%20carcinoma%20cell%20line%3aCACO-2.CNhs11280.10513-107D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel colon carcinoma cell line:CACO-2_CNhs11280_10513-107D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10513-107D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CACO-2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ColonCarcinomaCellLineCACO2_CNhs11280_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10513-107D9\ urlLabel FANTOM5 Details:\ ColonCarcinomaCellLineCACO2_CNhs11280_tpm_fwd Cl:CACO-2+ bigWig colon carcinoma cell line:CACO-2_CNhs11280_10513-107D9_forward 1 1363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10513-107D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%20carcinoma%20cell%20line%3aCACO-2.CNhs11280.10513-107D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel colon carcinoma cell line:CACO-2_CNhs11280_10513-107D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10513-107D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CACO-2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ColonCarcinomaCellLineCACO2_CNhs11280_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10513-107D9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1Pol24h8V0416101PkRep1 PFSK Pol2-4H8 V101 1 broadPeak PFSK-1 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1363 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PFSK-1 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PFSK Pol2-4H8 V101 1\ subGroups view=Peaks factor=POL24H8 cellType=t3PFSK1 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPfsk1Pol24h8V0416101PkRep1\ type broadPeak\ ColonCarcinomaCellLineCACO2_CNhs11280_ctss_rev Cl:CACO-2- bigWig colon carcinoma cell line:CACO-2_CNhs11280_10513-107D9_reverse 0 1364 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10513-107D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%20carcinoma%20cell%20line%3aCACO-2.CNhs11280.10513-107D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel colon carcinoma cell line:CACO-2_CNhs11280_10513-107D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10513-107D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CACO-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ColonCarcinomaCellLineCACO2_CNhs11280_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10513-107D9\ urlLabel FANTOM5 Details:\ ColonCarcinomaCellLineCACO2_CNhs11280_tpm_rev Cl:CACO-2- bigWig colon carcinoma cell line:CACO-2_CNhs11280_10513-107D9_reverse 1 1364 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10513-107D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%20carcinoma%20cell%20line%3aCACO-2.CNhs11280.10513-107D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel colon carcinoma cell line:CACO-2_CNhs11280_10513-107D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10513-107D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CACO-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ColonCarcinomaCellLineCACO2_CNhs11280_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10513-107D9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1Pol24h8V0416101RawRep1 PFSK Pol2-4H8 V101 1 bigWig 0.159681 201.518005 PFSK-1 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1364 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PFSK-1 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PFSK Pol2-4H8 V101 1\ subGroups view=RawSignal factor=POL24H8 cellType=t3PFSK1 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPfsk1Pol24h8V0416101RawRep1\ type bigWig 0.159681 201.518005\ EpidermoidCarcinomaCellLineCaSki_CNhs10748_ctss_fwd Cl:CaSki+ bigWig epidermoid carcinoma cell line:Ca Ski_CNhs10748_10431-106D8_forward 0 1365 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10431-106D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epidermoid%20carcinoma%20cell%20line%3aCa%20Ski.CNhs10748.10431-106D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel epidermoid carcinoma cell line:Ca Ski_CNhs10748_10431-106D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10431-106D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CaSki+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpidermoidCarcinomaCellLineCaSki_CNhs10748_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10431-106D8\ urlLabel FANTOM5 Details:\ EpidermoidCarcinomaCellLineCaSki_CNhs10748_tpm_fwd Cl:CaSki+ bigWig epidermoid carcinoma cell line:Ca Ski_CNhs10748_10431-106D8_forward 1 1365 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10431-106D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epidermoid%20carcinoma%20cell%20line%3aCa%20Ski.CNhs10748.10431-106D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel epidermoid carcinoma cell line:Ca Ski_CNhs10748_10431-106D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10431-106D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CaSki+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpidermoidCarcinomaCellLineCaSki_CNhs10748_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10431-106D8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1Pol24h8V0416101PkRep2 PFSK Pol2-4H8 V101 2 broadPeak PFSK-1 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1365 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PFSK-1 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PFSK Pol2-4H8 V101 2\ subGroups view=Peaks factor=POL24H8 cellType=t3PFSK1 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPfsk1Pol24h8V0416101PkRep2\ type broadPeak\ EpidermoidCarcinomaCellLineCaSki_CNhs10748_ctss_rev Cl:CaSki- bigWig epidermoid carcinoma cell line:Ca Ski_CNhs10748_10431-106D8_reverse 0 1366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10431-106D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epidermoid%20carcinoma%20cell%20line%3aCa%20Ski.CNhs10748.10431-106D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel epidermoid carcinoma cell line:Ca Ski_CNhs10748_10431-106D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10431-106D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CaSki-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpidermoidCarcinomaCellLineCaSki_CNhs10748_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10431-106D8\ urlLabel FANTOM5 Details:\ EpidermoidCarcinomaCellLineCaSki_CNhs10748_tpm_rev Cl:CaSki- bigWig epidermoid carcinoma cell line:Ca Ski_CNhs10748_10431-106D8_reverse 1 1366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10431-106D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epidermoid%20carcinoma%20cell%20line%3aCa%20Ski.CNhs10748.10431-106D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel epidermoid carcinoma cell line:Ca Ski_CNhs10748_10431-106D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10431-106D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CaSki-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpidermoidCarcinomaCellLineCaSki_CNhs10748_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10431-106D8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1Pol24h8V0416101RawRep2 PFSK Pol2-4H8 V101 2 bigWig 0.182412 224.822006 PFSK-1 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1366 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PFSK-1 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PFSK Pol2-4H8 V101 2\ subGroups view=RawSignal factor=POL24H8 cellType=t3PFSK1 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPfsk1Pol24h8V0416101RawRep2\ type bigWig 0.182412 224.822006\ BronchogenicCarcinomaCellLineChaGoK1_CNhs11841_ctss_fwd Cl:ChaGo-K-1+ bigWig bronchogenic carcinoma cell line:ChaGo-K-1_CNhs11841_10710-109H8_forward 0 1367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10710-109H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/bronchogenic%20carcinoma%20cell%20line%3aChaGo-K-1.CNhs11841.10710-109H8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel bronchogenic carcinoma cell line:ChaGo-K-1_CNhs11841_10710-109H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10710-109H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ChaGo-K-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BronchogenicCarcinomaCellLineChaGoK1_CNhs11841_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10710-109H8\ urlLabel FANTOM5 Details:\ BronchogenicCarcinomaCellLineChaGoK1_CNhs11841_tpm_fwd Cl:ChaGo-K-1+ bigWig bronchogenic carcinoma cell line:ChaGo-K-1_CNhs11841_10710-109H8_forward 1 1367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10710-109H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/bronchogenic%20carcinoma%20cell%20line%3aChaGo-K-1.CNhs11841.10710-109H8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel bronchogenic carcinoma cell line:ChaGo-K-1_CNhs11841_10710-109H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10710-109H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ChaGo-K-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BronchogenicCarcinomaCellLineChaGoK1_CNhs11841_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10710-109H8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1Sin3ak20V0416101PkRep1 PFSK Sin3A V101 1 broadPeak PFSK-1 Sin3Ak-20 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1367 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PFSK-1 Sin3Ak-20 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PFSK Sin3A V101 1\ subGroups view=Peaks factor=SIN3AK20 cellType=t3PFSK1 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPfsk1Sin3ak20V0416101PkRep1\ type broadPeak\ BronchogenicCarcinomaCellLineChaGoK1_CNhs11841_ctss_rev Cl:ChaGo-K-1- bigWig bronchogenic carcinoma cell line:ChaGo-K-1_CNhs11841_10710-109H8_reverse 0 1368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10710-109H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/bronchogenic%20carcinoma%20cell%20line%3aChaGo-K-1.CNhs11841.10710-109H8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel bronchogenic carcinoma cell line:ChaGo-K-1_CNhs11841_10710-109H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10710-109H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ChaGo-K-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BronchogenicCarcinomaCellLineChaGoK1_CNhs11841_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10710-109H8\ urlLabel FANTOM5 Details:\ BronchogenicCarcinomaCellLineChaGoK1_CNhs11841_tpm_rev Cl:ChaGo-K-1- bigWig bronchogenic carcinoma cell line:ChaGo-K-1_CNhs11841_10710-109H8_reverse 1 1368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10710-109H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/bronchogenic%20carcinoma%20cell%20line%3aChaGo-K-1.CNhs11841.10710-109H8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel bronchogenic carcinoma cell line:ChaGo-K-1_CNhs11841_10710-109H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10710-109H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ChaGo-K-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BronchogenicCarcinomaCellLineChaGoK1_CNhs11841_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10710-109H8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1Sin3ak20V0416101RawRep1 PFSK Sin3A V101 1 bigWig 0.348907 3017.699951 PFSK-1 Sin3Ak-20 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1368 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PFSK-1 Sin3Ak-20 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PFSK Sin3A V101 1\ subGroups view=RawSignal factor=SIN3AK20 cellType=t3PFSK1 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPfsk1Sin3ak20V0416101RawRep1\ type bigWig 0.348907 3017.699951\ NeuroblastomaCellLineCHP134_CNhs11276_ctss_fwd Cl:CHP-134+ bigWig neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_forward 0 1369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neuroblastoma%20cell%20line%3aCHP-134.CNhs11276.10508-107D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10508-107D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CHP-134+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroblastomaCellLineCHP134_CNhs11276_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4\ urlLabel FANTOM5 Details:\ NeuroblastomaCellLineCHP134_CNhs11276_tpm_fwd Cl:CHP-134+ bigWig neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_forward 1 1369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neuroblastoma%20cell%20line%3aCHP-134.CNhs11276.10508-107D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10508-107D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CHP-134+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroblastomaCellLineCHP134_CNhs11276_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1Sin3ak20V0416101PkRep2 PFSK Sin3A V101 2 broadPeak PFSK-1 Sin3Ak-20 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1369 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PFSK-1 Sin3Ak-20 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PFSK Sin3A V101 2\ subGroups view=Peaks factor=SIN3AK20 cellType=t3PFSK1 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPfsk1Sin3ak20V0416101PkRep2\ type broadPeak\ NeuroblastomaCellLineCHP134_CNhs11276_ctss_rev Cl:CHP-134- bigWig neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_reverse 0 1370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neuroblastoma%20cell%20line%3aCHP-134.CNhs11276.10508-107D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10508-107D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CHP-134-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroblastomaCellLineCHP134_CNhs11276_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4\ urlLabel FANTOM5 Details:\ NeuroblastomaCellLineCHP134_CNhs11276_tpm_rev Cl:CHP-134- bigWig neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_reverse 1 1370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neuroblastoma%20cell%20line%3aCHP-134.CNhs11276.10508-107D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10508-107D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CHP-134-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroblastomaCellLineCHP134_CNhs11276_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1Sin3ak20V0416101RawRep2 PFSK Sin3A V101 2 bigWig 0.153717 694.495972 PFSK-1 Sin3Ak-20 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1370 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PFSK-1 Sin3Ak-20 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PFSK Sin3A V101 2\ subGroups view=RawSignal factor=SIN3AK20 cellType=t3PFSK1 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPfsk1Sin3ak20V0416101RawRep2\ type bigWig 0.153717 694.495972\ CordBloodDerivedCellLineCOBLa24hInfectionC_CNhs11049_ctss_fwd Cl:COBL-a24hinfection(-C)+ bigWig cord blood derived cell line:COBL-a 24h infection(-C)_CNhs11049_10452-106G2_forward 0 1371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10452-106G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%2024h%20infection%28-C%29.CNhs11049.10452-106G2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel cord blood derived cell line:COBL-a 24h infection(-C)_CNhs11049_10452-106G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10452-106G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COBL-a24hinfection(-C)+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CordBloodDerivedCellLineCOBLa24hInfectionC_CNhs11049_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10452-106G2\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLa24hInfectionC_CNhs11049_tpm_fwd Cl:COBL-a24hinfection(-C)+ bigWig cord blood derived cell line:COBL-a 24h infection(-C)_CNhs11049_10452-106G2_forward 1 1371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10452-106G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%2024h%20infection%28-C%29.CNhs11049.10452-106G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel cord blood derived cell line:COBL-a 24h infection(-C)_CNhs11049_10452-106G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10452-106G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COBL-a24hinfection(-C)+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CordBloodDerivedCellLineCOBLa24hInfectionC_CNhs11049_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10452-106G2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1Taf1V0416101PkRep1 PFSK TAF1 V101 1 broadPeak PFSK-1 TAF1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1371 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PFSK-1 TAF1 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PFSK TAF1 V101 1\ subGroups view=Peaks factor=TAF1 cellType=t3PFSK1 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPfsk1Taf1V0416101PkRep1\ type broadPeak\ CordBloodDerivedCellLineCOBLa24hInfectionC_CNhs11049_ctss_rev Cl:COBL-a24hinfection(-C)- bigWig cord blood derived cell line:COBL-a 24h infection(-C)_CNhs11049_10452-106G2_reverse 0 1372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10452-106G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%2024h%20infection%28-C%29.CNhs11049.10452-106G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel cord blood derived cell line:COBL-a 24h infection(-C)_CNhs11049_10452-106G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10452-106G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COBL-a24hinfection(-C)-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CordBloodDerivedCellLineCOBLa24hInfectionC_CNhs11049_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10452-106G2\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLa24hInfectionC_CNhs11049_tpm_rev Cl:COBL-a24hinfection(-C)- bigWig cord blood derived cell line:COBL-a 24h infection(-C)_CNhs11049_10452-106G2_reverse 1 1372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10452-106G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%2024h%20infection%28-C%29.CNhs11049.10452-106G2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel cord blood derived cell line:COBL-a 24h infection(-C)_CNhs11049_10452-106G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10452-106G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COBL-a24hinfection(-C)-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CordBloodDerivedCellLineCOBLa24hInfectionC_CNhs11049_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10452-106G2\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1Taf1V0416101RawRep1 PFSK TAF1 V101 1 bigWig 0.715616 150.636993 PFSK-1 TAF1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1372 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PFSK-1 TAF1 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PFSK TAF1 V101 1\ subGroups view=RawSignal factor=TAF1 cellType=t3PFSK1 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPfsk1Taf1V0416101RawRep1\ type bigWig 0.715616 150.636993\ CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_ctss_fwd Cl:COBL-a24hinfection+ bigWig cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_forward 0 1373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%2024h%20infection.CNhs11050.10453-106G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10453-106G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COBL-a24hinfection+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_tpm_fwd Cl:COBL-a24hinfection+ bigWig cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_forward 1 1373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%2024h%20infection.CNhs11050.10453-106G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10453-106G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COBL-a24hinfection+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1Taf1V0416101PkRep2 PFSK TAF1 V101 2 broadPeak PFSK-1 TAF1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1373 0 0 0 127 127 127 0 0 0 regulation 1 longLabel PFSK-1 TAF1 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel PFSK TAF1 V101 2\ subGroups view=Peaks factor=TAF1 cellType=t3PFSK1 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPfsk1Taf1V0416101PkRep2\ type broadPeak\ CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_ctss_rev Cl:COBL-a24hinfection- bigWig cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_reverse 0 1374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%2024h%20infection.CNhs11050.10453-106G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10453-106G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COBL-a24hinfection-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_tpm_rev Cl:COBL-a24hinfection- bigWig cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_reverse 1 1374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%2024h%20infection.CNhs11050.10453-106G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10453-106G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COBL-a24hinfection-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1Taf1V0416101RawRep2 PFSK TAF1 V101 2 bigWig 0.118251 119.019997 PFSK-1 TAF1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1374 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PFSK-1 TAF1 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PFSK TAF1 V101 2\ subGroups view=RawSignal factor=TAF1 cellType=t3PFSK1 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPfsk1Taf1V0416101RawRep2\ type bigWig 0.118251 119.019997\ CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_ctss_fwd Cl:COBL-auntreated+ bigWig cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_forward 0 1375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%20untreated.CNhs11045.10449-106F8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10449-106F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COBL-auntreated+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_tpm_fwd Cl:COBL-auntreated+ bigWig cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_forward 1 1375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%20untreated.CNhs11045.10449-106F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10449-106F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COBL-auntreated+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1RxlchPcr2xRawRep1 PFSK RvXL PCR2 1 bigWig 0.124462 260.653992 PFSK-1 Control PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1375 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PFSK-1 Control PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PFSK RvXL PCR2 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3PFSK1 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPfsk1RxlchPcr2xRawRep1\ type bigWig 0.124462 260.653992\ CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_ctss_rev Cl:COBL-auntreated- bigWig cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_reverse 0 1376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%20untreated.CNhs11045.10449-106F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10449-106F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COBL-auntreated-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_tpm_rev Cl:COBL-auntreated- bigWig cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_reverse 1 1376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%20untreated.CNhs11045.10449-106F8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10449-106F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COBL-auntreated-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1RxlchPcr2xRawRep2 PFSK RvXL PCR2 2 bigWig 0.107553 131.511002 PFSK-1 Control PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1376 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PFSK-1 Control PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PFSK RvXL PCR2 2\ subGroups view=RawSignal factor=zRXLCH cellType=t3PFSK1 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsPfsk1RxlchPcr2xRawRep2\ type bigWig 0.107553 131.511002\ ColonCarcinomaCellLineCOLO320_CNhs10737_ctss_fwd Cl:COLO-320+ bigWig colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_forward 0 1377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%20carcinoma%20cell%20line%3aCOLO-320.CNhs10737.10420-106C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10420-106C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COLO-320+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ColonCarcinomaCellLineCOLO320_CNhs10737_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6\ urlLabel FANTOM5 Details:\ ColonCarcinomaCellLineCOLO320_CNhs10737_tpm_fwd Cl:COLO-320+ bigWig colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_forward 1 1377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%20carcinoma%20cell%20line%3aCOLO-320.CNhs10737.10420-106C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10420-106C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COLO-320+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ColonCarcinomaCellLineCOLO320_CNhs10737_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1RxlchPcr2xRawRep3 PFSK RvXL PCR2 3 bigWig 0.124458 13642.700195 PFSK-1 Control PCR2x ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB 2 1377 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PFSK-1 Control PCR2x ChIP-seq Raw Signal Rep 3 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PFSK RvXL PCR2 3\ subGroups view=RawSignal factor=zRXLCH cellType=t3PFSK1 protocol=PCR2X treatment=NONE rep=rep3\ track wgEncodeHaibTfbsPfsk1RxlchPcr2xRawRep3\ type bigWig 0.124458 13642.700195\ ColonCarcinomaCellLineCOLO320_CNhs10737_ctss_rev Cl:COLO-320- bigWig colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_reverse 0 1378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%20carcinoma%20cell%20line%3aCOLO-320.CNhs10737.10420-106C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10420-106C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COLO-320-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ColonCarcinomaCellLineCOLO320_CNhs10737_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6\ urlLabel FANTOM5 Details:\ ColonCarcinomaCellLineCOLO320_CNhs10737_tpm_rev Cl:COLO-320- bigWig colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_reverse 1 1378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%20carcinoma%20cell%20line%3aCOLO-320.CNhs10737.10420-106C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10420-106C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COLO-320-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ColonCarcinomaCellLineCOLO320_CNhs10737_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsPfsk1RxlchV0416101RawRep1 PFSK RvXL V101 1 bigWig 0.212393 233.207993 PFSK-1 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1378 0 0 0 127 127 127 0 0 0 regulation 0 longLabel PFSK-1 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel PFSK RvXL V101 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3PFSK1 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsPfsk1RxlchV0416101RawRep1\ type bigWig 0.212393 233.207993\ MelanomaCellLineCOLO679_CNhs11281_ctss_fwd Cl:COLO679+ bigWig melanoma cell line:COLO 679_CNhs11281_10514-107E1_forward 0 1379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10514-107E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/melanoma%20cell%20line%3aCOLO%20679.CNhs11281.10514-107E1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel melanoma cell line:COLO 679_CNhs11281_10514-107E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10514-107E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COLO679+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MelanomaCellLineCOLO679_CNhs11281_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10514-107E1\ urlLabel FANTOM5 Details:\ MelanomaCellLineCOLO679_CNhs11281_tpm_fwd Cl:COLO679+ bigWig melanoma cell line:COLO 679_CNhs11281_10514-107E1_forward 1 1379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10514-107E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/melanoma%20cell%20line%3aCOLO%20679.CNhs11281.10514-107E1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel melanoma cell line:COLO 679_CNhs11281_10514-107E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10514-107E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COLO679+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MelanomaCellLineCOLO679_CNhs11281_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10514-107E1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknmcFoxp2Pcr2xPkRep1 SKMC FOXP2 PCR2 1 broadPeak SK-N-MC FOXP2 PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1379 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-MC FOXP2 PCR2x ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKMC FOXP2 PCR2 1\ subGroups view=Peaks factor=FOXP2 cellType=t3SKNMC protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknmcFoxp2Pcr2xPkRep1\ type broadPeak\ MelanomaCellLineCOLO679_CNhs11281_ctss_rev Cl:COLO679- bigWig melanoma cell line:COLO 679_CNhs11281_10514-107E1_reverse 0 1380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10514-107E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/melanoma%20cell%20line%3aCOLO%20679.CNhs11281.10514-107E1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel melanoma cell line:COLO 679_CNhs11281_10514-107E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10514-107E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COLO679-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MelanomaCellLineCOLO679_CNhs11281_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10514-107E1\ urlLabel FANTOM5 Details:\ MelanomaCellLineCOLO679_CNhs11281_tpm_rev Cl:COLO679- bigWig melanoma cell line:COLO 679_CNhs11281_10514-107E1_reverse 1 1380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10514-107E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/melanoma%20cell%20line%3aCOLO%20679.CNhs11281.10514-107E1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel melanoma cell line:COLO 679_CNhs11281_10514-107E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10514-107E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COLO679-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MelanomaCellLineCOLO679_CNhs11281_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10514-107E1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknmcFoxp2Pcr2xRawRep1 SKMC FOXP2 PCR2 1 bigWig 0.231010 1273.040039 SK-N-MC FOXP2 PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1380 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-MC FOXP2 PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKMC FOXP2 PCR2 1\ subGroups view=RawSignal factor=FOXP2 cellType=t3SKNMC protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknmcFoxp2Pcr2xRawRep1\ type bigWig 0.231010 1273.040039\ DiffuseLargeBcellLymphomaCellLineCTB1_CNhs11741_ctss_fwd Cl:CTB-1+ bigWig diffuse large B-cell lymphoma cell line:CTB-1_CNhs11741_10631-108I1_forward 0 1381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10631-108I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/diffuse%20large%20B-cell%20lymphoma%20cell%20line%3aCTB-1.CNhs11741.10631-108I1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel diffuse large B-cell lymphoma cell line:CTB-1_CNhs11741_10631-108I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10631-108I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CTB-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track DiffuseLargeBcellLymphomaCellLineCTB1_CNhs11741_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10631-108I1\ urlLabel FANTOM5 Details:\ DiffuseLargeBcellLymphomaCellLineCTB1_CNhs11741_tpm_fwd Cl:CTB-1+ bigWig diffuse large B-cell lymphoma cell line:CTB-1_CNhs11741_10631-108I1_forward 1 1381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10631-108I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/diffuse%20large%20B-cell%20lymphoma%20cell%20line%3aCTB-1.CNhs11741.10631-108I1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel diffuse large B-cell lymphoma cell line:CTB-1_CNhs11741_10631-108I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10631-108I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CTB-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track DiffuseLargeBcellLymphomaCellLineCTB1_CNhs11741_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10631-108I1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknmcFoxp2Pcr2xPkRep2 SKMC FOXP2 PCR2 2 broadPeak SK-N-MC FOXP2 PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1381 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-MC FOXP2 PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKMC FOXP2 PCR2 2\ subGroups view=Peaks factor=FOXP2 cellType=t3SKNMC protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknmcFoxp2Pcr2xPkRep2\ type broadPeak\ DiffuseLargeBcellLymphomaCellLineCTB1_CNhs11741_ctss_rev Cl:CTB-1- bigWig diffuse large B-cell lymphoma cell line:CTB-1_CNhs11741_10631-108I1_reverse 0 1382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10631-108I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/diffuse%20large%20B-cell%20lymphoma%20cell%20line%3aCTB-1.CNhs11741.10631-108I1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel diffuse large B-cell lymphoma cell line:CTB-1_CNhs11741_10631-108I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10631-108I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CTB-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track DiffuseLargeBcellLymphomaCellLineCTB1_CNhs11741_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10631-108I1\ urlLabel FANTOM5 Details:\ DiffuseLargeBcellLymphomaCellLineCTB1_CNhs11741_tpm_rev Cl:CTB-1- bigWig diffuse large B-cell lymphoma cell line:CTB-1_CNhs11741_10631-108I1_reverse 1 1382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10631-108I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/diffuse%20large%20B-cell%20lymphoma%20cell%20line%3aCTB-1.CNhs11741.10631-108I1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel diffuse large B-cell lymphoma cell line:CTB-1_CNhs11741_10631-108I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10631-108I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CTB-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track DiffuseLargeBcellLymphomaCellLineCTB1_CNhs11741_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10631-108I1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknmcFoxp2Pcr2xRawRep2 SKMC FOXP2 PCR2 2 bigWig 0.296521 84.879204 SK-N-MC FOXP2 PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1382 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-MC FOXP2 PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKMC FOXP2 PCR2 2\ subGroups view=RawSignal factor=FOXP2 cellType=t3SKNMC protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknmcFoxp2Pcr2xRawRep2\ type bigWig 0.296521 84.879204\ MedulloblastomaCellLineD283Med_CNhs12805_ctss_fwd Cl:D283Med+ bigWig medulloblastoma cell line:D283 Med_CNhs12805_10838-111E1_forward 0 1383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10838-111E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulloblastoma%20cell%20line%3aD283%20Med.CNhs12805.10838-111E1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel medulloblastoma cell line:D283 Med_CNhs12805_10838-111E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10838-111E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:D283Med+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MedulloblastomaCellLineD283Med_CNhs12805_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10838-111E1\ urlLabel FANTOM5 Details:\ MedulloblastomaCellLineD283Med_CNhs12805_tpm_fwd Cl:D283Med+ bigWig medulloblastoma cell line:D283 Med_CNhs12805_10838-111E1_forward 1 1383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10838-111E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulloblastoma%20cell%20line%3aD283%20Med.CNhs12805.10838-111E1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel medulloblastoma cell line:D283 Med_CNhs12805_10838-111E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10838-111E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:D283Med+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MedulloblastomaCellLineD283Med_CNhs12805_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10838-111E1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknmcPol24h8V0416101PkRep1 SKMC Pol2-4H8 V101 1 broadPeak SK-N-MC Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1383 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-MC Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKMC Pol2-4H8 V101 1\ subGroups view=Peaks factor=POL24H8 cellType=t3SKNMC protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknmcPol24h8V0416101PkRep1\ type broadPeak\ MedulloblastomaCellLineD283Med_CNhs12805_ctss_rev Cl:D283Med- bigWig medulloblastoma cell line:D283 Med_CNhs12805_10838-111E1_reverse 0 1384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10838-111E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulloblastoma%20cell%20line%3aD283%20Med.CNhs12805.10838-111E1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel medulloblastoma cell line:D283 Med_CNhs12805_10838-111E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10838-111E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:D283Med-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MedulloblastomaCellLineD283Med_CNhs12805_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10838-111E1\ urlLabel FANTOM5 Details:\ MedulloblastomaCellLineD283Med_CNhs12805_tpm_rev Cl:D283Med- bigWig medulloblastoma cell line:D283 Med_CNhs12805_10838-111E1_reverse 1 1384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10838-111E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulloblastoma%20cell%20line%3aD283%20Med.CNhs12805.10838-111E1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel medulloblastoma cell line:D283 Med_CNhs12805_10838-111E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10838-111E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:D283Med-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MedulloblastomaCellLineD283Med_CNhs12805_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10838-111E1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknmcPol24h8V0416101RawRep1 SKMC Pol2-4H8 V101 1 bigWig 0.221962 161.089005 SK-N-MC Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1384 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-MC Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKMC Pol2-4H8 V101 1\ subGroups view=RawSignal factor=POL24H8 cellType=t3SKNMC protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknmcPol24h8V0416101RawRep1\ type bigWig 0.221962 161.089005\ CervicalCancerCellLineD98AH2_CNhs11288_ctss_fwd Cl:D98-AH2+ bigWig cervical cancer cell line:D98-AH2_CNhs11288_10552-107I3_forward 0 1385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10552-107I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cervical%20cancer%20cell%20line%3aD98-AH2.CNhs11288.10552-107I3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel cervical cancer cell line:D98-AH2_CNhs11288_10552-107I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10552-107I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:D98-AH2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CervicalCancerCellLineD98AH2_CNhs11288_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10552-107I3\ urlLabel FANTOM5 Details:\ CervicalCancerCellLineD98AH2_CNhs11288_tpm_fwd Cl:D98-AH2+ bigWig cervical cancer cell line:D98-AH2_CNhs11288_10552-107I3_forward 1 1385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10552-107I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cervical%20cancer%20cell%20line%3aD98-AH2.CNhs11288.10552-107I3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel cervical cancer cell line:D98-AH2_CNhs11288_10552-107I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10552-107I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:D98-AH2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CervicalCancerCellLineD98AH2_CNhs11288_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10552-107I3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknmcPol24h8V0416101PkRep2 SKMC Pol2-4H8 V101 2 broadPeak SK-N-MC Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1385 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-MC Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKMC Pol2-4H8 V101 2\ subGroups view=Peaks factor=POL24H8 cellType=t3SKNMC protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknmcPol24h8V0416101PkRep2\ type broadPeak\ CervicalCancerCellLineD98AH2_CNhs11288_ctss_rev Cl:D98-AH2- bigWig cervical cancer cell line:D98-AH2_CNhs11288_10552-107I3_reverse 0 1386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10552-107I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cervical%20cancer%20cell%20line%3aD98-AH2.CNhs11288.10552-107I3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel cervical cancer cell line:D98-AH2_CNhs11288_10552-107I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10552-107I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:D98-AH2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CervicalCancerCellLineD98AH2_CNhs11288_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10552-107I3\ urlLabel FANTOM5 Details:\ CervicalCancerCellLineD98AH2_CNhs11288_tpm_rev Cl:D98-AH2- bigWig cervical cancer cell line:D98-AH2_CNhs11288_10552-107I3_reverse 1 1386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10552-107I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cervical%20cancer%20cell%20line%3aD98-AH2.CNhs11288.10552-107I3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel cervical cancer cell line:D98-AH2_CNhs11288_10552-107I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10552-107I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:D98-AH2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CervicalCancerCellLineD98AH2_CNhs11288_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10552-107I3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknmcPol24h8V0416101RawRep2 SKMC Pol2-4H8 V101 2 bigWig 0.093291 164.285995 SK-N-MC Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1386 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-MC Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKMC Pol2-4H8 V101 2\ subGroups view=RawSignal factor=POL24H8 cellType=t3SKNMC protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknmcPol24h8V0416101RawRep2\ type bigWig 0.093291 164.285995\ BurkittsLymphomaCellLineDAUDI_CNhs10739_ctss_fwd Cl:DAUDI+ bigWig Burkitt's lymphoma cell line:DAUDI_CNhs10739_10422-106C8_forward 0 1387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10422-106C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Burkitt%27s%20lymphoma%20cell%20line%3aDAUDI.CNhs10739.10422-106C8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Burkitt's lymphoma cell line:DAUDI_CNhs10739_10422-106C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10422-106C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DAUDI+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BurkittsLymphomaCellLineDAUDI_CNhs10739_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10422-106C8\ urlLabel FANTOM5 Details:\ BurkittsLymphomaCellLineDAUDI_CNhs10739_tpm_fwd Cl:DAUDI+ bigWig Burkitt's lymphoma cell line:DAUDI_CNhs10739_10422-106C8_forward 1 1387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10422-106C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Burkitt%27s%20lymphoma%20cell%20line%3aDAUDI.CNhs10739.10422-106C8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Burkitt's lymphoma cell line:DAUDI_CNhs10739_10422-106C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10422-106C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DAUDI+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BurkittsLymphomaCellLineDAUDI_CNhs10739_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10422-106C8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknmcRxlchPcr2xRawRep1 SKMC RvXL PCR2 1 bigWig 0.494867 124.830002 SK-N-MC Control PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1387 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-MC Control PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKMC RvXL PCR2 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3SKNMC protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknmcRxlchPcr2xRawRep1\ type bigWig 0.494867 124.830002\ BurkittsLymphomaCellLineDAUDI_CNhs10739_ctss_rev Cl:DAUDI- bigWig Burkitt's lymphoma cell line:DAUDI_CNhs10739_10422-106C8_reverse 0 1388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10422-106C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Burkitt%27s%20lymphoma%20cell%20line%3aDAUDI.CNhs10739.10422-106C8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Burkitt's lymphoma cell line:DAUDI_CNhs10739_10422-106C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10422-106C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DAUDI-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BurkittsLymphomaCellLineDAUDI_CNhs10739_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10422-106C8\ urlLabel FANTOM5 Details:\ BurkittsLymphomaCellLineDAUDI_CNhs10739_tpm_rev Cl:DAUDI- bigWig Burkitt's lymphoma cell line:DAUDI_CNhs10739_10422-106C8_reverse 1 1388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10422-106C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Burkitt%27s%20lymphoma%20cell%20line%3aDAUDI.CNhs10739.10422-106C8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Burkitt's lymphoma cell line:DAUDI_CNhs10739_10422-106C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10422-106C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DAUDI-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BurkittsLymphomaCellLineDAUDI_CNhs10739_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10422-106C8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknmcRxlchV0416101RawRep1 SKMC RvXL V101 1 bigWig 0.140958 232.052994 SK-N-MC Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1388 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-MC Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKMC RvXL V101 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3SKNMC protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknmcRxlchV0416101RawRep1\ type bigWig 0.140958 232.052994\ PharyngealCarcinomaCellLineDetroit562_CNhs11849_ctss_fwd Cl:Detroit562+ bigWig pharyngeal carcinoma cell line:Detroit 562_CNhs11849_10723-110A3_forward 0 1389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10723-110A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pharyngeal%20carcinoma%20cell%20line%3aDetroit%20562.CNhs11849.10723-110A3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel pharyngeal carcinoma cell line:Detroit 562_CNhs11849_10723-110A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10723-110A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Detroit562+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PharyngealCarcinomaCellLineDetroit562_CNhs11849_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10723-110A3\ urlLabel FANTOM5 Details:\ PharyngealCarcinomaCellLineDetroit562_CNhs11849_tpm_fwd Cl:Detroit562+ bigWig pharyngeal carcinoma cell line:Detroit 562_CNhs11849_10723-110A3_forward 1 1389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10723-110A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pharyngeal%20carcinoma%20cell%20line%3aDetroit%20562.CNhs11849.10723-110A3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel pharyngeal carcinoma cell line:Detroit 562_CNhs11849_10723-110A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10723-110A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Detroit562+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PharyngealCarcinomaCellLineDetroit562_CNhs11849_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10723-110A3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraCtcfV0416102PkRep1 SKRA CTCF V102 1 broadPeak SK-N-SH RA CTCF v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1389 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH RA CTCF v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKRA CTCF V102 1\ subGroups view=Peaks factor=CTCF cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshraCtcfV0416102PkRep1\ type broadPeak\ PharyngealCarcinomaCellLineDetroit562_CNhs11849_ctss_rev Cl:Detroit562- bigWig pharyngeal carcinoma cell line:Detroit 562_CNhs11849_10723-110A3_reverse 0 1390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10723-110A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pharyngeal%20carcinoma%20cell%20line%3aDetroit%20562.CNhs11849.10723-110A3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel pharyngeal carcinoma cell line:Detroit 562_CNhs11849_10723-110A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10723-110A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Detroit562-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PharyngealCarcinomaCellLineDetroit562_CNhs11849_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10723-110A3\ urlLabel FANTOM5 Details:\ PharyngealCarcinomaCellLineDetroit562_CNhs11849_tpm_rev Cl:Detroit562- bigWig pharyngeal carcinoma cell line:Detroit 562_CNhs11849_10723-110A3_reverse 1 1390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10723-110A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pharyngeal%20carcinoma%20cell%20line%3aDetroit%20562.CNhs11849.10723-110A3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel pharyngeal carcinoma cell line:Detroit 562_CNhs11849_10723-110A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10723-110A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Detroit562-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PharyngealCarcinomaCellLineDetroit562_CNhs11849_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10723-110A3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraCtcfV0416102RawRep1 SKRA CTCF V102 1 bigWig 0.321108 381.796997 SK-N-SH RA CTCF v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1390 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH RA CTCF v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKRA CTCF V102 1\ subGroups view=RawSignal factor=CTCF cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshraCtcfV0416102RawRep1\ type bigWig 0.321108 381.796997\ MalignantTrichilemmalCystCellLineDJM1_CNhs10730_ctss_fwd Cl:DJM-1+ bigWig malignant trichilemmal cyst cell line:DJM-1_CNhs10730_10412-106B7_forward 0 1391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10412-106B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/malignant%20trichilemmal%20cyst%20cell%20line%3aDJM-1.CNhs10730.10412-106B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel malignant trichilemmal cyst cell line:DJM-1_CNhs10730_10412-106B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10412-106B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DJM-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MalignantTrichilemmalCystCellLineDJM1_CNhs10730_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10412-106B7\ urlLabel FANTOM5 Details:\ MalignantTrichilemmalCystCellLineDJM1_CNhs10730_tpm_fwd Cl:DJM-1+ bigWig malignant trichilemmal cyst cell line:DJM-1_CNhs10730_10412-106B7_forward 1 1391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10412-106B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/malignant%20trichilemmal%20cyst%20cell%20line%3aDJM-1.CNhs10730.10412-106B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel malignant trichilemmal cyst cell line:DJM-1_CNhs10730_10412-106B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10412-106B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DJM-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MalignantTrichilemmalCystCellLineDJM1_CNhs10730_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10412-106B7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraCtcfV0416102PkRep2 SKRA CTCF V102 2 broadPeak SK-N-SH RA CTCF v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1391 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH RA CTCF v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKRA CTCF V102 2\ subGroups view=Peaks factor=CTCF cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshraCtcfV0416102PkRep2\ type broadPeak\ MalignantTrichilemmalCystCellLineDJM1_CNhs10730_ctss_rev Cl:DJM-1- bigWig malignant trichilemmal cyst cell line:DJM-1_CNhs10730_10412-106B7_reverse 0 1392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10412-106B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/malignant%20trichilemmal%20cyst%20cell%20line%3aDJM-1.CNhs10730.10412-106B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel malignant trichilemmal cyst cell line:DJM-1_CNhs10730_10412-106B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10412-106B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DJM-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MalignantTrichilemmalCystCellLineDJM1_CNhs10730_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10412-106B7\ urlLabel FANTOM5 Details:\ MalignantTrichilemmalCystCellLineDJM1_CNhs10730_tpm_rev Cl:DJM-1- bigWig malignant trichilemmal cyst cell line:DJM-1_CNhs10730_10412-106B7_reverse 1 1392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10412-106B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/malignant%20trichilemmal%20cyst%20cell%20line%3aDJM-1.CNhs10730.10412-106B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel malignant trichilemmal cyst cell line:DJM-1_CNhs10730_10412-106B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10412-106B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DJM-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MalignantTrichilemmalCystCellLineDJM1_CNhs10730_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10412-106B7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraCtcfV0416102RawRep2 SKRA CTCF V102 2 bigWig 0.328614 322.699005 SK-N-SH RA CTCF v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1392 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH RA CTCF v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKRA CTCF V102 2\ subGroups view=RawSignal factor=CTCF cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshraCtcfV0416102RawRep2\ type bigWig 0.328614 322.699005\ SmallCellLungCarcinomaCellLineDMS144_CNhs12808_ctss_fwd Cl:DMS144+ bigWig small cell lung carcinoma cell line:DMS 144_CNhs12808_10841-111E4_forward 0 1393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10841-111E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aDMS%20144.CNhs12808.10841-111E4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel small cell lung carcinoma cell line:DMS 144_CNhs12808_10841-111E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10841-111E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DMS144+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallCellLungCarcinomaCellLineDMS144_CNhs12808_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10841-111E4\ urlLabel FANTOM5 Details:\ SmallCellLungCarcinomaCellLineDMS144_CNhs12808_tpm_fwd Cl:DMS144+ bigWig small cell lung carcinoma cell line:DMS 144_CNhs12808_10841-111E4_forward 1 1393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10841-111E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aDMS%20144.CNhs12808.10841-111E4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel small cell lung carcinoma cell line:DMS 144_CNhs12808_10841-111E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10841-111E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DMS144+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallCellLungCarcinomaCellLineDMS144_CNhs12808_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10841-111E4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraP300V0416102PkRep1 SKRA p300 V102 1 broadPeak SK-N-SH RA p300 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1393 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH RA p300 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKRA p300 V102 1\ subGroups view=Peaks factor=P300 cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshraP300V0416102PkRep1\ type broadPeak\ SmallCellLungCarcinomaCellLineDMS144_CNhs12808_ctss_rev Cl:DMS144- bigWig small cell lung carcinoma cell line:DMS 144_CNhs12808_10841-111E4_reverse 0 1394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10841-111E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aDMS%20144.CNhs12808.10841-111E4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel small cell lung carcinoma cell line:DMS 144_CNhs12808_10841-111E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10841-111E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DMS144-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallCellLungCarcinomaCellLineDMS144_CNhs12808_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10841-111E4\ urlLabel FANTOM5 Details:\ SmallCellLungCarcinomaCellLineDMS144_CNhs12808_tpm_rev Cl:DMS144- bigWig small cell lung carcinoma cell line:DMS 144_CNhs12808_10841-111E4_reverse 1 1394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10841-111E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aDMS%20144.CNhs12808.10841-111E4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel small cell lung carcinoma cell line:DMS 144_CNhs12808_10841-111E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10841-111E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DMS144-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallCellLungCarcinomaCellLineDMS144_CNhs12808_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10841-111E4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraP300V0416102RawRep1 SKRA p300 V102 1 bigWig 0.189242 189.998993 SK-N-SH RA p300 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1394 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH RA p300 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKRA p300 V102 1\ subGroups view=RawSignal factor=P300 cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshraP300V0416102RawRep1\ type bigWig 0.189242 189.998993\ LymphangiectasiaCellLineDS1_CNhs11852_ctss_fwd Cl:DS-1+ bigWig lymphangiectasia cell line:DS-1_CNhs11852_10727-110A7_forward 0 1395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10727-110A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lymphangiectasia%20cell%20line%3aDS-1.CNhs11852.10727-110A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel lymphangiectasia cell line:DS-1_CNhs11852_10727-110A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10727-110A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DS-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LymphangiectasiaCellLineDS1_CNhs11852_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10727-110A7\ urlLabel FANTOM5 Details:\ LymphangiectasiaCellLineDS1_CNhs11852_tpm_fwd Cl:DS-1+ bigWig lymphangiectasia cell line:DS-1_CNhs11852_10727-110A7_forward 1 1395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10727-110A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lymphangiectasia%20cell%20line%3aDS-1.CNhs11852.10727-110A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel lymphangiectasia cell line:DS-1_CNhs11852_10727-110A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10727-110A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DS-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LymphangiectasiaCellLineDS1_CNhs11852_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10727-110A7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraP300V0416102PkRep2 SKRA p300 V102 2 broadPeak SK-N-SH RA p300 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1395 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH RA p300 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKRA p300 V102 2\ subGroups view=Peaks factor=P300 cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshraP300V0416102PkRep2\ type broadPeak\ LymphangiectasiaCellLineDS1_CNhs11852_ctss_rev Cl:DS-1- bigWig lymphangiectasia cell line:DS-1_CNhs11852_10727-110A7_reverse 0 1396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10727-110A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lymphangiectasia%20cell%20line%3aDS-1.CNhs11852.10727-110A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel lymphangiectasia cell line:DS-1_CNhs11852_10727-110A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10727-110A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DS-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LymphangiectasiaCellLineDS1_CNhs11852_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10727-110A7\ urlLabel FANTOM5 Details:\ LymphangiectasiaCellLineDS1_CNhs11852_tpm_rev Cl:DS-1- bigWig lymphangiectasia cell line:DS-1_CNhs11852_10727-110A7_reverse 1 1396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10727-110A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lymphangiectasia%20cell%20line%3aDS-1.CNhs11852.10727-110A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel lymphangiectasia cell line:DS-1_CNhs11852_10727-110A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10727-110A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DS-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LymphangiectasiaCellLineDS1_CNhs11852_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10727-110A7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraP300V0416102RawRep2 SKRA p300 V102 2 bigWig 0.288417 190.139008 SK-N-SH RA p300 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1396 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH RA p300 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKRA p300 V102 2\ subGroups view=RawSignal factor=P300 cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshraP300V0416102RawRep2\ type bigWig 0.288417 190.139008\ ProstateCancerCellLineDU145_CNhs11260_ctss_fwd Cl:DU145+ bigWig prostate cancer cell line:DU145_CNhs11260_10490-107B4_forward 0 1397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10490-107B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/prostate%20cancer%20cell%20line%3aDU145.CNhs11260.10490-107B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel prostate cancer cell line:DU145_CNhs11260_10490-107B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10490-107B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DU145+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ProstateCancerCellLineDU145_CNhs11260_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10490-107B4\ urlLabel FANTOM5 Details:\ ProstateCancerCellLineDU145_CNhs11260_tpm_fwd Cl:DU145+ bigWig prostate cancer cell line:DU145_CNhs11260_10490-107B4_forward 1 1397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10490-107B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/prostate%20cancer%20cell%20line%3aDU145.CNhs11260.10490-107B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel prostate cancer cell line:DU145_CNhs11260_10490-107B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10490-107B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DU145+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ProstateCancerCellLineDU145_CNhs11260_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10490-107B4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraRad21V0416102PkRep1 SKRA RAD21 V102 1 broadPeak SK-N-SH RA RAD21 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1397 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH RA RAD21 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKRA RAD21 V102 1\ subGroups view=Peaks factor=RAD21 cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshraRad21V0416102PkRep1\ type broadPeak\ ProstateCancerCellLineDU145_CNhs11260_ctss_rev Cl:DU145- bigWig prostate cancer cell line:DU145_CNhs11260_10490-107B4_reverse 0 1398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10490-107B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/prostate%20cancer%20cell%20line%3aDU145.CNhs11260.10490-107B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel prostate cancer cell line:DU145_CNhs11260_10490-107B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10490-107B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DU145-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ProstateCancerCellLineDU145_CNhs11260_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10490-107B4\ urlLabel FANTOM5 Details:\ ProstateCancerCellLineDU145_CNhs11260_tpm_rev Cl:DU145- bigWig prostate cancer cell line:DU145_CNhs11260_10490-107B4_reverse 1 1398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10490-107B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/prostate%20cancer%20cell%20line%3aDU145.CNhs11260.10490-107B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel prostate cancer cell line:DU145_CNhs11260_10490-107B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10490-107B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DU145-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ProstateCancerCellLineDU145_CNhs11260_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10490-107B4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraRad21V0416102RawRep1 SKRA RAD21 V102 1 bigWig 0.157146 77.119499 SK-N-SH RA RAD21 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1398 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH RA RAD21 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKRA RAD21 V102 1\ subGroups view=RawSignal factor=RAD21 cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshraRad21V0416102RawRep1\ type bigWig 0.157146 77.119499\ SquamousCellLungCarcinomaCellLineEBC1_CNhs11273_ctss_fwd Cl:EBC-1+ bigWig squamous cell lung carcinoma cell line:EBC-1_CNhs11273_10486-107A9_forward 0 1399 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10486-107A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/squamous%20cell%20lung%20carcinoma%20cell%20line%3aEBC-1.CNhs11273.10486-107A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel squamous cell lung carcinoma cell line:EBC-1_CNhs11273_10486-107A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10486-107A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EBC-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SquamousCellLungCarcinomaCellLineEBC1_CNhs11273_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10486-107A9\ urlLabel FANTOM5 Details:\ SquamousCellLungCarcinomaCellLineEBC1_CNhs11273_tpm_fwd Cl:EBC-1+ bigWig squamous cell lung carcinoma cell line:EBC-1_CNhs11273_10486-107A9_forward 1 1399 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10486-107A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/squamous%20cell%20lung%20carcinoma%20cell%20line%3aEBC-1.CNhs11273.10486-107A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel squamous cell lung carcinoma cell line:EBC-1_CNhs11273_10486-107A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10486-107A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:EBC-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SquamousCellLungCarcinomaCellLineEBC1_CNhs11273_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10486-107A9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraRad21V0416102PkRep2 SKRA RAD21 V102 2 broadPeak SK-N-SH RA RAD21 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1399 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH RA RAD21 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKRA RAD21 V102 2\ subGroups view=Peaks factor=RAD21 cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshraRad21V0416102PkRep2\ type broadPeak\ SquamousCellLungCarcinomaCellLineEBC1_CNhs11273_ctss_rev Cl:EBC-1- bigWig squamous cell lung carcinoma cell line:EBC-1_CNhs11273_10486-107A9_reverse 0 1400 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10486-107A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/squamous%20cell%20lung%20carcinoma%20cell%20line%3aEBC-1.CNhs11273.10486-107A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel squamous cell lung carcinoma cell line:EBC-1_CNhs11273_10486-107A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10486-107A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EBC-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SquamousCellLungCarcinomaCellLineEBC1_CNhs11273_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10486-107A9\ urlLabel FANTOM5 Details:\ SquamousCellLungCarcinomaCellLineEBC1_CNhs11273_tpm_rev Cl:EBC-1- bigWig squamous cell lung carcinoma cell line:EBC-1_CNhs11273_10486-107A9_reverse 1 1400 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10486-107A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/squamous%20cell%20lung%20carcinoma%20cell%20line%3aEBC-1.CNhs11273.10486-107A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel squamous cell lung carcinoma cell line:EBC-1_CNhs11273_10486-107A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10486-107A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:EBC-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SquamousCellLungCarcinomaCellLineEBC1_CNhs11273_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10486-107A9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraRad21V0416102RawRep2 SKRA RAD21 V102 2 bigWig 0.147741 98.284599 SK-N-SH RA RAD21 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1400 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH RA RAD21 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKRA RAD21 V102 2\ subGroups view=RawSignal factor=RAD21 cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshraRad21V0416102RawRep2\ type bigWig 0.147741 98.284599\ SquamousCellCarcinomaCellLineECGI10_CNhs11252_ctss_fwd Cl:EC-GI-10+ bigWig squamous cell carcinoma cell line:EC-GI-10_CNhs11252_10463-106H4_forward 0 1401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10463-106H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/squamous%20cell%20carcinoma%20cell%20line%3aEC-GI-10.CNhs11252.10463-106H4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel squamous cell carcinoma cell line:EC-GI-10_CNhs11252_10463-106H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10463-106H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EC-GI-10+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SquamousCellCarcinomaCellLineECGI10_CNhs11252_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10463-106H4\ urlLabel FANTOM5 Details:\ SquamousCellCarcinomaCellLineECGI10_CNhs11252_tpm_fwd Cl:EC-GI-10+ bigWig squamous cell carcinoma cell line:EC-GI-10_CNhs11252_10463-106H4_forward 1 1401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10463-106H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/squamous%20cell%20carcinoma%20cell%20line%3aEC-GI-10.CNhs11252.10463-106H4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel squamous cell carcinoma cell line:EC-GI-10_CNhs11252_10463-106H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10463-106H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:EC-GI-10+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SquamousCellCarcinomaCellLineECGI10_CNhs11252_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10463-106H4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraUsf1sc8983V0416102PkRep1 SKRA USF1 V102 1 broadPeak SK-N-SH RA USF-1 8983 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1401 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH RA USF-1 8983 v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKRA USF1 V102 1\ subGroups view=Peaks factor=USF1SC8983 cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshraUsf1sc8983V0416102PkRep1\ type broadPeak\ SquamousCellCarcinomaCellLineECGI10_CNhs11252_ctss_rev Cl:EC-GI-10- bigWig squamous cell carcinoma cell line:EC-GI-10_CNhs11252_10463-106H4_reverse 0 1402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10463-106H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/squamous%20cell%20carcinoma%20cell%20line%3aEC-GI-10.CNhs11252.10463-106H4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel squamous cell carcinoma cell line:EC-GI-10_CNhs11252_10463-106H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10463-106H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EC-GI-10-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SquamousCellCarcinomaCellLineECGI10_CNhs11252_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10463-106H4\ urlLabel FANTOM5 Details:\ SquamousCellCarcinomaCellLineECGI10_CNhs11252_tpm_rev Cl:EC-GI-10- bigWig squamous cell carcinoma cell line:EC-GI-10_CNhs11252_10463-106H4_reverse 1 1402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10463-106H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/squamous%20cell%20carcinoma%20cell%20line%3aEC-GI-10.CNhs11252.10463-106H4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel squamous cell carcinoma cell line:EC-GI-10_CNhs11252_10463-106H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10463-106H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:EC-GI-10-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SquamousCellCarcinomaCellLineECGI10_CNhs11252_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10463-106H4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraUsf1sc8983V0416102RawRep1 SKRA USF1 V102 1 bigWig 0.205600 249.854996 SK-N-SH RA USF-1 8983 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1402 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH RA USF-1 8983 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKRA USF1 V102 1\ subGroups view=RawSignal factor=USF1SC8983 cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshraUsf1sc8983V0416102RawRep1\ type bigWig 0.205600 249.854996\ SmallCellGastrointestinalCarcinomaCellLineECC10_CNhs11736_ctss_fwd Cl:ECC10+ bigWig small cell gastrointestinal carcinoma cell line:ECC10_CNhs11736_10610-108F7_forward 0 1403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10610-108F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20cell%20gastrointestinal%20carcinoma%20cell%20line%3aECC10.CNhs11736.10610-108F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel small cell gastrointestinal carcinoma cell line:ECC10_CNhs11736_10610-108F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10610-108F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ECC10+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallCellGastrointestinalCarcinomaCellLineECC10_CNhs11736_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10610-108F7\ urlLabel FANTOM5 Details:\ SmallCellGastrointestinalCarcinomaCellLineECC10_CNhs11736_tpm_fwd Cl:ECC10+ bigWig small cell gastrointestinal carcinoma cell line:ECC10_CNhs11736_10610-108F7_forward 1 1403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10610-108F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20cell%20gastrointestinal%20carcinoma%20cell%20line%3aECC10.CNhs11736.10610-108F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel small cell gastrointestinal carcinoma cell line:ECC10_CNhs11736_10610-108F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10610-108F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ECC10+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallCellGastrointestinalCarcinomaCellLineECC10_CNhs11736_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10610-108F7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraUsf1sc8983V0416102PkRep2 SKRA 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wgEncodeHaibTfbsSknshraYy1sc281V0416102PkRep1\ type broadPeak\ GastrointestinalCarcinomaCellLineECC12_CNhs11738_ctss_rev Cl:ECC12- bigWig gastrointestinal carcinoma cell line:ECC12_CNhs11738_10615-108G3_reverse 0 1406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10615-108G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/gastrointestinal%20carcinoma%20cell%20line%3aECC12.CNhs11738.10615-108G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel gastrointestinal carcinoma cell line:ECC12_CNhs11738_10615-108G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10615-108G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ECC12-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastrointestinalCarcinomaCellLineECC12_CNhs11738_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10615-108G3\ urlLabel FANTOM5 Details:\ GastrointestinalCarcinomaCellLineECC12_CNhs11738_tpm_rev Cl:ECC12- bigWig gastrointestinal carcinoma cell line:ECC12_CNhs11738_10615-108G3_reverse 1 1406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10615-108G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/gastrointestinal%20carcinoma%20cell%20line%3aECC12.CNhs11738.10615-108G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel gastrointestinal carcinoma cell line:ECC12_CNhs11738_10615-108G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10615-108G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ECC12-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastrointestinalCarcinomaCellLineECC12_CNhs11738_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10615-108G3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraYy1sc281V0416102RawRep1 SKRA YY1 V102 1 bigWig 0.193427 188.203995 SK-N-SH RA YY1 281 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1406 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH RA YY1 281 v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKRA YY1 V102 1\ subGroups view=RawSignal factor=YY1SC281 cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshraYy1sc281V0416102RawRep1\ type bigWig 0.193427 188.203995\ SmallcellGastrointestinalCarcinomaCellLineECC4_CNhs11734_ctss_fwd Cl:ECC4+ bigWig small-cell gastrointestinal carcinoma cell line:ECC4_CNhs11734_10609-108F6_forward 0 1407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10609-108F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small-cell%20gastrointestinal%20carcinoma%20cell%20line%3aECC4.CNhs11734.10609-108F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel small-cell gastrointestinal carcinoma cell line:ECC4_CNhs11734_10609-108F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10609-108F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ECC4+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallcellGastrointestinalCarcinomaCellLineECC4_CNhs11734_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10609-108F6\ urlLabel FANTOM5 Details:\ SmallcellGastrointestinalCarcinomaCellLineECC4_CNhs11734_tpm_fwd Cl:ECC4+ bigWig small-cell gastrointestinal carcinoma cell line:ECC4_CNhs11734_10609-108F6_forward 1 1407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10609-108F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small-cell%20gastrointestinal%20carcinoma%20cell%20line%3aECC4.CNhs11734.10609-108F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel small-cell gastrointestinal carcinoma cell line:ECC4_CNhs11734_10609-108F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10609-108F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ECC4+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallcellGastrointestinalCarcinomaCellLineECC4_CNhs11734_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10609-108F6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraYy1sc281V0416102PkRep2 SKRA YY1 V102 2 broadPeak SK-N-SH RA YY1 281 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1407 0 0 0 127 127 127 0 0 0 regulation 1 longLabel SK-N-SH RA YY1 281 v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel SKRA YY1 V102 2\ subGroups view=Peaks factor=YY1SC281 cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshraYy1sc281V0416102PkRep2\ type broadPeak\ SmallcellGastrointestinalCarcinomaCellLineECC4_CNhs11734_ctss_rev Cl:ECC4- bigWig small-cell gastrointestinal carcinoma cell line:ECC4_CNhs11734_10609-108F6_reverse 0 1408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10609-108F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small-cell%20gastrointestinal%20carcinoma%20cell%20line%3aECC4.CNhs11734.10609-108F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel small-cell gastrointestinal carcinoma cell 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TSS_activity_TPM off\ shortLabel Cl:ECC4-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallcellGastrointestinalCarcinomaCellLineECC4_CNhs11734_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10609-108F6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraYy1sc281V0416102RawRep2 SKRA YY1 V102 2 bigWig 0.135502 209.994003 SK-N-SH RA YY1 281 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1408 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH RA YY1 281 v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKRA YY1 V102 2\ subGroups view=RawSignal factor=YY1SC281 cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsSknshraYy1sc281V0416102RawRep2\ type bigWig 0.135502 209.994003\ AcuteMyeloidLeukemiaFABM6CellLineEEB_CNhs13059_ctss_fwd Cl:EEB+ bigWig acute myeloid leukemia (FAB M6) cell line:EEB_CNhs13059_10835-111D7_forward 0 1409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10835-111D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aEEB.CNhs13059.10835-111D7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M6) cell line:EEB_CNhs13059_10835-111D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10835-111D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EEB+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM6CellLineEEB_CNhs13059_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10835-111D7\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM6CellLineEEB_CNhs13059_tpm_fwd Cl:EEB+ bigWig acute myeloid leukemia (FAB M6) cell line:EEB_CNhs13059_10835-111D7_forward 1 1409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10835-111D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aEEB.CNhs13059.10835-111D7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M6) cell line:EEB_CNhs13059_10835-111D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10835-111D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:EEB+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM6CellLineEEB_CNhs13059_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10835-111D7\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsSknshraRxlchV0416102RawRep1 SKRA RvXL V102 1 bigWig 0.175480 238.169998 SK-N-SH RA Control v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1409 0 0 0 127 127 127 0 0 0 regulation 0 longLabel SK-N-SH RA Control v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel SKRA RvXL V102 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3SKNSHRA protocol=V0416102 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsSknshraRxlchV0416102RawRep1\ type bigWig 0.175480 238.169998\ AcuteMyeloidLeukemiaFABM6CellLineEEB_CNhs13059_ctss_rev Cl:EEB- bigWig acute myeloid leukemia (FAB M6) cell line:EEB_CNhs13059_10835-111D7_reverse 0 1410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10835-111D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aEEB.CNhs13059.10835-111D7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M6) cell line:EEB_CNhs13059_10835-111D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10835-111D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EEB-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM6CellLineEEB_CNhs13059_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10835-111D7\ urlLabel FANTOM5 Details:\ 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0 0 regulation 1 longLabel T-47D CTCF 5916 DMSO v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel T47D CTCF DMSO 1\ subGroups view=Peaks factor=CTCFSC5916 cellType=t3T47D protocol=V0416102 treatment=DM002P1H rep=rep1\ track wgEncodeHaibTfbsT47dCtcfsc5916V0416102Dm002p1hPkRep1\ type broadPeak\ AcuteMyeloidLeukemiaFABM4eoCellLineEoL1_CNhs13056_ctss_fwd Cl:EoL-1+ bigWig acute myeloid leukemia (FAB M4eo) cell line:EoL-1_CNhs13056_10832-111D4_forward 0 1411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10832-111D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4eo%29%20cell%20line%3aEoL-1.CNhs13056.10832-111D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M4eo) cell line:EoL-1_CNhs13056_10832-111D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10832-111D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EoL-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM4eoCellLineEoL1_CNhs13056_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10832-111D4\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM4eoCellLineEoL1_CNhs13056_tpm_fwd Cl:EoL-1+ bigWig acute myeloid leukemia (FAB M4eo) cell line:EoL-1_CNhs13056_10832-111D4_forward 1 1411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10832-111D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4eo%29%20cell%20line%3aEoL-1.CNhs13056.10832-111D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M4eo) cell line:EoL-1_CNhs13056_10832-111D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10832-111D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:EoL-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM4eoCellLineEoL1_CNhs13056_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10832-111D4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dCtcfsc5916V0416102Dm002p1hRawRep1 T47D CTCF DMSO 1 bigWig 0.171263 247.860001 T-47D CTCF 5916 DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1411 0 0 0 127 127 127 0 0 0 regulation 0 longLabel T-47D CTCF 5916 DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel T47D CTCF DMSO 1\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t3T47D protocol=V0416102 treatment=DM002P1H rep=rep1\ track wgEncodeHaibTfbsT47dCtcfsc5916V0416102Dm002p1hRawRep1\ type bigWig 0.171263 247.860001\ AcuteMyeloidLeukemiaFABM4eoCellLineEoL1_CNhs13056_ctss_rev Cl:EoL-1- bigWig acute myeloid leukemia (FAB M4eo) cell line:EoL-1_CNhs13056_10832-111D4_reverse 0 1412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10832-111D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4eo%29%20cell%20line%3aEoL-1.CNhs13056.10832-111D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M4eo) cell line:EoL-1_CNhs13056_10832-111D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10832-111D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EoL-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM4eoCellLineEoL1_CNhs13056_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10832-111D4\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM4eoCellLineEoL1_CNhs13056_tpm_rev Cl:EoL-1- bigWig acute myeloid leukemia (FAB M4eo) cell line:EoL-1_CNhs13056_10832-111D4_reverse 1 1412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10832-111D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4eo%29%20cell%20line%3aEoL-1.CNhs13056.10832-111D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M4eo) cell line:EoL-1_CNhs13056_10832-111D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10832-111D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:EoL-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM4eoCellLineEoL1_CNhs13056_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10832-111D4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dCtcfsc5916V0416102Dm002p1hPkRep2 T47D CTCF DMSO 2 broadPeak T-47D CTCF 5916 DMSO v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1412 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D CTCF 5916 DMSO v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel T47D CTCF DMSO 2\ subGroups view=Peaks factor=CTCFSC5916 cellType=t3T47D protocol=V0416102 treatment=DM002P1H rep=rep2\ track wgEncodeHaibTfbsT47dCtcfsc5916V0416102Dm002p1hPkRep2\ type broadPeak\ AcuteMyeloidLeukemiaFABM4eoCellLineEoL3_CNhs13057_ctss_fwd Cl:EoL-3+ bigWig acute myeloid leukemia (FAB M4eo) cell line:EoL-3_CNhs13057_10833-111D5_forward 0 1413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10833-111D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4eo%29%20cell%20line%3aEoL-3.CNhs13057.10833-111D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M4eo) cell line:EoL-3_CNhs13057_10833-111D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10833-111D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EoL-3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM4eoCellLineEoL3_CNhs13057_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10833-111D5\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM4eoCellLineEoL3_CNhs13057_tpm_fwd Cl:EoL-3+ bigWig acute myeloid leukemia (FAB M4eo) cell line:EoL-3_CNhs13057_10833-111D5_forward 1 1413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10833-111D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4eo%29%20cell%20line%3aEoL-3.CNhs13057.10833-111D5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M4eo) cell line:EoL-3_CNhs13057_10833-111D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10833-111D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:EoL-3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM4eoCellLineEoL3_CNhs13057_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10833-111D5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dCtcfsc5916V0416102Dm002p1hRawRep2 T47D CTCF DMSO 2 bigWig 0.176584 285.800995 T-47D CTCF 5916 DMSO v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1413 0 0 0 127 127 127 0 0 0 regulation 0 longLabel T-47D CTCF 5916 DMSO v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel T47D CTCF DMSO 2\ subGroups view=RawSignal factor=CTCFSC5916 cellType=t3T47D protocol=V0416102 treatment=DM002P1H rep=rep2\ track wgEncodeHaibTfbsT47dCtcfsc5916V0416102Dm002p1hRawRep2\ type bigWig 0.176584 285.800995\ AcuteMyeloidLeukemiaFABM4eoCellLineEoL3_CNhs13057_ctss_rev Cl:EoL-3- bigWig acute myeloid leukemia (FAB M4eo) cell line:EoL-3_CNhs13057_10833-111D5_reverse 0 1414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10833-111D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4eo%29%20cell%20line%3aEoL-3.CNhs13057.10833-111D5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M4eo) cell line:EoL-3_CNhs13057_10833-111D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10833-111D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EoL-3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM4eoCellLineEoL3_CNhs13057_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10833-111D5\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM4eoCellLineEoL3_CNhs13057_tpm_rev Cl:EoL-3- bigWig acute myeloid leukemia (FAB M4eo) cell line:EoL-3_CNhs13057_10833-111D5_reverse 1 1414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10833-111D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4eo%29%20cell%20line%3aEoL-3.CNhs13057.10833-111D5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M4eo) cell line:EoL-3_CNhs13057_10833-111D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10833-111D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:EoL-3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM4eoCellLineEoL3_CNhs13057_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10833-111D5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dEraaV0416102Bpa1hPkRep1 T47D ERa BPA 1 broadPeak T-47D ERa a BPA v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1414 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D ERa a BPA v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel T47D ERa BPA 1\ subGroups view=Peaks factor=ERAA cellType=t3T47D protocol=V0416102 treatment=BPA1H rep=rep1\ track wgEncodeHaibTfbsT47dEraaV0416102Bpa1hPkRep1\ type broadPeak\ AcuteMyeloidLeukemiaFABM6CellLineF36E_CNhs13060_ctss_fwd Cl:F-36E+ bigWig acute myeloid leukemia (FAB M6) cell line:F-36E_CNhs13060_10836-111D8_forward 0 1415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10836-111D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aF-36E.CNhs13060.10836-111D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M6) cell line:F-36E_CNhs13060_10836-111D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10836-111D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:F-36E+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM6CellLineF36E_CNhs13060_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10836-111D8\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM6CellLineF36E_CNhs13060_tpm_fwd Cl:F-36E+ bigWig acute myeloid leukemia (FAB M6) cell line:F-36E_CNhs13060_10836-111D8_forward 1 1415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10836-111D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aF-36E.CNhs13060.10836-111D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M6) cell line:F-36E_CNhs13060_10836-111D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10836-111D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:F-36E+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM6CellLineF36E_CNhs13060_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10836-111D8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dEraaV0416102Bpa1hRawRep1 T47D ERa BPA 1 bigWig 0.198665 272.865997 T-47D ERa a BPA v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1415 0 0 0 127 127 127 0 0 0 regulation 0 longLabel T-47D ERa a BPA v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel T47D ERa BPA 1\ subGroups view=RawSignal factor=ERAA cellType=t3T47D protocol=V0416102 treatment=BPA1H rep=rep1\ track wgEncodeHaibTfbsT47dEraaV0416102Bpa1hRawRep1\ type bigWig 0.198665 272.865997\ AcuteMyeloidLeukemiaFABM6CellLineF36E_CNhs13060_ctss_rev Cl:F-36E- bigWig acute myeloid leukemia (FAB M6) cell line:F-36E_CNhs13060_10836-111D8_reverse 0 1416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10836-111D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aF-36E.CNhs13060.10836-111D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M6) cell line:F-36E_CNhs13060_10836-111D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10836-111D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:F-36E-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM6CellLineF36E_CNhs13060_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10836-111D8\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM6CellLineF36E_CNhs13060_tpm_rev Cl:F-36E- bigWig acute myeloid leukemia (FAB M6) cell line:F-36E_CNhs13060_10836-111D8_reverse 1 1416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10836-111D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aF-36E.CNhs13060.10836-111D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M6) cell line:F-36E_CNhs13060_10836-111D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10836-111D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:F-36E-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM6CellLineF36E_CNhs13060_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10836-111D8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dEraaV0416102Bpa1hPkRep2 T47D ERa BPA 2 broadPeak T-47D ERa a BPA v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1416 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D ERa a BPA v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel T47D ERa BPA 2\ subGroups view=Peaks factor=ERAA cellType=t3T47D protocol=V0416102 treatment=BPA1H rep=rep2\ track wgEncodeHaibTfbsT47dEraaV0416102Bpa1hPkRep2\ type broadPeak\ AcuteMyeloidLeukemiaFABM6CellLineF36P_CNhs13505_ctss_fwd Cl:F-36P+ bigWig acute myeloid leukemia (FAB M6) cell line:F-36P_CNhs13505_10837-111D9_forward 0 1417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10837-111D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aF-36P.CNhs13505.10837-111D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M6) cell line:F-36P_CNhs13505_10837-111D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10837-111D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:F-36P+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM6CellLineF36P_CNhs13505_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10837-111D9\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM6CellLineF36P_CNhs13505_tpm_fwd Cl:F-36P+ bigWig acute myeloid leukemia (FAB M6) cell line:F-36P_CNhs13505_10837-111D9_forward 1 1417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10837-111D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aF-36P.CNhs13505.10837-111D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M6) cell line:F-36P_CNhs13505_10837-111D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10837-111D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:F-36P+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM6CellLineF36P_CNhs13505_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10837-111D9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dEraaV0416102Bpa1hRawRep2 T47D ERa BPA 2 bigWig 0.150474 280.897003 T-47D ERa a BPA v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1417 0 0 0 127 127 127 0 0 0 regulation 0 longLabel T-47D ERa a BPA v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel T47D ERa BPA 2\ subGroups view=RawSignal factor=ERAA cellType=t3T47D protocol=V0416102 treatment=BPA1H rep=rep2\ track wgEncodeHaibTfbsT47dEraaV0416102Bpa1hRawRep2\ type bigWig 0.150474 280.897003\ AcuteMyeloidLeukemiaFABM6CellLineF36P_CNhs13505_ctss_rev Cl:F-36P- bigWig acute myeloid leukemia (FAB M6) cell line:F-36P_CNhs13505_10837-111D9_reverse 0 1418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10837-111D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aF-36P.CNhs13505.10837-111D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M6) cell line:F-36P_CNhs13505_10837-111D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10837-111D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:F-36P-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM6CellLineF36P_CNhs13505_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10837-111D9\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM6CellLineF36P_CNhs13505_tpm_rev Cl:F-36P- bigWig acute myeloid leukemia (FAB M6) cell line:F-36P_CNhs13505_10837-111D9_reverse 1 1418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10837-111D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aF-36P.CNhs13505.10837-111D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M6) cell line:F-36P_CNhs13505_10837-111D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10837-111D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:F-36P-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM6CellLineF36P_CNhs13505_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10837-111D9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dEralphaaV0416102Dm002p1hRawRep1 T47D ERa DMSO 1 bigWig 0.210769 149.223999 T-47D ERa a DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1418 0 0 0 127 127 127 0 0 0 regulation 0 longLabel T-47D ERa a DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel T47D ERa DMSO 1\ subGroups view=RawSignal factor=ERAA cellType=t3T47D protocol=V0416102 treatment=DM002P1H rep=rep1\ track wgEncodeHaibTfbsT47dEralphaaV0416102Dm002p1hRawRep1\ type bigWig 0.210769 149.223999\ NormalIntestinalEpithelialCellLineFHs74Int_CNhs11950_ctss_fwd Cl:FHs74Int+ bigWig normal intestinal epithelial cell line:FHs 74 Int_CNhs11950_10812-111B2_forward 0 1419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10812-111B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/normal%20intestinal%20epithelial%20cell%20line%3aFHs%2074%20Int.CNhs11950.10812-111B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel normal intestinal epithelial cell line:FHs 74 Int_CNhs11950_10812-111B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10812-111B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:FHs74Int+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NormalIntestinalEpithelialCellLineFHs74Int_CNhs11950_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10812-111B2\ urlLabel FANTOM5 Details:\ NormalIntestinalEpithelialCellLineFHs74Int_CNhs11950_tpm_fwd Cl:FHs74Int+ bigWig normal intestinal epithelial cell line:FHs 74 Int_CNhs11950_10812-111B2_forward 1 1419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10812-111B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/normal%20intestinal%20epithelial%20cell%20line%3aFHs%2074%20Int.CNhs11950.10812-111B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel normal intestinal epithelial cell line:FHs 74 Int_CNhs11950_10812-111B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10812-111B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:FHs74Int+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track 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wgEncodeHaibTfbsViewRawSignal off\ shortLabel T47D ERa Estra 1\ subGroups view=RawSignal factor=ERAA cellType=t3T47D protocol=V0416102 treatment=EST10NM1H rep=rep1\ track wgEncodeHaibTfbsT47dEralphaaV0416102Est10nm1hRawRep1\ type bigWig 0.211462 148.658005\ AcuteMyeloidLeukemiaFABM4CellLineFKH1_CNhs13503_ctss_rev Cl:FKH-1- bigWig acute myeloid leukemia (FAB M4) cell line:FKH-1_CNhs13503_10830-111D2_reverse 0 1422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10830-111D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4%29%20cell%20line%3aFKH-1.CNhs13503.10830-111D2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M4) cell line:FKH-1_CNhs13503_10830-111D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10830-111D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:FKH-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track 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/gbdb/hg19/fantom5/neuroectodermal%20tumor%20cell%20line%3aFU-RPNT-2.CNhs11753.10663-109C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel neuroectodermal tumor cell line:FU-RPNT-2_CNhs11753_10663-109C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10663-109C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:FU-RPNT-2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroectodermalTumorCellLineFURPNT2_CNhs11753_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10663-109C6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dEralphaaPcr2xGen1hPkRep2 T47 ERa Gen PC2 2 broadPeak T-47D ERa a Genistein PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1425 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D ERa a Genistein PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel T47 ERa Gen PC2 2\ subGroups view=Peaks factor=ERAA cellType=t3T47D protocol=PCR2X treatment=GEN1H rep=rep2\ track wgEncodeHaibTfbsT47dEralphaaPcr2xGen1hPkRep2\ type broadPeak\ NeuroectodermalTumorCellLineFURPNT2_CNhs11753_ctss_rev Cl:FU-RPNT-2- bigWig neuroectodermal tumor cell line:FU-RPNT-2_CNhs11753_10663-109C6_reverse 0 1426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10663-109C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neuroectodermal%20tumor%20cell%20line%3aFU-RPNT-2.CNhs11753.10663-109C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel neuroectodermal tumor cell line:FU-RPNT-2_CNhs11753_10663-109C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10663-109C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:FU-RPNT-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroectodermalTumorCellLineFURPNT2_CNhs11753_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10663-109C6\ urlLabel FANTOM5 Details:\ NeuroectodermalTumorCellLineFURPNT2_CNhs11753_tpm_rev Cl:FU-RPNT-2- bigWig neuroectodermal tumor cell line:FU-RPNT-2_CNhs11753_10663-109C6_reverse 1 1426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10663-109C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neuroectodermal%20tumor%20cell%20line%3aFU-RPNT-2.CNhs11753.10663-109C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel neuroectodermal tumor cell line:FU-RPNT-2_CNhs11753_10663-109C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10663-109C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:FU-RPNT-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroectodermalTumorCellLineFURPNT2_CNhs11753_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10663-109C6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dEralphaaV0416102Gen1hRawRep1 T47 ERa Gen 102 1 bigWig 0.106978 163.623993 T-47D ERa a Genistein v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1426 0 0 0 127 127 127 0 0 0 regulation 0 longLabel T-47D ERa a Genistein v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel T47 ERa Gen 102 1\ subGroups view=RawSignal factor=ERAA cellType=t3T47D protocol=V0416102 treatment=GEN1H rep=rep1\ track wgEncodeHaibTfbsT47dEralphaaV0416102Gen1hRawRep1\ type bigWig 0.106978 163.623993\ MelanomaCellLineG361_CNhs11254_ctss_fwd Cl:G-361+ bigWig melanoma cell line:G-361_CNhs11254_10465-106H6_forward 0 1427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10465-106H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/melanoma%20cell%20line%3aG-361.CNhs11254.10465-106H6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel melanoma cell line:G-361_CNhs11254_10465-106H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10465-106H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:G-361+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MelanomaCellLineG361_CNhs11254_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10465-106H6\ urlLabel FANTOM5 Details:\ MelanomaCellLineG361_CNhs11254_tpm_fwd Cl:G-361+ bigWig melanoma cell line:G-361_CNhs11254_10465-106H6_forward 1 1427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10465-106H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/melanoma%20cell%20line%3aG-361.CNhs11254.10465-106H6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel melanoma cell line:G-361_CNhs11254_10465-106H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10465-106H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:G-361+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MelanomaCellLineG361_CNhs11254_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10465-106H6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dEralphaaV0416102Gen1hRawRep2 T47 ERa Gen 102 2 bigWig 0.201361 266.501007 T-47D ERa a Genistein v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1427 0 0 0 127 127 127 0 0 0 regulation 0 longLabel T-47D ERa a Genistein v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel T47 ERa Gen 102 2\ subGroups view=RawSignal factor=ERAA cellType=t3T47D protocol=V0416102 treatment=GEN1H rep=rep2\ track wgEncodeHaibTfbsT47dEralphaaV0416102Gen1hRawRep2\ type bigWig 0.201361 266.501007\ MelanomaCellLineG361_CNhs11254_ctss_rev Cl:G-361- bigWig melanoma cell line:G-361_CNhs11254_10465-106H6_reverse 0 1428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10465-106H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/melanoma%20cell%20line%3aG-361.CNhs11254.10465-106H6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel melanoma cell line:G-361_CNhs11254_10465-106H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10465-106H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:G-361-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MelanomaCellLineG361_CNhs11254_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10465-106H6\ urlLabel FANTOM5 Details:\ MelanomaCellLineG361_CNhs11254_tpm_rev Cl:G-361- bigWig melanoma cell line:G-361_CNhs11254_10465-106H6_reverse 1 1428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10465-106H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/melanoma%20cell%20line%3aG-361.CNhs11254.10465-106H6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel melanoma cell line:G-361_CNhs11254_10465-106H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10465-106H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:G-361-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MelanomaCellLineG361_CNhs11254_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10465-106H6\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dFoxa1sc6553V0416102Dm002p1hPkRep1 T47D FOXA1 DMSO 1 broadPeak T-47D FOXA1 6553 DMSO v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1428 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D FOXA1 6553 DMSO v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel T47D FOXA1 DMSO 1\ subGroups view=Peaks factor=FOXA1SC6553 cellType=t3T47D protocol=V0416102 treatment=DM002P1H rep=rep1\ track wgEncodeHaibTfbsT47dFoxa1sc6553V0416102Dm002p1hPkRep1\ type broadPeak\ WilmsTumorCellLineG401_CNhs11892_ctss_fwd Cl:G-401+ bigWig Wilms' tumor cell line:G-401_CNhs11892_10809-111A8_forward 0 1429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10809-111A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Wilms%27%20tumor%20cell%20line%3aG-401.CNhs11892.10809-111A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Wilms' tumor cell line:G-401_CNhs11892_10809-111A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10809-111A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:G-401+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track WilmsTumorCellLineG401_CNhs11892_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10809-111A8\ urlLabel FANTOM5 Details:\ WilmsTumorCellLineG401_CNhs11892_tpm_fwd Cl:G-401+ bigWig Wilms' tumor cell line:G-401_CNhs11892_10809-111A8_forward 1 1429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10809-111A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Wilms%27%20tumor%20cell%20line%3aG-401.CNhs11892.10809-111A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Wilms' tumor cell line:G-401_CNhs11892_10809-111A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10809-111A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:G-401+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track WilmsTumorCellLineG401_CNhs11892_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10809-111A8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dFoxa1sc6553V0416102Dm002p1hRawRep1 T47D FOXA1 DMSO 1 bigWig 0.292482 169.054993 T-47D FOXA1 6553 DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1429 0 0 0 127 127 127 0 0 0 regulation 0 longLabel T-47D FOXA1 6553 DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel T47D FOXA1 DMSO 1\ subGroups view=RawSignal factor=FOXA1SC6553 cellType=t3T47D protocol=V0416102 treatment=DM002P1H rep=rep1\ track wgEncodeHaibTfbsT47dFoxa1sc6553V0416102Dm002p1hRawRep1\ type bigWig 0.292482 169.054993\ WilmsTumorCellLineG401_CNhs11892_ctss_rev Cl:G-401- bigWig Wilms' tumor cell line:G-401_CNhs11892_10809-111A8_reverse 0 1430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10809-111A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Wilms%27%20tumor%20cell%20line%3aG-401.CNhs11892.10809-111A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Wilms' tumor cell line:G-401_CNhs11892_10809-111A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10809-111A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:G-401-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track WilmsTumorCellLineG401_CNhs11892_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10809-111A8\ urlLabel FANTOM5 Details:\ WilmsTumorCellLineG401_CNhs11892_tpm_rev Cl:G-401- bigWig Wilms' tumor cell line:G-401_CNhs11892_10809-111A8_reverse 1 1430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10809-111A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Wilms%27%20tumor%20cell%20line%3aG-401.CNhs11892.10809-111A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Wilms' tumor cell line:G-401_CNhs11892_10809-111A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10809-111A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:G-401-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track WilmsTumorCellLineG401_CNhs11892_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10809-111A8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dFoxa1sc6553V0416102Dm002p1hPkRep2 T47D FOXA1 DMSO 2 broadPeak T-47D FOXA1 6553 DMSO v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1430 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D FOXA1 6553 DMSO v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel T47D FOXA1 DMSO 2\ subGroups view=Peaks factor=FOXA1SC6553 cellType=t3T47D protocol=V0416102 treatment=DM002P1H rep=rep2\ track wgEncodeHaibTfbsT47dFoxa1sc6553V0416102Dm002p1hPkRep2\ type broadPeak\ LeiomyoblastomaCellLineG402_CNhs11848_ctss_fwd Cl:G-402+ bigWig leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_forward 0 1431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyoblastoma%20cell%20line%3aG-402.CNhs11848.10721-110A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10721-110A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:G-402+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LeiomyoblastomaCellLineG402_CNhs11848_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1\ urlLabel FANTOM5 Details:\ LeiomyoblastomaCellLineG402_CNhs11848_tpm_fwd Cl:G-402+ bigWig leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_forward 1 1431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyoblastoma%20cell%20line%3aG-402.CNhs11848.10721-110A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10721-110A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:G-402+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LeiomyoblastomaCellLineG402_CNhs11848_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dFoxa1sc6553V0416102Dm002p1hRawRep2 T47D FOXA1 DMSO 2 bigWig 0.201189 168.798004 T-47D FOXA1 6553 DMSO v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1431 0 0 0 127 127 127 0 0 0 regulation 0 longLabel T-47D FOXA1 6553 DMSO v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel T47D FOXA1 DMSO 2\ subGroups view=RawSignal factor=FOXA1SC6553 cellType=t3T47D protocol=V0416102 treatment=DM002P1H rep=rep2\ track wgEncodeHaibTfbsT47dFoxa1sc6553V0416102Dm002p1hRawRep2\ type bigWig 0.201189 168.798004\ LeiomyoblastomaCellLineG402_CNhs11848_ctss_rev Cl:G-402- bigWig leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_reverse 0 1432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyoblastoma%20cell%20line%3aG-402.CNhs11848.10721-110A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10721-110A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:G-402-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyoblastomaCellLineG402_CNhs11848_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1\ urlLabel FANTOM5 Details:\ LeiomyoblastomaCellLineG402_CNhs11848_tpm_rev Cl:G-402- bigWig leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_reverse 1 1432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/leiomyoblastoma%20cell%20line%3aG-402.CNhs11848.10721-110A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10721-110A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:G-402-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyoblastomaCellLineG402_CNhs11848_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dGata3sc268V0416102Dm002p1hPkRep1 T47D GATA3 DMSO 1 broadPeak T-47D GATA3 DMSO v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1432 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D GATA3 DMSO v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel T47D GATA3 DMSO 1\ subGroups view=Peaks factor=GATA3SC268 cellType=t3T47D protocol=V0416102 treatment=DM002P1H rep=rep1\ track wgEncodeHaibTfbsT47dGata3sc268V0416102Dm002p1hPkRep1\ type broadPeak\ FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_ctss_fwd Cl:GCTTIB-223+ bigWig fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_forward 0 1433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/fibrous%20histiocytoma%20cell%20line%3aGCT%20TIB-223.CNhs11842.10711-109H9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10711-109H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GCTTIB-223+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9\ urlLabel FANTOM5 Details:\ FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_tpm_fwd Cl:GCTTIB-223+ bigWig fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_forward 1 1433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/fibrous%20histiocytoma%20cell%20line%3aGCT%20TIB-223.CNhs11842.10711-109H9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10711-109H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GCTTIB-223+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dGata3sc268V0416102Dm002p1hRawRep1 T47D GATA3 DMSO 1 bigWig 0.173697 208.783005 T-47D GATA3 DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1433 0 0 0 127 127 127 0 0 0 regulation 0 longLabel T-47D GATA3 DMSO v041610.2 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel T47D GATA3 DMSO 1\ subGroups view=RawSignal factor=GATA3SC268 cellType=t3T47D protocol=V0416102 treatment=DM002P1H rep=rep1\ track wgEncodeHaibTfbsT47dGata3sc268V0416102Dm002p1hRawRep1\ type bigWig 0.173697 208.783005\ FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_ctss_rev Cl:GCTTIB-223- bigWig fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_reverse 0 1434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/fibrous%20histiocytoma%20cell%20line%3aGCT%20TIB-223.CNhs11842.10711-109H9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10711-109H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GCTTIB-223-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9\ urlLabel FANTOM5 Details:\ FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_tpm_rev Cl:GCTTIB-223- bigWig fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_reverse 1 1434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/fibrous%20histiocytoma%20cell%20line%3aGCT%20TIB-223.CNhs11842.10711-109H9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10711-109H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GCTTIB-223-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dGata3sc268V0416102Dm002p1hPkRep2 T47D GATA3 DMSO 2 broadPeak T-47D GATA3 DMSO v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1434 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D GATA3 DMSO v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel T47D GATA3 DMSO 2\ subGroups view=Peaks factor=GATA3SC268 cellType=t3T47D protocol=V0416102 treatment=DM002P1H rep=rep2\ track wgEncodeHaibTfbsT47dGata3sc268V0416102Dm002p1hPkRep2\ type broadPeak\ GliomaCellLineGI1_CNhs10731_ctss_fwd Cl:GI-1+ bigWig glioma cell line:GI-1_CNhs10731_10413-106B8_forward 0 1435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/glioma%20cell%20line%3aGI-1.CNhs10731.10413-106B8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel glioma cell line:GI-1_CNhs10731_10413-106B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10413-106B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GI-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GliomaCellLineGI1_CNhs10731_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8\ urlLabel FANTOM5 Details:\ GliomaCellLineGI1_CNhs10731_tpm_fwd Cl:GI-1+ bigWig glioma cell line:GI-1_CNhs10731_10413-106B8_forward 1 1435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/glioma%20cell%20line%3aGI-1.CNhs10731.10413-106B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel glioma cell line:GI-1_CNhs10731_10413-106B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10413-106B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GI-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GliomaCellLineGI1_CNhs10731_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dGata3sc268V0416102Dm002p1hRawRep2 T47D GATA3 DMSO 2 bigWig 0.163613 185.701004 T-47D GATA3 DMSO v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1435 0 0 0 127 127 127 0 0 0 regulation 0 longLabel T-47D GATA3 DMSO v041610.2 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel T47D GATA3 DMSO 2\ subGroups view=RawSignal factor=GATA3SC268 cellType=t3T47D protocol=V0416102 treatment=DM002P1H rep=rep2\ track wgEncodeHaibTfbsT47dGata3sc268V0416102Dm002p1hRawRep2\ type bigWig 0.163613 185.701004\ GliomaCellLineGI1_CNhs10731_ctss_rev Cl:GI-1- bigWig glioma cell line:GI-1_CNhs10731_10413-106B8_reverse 0 1436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/glioma%20cell%20line%3aGI-1.CNhs10731.10413-106B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel glioma cell line:GI-1_CNhs10731_10413-106B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10413-106B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GI-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GliomaCellLineGI1_CNhs10731_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8\ urlLabel FANTOM5 Details:\ GliomaCellLineGI1_CNhs10731_tpm_rev Cl:GI-1- bigWig glioma cell line:GI-1_CNhs10731_10413-106B8_reverse 1 1436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/glioma%20cell%20line%3aGI-1.CNhs10731.10413-106B8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel glioma cell line:GI-1_CNhs10731_10413-106B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10413-106B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GI-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GliomaCellLineGI1_CNhs10731_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dJundV0422111PkRep1 T47D JunD V11 1 broadPeak T-47D JunD v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1436 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D JunD v042211.1 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel T47D JunD V11 1\ subGroups view=Peaks factor=JUND cellType=t3T47D protocol=V0422111 treatment=NONE rep=rep1\ track 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/gbdb/hg19/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep2.CNhs12332.10822-111C3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10822-111C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GM12878Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_tpm_fwd Cl:GM12878Br2+ bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_forward 1 1439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep2.CNhs12332.10822-111C3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10822-111C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GM12878Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dJundV0422111RawRep2 T47D JunD V11 2 bigWig 1.000000 3470.000000 T-47D JunD v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1439 0 0 0 127 127 127 0 0 0 regulation 0 longLabel T-47D JunD v042211.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel T47D JunD V11 2\ subGroups view=RawSignal factor=JUND cellType=t3T47D protocol=V0422111 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsT47dJundV0422111RawRep2\ type bigWig 1.000000 3470.000000\ BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_ctss_rev Cl:GM12878Br2- bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_reverse 0 1440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep2.CNhs12332.10822-111C3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10822-111C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GM12878Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_tpm_rev Cl:GM12878Br2- bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_reverse 1 1440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep2.CNhs12332.10822-111C3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10822-111C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GM12878Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dP300V0416102Dm002p1hPkRep1 T47D p300 DMSO 1 broadPeak T-47D p300 DMSO v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB 3 1440 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D p300 DMSO v041610.2 ChIP-seq Peaks Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel T47D p300 DMSO 1\ subGroups view=Peaks factor=P300 cellType=t3T47D protocol=V0416102 treatment=DM002P1H rep=rep1\ track wgEncodeHaibTfbsT47dP300V0416102Dm002p1hPkRep1\ type broadPeak\ BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_ctss_fwd Cl:GM12878Br3+ bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_forward 0 1441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep3.CNhs12333.10823-111C4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10823-111C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GM12878Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_tpm_fwd Cl:GM12878Br3+ bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_forward 1 1441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep3.CNhs12333.10823-111C4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10823-111C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GM12878Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ 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/gbdb/hg19/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep3.CNhs12333.10823-111C4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10823-111C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GM12878Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_tpm_rev Cl:GM12878Br3- bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_reverse 1 1442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep3.CNhs12333.10823-111C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10823-111C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GM12878Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsT47dP300V0416102Dm002p1hPkRep2 T47D p300 DMSO 2 broadPeak T-47D p300 DMSO v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1442 0 0 0 127 127 127 0 0 0 regulation 1 longLabel T-47D p300 DMSO v041610.2 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel T47D p300 DMSO 2\ subGroups view=Peaks factor=P300 cellType=t3T47D protocol=V0416102 treatment=DM002P1H rep=rep2\ track wgEncodeHaibTfbsT47dP300V0416102Dm002p1hPkRep2\ type broadPeak\ GastricCancerCellLineGSS_CNhs14241_ctss_fwd Cl:GSS+ bigWig gastric cancer cell line:GSS_CNhs14241_10560-108A2_forward 0 1443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/gastric%20cancer%20cell%20line%3aGSS.CNhs14241.10560-108A2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel gastric cancer cell line:GSS_CNhs14241_10560-108A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10560-108A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GSS+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GastricCancerCellLineGSS_CNhs14241_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2\ urlLabel FANTOM5 Details:\ GastricCancerCellLineGSS_CNhs14241_tpm_fwd Cl:GSS+ bigWig gastric cancer cell line:GSS_CNhs14241_10560-108A2_forward 1 1443 255 0 0 255 127 127 0 0 0 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protocol=V0416102 treatment=DM002P1H rep=rep2\ track wgEncodeHaibTfbsT47dP300V0416102Dm002p1hRawRep2\ type bigWig 0.203288 265.697998\ GastricCancerCellLineGSS_CNhs14241_ctss_rev Cl:GSS- bigWig gastric cancer cell line:GSS_CNhs14241_10560-108A2_reverse 0 1444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/gastric%20cancer%20cell%20line%3aGSS.CNhs14241.10560-108A2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel gastric cancer cell line:GSS_CNhs14241_10560-108A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10560-108A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GSS-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastricCancerCellLineGSS_CNhs14241_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2\ urlLabel FANTOM5 Details:\ GastricCancerCellLineGSS_CNhs14241_tpm_rev Cl:GSS- bigWig gastric cancer cell 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FANTOM5 Details:\ wgEncodeHaibTfbsU87NrsfPcr2xPkRep2V2 U87 NRSF PCR2 2 broadPeak U87 NRSF PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1448 0 0 0 127 127 127 0 0 0 regulation 1 longLabel U87 NRSF PCR2x ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel U87 NRSF PCR2 2\ subGroups view=Peaks factor=NRSF cellType=t3U87 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsU87NrsfPcr2xPkRep2V2\ type broadPeak\ SmallCellCervicalCancerCellLineHCSC1_CNhs11885_ctss_fwd Cl:HCSC-1+ bigWig small cell cervical cancer cell line:HCSC-1_CNhs11885_10800-110I8_forward 0 1449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10800-110I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20cell%20cervical%20cancer%20cell%20line%3aHCSC-1.CNhs11885.10800-110I8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel small cell cervical cancer cell line:HCSC-1_CNhs11885_10800-110I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10800-110I8 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SmallCellCervicalCancerCellLineHCSC1_CNhs11885_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10800-110I8\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsU87NrsfPcr2xRawRep2V2 U87 NRSF PCR2 2 bigWig 0.190402 245.143005 U87 NRSF PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1449 0 0 0 127 127 127 0 0 0 regulation 0 longLabel U87 NRSF PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel U87 NRSF PCR2 2\ subGroups view=RawSignal factor=NRSF cellType=t3U87 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsU87NrsfPcr2xRawRep2V2\ type bigWig 0.190402 245.143005\ SmallCellCervicalCancerCellLineHCSC1_CNhs11885_ctss_rev Cl:HCSC-1- bigWig small cell cervical cancer cell line:HCSC-1_CNhs11885_10800-110I8_reverse 0 1450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10800-110I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20cell%20cervical%20cancer%20cell%20line%3aHCSC-1.CNhs11885.10800-110I8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel small cell cervical cancer cell line:HCSC-1_CNhs11885_10800-110I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10800-110I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HCSC-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallCellCervicalCancerCellLineHCSC1_CNhs11885_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10800-110I8\ urlLabel FANTOM5 Details:\ SmallCellCervicalCancerCellLineHCSC1_CNhs11885_tpm_rev Cl:HCSC-1- bigWig small cell cervical cancer cell line:HCSC-1_CNhs11885_10800-110I8_reverse 1 1450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10800-110I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20cell%20cervical%20cancer%20cell%20line%3aHCSC-1.CNhs11885.10800-110I8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel small cell cervical cancer cell 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/gbdb/hg19/fantom5/Hodgkin%27s%20lymphoma%20cell%20line%3aHD-Mar2.CNhs11715.10435-106E3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Hodgkin's lymphoma cell line:HD-Mar2_CNhs11715_10435-106E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10435-106E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HD-Mar2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HodgkinsLymphomaCellLineHDMar2_CNhs11715_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10435-106E3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsU87Pol24h8V0416101RawRep1V2 U87 Pol2-4H8 V101 1 bigWig 0.264047 126.082001 U87 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1451 0 0 0 127 127 127 0 0 0 regulation 0 longLabel U87 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel U87 Pol2-4H8 V101 1\ subGroups view=RawSignal factor=POL24H8 cellType=t3U87 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsU87Pol24h8V0416101RawRep1V2\ type bigWig 0.264047 126.082001\ HodgkinsLymphomaCellLineHDMar2_CNhs11715_ctss_rev Cl:HD-Mar2- bigWig Hodgkin's lymphoma cell line:HD-Mar2_CNhs11715_10435-106E3_reverse 0 1452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10435-106E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hodgkin%27s%20lymphoma%20cell%20line%3aHD-Mar2.CNhs11715.10435-106E3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Hodgkin's lymphoma cell line:HD-Mar2_CNhs11715_10435-106E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10435-106E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HD-Mar2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HodgkinsLymphomaCellLineHDMar2_CNhs11715_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10435-106E3\ urlLabel FANTOM5 Details:\ HodgkinsLymphomaCellLineHDMar2_CNhs11715_tpm_rev Cl:HD-Mar2- bigWig Hodgkin's lymphoma cell line:HD-Mar2_CNhs11715_10435-106E3_reverse 1 1452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10435-106E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hodgkin%27s%20lymphoma%20cell%20line%3aHD-Mar2.CNhs11715.10435-106E3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Hodgkin's lymphoma cell line:HD-Mar2_CNhs11715_10435-106E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10435-106E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HD-Mar2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HodgkinsLymphomaCellLineHDMar2_CNhs11715_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10435-106E3\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsU87Pol24h8V0416101PkRep2V2 U87 Pol2-4H8 V101 2 broadPeak U87 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB 3 1452 0 0 0 127 127 127 0 0 0 regulation 1 longLabel U87 Pol2-4H8 v041610.1 ChIP-seq Peaks Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewPeaks off\ shortLabel U87 Pol2-4H8 V101 2\ subGroups view=Peaks factor=POL24H8 cellType=t3U87 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsU87Pol24h8V0416101PkRep2V2\ type broadPeak\ EmbryonicKidneyCellLineHEK293SLAMInfection24hr_CNhs11047_ctss_fwd Cl:HEK293/SLAMinfection,24hr+ bigWig embryonic kidney cell line: HEK293/SLAM infection, 24hr_CNhs11047_10451-106G1_forward 0 1453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10451-106G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20kidney%20cell%20line%3a%20HEK293%20SLAM%20infection%2c%2024hr.CNhs11047.10451-106G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel embryonic kidney cell line: HEK293/SLAM infection, 24hr_CNhs11047_10451-106G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10451-106G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HEK293/SLAMinfection,24hr+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicKidneyCellLineHEK293SLAMInfection24hr_CNhs11047_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10451-106G1\ urlLabel FANTOM5 Details:\ EmbryonicKidneyCellLineHEK293SLAMInfection24hr_CNhs11047_tpm_fwd Cl:HEK293/SLAMinfection,24hr+ bigWig embryonic kidney cell line: HEK293/SLAM infection, 24hr_CNhs11047_10451-106G1_forward 1 1453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10451-106G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20kidney%20cell%20line%3a%20HEK293%20SLAM%20infection%2c%2024hr.CNhs11047.10451-106G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel embryonic kidney cell line: HEK293/SLAM infection, 24hr_CNhs11047_10451-106G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10451-106G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HEK293/SLAMinfection,24hr+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicKidneyCellLineHEK293SLAMInfection24hr_CNhs11047_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10451-106G1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsU87Pol24h8V0416101RawRep2V2 U87 Pol2-4H8 V101 2 bigWig 0.115622 132.242004 U87 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1453 0 0 0 127 127 127 0 0 0 regulation 0 longLabel U87 Pol2-4H8 v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel U87 Pol2-4H8 V101 2\ subGroups view=RawSignal factor=POL24H8 cellType=t3U87 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsU87Pol24h8V0416101RawRep2V2\ type bigWig 0.115622 132.242004\ EmbryonicKidneyCellLineHEK293SLAMInfection24hr_CNhs11047_ctss_rev Cl:HEK293/SLAMinfection,24hr- bigWig embryonic kidney cell line: HEK293/SLAM infection, 24hr_CNhs11047_10451-106G1_reverse 0 1454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10451-106G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20kidney%20cell%20line%3a%20HEK293%20SLAM%20infection%2c%2024hr.CNhs11047.10451-106G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel embryonic kidney cell line: HEK293/SLAM infection, 24hr_CNhs11047_10451-106G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10451-106G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HEK293/SLAMinfection,24hr-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicKidneyCellLineHEK293SLAMInfection24hr_CNhs11047_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10451-106G1\ urlLabel FANTOM5 Details:\ EmbryonicKidneyCellLineHEK293SLAMInfection24hr_CNhs11047_tpm_rev Cl:HEK293/SLAMinfection,24hr- bigWig embryonic kidney cell line: HEK293/SLAM infection, 24hr_CNhs11047_10451-106G1_reverse 1 1454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10451-106G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20kidney%20cell%20line%3a%20HEK293%20SLAM%20infection%2c%2024hr.CNhs11047.10451-106G1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel embryonic kidney cell line: HEK293/SLAM infection, 24hr_CNhs11047_10451-106G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10451-106G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HEK293/SLAMinfection,24hr-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicKidneyCellLineHEK293SLAMInfection24hr_CNhs11047_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10451-106G1\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsU87RxlchPcr2xRawRep1V2 U87 RvXL PCR2 1 bigWig 0.336776 262.516998 U87 Control PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1454 0 0 0 127 127 127 0 0 0 regulation 0 longLabel U87 Control PCR2x ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel U87 RvXL PCR2 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3U87 protocol=PCR2X treatment=NONE rep=rep1\ track wgEncodeHaibTfbsU87RxlchPcr2xRawRep1V2\ type bigWig 0.336776 262.516998\ EmbryonicKidneyCellLineHEK293SLAMUntreated_CNhs11046_ctss_fwd Cl:HEK293/SLAMuntreated+ bigWig embryonic kidney cell line: HEK293/SLAM untreated_CNhs11046_10450-106F9_forward 0 1455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10450-106F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20kidney%20cell%20line%3a%20HEK293%20SLAM%20untreated.CNhs11046.10450-106F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel embryonic kidney cell line: HEK293/SLAM untreated_CNhs11046_10450-106F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10450-106F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HEK293/SLAMuntreated+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicKidneyCellLineHEK293SLAMUntreated_CNhs11046_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10450-106F9\ urlLabel FANTOM5 Details:\ EmbryonicKidneyCellLineHEK293SLAMUntreated_CNhs11046_tpm_fwd Cl:HEK293/SLAMuntreated+ bigWig embryonic kidney cell line: HEK293/SLAM untreated_CNhs11046_10450-106F9_forward 1 1455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10450-106F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20kidney%20cell%20line%3a%20HEK293%20SLAM%20untreated.CNhs11046.10450-106F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel embryonic kidney cell line: HEK293/SLAM untreated_CNhs11046_10450-106F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10450-106F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HEK293/SLAMuntreated+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicKidneyCellLineHEK293SLAMUntreated_CNhs11046_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10450-106F9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsU87RxlchPcr2xRawRep2V2 U87 RvXL PCR2 2 bigWig 0.150999 209.585999 U87 Control PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1455 0 0 0 127 127 127 0 0 0 regulation 0 longLabel U87 Control PCR2x ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel U87 RvXL PCR2 2\ subGroups view=RawSignal factor=zRXLCH cellType=t3U87 protocol=PCR2X treatment=NONE rep=rep2\ track wgEncodeHaibTfbsU87RxlchPcr2xRawRep2V2\ type bigWig 0.150999 209.585999\ EmbryonicKidneyCellLineHEK293SLAMUntreated_CNhs11046_ctss_rev Cl:HEK293/SLAMuntreated- bigWig embryonic kidney cell line: HEK293/SLAM untreated_CNhs11046_10450-106F9_reverse 0 1456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10450-106F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20kidney%20cell%20line%3a%20HEK293%20SLAM%20untreated.CNhs11046.10450-106F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel embryonic kidney cell line: HEK293/SLAM untreated_CNhs11046_10450-106F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10450-106F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HEK293/SLAMuntreated-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicKidneyCellLineHEK293SLAMUntreated_CNhs11046_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10450-106F9\ urlLabel FANTOM5 Details:\ EmbryonicKidneyCellLineHEK293SLAMUntreated_CNhs11046_tpm_rev Cl:HEK293/SLAMuntreated- bigWig embryonic kidney cell line: HEK293/SLAM untreated_CNhs11046_10450-106F9_reverse 1 1456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10450-106F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/embryonic%20kidney%20cell%20line%3a%20HEK293%20SLAM%20untreated.CNhs11046.10450-106F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel embryonic kidney cell line: HEK293/SLAM untreated_CNhs11046_10450-106F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10450-106F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HEK293/SLAMuntreated-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicKidneyCellLineHEK293SLAMUntreated_CNhs11046_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10450-106F9\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsU87RxlchV0416101RawRep1V2 U87 RvXL V101 1 bigWig 0.145366 640.666016 U87 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB 2 1456 0 0 0 127 127 127 0 0 0 regulation 0 longLabel U87 Control v041610.1 ChIP-seq Raw Signal Rep 1 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel U87 RvXL V101 1\ subGroups view=RawSignal factor=zRXLCH cellType=t3U87 protocol=V0416101 treatment=NONE rep=rep1\ track wgEncodeHaibTfbsU87RxlchV0416101RawRep1V2\ type bigWig 0.145366 640.666016\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep1_CNhs12325_ctss_fwd Cl:HelaS3Br1+ bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1_CNhs12325_10815-111B5_forward 0 1457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10815-111B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep1.CNhs12325.10815-111B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1_CNhs12325_10815-111B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10815-111B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HelaS3Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep1_CNhs12325_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10815-111B5\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep1_CNhs12325_tpm_fwd Cl:HelaS3Br1+ bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1_CNhs12325_10815-111B5_forward 1 1457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10815-111B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep1.CNhs12325.10815-111B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1_CNhs12325_10815-111B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10815-111B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HelaS3Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep1_CNhs12325_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10815-111B5\ urlLabel FANTOM5 Details:\ wgEncodeHaibTfbsU87RxlchV0416101RawRep2V2 U87 RvXL V101 2 bigWig 0.089594 220.559006 U87 Control v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB 2 1457 0 0 0 127 127 127 0 0 0 regulation 0 longLabel U87 Control v041610.1 ChIP-seq Raw Signal Rep 2 from ENCODE/HAIB\ parent wgEncodeHaibTfbsViewRawSignal off\ shortLabel U87 RvXL V101 2\ subGroups view=RawSignal factor=zRXLCH cellType=t3U87 protocol=V0416101 treatment=NONE rep=rep2\ track wgEncodeHaibTfbsU87RxlchV0416101RawRep2V2\ type bigWig 0.089594 220.559006\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep1_CNhs12325_ctss_rev Cl:HelaS3Br1- bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1_CNhs12325_10815-111B5_reverse 0 1458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10815-111B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep1.CNhs12325.10815-111B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1_CNhs12325_10815-111B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10815-111B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HelaS3Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep1_CNhs12325_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10815-111B5\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep1_CNhs12325_tpm_rev Cl:HelaS3Br1- bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1_CNhs12325_10815-111B5_reverse 1 1458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10815-111B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep1.CNhs12325.10815-111B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1_CNhs12325_10815-111B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10815-111B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HelaS3Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep1_CNhs12325_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10815-111B5\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_ctss_fwd Cl:HelaS3Br2+ bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_forward 0 1459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep2.CNhs12326.10816-111B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10816-111B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HelaS3Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_tpm_fwd Cl:HelaS3Br2+ bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_forward 1 1459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep2.CNhs12326.10816-111B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10816-111B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HelaS3Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_ctss_rev Cl:HelaS3Br2- bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_reverse 0 1460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep2.CNhs12326.10816-111B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10816-111B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HelaS3Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_tpm_rev Cl:HelaS3Br2- bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_reverse 1 1460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep2.CNhs12326.10816-111B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10816-111B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HelaS3Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_ctss_fwd Cl:HelaS3Br3+ bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_forward 0 1461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7 regulation 0 bigDataUrl 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/gbdb/hg19/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep3.CNhs12327.10817-111B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10817-111B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HelaS3Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_ctss_rev Cl:HelaS3Br3- bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_reverse 0 1462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep3.CNhs12327.10817-111B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10817-111B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HelaS3Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_tpm_rev Cl:HelaS3Br3- bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_reverse 1 1462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7 regulation 0 bigDataUrl 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/gbdb/hg19/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep2.CNhs12329.10819-111B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2_CNhs12329_10819-111B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10819-111B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HepG2Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep2_CNhs12329_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10819-111B9\ urlLabel FANTOM5 Details:\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep2_CNhs12329_ctss_rev Cl:HepG2Br2- bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2_CNhs12329_10819-111B9_reverse 0 1466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10819-111B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep2.CNhs12329.10819-111B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2_CNhs12329_10819-111B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10819-111B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HepG2Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep2_CNhs12329_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10819-111B9\ urlLabel FANTOM5 Details:\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep2_CNhs12329_tpm_rev Cl:HepG2Br2- bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2_CNhs12329_10819-111B9_reverse 1 1466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10819-111B9 regulation 0 bigDataUrl 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/gbdb/hg19/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep3.CNhs12330.10820-111C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3_CNhs12330_10820-111C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10820-111C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HepG2Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep3_CNhs12330_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10820-111C1\ urlLabel FANTOM5 Details:\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep3_CNhs12330_tpm_fwd Cl:HepG2Br3+ bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3_CNhs12330_10820-111C1_forward 1 1467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10820-111C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep3.CNhs12330.10820-111C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3_CNhs12330_10820-111C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10820-111C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HepG2Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep3_CNhs12330_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10820-111C1\ urlLabel FANTOM5 Details:\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep3_CNhs12330_ctss_rev Cl:HepG2Br3- bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3_CNhs12330_10820-111C1_reverse 0 1468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10820-111C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep3.CNhs12330.10820-111C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3_CNhs12330_10820-111C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10820-111C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HepG2Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep3_CNhs12330_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10820-111C1\ urlLabel FANTOM5 Details:\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep3_CNhs12330_tpm_rev Cl:HepG2Br3- bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3_CNhs12330_10820-111C1_reverse 1 1468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10820-111C1 regulation 0 bigDataUrl 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0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/osteoclastoma%20cell%20line%3aHs%20706%2eT.CNhs11835.10704-109H2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10704-109H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs706_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OsteoclastomaCellLineHs706_T_CNhs11835_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2\ urlLabel FANTOM5 Details:\ OsteoclastomaCellLineHs706_T_CNhs11835_ctss_rev Cl:Hs706_T- bigWig osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_reverse 0 1506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/osteoclastoma%20cell%20line%3aHs%20706%2eT.CNhs11835.10704-109H2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel 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sequenceTech=hCAGE category=cellLine strand=reverse\ track OsteoclastomaCellLineHs706_T_CNhs11835_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2\ urlLabel FANTOM5 Details:\ TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_ctss_fwd Cl:Hs769_T+ bigWig transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_forward 0 1507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/transitional%20cell%20carcinoma%20cell%20line%3aHs%20769%2eT.CNhs11837.10707-109H5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10707-109H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs769_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_ctss_fwd\ type bigWig\ url 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transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_reverse 0 1508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/transitional%20cell%20carcinoma%20cell%20line%3aHs%20769%2eT.CNhs11837.10707-109H5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10707-109H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs769_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5\ urlLabel FANTOM5 Details:\ TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_tpm_rev Cl:Hs769_T- bigWig transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_reverse 1 1508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/transitional%20cell%20carcinoma%20cell%20line%3aHs%20769%2eT.CNhs11837.10707-109H5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10707-109H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs769_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5\ urlLabel FANTOM5 Details:\ EwingsSarcomaCellLineHs863_T_CNhs11836_ctss_fwd Cl:Hs863_T+ bigWig Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_forward 0 1509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Ewing%27s%20sarcoma%20cell%20line%3aHs%20863%2eT.CNhs11836.10705-109H3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10705-109H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs863_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EwingsSarcomaCellLineHs863_T_CNhs11836_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3\ urlLabel FANTOM5 Details:\ EwingsSarcomaCellLineHs863_T_CNhs11836_tpm_fwd Cl:Hs863_T+ bigWig Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_forward 1 1509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Ewing%27s%20sarcoma%20cell%20line%3aHs%20863%2eT.CNhs11836.10705-109H3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10705-109H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs863_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EwingsSarcomaCellLineHs863_T_CNhs11836_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3\ urlLabel FANTOM5 Details:\ EwingsSarcomaCellLineHs863_T_CNhs11836_ctss_rev Cl:Hs863_T- bigWig Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_reverse 0 1510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Ewing%27s%20sarcoma%20cell%20line%3aHs%20863%2eT.CNhs11836.10705-109H3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10705-109H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs863_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EwingsSarcomaCellLineHs863_T_CNhs11836_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3\ urlLabel FANTOM5 Details:\ EwingsSarcomaCellLineHs863_T_CNhs11836_tpm_rev Cl:Hs863_T- bigWig Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_reverse 1 1510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Ewing%27s%20sarcoma%20cell%20line%3aHs%20863%2eT.CNhs11836.10705-109H3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10705-109H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs863_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EwingsSarcomaCellLineHs863_T_CNhs11836_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3\ urlLabel FANTOM5 Details:\ PagetoidSarcomaCellLineHs925_T_CNhs11856_ctss_fwd Cl:Hs925_T+ bigWig pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_forward 0 1511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pagetoid%20sarcoma%20cell%20line%3aHs%20925%2eT.CNhs11856.10732-110B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10732-110B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs925_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PagetoidSarcomaCellLineHs925_T_CNhs11856_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3\ urlLabel FANTOM5 Details:\ PagetoidSarcomaCellLineHs925_T_CNhs11856_tpm_fwd Cl:Hs925_T+ bigWig pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_forward 1 1511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pagetoid%20sarcoma%20cell%20line%3aHs%20925%2eT.CNhs11856.10732-110B3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10732-110B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs925_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PagetoidSarcomaCellLineHs925_T_CNhs11856_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3\ urlLabel FANTOM5 Details:\ PagetoidSarcomaCellLineHs925_T_CNhs11856_ctss_rev Cl:Hs925_T- bigWig pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_reverse 0 1512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pagetoid%20sarcoma%20cell%20line%3aHs%20925%2eT.CNhs11856.10732-110B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10732-110B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs925_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PagetoidSarcomaCellLineHs925_T_CNhs11856_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3\ urlLabel FANTOM5 Details:\ PagetoidSarcomaCellLineHs925_T_CNhs11856_tpm_rev Cl:Hs925_T- bigWig pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_reverse 1 1512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pagetoid%20sarcoma%20cell%20line%3aHs%20925%2eT.CNhs11856.10732-110B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10732-110B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs925_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PagetoidSarcomaCellLineHs925_T_CNhs11856_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3\ urlLabel FANTOM5 Details:\ OralSquamousCellCarcinomaCellLineHSC3_CNhs11717_ctss_fwd Cl:HSC-3+ bigWig oral squamous cell carcinoma cell line:HSC-3_CNhs11717_10545-107H5_forward 0 1513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10545-107H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aHSC-3.CNhs11717.10545-107H5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel oral squamous cell carcinoma cell line:HSC-3_CNhs11717_10545-107H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10545-107H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HSC-3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OralSquamousCellCarcinomaCellLineHSC3_CNhs11717_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10545-107H5\ urlLabel FANTOM5 Details:\ OralSquamousCellCarcinomaCellLineHSC3_CNhs11717_tpm_fwd Cl:HSC-3+ bigWig oral squamous cell carcinoma cell line:HSC-3_CNhs11717_10545-107H5_forward 1 1513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10545-107H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aHSC-3.CNhs11717.10545-107H5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel oral squamous cell carcinoma cell line:HSC-3_CNhs11717_10545-107H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10545-107H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HSC-3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OralSquamousCellCarcinomaCellLineHSC3_CNhs11717_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10545-107H5\ urlLabel FANTOM5 Details:\ OralSquamousCellCarcinomaCellLineHSC3_CNhs11717_ctss_rev Cl:HSC-3- bigWig oral squamous cell carcinoma cell line:HSC-3_CNhs11717_10545-107H5_reverse 0 1514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10545-107H5 regulation 0 bigDataUrl 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http://fantom.gsc.riken.jp/5/sstar/FF:10614-108G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/gastric%20adenocarcinoma%20cell%20line%3aMKN1.CNhs11737.10614-108G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel gastric adenocarcinoma cell line:MKN1_CNhs11737_10614-108G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10614-108G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MKN1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GastricAdenocarcinomaCellLineMKN1_CNhs11737_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10614-108G2\ urlLabel FANTOM5 Details:\ GastricAdenocarcinomaCellLineMKN1_CNhs11737_ctss_rev Cl:MKN1- bigWig gastric adenocarcinoma cell line:MKN1_CNhs11737_10614-108G2_reverse 0 1648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10614-108G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/gastric%20adenocarcinoma%20cell%20line%3aMKN1.CNhs11737.10614-108G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel gastric adenocarcinoma cell line:MKN1_CNhs11737_10614-108G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10614-108G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MKN1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastricAdenocarcinomaCellLineMKN1_CNhs11737_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10614-108G2\ urlLabel FANTOM5 Details:\ GastricAdenocarcinomaCellLineMKN1_CNhs11737_tpm_rev Cl:MKN1- bigWig gastric adenocarcinoma cell line:MKN1_CNhs11737_10614-108G2_reverse 1 1648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10614-108G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/gastric%20adenocarcinoma%20cell%20line%3aMKN1.CNhs11737.10614-108G2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel gastric adenocarcinoma cell line:MKN1_CNhs11737_10614-108G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10614-108G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MKN1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastricAdenocarcinomaCellLineMKN1_CNhs11737_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10614-108G2\ urlLabel FANTOM5 Details:\ GastricAdenocarcinomaCellLineMKN45_CNhs11819_ctss_fwd Cl:MKN45+ bigWig gastric adenocarcinoma cell line:MKN45_CNhs11819_10612-108F9_forward 0 1649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10612-108F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/gastric%20adenocarcinoma%20cell%20line%3aMKN45.CNhs11819.10612-108F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel gastric adenocarcinoma cell line:MKN45_CNhs11819_10612-108F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10612-108F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MKN45+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GastricAdenocarcinomaCellLineMKN45_CNhs11819_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10612-108F9\ urlLabel FANTOM5 Details:\ GastricAdenocarcinomaCellLineMKN45_CNhs11819_tpm_fwd Cl:MKN45+ bigWig gastric adenocarcinoma cell line:MKN45_CNhs11819_10612-108F9_forward 1 1649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10612-108F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/gastric%20adenocarcinoma%20cell%20line%3aMKN45.CNhs11819.10612-108F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel gastric adenocarcinoma cell line:MKN45_CNhs11819_10612-108F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10612-108F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MKN45+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GastricAdenocarcinomaCellLineMKN45_CNhs11819_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10612-108F9\ urlLabel FANTOM5 Details:\ GastricAdenocarcinomaCellLineMKN45_CNhs11819_ctss_rev Cl:MKN45- bigWig gastric adenocarcinoma cell line:MKN45_CNhs11819_10612-108F9_reverse 0 1650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10612-108F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/gastric%20adenocarcinoma%20cell%20line%3aMKN45.CNhs11819.10612-108F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel gastric adenocarcinoma cell line:MKN45_CNhs11819_10612-108F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10612-108F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MKN45-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastricAdenocarcinomaCellLineMKN45_CNhs11819_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10612-108F9\ urlLabel FANTOM5 Details:\ GastricAdenocarcinomaCellLineMKN45_CNhs11819_tpm_rev Cl:MKN45- bigWig gastric adenocarcinoma cell line:MKN45_CNhs11819_10612-108F9_reverse 1 1650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10612-108F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/gastric%20adenocarcinoma%20cell%20line%3aMKN45.CNhs11819.10612-108F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel gastric adenocarcinoma cell line:MKN45_CNhs11819_10612-108F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10612-108F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MKN45-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastricAdenocarcinomaCellLineMKN45_CNhs11819_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10612-108F9\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM7CellLineMKPL1_CNhs11888_ctss_fwd Cl:MKPL-1+ bigWig acute myeloid leukemia (FAB M7) cell line:MKPL-1_CNhs11888_10802-111A1_forward 0 1651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10802-111A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M7%29%20cell%20line%3aMKPL-1.CNhs11888.10802-111A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M7) cell line:MKPL-1_CNhs11888_10802-111A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10802-111A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MKPL-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM7CellLineMKPL1_CNhs11888_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10802-111A1\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM7CellLineMKPL1_CNhs11888_tpm_fwd Cl:MKPL-1+ bigWig acute myeloid leukemia (FAB M7) cell line:MKPL-1_CNhs11888_10802-111A1_forward 1 1651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10802-111A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M7%29%20cell%20line%3aMKPL-1.CNhs11888.10802-111A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M7) cell line:MKPL-1_CNhs11888_10802-111A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10802-111A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MKPL-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM7CellLineMKPL1_CNhs11888_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10802-111A1\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM7CellLineMKPL1_CNhs11888_ctss_rev Cl:MKPL-1- bigWig acute myeloid leukemia (FAB M7) cell line:MKPL-1_CNhs11888_10802-111A1_reverse 0 1652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10802-111A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M7%29%20cell%20line%3aMKPL-1.CNhs11888.10802-111A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M7) cell line:MKPL-1_CNhs11888_10802-111A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10802-111A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MKPL-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM7CellLineMKPL1_CNhs11888_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10802-111A1\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM7CellLineMKPL1_CNhs11888_tpm_rev Cl:MKPL-1- bigWig acute myeloid leukemia (FAB M7) cell line:MKPL-1_CNhs11888_10802-111A1_reverse 1 1652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10802-111A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M7%29%20cell%20line%3aMKPL-1.CNhs11888.10802-111A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M7) cell line:MKPL-1_CNhs11888_10802-111A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10802-111A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MKPL-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM7CellLineMKPL1_CNhs11888_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10802-111A1\ urlLabel FANTOM5 Details:\ LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_ctss_fwd Cl:MLMA+ bigWig lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_forward 0 1653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lymphoma%2c%20malignant%2c%20hairy%20B-cell%20cell%20line%3aMLMA.CNhs11935.10775-110G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10775-110G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MLMA+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1\ urlLabel FANTOM5 Details:\ LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_tpm_fwd Cl:MLMA+ bigWig lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_forward 1 1653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lymphoma%2c%20malignant%2c%20hairy%20B-cell%20cell%20line%3aMLMA.CNhs11935.10775-110G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10775-110G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MLMA+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1\ urlLabel FANTOM5 Details:\ LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_ctss_rev Cl:MLMA- bigWig lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_reverse 0 1654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lymphoma%2c%20malignant%2c%20hairy%20B-cell%20cell%20line%3aMLMA.CNhs11935.10775-110G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10775-110G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MLMA-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1\ urlLabel FANTOM5 Details:\ LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_tpm_rev Cl:MLMA- bigWig lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_reverse 1 1654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lymphoma%2c%20malignant%2c%20hairy%20B-cell%20cell%20line%3aMLMA.CNhs11935.10775-110G1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10775-110G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MLMA-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1\ urlLabel FANTOM5 Details:\ HairyCellLeukemiaCellLineMo_CNhs11843_ctss_fwd Cl:Mo+ bigWig hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_forward 0 1655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hairy%20cell%20leukemia%20cell%20line%3aMo.CNhs11843.10712-109I1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10712-109I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mo+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HairyCellLeukemiaCellLineMo_CNhs11843_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1\ urlLabel FANTOM5 Details:\ HairyCellLeukemiaCellLineMo_CNhs11843_tpm_fwd Cl:Mo+ bigWig hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_forward 1 1655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hairy%20cell%20leukemia%20cell%20line%3aMo.CNhs11843.10712-109I1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10712-109I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mo+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HairyCellLeukemiaCellLineMo_CNhs11843_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1\ urlLabel FANTOM5 Details:\ HairyCellLeukemiaCellLineMo_CNhs11843_ctss_rev Cl:Mo- bigWig hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_reverse 0 1656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hairy%20cell%20leukemia%20cell%20line%3aMo.CNhs11843.10712-109I1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10712-109I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mo-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HairyCellLeukemiaCellLineMo_CNhs11843_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1\ urlLabel FANTOM5 Details:\ HairyCellLeukemiaCellLineMo_CNhs11843_tpm_rev Cl:Mo- bigWig hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_reverse 1 1656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hairy%20cell%20leukemia%20cell%20line%3aMo.CNhs11843.10712-109I1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10712-109I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mo-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HairyCellLeukemiaCellLineMo_CNhs11843_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1\ urlLabel FANTOM5 Details:\ MerkelCellCarcinomaCellLineMS1_CNhs12839_ctss_fwd Cl:MS-1+ bigWig merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_forward 0 1657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/merkel%20cell%20carcinoma%20cell%20line%3aMS-1.CNhs12839.10844-111E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10844-111E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MS-1+\ subGroups sequenceTech=hCAGE category=cellLine 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Cl:MS-1- bigWig merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_reverse 0 1658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/merkel%20cell%20carcinoma%20cell%20line%3aMS-1.CNhs12839.10844-111E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10844-111E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MS-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MerkelCellCarcinomaCellLineMS1_CNhs12839_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7\ urlLabel FANTOM5 Details:\ MerkelCellCarcinomaCellLineMS1_CNhs12839_tpm_rev Cl:MS-1- bigWig merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_reverse 1 1658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7 regulation 0 bigDataUrl 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shortLabel Cl:NCI-H358-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BronchioalveolarCarcinomaCellLineNCIH358_CNhs11840_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10709-109H7\ urlLabel FANTOM5 Details:\ LungAdenocarcinomaPapillaryCellLineNCIH441_CNhs14245_ctss_fwd Cl:NCI-H441+ bigWig lung adenocarcinoma, papillary cell line:NCI-H441_CNhs14245_10742-110C4_forward 0 1681 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10742-110C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%20adenocarcinoma%2c%20papillary%20cell%20line%3aNCI-H441.CNhs14245.10742-110C4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel lung adenocarcinoma, papillary cell line:NCI-H441_CNhs14245_10742-110C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10742-110C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H441+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LungAdenocarcinomaPapillaryCellLineNCIH441_CNhs14245_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10742-110C4\ urlLabel FANTOM5 Details:\ LungAdenocarcinomaPapillaryCellLineNCIH441_CNhs14245_tpm_fwd Cl:NCI-H441+ bigWig lung adenocarcinoma, papillary cell line:NCI-H441_CNhs14245_10742-110C4_forward 1 1681 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10742-110C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%20adenocarcinoma%2c%20papillary%20cell%20line%3aNCI-H441.CNhs14245.10742-110C4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel lung adenocarcinoma, papillary cell line:NCI-H441_CNhs14245_10742-110C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10742-110C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H441+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LungAdenocarcinomaPapillaryCellLineNCIH441_CNhs14245_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10742-110C4\ urlLabel FANTOM5 Details:\ LungAdenocarcinomaPapillaryCellLineNCIH441_CNhs14245_ctss_rev Cl:NCI-H441- bigWig lung adenocarcinoma, papillary cell line:NCI-H441_CNhs14245_10742-110C4_reverse 0 1682 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10742-110C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%20adenocarcinoma%2c%20papillary%20cell%20line%3aNCI-H441.CNhs14245.10742-110C4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel lung adenocarcinoma, papillary cell line:NCI-H441_CNhs14245_10742-110C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10742-110C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H441-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LungAdenocarcinomaPapillaryCellLineNCIH441_CNhs14245_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10742-110C4\ urlLabel FANTOM5 Details:\ LungAdenocarcinomaPapillaryCellLineNCIH441_CNhs14245_tpm_rev Cl:NCI-H441- bigWig lung adenocarcinoma, papillary cell line:NCI-H441_CNhs14245_10742-110C4_reverse 1 1682 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10742-110C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%20adenocarcinoma%2c%20papillary%20cell%20line%3aNCI-H441.CNhs14245.10742-110C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel lung adenocarcinoma, papillary cell line:NCI-H441_CNhs14245_10742-110C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10742-110C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H441-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LungAdenocarcinomaPapillaryCellLineNCIH441_CNhs14245_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10742-110C4\ urlLabel FANTOM5 Details:\ LargeCellLungCarcinomaCellLineNCIH460_CNhs12806_ctss_fwd Cl:NCI-H460+ bigWig large cell lung carcinoma cell line:NCI-H460_CNhs12806_10839-111E2_forward 0 1683 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10839-111E2 regulation 0 bigDataUrl 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carcinoma cell line:NCI-H460_CNhs12806_10839-111E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10839-111E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H460+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LargeCellLungCarcinomaCellLineNCIH460_CNhs12806_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10839-111E2\ urlLabel FANTOM5 Details:\ LargeCellLungCarcinomaCellLineNCIH460_CNhs12806_ctss_rev Cl:NCI-H460- bigWig large cell lung carcinoma cell line:NCI-H460_CNhs12806_10839-111E2_reverse 0 1684 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10839-111E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/large%20cell%20lung%20carcinoma%20cell%20line%3aNCI-H460.CNhs12806.10839-111E2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel large cell lung carcinoma cell line:NCI-H460_CNhs12806_10839-111E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10839-111E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts 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url http://fantom.gsc.riken.jp/5/sstar/FF:10839-111E2\ urlLabel FANTOM5 Details:\ BronchioalveolarCarcinomaCellLineNCIH650_CNhs14138_ctss_fwd Cl:NCI-H650+ bigWig bronchioalveolar carcinoma cell line:NCI-H650_CNhs14138_10715-109I4_forward 0 1685 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10715-109I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/bronchioalveolar%20carcinoma%20cell%20line%3aNCI-H650.CNhs14138.10715-109I4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel bronchioalveolar carcinoma cell line:NCI-H650_CNhs14138_10715-109I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10715-109I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H650+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BronchioalveolarCarcinomaCellLineNCIH650_CNhs14138_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10715-109I4\ urlLabel FANTOM5 Details:\ BronchioalveolarCarcinomaCellLineNCIH650_CNhs14138_tpm_fwd Cl:NCI-H650+ 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regulation 0 bigDataUrl /gbdb/hg19/fantom5/bronchioalveolar%20carcinoma%20cell%20line%3aNCI-H650.CNhs14138.10715-109I4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel bronchioalveolar carcinoma cell line:NCI-H650_CNhs14138_10715-109I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10715-109I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H650-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BronchioalveolarCarcinomaCellLineNCIH650_CNhs14138_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10715-109I4\ urlLabel FANTOM5 Details:\ BronchioalveolarCarcinomaCellLineNCIH650_CNhs14138_tpm_rev Cl:NCI-H650- bigWig bronchioalveolar carcinoma cell line:NCI-H650_CNhs14138_10715-109I4_reverse 1 1686 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10715-109I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/bronchioalveolar%20carcinoma%20cell%20line%3aNCI-H650.CNhs14138.10715-109I4.hg19.tpm.rev.bw\ color 0,0,255\ 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subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CarcinoidCellLineNCIH727_CNhs14244_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10735-110B6\ urlLabel FANTOM5 Details:\ CarcinoidCellLineNCIH727_CNhs14244_tpm_fwd Cl:NCI-H727+ bigWig carcinoid cell line:NCI-H727_CNhs14244_10735-110B6_forward 1 1687 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10735-110B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/carcinoid%20cell%20line%3aNCI-H727.CNhs14244.10735-110B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel carcinoid cell line:NCI-H727_CNhs14244_10735-110B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10735-110B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H727+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CarcinoidCellLineNCIH727_CNhs14244_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10735-110B6\ urlLabel FANTOM5 Details:\ CarcinoidCellLineNCIH727_CNhs14244_ctss_rev Cl:NCI-H727- bigWig carcinoid cell line:NCI-H727_CNhs14244_10735-110B6_reverse 0 1688 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10735-110B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/carcinoid%20cell%20line%3aNCI-H727.CNhs14244.10735-110B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel carcinoid cell line:NCI-H727_CNhs14244_10735-110B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10735-110B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H727-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CarcinoidCellLineNCIH727_CNhs14244_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10735-110B6\ urlLabel FANTOM5 Details:\ CarcinoidCellLineNCIH727_CNhs14244_tpm_rev Cl:NCI-H727- bigWig carcinoid cell line:NCI-H727_CNhs14244_10735-110B6_reverse 1 1688 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10735-110B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/carcinoid%20cell%20line%3aNCI-H727.CNhs14244.10735-110B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel carcinoid cell line:NCI-H727_CNhs14244_10735-110B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10735-110B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H727-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CarcinoidCellLineNCIH727_CNhs14244_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10735-110B6\ urlLabel FANTOM5 Details:\ SmallCellLungCarcinomaCellLineNCIH82_CNhs12809_ctss_fwd Cl:NCI-H82+ bigWig small cell lung carcinoma cell line:NCI-H82_CNhs12809_10842-111E5_forward 0 1689 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10842-111E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aNCI-H82.CNhs12809.10842-111E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel small cell lung carcinoma cell line:NCI-H82_CNhs12809_10842-111E5_forward\ 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category=cellLine strand=forward\ track SmallCellLungCarcinomaCellLineNCIH82_CNhs12809_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10842-111E5\ urlLabel FANTOM5 Details:\ SmallCellLungCarcinomaCellLineNCIH82_CNhs12809_ctss_rev Cl:NCI-H82- bigWig small cell lung carcinoma cell line:NCI-H82_CNhs12809_10842-111E5_reverse 0 1690 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10842-111E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aNCI-H82.CNhs12809.10842-111E5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel small cell lung carcinoma cell line:NCI-H82_CNhs12809_10842-111E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10842-111E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H82-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallCellLungCarcinomaCellLineNCIH82_CNhs12809_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10842-111E5\ urlLabel FANTOM5 Details:\ SmallCellLungCarcinomaCellLineNCIH82_CNhs12809_tpm_rev Cl:NCI-H82- bigWig small cell lung carcinoma cell line:NCI-H82_CNhs12809_10842-111E5_reverse 1 1690 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10842-111E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aNCI-H82.CNhs12809.10842-111E5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel small cell lung carcinoma cell line:NCI-H82_CNhs12809_10842-111E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10842-111E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H82-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallCellLungCarcinomaCellLineNCIH82_CNhs12809_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10842-111E5\ urlLabel FANTOM5 Details:\ TeratocarcinomaCellLineNCRG1_CNhs11884_ctss_fwd Cl:NCR-G1+ bigWig teratocarcinoma cell line:NCR-G1_CNhs11884_10798-110I6_forward 0 1691 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10798-110I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/teratocarcinoma%20cell%20line%3aNCR-G1.CNhs11884.10798-110I6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel teratocarcinoma cell line:NCR-G1_CNhs11884_10798-110I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10798-110I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCR-G1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TeratocarcinomaCellLineNCRG1_CNhs11884_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10798-110I6\ urlLabel FANTOM5 Details:\ TeratocarcinomaCellLineNCRG1_CNhs11884_tpm_fwd Cl:NCR-G1+ bigWig teratocarcinoma cell line:NCR-G1_CNhs11884_10798-110I6_forward 1 1691 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10798-110I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/teratocarcinoma%20cell%20line%3aNCR-G1.CNhs11884.10798-110I6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel teratocarcinoma cell line:NCR-G1_CNhs11884_10798-110I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10798-110I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCR-G1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TeratocarcinomaCellLineNCRG1_CNhs11884_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10798-110I6\ urlLabel FANTOM5 Details:\ TeratocarcinomaCellLineNCRG1_CNhs11884_ctss_rev Cl:NCR-G1- bigWig teratocarcinoma cell line:NCR-G1_CNhs11884_10798-110I6_reverse 0 1692 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10798-110I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/teratocarcinoma%20cell%20line%3aNCR-G1.CNhs11884.10798-110I6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel teratocarcinoma cell line:NCR-G1_CNhs11884_10798-110I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10798-110I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCR-G1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TeratocarcinomaCellLineNCRG1_CNhs11884_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10798-110I6\ urlLabel FANTOM5 Details:\ TeratocarcinomaCellLineNCRG1_CNhs11884_tpm_rev Cl:NCR-G1- bigWig teratocarcinoma cell line:NCR-G1_CNhs11884_10798-110I6_reverse 1 1692 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10798-110I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/teratocarcinoma%20cell%20line%3aNCR-G1.CNhs11884.10798-110I6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel teratocarcinoma cell line:NCR-G1_CNhs11884_10798-110I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10798-110I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCR-G1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TeratocarcinomaCellLineNCRG1_CNhs11884_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10798-110I6\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineNEC14_CNhs12351_ctss_fwd Cl:NEC14+ bigWig testicular germ cell embryonal carcinoma cell line:NEC14_CNhs12351_10591-108D6_forward 0 1693 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10591-108D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC14.CNhs12351.10591-108D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel testicular germ cell embryonal carcinoma cell line:NEC14_CNhs12351_10591-108D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10591-108D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NEC14+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC14_CNhs12351_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10591-108D6\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineNEC14_CNhs12351_tpm_fwd Cl:NEC14+ bigWig testicular germ cell embryonal carcinoma cell line:NEC14_CNhs12351_10591-108D6_forward 1 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/gbdb/hg19/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC14.CNhs12351.10591-108D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel testicular germ cell embryonal carcinoma cell line:NEC14_CNhs12351_10591-108D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10591-108D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NEC14-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC14_CNhs12351_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10591-108D6\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineNEC14_CNhs12351_tpm_rev Cl:NEC14- bigWig testicular germ cell embryonal carcinoma cell line:NEC14_CNhs12351_10591-108D6_reverse 1 1694 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10591-108D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC14.CNhs12351.10591-108D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel testicular germ cell embryonal carcinoma cell line:NEC14_CNhs12351_10591-108D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10591-108D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NEC14-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC14_CNhs12351_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10591-108D6\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineNEC15_CNhs12362_ctss_fwd Cl:NEC15+ bigWig testicular germ cell embryonal carcinoma cell line:NEC15_CNhs12362_10593-108D8_forward 0 1695 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10593-108D8 regulation 0 bigDataUrl 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/gbdb/hg19/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC15.CNhs12362.10593-108D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel testicular germ cell embryonal carcinoma cell line:NEC15_CNhs12362_10593-108D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10593-108D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NEC15+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC15_CNhs12362_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10593-108D8\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineNEC15_CNhs12362_ctss_rev Cl:NEC15- bigWig testicular germ cell embryonal carcinoma cell line:NEC15_CNhs12362_10593-108D8_reverse 0 1696 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10593-108D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC15.CNhs12362.10593-108D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel testicular germ cell embryonal carcinoma cell line:NEC15_CNhs12362_10593-108D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10593-108D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NEC15-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC15_CNhs12362_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10593-108D8\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineNEC15_CNhs12362_tpm_rev Cl:NEC15- bigWig testicular germ cell embryonal carcinoma cell line:NEC15_CNhs12362_10593-108D8_reverse 1 1696 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10593-108D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC15.CNhs12362.10593-108D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel testicular germ cell embryonal carcinoma cell line:NEC15_CNhs12362_10593-108D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10593-108D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NEC15-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC15_CNhs12362_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10593-108D8\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineNEC8_CNhs11726_ctss_fwd Cl:NEC8+ bigWig testicular germ cell embryonal carcinoma cell line:NEC8_CNhs11726_10590-108D5_forward 0 1697 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10590-108D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC8.CNhs11726.10590-108D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel testicular germ cell embryonal carcinoma cell line:NEC8_CNhs11726_10590-108D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10590-108D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NEC8+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC8_CNhs11726_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10590-108D5\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineNEC8_CNhs11726_tpm_fwd Cl:NEC8+ bigWig testicular germ cell embryonal carcinoma cell line:NEC8_CNhs11726_10590-108D5_forward 1 1697 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10590-108D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC8.CNhs11726.10590-108D5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel testicular germ cell embryonal carcinoma cell line:NEC8_CNhs11726_10590-108D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10590-108D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NEC8+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC8_CNhs11726_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10590-108D5\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineNEC8_CNhs11726_ctss_rev Cl:NEC8- bigWig testicular germ cell embryonal carcinoma cell line:NEC8_CNhs11726_10590-108D5_reverse 0 1698 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10590-108D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC8.CNhs11726.10590-108D5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel testicular germ cell embryonal carcinoma cell line:NEC8_CNhs11726_10590-108D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10590-108D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NEC8-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC8_CNhs11726_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10590-108D5\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineNEC8_CNhs11726_tpm_rev Cl:NEC8- bigWig testicular germ cell embryonal carcinoma cell line:NEC8_CNhs11726_10590-108D5_reverse 1 1698 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10590-108D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC8.CNhs11726.10590-108D5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel testicular germ cell embryonal carcinoma cell line:NEC8_CNhs11726_10590-108D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10590-108D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NEC8-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC8_CNhs11726_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10590-108D5\ urlLabel FANTOM5 Details:\ NeuroblastomaCellLineNH12_CNhs11811_ctss_fwd Cl:NH-12+ bigWig neuroblastoma cell line:NH-12_CNhs11811_10555-107I6_forward 0 1699 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10555-107I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neuroblastoma%20cell%20line%3aNH-12.CNhs11811.10555-107I6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel neuroblastoma cell 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NeuroblastomaCellLineNH12_CNhs11811_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10555-107I6\ urlLabel FANTOM5 Details:\ NeuroblastomaCellLineNH12_CNhs11811_ctss_rev Cl:NH-12- bigWig neuroblastoma cell line:NH-12_CNhs11811_10555-107I6_reverse 0 1700 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10555-107I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neuroblastoma%20cell%20line%3aNH-12.CNhs11811.10555-107I6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel neuroblastoma cell line:NH-12_CNhs11811_10555-107I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10555-107I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NH-12-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroblastomaCellLineNH12_CNhs11811_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10555-107I6\ urlLabel FANTOM5 Details:\ NeuroblastomaCellLineNH12_CNhs11811_tpm_rev Cl:NH-12- bigWig neuroblastoma cell line:NH-12_CNhs11811_10555-107I6_reverse 1 1700 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10555-107I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neuroblastoma%20cell%20line%3aNH-12.CNhs11811.10555-107I6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel neuroblastoma cell line:NH-12_CNhs11811_10555-107I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10555-107I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NH-12-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroblastomaCellLineNH12_CNhs11811_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10555-107I6\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM2CellLineNKM1_CNhs11864_ctss_fwd Cl:NKM-1+ bigWig acute myeloid leukemia (FAB M2) cell line:NKM-1_CNhs11864_10765-110E9_forward 0 1701 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10765-110E9 regulation 0 bigDataUrl 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urlLabel FANTOM5 Details:\ LargeCellNonkeratinizingSquamousCarcinomaCellLineSKGIISF_CNhs11825_tpm_fwd Cl:SKG-II-SF+ bigWig large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF_CNhs11825_10692-109F8_forward 1 1759 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10692-109F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/large%20cell%20non-keratinizing%20squamous%20carcinoma%20cell%20line%3aSKG-II-SF.CNhs11825.10692-109F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF_CNhs11825_10692-109F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10692-109F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SKG-II-SF+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LargeCellNonkeratinizingSquamousCarcinomaCellLineSKGIISF_CNhs11825_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10692-109F8\ urlLabel FANTOM5 Details:\ 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ChronicLymphocyticLeukemiaTCLLCellLineSKW3_CNhs11714_ctss_rev Cl:SKW-3- bigWig chronic lymphocytic leukemia (T-CLL) cell line:SKW-3_CNhs11714_10416-106C2_reverse 0 1764 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10416-106C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/chronic%20lymphocytic%20leukemia%20%28T-CLL%29%20cell%20line%3aSKW-3.CNhs11714.10416-106C2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel chronic lymphocytic leukemia (T-CLL) cell line:SKW-3_CNhs11714_10416-106C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10416-106C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SKW-3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicLymphocyticLeukemiaTCLLCellLineSKW3_CNhs11714_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10416-106C2\ urlLabel FANTOM5 Details:\ ChronicLymphocyticLeukemiaTCLLCellLineSKW3_CNhs11714_tpm_rev Cl:SKW-3- bigWig chronic lymphocytic leukemia (T-CLL) cell 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subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track BasophilsDonor2_CNhs12563_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1\ urlLabel FANTOM5 Details:\ BasophilsDonor2_CNhs12563_tpm_fwd BasophilsD2+ bigWig Basophils, donor2_CNhs12563_12242-129H1_forward 1 1893 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Basophils%2c%20donor2.CNhs12563.12242-129H1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Basophils, donor2_CNhs12563_12242-129H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12242-129H1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel BasophilsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track BasophilsDonor2_CNhs12563_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1\ urlLabel FANTOM5 Details:\ BasophilsDonor2_CNhs12563_ctss_rev BasophilsD2- bigWig Basophils, donor2_CNhs12563_12242-129H1_reverse 0 1894 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Basophils%2c%20donor2.CNhs12563.12242-129H1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Basophils, donor2_CNhs12563_12242-129H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12242-129H1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel BasophilsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track BasophilsDonor2_CNhs12563_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1\ urlLabel FANTOM5 Details:\ BasophilsDonor2_CNhs12563_tpm_rev BasophilsD2- bigWig Basophils, donor2_CNhs12563_12242-129H1_reverse 1 1894 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Basophils%2c%20donor2.CNhs12563.12242-129H1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Basophils, donor2_CNhs12563_12242-129H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12242-129H1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel BasophilsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track BasophilsDonor2_CNhs12563_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1\ urlLabel FANTOM5 Details:\ CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_ctss_fwd Cd133+StemCellsAdultBoneMarrowPl1+ bigWig CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_forward 0 1895 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD133%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20pool1.CNhs12552.12224-129F1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12224-129F1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd133+StemCellsAdultBoneMarrowPl1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1\ urlLabel FANTOM5 Details:\ CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_tpm_fwd Cd133+StemCellsAdultBoneMarrowPl1+ bigWig CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_forward 1 1895 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD133%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20pool1.CNhs12552.12224-129F1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12224-129F1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd133+StemCellsAdultBoneMarrowPl1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1\ urlLabel FANTOM5 Details:\ CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_ctss_rev Cd133+StemCellsAdultBoneMarrowPl1- bigWig CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_reverse 0 1896 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD133%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20pool1.CNhs12552.12224-129F1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12224-129F1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd133+StemCellsAdultBoneMarrowPl1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1\ urlLabel FANTOM5 Details:\ CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_tpm_rev Cd133+StemCellsAdultBoneMarrowPl1- bigWig CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_reverse 1 1896 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD133%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20pool1.CNhs12552.12224-129F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12224-129F1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd133+StemCellsAdultBoneMarrowPl1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1\ urlLabel FANTOM5 Details:\ CD133StemCellsCordBloodDerivedPool1_CNhs12545_ctss_fwd Cd133+StemCellsCordBloodPl1+ bigWig CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_forward 0 1897 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD133%2b%20stem%20cells%20-%20cord%20blood%20derived%2c%20pool1.CNhs12545.12223-129E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12223-129E9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd133+StemCellsCordBloodPl1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD133StemCellsCordBloodDerivedPool1_CNhs12545_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9\ urlLabel FANTOM5 Details:\ CD133StemCellsCordBloodDerivedPool1_CNhs12545_tpm_fwd Cd133+StemCellsCordBloodPl1+ bigWig CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_forward 1 1897 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD133%2b%20stem%20cells%20-%20cord%20blood%20derived%2c%20pool1.CNhs12545.12223-129E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12223-129E9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd133+StemCellsCordBloodPl1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD133StemCellsCordBloodDerivedPool1_CNhs12545_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9\ urlLabel FANTOM5 Details:\ CD133StemCellsCordBloodDerivedPool1_CNhs12545_ctss_rev Cd133+StemCellsCordBloodPl1- bigWig CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_reverse 0 1898 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD133%2b%20stem%20cells%20-%20cord%20blood%20derived%2c%20pool1.CNhs12545.12223-129E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12223-129E9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd133+StemCellsCordBloodPl1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD133StemCellsCordBloodDerivedPool1_CNhs12545_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9\ urlLabel FANTOM5 Details:\ CD133StemCellsCordBloodDerivedPool1_CNhs12545_tpm_rev Cd133+StemCellsCordBloodPl1- bigWig CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_reverse 1 1898 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD133%2b%20stem%20cells%20-%20cord%20blood%20derived%2c%20pool1.CNhs12545.12223-129E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12223-129E9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd133+StemCellsCordBloodPl1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD133StemCellsCordBloodDerivedPool1_CNhs12545_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13229_ctss_fwd Cd14-cd16+MonocytesD1+ bigWig CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_forward 0 1899 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor1.CNhs13229.11790-124B8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11790-124B8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor1_CNhs13229_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13229_tpm_fwd Cd14-cd16+MonocytesD1+ bigWig CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_forward 1 1899 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor1.CNhs13229.11790-124B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11790-124B8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor1_CNhs13229_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13229_ctss_rev Cd14-cd16+MonocytesD1- bigWig CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_reverse 0 1900 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor1.CNhs13229.11790-124B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11790-124B8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor1_CNhs13229_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13229_tpm_rev Cd14-cd16+MonocytesD1- bigWig CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_reverse 1 1900 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor1.CNhs13229.11790-124B8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11790-124B8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor1_CNhs13229_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation1_CNhs12177_ctss_fwd Cd19+BCellsPluriD090309Dn1+ bigWig CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_forward 0 1901 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12177.12189-129B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12189-129B2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090309Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090309Donation1_CNhs12177_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation1_CNhs12177_tpm_fwd Cd19+BCellsPluriD090309Dn1+ bigWig CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_forward 1 1901 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12177.12189-129B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12189-129B2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090309Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090309Donation1_CNhs12177_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation1_CNhs12177_ctss_rev Cd19+BCellsPluriD090309Dn1- bigWig CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_reverse 0 1902 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12177.12189-129B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12189-129B2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090309Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090309Donation1_CNhs12177_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation1_CNhs12177_tpm_rev Cd19+BCellsPluriD090309Dn1- bigWig CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_reverse 1 1902 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12177.12189-129B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12189-129B2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090309Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090309Donation1_CNhs12177_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation2_CNhs12179_ctss_fwd Cd19+BCellsPluriD090309Dn2+ bigWig CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_forward 0 1903 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12179.12194-129B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12194-129B7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090309Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090309Donation2_CNhs12179_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation2_CNhs12179_tpm_fwd Cd19+BCellsPluriD090309Dn2+ bigWig CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_forward 1 1903 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12179.12194-129B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12194-129B7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090309Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090309Donation2_CNhs12179_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation2_CNhs12179_ctss_rev Cd19+BCellsPluriD090309Dn2- bigWig CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_reverse 0 1904 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12179.12194-129B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12194-129B7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090309Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090309Donation2_CNhs12179_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation2_CNhs12179_tpm_rev Cd19+BCellsPluriD090309Dn2- bigWig CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_reverse 1 1904 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12179.12194-129B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12194-129B7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090309Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090309Donation2_CNhs12179_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation3_CNhs12181_ctss_fwd Cd19+BCellsPluriD090309Dn3+ bigWig CD19+ B Cells (pluriselect), donor090309, donation3_CNhs12181_12199-129C3_forward 0 1905 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12199-129C3 regulation 0 bigDataUrl 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/gbdb/hg19/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12175.12174-128I5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090325, donation2_CNhs12175_12174-128I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12174-128I5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090325Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090325Donation2_CNhs12175_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12174-128I5\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation1_CNhs12183_ctss_fwd Cd19+BCellsPluriD090612Dn1+ bigWig CD19+ B Cells (pluriselect), donor090612, donation1_CNhs12183_12204-129C8_forward 0 1911 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12204-129C8 regulation 0 bigDataUrl 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/gbdb/hg19/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12185.12209-129D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12209-129D4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090612Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090612Donation2_CNhs12185_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation2_CNhs12185_tpm_rev Cd19+BCellsPluriD090612Dn2- bigWig CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_reverse 1 1914 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12185.12209-129D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12209-129D4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090612Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090612Donation2_CNhs12185_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation3_CNhs12188_ctss_fwd Cd19+BCellsPluriD090612Dn3+ bigWig CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_forward 0 1915 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12188.12214-129D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12214-129D9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090612Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090612Donation3_CNhs12188_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation3_CNhs12188_tpm_fwd Cd19+BCellsPluriD090612Dn3+ bigWig CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_forward 1 1915 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12188.12214-129D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12214-129D9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090612Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090612Donation3_CNhs12188_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation3_CNhs12188_ctss_rev Cd19+BCellsPluriD090612Dn3- bigWig CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_reverse 0 1916 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12188.12214-129D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12214-129D9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090612Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090612Donation3_CNhs12188_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation3_CNhs12188_tpm_rev Cd19+BCellsPluriD090612Dn3- bigWig CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_reverse 1 1916 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12188.12214-129D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12214-129D9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090612Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090612Donation3_CNhs12188_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor1_CNhs13227_ctss_fwd Cd34+ProgenitorsD1+ bigWig CD34+ Progenitors, donor1_CNhs13227_11545-120B6_forward 0 1917 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%2b%20Progenitors%2c%20donor1.CNhs13227.11545-120B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD34+ Progenitors, donor1_CNhs13227_11545-120B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11545-120B6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+ProgenitorsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34ProgenitorsDonor1_CNhs13227_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor1_CNhs13227_tpm_fwd Cd34+ProgenitorsD1+ bigWig CD34+ Progenitors, donor1_CNhs13227_11545-120B6_forward 1 1917 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%2b%20Progenitors%2c%20donor1.CNhs13227.11545-120B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD34+ Progenitors, donor1_CNhs13227_11545-120B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11545-120B6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+ProgenitorsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34ProgenitorsDonor1_CNhs13227_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor1_CNhs13227_ctss_rev Cd34+ProgenitorsD1- bigWig CD34+ Progenitors, donor1_CNhs13227_11545-120B6_reverse 0 1918 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%2b%20Progenitors%2c%20donor1.CNhs13227.11545-120B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD34+ Progenitors, donor1_CNhs13227_11545-120B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11545-120B6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+ProgenitorsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34ProgenitorsDonor1_CNhs13227_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor1_CNhs13227_tpm_rev Cd34+ProgenitorsD1- bigWig CD34+ Progenitors, donor1_CNhs13227_11545-120B6_reverse 1 1918 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%2b%20Progenitors%2c%20donor1.CNhs13227.11545-120B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD34+ Progenitors, donor1_CNhs13227_11545-120B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11545-120B6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+ProgenitorsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34ProgenitorsDonor1_CNhs13227_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor2_CNhs12205_ctss_fwd Cd34+ProgenitorsD2+ bigWig CD34+ Progenitors, donor2_CNhs12205_11625-122B5_forward 0 1919 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%2b%20Progenitors%2c%20donor2.CNhs12205.11625-122B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD34+ Progenitors, donor2_CNhs12205_11625-122B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11625-122B5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+ProgenitorsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34ProgenitorsDonor2_CNhs12205_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor2_CNhs12205_tpm_fwd Cd34+ProgenitorsD2+ bigWig CD34+ Progenitors, donor2_CNhs12205_11625-122B5_forward 1 1919 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%2b%20Progenitors%2c%20donor2.CNhs12205.11625-122B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD34+ Progenitors, donor2_CNhs12205_11625-122B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11625-122B5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+ProgenitorsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34ProgenitorsDonor2_CNhs12205_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor2_CNhs12205_ctss_rev Cd34+ProgenitorsD2- bigWig CD34+ Progenitors, donor2_CNhs12205_11625-122B5_reverse 0 1920 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%2b%20Progenitors%2c%20donor2.CNhs12205.11625-122B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD34+ Progenitors, donor2_CNhs12205_11625-122B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11625-122B5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+ProgenitorsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34ProgenitorsDonor2_CNhs12205_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor2_CNhs12205_tpm_rev Cd34+ProgenitorsD2- bigWig CD34+ Progenitors, donor2_CNhs12205_11625-122B5_reverse 1 1920 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%2b%20Progenitors%2c%20donor2.CNhs12205.11625-122B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD34+ Progenitors, donor2_CNhs12205_11625-122B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11625-122B5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+ProgenitorsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34ProgenitorsDonor2_CNhs12205_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_ctss_fwd Cd34+StemCellsAdultBoneMarrowD1Tr2+ bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_forward 0 1921 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep2.CNhs12553.12225-129F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_tpm_fwd Cd34+StemCellsAdultBoneMarrowD1Tr2+ bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_forward 1 1921 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep2.CNhs12553.12225-129F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_ctss_rev Cd34+StemCellsAdultBoneMarrowD1Tr2- bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_reverse 0 1922 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep2.CNhs12553.12225-129F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_tpm_rev Cd34+StemCellsAdultBoneMarrowD1Tr2- bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_reverse 1 1922 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep2.CNhs12553.12225-129F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_ctss_fwd Cd4+cd25+cd45ra+D1+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_forward 0 1923 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor1.CNhs13238.11780-124A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11780-124A7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_tpm_fwd Cd4+cd25+cd45ra+D1+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_forward 1 1923 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor1.CNhs13238.11780-124A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11780-124A7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_ctss_rev Cd4+cd25+cd45ra+D1- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_reverse 0 1924 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor1.CNhs13238.11780-124A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11780-124A7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_tpm_rev Cd4+cd25+cd45ra+D1- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_reverse 1 1924 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor1.CNhs13238.11780-124A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11780-124A7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_ctss_fwd Cd4+cd25+cd45ra+D2+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_forward 0 1925 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor2.CNhs13235.11796-124C5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11796-124C5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_tpm_fwd Cd4+cd25+cd45ra+D2+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_forward 1 1925 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor2.CNhs13235.11796-124C5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11796-124C5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_ctss_rev Cd4+cd25+cd45ra+D2- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_reverse 0 1926 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor2.CNhs13235.11796-124C5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11796-124C5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_tpm_rev Cd4+cd25+cd45ra+D2- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_reverse 1 1926 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor2.CNhs13235.11796-124C5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11796-124C5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_ctss_fwd Cd4+cd25-cd45ra-D1+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_forward 0 1927 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor1.CNhs13239.11786-124B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11786-124B4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_tpm_fwd Cd4+cd25-cd45ra-D1+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_forward 1 1927 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor1.CNhs13239.11786-124B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11786-124B4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_ctss_rev Cd4+cd25-cd45ra-D1- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_reverse 0 1928 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor1.CNhs13239.11786-124B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11786-124B4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_tpm_rev Cd4+cd25-cd45ra-D1- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_reverse 1 1928 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor1.CNhs13239.11786-124B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11786-124B4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_ctss_fwd Cd4+cd25-cd45ra-D2+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_forward 0 1929 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor2.CNhs13237.11798-124C7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11798-124C7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_tpm_fwd Cd4+cd25-cd45ra-D2+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_forward 1 1929 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor2.CNhs13237.11798-124C7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11798-124C7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_ctss_rev Cd4+cd25-cd45ra-D2- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_reverse 0 1930 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor2.CNhs13237.11798-124C7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11798-124C7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_tpm_rev Cd4+cd25-cd45ra-D2- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_reverse 1 1930 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor2.CNhs13237.11798-124C7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11798-124C7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation1_CNhs12176_ctss_fwd Cd8+TCellsPluriD090309Dn1+ bigWig CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_forward 0 1931 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12176.12186-129A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12186-129A8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation1_CNhs12176_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation1_CNhs12176_tpm_fwd Cd8+TCellsPluriD090309Dn1+ bigWig CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_forward 1 1931 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12176.12186-129A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12186-129A8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation1_CNhs12176_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation1_CNhs12176_ctss_rev Cd8+TCellsPluriD090309Dn1- bigWig CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_reverse 0 1932 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12176.12186-129A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12186-129A8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation1_CNhs12176_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation1_CNhs12176_tpm_rev Cd8+TCellsPluriD090309Dn1- bigWig CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_reverse 1 1932 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12176.12186-129A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12186-129A8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation1_CNhs12176_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation2_CNhs12178_ctss_fwd Cd8+TCellsPluriD090309Dn2+ bigWig CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_forward 0 1933 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12178.12191-129B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12191-129B4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation2_CNhs12178_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation2_CNhs12178_tpm_fwd Cd8+TCellsPluriD090309Dn2+ bigWig CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_forward 1 1933 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12178.12191-129B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12191-129B4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation2_CNhs12178_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation2_CNhs12178_ctss_rev Cd8+TCellsPluriD090309Dn2- bigWig CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_reverse 0 1934 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12178.12191-129B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12191-129B4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation2_CNhs12178_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation2_CNhs12178_tpm_rev Cd8+TCellsPluriD090309Dn2- bigWig CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_reverse 1 1934 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12178.12191-129B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12191-129B4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation2_CNhs12178_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation3_CNhs12180_ctss_fwd Cd8+TCellsPluriD090309Dn3+ bigWig CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_forward 0 1935 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12180.12196-129B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12196-129B9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation3_CNhs12180_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation3_CNhs12180_tpm_fwd Cd8+TCellsPluriD090309Dn3+ bigWig CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_forward 1 1935 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12180.12196-129B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12196-129B9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation3_CNhs12180_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation3_CNhs12180_ctss_rev Cd8+TCellsPluriD090309Dn3- bigWig CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_reverse 0 1936 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12180.12196-129B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12196-129B9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation3_CNhs12180_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation3_CNhs12180_tpm_rev Cd8+TCellsPluriD090309Dn3- bigWig CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_reverse 1 1936 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12180.12196-129B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12196-129B9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation3_CNhs12180_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation1_CNhs12201_ctss_fwd Cd8+TCellsPluriD090325Dn1+ bigWig CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_forward 0 1937 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12201.12148-128F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12148-128F6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090325Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090325Donation1_CNhs12201_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation1_CNhs12201_tpm_fwd Cd8+TCellsPluriD090325Dn1+ bigWig CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_forward 1 1937 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12201.12148-128F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12148-128F6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090325Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090325Donation1_CNhs12201_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation1_CNhs12201_ctss_rev Cd8+TCellsPluriD090325Dn1- bigWig CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_reverse 0 1938 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12201.12148-128F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12148-128F6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090325Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090325Donation1_CNhs12201_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation1_CNhs12201_tpm_rev Cd8+TCellsPluriD090325Dn1- bigWig CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_reverse 1 1938 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12201.12148-128F6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12148-128F6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090325Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090325Donation1_CNhs12201_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation2_CNhs12199_ctss_fwd Cd8+TCellsPluriD090325Dn2+ bigWig CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_forward 0 1939 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12199.12171-128I2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12171-128I2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090325Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090325Donation2_CNhs12199_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation2_CNhs12199_tpm_fwd Cd8+TCellsPluriD090325Dn2+ bigWig CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_forward 1 1939 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12199.12171-128I2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12171-128I2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090325Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090325Donation2_CNhs12199_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation2_CNhs12199_ctss_rev Cd8+TCellsPluriD090325Dn2- bigWig CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_reverse 0 1940 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12199.12171-128I2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12171-128I2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090325Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090325Donation2_CNhs12199_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation2_CNhs12199_tpm_rev Cd8+TCellsPluriD090325Dn2- bigWig CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_reverse 1 1940 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12199.12171-128I2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12171-128I2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090325Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090325Donation2_CNhs12199_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation1_CNhs12182_ctss_fwd Cd8+TCellsPluriD090612Dn1+ bigWig CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_forward 0 1941 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12182.12201-129C5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12201-129C5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation1_CNhs12182_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation1_CNhs12182_tpm_fwd Cd8+TCellsPluriD090612Dn1+ bigWig CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_forward 1 1941 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12182.12201-129C5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12201-129C5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation1_CNhs12182_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation1_CNhs12182_ctss_rev Cd8+TCellsPluriD090612Dn1- bigWig CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_reverse 0 1942 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12182.12201-129C5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12201-129C5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation1_CNhs12182_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation1_CNhs12182_tpm_rev Cd8+TCellsPluriD090612Dn1- bigWig CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_reverse 1 1942 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12182.12201-129C5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12201-129C5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation1_CNhs12182_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation2_CNhs12184_ctss_fwd Cd8+TCellsPluriD090612Dn2+ bigWig CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_forward 0 1943 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12184.12206-129D1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12206-129D1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation2_CNhs12184_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation2_CNhs12184_tpm_fwd Cd8+TCellsPluriD090612Dn2+ bigWig CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_forward 1 1943 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12184.12206-129D1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12206-129D1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation2_CNhs12184_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation2_CNhs12184_ctss_rev Cd8+TCellsPluriD090612Dn2- bigWig CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_reverse 0 1944 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12184.12206-129D1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12206-129D1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation2_CNhs12184_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation2_CNhs12184_tpm_rev Cd8+TCellsPluriD090612Dn2- bigWig CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_reverse 1 1944 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12184.12206-129D1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12206-129D1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation2_CNhs12184_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation3_CNhs12187_ctss_fwd Cd8+TCellsPluriD090612Dn3+ bigWig CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_forward 0 1945 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12187.12211-129D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12211-129D6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation3_CNhs12187_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation3_CNhs12187_tpm_fwd Cd8+TCellsPluriD090612Dn3+ bigWig CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_forward 1 1945 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12187.12211-129D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12211-129D6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation3_CNhs12187_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation3_CNhs12187_ctss_rev Cd8+TCellsPluriD090612Dn3- bigWig CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_reverse 0 1946 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12187.12211-129D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12211-129D6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation3_CNhs12187_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation3_CNhs12187_tpm_rev Cd8+TCellsPluriD090612Dn3- bigWig CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_reverse 1 1946 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12187.12211-129D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12211-129D6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation3_CNhs12187_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor1_CNhs12518_ctss_fwd CommonMyeloidProgenitorCmpD1+ bigWig common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_forward 0 1947 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor1.CNhs12518.12130-128D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12130-128D6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel CommonMyeloidProgenitorCmpD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CommonMyeloidProgenitorCMPDonor1_CNhs12518_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor1_CNhs12518_tpm_fwd CommonMyeloidProgenitorCmpD1+ bigWig common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_forward 1 1947 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor1.CNhs12518.12130-128D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12130-128D6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel CommonMyeloidProgenitorCmpD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CommonMyeloidProgenitorCMPDonor1_CNhs12518_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor1_CNhs12518_ctss_rev CommonMyeloidProgenitorCmpD1- bigWig common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_reverse 0 1948 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor1.CNhs12518.12130-128D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12130-128D6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel CommonMyeloidProgenitorCmpD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CommonMyeloidProgenitorCMPDonor1_CNhs12518_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor1_CNhs12518_tpm_rev CommonMyeloidProgenitorCmpD1- bigWig common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_reverse 1 1948 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor1.CNhs12518.12130-128D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12130-128D6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel CommonMyeloidProgenitorCmpD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CommonMyeloidProgenitorCMPDonor1_CNhs12518_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor2_CNhs12523_ctss_fwd CommonMyeloidProgenitorCmpD2+ bigWig common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_forward 0 1949 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor2.CNhs12523.12134-128E1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12134-128E1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel CommonMyeloidProgenitorCmpD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CommonMyeloidProgenitorCMPDonor2_CNhs12523_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor2_CNhs12523_tpm_fwd CommonMyeloidProgenitorCmpD2+ bigWig common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_forward 1 1949 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor2.CNhs12523.12134-128E1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12134-128E1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel CommonMyeloidProgenitorCmpD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CommonMyeloidProgenitorCMPDonor2_CNhs12523_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor2_CNhs12523_ctss_rev CommonMyeloidProgenitorCmpD2- bigWig common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_reverse 0 1950 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor2.CNhs12523.12134-128E1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12134-128E1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel CommonMyeloidProgenitorCmpD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CommonMyeloidProgenitorCMPDonor2_CNhs12523_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor2_CNhs12523_tpm_rev CommonMyeloidProgenitorCmpD2- bigWig common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_reverse 1 1950 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor2.CNhs12523.12134-128E1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12134-128E1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel CommonMyeloidProgenitorCmpD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CommonMyeloidProgenitorCMPDonor2_CNhs12523_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1\ urlLabel FANTOM5 Details:\ DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_ctss_fwd DendriticCellsMonocyteImmatureD2+ bigWig Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_forward 0 1951 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor2.CNhs12195.11308-117C3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11308-117C3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsMonocyteImmatureD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3\ urlLabel FANTOM5 Details:\ DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_tpm_fwd DendriticCellsMonocyteImmatureD2+ bigWig Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_forward 1 1951 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor2.CNhs12195.11308-117C3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11308-117C3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsMonocyteImmatureD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3\ urlLabel FANTOM5 Details:\ DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_ctss_rev DendriticCellsMonocyteImmatureD2- bigWig Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_reverse 0 1952 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor2.CNhs12195.11308-117C3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11308-117C3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsMonocyteImmatureD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3\ urlLabel FANTOM5 Details:\ DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_tpm_rev DendriticCellsMonocyteImmatureD2- bigWig Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_reverse 1 1952 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor2.CNhs12195.11308-117C3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11308-117C3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsMonocyteImmatureD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor2_CNhs12196_ctss_fwd DendriticCellsPlasmacytoidD2+ bigWig Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_forward 0 1953 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor2.CNhs12196.11309-117C4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11309-117C4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsPlasmacytoidD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsPlasmacytoidDonor2_CNhs12196_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor2_CNhs12196_tpm_fwd DendriticCellsPlasmacytoidD2+ bigWig Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_forward 1 1953 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor2.CNhs12196.11309-117C4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11309-117C4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsPlasmacytoidD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsPlasmacytoidDonor2_CNhs12196_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor2_CNhs12196_ctss_rev DendriticCellsPlasmacytoidD2- bigWig Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_reverse 0 1954 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor2.CNhs12196.11309-117C4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11309-117C4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsPlasmacytoidD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsPlasmacytoidDonor2_CNhs12196_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor2_CNhs12196_tpm_rev DendriticCellsPlasmacytoidD2- bigWig Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_reverse 1 1954 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor2.CNhs12196.11309-117C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11309-117C4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsPlasmacytoidD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsPlasmacytoidDonor2_CNhs12196_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor3_CNhs12200_ctss_fwd DendriticCellsPlasmacytoidD3+ bigWig Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_forward 0 1955 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor3.CNhs12200.11385-118B8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11385-118B8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsPlasmacytoidD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsPlasmacytoidDonor3_CNhs12200_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor3_CNhs12200_tpm_fwd DendriticCellsPlasmacytoidD3+ bigWig Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_forward 1 1955 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor3.CNhs12200.11385-118B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11385-118B8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsPlasmacytoidD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsPlasmacytoidDonor3_CNhs12200_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor3_CNhs12200_ctss_rev DendriticCellsPlasmacytoidD3- bigWig Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_reverse 0 1956 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor3.CNhs12200.11385-118B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11385-118B8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsPlasmacytoidD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsPlasmacytoidDonor3_CNhs12200_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor3_CNhs12200_tpm_rev DendriticCellsPlasmacytoidD3- bigWig Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_reverse 1 1956 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor3.CNhs12200.11385-118B8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11385-118B8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsPlasmacytoidD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsPlasmacytoidDonor3_CNhs12200_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8\ urlLabel FANTOM5 Details:\ EosinophilsDonor1_CNhs12547_ctss_fwd EosinophilsD1+ bigWig Eosinophils, donor1_CNhs12547_12244-129H3_forward 0 1957 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Eosinophils%2c%20donor1.CNhs12547.12244-129H3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor1_CNhs12547_12244-129H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12244-129H3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel EosinophilsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track EosinophilsDonor1_CNhs12547_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3\ urlLabel FANTOM5 Details:\ EosinophilsDonor1_CNhs12547_tpm_fwd EosinophilsD1+ bigWig Eosinophils, donor1_CNhs12547_12244-129H3_forward 1 1957 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Eosinophils%2c%20donor1.CNhs12547.12244-129H3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor1_CNhs12547_12244-129H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12244-129H3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel EosinophilsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track EosinophilsDonor1_CNhs12547_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3\ urlLabel FANTOM5 Details:\ EosinophilsDonor1_CNhs12547_ctss_rev EosinophilsD1- bigWig Eosinophils, donor1_CNhs12547_12244-129H3_reverse 0 1958 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Eosinophils%2c%20donor1.CNhs12547.12244-129H3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Eosinophils, donor1_CNhs12547_12244-129H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12244-129H3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel EosinophilsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track EosinophilsDonor1_CNhs12547_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3\ urlLabel FANTOM5 Details:\ EosinophilsDonor1_CNhs12547_tpm_rev EosinophilsD1- bigWig Eosinophils, donor1_CNhs12547_12244-129H3_reverse 1 1958 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Eosinophils%2c%20donor1.CNhs12547.12244-129H3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Eosinophils, donor1_CNhs12547_12244-129H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12244-129H3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel EosinophilsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track EosinophilsDonor1_CNhs12547_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3\ urlLabel FANTOM5 Details:\ EosinophilsDonor2_CNhs12548_ctss_fwd EosinophilsD2+ bigWig Eosinophils, donor2_CNhs12548_12245-129H4_forward 0 1959 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Eosinophils%2c%20donor2.CNhs12548.12245-129H4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor2_CNhs12548_12245-129H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12245-129H4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel EosinophilsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track EosinophilsDonor2_CNhs12548_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4\ urlLabel FANTOM5 Details:\ EosinophilsDonor2_CNhs12548_tpm_fwd EosinophilsD2+ bigWig Eosinophils, donor2_CNhs12548_12245-129H4_forward 1 1959 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Eosinophils%2c%20donor2.CNhs12548.12245-129H4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor2_CNhs12548_12245-129H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12245-129H4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel EosinophilsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track EosinophilsDonor2_CNhs12548_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4\ urlLabel FANTOM5 Details:\ EosinophilsDonor2_CNhs12548_ctss_rev EosinophilsD2- bigWig Eosinophils, donor2_CNhs12548_12245-129H4_reverse 0 1960 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Eosinophils%2c%20donor2.CNhs12548.12245-129H4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Eosinophils, donor2_CNhs12548_12245-129H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12245-129H4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel EosinophilsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track EosinophilsDonor2_CNhs12548_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4\ urlLabel FANTOM5 Details:\ EosinophilsDonor2_CNhs12548_tpm_rev EosinophilsD2- bigWig Eosinophils, donor2_CNhs12548_12245-129H4_reverse 1 1960 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Eosinophils%2c%20donor2.CNhs12548.12245-129H4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Eosinophils, donor2_CNhs12548_12245-129H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12245-129H4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel EosinophilsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track EosinophilsDonor2_CNhs12548_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4\ urlLabel FANTOM5 Details:\ EosinophilsDonor3_CNhs12549_ctss_fwd EosinophilsD3+ bigWig Eosinophils, donor3_CNhs12549_12246-129H5_forward 0 1961 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Eosinophils%2c%20donor3.CNhs12549.12246-129H5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor3_CNhs12549_12246-129H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12246-129H5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel EosinophilsD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track EosinophilsDonor3_CNhs12549_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5\ urlLabel FANTOM5 Details:\ EosinophilsDonor3_CNhs12549_tpm_fwd EosinophilsD3+ bigWig Eosinophils, donor3_CNhs12549_12246-129H5_forward 1 1961 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Eosinophils%2c%20donor3.CNhs12549.12246-129H5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor3_CNhs12549_12246-129H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12246-129H5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel EosinophilsD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track EosinophilsDonor3_CNhs12549_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5\ urlLabel FANTOM5 Details:\ EosinophilsDonor3_CNhs12549_ctss_rev EosinophilsD3- bigWig Eosinophils, donor3_CNhs12549_12246-129H5_reverse 0 1962 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Eosinophils%2c%20donor3.CNhs12549.12246-129H5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Eosinophils, donor3_CNhs12549_12246-129H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12246-129H5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel EosinophilsD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track EosinophilsDonor3_CNhs12549_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5\ urlLabel FANTOM5 Details:\ EosinophilsDonor3_CNhs12549_tpm_rev EosinophilsD3- bigWig Eosinophils, donor3_CNhs12549_12246-129H5_reverse 1 1962 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Eosinophils%2c%20donor3.CNhs12549.12246-129H5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Eosinophils, donor3_CNhs12549_12246-129H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12246-129H5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel EosinophilsD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track EosinophilsDonor3_CNhs12549_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor1_CNhs12519_ctss_fwd GranulocyteMacrophageProgenitorD1+ bigWig granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_forward 0 1963 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor1.CNhs12519.12131-128D7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12131-128D7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel GranulocyteMacrophageProgenitorD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track GranulocyteMacrophageProgenitorDonor1_CNhs12519_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor1_CNhs12519_tpm_fwd GranulocyteMacrophageProgenitorD1+ bigWig granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_forward 1 1963 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor1.CNhs12519.12131-128D7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12131-128D7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel GranulocyteMacrophageProgenitorD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track GranulocyteMacrophageProgenitorDonor1_CNhs12519_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor1_CNhs12519_ctss_rev GranulocyteMacrophageProgenitorD1- bigWig granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_reverse 0 1964 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor1.CNhs12519.12131-128D7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12131-128D7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel GranulocyteMacrophageProgenitorD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track GranulocyteMacrophageProgenitorDonor1_CNhs12519_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor1_CNhs12519_tpm_rev GranulocyteMacrophageProgenitorD1- bigWig granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_reverse 1 1964 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor1.CNhs12519.12131-128D7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12131-128D7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel GranulocyteMacrophageProgenitorD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track GranulocyteMacrophageProgenitorDonor1_CNhs12519_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor2_CNhs12524_ctss_fwd GranulocyteMacrophageProgenitorD2+ bigWig granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_forward 0 1965 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor2.CNhs12524.12135-128E2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12135-128E2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel GranulocyteMacrophageProgenitorD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track GranulocyteMacrophageProgenitorDonor2_CNhs12524_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor2_CNhs12524_tpm_fwd GranulocyteMacrophageProgenitorD2+ bigWig granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_forward 1 1965 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor2.CNhs12524.12135-128E2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12135-128E2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel GranulocyteMacrophageProgenitorD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track GranulocyteMacrophageProgenitorDonor2_CNhs12524_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor2_CNhs12524_ctss_rev GranulocyteMacrophageProgenitorD2- bigWig granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_reverse 0 1966 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor2.CNhs12524.12135-128E2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12135-128E2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel GranulocyteMacrophageProgenitorD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track GranulocyteMacrophageProgenitorDonor2_CNhs12524_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor2_CNhs12524_tpm_rev GranulocyteMacrophageProgenitorD2- bigWig granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_reverse 1 1966 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor2.CNhs12524.12135-128E2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12135-128E2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel GranulocyteMacrophageProgenitorD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track GranulocyteMacrophageProgenitorDonor2_CNhs12524_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor3_CNhs12528_ctss_fwd GranulocyteMacrophageProgenitorD3+ bigWig granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_forward 0 1967 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor3.CNhs12528.12139-128E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12139-128E6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel GranulocyteMacrophageProgenitorD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track GranulocyteMacrophageProgenitorDonor3_CNhs12528_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor3_CNhs12528_tpm_fwd GranulocyteMacrophageProgenitorD3+ bigWig granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_forward 1 1967 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor3.CNhs12528.12139-128E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12139-128E6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel GranulocyteMacrophageProgenitorD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track GranulocyteMacrophageProgenitorDonor3_CNhs12528_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor3_CNhs12528_ctss_rev GranulocyteMacrophageProgenitorD3- bigWig granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_reverse 0 1968 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor3.CNhs12528.12139-128E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12139-128E6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel GranulocyteMacrophageProgenitorD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track GranulocyteMacrophageProgenitorDonor3_CNhs12528_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor3_CNhs12528_tpm_rev GranulocyteMacrophageProgenitorD3- bigWig granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_reverse 1 1968 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor3.CNhs12528.12139-128E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12139-128E6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel GranulocyteMacrophageProgenitorD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track GranulocyteMacrophageProgenitorDonor3_CNhs12528_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor1MZH3_CNhs12538_ctss_fwd MallassezCellsD1+ bigWig Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_forward 0 1969 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mallassez-derived%20cells%2c%20donor1%20%28MZH3%29.CNhs12538.12142-128E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12142-128E9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor1MZH3_CNhs12538_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor1MZH3_CNhs12538_tpm_fwd MallassezCellsD1+ bigWig Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_forward 1 1969 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mallassez-derived%20cells%2c%20donor1%20%28MZH3%29.CNhs12538.12142-128E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12142-128E9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor1MZH3_CNhs12538_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor1MZH3_CNhs12538_ctss_rev MallassezCellsD1- bigWig Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_reverse 0 1970 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mallassez-derived%20cells%2c%20donor1%20%28MZH3%29.CNhs12538.12142-128E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12142-128E9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor1MZH3_CNhs12538_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor1MZH3_CNhs12538_tpm_rev MallassezCellsD1- bigWig Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_reverse 1 1970 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mallassez-derived%20cells%2c%20donor1%20%28MZH3%29.CNhs12538.12142-128E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12142-128E9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor1MZH3_CNhs12538_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor1_CNhs12558_ctss_fwd MatureAdipocyteD1+ bigWig mature adipocyte, donor1_CNhs12558_12231-129F8_forward 0 1971 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mature%20adipocyte%2c%20donor1.CNhs12558.12231-129F8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor1_CNhs12558_12231-129F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12231-129F8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor1_CNhs12558_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor1_CNhs12558_tpm_fwd MatureAdipocyteD1+ bigWig mature adipocyte, donor1_CNhs12558_12231-129F8_forward 1 1971 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mature%20adipocyte%2c%20donor1.CNhs12558.12231-129F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor1_CNhs12558_12231-129F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12231-129F8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor1_CNhs12558_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor1_CNhs12558_ctss_rev MatureAdipocyteD1- bigWig mature adipocyte, donor1_CNhs12558_12231-129F8_reverse 0 1972 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mature%20adipocyte%2c%20donor1.CNhs12558.12231-129F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor1_CNhs12558_12231-129F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12231-129F8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor1_CNhs12558_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor1_CNhs12558_tpm_rev MatureAdipocyteD1- bigWig mature adipocyte, donor1_CNhs12558_12231-129F8_reverse 1 1972 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mature%20adipocyte%2c%20donor1.CNhs12558.12231-129F8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor1_CNhs12558_12231-129F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12231-129F8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor1_CNhs12558_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor2_CNhs12559_ctss_fwd MatureAdipocyteD2+ bigWig mature adipocyte, donor2_CNhs12559_12232-129F9_forward 0 1973 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mature%20adipocyte%2c%20donor2.CNhs12559.12232-129F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor2_CNhs12559_12232-129F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12232-129F9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor2_CNhs12559_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor2_CNhs12559_tpm_fwd MatureAdipocyteD2+ bigWig mature adipocyte, donor2_CNhs12559_12232-129F9_forward 1 1973 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mature%20adipocyte%2c%20donor2.CNhs12559.12232-129F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor2_CNhs12559_12232-129F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12232-129F9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor2_CNhs12559_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor2_CNhs12559_ctss_rev MatureAdipocyteD2- bigWig mature adipocyte, donor2_CNhs12559_12232-129F9_reverse 0 1974 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mature%20adipocyte%2c%20donor2.CNhs12559.12232-129F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor2_CNhs12559_12232-129F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12232-129F9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor2_CNhs12559_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor2_CNhs12559_tpm_rev MatureAdipocyteD2- bigWig mature adipocyte, donor2_CNhs12559_12232-129F9_reverse 1 1974 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mature%20adipocyte%2c%20donor2.CNhs12559.12232-129F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor2_CNhs12559_12232-129F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12232-129F9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor2_CNhs12559_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor3_CNhs12560_ctss_fwd MatureAdipocyteD3+ bigWig mature adipocyte, donor3_CNhs12560_12233-129G1_forward 0 1975 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mature%20adipocyte%2c%20donor3.CNhs12560.12233-129G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor3_CNhs12560_12233-129G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12233-129G1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor3_CNhs12560_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor3_CNhs12560_tpm_fwd MatureAdipocyteD3+ bigWig mature adipocyte, donor3_CNhs12560_12233-129G1_forward 1 1975 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mature%20adipocyte%2c%20donor3.CNhs12560.12233-129G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor3_CNhs12560_12233-129G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12233-129G1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor3_CNhs12560_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor3_CNhs12560_ctss_rev MatureAdipocyteD3- bigWig mature adipocyte, donor3_CNhs12560_12233-129G1_reverse 0 1976 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mature%20adipocyte%2c%20donor3.CNhs12560.12233-129G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor3_CNhs12560_12233-129G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12233-129G1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor3_CNhs12560_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor3_CNhs12560_tpm_rev MatureAdipocyteD3- bigWig mature adipocyte, donor3_CNhs12560_12233-129G1_reverse 1 1976 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mature%20adipocyte%2c%20donor3.CNhs12560.12233-129G1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor3_CNhs12560_12233-129G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12233-129G1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor3_CNhs12560_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor4_CNhs12562_ctss_fwd MatureAdipocyteD4+ bigWig mature adipocyte, donor4_CNhs12562_12234-129G2_forward 0 1977 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mature%20adipocyte%2c%20donor4.CNhs12562.12234-129G2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor4_CNhs12562_12234-129G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12234-129G2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD4+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor4_CNhs12562_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor4_CNhs12562_tpm_fwd MatureAdipocyteD4+ bigWig mature adipocyte, donor4_CNhs12562_12234-129G2_forward 1 1977 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mature%20adipocyte%2c%20donor4.CNhs12562.12234-129G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor4_CNhs12562_12234-129G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12234-129G2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD4+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor4_CNhs12562_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor4_CNhs12562_ctss_rev MatureAdipocyteD4- bigWig mature adipocyte, donor4_CNhs12562_12234-129G2_reverse 0 1978 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mature%20adipocyte%2c%20donor4.CNhs12562.12234-129G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor4_CNhs12562_12234-129G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12234-129G2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD4-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor4_CNhs12562_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor4_CNhs12562_tpm_rev MatureAdipocyteD4- bigWig mature adipocyte, donor4_CNhs12562_12234-129G2_reverse 1 1978 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mature%20adipocyte%2c%20donor4.CNhs12562.12234-129G2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor4_CNhs12562_12234-129G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12234-129G2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD4-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor4_CNhs12562_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor2_CNhs12197_ctss_fwd MesothelialCellsD2+ bigWig Mesothelial Cells, donor2_CNhs12197_12156-128G5_forward 0 1979 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesothelial%20Cells%2c%20donor2.CNhs12197.12156-128G5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor2_CNhs12197_12156-128G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12156-128G5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor2_CNhs12197_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor2_CNhs12197_tpm_fwd MesothelialCellsD2+ bigWig Mesothelial Cells, donor2_CNhs12197_12156-128G5_forward 1 1979 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesothelial%20Cells%2c%20donor2.CNhs12197.12156-128G5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor2_CNhs12197_12156-128G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12156-128G5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor2_CNhs12197_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor2_CNhs12197_ctss_rev MesothelialCellsD2- bigWig Mesothelial Cells, donor2_CNhs12197_12156-128G5_reverse 0 1980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesothelial%20Cells%2c%20donor2.CNhs12197.12156-128G5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor2_CNhs12197_12156-128G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12156-128G5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor2_CNhs12197_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor2_CNhs12197_tpm_rev MesothelialCellsD2- bigWig Mesothelial Cells, donor2_CNhs12197_12156-128G5_reverse 1 1980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesothelial%20Cells%2c%20donor2.CNhs12197.12156-128G5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor2_CNhs12197_12156-128G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12156-128G5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor2_CNhs12197_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep2_CNhs12554_ctss_fwd NasalEpithelialCellsD1Tr2+ bigWig nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_forward 0 1981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep2.CNhs12554.12226-129F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD1Tr2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor1TechRep2_CNhs12554_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep2_CNhs12554_tpm_fwd NasalEpithelialCellsD1Tr2+ bigWig nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_forward 1 1981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep2.CNhs12554.12226-129F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD1Tr2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor1TechRep2_CNhs12554_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep2_CNhs12554_ctss_rev NasalEpithelialCellsD1Tr2- bigWig nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_reverse 0 1982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep2.CNhs12554.12226-129F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD1Tr2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor1TechRep2_CNhs12554_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep2_CNhs12554_tpm_rev NasalEpithelialCellsD1Tr2- bigWig nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_reverse 1 1982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep2.CNhs12554.12226-129F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD1Tr2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor1TechRep2_CNhs12554_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor1_CNhs12522_ctss_fwd NeutrophilPmnD1+ bigWig neutrophil PMN, donor1_CNhs12522_12133-128D9_forward 0 1983 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neutrophil%20PMN%2c%20donor1.CNhs12522.12133-128D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor1_CNhs12522_12133-128D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12133-128D9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor1_CNhs12522_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor1_CNhs12522_tpm_fwd NeutrophilPmnD1+ bigWig neutrophil PMN, donor1_CNhs12522_12133-128D9_forward 1 1983 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neutrophil%20PMN%2c%20donor1.CNhs12522.12133-128D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor1_CNhs12522_12133-128D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12133-128D9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor1_CNhs12522_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor1_CNhs12522_ctss_rev NeutrophilPmnD1- bigWig neutrophil PMN, donor1_CNhs12522_12133-128D9_reverse 0 1984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neutrophil%20PMN%2c%20donor1.CNhs12522.12133-128D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor1_CNhs12522_12133-128D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12133-128D9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor1_CNhs12522_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor1_CNhs12522_tpm_rev NeutrophilPmnD1- bigWig neutrophil PMN, donor1_CNhs12522_12133-128D9_reverse 1 1984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neutrophil%20PMN%2c%20donor1.CNhs12522.12133-128D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor1_CNhs12522_12133-128D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12133-128D9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor1_CNhs12522_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor2_CNhs12526_ctss_fwd NeutrophilPmnD2+ bigWig neutrophil PMN, donor2_CNhs12526_12137-128E4_forward 0 1985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neutrophil%20PMN%2c%20donor2.CNhs12526.12137-128E4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor2_CNhs12526_12137-128E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12137-128E4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor2_CNhs12526_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor2_CNhs12526_tpm_fwd NeutrophilPmnD2+ bigWig neutrophil PMN, donor2_CNhs12526_12137-128E4_forward 1 1985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neutrophil%20PMN%2c%20donor2.CNhs12526.12137-128E4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor2_CNhs12526_12137-128E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12137-128E4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor2_CNhs12526_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor2_CNhs12526_ctss_rev NeutrophilPmnD2- bigWig neutrophil PMN, donor2_CNhs12526_12137-128E4_reverse 0 1986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neutrophil%20PMN%2c%20donor2.CNhs12526.12137-128E4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor2_CNhs12526_12137-128E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12137-128E4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor2_CNhs12526_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor2_CNhs12526_tpm_rev NeutrophilPmnD2- bigWig neutrophil PMN, donor2_CNhs12526_12137-128E4_reverse 1 1986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neutrophil%20PMN%2c%20donor2.CNhs12526.12137-128E4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor2_CNhs12526_12137-128E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12137-128E4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor2_CNhs12526_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor3_CNhs12530_ctss_fwd NeutrophilPmnD3+ bigWig neutrophil PMN, donor3_CNhs12530_12141-128E8_forward 0 1987 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neutrophil%20PMN%2c%20donor3.CNhs12530.12141-128E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor3_CNhs12530_12141-128E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12141-128E8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor3_CNhs12530_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor3_CNhs12530_tpm_fwd NeutrophilPmnD3+ bigWig neutrophil PMN, donor3_CNhs12530_12141-128E8_forward 1 1987 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neutrophil%20PMN%2c%20donor3.CNhs12530.12141-128E8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor3_CNhs12530_12141-128E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12141-128E8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor3_CNhs12530_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor3_CNhs12530_ctss_rev NeutrophilPmnD3- bigWig neutrophil PMN, donor3_CNhs12530_12141-128E8_reverse 0 1988 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neutrophil%20PMN%2c%20donor3.CNhs12530.12141-128E8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor3_CNhs12530_12141-128E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12141-128E8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor3_CNhs12530_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor3_CNhs12530_tpm_rev NeutrophilPmnD3- bigWig neutrophil PMN, donor3_CNhs12530_12141-128E8_reverse 1 1988 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/neutrophil%20PMN%2c%20donor3.CNhs12530.12141-128E8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor3_CNhs12530_12141-128E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12141-128E8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor3_CNhs12530_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor1_CNhs12520_ctss_fwd Promyelocytes/myelocytesPmcD1+ bigWig promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_forward 0 1989 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor1.CNhs12520.12132-128D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12132-128D8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor1_CNhs12520_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor1_CNhs12520_tpm_fwd Promyelocytes/myelocytesPmcD1+ bigWig promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_forward 1 1989 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor1.CNhs12520.12132-128D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12132-128D8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor1_CNhs12520_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor1_CNhs12520_ctss_rev Promyelocytes/myelocytesPmcD1- bigWig promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_reverse 0 1990 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor1.CNhs12520.12132-128D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12132-128D8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor1_CNhs12520_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor1_CNhs12520_tpm_rev Promyelocytes/myelocytesPmcD1- bigWig promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_reverse 1 1990 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor1.CNhs12520.12132-128D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12132-128D8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor1_CNhs12520_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor2_CNhs12525_ctss_fwd Promyelocytes/myelocytesPmcD2+ bigWig promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_forward 0 1991 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor2.CNhs12525.12136-128E3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12136-128E3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor2_CNhs12525_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor2_CNhs12525_tpm_fwd Promyelocytes/myelocytesPmcD2+ bigWig promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_forward 1 1991 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor2.CNhs12525.12136-128E3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12136-128E3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor2_CNhs12525_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor2_CNhs12525_ctss_rev Promyelocytes/myelocytesPmcD2- bigWig promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_reverse 0 1992 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor2.CNhs12525.12136-128E3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12136-128E3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor2_CNhs12525_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor2_CNhs12525_tpm_rev Promyelocytes/myelocytesPmcD2- bigWig promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_reverse 1 1992 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor2.CNhs12525.12136-128E3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12136-128E3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor2_CNhs12525_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor3_CNhs12529_ctss_fwd Promyelocytes/myelocytesPmcD3+ bigWig promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_forward 0 1993 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor3.CNhs12529.12140-128E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12140-128E7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor3_CNhs12529_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor3_CNhs12529_tpm_fwd Promyelocytes/myelocytesPmcD3+ bigWig promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_forward 1 1993 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor3.CNhs12529.12140-128E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12140-128E7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor3_CNhs12529_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor3_CNhs12529_ctss_rev Promyelocytes/myelocytesPmcD3- bigWig promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_reverse 0 1994 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor3.CNhs12529.12140-128E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12140-128E7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor3_CNhs12529_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor3_CNhs12529_tpm_rev Promyelocytes/myelocytesPmcD3- bigWig promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_reverse 1 1994 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor3.CNhs12529.12140-128E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12140-128E7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor3_CNhs12529_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor1_CNhs11051_ctss_fwd AdipocyteBreastD1+ bigWig Adipocyte - breast, donor1_CNhs11051_11376-118A8_forward 0 1995 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20breast%2c%20donor1.CNhs11051.11376-118A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - breast, donor1_CNhs11051_11376-118A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11376-118A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteBreastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteBreastDonor1_CNhs11051_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor1_CNhs11051_tpm_fwd AdipocyteBreastD1+ bigWig Adipocyte - breast, donor1_CNhs11051_11376-118A8_forward 1 1995 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20breast%2c%20donor1.CNhs11051.11376-118A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - breast, donor1_CNhs11051_11376-118A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11376-118A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteBreastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteBreastDonor1_CNhs11051_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor1_CNhs11051_ctss_rev AdipocyteBreastD1- bigWig Adipocyte - breast, donor1_CNhs11051_11376-118A8_reverse 0 1996 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20breast%2c%20donor1.CNhs11051.11376-118A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - breast, donor1_CNhs11051_11376-118A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11376-118A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteBreastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteBreastDonor1_CNhs11051_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor1_CNhs11051_tpm_rev AdipocyteBreastD1- bigWig Adipocyte - breast, donor1_CNhs11051_11376-118A8_reverse 1 1996 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20breast%2c%20donor1.CNhs11051.11376-118A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - breast, donor1_CNhs11051_11376-118A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11376-118A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteBreastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteBreastDonor1_CNhs11051_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor2_CNhs11969_ctss_fwd AdipocyteBreastD2+ bigWig Adipocyte - breast, donor2_CNhs11969_11327-117E4_forward 0 1997 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20breast%2c%20donor2.CNhs11969.11327-117E4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - breast, donor2_CNhs11969_11327-117E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11327-117E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteBreastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteBreastDonor2_CNhs11969_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor2_CNhs11969_tpm_fwd AdipocyteBreastD2+ bigWig Adipocyte - breast, donor2_CNhs11969_11327-117E4_forward 1 1997 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20breast%2c%20donor2.CNhs11969.11327-117E4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - breast, donor2_CNhs11969_11327-117E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11327-117E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteBreastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteBreastDonor2_CNhs11969_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor2_CNhs11969_ctss_rev AdipocyteBreastD2- bigWig Adipocyte - breast, donor2_CNhs11969_11327-117E4_reverse 0 1998 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20breast%2c%20donor2.CNhs11969.11327-117E4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - breast, donor2_CNhs11969_11327-117E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11327-117E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteBreastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteBreastDonor2_CNhs11969_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor2_CNhs11969_tpm_rev AdipocyteBreastD2- bigWig Adipocyte - breast, donor2_CNhs11969_11327-117E4_reverse 1 1998 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20breast%2c%20donor2.CNhs11969.11327-117E4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - breast, donor2_CNhs11969_11327-117E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11327-117E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteBreastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteBreastDonor2_CNhs11969_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor1_CNhs11054_ctss_fwd AdipocyteOmentalD1+ bigWig Adipocyte - omental, donor1_CNhs11054_11473-119C6_forward 0 1999 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20omental%2c%20donor1.CNhs11054.11473-119C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor1_CNhs11054_11473-119C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11473-119C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor1_CNhs11054_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor1_CNhs11054_tpm_fwd AdipocyteOmentalD1+ bigWig Adipocyte - omental, donor1_CNhs11054_11473-119C6_forward 1 1999 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20omental%2c%20donor1.CNhs11054.11473-119C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor1_CNhs11054_11473-119C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11473-119C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor1_CNhs11054_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor1_CNhs11054_ctss_rev AdipocyteOmentalD1- bigWig Adipocyte - omental, donor1_CNhs11054_11473-119C6_reverse 0 2000 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20omental%2c%20donor1.CNhs11054.11473-119C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor1_CNhs11054_11473-119C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11473-119C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor1_CNhs11054_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor1_CNhs11054_tpm_rev AdipocyteOmentalD1- bigWig Adipocyte - omental, donor1_CNhs11054_11473-119C6_reverse 1 2000 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20omental%2c%20donor1.CNhs11054.11473-119C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor1_CNhs11054_11473-119C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11473-119C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor1_CNhs11054_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor2_CNhs12067_ctss_fwd AdipocyteOmentalD2+ bigWig Adipocyte - omental, donor2_CNhs12067_11474-119C7_forward 0 2001 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20omental%2c%20donor2.CNhs12067.11474-119C7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor2_CNhs12067_11474-119C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11474-119C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor2_CNhs12067_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor2_CNhs12067_tpm_fwd AdipocyteOmentalD2+ bigWig Adipocyte - omental, donor2_CNhs12067_11474-119C7_forward 1 2001 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20omental%2c%20donor2.CNhs12067.11474-119C7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor2_CNhs12067_11474-119C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11474-119C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor2_CNhs12067_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor2_CNhs12067_ctss_rev AdipocyteOmentalD2- bigWig Adipocyte - omental, donor2_CNhs12067_11474-119C7_reverse 0 2002 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20omental%2c%20donor2.CNhs12067.11474-119C7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor2_CNhs12067_11474-119C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11474-119C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor2_CNhs12067_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor2_CNhs12067_tpm_rev AdipocyteOmentalD2- bigWig Adipocyte - omental, donor2_CNhs12067_11474-119C7_reverse 1 2002 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20omental%2c%20donor2.CNhs12067.11474-119C7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor2_CNhs12067_11474-119C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11474-119C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor2_CNhs12067_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor3_CNhs12068_ctss_fwd AdipocyteOmentalD3+ bigWig Adipocyte - omental, donor3_CNhs12068_11475-119C8_forward 0 2003 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20omental%2c%20donor3.CNhs12068.11475-119C8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor3_CNhs12068_11475-119C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11475-119C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor3_CNhs12068_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor3_CNhs12068_tpm_fwd AdipocyteOmentalD3+ bigWig Adipocyte - omental, donor3_CNhs12068_11475-119C8_forward 1 2003 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20omental%2c%20donor3.CNhs12068.11475-119C8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor3_CNhs12068_11475-119C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11475-119C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor3_CNhs12068_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor3_CNhs12068_ctss_rev AdipocyteOmentalD3- bigWig Adipocyte - omental, donor3_CNhs12068_11475-119C8_reverse 0 2004 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20omental%2c%20donor3.CNhs12068.11475-119C8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor3_CNhs12068_11475-119C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11475-119C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor3_CNhs12068_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor3_CNhs12068_tpm_rev AdipocyteOmentalD3- bigWig Adipocyte - omental, donor3_CNhs12068_11475-119C8_reverse 1 2004 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20omental%2c%20donor3.CNhs12068.11475-119C8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor3_CNhs12068_11475-119C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11475-119C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor3_CNhs12068_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8\ urlLabel FANTOM5 Details:\ AdipocytePerirenalDonor1_CNhs12069_ctss_fwd AdipocytePerirenalD1+ bigWig Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_forward 0 2005 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20perirenal%2c%20donor1.CNhs12069.11476-119C9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11476-119C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocytePerirenalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocytePerirenalDonor1_CNhs12069_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9\ urlLabel FANTOM5 Details:\ AdipocytePerirenalDonor1_CNhs12069_tpm_fwd AdipocytePerirenalD1+ bigWig Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_forward 1 2005 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20perirenal%2c%20donor1.CNhs12069.11476-119C9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11476-119C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocytePerirenalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocytePerirenalDonor1_CNhs12069_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9\ urlLabel FANTOM5 Details:\ AdipocytePerirenalDonor1_CNhs12069_ctss_rev AdipocytePerirenalD1- bigWig Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_reverse 0 2006 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20perirenal%2c%20donor1.CNhs12069.11476-119C9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11476-119C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocytePerirenalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocytePerirenalDonor1_CNhs12069_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9\ urlLabel FANTOM5 Details:\ AdipocytePerirenalDonor1_CNhs12069_tpm_rev AdipocytePerirenalD1- bigWig Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_reverse 1 2006 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20perirenal%2c%20donor1.CNhs12069.11476-119C9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11476-119C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocytePerirenalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocytePerirenalDonor1_CNhs12069_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor1_CNhs12494_ctss_fwd AdipocyteSubcutaneousD1+ bigWig Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_forward 0 2007 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor1.CNhs12494.11259-116F8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11259-116F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor1_CNhs12494_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor1_CNhs12494_tpm_fwd AdipocyteSubcutaneousD1+ bigWig Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_forward 1 2007 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor1.CNhs12494.11259-116F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11259-116F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteSubcutaneousD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor1_CNhs12494_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor1_CNhs12494_ctss_rev AdipocyteSubcutaneousD1- bigWig Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_reverse 0 2008 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor1.CNhs12494.11259-116F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11259-116F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteSubcutaneousDonor1_CNhs12494_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor1_CNhs12494_tpm_rev AdipocyteSubcutaneousD1- bigWig Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_reverse 1 2008 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor1.CNhs12494.11259-116F8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11259-116F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteSubcutaneousD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteSubcutaneousDonor1_CNhs12494_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor2_CNhs11371_ctss_fwd AdipocyteSubcutaneousD2+ bigWig Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_forward 0 2009 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor2.CNhs11371.11336-117F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11336-117F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor2_CNhs11371_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor2_CNhs11371_tpm_fwd AdipocyteSubcutaneousD2+ bigWig Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_forward 1 2009 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor2.CNhs11371.11336-117F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11336-117F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteSubcutaneousD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor2_CNhs11371_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor2_CNhs11371_ctss_rev AdipocyteSubcutaneousD2- bigWig Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_reverse 0 2010 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor2.CNhs11371.11336-117F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11336-117F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteSubcutaneousDonor2_CNhs11371_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor2_CNhs11371_tpm_rev AdipocyteSubcutaneousD2- bigWig Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_reverse 1 2010 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor2.CNhs11371.11336-117F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11336-117F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteSubcutaneousD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteSubcutaneousDonor2_CNhs11371_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor3_CNhs12017_ctss_fwd AdipocyteSubcutaneousD3+ bigWig Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_forward 0 2011 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor3.CNhs12017.11408-118E4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11408-118E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor3_CNhs12017_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor3_CNhs12017_tpm_fwd AdipocyteSubcutaneousD3+ bigWig Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_forward 1 2011 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor3.CNhs12017.11408-118E4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11408-118E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteSubcutaneousD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor3_CNhs12017_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor3_CNhs12017_ctss_rev AdipocyteSubcutaneousD3- bigWig Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_reverse 0 2012 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor3.CNhs12017.11408-118E4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11408-118E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteSubcutaneousDonor3_CNhs12017_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor3_CNhs12017_tpm_rev AdipocyteSubcutaneousD3- bigWig Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_reverse 1 2012 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor3.CNhs12017.11408-118E4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11408-118E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel 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category=primaryCell strand=forward\ track AlveolarEpithelialCellsDonor2_CNhs12084_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor2_CNhs12084_ctss_rev AlveolarEpithelialCellsD2- bigWig Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_reverse 0 2016 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor2.CNhs12084.11590-120G6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11590-120G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AlveolarEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AlveolarEpithelialCellsDonor2_CNhs12084_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6\ urlLabel FANTOM5 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/gbdb/hg19/fantom5/Astrocyte%20-%20cerebellum%2c%20donor1.CNhs11321.11500-119F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11500-119F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebellumD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor1_CNhs11321_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor1_CNhs11321_tpm_rev AstrocyteCerebellumD1- bigWig Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_reverse 1 2036 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebellum%2c%20donor1.CNhs11321.11500-119F6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11500-119F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebellumD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor1_CNhs11321_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor2_CNhs12081_ctss_fwd AstrocyteCerebellumD2+ bigWig Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_forward 0 2037 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebellum%2c%20donor2.CNhs12081.11580-120F5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11580-120F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebellumD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebellumDonor2_CNhs12081_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor2_CNhs12081_tpm_fwd AstrocyteCerebellumD2+ bigWig Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_forward 1 2037 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebellum%2c%20donor2.CNhs12081.11580-120F5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11580-120F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebellumD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebellumDonor2_CNhs12081_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor2_CNhs12081_ctss_rev AstrocyteCerebellumD2- bigWig Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_reverse 0 2038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebellum%2c%20donor2.CNhs12081.11580-120F5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11580-120F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebellumD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor2_CNhs12081_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor2_CNhs12081_tpm_rev AstrocyteCerebellumD2- bigWig Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_reverse 1 2038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebellum%2c%20donor2.CNhs12081.11580-120F5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11580-120F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebellumD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor2_CNhs12081_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor3_CNhs12117_ctss_fwd AstrocyteCerebellumD3+ bigWig Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_forward 0 2039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebellum%2c%20donor3.CNhs12117.11661-122F5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11661-122F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebellumD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebellumDonor3_CNhs12117_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor3_CNhs12117_tpm_fwd AstrocyteCerebellumD3+ bigWig Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_forward 1 2039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebellum%2c%20donor3.CNhs12117.11661-122F5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11661-122F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebellumD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebellumDonor3_CNhs12117_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor3_CNhs12117_ctss_rev AstrocyteCerebellumD3- bigWig Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_reverse 0 2040 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebellum%2c%20donor3.CNhs12117.11661-122F5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11661-122F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebellumD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor3_CNhs12117_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor3_CNhs12117_tpm_rev AstrocyteCerebellumD3- bigWig Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_reverse 1 2040 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebellum%2c%20donor3.CNhs12117.11661-122F5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11661-122F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebellumD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor3_CNhs12117_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor1_CNhs10864_ctss_fwd AstrocyteCerebralCortexD1+ bigWig Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_forward 0 2041 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor1.CNhs10864.11235-116D2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11235-116D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor1_CNhs10864_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor1_CNhs10864_tpm_fwd AstrocyteCerebralCortexD1+ bigWig Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_forward 1 2041 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor1.CNhs10864.11235-116D2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11235-116D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor1_CNhs10864_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor1_CNhs10864_ctss_rev AstrocyteCerebralCortexD1- bigWig Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_reverse 0 2042 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor1.CNhs10864.11235-116D2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11235-116D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor1_CNhs10864_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor1_CNhs10864_tpm_rev AstrocyteCerebralCortexD1- bigWig Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_reverse 1 2042 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor1.CNhs10864.11235-116D2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11235-116D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor1_CNhs10864_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor2_CNhs11960_ctss_fwd AstrocyteCerebralCortexD2+ bigWig Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_forward 0 2043 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor2.CNhs11960.11316-117D2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11316-117D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor2_CNhs11960_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor2_CNhs11960_tpm_fwd AstrocyteCerebralCortexD2+ bigWig Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_forward 1 2043 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor2.CNhs11960.11316-117D2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11316-117D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor2_CNhs11960_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor2_CNhs11960_ctss_rev AstrocyteCerebralCortexD2- bigWig Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_reverse 0 2044 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor2.CNhs11960.11316-117D2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11316-117D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor2_CNhs11960_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor2_CNhs11960_tpm_rev AstrocyteCerebralCortexD2- bigWig Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_reverse 1 2044 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor2.CNhs11960.11316-117D2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11316-117D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor2_CNhs11960_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor3_CNhs12005_ctss_fwd AstrocyteCerebralCortexD3+ bigWig Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_forward 0 2045 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor3.CNhs12005.11392-118C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11392-118C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor3_CNhs12005_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor3_CNhs12005_tpm_fwd AstrocyteCerebralCortexD3+ bigWig Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_forward 1 2045 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor3.CNhs12005.11392-118C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11392-118C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor3_CNhs12005_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor3_CNhs12005_ctss_rev AstrocyteCerebralCortexD3- bigWig Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_reverse 0 2046 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor3.CNhs12005.11392-118C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11392-118C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor3_CNhs12005_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor3_CNhs12005_tpm_rev AstrocyteCerebralCortexD3- bigWig Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_reverse 1 2046 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor3.CNhs12005.11392-118C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11392-118C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor3_CNhs12005_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6\ urlLabel FANTOM5 Details:\ BasophilsDonor3_CNhs12575_ctss_fwd BasophilsD3+ bigWig Basophils, donor3_CNhs12575_12243-129H2_forward 0 2047 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Basophils%2c%20donor3.CNhs12575.12243-129H2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Basophils, donor3_CNhs12575_12243-129H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12243-129H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BasophilsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BasophilsDonor3_CNhs12575_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2\ urlLabel FANTOM5 Details:\ BasophilsDonor3_CNhs12575_tpm_fwd BasophilsD3+ bigWig Basophils, donor3_CNhs12575_12243-129H2_forward 1 2047 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Basophils%2c%20donor3.CNhs12575.12243-129H2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Basophils, donor3_CNhs12575_12243-129H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12243-129H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BasophilsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BasophilsDonor3_CNhs12575_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2\ urlLabel FANTOM5 Details:\ BasophilsDonor3_CNhs12575_ctss_rev BasophilsD3- bigWig Basophils, donor3_CNhs12575_12243-129H2_reverse 0 2048 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Basophils%2c%20donor3.CNhs12575.12243-129H2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Basophils, donor3_CNhs12575_12243-129H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12243-129H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BasophilsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BasophilsDonor3_CNhs12575_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2\ urlLabel FANTOM5 Details:\ BasophilsDonor3_CNhs12575_tpm_rev BasophilsD3- bigWig Basophils, donor3_CNhs12575_12243-129H2_reverse 1 2048 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Basophils%2c%20donor3.CNhs12575.12243-129H2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Basophils, donor3_CNhs12575_12243-129H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12243-129H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BasophilsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BasophilsDonor3_CNhs12575_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor1_CNhs11327_ctss_fwd BronchialEpithelialCellD1+ bigWig Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_forward 0 2049 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor1.CNhs11327.11511-119G8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11511-119G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor1_CNhs11327_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor1_CNhs11327_tpm_fwd BronchialEpithelialCellD1+ bigWig Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_forward 1 2049 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor1.CNhs11327.11511-119G8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11511-119G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor1_CNhs11327_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor1_CNhs11327_ctss_rev BronchialEpithelialCellD1- bigWig Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_reverse 0 2050 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor1.CNhs11327.11511-119G8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11511-119G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor1_CNhs11327_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor1_CNhs11327_tpm_rev BronchialEpithelialCellD1- bigWig Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_reverse 1 2050 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor1.CNhs11327.11511-119G8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11511-119G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor1_CNhs11327_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor2_CNhs12085_ctss_fwd BronchialEpithelialCellD2+ bigWig Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_forward 0 2051 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor2.CNhs12085.11591-120G7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11591-120G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor2_CNhs12085_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor2_CNhs12085_tpm_fwd BronchialEpithelialCellD2+ bigWig Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_forward 1 2051 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor2.CNhs12085.11591-120G7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11591-120G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor2_CNhs12085_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor2_CNhs12085_ctss_rev BronchialEpithelialCellD2- bigWig Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_reverse 0 2052 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor2.CNhs12085.11591-120G7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11591-120G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor2_CNhs12085_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor2_CNhs12085_tpm_rev BronchialEpithelialCellD2- bigWig Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_reverse 1 2052 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor2.CNhs12085.11591-120G7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11591-120G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor2_CNhs12085_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor3_CNhs12623_ctss_fwd BronchialEpithelialCellD3+ bigWig Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_forward 0 2053 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor3.CNhs12623.11672-122G7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11672-122G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor3_CNhs12623_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor3_CNhs12623_tpm_fwd BronchialEpithelialCellD3+ bigWig Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_forward 1 2053 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor3.CNhs12623.11672-122G7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11672-122G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor3_CNhs12623_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor3_CNhs12623_ctss_rev BronchialEpithelialCellD3- bigWig Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_reverse 0 2054 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor3.CNhs12623.11672-122G7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11672-122G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor3_CNhs12623_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor3_CNhs12623_tpm_rev BronchialEpithelialCellD3- bigWig Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_reverse 1 2054 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor3.CNhs12623.11672-122G7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11672-122G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor3_CNhs12623_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor4_CNhs12054_ctss_fwd BronchialEpithelialCellD4+ bigWig Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_forward 0 2055 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor4.CNhs12054.11453-119A4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11453-119A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor4_CNhs12054_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor4_CNhs12054_tpm_fwd BronchialEpithelialCellD4+ bigWig Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_forward 1 2055 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor4.CNhs12054.11453-119A4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11453-119A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor4_CNhs12054_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor4_CNhs12054_ctss_rev BronchialEpithelialCellD4- bigWig Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_reverse 0 2056 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor4.CNhs12054.11453-119A4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11453-119A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor4_CNhs12054_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor4_CNhs12054_tpm_rev BronchialEpithelialCellD4- bigWig Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_reverse 1 2056 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor4.CNhs12054.11453-119A4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11453-119A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor4_CNhs12054_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor5_CNhs12058_ctss_fwd BronchialEpithelialCellD5+ bigWig Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_forward 0 2057 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor5.CNhs12058.11457-119A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11457-119A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor5_CNhs12058_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor5_CNhs12058_tpm_fwd BronchialEpithelialCellD5+ bigWig Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_forward 1 2057 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor5.CNhs12058.11457-119A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11457-119A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor5_CNhs12058_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor5_CNhs12058_ctss_rev BronchialEpithelialCellD5- bigWig Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_reverse 0 2058 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor5.CNhs12058.11457-119A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11457-119A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor5_CNhs12058_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor5_CNhs12058_tpm_rev BronchialEpithelialCellD5- bigWig Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_reverse 1 2058 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor5.CNhs12058.11457-119A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11457-119A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor5_CNhs12058_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor6_CNhs12062_ctss_fwd BronchialEpithelialCellD6+ bigWig Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_forward 0 2059 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor6.CNhs12062.11461-119B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11461-119B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor6_CNhs12062_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor6_CNhs12062_tpm_fwd BronchialEpithelialCellD6+ bigWig Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_forward 1 2059 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor6.CNhs12062.11461-119B3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11461-119B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor6_CNhs12062_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor6_CNhs12062_ctss_rev BronchialEpithelialCellD6- bigWig Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_reverse 0 2060 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor6.CNhs12062.11461-119B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11461-119B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor6_CNhs12062_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor6_CNhs12062_tpm_rev BronchialEpithelialCellD6- bigWig Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_reverse 1 2060 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor6.CNhs12062.11461-119B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11461-119B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor6_CNhs12062_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor7_CNhs12642_ctss_fwd BronchialEpithelialCellD7+ bigWig Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_forward 0 2061 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor7.CNhs12642.11769-123I5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11769-123I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD7+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor7_CNhs12642_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor7_CNhs12642_tpm_fwd BronchialEpithelialCellD7+ bigWig Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_forward 1 2061 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor7.CNhs12642.11769-123I5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11769-123I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD7+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor7_CNhs12642_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor7_CNhs12642_ctss_rev BronchialEpithelialCellD7- bigWig Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_reverse 0 2062 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor7.CNhs12642.11769-123I5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11769-123I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD7-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor7_CNhs12642_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor7_CNhs12642_tpm_rev BronchialEpithelialCellD7- bigWig Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_reverse 1 2062 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor7.CNhs12642.11769-123I5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11769-123I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD7-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor7_CNhs12642_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor1_CNhs12341_ctss_fwd CardiacMyocyteD1+ bigWig Cardiac Myocyte, donor1_CNhs12341_11525-119I4_forward 0 2063 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Cardiac%20Myocyte%2c%20donor1.CNhs12341.11525-119I4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Cardiac Myocyte, donor1_CNhs12341_11525-119I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11525-119I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CardiacMyocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CardiacMyocyteDonor1_CNhs12341_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor1_CNhs12341_tpm_fwd CardiacMyocyteD1+ bigWig Cardiac Myocyte, donor1_CNhs12341_11525-119I4_forward 1 2063 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Cardiac%20Myocyte%2c%20donor1.CNhs12341.11525-119I4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Cardiac Myocyte, donor1_CNhs12341_11525-119I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11525-119I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CardiacMyocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CardiacMyocyteDonor1_CNhs12341_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor1_CNhs12341_ctss_rev CardiacMyocyteD1- bigWig Cardiac Myocyte, donor1_CNhs12341_11525-119I4_reverse 0 2064 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Cardiac%20Myocyte%2c%20donor1.CNhs12341.11525-119I4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Cardiac Myocyte, donor1_CNhs12341_11525-119I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11525-119I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CardiacMyocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CardiacMyocyteDonor1_CNhs12341_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor1_CNhs12341_tpm_rev CardiacMyocyteD1- bigWig Cardiac Myocyte, donor1_CNhs12341_11525-119I4_reverse 1 2064 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Cardiac%20Myocyte%2c%20donor1.CNhs12341.11525-119I4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Cardiac Myocyte, donor1_CNhs12341_11525-119I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11525-119I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CardiacMyocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CardiacMyocyteDonor1_CNhs12341_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor2_CNhs12350_ctss_fwd CardiacMyocyteD2+ bigWig Cardiac Myocyte, donor2_CNhs12350_11605-120I3_forward 0 2065 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11605-120I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Cardiac%20Myocyte%2c%20donor2.CNhs12350.11605-120I3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Cardiac Myocyte, donor2_CNhs12350_11605-120I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11605-120I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CardiacMyocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CardiacMyocyteDonor2_CNhs12350_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11605-120I3\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor2_CNhs12350_tpm_fwd CardiacMyocyteD2+ bigWig Cardiac Myocyte, donor2_CNhs12350_11605-120I3_forward 1 2065 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11605-120I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Cardiac%20Myocyte%2c%20donor2.CNhs12350.11605-120I3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Cardiac Myocyte, donor2_CNhs12350_11605-120I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11605-120I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CardiacMyocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CardiacMyocyteDonor2_CNhs12350_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11605-120I3\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor2_CNhs12350_ctss_rev CardiacMyocyteD2- bigWig Cardiac Myocyte, donor2_CNhs12350_11605-120I3_reverse 0 2066 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11605-120I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Cardiac%20Myocyte%2c%20donor2.CNhs12350.11605-120I3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Cardiac Myocyte, donor2_CNhs12350_11605-120I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11605-120I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CardiacMyocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CardiacMyocyteDonor2_CNhs12350_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11605-120I3\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor2_CNhs12350_tpm_rev CardiacMyocyteD2- bigWig Cardiac Myocyte, donor2_CNhs12350_11605-120I3_reverse 1 2066 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11605-120I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Cardiac%20Myocyte%2c%20donor2.CNhs12350.11605-120I3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Cardiac Myocyte, donor2_CNhs12350_11605-120I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11605-120I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CardiacMyocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CardiacMyocyteDonor2_CNhs12350_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11605-120I3\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor3_CNhs12571_ctss_fwd CardiacMyocyteD3+ bigWig Cardiac Myocyte, donor3_CNhs12571_11686-122I3_forward 0 2067 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11686-122I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Cardiac%20Myocyte%2c%20donor3.CNhs12571.11686-122I3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Cardiac Myocyte, donor3_CNhs12571_11686-122I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11686-122I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CardiacMyocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CardiacMyocyteDonor3_CNhs12571_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11686-122I3\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor3_CNhs12571_tpm_fwd CardiacMyocyteD3+ bigWig Cardiac Myocyte, donor3_CNhs12571_11686-122I3_forward 1 2067 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11686-122I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Cardiac%20Myocyte%2c%20donor3.CNhs12571.11686-122I3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Cardiac Myocyte, donor3_CNhs12571_11686-122I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11686-122I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CardiacMyocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CardiacMyocyteDonor3_CNhs12571_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11686-122I3\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor3_CNhs12571_ctss_rev CardiacMyocyteD3- bigWig Cardiac Myocyte, donor3_CNhs12571_11686-122I3_reverse 0 2068 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11686-122I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Cardiac%20Myocyte%2c%20donor3.CNhs12571.11686-122I3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Cardiac Myocyte, donor3_CNhs12571_11686-122I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11686-122I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CardiacMyocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CardiacMyocyteDonor3_CNhs12571_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11686-122I3\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor3_CNhs12571_tpm_rev CardiacMyocyteD3- bigWig Cardiac Myocyte, donor3_CNhs12571_11686-122I3_reverse 1 2068 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11686-122I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Cardiac%20Myocyte%2c%20donor3.CNhs12571.11686-122I3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Cardiac Myocyte, donor3_CNhs12571_11686-122I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11686-122I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CardiacMyocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CardiacMyocyteDonor3_CNhs12571_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11686-122I3\ urlLabel FANTOM5 Details:\ MultipotentCordBloodUnrestrictedSomaticStemCellsDonor1_CNhs11350_ctss_fwd CbStemCellsD1+ bigWig Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1_CNhs11350_11549-120C1_forward 0 2069 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11549-120C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor1.CNhs11350.11549-120C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1_CNhs11350_11549-120C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11549-120C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CbStemCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MultipotentCordBloodUnrestrictedSomaticStemCellsDonor1_CNhs11350_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11549-120C1\ urlLabel FANTOM5 Details:\ MultipotentCordBloodUnrestrictedSomaticStemCellsDonor1_CNhs11350_tpm_fwd CbStemCellsD1+ bigWig Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1_CNhs11350_11549-120C1_forward 1 2069 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11549-120C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor1.CNhs11350.11549-120C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1_CNhs11350_11549-120C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11549-120C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CbStemCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MultipotentCordBloodUnrestrictedSomaticStemCellsDonor1_CNhs11350_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11549-120C1\ urlLabel FANTOM5 Details:\ MultipotentCordBloodUnrestrictedSomaticStemCellsDonor1_CNhs11350_ctss_rev CbStemCellsD1- bigWig Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1_CNhs11350_11549-120C1_reverse 0 2070 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11549-120C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor1.CNhs11350.11549-120C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1_CNhs11350_11549-120C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11549-120C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CbStemCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MultipotentCordBloodUnrestrictedSomaticStemCellsDonor1_CNhs11350_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11549-120C1\ urlLabel FANTOM5 Details:\ MultipotentCordBloodUnrestrictedSomaticStemCellsDonor1_CNhs11350_tpm_rev CbStemCellsD1- bigWig Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1_CNhs11350_11549-120C1_reverse 1 2070 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11549-120C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor1.CNhs11350.11549-120C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1_CNhs11350_11549-120C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11549-120C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CbStemCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MultipotentCordBloodUnrestrictedSomaticStemCellsDonor1_CNhs11350_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11549-120C1\ urlLabel FANTOM5 Details:\ MultipotentCordBloodUnrestrictedSomaticStemCellsDonor2_CNhs12105_ctss_fwd CbStemCellsD2+ bigWig Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2_CNhs12105_11629-122B9_forward 0 2071 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11629-122B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor2.CNhs12105.11629-122B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2_CNhs12105_11629-122B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11629-122B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CbStemCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MultipotentCordBloodUnrestrictedSomaticStemCellsDonor2_CNhs12105_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11629-122B9\ urlLabel FANTOM5 Details:\ MultipotentCordBloodUnrestrictedSomaticStemCellsDonor2_CNhs12105_tpm_fwd CbStemCellsD2+ bigWig Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2_CNhs12105_11629-122B9_forward 1 2071 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11629-122B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor2.CNhs12105.11629-122B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2_CNhs12105_11629-122B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11629-122B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CbStemCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MultipotentCordBloodUnrestrictedSomaticStemCellsDonor2_CNhs12105_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11629-122B9\ urlLabel FANTOM5 Details:\ MultipotentCordBloodUnrestrictedSomaticStemCellsDonor2_CNhs12105_ctss_rev CbStemCellsD2- bigWig Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2_CNhs12105_11629-122B9_reverse 0 2072 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11629-122B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor2.CNhs12105.11629-122B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2_CNhs12105_11629-122B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11629-122B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CbStemCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MultipotentCordBloodUnrestrictedSomaticStemCellsDonor2_CNhs12105_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11629-122B9\ urlLabel FANTOM5 Details:\ MultipotentCordBloodUnrestrictedSomaticStemCellsDonor2_CNhs12105_tpm_rev CbStemCellsD2- bigWig Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2_CNhs12105_11629-122B9_reverse 1 2072 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11629-122B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor2.CNhs12105.11629-122B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2_CNhs12105_11629-122B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11629-122B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CbStemCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MultipotentCordBloodUnrestrictedSomaticStemCellsDonor2_CNhs12105_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11629-122B9\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13541_ctss_fwd Cd14+cd16+MonocytesD1+ bigWig CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_forward 0 2073 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor1.CNhs13541.11789-124B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11789-124B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16+MonocytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor1_CNhs13541_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13541_tpm_fwd Cd14+cd16+MonocytesD1+ bigWig CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_forward 1 2073 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor1.CNhs13541.11789-124B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11789-124B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16+MonocytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor1_CNhs13541_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13541_ctss_rev Cd14+cd16+MonocytesD1- bigWig CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_reverse 0 2074 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor1.CNhs13541.11789-124B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11789-124B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16+MonocytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor1_CNhs13541_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13541_tpm_rev Cd14+cd16+MonocytesD1- bigWig CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_reverse 1 2074 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor1.CNhs13541.11789-124B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11789-124B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16+MonocytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor1_CNhs13541_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13208_ctss_fwd Cd14+cd16+MonocytesD2+ bigWig CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_forward 0 2075 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor2.CNhs13208.11801-124D1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11801-124D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16+MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13208_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13208_tpm_fwd Cd14+cd16+MonocytesD2+ bigWig CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_forward 1 2075 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor2.CNhs13208.11801-124D1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11801-124D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16+MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13208_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13208_ctss_rev Cd14+cd16+MonocytesD2- bigWig CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_reverse 0 2076 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor2.CNhs13208.11801-124D1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11801-124D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16+MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13208_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13208_tpm_rev Cd14+cd16+MonocytesD2- bigWig CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_reverse 1 2076 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor2.CNhs13208.11801-124D1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11801-124D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16+MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13208_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13549_ctss_fwd Cd14+cd16+MonocytesD3+ bigWig CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_forward 0 2077 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor3.CNhs13549.11912-125G4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11912-125G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16+MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13549_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13549_tpm_fwd Cd14+cd16+MonocytesD3+ bigWig CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_forward 1 2077 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor3.CNhs13549.11912-125G4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11912-125G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16+MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13549_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13549_ctss_rev Cd14+cd16+MonocytesD3- bigWig CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_reverse 0 2078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor3.CNhs13549.11912-125G4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11912-125G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16+MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13549_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13549_tpm_rev Cd14+cd16+MonocytesD3- bigWig CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_reverse 1 2078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor3.CNhs13549.11912-125G4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11912-125G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16+MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13549_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13224_ctss_fwd Cd14+cd16-MonocytesD1+ bigWig CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_forward 0 2079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor1.CNhs13224.11788-124B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11788-124B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor1_CNhs13224_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13224_tpm_fwd Cd14+cd16-MonocytesD1+ bigWig CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_forward 1 2079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor1.CNhs13224.11788-124B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11788-124B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor1_CNhs13224_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13224_ctss_rev Cd14+cd16-MonocytesD1- bigWig CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_reverse 0 2080 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor1.CNhs13224.11788-124B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11788-124B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor1_CNhs13224_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13224_tpm_rev Cd14+cd16-MonocytesD1- bigWig CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_reverse 1 2080 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor1.CNhs13224.11788-124B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11788-124B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor1_CNhs13224_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13216_ctss_fwd Cd14+cd16-MonocytesD2+ bigWig CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_forward 0 2081 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor2.CNhs13216.11799-124C8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11799-124C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13216_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13216_tpm_fwd Cd14+cd16-MonocytesD2+ bigWig CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_forward 1 2081 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor2.CNhs13216.11799-124C8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11799-124C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13216_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13216_ctss_rev Cd14+cd16-MonocytesD2- bigWig CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_reverse 0 2082 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor2.CNhs13216.11799-124C8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11799-124C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13216_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13216_tpm_rev Cd14+cd16-MonocytesD2- bigWig CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_reverse 1 2082 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor2.CNhs13216.11799-124C8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11799-124C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13216_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13540_ctss_fwd Cd14+cd16-MonocytesD3+ bigWig CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_forward 0 2083 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor3.CNhs13540.11910-125G2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11910-125G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13540_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13540_tpm_fwd Cd14+cd16-MonocytesD3+ bigWig CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_forward 1 2083 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor3.CNhs13540.11910-125G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11910-125G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13540_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13540_ctss_rev Cd14+cd16-MonocytesD3- bigWig CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_reverse 0 2084 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor3.CNhs13540.11910-125G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11910-125G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13540_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13540_tpm_rev Cd14+cd16-MonocytesD3- bigWig CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_reverse 1 2084 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor3.CNhs13540.11910-125G2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11910-125G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13540_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor1_CNhs10852_ctss_fwd Cd14+MoD1+ bigWig CD14+ Monocytes, donor1_CNhs10852_11224-116B9_forward 0 2085 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20Monocytes%2c%20donor1.CNhs10852.11224-116B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor1_CNhs10852_11224-116B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11224-116B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor1_CNhs10852_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor1_CNhs10852_tpm_fwd Cd14+MoD1+ bigWig CD14+ Monocytes, donor1_CNhs10852_11224-116B9_forward 1 2085 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20Monocytes%2c%20donor1.CNhs10852.11224-116B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor1_CNhs10852_11224-116B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11224-116B9 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor1_CNhs10852_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor1_CNhs10852_ctss_rev Cd14+MoD1- bigWig CD14+ Monocytes, donor1_CNhs10852_11224-116B9_reverse 0 2086 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20Monocytes%2c%20donor1.CNhs10852.11224-116B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor1_CNhs10852_11224-116B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11224-116B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor1_CNhs10852_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor1_CNhs10852_tpm_rev Cd14+MoD1- bigWig CD14+ Monocytes, donor1_CNhs10852_11224-116B9_reverse 1 2086 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20Monocytes%2c%20donor1.CNhs10852.11224-116B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor1_CNhs10852_11224-116B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11224-116B9 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor1_CNhs10852_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor2_CNhs11954_ctss_fwd Cd14+MoD2+ bigWig CD14+ Monocytes, donor2_CNhs11954_11305-117B9_forward 0 2087 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20Monocytes%2c%20donor2.CNhs11954.11305-117B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor2_CNhs11954_11305-117B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11305-117B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor2_CNhs11954_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor2_CNhs11954_tpm_fwd Cd14+MoD2+ bigWig CD14+ Monocytes, donor2_CNhs11954_11305-117B9_forward 1 2087 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20Monocytes%2c%20donor2.CNhs11954.11305-117B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor2_CNhs11954_11305-117B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11305-117B9 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor2_CNhs11954_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor2_CNhs11954_ctss_rev Cd14+MoD2- bigWig CD14+ Monocytes, donor2_CNhs11954_11305-117B9_reverse 0 2088 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20Monocytes%2c%20donor2.CNhs11954.11305-117B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor2_CNhs11954_11305-117B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11305-117B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor2_CNhs11954_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor2_CNhs11954_tpm_rev Cd14+MoD2- bigWig CD14+ Monocytes, donor2_CNhs11954_11305-117B9_reverse 1 2088 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20Monocytes%2c%20donor2.CNhs11954.11305-117B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor2_CNhs11954_11305-117B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11305-117B9 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor2_CNhs11954_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor3_CNhs11997_ctss_fwd Cd14+MoD3+ bigWig CD14+ Monocytes, donor3_CNhs11997_11381-118B4_forward 0 2089 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20Monocytes%2c%20donor3.CNhs11997.11381-118B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor3_CNhs11997_11381-118B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11381-118B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor3_CNhs11997_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor3_CNhs11997_tpm_fwd Cd14+MoD3+ bigWig CD14+ Monocytes, donor3_CNhs11997_11381-118B4_forward 1 2089 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20Monocytes%2c%20donor3.CNhs11997.11381-118B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor3_CNhs11997_11381-118B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11381-118B4 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor3_CNhs11997_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor3_CNhs11997_ctss_rev Cd14+MoD3- bigWig CD14+ Monocytes, donor3_CNhs11997_11381-118B4_reverse 0 2090 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20Monocytes%2c%20donor3.CNhs11997.11381-118B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor3_CNhs11997_11381-118B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11381-118B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor3_CNhs11997_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor3_CNhs11997_tpm_rev Cd14+MoD3- bigWig CD14+ Monocytes, donor3_CNhs11997_11381-118B4_reverse 1 2090 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20Monocytes%2c%20donor3.CNhs11997.11381-118B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor3_CNhs11997_11381-118B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11381-118B4 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor3_CNhs11997_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_ctss_fwd Cd14+MoEndothelialProgenitorCellsD1+ bigWig CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_forward 0 2091 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor1.CNhs10858.11229-116C5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11229-116C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoEndothelialProgenitorCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_tpm_fwd Cd14+MoEndothelialProgenitorCellsD1+ bigWig CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_forward 1 2091 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor1.CNhs10858.11229-116C5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11229-116C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoEndothelialProgenitorCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_ctss_rev Cd14+MoEndothelialProgenitorCellsD1- bigWig CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_reverse 0 2092 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor1.CNhs10858.11229-116C5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11229-116C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoEndothelialProgenitorCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_tpm_rev Cd14+MoEndothelialProgenitorCellsD1- bigWig CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_reverse 1 2092 0 0 255 127 127 255 0 0 0 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http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor2.CNhs11897.11310-117C5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11310-117C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoEndothelialProgenitorCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_tpm_rev Cd14+MoEndothelialProgenitorCellsD2- bigWig CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_reverse 1 2094 0 0 255 127 127 255 0 0 0 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http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor3.CNhs11904.11386-118B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11386-118B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoEndothelialProgenitorCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_ctss_rev Cd14+MoEndothelialProgenitorCellsD3- bigWig CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_reverse 0 2096 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor3.CNhs11904.11386-118B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11386-118B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoEndothelialProgenitorCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_tpm_rev Cd14+MoEndothelialProgenitorCellsD3- bigWig CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_reverse 1 2096 0 0 255 127 127 255 0 0 0 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/gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor1.CNhs13468.11863-125A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11863-125A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor1_CNhs13468_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor1_CNhs13468_tpm_fwd Cd14+MoMockTreatedD1+ bigWig CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_forward 1 2097 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor1.CNhs13468.11863-125A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11863-125A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor1_CNhs13468_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor1_CNhs13468_ctss_rev Cd14+MoMockTreatedD1- bigWig CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_reverse 0 2098 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor1.CNhs13468.11863-125A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11863-125A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor1_CNhs13468_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor1_CNhs13468_tpm_rev Cd14+MoMockTreatedD1- bigWig CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_reverse 1 2098 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor1.CNhs13468.11863-125A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11863-125A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor1_CNhs13468_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor2_CNhs13484_ctss_fwd Cd14+MoMockTreatedD2+ bigWig CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_forward 0 2099 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor2.CNhs13484.11873-125C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11873-125C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor2_CNhs13484_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor2_CNhs13484_tpm_fwd Cd14+MoMockTreatedD2+ bigWig CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_forward 1 2099 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor2.CNhs13484.11873-125C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11873-125C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor2_CNhs13484_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor2_CNhs13484_ctss_rev Cd14+MoMockTreatedD2- bigWig CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_reverse 0 2100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor2.CNhs13484.11873-125C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11873-125C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor2_CNhs13484_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor2_CNhs13484_tpm_rev Cd14+MoMockTreatedD2- bigWig CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_reverse 1 2100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor2.CNhs13484.11873-125C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11873-125C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor2_CNhs13484_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor3_CNhs13491_ctss_fwd Cd14+MoMockTreatedD3+ bigWig CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_forward 0 2101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor3.CNhs13491.11883-125D2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11883-125D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor3_CNhs13491_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor3_CNhs13491_tpm_fwd Cd14+MoMockTreatedD3+ bigWig CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_forward 1 2101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor3.CNhs13491.11883-125D2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11883-125D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor3_CNhs13491_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor3_CNhs13491_ctss_rev Cd14+MoMockTreatedD3- bigWig CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_reverse 0 2102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor3.CNhs13491.11883-125D2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11883-125D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor3_CNhs13491_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor3_CNhs13491_tpm_rev Cd14+MoMockTreatedD3- bigWig CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_reverse 1 2102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor3.CNhs13491.11883-125D2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11883-125D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor3_CNhs13491_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_ctss_fwd Cd14+MoW/B-glucanD1+ bigWig CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_forward 0 2103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor1.CNhs13474.11869-125B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11869-125B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_tpm_fwd Cd14+MoW/B-glucanD1+ bigWig CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_forward 1 2103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor1.CNhs13474.11869-125B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11869-125B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_ctss_rev Cd14+MoW/B-glucanD1- bigWig CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_reverse 0 2104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor1.CNhs13474.11869-125B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11869-125B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_tpm_rev Cd14+MoW/B-glucanD1- bigWig CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_reverse 1 2104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor1.CNhs13474.11869-125B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11869-125B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_ctss_fwd Cd14+MoW/B-glucanD2+ bigWig CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_forward 0 2105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor2.CNhs13489.11879-125C7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11879-125C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_tpm_fwd Cd14+MoW/B-glucanD2+ bigWig CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_forward 1 2105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor2.CNhs13489.11879-125C7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11879-125C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_ctss_rev Cd14+MoW/B-glucanD2- bigWig CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_reverse 0 2106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor2.CNhs13489.11879-125C7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11879-125C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_tpm_rev Cd14+MoW/B-glucanD2- bigWig CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_reverse 1 2106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor2.CNhs13489.11879-125C7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11879-125C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_ctss_fwd Cd14+MoW/B-glucanD3+ bigWig CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_forward 0 2107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor3.CNhs13495.11889-125D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11889-125D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_tpm_fwd Cd14+MoW/B-glucanD3+ bigWig CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_forward 1 2107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor3.CNhs13495.11889-125D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11889-125D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_ctss_rev Cd14+MoW/B-glucanD3- bigWig CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_reverse 0 2108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor3.CNhs13495.11889-125D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11889-125D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_tpm_rev Cd14+MoW/B-glucanD3- bigWig CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_reverse 1 2108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor3.CNhs13495.11889-125D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11889-125D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor1_CNhs13465_ctss_fwd Cd14+MoW/BcgD1+ bigWig CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_forward 0 2109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor1.CNhs13465.11860-125A6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11860-125A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor1_CNhs13465_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor1_CNhs13465_tpm_fwd Cd14+MoW/BcgD1+ bigWig CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_forward 1 2109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor1.CNhs13465.11860-125A6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11860-125A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor1_CNhs13465_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor1_CNhs13465_ctss_rev Cd14+MoW/BcgD1- bigWig CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_reverse 0 2110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor1.CNhs13465.11860-125A6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11860-125A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor1_CNhs13465_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor1_CNhs13465_tpm_rev Cd14+MoW/BcgD1- bigWig CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_reverse 1 2110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor1.CNhs13465.11860-125A6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11860-125A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor1_CNhs13465_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor2_CNhs13475_ctss_fwd Cd14+MoW/BcgD2+ bigWig CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_forward 0 2111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor2.CNhs13475.11870-125B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11870-125B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor2_CNhs13475_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor2_CNhs13475_tpm_fwd Cd14+MoW/BcgD2+ bigWig CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_forward 1 2111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor2.CNhs13475.11870-125B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11870-125B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor2_CNhs13475_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor2_CNhs13475_ctss_rev Cd14+MoW/BcgD2- bigWig CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_reverse 0 2112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor2.CNhs13475.11870-125B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11870-125B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor2_CNhs13475_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor2_CNhs13475_tpm_rev Cd14+MoW/BcgD2- bigWig CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_reverse 1 2112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor2.CNhs13475.11870-125B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11870-125B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor2_CNhs13475_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor3_CNhs13543_ctss_fwd Cd14+MoW/BcgD3+ bigWig CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_forward 0 2113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor3.CNhs13543.11880-125C8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11880-125C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor3_CNhs13543_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor3_CNhs13543_tpm_fwd Cd14+MoW/BcgD3+ bigWig CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_forward 1 2113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor3.CNhs13543.11880-125C8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11880-125C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor3_CNhs13543_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor3_CNhs13543_ctss_rev Cd14+MoW/BcgD3- bigWig CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_reverse 0 2114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor3.CNhs13543.11880-125C8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11880-125C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor3_CNhs13543_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor3_CNhs13543_tpm_rev Cd14+MoW/BcgD3- bigWig CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_reverse 1 2114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor3.CNhs13543.11880-125C8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11880-125C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor3_CNhs13543_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_ctss_fwd Cd14+MoW/CandidaD1+ bigWig CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_forward 0 2115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor1.CNhs13473.11868-125B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11868-125B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_tpm_fwd Cd14+MoW/CandidaD1+ bigWig CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_forward 1 2115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor1.CNhs13473.11868-125B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11868-125B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_ctss_rev Cd14+MoW/CandidaD1- bigWig CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_reverse 0 2116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor1.CNhs13473.11868-125B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11868-125B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_tpm_rev Cd14+MoW/CandidaD1- bigWig CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_reverse 1 2116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor1.CNhs13473.11868-125B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11868-125B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_ctss_fwd Cd14+MoW/CandidaD2+ bigWig CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_forward 0 2117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor2.CNhs13488.11878-125C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11878-125C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_tpm_fwd Cd14+MoW/CandidaD2+ bigWig CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_forward 1 2117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor2.CNhs13488.11878-125C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11878-125C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_ctss_rev Cd14+MoW/CandidaD2- bigWig CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_reverse 0 2118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor2.CNhs13488.11878-125C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11878-125C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_tpm_rev Cd14+MoW/CandidaD2- bigWig CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_reverse 1 2118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor2.CNhs13488.11878-125C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11878-125C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_ctss_fwd Cd14+MoW/CandidaD3+ bigWig CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_forward 0 2119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor3.CNhs13494.11888-125D7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11888-125D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_tpm_fwd Cd14+MoW/CandidaD3+ bigWig CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_forward 1 2119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor3.CNhs13494.11888-125D7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11888-125D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_ctss_rev Cd14+MoW/CandidaD3- bigWig CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_reverse 0 2120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor3.CNhs13494.11888-125D7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11888-125D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_tpm_rev Cd14+MoW/CandidaD3- bigWig CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_reverse 1 2120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor3.CNhs13494.11888-125D7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11888-125D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_ctss_fwd Cd14+MoW/CryptococcusD1+ bigWig CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_forward 0 2121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor1.CNhs13472.11867-125B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11867-125B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_tpm_fwd Cd14+MoW/CryptococcusD1+ bigWig CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_forward 1 2121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor1.CNhs13472.11867-125B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11867-125B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_ctss_rev Cd14+MoW/CryptococcusD1- bigWig CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_reverse 0 2122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor1.CNhs13472.11867-125B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11867-125B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_tpm_rev Cd14+MoW/CryptococcusD1- bigWig CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_reverse 1 2122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor1.CNhs13472.11867-125B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11867-125B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_ctss_fwd Cd14+MoW/CryptococcusD2+ bigWig CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_forward 0 2123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor2.CNhs13487.11877-125C5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11877-125C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_tpm_fwd Cd14+MoW/CryptococcusD2+ bigWig CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_forward 1 2123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor2.CNhs13487.11877-125C5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11877-125C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_ctss_rev Cd14+MoW/CryptococcusD2- bigWig CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_reverse 0 2124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor2.CNhs13487.11877-125C5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11877-125C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_tpm_rev Cd14+MoW/CryptococcusD2- bigWig CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_reverse 1 2124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor2.CNhs13487.11877-125C5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11877-125C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_ctss_fwd Cd14+MoW/CryptococcusD3+ bigWig CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_forward 0 2125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor3.CNhs13546.11887-125D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11887-125D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_tpm_fwd Cd14+MoW/CryptococcusD3+ bigWig CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_forward 1 2125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor3.CNhs13546.11887-125D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11887-125D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_ctss_rev Cd14+MoW/CryptococcusD3- bigWig CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_reverse 0 2126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor3.CNhs13546.11887-125D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11887-125D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_tpm_rev Cd14+MoW/CryptococcusD3- bigWig CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_reverse 1 2126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor3.CNhs13546.11887-125D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11887-125D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_ctss_fwd Cd14+MoW/GroupAStreptococciD1+ bigWig CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_forward 0 2127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor1.CNhs13469.11864-125B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11864-125B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_tpm_fwd Cd14+MoW/GroupAStreptococciD1+ bigWig CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_forward 1 2127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor1.CNhs13469.11864-125B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11864-125B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_ctss_rev Cd14+MoW/GroupAStreptococciD1- bigWig CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_reverse 0 2128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor1.CNhs13469.11864-125B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11864-125B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_tpm_rev Cd14+MoW/GroupAStreptococciD1- bigWig CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_reverse 1 2128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor1.CNhs13469.11864-125B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11864-125B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_ctss_fwd Cd14+MoW/GroupAStreptococciD2+ bigWig CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_forward 0 2129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor2.CNhs13532.11874-125C2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11874-125C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_tpm_fwd Cd14+MoW/GroupAStreptococciD2+ bigWig CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_forward 1 2129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor2.CNhs13532.11874-125C2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11874-125C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_ctss_rev Cd14+MoW/GroupAStreptococciD2- bigWig CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_reverse 0 2130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor2.CNhs13532.11874-125C2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11874-125C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_tpm_rev Cd14+MoW/GroupAStreptococciD2- bigWig CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_reverse 1 2130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor2.CNhs13532.11874-125C2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11874-125C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_ctss_fwd Cd14+MoW/GroupAStreptococciD3+ bigWig CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_forward 0 2131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor3.CNhs13492.11884-125D3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11884-125D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_tpm_fwd Cd14+MoW/GroupAStreptococciD3+ bigWig CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_forward 1 2131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor3.CNhs13492.11884-125D3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11884-125D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_ctss_rev Cd14+MoW/GroupAStreptococciD3- bigWig CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_reverse 0 2132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor3.CNhs13492.11884-125D3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11884-125D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_tpm_rev Cd14+MoW/GroupAStreptococciD3- bigWig CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_reverse 1 2132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor3.CNhs13492.11884-125D3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11884-125D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_ctss_fwd Cd14+MoW/Ifn+N-hexaneD1+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_forward 0 2133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor1.CNhs13466.11861-125A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11861-125A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_tpm_fwd Cd14+MoW/Ifn+N-hexaneD1+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_forward 1 2133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor1.CNhs13466.11861-125A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11861-125A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_ctss_rev Cd14+MoW/Ifn+N-hexaneD1- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_reverse 0 2134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor1.CNhs13466.11861-125A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11861-125A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_tpm_rev Cd14+MoW/Ifn+N-hexaneD1- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_reverse 1 2134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor1.CNhs13466.11861-125A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11861-125A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_ctss_fwd Cd14+MoW/Ifn+N-hexaneD2+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_forward 0 2135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor2.CNhs13476.11871-125B8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11871-125B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_tpm_fwd Cd14+MoW/Ifn+N-hexaneD2+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_forward 1 2135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor2.CNhs13476.11871-125B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11871-125B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_ctss_rev Cd14+MoW/Ifn+N-hexaneD2- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_reverse 0 2136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor2.CNhs13476.11871-125B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11871-125B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_tpm_rev Cd14+MoW/Ifn+N-hexaneD2- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_reverse 1 2136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor2.CNhs13476.11871-125B8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11871-125B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_ctss_fwd Cd14+MoW/Ifn+N-hexaneD3+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_forward 0 2137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor3.CNhs13490.11881-125C9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11881-125C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_tpm_fwd Cd14+MoW/Ifn+N-hexaneD3+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_forward 1 2137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor3.CNhs13490.11881-125C9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11881-125C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_ctss_rev Cd14+MoW/Ifn+N-hexaneD3- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_reverse 0 2138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor3.CNhs13490.11881-125C9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11881-125C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_tpm_rev Cd14+MoW/Ifn+N-hexaneD3- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_reverse 1 2138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor3.CNhs13490.11881-125C9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11881-125C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_ctss_fwd Cd14+MoW/LipopolysaccharideD1+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_forward 0 2139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor1.CNhs13470.11865-125B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11865-125B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_tpm_fwd Cd14+MoW/LipopolysaccharideD1+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_forward 1 2139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor1.CNhs13470.11865-125B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11865-125B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_ctss_rev Cd14+MoW/LipopolysaccharideD1- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_reverse 0 2140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor1.CNhs13470.11865-125B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11865-125B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_tpm_rev Cd14+MoW/LipopolysaccharideD1- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_reverse 1 2140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor1.CNhs13470.11865-125B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11865-125B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_ctss_fwd Cd14+MoW/LipopolysaccharideD2+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_forward 0 2141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor2.CNhs13533.11875-125C3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11875-125C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_tpm_fwd Cd14+MoW/LipopolysaccharideD2+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_forward 1 2141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor2.CNhs13533.11875-125C3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11875-125C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_ctss_rev Cd14+MoW/LipopolysaccharideD2- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_reverse 0 2142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor2.CNhs13533.11875-125C3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11875-125C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_tpm_rev Cd14+MoW/LipopolysaccharideD2- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_reverse 1 2142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor2.CNhs13533.11875-125C3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11875-125C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_ctss_fwd Cd14+MoW/LipopolysaccharideD3+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_forward 0 2143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor3.CNhs13545.11885-125D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11885-125D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_tpm_fwd Cd14+MoW/LipopolysaccharideD3+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_forward 1 2143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor3.CNhs13545.11885-125D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11885-125D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_ctss_rev Cd14+MoW/LipopolysaccharideD3- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_reverse 0 2144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor3.CNhs13545.11885-125D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11885-125D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_tpm_rev Cd14+MoW/LipopolysaccharideD3- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_reverse 1 2144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor3.CNhs13545.11885-125D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11885-125D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_ctss_fwd Cd14+MoW/SalmonellaD1+ bigWig CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_forward 0 2145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor1.CNhs13471.11866-125B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11866-125B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_tpm_fwd Cd14+MoW/SalmonellaD1+ bigWig CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_forward 1 2145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor1.CNhs13471.11866-125B3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11866-125B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_ctss_rev Cd14+MoW/SalmonellaD1- bigWig CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_reverse 0 2146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor1.CNhs13471.11866-125B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11866-125B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_tpm_rev Cd14+MoW/SalmonellaD1- bigWig CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_reverse 1 2146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor1.CNhs13471.11866-125B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11866-125B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_ctss_fwd Cd14+MoW/SalmonellaD2+ bigWig CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_forward 0 2147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor2.CNhs13485.11876-125C4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11876-125C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_tpm_fwd Cd14+MoW/SalmonellaD2+ bigWig CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_forward 1 2147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor2.CNhs13485.11876-125C4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11876-125C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_ctss_rev Cd14+MoW/SalmonellaD2- bigWig CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_reverse 0 2148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor2.CNhs13485.11876-125C4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11876-125C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_tpm_rev Cd14+MoW/SalmonellaD2- bigWig CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_reverse 1 2148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor2.CNhs13485.11876-125C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11876-125C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_ctss_fwd Cd14+MoW/SalmonellaD3+ bigWig CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_forward 0 2149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor3.CNhs13493.11886-125D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11886-125D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_tpm_fwd Cd14+MoW/SalmonellaD3+ bigWig CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_forward 1 2149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor3.CNhs13493.11886-125D5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11886-125D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_ctss_rev Cd14+MoW/SalmonellaD3- bigWig CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_reverse 0 2150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor3.CNhs13493.11886-125D5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11886-125D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_tpm_rev Cd14+MoW/SalmonellaD3- bigWig CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_reverse 1 2150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor3.CNhs13493.11886-125D5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11886-125D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_ctss_fwd Cd14+MoW/TrehaloseDimycolateD1+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_forward 0 2151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor1.CNhs13467.11862-125A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11862-125A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_tpm_fwd Cd14+MoW/TrehaloseDimycolateD1+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_forward 1 2151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor1.CNhs13467.11862-125A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11862-125A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_ctss_rev Cd14+MoW/TrehaloseDimycolateD1- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_reverse 0 2152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor1.CNhs13467.11862-125A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11862-125A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_tpm_rev Cd14+MoW/TrehaloseDimycolateD1- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_reverse 1 2152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor1.CNhs13467.11862-125A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11862-125A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_ctss_fwd Cd14+MoW/TrehaloseDimycolateD2+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_forward 0 2153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor2.CNhs13483.11872-125B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11872-125B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_tpm_fwd Cd14+MoW/TrehaloseDimycolateD2+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_forward 1 2153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor2.CNhs13483.11872-125B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11872-125B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_ctss_rev Cd14+MoW/TrehaloseDimycolateD2- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_reverse 0 2154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor2.CNhs13483.11872-125B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11872-125B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_tpm_rev Cd14+MoW/TrehaloseDimycolateD2- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_reverse 1 2154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor2.CNhs13483.11872-125B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11872-125B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_ctss_fwd Cd14+MoW/TrehaloseDimycolateD3+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_forward 0 2155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor3.CNhs13544.11882-125D1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11882-125D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_tpm_fwd Cd14+MoW/TrehaloseDimycolateD3+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_forward 1 2155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor3.CNhs13544.11882-125D1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11882-125D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_ctss_rev Cd14+MoW/TrehaloseDimycolateD3- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_reverse 0 2156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor3.CNhs13544.11882-125D1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11882-125D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_tpm_rev Cd14+MoW/TrehaloseDimycolateD3- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_reverse 1 2156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor3.CNhs13544.11882-125D1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11882-125D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13207_ctss_fwd Cd14-cd16+MonocytesD2+ bigWig CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_forward 0 2157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor2.CNhs13207.11800-124C9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11800-124C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13207_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13207_tpm_fwd Cd14-cd16+MonocytesD2+ bigWig CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_forward 1 2157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor2.CNhs13207.11800-124C9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11800-124C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13207_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13207_ctss_rev Cd14-cd16+MonocytesD2- bigWig CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_reverse 0 2158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor2.CNhs13207.11800-124C9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11800-124C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13207_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13207_tpm_rev Cd14-cd16+MonocytesD2- bigWig CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_reverse 1 2158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor2.CNhs13207.11800-124C9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11800-124C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13207_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13548_ctss_fwd Cd14-cd16+MonocytesD3+ bigWig CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_forward 0 2159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor3.CNhs13548.11911-125G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11911-125G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13548_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13548_tpm_fwd Cd14-cd16+MonocytesD3+ bigWig CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_forward 1 2159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor3.CNhs13548.11911-125G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11911-125G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13548_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13548_ctss_rev Cd14-cd16+MonocytesD3- bigWig CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_reverse 0 2160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor3.CNhs13548.11911-125G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11911-125G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13548_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13548_tpm_rev Cd14-cd16+MonocytesD3- bigWig CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_reverse 1 2160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor3.CNhs13548.11911-125G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11911-125G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13548_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3\ urlLabel FANTOM5 Details:\ CD19BCellsDonor1_CNhs12343_ctss_fwd Cd19+BCellsD1+ bigWig CD19+ B Cells, donor1_CNhs12343_11544-120B5_forward 0 2161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%2c%20donor1.CNhs12343.11544-120B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor1_CNhs12343_11544-120B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11544-120B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor1_CNhs12343_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5\ urlLabel FANTOM5 Details:\ CD19BCellsDonor1_CNhs12343_tpm_fwd Cd19+BCellsD1+ bigWig CD19+ B Cells, donor1_CNhs12343_11544-120B5_forward 1 2161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%2c%20donor1.CNhs12343.11544-120B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor1_CNhs12343_11544-120B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11544-120B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor1_CNhs12343_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5\ urlLabel FANTOM5 Details:\ CD19BCellsDonor1_CNhs12343_ctss_rev Cd19+BCellsD1- bigWig CD19+ B Cells, donor1_CNhs12343_11544-120B5_reverse 0 2162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%2c%20donor1.CNhs12343.11544-120B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor1_CNhs12343_11544-120B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11544-120B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor1_CNhs12343_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5\ urlLabel FANTOM5 Details:\ CD19BCellsDonor1_CNhs12343_tpm_rev Cd19+BCellsD1- bigWig CD19+ B Cells, donor1_CNhs12343_11544-120B5_reverse 1 2162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%2c%20donor1.CNhs12343.11544-120B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor1_CNhs12343_11544-120B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11544-120B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor1_CNhs12343_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5\ urlLabel FANTOM5 Details:\ CD19BCellsDonor2_CNhs12352_ctss_fwd Cd19+BCellsD2+ bigWig CD19+ B Cells, donor2_CNhs12352_11624-122B4_forward 0 2163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%2c%20donor2.CNhs12352.11624-122B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor2_CNhs12352_11624-122B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11624-122B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor2_CNhs12352_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor2_CNhs12352_tpm_fwd Cd19+BCellsD2+ bigWig CD19+ B Cells, donor2_CNhs12352_11624-122B4_forward 1 2163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%2c%20donor2.CNhs12352.11624-122B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor2_CNhs12352_11624-122B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11624-122B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor2_CNhs12352_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor2_CNhs12352_ctss_rev Cd19+BCellsD2- bigWig CD19+ B Cells, donor2_CNhs12352_11624-122B4_reverse 0 2164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%2c%20donor2.CNhs12352.11624-122B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor2_CNhs12352_11624-122B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11624-122B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor2_CNhs12352_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor2_CNhs12352_tpm_rev Cd19+BCellsD2- bigWig CD19+ B Cells, donor2_CNhs12352_11624-122B4_reverse 1 2164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%2c%20donor2.CNhs12352.11624-122B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor2_CNhs12352_11624-122B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11624-122B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor2_CNhs12352_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor3_CNhs12354_ctss_fwd Cd19+BCellsD3+ bigWig CD19+ B Cells, donor3_CNhs12354_11705-123B4_forward 0 2165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%2c%20donor3.CNhs12354.11705-123B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor3_CNhs12354_11705-123B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11705-123B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor3_CNhs12354_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor3_CNhs12354_tpm_fwd Cd19+BCellsD3+ bigWig CD19+ B Cells, donor3_CNhs12354_11705-123B4_forward 1 2165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%2c%20donor3.CNhs12354.11705-123B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor3_CNhs12354_11705-123B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11705-123B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor3_CNhs12354_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor3_CNhs12354_ctss_rev Cd19+BCellsD3- bigWig CD19+ B Cells, donor3_CNhs12354_11705-123B4_reverse 0 2166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%2c%20donor3.CNhs12354.11705-123B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor3_CNhs12354_11705-123B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11705-123B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor3_CNhs12354_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor3_CNhs12354_tpm_rev Cd19+BCellsD3- bigWig CD19+ B Cells, donor3_CNhs12354_11705-123B4_reverse 1 2166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD19%2b%20B%20Cells%2c%20donor3.CNhs12354.11705-123B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor3_CNhs12354_11705-123B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11705-123B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor3_CNhs12354_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_ctss_fwd Cd34+StemCellsAdultBoneMarrowD1Tr1+ bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_forward 0 2167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep1.CNhs12588.12225-129F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_tpm_fwd Cd34+StemCellsAdultBoneMarrowD1Tr1+ bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_forward 1 2167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep1.CNhs12588.12225-129F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_ctss_rev Cd34+StemCellsAdultBoneMarrowD1Tr1- bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_reverse 0 2168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep1.CNhs12588.12225-129F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_tpm_rev Cd34+StemCellsAdultBoneMarrowD1Tr1- bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_reverse 1 2168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep1.CNhs12588.12225-129F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_ctss_fwd Cd34ErythrocyteBr1+ bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_forward 0 2169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep1.CNhs13552.11931-125I5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11931-125I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34ErythrocyteBr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_tpm_fwd Cd34ErythrocyteBr1+ bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_forward 1 2169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep1.CNhs13552.11931-125I5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11931-125I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34ErythrocyteBr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_ctss_rev Cd34ErythrocyteBr1- bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_reverse 0 2170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep1.CNhs13552.11931-125I5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11931-125I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34ErythrocyteBr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_tpm_rev Cd34ErythrocyteBr1- bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_reverse 1 2170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep1.CNhs13552.11931-125I5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11931-125I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34ErythrocyteBr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_ctss_fwd Cd34ErythrocyteBr2+ bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_forward 0 2171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep2.CNhs13553.11932-125I6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11932-125I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34ErythrocyteBr2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_tpm_fwd Cd34ErythrocyteBr2+ bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_forward 1 2171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep2.CNhs13553.11932-125I6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11932-125I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34ErythrocyteBr2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_ctss_rev Cd34ErythrocyteBr2- bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_reverse 0 2172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep2.CNhs13553.11932-125I6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11932-125I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34ErythrocyteBr2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_tpm_rev Cd34ErythrocyteBr2- bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_reverse 1 2172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep2.CNhs13553.11932-125I6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11932-125I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34ErythrocyteBr2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_ctss_fwd Cd4+cd25+cd45ra+D3+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_forward 0 2173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor3.CNhs13513.11907-125F8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11907-125F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_tpm_fwd Cd4+cd25+cd45ra+D3+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_forward 1 2173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor3.CNhs13513.11907-125F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11907-125F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_ctss_rev Cd4+cd25+cd45ra+D3- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_reverse 0 2174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor3.CNhs13513.11907-125F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11907-125F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_tpm_rev Cd4+cd25+cd45ra+D3- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_reverse 1 2174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor3.CNhs13513.11907-125F8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11907-125F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_ctss_fwd Cd4+cd25+cd45ra+ExpdD1+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_forward 0 2175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13203.11793-124C2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11793-124C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_tpm_fwd Cd4+cd25+cd45ra+ExpdD1+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_forward 1 2175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13203.11793-124C2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11793-124C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_ctss_rev Cd4+cd25+cd45ra+ExpdD1- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_reverse 0 2176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13203.11793-124C2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11793-124C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_tpm_rev Cd4+cd25+cd45ra+ExpdD1- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_reverse 1 2176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13203.11793-124C2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11793-124C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_ctss_fwd Cd4+cd25+cd45ra+ExpdD2+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_forward 0 2177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13918.11915-125G7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11915-125G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_tpm_fwd Cd4+cd25+cd45ra+ExpdD2+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_forward 1 2177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13918.11915-125G7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11915-125G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_ctss_rev Cd4+cd25+cd45ra+ExpdD2- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_reverse 0 2178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13918.11915-125G7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11915-125G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_tpm_rev Cd4+cd25+cd45ra+ExpdD2- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_reverse 1 2178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13918.11915-125G7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11915-125G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_ctss_fwd Cd4+cd25+cd45ra+ExpdD3+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_forward 0 2179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13919.11919-125H2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11919-125H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_tpm_fwd Cd4+cd25+cd45ra+ExpdD3+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_forward 1 2179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13919.11919-125H2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11919-125H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_ctss_rev Cd4+cd25+cd45ra+ExpdD3- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_reverse 0 2180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13919.11919-125H2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11919-125H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_tpm_rev Cd4+cd25+cd45ra+ExpdD3- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_reverse 1 2180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13919.11919-125H2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11919-125H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_ctss_fwd Cd4+cd25+cd45ra-D1+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_forward 0 2181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor1.CNhs13195.11782-124A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11782-124A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_tpm_fwd Cd4+cd25+cd45ra-D1+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_forward 1 2181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor1.CNhs13195.11782-124A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11782-124A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_ctss_rev Cd4+cd25+cd45ra-D1- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_reverse 0 2182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor1.CNhs13195.11782-124A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11782-124A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_tpm_rev Cd4+cd25+cd45ra-D1- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_reverse 1 2182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor1.CNhs13195.11782-124A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11782-124A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_ctss_fwd Cd4+cd25+cd45ra-D2+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_forward 0 2183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor2.CNhs13206.11797-124C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11797-124C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_tpm_fwd Cd4+cd25+cd45ra-D2+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_forward 1 2183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor2.CNhs13206.11797-124C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11797-124C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_ctss_rev Cd4+cd25+cd45ra-D2- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_reverse 0 2184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor2.CNhs13206.11797-124C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11797-124C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_tpm_rev Cd4+cd25+cd45ra-D2- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_reverse 1 2184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor2.CNhs13206.11797-124C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11797-124C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_ctss_fwd Cd4+cd25+cd45ra-D3+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_forward 0 2185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor3.CNhs13538.11908-125F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11908-125F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_tpm_fwd Cd4+cd25+cd45ra-D3+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_forward 1 2185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor3.CNhs13538.11908-125F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11908-125F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_ctss_rev Cd4+cd25+cd45ra-D3- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_reverse 0 2186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor3.CNhs13538.11908-125F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11908-125F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_tpm_rev Cd4+cd25+cd45ra-D3- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_reverse 1 2186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor3.CNhs13538.11908-125F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11908-125F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_ctss_fwd Cd4+cd25+cd45ra-ExpdD1+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_forward 0 2187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13204.11794-124C3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11794-124C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_tpm_fwd Cd4+cd25+cd45ra-ExpdD1+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_forward 1 2187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13204.11794-124C3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11794-124C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_ctss_rev Cd4+cd25+cd45ra-ExpdD1- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_reverse 0 2188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13204.11794-124C3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11794-124C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_tpm_rev Cd4+cd25+cd45ra-ExpdD1- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_reverse 1 2188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13204.11794-124C3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11794-124C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_ctss_fwd Cd4+cd25+cd45ra-ExpdD2+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_forward 0 2189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13811.11916-125G8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11916-125G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_tpm_fwd Cd4+cd25+cd45ra-ExpdD2+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_forward 1 2189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13811.11916-125G8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11916-125G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_ctss_rev Cd4+cd25+cd45ra-ExpdD2- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_reverse 0 2190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13811.11916-125G8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11916-125G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_tpm_rev Cd4+cd25+cd45ra-ExpdD2- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_reverse 1 2190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13811.11916-125G8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11916-125G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_ctss_fwd Cd4+cd25+cd45ra-ExpdD3+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_forward 0 2191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13812.11920-125H3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11920-125H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_tpm_fwd Cd4+cd25+cd45ra-ExpdD3+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_forward 1 2191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13812.11920-125H3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11920-125H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_ctss_rev Cd4+cd25+cd45ra-ExpdD3- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_reverse 0 2192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13812.11920-125H3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11920-125H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_tpm_rev Cd4+cd25+cd45ra-ExpdD3- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_reverse 1 2192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13812.11920-125H3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11920-125H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_ctss_fwd Cd4+cd25-cd45ra+D1+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_forward 0 2193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor1.CNhs13223.11784-124B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11784-124B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_tpm_fwd Cd4+cd25-cd45ra+D1+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_forward 1 2193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor1.CNhs13223.11784-124B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11784-124B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_ctss_rev Cd4+cd25-cd45ra+D1- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_reverse 0 2194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor1.CNhs13223.11784-124B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11784-124B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_tpm_rev Cd4+cd25-cd45ra+D1- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_reverse 1 2194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor1.CNhs13223.11784-124B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11784-124B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_ctss_fwd Cd4+cd25-cd45ra+D2+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_forward 0 2195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor2.CNhs13205.11795-124C4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11795-124C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_tpm_fwd Cd4+cd25-cd45ra+D2+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_forward 1 2195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor2.CNhs13205.11795-124C4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11795-124C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_ctss_rev Cd4+cd25-cd45ra+D2- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_reverse 0 2196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor2.CNhs13205.11795-124C4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11795-124C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_tpm_rev Cd4+cd25-cd45ra+D2- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_reverse 1 2196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor2.CNhs13205.11795-124C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11795-124C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_ctss_fwd Cd4+cd25-cd45ra+D3+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_forward 0 2197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor3.CNhs13512.11906-125F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11906-125F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_tpm_fwd Cd4+cd25-cd45ra+D3+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_forward 1 2197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor3.CNhs13512.11906-125F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11906-125F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_ctss_rev Cd4+cd25-cd45ra+D3- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_reverse 0 2198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor3.CNhs13512.11906-125F7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11906-125F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_tpm_rev Cd4+cd25-cd45ra+D3- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_reverse 1 2198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor3.CNhs13512.11906-125F7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11906-125F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_ctss_fwd Cd4+cd25-cd45ra+ExpdD1+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_forward 0 2199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13202.11791-124B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11791-124B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_tpm_fwd Cd4+cd25-cd45ra+ExpdD1+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_forward 1 2199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13202.11791-124B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11791-124B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_ctss_rev Cd4+cd25-cd45ra+ExpdD1- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_reverse 0 2200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13202.11791-124B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11791-124B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_tpm_rev Cd4+cd25-cd45ra+ExpdD1- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_reverse 1 2200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13202.11791-124B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11791-124B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_ctss_fwd Cd4+cd25-cd45ra+ExpdD2+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_forward 0 2201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13813.11913-125G5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11913-125G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_tpm_fwd Cd4+cd25-cd45ra+ExpdD2+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_forward 1 2201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13813.11913-125G5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11913-125G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_ctss_rev Cd4+cd25-cd45ra+ExpdD2- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_reverse 0 2202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13813.11913-125G5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11913-125G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_tpm_rev Cd4+cd25-cd45ra+ExpdD2- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_reverse 1 2202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13813.11913-125G5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11913-125G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_ctss_fwd Cd4+cd25-cd45ra+ExpdD3+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_forward 0 2203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13814.11917-125G9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11917-125G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_tpm_fwd Cd4+cd25-cd45ra+ExpdD3+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_forward 1 2203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13814.11917-125G9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11917-125G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_ctss_rev Cd4+cd25-cd45ra+ExpdD3- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_reverse 0 2204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13814.11917-125G9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11917-125G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_tpm_rev Cd4+cd25-cd45ra+ExpdD3- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_reverse 1 2204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13814.11917-125G9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11917-125G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_ctss_fwd Cd4+cd25-cd45ra-D3+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_forward 0 2205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor3.CNhs13539.11909-125G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11909-125G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_tpm_fwd Cd4+cd25-cd45ra-D3+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_forward 1 2205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor3.CNhs13539.11909-125G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11909-125G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_ctss_rev Cd4+cd25-cd45ra-D3- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_reverse 0 2206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor3.CNhs13539.11909-125G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11909-125G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_tpm_rev Cd4+cd25-cd45ra-D3- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_reverse 1 2206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor3.CNhs13539.11909-125G1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11909-125G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_ctss_fwd Cd4+cd25-cd45ra-ExpdD1+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_forward 0 2207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13215.11792-124C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11792-124C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_tpm_fwd Cd4+cd25-cd45ra-ExpdD1+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_forward 1 2207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13215.11792-124C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11792-124C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_ctss_rev Cd4+cd25-cd45ra-ExpdD1- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_reverse 0 2208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13215.11792-124C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11792-124C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_tpm_rev Cd4+cd25-cd45ra-ExpdD1- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_reverse 1 2208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13215.11792-124C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11792-124C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_ctss_fwd Cd4+cd25-cd45ra-ExpdD2+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_forward 0 2209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13920.11914-125G6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11914-125G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_tpm_fwd Cd4+cd25-cd45ra-ExpdD2+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_forward 1 2209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13920.11914-125G6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11914-125G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_ctss_rev Cd4+cd25-cd45ra-ExpdD2- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_reverse 0 2210 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13920.11914-125G6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11914-125G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_tpm_rev Cd4+cd25-cd45ra-ExpdD2- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_reverse 1 2210 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13920.11914-125G6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11914-125G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_ctss_fwd Cd4+cd25-cd45ra-ExpdD3+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_forward 0 2211 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13921.11918-125H1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11918-125H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_tpm_fwd Cd4+cd25-cd45ra-ExpdD3+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_forward 1 2211 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13921.11918-125H1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11918-125H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_ctss_rev Cd4+cd25-cd45ra-ExpdD3- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_reverse 0 2212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13921.11918-125H1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11918-125H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_tpm_rev Cd4+cd25-cd45ra-ExpdD3- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_reverse 1 2212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13921.11918-125H1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11918-125H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor1_CNhs10853_ctss_fwd Cd4+TCellsD1+ bigWig CD4+ T Cells, donor1_CNhs10853_11225-116C1_forward 0 2213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2b%20T%20Cells%2c%20donor1.CNhs10853.11225-116C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor1_CNhs10853_11225-116C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11225-116C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor1_CNhs10853_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor1_CNhs10853_tpm_fwd Cd4+TCellsD1+ bigWig CD4+ T Cells, donor1_CNhs10853_11225-116C1_forward 1 2213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2b%20T%20Cells%2c%20donor1.CNhs10853.11225-116C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor1_CNhs10853_11225-116C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11225-116C1 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor1_CNhs10853_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor1_CNhs10853_ctss_rev Cd4+TCellsD1- bigWig CD4+ T Cells, donor1_CNhs10853_11225-116C1_reverse 0 2214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2b%20T%20Cells%2c%20donor1.CNhs10853.11225-116C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor1_CNhs10853_11225-116C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11225-116C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor1_CNhs10853_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor1_CNhs10853_tpm_rev Cd4+TCellsD1- bigWig CD4+ T Cells, donor1_CNhs10853_11225-116C1_reverse 1 2214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2b%20T%20Cells%2c%20donor1.CNhs10853.11225-116C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor1_CNhs10853_11225-116C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11225-116C1 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor1_CNhs10853_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor2_CNhs11955_ctss_fwd Cd4+TCellsD2+ bigWig CD4+ T Cells, donor2_CNhs11955_11306-117C1_forward 0 2215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2b%20T%20Cells%2c%20donor2.CNhs11955.11306-117C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor2_CNhs11955_11306-117C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11306-117C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor2_CNhs11955_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor2_CNhs11955_tpm_fwd Cd4+TCellsD2+ bigWig CD4+ T Cells, donor2_CNhs11955_11306-117C1_forward 1 2215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2b%20T%20Cells%2c%20donor2.CNhs11955.11306-117C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor2_CNhs11955_11306-117C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11306-117C1 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor2_CNhs11955_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor2_CNhs11955_ctss_rev Cd4+TCellsD2- bigWig CD4+ T Cells, donor2_CNhs11955_11306-117C1_reverse 0 2216 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2b%20T%20Cells%2c%20donor2.CNhs11955.11306-117C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor2_CNhs11955_11306-117C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11306-117C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor2_CNhs11955_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor2_CNhs11955_tpm_rev Cd4+TCellsD2- bigWig CD4+ T Cells, donor2_CNhs11955_11306-117C1_reverse 1 2216 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2b%20T%20Cells%2c%20donor2.CNhs11955.11306-117C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor2_CNhs11955_11306-117C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11306-117C1 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor2_CNhs11955_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor3_CNhs11998_ctss_fwd Cd4+TCellsD3+ bigWig CD4+ T Cells, donor3_CNhs11998_11382-118B5_forward 0 2217 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2b%20T%20Cells%2c%20donor3.CNhs11998.11382-118B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor3_CNhs11998_11382-118B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11382-118B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor3_CNhs11998_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5\ urlLabel FANTOM5 Details:\ CD4TCellsDonor3_CNhs11998_tpm_fwd Cd4+TCellsD3+ bigWig CD4+ T Cells, donor3_CNhs11998_11382-118B5_forward 1 2217 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2b%20T%20Cells%2c%20donor3.CNhs11998.11382-118B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor3_CNhs11998_11382-118B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11382-118B5 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor3_CNhs11998_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5\ urlLabel FANTOM5 Details:\ CD4TCellsDonor3_CNhs11998_ctss_rev Cd4+TCellsD3- bigWig CD4+ T Cells, donor3_CNhs11998_11382-118B5_reverse 0 2218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2b%20T%20Cells%2c%20donor3.CNhs11998.11382-118B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor3_CNhs11998_11382-118B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11382-118B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor3_CNhs11998_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5\ urlLabel FANTOM5 Details:\ CD4TCellsDonor3_CNhs11998_tpm_rev Cd4+TCellsD3- bigWig CD4+ T Cells, donor3_CNhs11998_11382-118B5_reverse 1 2218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD4%2b%20T%20Cells%2c%20donor3.CNhs11998.11382-118B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor3_CNhs11998_11382-118B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11382-118B5 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor3_CNhs11998_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5\ urlLabel FANTOM5 Details:\ CD8TCellsDonor1_CNhs10854_ctss_fwd Cd8+TCellsD1+ bigWig CD8+ T Cells, donor1_CNhs10854_11226-116C2_forward 0 2219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%2c%20donor1.CNhs10854.11226-116C2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor1_CNhs10854_11226-116C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11226-116C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor1_CNhs10854_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor1_CNhs10854_tpm_fwd Cd8+TCellsD1+ bigWig CD8+ T Cells, donor1_CNhs10854_11226-116C2_forward 1 2219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%2c%20donor1.CNhs10854.11226-116C2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor1_CNhs10854_11226-116C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11226-116C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor1_CNhs10854_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor1_CNhs10854_ctss_rev Cd8+TCellsD1- bigWig CD8+ T Cells, donor1_CNhs10854_11226-116C2_reverse 0 2220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%2c%20donor1.CNhs10854.11226-116C2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor1_CNhs10854_11226-116C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11226-116C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor1_CNhs10854_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor1_CNhs10854_tpm_rev Cd8+TCellsD1- bigWig CD8+ T Cells, donor1_CNhs10854_11226-116C2_reverse 1 2220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%2c%20donor1.CNhs10854.11226-116C2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor1_CNhs10854_11226-116C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11226-116C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor1_CNhs10854_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor2_CNhs11956_ctss_fwd Cd8+TCellsD2+ bigWig CD8+ T Cells, donor2_CNhs11956_11307-117C2_forward 0 2221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%2c%20donor2.CNhs11956.11307-117C2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor2_CNhs11956_11307-117C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11307-117C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor2_CNhs11956_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor2_CNhs11956_tpm_fwd Cd8+TCellsD2+ bigWig CD8+ T Cells, donor2_CNhs11956_11307-117C2_forward 1 2221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%2c%20donor2.CNhs11956.11307-117C2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor2_CNhs11956_11307-117C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11307-117C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor2_CNhs11956_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor2_CNhs11956_ctss_rev Cd8+TCellsD2- bigWig CD8+ T Cells, donor2_CNhs11956_11307-117C2_reverse 0 2222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%2c%20donor2.CNhs11956.11307-117C2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor2_CNhs11956_11307-117C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11307-117C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor2_CNhs11956_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor2_CNhs11956_tpm_rev Cd8+TCellsD2- bigWig CD8+ T Cells, donor2_CNhs11956_11307-117C2_reverse 1 2222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%2c%20donor2.CNhs11956.11307-117C2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor2_CNhs11956_11307-117C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11307-117C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor2_CNhs11956_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor3_CNhs11999_ctss_fwd Cd8+TCellsD3+ bigWig CD8+ T Cells, donor3_CNhs11999_11383-118B6_forward 0 2223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%2c%20donor3.CNhs11999.11383-118B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor3_CNhs11999_11383-118B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11383-118B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor3_CNhs11999_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6\ urlLabel FANTOM5 Details:\ CD8TCellsDonor3_CNhs11999_tpm_fwd Cd8+TCellsD3+ bigWig CD8+ T Cells, donor3_CNhs11999_11383-118B6_forward 1 2223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%2c%20donor3.CNhs11999.11383-118B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor3_CNhs11999_11383-118B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11383-118B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor3_CNhs11999_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6\ urlLabel FANTOM5 Details:\ CD8TCellsDonor3_CNhs11999_ctss_rev Cd8+TCellsD3- bigWig CD8+ T Cells, donor3_CNhs11999_11383-118B6_reverse 0 2224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%2c%20donor3.CNhs11999.11383-118B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor3_CNhs11999_11383-118B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11383-118B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor3_CNhs11999_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6\ urlLabel FANTOM5 Details:\ CD8TCellsDonor3_CNhs11999_tpm_rev Cd8+TCellsD3- bigWig CD8+ T Cells, donor3_CNhs11999_11383-118B6_reverse 1 2224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/CD8%2b%20T%20Cells%2c%20donor3.CNhs11999.11383-118B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor3_CNhs11999_11383-118B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11383-118B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor3_CNhs11999_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor1_CNhs11923_ctss_fwd ChondrocyteDeDiffD1+ bigWig Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_forward 0 2225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor1.CNhs11923.11261-116G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11261-116G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor1_CNhs11923_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor1_CNhs11923_tpm_fwd ChondrocyteDeDiffD1+ bigWig Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_forward 1 2225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor1.CNhs11923.11261-116G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11261-116G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor1_CNhs11923_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor1_CNhs11923_ctss_rev ChondrocyteDeDiffD1- bigWig Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_reverse 0 2226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor1.CNhs11923.11261-116G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11261-116G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor1_CNhs11923_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor1_CNhs11923_tpm_rev ChondrocyteDeDiffD1- bigWig Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_reverse 1 2226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor1.CNhs11923.11261-116G1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11261-116G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor1_CNhs11923_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor2_CNhs11372_ctss_fwd ChondrocyteDeDiffD2+ bigWig Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_forward 0 2227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor2.CNhs11372.11338-117F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11338-117F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor2_CNhs11372_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor2_CNhs11372_tpm_fwd ChondrocyteDeDiffD2+ bigWig Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_forward 1 2227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor2.CNhs11372.11338-117F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11338-117F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor2_CNhs11372_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor2_CNhs11372_ctss_rev ChondrocyteDeDiffD2- bigWig Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_reverse 0 2228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor2.CNhs11372.11338-117F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11338-117F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor2_CNhs11372_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor2_CNhs11372_tpm_rev ChondrocyteDeDiffD2- bigWig Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_reverse 1 2228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor2.CNhs11372.11338-117F6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11338-117F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor2_CNhs11372_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor3_CNhs12020_ctss_fwd ChondrocyteDeDiffD3+ bigWig Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_forward 0 2229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor3.CNhs12020.11410-118E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11410-118E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor3_CNhs12020_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor3_CNhs12020_tpm_fwd ChondrocyteDeDiffD3+ bigWig Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_forward 1 2229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor3.CNhs12020.11410-118E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11410-118E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor3_CNhs12020_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor3_CNhs12020_ctss_rev ChondrocyteDeDiffD3- bigWig Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_reverse 0 2230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor3.CNhs12020.11410-118E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11410-118E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor3_CNhs12020_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor3_CNhs12020_tpm_rev ChondrocyteDeDiffD3- bigWig Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_reverse 1 2230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor3.CNhs12020.11410-118E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11410-118E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor3_CNhs12020_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor2_CNhs11373_ctss_fwd ChondrocyteReDiffD2+ bigWig Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_forward 0 2231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor2.CNhs11373.11339-117F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11339-117F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteReDiffD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteReDiffDonor2_CNhs11373_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor2_CNhs11373_tpm_fwd ChondrocyteReDiffD2+ bigWig Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_forward 1 2231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor2.CNhs11373.11339-117F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11339-117F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteReDiffD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteReDiffDonor2_CNhs11373_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor2_CNhs11373_ctss_rev ChondrocyteReDiffD2- bigWig Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_reverse 0 2232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor2.CNhs11373.11339-117F7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11339-117F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteReDiffD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteReDiffDonor2_CNhs11373_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor2_CNhs11373_tpm_rev ChondrocyteReDiffD2- bigWig Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_reverse 1 2232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor2.CNhs11373.11339-117F7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11339-117F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteReDiffD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteReDiffDonor2_CNhs11373_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor3_CNhs12021_ctss_fwd ChondrocyteReDiffD3+ bigWig Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_forward 0 2233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor3.CNhs12021.11411-118E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11411-118E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteReDiffD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteReDiffDonor3_CNhs12021_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor3_CNhs12021_tpm_fwd ChondrocyteReDiffD3+ bigWig Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_forward 1 2233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor3.CNhs12021.11411-118E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11411-118E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteReDiffD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteReDiffDonor3_CNhs12021_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor3_CNhs12021_ctss_rev ChondrocyteReDiffD3- bigWig Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_reverse 0 2234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor3.CNhs12021.11411-118E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11411-118E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteReDiffD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteReDiffDonor3_CNhs12021_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor3_CNhs12021_tpm_rev ChondrocyteReDiffD3- bigWig Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_reverse 1 2234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor3.CNhs12021.11411-118E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11411-118E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteReDiffD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteReDiffDonor3_CNhs12021_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor1_CNhs12504_ctss_fwd ChorionicMembraneCellsD1+ bigWig chorionic membrane cells, donor1_CNhs12504_12238-129G6_forward 0 2235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/chorionic%20membrane%20cells%2c%20donor1.CNhs12504.12238-129G6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor1_CNhs12504_12238-129G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12238-129G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor1_CNhs12504_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor1_CNhs12504_tpm_fwd ChorionicMembraneCellsD1+ bigWig chorionic membrane cells, donor1_CNhs12504_12238-129G6_forward 1 2235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/chorionic%20membrane%20cells%2c%20donor1.CNhs12504.12238-129G6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor1_CNhs12504_12238-129G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12238-129G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor1_CNhs12504_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor1_CNhs12504_ctss_rev ChorionicMembraneCellsD1- bigWig chorionic membrane cells, donor1_CNhs12504_12238-129G6_reverse 0 2236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/chorionic%20membrane%20cells%2c%20donor1.CNhs12504.12238-129G6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor1_CNhs12504_12238-129G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12238-129G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor1_CNhs12504_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor1_CNhs12504_tpm_rev ChorionicMembraneCellsD1- bigWig chorionic membrane cells, donor1_CNhs12504_12238-129G6_reverse 1 2236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/chorionic%20membrane%20cells%2c%20donor1.CNhs12504.12238-129G6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor1_CNhs12504_12238-129G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12238-129G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor1_CNhs12504_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor2_CNhs12506_ctss_fwd ChorionicMembraneCellsD2+ bigWig chorionic membrane cells, donor2_CNhs12506_12239-129G7_forward 0 2237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/chorionic%20membrane%20cells%2c%20donor2.CNhs12506.12239-129G7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor2_CNhs12506_12239-129G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12239-129G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor2_CNhs12506_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor2_CNhs12506_tpm_fwd ChorionicMembraneCellsD2+ bigWig chorionic membrane cells, donor2_CNhs12506_12239-129G7_forward 1 2237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/chorionic%20membrane%20cells%2c%20donor2.CNhs12506.12239-129G7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor2_CNhs12506_12239-129G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12239-129G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor2_CNhs12506_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor2_CNhs12506_ctss_rev ChorionicMembraneCellsD2- bigWig chorionic membrane cells, donor2_CNhs12506_12239-129G7_reverse 0 2238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/chorionic%20membrane%20cells%2c%20donor2.CNhs12506.12239-129G7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor2_CNhs12506_12239-129G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12239-129G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor2_CNhs12506_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor2_CNhs12506_tpm_rev ChorionicMembraneCellsD2- bigWig chorionic membrane cells, donor2_CNhs12506_12239-129G7_reverse 1 2238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/chorionic%20membrane%20cells%2c%20donor2.CNhs12506.12239-129G7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor2_CNhs12506_12239-129G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12239-129G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor2_CNhs12506_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor3_CNhs12380_ctss_fwd ChorionicMembraneCellsD3+ bigWig chorionic membrane cells, donor3_CNhs12380_12240-129G8_forward 0 2239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/chorionic%20membrane%20cells%2c%20donor3.CNhs12380.12240-129G8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor3_CNhs12380_12240-129G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12240-129G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor3_CNhs12380_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor3_CNhs12380_tpm_fwd ChorionicMembraneCellsD3+ bigWig chorionic membrane cells, donor3_CNhs12380_12240-129G8_forward 1 2239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/chorionic%20membrane%20cells%2c%20donor3.CNhs12380.12240-129G8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor3_CNhs12380_12240-129G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12240-129G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor3_CNhs12380_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor3_CNhs12380_ctss_rev ChorionicMembraneCellsD3- bigWig chorionic membrane cells, donor3_CNhs12380_12240-129G8_reverse 0 2240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/chorionic%20membrane%20cells%2c%20donor3.CNhs12380.12240-129G8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor3_CNhs12380_12240-129G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12240-129G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor3_CNhs12380_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor3_CNhs12380_tpm_rev ChorionicMembraneCellsD3- bigWig chorionic membrane cells, donor3_CNhs12380_12240-129G8_reverse 1 2240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/chorionic%20membrane%20cells%2c%20donor3.CNhs12380.12240-129G8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor3_CNhs12380_12240-129G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12240-129G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor3_CNhs12380_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor1_CNhs10871_ctss_fwd CiliaryEpithelialCellsD1+ bigWig Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_forward 0 2241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor1.CNhs10871.11242-116D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11242-116D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor1_CNhs10871_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor1_CNhs10871_tpm_fwd CiliaryEpithelialCellsD1+ bigWig Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_forward 1 2241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor1.CNhs10871.11242-116D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11242-116D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor1_CNhs10871_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor1_CNhs10871_ctss_rev CiliaryEpithelialCellsD1- bigWig Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_reverse 0 2242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor1.CNhs10871.11242-116D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11242-116D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor1_CNhs10871_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor1_CNhs10871_tpm_rev CiliaryEpithelialCellsD1- bigWig Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_reverse 1 2242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor1.CNhs10871.11242-116D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11242-116D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor1_CNhs10871_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor2_CNhs11966_ctss_fwd CiliaryEpithelialCellsD2+ bigWig Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_forward 0 2243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor2.CNhs11966.11323-117D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11323-117D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor2_CNhs11966_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor2_CNhs11966_tpm_fwd CiliaryEpithelialCellsD2+ bigWig Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_forward 1 2243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor2.CNhs11966.11323-117D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11323-117D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor2_CNhs11966_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor2_CNhs11966_ctss_rev CiliaryEpithelialCellsD2- bigWig Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_reverse 0 2244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor2.CNhs11966.11323-117D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11323-117D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor2_CNhs11966_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor2_CNhs11966_tpm_rev CiliaryEpithelialCellsD2- bigWig Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_reverse 1 2244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor2.CNhs11966.11323-117D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11323-117D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor2_CNhs11966_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor3_CNhs12009_ctss_fwd CiliaryEpithelialCellsD3+ bigWig Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_forward 0 2245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor3.CNhs12009.11399-118D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11399-118D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor3_CNhs12009_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor3_CNhs12009_tpm_fwd CiliaryEpithelialCellsD3+ bigWig Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_forward 1 2245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor3.CNhs12009.11399-118D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11399-118D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor3_CNhs12009_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor3_CNhs12009_ctss_rev CiliaryEpithelialCellsD3- bigWig Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_reverse 0 2246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor3.CNhs12009.11399-118D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11399-118D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor3_CNhs12009_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor3_CNhs12009_tpm_rev CiliaryEpithelialCellsD3- bigWig Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_reverse 1 2246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor3.CNhs12009.11399-118D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11399-118D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor3_CNhs12009_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor1_CNhs11336_ctss_fwd CornealEpithelialCellsD1+ bigWig Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_forward 0 2247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Corneal%20Epithelial%20Cells%2c%20donor1.CNhs11336.11526-119I5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11526-119I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CornealEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CornealEpithelialCellsDonor1_CNhs11336_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor1_CNhs11336_tpm_fwd CornealEpithelialCellsD1+ bigWig Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_forward 1 2247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Corneal%20Epithelial%20Cells%2c%20donor1.CNhs11336.11526-119I5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_forward\ 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strand=reverse\ track DendriticCellsPlasmacytoidDonor1_CNhs10857_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11228-116C4\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor1_CNhs10857_tpm_rev DendriticCellsPlasmacytoidD1- bigWig Dendritic Cells - plasmacytoid, donor1_CNhs10857_11228-116C4_reverse 1 2260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11228-116C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor1.CNhs10857.11228-116C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - plasmacytoid, donor1_CNhs10857_11228-116C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11228-116C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsPlasmacytoidD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track DendriticCellsPlasmacytoidDonor1_CNhs10857_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11228-116C4\ urlLabel FANTOM5 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0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11207-116A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor0.CNhs10837.11207-116A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Aortic, donor0_CNhs10837_11207-116A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11207-116A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsAorticD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsAorticDonor0_CNhs10837_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11207-116A1\ urlLabel FANTOM5 Details:\ EndothelialCellsAorticDonor0_CNhs10837_ctss_rev EndothelialCellsAorticD0- bigWig Endothelial Cells - Aortic, donor0_CNhs10837_11207-116A1_reverse 0 2262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11207-116A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor0.CNhs10837.11207-116A1.hg19.ctss.rev.bw\ color 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type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11263-116G3\ urlLabel FANTOM5 Details:\ EndothelialCellsAorticDonor1_CNhs12495_tpm_fwd EndothelialCellsAorticD1+ bigWig Endothelial Cells - Aortic, donor1_CNhs12495_11263-116G3_forward 1 2263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11263-116G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor1.CNhs12495.11263-116G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Aortic, donor1_CNhs12495_11263-116G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11263-116G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsAorticD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsAorticDonor1_CNhs12495_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11263-116G3\ urlLabel FANTOM5 Details:\ EndothelialCellsAorticDonor1_CNhs12495_ctss_rev EndothelialCellsAorticD1- bigWig Endothelial Cells - Aortic, donor1_CNhs12495_11263-116G3_reverse 0 2264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11263-116G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor1.CNhs12495.11263-116G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Aortic, donor1_CNhs12495_11263-116G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11263-116G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsAorticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsAorticDonor1_CNhs12495_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11263-116G3\ urlLabel FANTOM5 Details:\ EndothelialCellsAorticDonor1_CNhs12495_tpm_rev EndothelialCellsAorticD1- bigWig Endothelial Cells - Aortic, donor1_CNhs12495_11263-116G3_reverse 1 2264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11263-116G3 regulation 0 bigDataUrl 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subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsAorticDonor2_CNhs11375_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11340-117F8\ urlLabel FANTOM5 Details:\ EndothelialCellsAorticDonor2_CNhs11375_ctss_rev EndothelialCellsAorticD2- bigWig Endothelial Cells - Aortic, donor2_CNhs11375_11340-117F8_reverse 0 2266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11340-117F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor2.CNhs11375.11340-117F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Aortic, donor2_CNhs11375_11340-117F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11340-117F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsAorticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsAorticDonor2_CNhs11375_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11340-117F8\ urlLabel FANTOM5 Details:\ EndothelialCellsAorticDonor2_CNhs11375_tpm_rev EndothelialCellsAorticD2- bigWig Endothelial Cells - Aortic, donor2_CNhs11375_11340-117F8_reverse 1 2266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11340-117F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor2.CNhs11375.11340-117F8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Aortic, donor2_CNhs11375_11340-117F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11340-117F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsAorticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsAorticDonor2_CNhs11375_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11340-117F8\ urlLabel FANTOM5 Details:\ EndothelialCellsAorticDonor3_CNhs12022_ctss_fwd EndothelialCellsAorticD3+ bigWig Endothelial Cells - Aortic, donor3_CNhs12022_11412-118E8_forward 0 2267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11412-118E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor3.CNhs12022.11412-118E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Aortic, donor3_CNhs12022_11412-118E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11412-118E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsAorticD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsAorticDonor3_CNhs12022_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11412-118E8\ urlLabel FANTOM5 Details:\ EndothelialCellsAorticDonor3_CNhs12022_tpm_fwd EndothelialCellsAorticD3+ bigWig Endothelial Cells - Aortic, donor3_CNhs12022_11412-118E8_forward 1 2267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11412-118E8 regulation 0 bigDataUrl 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http://fantom.gsc.riken.jp/5/sstar/FF:11264-116G4\ urlLabel FANTOM5 Details:\ EndothelialCellsArteryDonor1_CNhs12496_tpm_fwd EndothelialCellsArteryD1+ bigWig Endothelial Cells - Artery, donor1_CNhs12496_11264-116G4_forward 1 2269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11264-116G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Artery%2c%20donor1.CNhs12496.11264-116G4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Artery, donor1_CNhs12496_11264-116G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11264-116G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsArteryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsArteryDonor1_CNhs12496_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11264-116G4\ urlLabel FANTOM5 Details:\ EndothelialCellsArteryDonor1_CNhs12496_ctss_rev EndothelialCellsArteryD1- bigWig Endothelial Cells - Artery, 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Endothelial Cells - Lymphatic, donor1_CNhs10865_11236-116D3_reverse 0 2276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11236-116D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Lymphatic%2c%20donor1.CNhs10865.11236-116D3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Lymphatic, donor1_CNhs10865_11236-116D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11236-116D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsLymphaticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsLymphaticDonor1_CNhs10865_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11236-116D3\ urlLabel FANTOM5 Details:\ EndothelialCellsLymphaticDonor1_CNhs10865_tpm_rev EndothelialCellsLymphaticD1- bigWig Endothelial Cells - Lymphatic, donor1_CNhs10865_11236-116D3_reverse 1 2276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11236-116D3 regulation 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shortLabel EndothelialCellsLymphaticD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsLymphaticDonor2_CNhs11901_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11317-117D3\ urlLabel FANTOM5 Details:\ EndothelialCellsLymphaticDonor2_CNhs11901_ctss_rev EndothelialCellsLymphaticD2- bigWig Endothelial Cells - Lymphatic, donor2_CNhs11901_11317-117D3_reverse 0 2278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11317-117D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Lymphatic%2c%20donor2.CNhs11901.11317-117D3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Lymphatic, donor2_CNhs11901_11317-117D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11317-117D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsLymphaticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsLymphaticDonor2_CNhs11901_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11317-117D3\ urlLabel FANTOM5 Details:\ EndothelialCellsLymphaticDonor2_CNhs11901_tpm_rev EndothelialCellsLymphaticD2- bigWig Endothelial Cells - Lymphatic, donor2_CNhs11901_11317-117D3_reverse 1 2278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11317-117D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Lymphatic%2c%20donor2.CNhs11901.11317-117D3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Lymphatic, donor2_CNhs11901_11317-117D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11317-117D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsLymphaticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsLymphaticDonor2_CNhs11901_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11317-117D3\ urlLabel FANTOM5 Details:\ EndothelialCellsLymphaticDonor3_CNhs11906_ctss_fwd EndothelialCellsLymphaticD3+ bigWig Endothelial Cells - Lymphatic, donor3_CNhs11906_11393-118C7_forward 0 2279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11393-118C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Lymphatic%2c%20donor3.CNhs11906.11393-118C7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Lymphatic, donor3_CNhs11906_11393-118C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11393-118C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsLymphaticD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsLymphaticDonor3_CNhs11906_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11393-118C7\ urlLabel FANTOM5 Details:\ EndothelialCellsLymphaticDonor3_CNhs11906_tpm_fwd EndothelialCellsLymphaticD3+ bigWig Endothelial Cells - Lymphatic, donor3_CNhs11906_11393-118C7_forward 1 2279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11393-118C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Lymphatic%2c%20donor3.CNhs11906.11393-118C7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Lymphatic, donor3_CNhs11906_11393-118C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11393-118C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsLymphaticD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsLymphaticDonor3_CNhs11906_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11393-118C7\ urlLabel FANTOM5 Details:\ EndothelialCellsLymphaticDonor3_CNhs11906_ctss_rev EndothelialCellsLymphaticD3- bigWig Endothelial Cells - Lymphatic, donor3_CNhs11906_11393-118C7_reverse 0 2280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11393-118C7 regulation 0 bigDataUrl 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regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Umbilical%20vein%2c%20donor2.CNhs11967.11324-117E1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Umbilical vein, donor2_CNhs11967_11324-117E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11324-117E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsUmbilicalVeinD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsUmbilicalVeinDonor2_CNhs11967_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11324-117E1\ urlLabel FANTOM5 Details:\ EndothelialCellsUmbilicalVeinDonor3_CNhs12010_ctss_fwd EndothelialCellsUmbilicalVeinD3+ bigWig Endothelial Cells - Umbilical vein, donor3_CNhs12010_11400-118D5_forward 0 2295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11400-118D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Umbilical%20vein%2c%20donor3.CNhs12010.11400-118D5.hg19.ctss.fwd.bw\ 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bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11400-118D5\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor1_CNhs12497_ctss_fwd EndothelialCellsVeinD1+ bigWig Endothelial Cells - Vein, donor1_CNhs12497_11267-116G7_forward 0 2297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11267-116G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor1.CNhs12497.11267-116G7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Vein, donor1_CNhs12497_11267-116G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11267-116G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsVeinD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsVeinDonor1_CNhs12497_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11267-116G7\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor1_CNhs12497_tpm_fwd EndothelialCellsVeinD1+ bigWig Endothelial Cells - Vein, donor1_CNhs12497_11267-116G7_forward 1 2297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11267-116G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor1.CNhs12497.11267-116G7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Vein, donor1_CNhs12497_11267-116G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11267-116G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsVeinD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsVeinDonor1_CNhs12497_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11267-116G7\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor1_CNhs12497_ctss_rev EndothelialCellsVeinD1- bigWig Endothelial Cells - Vein, donor1_CNhs12497_11267-116G7_reverse 0 2298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11267-116G7 regulation 0 bigDataUrl 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maxHeightPixels 100:8:8\ metadata ontology_id=11267-116G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsVeinD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsVeinDonor1_CNhs12497_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11267-116G7\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor2_CNhs11377_ctss_fwd EndothelialCellsVeinD2+ bigWig Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_forward 0 2299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor2.CNhs11377.11344-117G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11344-117G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsVeinD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsVeinDonor2_CNhs11377_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor2_CNhs11377_tpm_fwd EndothelialCellsVeinD2+ bigWig Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_forward 1 2299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor2.CNhs11377.11344-117G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11344-117G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsVeinD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsVeinDonor2_CNhs11377_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor2_CNhs11377_ctss_rev EndothelialCellsVeinD2- bigWig Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_reverse 0 2300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor2.CNhs11377.11344-117G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11344-117G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsVeinD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsVeinDonor2_CNhs11377_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor2_CNhs11377_tpm_rev EndothelialCellsVeinD2- bigWig Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_reverse 1 2300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor2.CNhs11377.11344-117G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11344-117G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsVeinD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsVeinDonor2_CNhs11377_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor3_CNhs12026_ctss_fwd EndothelialCellsVeinD3+ bigWig Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_forward 0 2301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor3.CNhs12026.11416-118F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11416-118F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsVeinD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsVeinDonor3_CNhs12026_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor3_CNhs12026_tpm_fwd EndothelialCellsVeinD3+ bigWig Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_forward 1 2301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor3.CNhs12026.11416-118F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11416-118F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsVeinD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsVeinDonor3_CNhs12026_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor3_CNhs12026_ctss_rev EndothelialCellsVeinD3- bigWig Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_reverse 0 2302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor3.CNhs12026.11416-118F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11416-118F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsVeinD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsVeinDonor3_CNhs12026_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor3_CNhs12026_tpm_rev EndothelialCellsVeinD3- bigWig Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_reverse 1 2302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor3.CNhs12026.11416-118F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11416-118F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsVeinD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsVeinDonor3_CNhs12026_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor1_CNhs11323_ctss_fwd EsophagealEpithelialCellsD1+ bigWig Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_forward 0 2303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor1.CNhs11323.11507-119G4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11507-119G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor1_CNhs11323_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor1_CNhs11323_tpm_fwd EsophagealEpithelialCellsD1+ bigWig Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_forward 1 2303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor1.CNhs11323.11507-119G4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11507-119G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor1_CNhs11323_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor1_CNhs11323_ctss_rev EsophagealEpithelialCellsD1- bigWig Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_reverse 0 2304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor1.CNhs11323.11507-119G4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11507-119G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor1_CNhs11323_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor1_CNhs11323_tpm_rev EsophagealEpithelialCellsD1- bigWig Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_reverse 1 2304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor1.CNhs11323.11507-119G4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11507-119G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor1_CNhs11323_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor2_CNhs12083_ctss_fwd EsophagealEpithelialCellsD2+ bigWig Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_forward 0 2305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor2.CNhs12083.11587-120G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11587-120G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor2_CNhs12083_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor2_CNhs12083_tpm_fwd EsophagealEpithelialCellsD2+ bigWig Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_forward 1 2305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor2.CNhs12083.11587-120G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11587-120G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor2_CNhs12083_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor2_CNhs12083_ctss_rev EsophagealEpithelialCellsD2- bigWig Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_reverse 0 2306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor2.CNhs12083.11587-120G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11587-120G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor2_CNhs12083_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor2_CNhs12083_tpm_rev EsophagealEpithelialCellsD2- bigWig Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_reverse 1 2306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor2.CNhs12083.11587-120G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11587-120G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor2_CNhs12083_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor3_CNhs12622_ctss_fwd EsophagealEpithelialCellsD3+ bigWig Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_forward 0 2307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor3.CNhs12622.11668-122G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11668-122G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor3_CNhs12622_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor3_CNhs12622_tpm_fwd EsophagealEpithelialCellsD3+ bigWig Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_forward 1 2307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor3.CNhs12622.11668-122G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11668-122G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor3_CNhs12622_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor3_CNhs12622_ctss_rev EsophagealEpithelialCellsD3- bigWig Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_reverse 0 2308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor3.CNhs12622.11668-122G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11668-122G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor3_CNhs12622_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor3_CNhs12622_tpm_rev EsophagealEpithelialCellsD3- bigWig Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_reverse 1 2308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor3.CNhs12622.11668-122G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11668-122G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor3_CNhs12622_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor1_CNhs10874_ctss_fwd FibroAorticAdventitialD1+ bigWig Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_forward 0 2309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor1.CNhs10874.11245-116E3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11245-116E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor1_CNhs10874_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor1_CNhs10874_tpm_fwd FibroAorticAdventitialD1+ bigWig Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_forward 1 2309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor1.CNhs10874.11245-116E3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11245-116E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor1_CNhs10874_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor1_CNhs10874_ctss_rev FibroAorticAdventitialD1- bigWig Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_reverse 0 2310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor1.CNhs10874.11245-116E3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11245-116E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor1_CNhs10874_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor1_CNhs10874_tpm_rev FibroAorticAdventitialD1- bigWig Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_reverse 1 2310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor1.CNhs10874.11245-116E3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11245-116E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor1_CNhs10874_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor2_CNhs11968_ctss_fwd FibroAorticAdventitialD2+ bigWig Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_forward 0 2311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor2.CNhs11968.11326-117E3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11326-117E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor2_CNhs11968_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor2_CNhs11968_tpm_fwd FibroAorticAdventitialD2+ bigWig Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_forward 1 2311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor2.CNhs11968.11326-117E3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11326-117E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor2_CNhs11968_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor2_CNhs11968_ctss_rev FibroAorticAdventitialD2- bigWig Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_reverse 0 2312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor2.CNhs11968.11326-117E3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11326-117E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor2_CNhs11968_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor2_CNhs11968_tpm_rev FibroAorticAdventitialD2- bigWig Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_reverse 1 2312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor2.CNhs11968.11326-117E3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11326-117E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor2_CNhs11968_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor3_CNhs12011_ctss_fwd FibroAorticAdventitialD3+ bigWig Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_forward 0 2313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor3.CNhs12011.11401-118D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11401-118D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor3_CNhs12011_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor3_CNhs12011_tpm_fwd FibroAorticAdventitialD3+ bigWig Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_forward 1 2313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor3.CNhs12011.11401-118D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11401-118D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor3_CNhs12011_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor3_CNhs12011_ctss_rev FibroAorticAdventitialD3- bigWig Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_reverse 0 2314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor3.CNhs12011.11401-118D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11401-118D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor3_CNhs12011_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor3_CNhs12011_tpm_rev FibroAorticAdventitialD3- bigWig Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_reverse 1 2314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor3.CNhs12011.11401-118D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11401-118D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor3_CNhs12011_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor1_CNhs12498_ctss_fwd FibroCardiacD1+ bigWig Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_forward 0 2315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor1.CNhs12498.11268-116G8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11268-116G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor1_CNhs12498_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor1_CNhs12498_tpm_fwd FibroCardiacD1+ bigWig Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_forward 1 2315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor1.CNhs12498.11268-116G8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11268-116G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor1_CNhs12498_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor1_CNhs12498_ctss_rev FibroCardiacD1- bigWig Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_reverse 0 2316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor1.CNhs12498.11268-116G8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11268-116G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor1_CNhs12498_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor1_CNhs12498_tpm_rev FibroCardiacD1- bigWig Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_reverse 1 2316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor1.CNhs12498.11268-116G8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11268-116G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor1_CNhs12498_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor2_CNhs11378_ctss_fwd FibroCardiacD2+ bigWig Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_forward 0 2317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor2.CNhs11378.11345-117G4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11345-117G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor2_CNhs11378_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor2_CNhs11378_tpm_fwd FibroCardiacD2+ bigWig Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_forward 1 2317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor2.CNhs11378.11345-117G4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11345-117G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor2_CNhs11378_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor2_CNhs11378_ctss_rev FibroCardiacD2- bigWig Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_reverse 0 2318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor2.CNhs11378.11345-117G4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11345-117G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor2_CNhs11378_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor2_CNhs11378_tpm_rev FibroCardiacD2- bigWig Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_reverse 1 2318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor2.CNhs11378.11345-117G4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11345-117G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor2_CNhs11378_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor3_CNhs12027_ctss_fwd FibroCardiacD3+ bigWig Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_forward 0 2319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor3.CNhs12027.11417-118F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11417-118F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor3_CNhs12027_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor3_CNhs12027_tpm_fwd FibroCardiacD3+ bigWig Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_forward 1 2319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor3.CNhs12027.11417-118F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11417-118F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor3_CNhs12027_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor3_CNhs12027_ctss_rev FibroCardiacD3- bigWig Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_reverse 0 2320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor3.CNhs12027.11417-118F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11417-118F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor3_CNhs12027_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor3_CNhs12027_tpm_rev FibroCardiacD3- bigWig Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_reverse 1 2320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor3.CNhs12027.11417-118F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11417-118F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor3_CNhs12027_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor4_CNhs11909_ctss_fwd FibroCardiacD4+ bigWig Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_forward 0 2321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor4.CNhs11909.11452-119A3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11452-119A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor4_CNhs11909_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor4_CNhs11909_tpm_fwd FibroCardiacD4+ bigWig Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_forward 1 2321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor4.CNhs11909.11452-119A3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11452-119A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor4_CNhs11909_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor4_CNhs11909_ctss_rev FibroCardiacD4- bigWig Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_reverse 0 2322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor4.CNhs11909.11452-119A3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11452-119A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor4_CNhs11909_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor4_CNhs11909_tpm_rev FibroCardiacD4- bigWig Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_reverse 1 2322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor4.CNhs11909.11452-119A3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11452-119A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor4_CNhs11909_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor5_CNhs12057_ctss_fwd FibroCardiacD5+ bigWig Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_forward 0 2323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor5.CNhs12057.11456-119A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11456-119A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor5_CNhs12057_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor5_CNhs12057_tpm_fwd FibroCardiacD5+ bigWig Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_forward 1 2323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor5.CNhs12057.11456-119A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11456-119A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor5_CNhs12057_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor5_CNhs12057_ctss_rev FibroCardiacD5- bigWig Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_reverse 0 2324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor5.CNhs12057.11456-119A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11456-119A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor5_CNhs12057_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor5_CNhs12057_tpm_rev FibroCardiacD5- bigWig Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_reverse 1 2324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor5.CNhs12057.11456-119A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11456-119A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor5_CNhs12057_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor6_CNhs12061_ctss_fwd FibroCardiacD6+ bigWig Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_forward 0 2325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor6.CNhs12061.11460-119B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11460-119B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor6_CNhs12061_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor6_CNhs12061_tpm_fwd FibroCardiacD6+ bigWig Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_forward 1 2325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor6.CNhs12061.11460-119B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11460-119B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor6_CNhs12061_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor6_CNhs12061_ctss_rev FibroCardiacD6- bigWig Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_reverse 0 2326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor6.CNhs12061.11460-119B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11460-119B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor6_CNhs12061_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor6_CNhs12061_tpm_rev FibroCardiacD6- bigWig Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_reverse 1 2326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Cardiac%2c%20donor6.CNhs12061.11460-119B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11460-119B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor6_CNhs12061_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor1_CNhs11319_ctss_fwd FibroChoroidPlexusD1+ bigWig Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_forward 0 2327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor1.CNhs11319.11492-119E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11492-119E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor1_CNhs11319_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor1_CNhs11319_tpm_fwd FibroChoroidPlexusD1+ bigWig Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_forward 1 2327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor1.CNhs11319.11492-119E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11492-119E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor1_CNhs11319_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor1_CNhs11319_ctss_rev FibroChoroidPlexusD1- bigWig Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_reverse 0 2328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor1.CNhs11319.11492-119E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11492-119E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor1_CNhs11319_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor1_CNhs11319_tpm_rev FibroChoroidPlexusD1- bigWig Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_reverse 1 2328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor1.CNhs11319.11492-119E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11492-119E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor1_CNhs11319_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor2_CNhs12344_ctss_fwd FibroChoroidPlexusD2+ bigWig Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_forward 0 2329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor2.CNhs12344.11572-120E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11572-120E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor2_CNhs12344_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor2_CNhs12344_tpm_fwd FibroChoroidPlexusD2+ bigWig Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_forward 1 2329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor2.CNhs12344.11572-120E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11572-120E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor2_CNhs12344_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor2_CNhs12344_ctss_rev FibroChoroidPlexusD2- bigWig Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_reverse 0 2330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor2.CNhs12344.11572-120E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11572-120E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor2_CNhs12344_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor2_CNhs12344_tpm_rev FibroChoroidPlexusD2- bigWig Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_reverse 1 2330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor2.CNhs12344.11572-120E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11572-120E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor2_CNhs12344_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor3_CNhs12620_ctss_fwd FibroChoroidPlexusD3+ bigWig Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_forward 0 2331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor3.CNhs12620.11653-122E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11653-122E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor3_CNhs12620_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor3_CNhs12620_tpm_fwd FibroChoroidPlexusD3+ bigWig Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_forward 1 2331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor3.CNhs12620.11653-122E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11653-122E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor3_CNhs12620_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor3_CNhs12620_ctss_rev FibroChoroidPlexusD3- bigWig Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_reverse 0 2332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor3.CNhs12620.11653-122E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11653-122E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor3_CNhs12620_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor3_CNhs12620_tpm_rev FibroChoroidPlexusD3- bigWig Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_reverse 1 2332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor3.CNhs12620.11653-122E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11653-122E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor3_CNhs12620_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor1_CNhs11339_ctss_fwd FibroConjunctivalD1+ bigWig Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_forward 0 2333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor1.CNhs11339.11531-120A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11531-120A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroConjunctivalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastConjunctivalDonor1_CNhs11339_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor1_CNhs11339_tpm_fwd FibroConjunctivalD1+ bigWig Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_forward 1 2333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor1.CNhs11339.11531-120A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11531-120A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroConjunctivalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastConjunctivalDonor1_CNhs11339_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor1_CNhs11339_ctss_rev FibroConjunctivalD1- bigWig Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_reverse 0 2334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor1.CNhs11339.11531-120A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11531-120A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroConjunctivalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastConjunctivalDonor1_CNhs11339_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor1_CNhs11339_tpm_rev FibroConjunctivalD1- bigWig Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_reverse 1 2334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor1.CNhs11339.11531-120A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11531-120A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroConjunctivalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastConjunctivalDonor1_CNhs11339_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor3_CNhs12734_ctss_fwd FibroConjunctivalD3+ bigWig Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_forward 0 2335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor3.CNhs12734.11692-122I9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11692-122I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroConjunctivalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastConjunctivalDonor3_CNhs12734_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor3_CNhs12734_tpm_fwd FibroConjunctivalD3+ bigWig Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_forward 1 2335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor3.CNhs12734.11692-122I9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11692-122I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroConjunctivalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastConjunctivalDonor3_CNhs12734_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor3_CNhs12734_ctss_rev FibroConjunctivalD3- bigWig Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_reverse 0 2336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor3.CNhs12734.11692-122I9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11692-122I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroConjunctivalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastConjunctivalDonor3_CNhs12734_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor3_CNhs12734_tpm_rev FibroConjunctivalD3- bigWig Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_reverse 1 2336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor3.CNhs12734.11692-122I9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11692-122I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroConjunctivalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastConjunctivalDonor3_CNhs12734_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor1_CNhs12499_ctss_fwd FibroDermalD1+ bigWig Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_forward 0 2337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor1.CNhs12499.11269-116G9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11269-116G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor1_CNhs12499_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor1_CNhs12499_tpm_fwd FibroDermalD1+ bigWig Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_forward 1 2337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor1.CNhs12499.11269-116G9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11269-116G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor1_CNhs12499_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor1_CNhs12499_ctss_rev FibroDermalD1- bigWig Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_reverse 0 2338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor1.CNhs12499.11269-116G9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11269-116G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor1_CNhs12499_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor1_CNhs12499_tpm_rev FibroDermalD1- bigWig Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_reverse 1 2338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor1.CNhs12499.11269-116G9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11269-116G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor1_CNhs12499_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor2_CNhs11379_ctss_fwd FibroDermalD2+ bigWig Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_forward 0 2339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor2.CNhs11379.11346-117G5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11346-117G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor2_CNhs11379_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor2_CNhs11379_tpm_fwd FibroDermalD2+ bigWig Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_forward 1 2339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor2.CNhs11379.11346-117G5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11346-117G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor2_CNhs11379_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor2_CNhs11379_ctss_rev FibroDermalD2- bigWig Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_reverse 0 2340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor2.CNhs11379.11346-117G5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11346-117G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor2_CNhs11379_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor2_CNhs11379_tpm_rev FibroDermalD2- bigWig Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_reverse 1 2340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor2.CNhs11379.11346-117G5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11346-117G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor2_CNhs11379_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor3_CNhs12028_ctss_fwd FibroDermalD3+ bigWig Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_forward 0 2341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor3.CNhs12028.11418-118F5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11418-118F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor3_CNhs12028_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor3_CNhs12028_tpm_fwd FibroDermalD3+ bigWig Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_forward 1 2341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor3.CNhs12028.11418-118F5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11418-118F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor3_CNhs12028_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor3_CNhs12028_ctss_rev FibroDermalD3- bigWig Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_reverse 0 2342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor3.CNhs12028.11418-118F5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11418-118F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor3_CNhs12028_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor3_CNhs12028_tpm_rev FibroDermalD3- bigWig Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_reverse 1 2342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor3.CNhs12028.11418-118F5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11418-118F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor3_CNhs12028_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor4_CNhs12052_ctss_fwd FibroDermalD4+ bigWig Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_forward 0 2343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor4.CNhs12052.11450-119A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11450-119A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor4_CNhs12052_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor4_CNhs12052_tpm_fwd FibroDermalD4+ bigWig Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_forward 1 2343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor4.CNhs12052.11450-119A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11450-119A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor4_CNhs12052_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor4_CNhs12052_ctss_rev FibroDermalD4- bigWig Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_reverse 0 2344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor4.CNhs12052.11450-119A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11450-119A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor4_CNhs12052_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor4_CNhs12052_tpm_rev FibroDermalD4- bigWig Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_reverse 1 2344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor4.CNhs12052.11450-119A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11450-119A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor4_CNhs12052_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor5_CNhs12055_ctss_fwd FibroDermalD5+ bigWig Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_forward 0 2345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor5.CNhs12055.11454-119A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11454-119A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor5_CNhs12055_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor5_CNhs12055_tpm_fwd FibroDermalD5+ bigWig Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_forward 1 2345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor5.CNhs12055.11454-119A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11454-119A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor5_CNhs12055_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor5_CNhs12055_ctss_rev FibroDermalD5- bigWig Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_reverse 0 2346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor5.CNhs12055.11454-119A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11454-119A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor5_CNhs12055_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor5_CNhs12055_tpm_rev FibroDermalD5- bigWig Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_reverse 1 2346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor5.CNhs12055.11454-119A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11454-119A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor5_CNhs12055_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor6_CNhs12059_ctss_fwd FibroDermalD6+ bigWig Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_forward 0 2347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor6.CNhs12059.11458-119A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11458-119A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor6_CNhs12059_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor6_CNhs12059_tpm_fwd FibroDermalD6+ bigWig Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_forward 1 2347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor6.CNhs12059.11458-119A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11458-119A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor6_CNhs12059_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor6_CNhs12059_ctss_rev FibroDermalD6- bigWig Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_reverse 0 2348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor6.CNhs12059.11458-119A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11458-119A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor6_CNhs12059_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor6_CNhs12059_tpm_rev FibroDermalD6- bigWig Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_reverse 1 2348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Dermal%2c%20donor6.CNhs12059.11458-119A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11458-119A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor6_CNhs12059_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor1_CNhs10866_ctss_fwd FibroGingivalD1+ bigWig Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_forward 0 2349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor1.CNhs10866.11237-116D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11237-116D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor1_CNhs10866_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor1_CNhs10866_tpm_fwd FibroGingivalD1+ bigWig Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_forward 1 2349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor1.CNhs10866.11237-116D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11237-116D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor1_CNhs10866_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor1_CNhs10866_ctss_rev FibroGingivalD1- bigWig Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_reverse 0 2350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor1.CNhs10866.11237-116D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11237-116D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor1_CNhs10866_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor1_CNhs10866_tpm_rev FibroGingivalD1- bigWig Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_reverse 1 2350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor1.CNhs10866.11237-116D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11237-116D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor1_CNhs10866_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor10Periodontitis_CNhs14135_ctss_fwd FibroGingivalD10 (p+ bigWig Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_forward 0 2351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor10%20%28periodontitis%29.CNhs14135.11928-125I2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11928-125I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD10 (p+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor10Periodontitis_CNhs14135_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor10Periodontitis_CNhs14135_tpm_fwd FibroGingivalD10 (p+ bigWig Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_forward 1 2351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor10%20%28periodontitis%29.CNhs14135.11928-125I2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11928-125I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD10 (p+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor10Periodontitis_CNhs14135_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor10Periodontitis_CNhs14135_ctss_rev FibroGingivalD10 (p- bigWig Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_reverse 0 2352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor10%20%28periodontitis%29.CNhs14135.11928-125I2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11928-125I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD10 (p-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor10Periodontitis_CNhs14135_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor10Periodontitis_CNhs14135_tpm_rev FibroGingivalD10 (p- bigWig Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_reverse 1 2352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor10%20%28periodontitis%29.CNhs14135.11928-125I2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11928-125I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD10 (p-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor10Periodontitis_CNhs14135_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor2_CNhs11961_ctss_fwd FibroGingivalD2+ bigWig Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_forward 0 2353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor2.CNhs11961.11318-117D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11318-117D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor2_CNhs11961_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor2_CNhs11961_tpm_fwd FibroGingivalD2+ bigWig Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_forward 1 2353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor2.CNhs11961.11318-117D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11318-117D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor2_CNhs11961_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor2_CNhs11961_ctss_rev FibroGingivalD2- bigWig Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_reverse 0 2354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor2.CNhs11961.11318-117D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11318-117D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor2_CNhs11961_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor2_CNhs11961_tpm_rev FibroGingivalD2- bigWig Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_reverse 1 2354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor2.CNhs11961.11318-117D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11318-117D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor2_CNhs11961_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor3_CNhs12006_ctss_fwd FibroGingivalD3+ bigWig Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_forward 0 2355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor3.CNhs12006.11394-118C8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11394-118C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor3_CNhs12006_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor3_CNhs12006_tpm_fwd FibroGingivalD3+ bigWig Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_forward 1 2355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor3.CNhs12006.11394-118C8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11394-118C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor3_CNhs12006_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor3_CNhs12006_ctss_rev FibroGingivalD3- bigWig Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_reverse 0 2356 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor3.CNhs12006.11394-118C8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11394-118C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor3_CNhs12006_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor3_CNhs12006_tpm_rev FibroGingivalD3- bigWig Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_reverse 1 2356 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor3.CNhs12006.11394-118C8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11394-118C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor3_CNhs12006_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor4GFH2_CNhs10848_ctss_fwd FibroGingivalD4+ bigWig Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_forward 0 2357 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor4%20%28GFH2%29.CNhs10848.11222-116B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11222-116B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor4GFH2_CNhs10848_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor4GFH2_CNhs10848_tpm_fwd FibroGingivalD4+ bigWig Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_forward 1 2357 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor4%20%28GFH2%29.CNhs10848.11222-116B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11222-116B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor4GFH2_CNhs10848_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor4GFH2_CNhs10848_ctss_rev FibroGingivalD4- bigWig Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_reverse 0 2358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor4%20%28GFH2%29.CNhs10848.11222-116B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11222-116B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor4GFH2_CNhs10848_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor4GFH2_CNhs10848_tpm_rev FibroGingivalD4- bigWig Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_reverse 1 2358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor4%20%28GFH2%29.CNhs10848.11222-116B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11222-116B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor4GFH2_CNhs10848_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor5GFH3_CNhs11952_ctss_fwd FibroGingivalD5+ bigWig Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_forward 0 2359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor5%20%28GFH3%29.CNhs11952.11303-117B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11303-117B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor5GFH3_CNhs11952_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor5GFH3_CNhs11952_tpm_fwd FibroGingivalD5+ bigWig Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_forward 1 2359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor5%20%28GFH3%29.CNhs11952.11303-117B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11303-117B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor5GFH3_CNhs11952_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor5GFH3_CNhs11952_ctss_rev FibroGingivalD5- bigWig Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_reverse 0 2360 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor5%20%28GFH3%29.CNhs11952.11303-117B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11303-117B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor5GFH3_CNhs11952_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor5GFH3_CNhs11952_tpm_rev FibroGingivalD5- bigWig Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_reverse 1 2360 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor5%20%28GFH3%29.CNhs11952.11303-117B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11303-117B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor5GFH3_CNhs11952_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_ctss_fwd FibroGingivalD6+ bigWig Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_forward 0 2361 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor6%20%28aggressive%20periodontitis%29.CNhs14128.11921-125H4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11921-125H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_tpm_fwd FibroGingivalD6+ bigWig Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_forward 1 2361 255 0 0 255 127 127 0 0 0 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100:8:8\ metadata ontology_id=11925-125H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_tpm_rev FibroGingivalD8- bigWig Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_reverse 1 2371 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28chronic%20periodontitis%29.CNhs14132.11925-125H8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11925-125H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor8Control_CNhs14133_ctss_rev FibroGingivalD8- bigWig Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_reverse 0 2372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28control%29.CNhs14133.11926-125H9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11926-125H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor8Control_CNhs14133_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor8Control_CNhs14133_tpm_rev FibroGingivalD8- bigWig Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_reverse 1 2372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28control%29.CNhs14133.11926-125H9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11926-125H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor8Control_CNhs14133_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor9Control_CNhs14134_ctss_fwd FibroGingivalD9+ bigWig Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_forward 0 2373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor9%20%28control%29.CNhs14134.11927-125I1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11927-125I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD9+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor9Control_CNhs14134_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor9Control_CNhs14134_tpm_fwd FibroGingivalD9+ bigWig Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_forward 1 2373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor9%20%28control%29.CNhs14134.11927-125I1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11927-125I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD9+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor9Control_CNhs14134_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor9Control_CNhs14134_ctss_rev FibroGingivalD9- bigWig Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_reverse 0 2374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor9%20%28control%29.CNhs14134.11927-125I1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11927-125I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD9-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor9Control_CNhs14134_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor9Control_CNhs14134_tpm_rev FibroGingivalD9- bigWig Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_reverse 1 2374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Gingival%2c%20donor9%20%28control%29.CNhs14134.11927-125I1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11927-125I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD9-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor9Control_CNhs14134_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1\ urlLabel FANTOM5 Details:\ FibroblastLungDonor1_CNhs12500_ctss_fwd FibroLungD1+ bigWig Fibroblast - Lung, donor1_CNhs12500_11270-116H1_forward 0 2375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lung%2c%20donor1.CNhs12500.11270-116H1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor1_CNhs12500_11270-116H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11270-116H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor1_CNhs12500_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1\ urlLabel FANTOM5 Details:\ FibroblastLungDonor1_CNhs12500_tpm_fwd FibroLungD1+ bigWig Fibroblast - Lung, donor1_CNhs12500_11270-116H1_forward 1 2375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lung%2c%20donor1.CNhs12500.11270-116H1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor1_CNhs12500_11270-116H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11270-116H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor1_CNhs12500_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1\ urlLabel FANTOM5 Details:\ FibroblastLungDonor1_CNhs12500_ctss_rev FibroLungD1- bigWig Fibroblast - Lung, donor1_CNhs12500_11270-116H1_reverse 0 2376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lung%2c%20donor1.CNhs12500.11270-116H1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor1_CNhs12500_11270-116H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11270-116H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor1_CNhs12500_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1\ urlLabel FANTOM5 Details:\ FibroblastLungDonor1_CNhs12500_tpm_rev FibroLungD1- bigWig Fibroblast - Lung, donor1_CNhs12500_11270-116H1_reverse 1 2376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lung%2c%20donor1.CNhs12500.11270-116H1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor1_CNhs12500_11270-116H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11270-116H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor1_CNhs12500_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1\ urlLabel FANTOM5 Details:\ FibroblastLungDonor2_CNhs11380_ctss_fwd FibroLungD2+ bigWig Fibroblast - Lung, donor2_CNhs11380_11347-117G6_forward 0 2377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lung%2c%20donor2.CNhs11380.11347-117G6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor2_CNhs11380_11347-117G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11347-117G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor2_CNhs11380_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor2_CNhs11380_tpm_fwd FibroLungD2+ bigWig Fibroblast - Lung, donor2_CNhs11380_11347-117G6_forward 1 2377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lung%2c%20donor2.CNhs11380.11347-117G6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor2_CNhs11380_11347-117G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11347-117G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor2_CNhs11380_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor2_CNhs11380_ctss_rev FibroLungD2- bigWig Fibroblast - Lung, donor2_CNhs11380_11347-117G6_reverse 0 2378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lung%2c%20donor2.CNhs11380.11347-117G6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor2_CNhs11380_11347-117G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11347-117G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor2_CNhs11380_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor2_CNhs11380_tpm_rev FibroLungD2- bigWig Fibroblast - Lung, donor2_CNhs11380_11347-117G6_reverse 1 2378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lung%2c%20donor2.CNhs11380.11347-117G6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor2_CNhs11380_11347-117G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11347-117G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor2_CNhs11380_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor3_CNhs12029_ctss_fwd FibroLungD3+ bigWig Fibroblast - Lung, donor3_CNhs12029_11419-118F6_forward 0 2379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lung%2c%20donor3.CNhs12029.11419-118F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor3_CNhs12029_11419-118F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11419-118F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor3_CNhs12029_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor3_CNhs12029_tpm_fwd FibroLungD3+ bigWig Fibroblast - Lung, donor3_CNhs12029_11419-118F6_forward 1 2379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lung%2c%20donor3.CNhs12029.11419-118F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor3_CNhs12029_11419-118F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11419-118F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor3_CNhs12029_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor3_CNhs12029_ctss_rev FibroLungD3- bigWig Fibroblast - Lung, donor3_CNhs12029_11419-118F6_reverse 0 2380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lung%2c%20donor3.CNhs12029.11419-118F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor3_CNhs12029_11419-118F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11419-118F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor3_CNhs12029_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor3_CNhs12029_tpm_rev FibroLungD3- bigWig Fibroblast - Lung, donor3_CNhs12029_11419-118F6_reverse 1 2380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lung%2c%20donor3.CNhs12029.11419-118F6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor3_CNhs12029_11419-118F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11419-118F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor3_CNhs12029_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor1_CNhs11322_ctss_fwd FibroLymphaticD1+ bigWig Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_forward 0 2381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor1.CNhs11322.11506-119G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11506-119G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor1_CNhs11322_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor1_CNhs11322_tpm_fwd FibroLymphaticD1+ bigWig Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_forward 1 2381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor1.CNhs11322.11506-119G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11506-119G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor1_CNhs11322_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor1_CNhs11322_ctss_rev FibroLymphaticD1- bigWig Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_reverse 0 2382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor1.CNhs11322.11506-119G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11506-119G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor1_CNhs11322_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor1_CNhs11322_tpm_rev FibroLymphaticD1- bigWig Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_reverse 1 2382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor1.CNhs11322.11506-119G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11506-119G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor1_CNhs11322_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor2_CNhs12082_ctss_fwd FibroLymphaticD2+ bigWig Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_forward 0 2383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor2.CNhs12082.11586-120G2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11586-120G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor2_CNhs12082_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor2_CNhs12082_tpm_fwd FibroLymphaticD2+ bigWig Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_forward 1 2383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor2.CNhs12082.11586-120G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11586-120G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor2_CNhs12082_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor2_CNhs12082_ctss_rev FibroLymphaticD2- bigWig Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_reverse 0 2384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor2.CNhs12082.11586-120G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11586-120G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor2_CNhs12082_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor2_CNhs12082_tpm_rev FibroLymphaticD2- bigWig Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_reverse 1 2384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor2.CNhs12082.11586-120G2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11586-120G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor2_CNhs12082_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor3_CNhs12118_ctss_fwd FibroLymphaticD3+ bigWig Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_forward 0 2385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor3.CNhs12118.11667-122G2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11667-122G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor3_CNhs12118_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor3_CNhs12118_tpm_fwd FibroLymphaticD3+ bigWig Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_forward 1 2385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor3.CNhs12118.11667-122G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11667-122G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor3_CNhs12118_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor3_CNhs12118_ctss_rev FibroLymphaticD3- bigWig Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_reverse 0 2386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor3.CNhs12118.11667-122G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11667-122G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor3_CNhs12118_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor3_CNhs12118_tpm_rev FibroLymphaticD3- bigWig Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_reverse 1 2386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor3.CNhs12118.11667-122G2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11667-122G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor3_CNhs12118_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor1_CNhs11348_ctss_fwd FibroMammaryD1+ bigWig Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_forward 0 2387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Mammary%2c%20donor1.CNhs11348.11540-120B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11540-120B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor1_CNhs11348_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor1_CNhs11348_tpm_fwd FibroMammaryD1+ bigWig Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_forward 1 2387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Mammary%2c%20donor1.CNhs11348.11540-120B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11540-120B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor1_CNhs11348_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor1_CNhs11348_ctss_rev FibroMammaryD1- bigWig Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_reverse 0 2388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Mammary%2c%20donor1.CNhs11348.11540-120B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11540-120B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor1_CNhs11348_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor1_CNhs11348_tpm_rev FibroMammaryD1- bigWig Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_reverse 1 2388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Mammary%2c%20donor1.CNhs11348.11540-120B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11540-120B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor1_CNhs11348_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor2_CNhs12103_ctss_fwd FibroMammaryD2+ bigWig Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_forward 0 2389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Mammary%2c%20donor2.CNhs12103.11620-122A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11620-122A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor2_CNhs12103_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor2_CNhs12103_tpm_fwd FibroMammaryD2+ bigWig Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_forward 1 2389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Mammary%2c%20donor2.CNhs12103.11620-122A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11620-122A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor2_CNhs12103_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor2_CNhs12103_ctss_rev FibroMammaryD2- bigWig Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_reverse 0 2390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Mammary%2c%20donor2.CNhs12103.11620-122A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11620-122A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor2_CNhs12103_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor2_CNhs12103_tpm_rev FibroMammaryD2- bigWig Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_reverse 1 2390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Mammary%2c%20donor2.CNhs12103.11620-122A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11620-122A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor2_CNhs12103_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor3_CNhs12128_ctss_fwd FibroMammaryD3+ bigWig Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_forward 0 2391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Mammary%2c%20donor3.CNhs12128.11701-123A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11701-123A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor3_CNhs12128_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor3_CNhs12128_tpm_fwd FibroMammaryD3+ bigWig Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_forward 1 2391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Mammary%2c%20donor3.CNhs12128.11701-123A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11701-123A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor3_CNhs12128_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor3_CNhs12128_ctss_rev FibroMammaryD3- bigWig Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_reverse 0 2392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Mammary%2c%20donor3.CNhs12128.11701-123A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11701-123A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor3_CNhs12128_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor3_CNhs12128_tpm_rev FibroMammaryD3- bigWig Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_reverse 1 2392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Mammary%2c%20donor3.CNhs12128.11701-123A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11701-123A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor3_CNhs12128_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor1_CNhs10867_ctss_fwd FibroPeriodontalLigamentD1+ bigWig Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_forward 0 2393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor1.CNhs10867.11238-116D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11238-116D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor1_CNhs10867_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor1_CNhs10867_tpm_fwd FibroPeriodontalLigamentD1+ bigWig Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_forward 1 2393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor1.CNhs10867.11238-116D5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11238-116D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor1_CNhs10867_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor1_CNhs10867_ctss_rev FibroPeriodontalLigamentD1- bigWig Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_reverse 0 2394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor1.CNhs10867.11238-116D5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11238-116D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor1_CNhs10867_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor1_CNhs10867_tpm_rev FibroPeriodontalLigamentD1- bigWig Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_reverse 1 2394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor1.CNhs10867.11238-116D5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11238-116D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor1_CNhs10867_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor2_CNhs11962_ctss_fwd FibroPeriodontalLigamentD2+ bigWig Fibroblast - Periodontal Ligament, donor2_CNhs11962_11319-117D5_forward 0 2395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11319-117D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor2.CNhs11962.11319-117D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - 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/gbdb/hg19/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor3.CNhs11907.11395-118C9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11395-118C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor3_CNhs11907_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor3_CNhs11907_tpm_rev FibroPeriodontalLigamentD3- bigWig Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_reverse 1 2398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor3.CNhs11907.11395-118C9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel 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FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_tpm_fwd FibroPeriodontalLigamentD5+ bigWig Fibroblast - Periodontal Ligament, donor5 (PL30)_CNhs11953_11304-117B8_forward 1 2401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11304-117B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor5%20%28PL30%29.CNhs11953.11304-117B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor5 (PL30)_CNhs11953_11304-117B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11304-117B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11304-117B8\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_ctss_rev FibroPeriodontalLigamentD5- bigWig Fibroblast - Periodontal Ligament, donor5 (PL30)_CNhs11953_11304-117B8_reverse 0 2402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11304-117B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor5%20%28PL30%29.CNhs11953.11304-117B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor5 (PL30)_CNhs11953_11304-117B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11304-117B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11304-117B8\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_tpm_rev FibroPeriodontalLigamentD5- bigWig Fibroblast - Periodontal Ligament, donor5 (PL30)_CNhs11953_11304-117B8_reverse 1 2402 0 0 255 127 127 255 0 0 0 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/gbdb/hg19/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor6%20%28PLH3%29.CNhs11996.11380-118B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor6 (PLH3)_CNhs11996_11380-118B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11380-118B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor6PLH3_CNhs11996_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11380-118B3\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor6PLH3_CNhs11996_tpm_fwd FibroPeriodontalLigamentD6+ bigWig Fibroblast - Periodontal Ligament, donor6 (PLH3)_CNhs11996_11380-118B3_forward 1 2403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11380-118B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor6%20%28PLH3%29.CNhs11996.11380-118B3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor6 (PLH3)_CNhs11996_11380-118B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11380-118B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor6PLH3_CNhs11996_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11380-118B3\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor6PLH3_CNhs11996_ctss_rev FibroPeriodontalLigamentD6- bigWig Fibroblast - Periodontal Ligament, donor6 (PLH3)_CNhs11996_11380-118B3_reverse 0 2404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11380-118B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor6%20%28PLH3%29.CNhs11996.11380-118B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor6 (PLH3)_CNhs11996_11380-118B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11380-118B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor6PLH3_CNhs11996_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11380-118B3\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor6PLH3_CNhs11996_tpm_rev FibroPeriodontalLigamentD6- bigWig Fibroblast - Periodontal Ligament, donor6 (PLH3)_CNhs11996_11380-118B3_reverse 1 2404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11380-118B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor6%20%28PLH3%29.CNhs11996.11380-118B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor6 (PLH3)_CNhs11996_11380-118B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11380-118B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor6PLH3_CNhs11996_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11380-118B3\ urlLabel FANTOM5 Details:\ FibroblastPulmonaryArteryDonor1_CNhs10878_ctss_fwd FibroPulmonaryArteryD1+ bigWig Fibroblast - Pulmonary Artery, donor1_CNhs10878_11250-116E8_forward 0 2405 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11250-116E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Pulmonary%20Artery%2c%20donor1.CNhs10878.11250-116E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel 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off\ shortLabel FibroPulmonaryArteryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPulmonaryArteryDonor1_CNhs10878_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11250-116E8\ urlLabel FANTOM5 Details:\ FibroblastPulmonaryArteryDonor1_CNhs10878_ctss_rev FibroPulmonaryArteryD1- bigWig Fibroblast - Pulmonary Artery, donor1_CNhs10878_11250-116E8_reverse 0 2406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11250-116E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Pulmonary%20Artery%2c%20donor1.CNhs10878.11250-116E8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Pulmonary Artery, donor1_CNhs10878_11250-116E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11250-116E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPulmonaryArteryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPulmonaryArteryDonor1_CNhs10878_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11250-116E8\ urlLabel FANTOM5 Details:\ FibroblastPulmonaryArteryDonor1_CNhs10878_tpm_rev FibroPulmonaryArteryD1- bigWig Fibroblast - Pulmonary Artery, donor1_CNhs10878_11250-116E8_reverse 1 2406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11250-116E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Pulmonary%20Artery%2c%20donor1.CNhs10878.11250-116E8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Pulmonary Artery, donor1_CNhs10878_11250-116E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11250-116E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPulmonaryArteryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPulmonaryArteryDonor1_CNhs10878_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11250-116E8\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor1_CNhs11353_ctss_fwd 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donor1_CNhs11353_11556-120C8_forward 1 2407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11556-120C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor1.CNhs11353.11556-120C8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin dystrophia myotonica, donor1_CNhs11353_11556-120C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11556-120C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinDystrophiaMyotonicaDonor1_CNhs11353_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11556-120C8\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor1_CNhs11353_ctss_rev FibroSkinDystrophiaMyotonicaNucfracD1- bigWig Fibroblast - skin dystrophia myotonica, donor1_CNhs11353_11556-120C8_reverse 0 2408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11556-120C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor1.CNhs11353.11556-120C8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor1_CNhs11353_11556-120C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11556-120C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor1_CNhs11353_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11556-120C8\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor1_CNhs11353_tpm_rev FibroSkinDystrophiaMyotonicaNucfracD1- bigWig Fibroblast - skin dystrophia myotonica, donor1_CNhs11353_11556-120C8_reverse 1 2408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11556-120C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor1.CNhs11353.11556-120C8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor1_CNhs11353_11556-120C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11556-120C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor1_CNhs11353_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11556-120C8\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor2_CNhs11354_ctss_fwd FibroSkinDystrophiaMyotonicaNucfracD2+ bigWig Fibroblast - skin dystrophia myotonica, donor2_CNhs11354_11557-120C9_forward 0 2409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11557-120C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor2.CNhs11354.11557-120C9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin dystrophia myotonica, donor2_CNhs11354_11557-120C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11557-120C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinDystrophiaMyotonicaDonor2_CNhs11354_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11557-120C9\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor2_CNhs11354_tpm_fwd FibroSkinDystrophiaMyotonicaNucfracD2+ bigWig Fibroblast - skin dystrophia myotonica, donor2_CNhs11354_11557-120C9_forward 1 2409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11557-120C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor2.CNhs11354.11557-120C9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin dystrophia myotonica, donor2_CNhs11354_11557-120C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11557-120C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinDystrophiaMyotonicaDonor2_CNhs11354_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11557-120C9\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor2_CNhs11354_ctss_rev FibroSkinDystrophiaMyotonicaNucfracD2- bigWig Fibroblast - skin dystrophia myotonica, donor2_CNhs11354_11557-120C9_reverse 0 2410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11557-120C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor2.CNhs11354.11557-120C9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor2_CNhs11354_11557-120C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11557-120C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor2_CNhs11354_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11557-120C9\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor2_CNhs11354_tpm_rev FibroSkinDystrophiaMyotonicaNucfracD2- bigWig Fibroblast - skin dystrophia myotonica, donor2_CNhs11354_11557-120C9_reverse 1 2410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11557-120C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor2.CNhs11354.11557-120C9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor2_CNhs11354_11557-120C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11557-120C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor2_CNhs11354_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11557-120C9\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_ctss_fwd FibroSkinDystrophiaMyotonicaNucfracD3+ bigWig Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_forward 0 2411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor3.CNhs11913.11560-120D3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11560-120D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_tpm_fwd FibroSkinDystrophiaMyotonicaNucfracD3+ bigWig Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_forward 1 2411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor3.CNhs11913.11560-120D3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11560-120D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_ctss_rev FibroSkinDystrophiaMyotonicaNucfracD3- bigWig Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_reverse 0 2412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor3.CNhs11913.11560-120D3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11560-120D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_tpm_rev FibroSkinDystrophiaMyotonicaNucfracD3- bigWig Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_reverse 1 2412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor3.CNhs11913.11560-120D3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11560-120D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor1_CNhs11351_ctss_fwd FibroSkinNormalNucfracD1+ bigWig Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_forward 0 2413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor1.CNhs11351.11553-120C5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11553-120C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinNormalNucfracD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinNormalDonor1_CNhs11351_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor1_CNhs11351_tpm_fwd FibroSkinNormalNucfracD1+ bigWig Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_forward 1 2413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor1.CNhs11351.11553-120C5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11553-120C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinNormalNucfracD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinNormalDonor1_CNhs11351_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor1_CNhs11351_ctss_rev FibroSkinNormalNucfracD1- bigWig Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_reverse 0 2414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor1.CNhs11351.11553-120C5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11553-120C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinNormalNucfracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinNormalDonor1_CNhs11351_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor1_CNhs11351_tpm_rev FibroSkinNormalNucfracD1- bigWig Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_reverse 1 2414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor1.CNhs11351.11553-120C5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11553-120C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinNormalNucfracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinNormalDonor1_CNhs11351_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor2_CNhs11914_ctss_fwd FibroSkinNormalNucfracD2+ bigWig Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_forward 0 2415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor2.CNhs11914.11561-120D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11561-120D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinNormalNucfracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinNormalDonor2_CNhs11914_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor2_CNhs11914_tpm_fwd FibroSkinNormalNucfracD2+ bigWig Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_forward 1 2415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor2.CNhs11914.11561-120D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11561-120D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinNormalNucfracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinNormalDonor2_CNhs11914_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor2_CNhs11914_ctss_rev FibroSkinNormalNucfracD2- bigWig Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_reverse 0 2416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor2.CNhs11914.11561-120D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11561-120D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel 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http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_ctss_fwd FibroSkinSpinalMuscularAtrophyNucfracD1+ bigWig Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_forward 0 2417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor1.CNhs11074.11555-120C7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11555-120C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_tpm_fwd FibroSkinSpinalMuscularAtrophyNucfracD1+ bigWig Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_forward 1 2417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor1.CNhs11074.11555-120C7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11555-120C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_ctss_rev FibroSkinSpinalMuscularAtrophyNucfracD1- bigWig Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_reverse 0 2418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor1.CNhs11074.11555-120C7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11555-120C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_tpm_rev FibroSkinSpinalMuscularAtrophyNucfracD1- bigWig Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_reverse 1 2418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor1.CNhs11074.11555-120C7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11555-120C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_ctss_fwd FibroSkinSpinalMuscularAtrophyNucfracD2+ bigWig Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_forward 0 2419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor2.CNhs11911.11558-120D1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11558-120D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_tpm_fwd FibroSkinSpinalMuscularAtrophyNucfracD2+ bigWig Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_forward 1 2419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor2.CNhs11911.11558-120D1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11558-120D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_ctss_rev FibroSkinSpinalMuscularAtrophyNucfracD2- bigWig Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_reverse 0 2420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor2.CNhs11911.11558-120D1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11558-120D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_tpm_rev FibroSkinSpinalMuscularAtrophyNucfracD2- bigWig Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_reverse 1 2420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor2.CNhs11911.11558-120D1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11558-120D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_ctss_fwd FibroSkinSpinalMuscularAtrophyNucfracD3+ bigWig Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_forward 0 2421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor3.CNhs11912.11559-120D2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11559-120D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_tpm_fwd FibroSkinSpinalMuscularAtrophyNucfracD3+ bigWig Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_forward 1 2421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor3.CNhs11912.11559-120D2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11559-120D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_ctss_rev FibroSkinSpinalMuscularAtrophyNucfracD3- bigWig Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_reverse 0 2422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor3.CNhs11912.11559-120D2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11559-120D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_tpm_rev FibroSkinSpinalMuscularAtrophyNucfracD3- bigWig Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_reverse 1 2422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor3.CNhs11912.11559-120D2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11559-120D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2\ urlLabel FANTOM5 Details:\ FibroblastSkinWalkerWarburgDonor1_CNhs11352_ctss_fwd FibroSkinWalkerWarburgD1+ bigWig Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_forward 0 2423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20walker%20warburg%2c%20donor1.CNhs11352.11554-120C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11554-120C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinWalkerWarburgD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinWalkerWarburgDonor1_CNhs11352_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6\ urlLabel FANTOM5 Details:\ FibroblastSkinWalkerWarburgDonor1_CNhs11352_tpm_fwd FibroSkinWalkerWarburgD1+ bigWig Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_forward 1 2423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20walker%20warburg%2c%20donor1.CNhs11352.11554-120C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11554-120C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinWalkerWarburgD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinWalkerWarburgDonor1_CNhs11352_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6\ urlLabel FANTOM5 Details:\ FibroblastSkinWalkerWarburgDonor1_CNhs11352_ctss_rev FibroSkinWalkerWarburgD1- bigWig Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_reverse 0 2424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20walker%20warburg%2c%20donor1.CNhs11352.11554-120C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11554-120C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinWalkerWarburgD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinWalkerWarburgDonor1_CNhs11352_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6\ urlLabel FANTOM5 Details:\ FibroblastSkinWalkerWarburgDonor1_CNhs11352_tpm_rev FibroSkinWalkerWarburgD1- bigWig Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_reverse 1 2424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20skin%20walker%20warburg%2c%20donor1.CNhs11352.11554-120C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11554-120C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinWalkerWarburgD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinWalkerWarburgDonor1_CNhs11352_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor1_CNhs11343_ctss_fwd FibroVillousMesenchymalD1+ bigWig Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_forward 0 2425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor1.CNhs11343.11535-120A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11535-120A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroVillousMesenchymalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastVillousMesenchymalDonor1_CNhs11343_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor1_CNhs11343_tpm_fwd FibroVillousMesenchymalD1+ bigWig Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_forward 1 2425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor1.CNhs11343.11535-120A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11535-120A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroVillousMesenchymalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastVillousMesenchymalDonor1_CNhs11343_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor1_CNhs11343_ctss_rev FibroVillousMesenchymalD1- bigWig Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_reverse 0 2426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5 regulation 0 bigDataUrl 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Details:\ GingivalEpithelialCellsDonor2GEA14_CNhs11896_tpm_rev GingivalEpithelialCellsD2- bigWig Gingival epithelial cells, donor2 (GEA14)_CNhs11896_11302-117B6_reverse 1 2438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11302-117B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Gingival%20epithelial%20cells%2c%20donor2%20%28GEA14%29.CNhs11896.11302-117B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Gingival epithelial cells, donor2 (GEA14)_CNhs11896_11302-117B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11302-117B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GingivalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track GingivalEpithelialCellsDonor2GEA14_CNhs11896_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11302-117B6\ urlLabel FANTOM5 Details:\ GingivalEpithelialCellsDonor3GEA15_CNhs11903_ctss_fwd GingivalEpithelialCellsD3+ bigWig Gingival epithelial cells, donor3 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parent TSS_activity_TPM off\ shortLabel GingivalEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track GingivalEpithelialCellsDonor3GEA15_CNhs11903_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11379-118B2\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor1_CNhs12501_ctss_fwd HairFollicleDermalPapillaCellsD1+ bigWig Hair Follicle Dermal Papilla Cells, donor1_CNhs12501_11271-116H2_forward 0 2441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11271-116H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor1.CNhs12501.11271-116H2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Dermal Papilla Cells, donor1_CNhs12501_11271-116H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11271-116H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleDermalPapillaCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleDermalPapillaCellsDonor1_CNhs12501_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11271-116H2\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor1_CNhs12501_tpm_fwd HairFollicleDermalPapillaCellsD1+ bigWig Hair Follicle Dermal Papilla Cells, donor1_CNhs12501_11271-116H2_forward 1 2441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11271-116H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor1.CNhs12501.11271-116H2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Dermal Papilla Cells, donor1_CNhs12501_11271-116H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11271-116H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleDermalPapillaCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleDermalPapillaCellsDonor1_CNhs12501_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11271-116H2\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor1_CNhs12501_ctss_rev HairFollicleDermalPapillaCellsD1- bigWig Hair Follicle Dermal Papilla Cells, donor1_CNhs12501_11271-116H2_reverse 0 2442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11271-116H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor1.CNhs12501.11271-116H2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Hair Follicle Dermal Papilla Cells, donor1_CNhs12501_11271-116H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11271-116H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleDermalPapillaCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleDermalPapillaCellsDonor1_CNhs12501_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11271-116H2\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor1_CNhs12501_tpm_rev HairFollicleDermalPapillaCellsD1- bigWig Hair Follicle Dermal Papilla Cells, donor1_CNhs12501_11271-116H2_reverse 1 2442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11271-116H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor1.CNhs12501.11271-116H2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Hair Follicle Dermal Papilla Cells, donor1_CNhs12501_11271-116H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11271-116H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleDermalPapillaCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleDermalPapillaCellsDonor1_CNhs12501_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11271-116H2\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor2_CNhs11979_ctss_fwd HairFollicleDermalPapillaCellsD2+ bigWig Hair Follicle Dermal Papilla Cells, donor2_CNhs11979_11348-117G7_forward 0 2443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11348-117G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor2.CNhs11979.11348-117G7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Dermal Papilla Cells, donor2_CNhs11979_11348-117G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11348-117G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleDermalPapillaCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleDermalPapillaCellsDonor2_CNhs11979_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11348-117G7\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor2_CNhs11979_tpm_fwd HairFollicleDermalPapillaCellsD2+ bigWig Hair Follicle Dermal Papilla Cells, donor2_CNhs11979_11348-117G7_forward 1 2443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11348-117G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor2.CNhs11979.11348-117G7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Dermal Papilla Cells, donor2_CNhs11979_11348-117G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11348-117G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleDermalPapillaCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleDermalPapillaCellsDonor2_CNhs11979_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11348-117G7\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor2_CNhs11979_ctss_rev HairFollicleDermalPapillaCellsD2- bigWig Hair Follicle Dermal Papilla Cells, donor2_CNhs11979_11348-117G7_reverse 0 2444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11348-117G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor2.CNhs11979.11348-117G7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Hair Follicle Dermal Papilla Cells, donor2_CNhs11979_11348-117G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11348-117G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleDermalPapillaCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleDermalPapillaCellsDonor2_CNhs11979_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11348-117G7\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor2_CNhs11979_tpm_rev HairFollicleDermalPapillaCellsD2- bigWig Hair Follicle Dermal Papilla Cells, donor2_CNhs11979_11348-117G7_reverse 1 2444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11348-117G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor2.CNhs11979.11348-117G7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Hair Follicle Dermal Papilla Cells, donor2_CNhs11979_11348-117G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11348-117G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleDermalPapillaCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleDermalPapillaCellsDonor2_CNhs11979_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11348-117G7\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor3_CNhs12030_ctss_fwd HairFollicleDermalPapillaCellsD3+ bigWig Hair Follicle Dermal Papilla Cells, donor3_CNhs12030_11420-118F7_forward 0 2445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11420-118F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor3.CNhs12030.11420-118F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Dermal Papilla Cells, donor3_CNhs12030_11420-118F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11420-118F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleDermalPapillaCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleDermalPapillaCellsDonor3_CNhs12030_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11420-118F7\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor3_CNhs12030_tpm_fwd HairFollicleDermalPapillaCellsD3+ bigWig Hair Follicle Dermal Papilla Cells, donor3_CNhs12030_11420-118F7_forward 1 2445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11420-118F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor3.CNhs12030.11420-118F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Dermal Papilla Cells, donor3_CNhs12030_11420-118F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11420-118F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleDermalPapillaCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleDermalPapillaCellsDonor3_CNhs12030_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11420-118F7\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor3_CNhs12030_ctss_rev HairFollicleDermalPapillaCellsD3- bigWig Hair Follicle Dermal Papilla Cells, donor3_CNhs12030_11420-118F7_reverse 0 2446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11420-118F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor3.CNhs12030.11420-118F7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Hair Follicle Dermal Papilla Cells, donor3_CNhs12030_11420-118F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11420-118F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleDermalPapillaCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleDermalPapillaCellsDonor3_CNhs12030_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11420-118F7\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor3_CNhs12030_tpm_rev HairFollicleDermalPapillaCellsD3- bigWig Hair Follicle Dermal Papilla Cells, donor3_CNhs12030_11420-118F7_reverse 1 2446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11420-118F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor3.CNhs12030.11420-118F7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Hair Follicle Dermal Papilla Cells, donor3_CNhs12030_11420-118F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11420-118F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleDermalPapillaCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleDermalPapillaCellsDonor3_CNhs12030_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11420-118F7\ urlLabel FANTOM5 Details:\ HairFollicleOuterRootSheathCellsDonor1_CNhs12339_ctss_fwd HairFollicleOuterRootSheathCellsD1+ bigWig Hair Follicle Outer Root Sheath Cells, donor1_CNhs12339_11504-119G1_forward 0 2447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11504-119G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Outer%20Root%20Sheath%20Cells%2c%20donor1.CNhs12339.11504-119G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Outer Root Sheath Cells, donor1_CNhs12339_11504-119G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11504-119G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleOuterRootSheathCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleOuterRootSheathCellsDonor1_CNhs12339_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11504-119G1\ urlLabel FANTOM5 Details:\ HairFollicleOuterRootSheathCellsDonor1_CNhs12339_tpm_fwd HairFollicleOuterRootSheathCellsD1+ bigWig Hair Follicle Outer Root Sheath Cells, donor1_CNhs12339_11504-119G1_forward 1 2447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11504-119G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Outer%20Root%20Sheath%20Cells%2c%20donor1.CNhs12339.11504-119G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Outer Root Sheath Cells, donor1_CNhs12339_11504-119G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11504-119G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleOuterRootSheathCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleOuterRootSheathCellsDonor1_CNhs12339_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11504-119G1\ urlLabel FANTOM5 Details:\ HairFollicleOuterRootSheathCellsDonor1_CNhs12339_ctss_rev HairFollicleOuterRootSheathCellsD1- bigWig Hair Follicle Outer Root Sheath Cells, donor1_CNhs12339_11504-119G1_reverse 0 2448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11504-119G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Outer%20Root%20Sheath%20Cells%2c%20donor1.CNhs12339.11504-119G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Hair Follicle Outer Root Sheath Cells, donor1_CNhs12339_11504-119G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11504-119G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleOuterRootSheathCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleOuterRootSheathCellsDonor1_CNhs12339_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11504-119G1\ urlLabel FANTOM5 Details:\ HairFollicleOuterRootSheathCellsDonor1_CNhs12339_tpm_rev HairFollicleOuterRootSheathCellsD1- bigWig Hair Follicle Outer Root Sheath Cells, donor1_CNhs12339_11504-119G1_reverse 1 2448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11504-119G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Outer%20Root%20Sheath%20Cells%2c%20donor1.CNhs12339.11504-119G1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Hair Follicle Outer Root Sheath Cells, donor1_CNhs12339_11504-119G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11504-119G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleOuterRootSheathCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleOuterRootSheathCellsDonor1_CNhs12339_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11504-119G1\ urlLabel FANTOM5 Details:\ HairFollicleOuterRootSheathCellsDonor2_CNhs12347_ctss_fwd HairFollicleOuterRootSheathCellsD2+ bigWig Hair Follicle Outer Root Sheath Cells, donor2_CNhs12347_11584-120F9_forward 0 2449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11584-120F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Outer%20Root%20Sheath%20Cells%2c%20donor2.CNhs12347.11584-120F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Outer Root Sheath Cells, donor2_CNhs12347_11584-120F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11584-120F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleOuterRootSheathCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleOuterRootSheathCellsDonor2_CNhs12347_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11584-120F9\ urlLabel FANTOM5 Details:\ HairFollicleOuterRootSheathCellsDonor2_CNhs12347_tpm_fwd HairFollicleOuterRootSheathCellsD2+ bigWig Hair Follicle Outer Root Sheath Cells, donor2_CNhs12347_11584-120F9_forward 1 2449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11584-120F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Outer%20Root%20Sheath%20Cells%2c%20donor2.CNhs12347.11584-120F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Outer Root Sheath Cells, donor2_CNhs12347_11584-120F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11584-120F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleOuterRootSheathCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleOuterRootSheathCellsDonor2_CNhs12347_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11584-120F9\ urlLabel FANTOM5 Details:\ HairFollicleOuterRootSheathCellsDonor2_CNhs12347_ctss_rev HairFollicleOuterRootSheathCellsD2- bigWig Hair Follicle Outer Root Sheath Cells, donor2_CNhs12347_11584-120F9_reverse 0 2450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11584-120F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Outer%20Root%20Sheath%20Cells%2c%20donor2.CNhs12347.11584-120F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Hair Follicle Outer Root Sheath Cells, donor2_CNhs12347_11584-120F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11584-120F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleOuterRootSheathCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleOuterRootSheathCellsDonor2_CNhs12347_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11584-120F9\ urlLabel FANTOM5 Details:\ HairFollicleOuterRootSheathCellsDonor2_CNhs12347_tpm_rev HairFollicleOuterRootSheathCellsD2- bigWig Hair Follicle Outer Root Sheath Cells, donor2_CNhs12347_11584-120F9_reverse 1 2450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11584-120F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hair%20Follicle%20Outer%20Root%20Sheath%20Cells%2c%20donor2.CNhs12347.11584-120F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Hair Follicle Outer Root Sheath Cells, donor2_CNhs12347_11584-120F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11584-120F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleOuterRootSheathCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleOuterRootSheathCellsDonor2_CNhs12347_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11584-120F9\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor1_CNhs12075_ctss_fwd HepaticSinusoidalEndothelialCellsD1+ bigWig Hepatic Sinusoidal Endothelial Cells, donor1_CNhs12075_11521-119H9_forward 0 2451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11521-119H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor1.CNhs12075.11521-119H9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatic Sinusoidal Endothelial Cells, donor1_CNhs12075_11521-119H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11521-119H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticSinusoidalEndothelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticSinusoidalEndothelialCellsDonor1_CNhs12075_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11521-119H9\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor1_CNhs12075_tpm_fwd HepaticSinusoidalEndothelialCellsD1+ bigWig Hepatic Sinusoidal Endothelial Cells, donor1_CNhs12075_11521-119H9_forward 1 2451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11521-119H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor1.CNhs12075.11521-119H9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatic Sinusoidal Endothelial Cells, donor1_CNhs12075_11521-119H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11521-119H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticSinusoidalEndothelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticSinusoidalEndothelialCellsDonor1_CNhs12075_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11521-119H9\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor1_CNhs12075_ctss_rev HepaticSinusoidalEndothelialCellsD1- bigWig Hepatic Sinusoidal Endothelial Cells, donor1_CNhs12075_11521-119H9_reverse 0 2452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11521-119H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor1.CNhs12075.11521-119H9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Hepatic Sinusoidal Endothelial Cells, donor1_CNhs12075_11521-119H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11521-119H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticSinusoidalEndothelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticSinusoidalEndothelialCellsDonor1_CNhs12075_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11521-119H9\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor1_CNhs12075_tpm_rev HepaticSinusoidalEndothelialCellsD1- bigWig Hepatic Sinusoidal Endothelial Cells, donor1_CNhs12075_11521-119H9_reverse 1 2452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11521-119H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor1.CNhs12075.11521-119H9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Hepatic Sinusoidal Endothelial Cells, donor1_CNhs12075_11521-119H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11521-119H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticSinusoidalEndothelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticSinusoidalEndothelialCellsDonor1_CNhs12075_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11521-119H9\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_ctss_fwd HepaticSinusoidalEndothelialCellsD2+ bigWig Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_forward 0 2453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor2.CNhs12092.11601-120H8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11601-120H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticSinusoidalEndothelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_tpm_fwd HepaticSinusoidalEndothelialCellsD2+ bigWig Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_forward 1 2453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor2.CNhs12092.11601-120H8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11601-120H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticSinusoidalEndothelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_ctss_rev HepaticSinusoidalEndothelialCellsD2- bigWig Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_reverse 0 2454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor2.CNhs12092.11601-120H8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11601-120H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticSinusoidalEndothelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_tpm_rev HepaticSinusoidalEndothelialCellsD2- bigWig Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_reverse 1 2454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor2.CNhs12092.11601-120H8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11601-120H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticSinusoidalEndothelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_ctss_fwd HepaticSinusoidalEndothelialCellsD3+ bigWig Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_forward 0 2455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor3.CNhs12625.11682-122H8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11682-122H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticSinusoidalEndothelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_tpm_fwd HepaticSinusoidalEndothelialCellsD3+ bigWig Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_forward 1 2455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor3.CNhs12625.11682-122H8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11682-122H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticSinusoidalEndothelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_ctss_rev HepaticSinusoidalEndothelialCellsD3- bigWig Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_reverse 0 2456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor3.CNhs12625.11682-122H8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11682-122H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticSinusoidalEndothelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_tpm_rev HepaticSinusoidalEndothelialCellsD3- bigWig Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_reverse 1 2456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor3.CNhs12625.11682-122H8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11682-122H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticSinusoidalEndothelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor1_CNhs11335_ctss_fwd HepaticStellateCellsD1+ bigWig Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_forward 0 2457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor1.CNhs11335.11524-119I3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11524-119I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor1_CNhs11335_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor1_CNhs11335_tpm_fwd HepaticStellateCellsD1+ bigWig Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_forward 1 2457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor1.CNhs11335.11524-119I3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11524-119I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor1_CNhs11335_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor1_CNhs11335_ctss_rev HepaticStellateCellsD1- bigWig Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_reverse 0 2458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor1.CNhs11335.11524-119I3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11524-119I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor1_CNhs11335_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor1_CNhs11335_tpm_rev HepaticStellateCellsD1- bigWig Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_reverse 1 2458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor1.CNhs11335.11524-119I3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11524-119I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor1_CNhs11335_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor2_CNhs12093_ctss_fwd HepaticStellateCellsD2+ bigWig Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_forward 0 2459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor2.CNhs12093.11604-120I2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11604-120I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor2_CNhs12093_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor2_CNhs12093_tpm_fwd HepaticStellateCellsD2+ bigWig Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_forward 1 2459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor2.CNhs12093.11604-120I2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11604-120I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor2_CNhs12093_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor2_CNhs12093_ctss_rev HepaticStellateCellsD2- bigWig Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_reverse 0 2460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor2.CNhs12093.11604-120I2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11604-120I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor2_CNhs12093_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor2_CNhs12093_tpm_rev HepaticStellateCellsD2- bigWig Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_reverse 1 2460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor2.CNhs12093.11604-120I2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11604-120I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor2_CNhs12093_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor3_CNhs12627_ctss_fwd HepaticStellateCellsD3+ bigWig Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_forward 0 2461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor3.CNhs12627.11685-122I2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11685-122I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor3_CNhs12627_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor3_CNhs12627_tpm_fwd HepaticStellateCellsD3+ bigWig Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_forward 1 2461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor3.CNhs12627.11685-122I2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11685-122I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor3_CNhs12627_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor3_CNhs12627_ctss_rev HepaticStellateCellsD3- bigWig Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_reverse 0 2462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor3.CNhs12627.11685-122I2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11685-122I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor3_CNhs12627_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor3_CNhs12627_tpm_rev HepaticStellateCellsD3- bigWig Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_reverse 1 2462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor3.CNhs12627.11685-122I2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11685-122I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor3_CNhs12627_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2\ urlLabel FANTOM5 Details:\ HepatocyteDonor1_CNhs12340_ctss_fwd HepatocyteD1+ bigWig Hepatocyte, donor1_CNhs12340_11523-119I2_forward 0 2463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatocyte%2c%20donor1.CNhs12340.11523-119I2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor1_CNhs12340_11523-119I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11523-119I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor1_CNhs12340_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2\ urlLabel FANTOM5 Details:\ HepatocyteDonor1_CNhs12340_tpm_fwd HepatocyteD1+ bigWig Hepatocyte, donor1_CNhs12340_11523-119I2_forward 1 2463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatocyte%2c%20donor1.CNhs12340.11523-119I2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor1_CNhs12340_11523-119I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11523-119I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor1_CNhs12340_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2\ urlLabel FANTOM5 Details:\ HepatocyteDonor1_CNhs12340_ctss_rev HepatocyteD1- bigWig Hepatocyte, donor1_CNhs12340_11523-119I2_reverse 0 2464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatocyte%2c%20donor1.CNhs12340.11523-119I2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor1_CNhs12340_11523-119I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11523-119I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor1_CNhs12340_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2\ urlLabel FANTOM5 Details:\ HepatocyteDonor1_CNhs12340_tpm_rev HepatocyteD1- bigWig Hepatocyte, donor1_CNhs12340_11523-119I2_reverse 1 2464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatocyte%2c%20donor1.CNhs12340.11523-119I2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor1_CNhs12340_11523-119I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11523-119I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor1_CNhs12340_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2\ urlLabel FANTOM5 Details:\ HepatocyteDonor2_CNhs12349_ctss_fwd HepatocyteD2+ bigWig Hepatocyte, donor2_CNhs12349_11603-120I1_forward 0 2465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatocyte%2c%20donor2.CNhs12349.11603-120I1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor2_CNhs12349_11603-120I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11603-120I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor2_CNhs12349_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor2_CNhs12349_tpm_fwd HepatocyteD2+ bigWig Hepatocyte, donor2_CNhs12349_11603-120I1_forward 1 2465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatocyte%2c%20donor2.CNhs12349.11603-120I1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor2_CNhs12349_11603-120I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11603-120I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor2_CNhs12349_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor2_CNhs12349_ctss_rev HepatocyteD2- bigWig Hepatocyte, donor2_CNhs12349_11603-120I1_reverse 0 2466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatocyte%2c%20donor2.CNhs12349.11603-120I1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor2_CNhs12349_11603-120I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11603-120I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor2_CNhs12349_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor2_CNhs12349_tpm_rev HepatocyteD2- bigWig Hepatocyte, donor2_CNhs12349_11603-120I1_reverse 1 2466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatocyte%2c%20donor2.CNhs12349.11603-120I1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor2_CNhs12349_11603-120I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11603-120I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor2_CNhs12349_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor3_CNhs12626_ctss_fwd HepatocyteD3+ bigWig Hepatocyte, donor3_CNhs12626_11684-122I1_forward 0 2467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatocyte%2c%20donor3.CNhs12626.11684-122I1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor3_CNhs12626_11684-122I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11684-122I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor3_CNhs12626_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor3_CNhs12626_tpm_fwd HepatocyteD3+ bigWig Hepatocyte, donor3_CNhs12626_11684-122I1_forward 1 2467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatocyte%2c%20donor3.CNhs12626.11684-122I1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor3_CNhs12626_11684-122I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11684-122I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor3_CNhs12626_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor3_CNhs12626_ctss_rev HepatocyteD3- bigWig Hepatocyte, donor3_CNhs12626_11684-122I1_reverse 0 2468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatocyte%2c%20donor3.CNhs12626.11684-122I1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor3_CNhs12626_11684-122I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11684-122I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor3_CNhs12626_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor3_CNhs12626_tpm_rev HepatocyteD3- bigWig Hepatocyte, donor3_CNhs12626_11684-122I1_reverse 1 2468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Hepatocyte%2c%20donor3.CNhs12626.11684-122I1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor3_CNhs12626_11684-122I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11684-122I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor3_CNhs12626_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor1_CNhs13537_ctss_fwd ImmatureLangerhansCellsD1+ bigWig immature langerhans cells, donor1_CNhs13537_11904-125F5_forward 0 2469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/immature%20langerhans%20cells%2c%20donor1.CNhs13537.11904-125F5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel immature langerhans cells, donor1_CNhs13537_11904-125F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11904-125F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ImmatureLangerhansCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ImmatureLangerhansCellsDonor1_CNhs13537_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor1_CNhs13537_tpm_fwd ImmatureLangerhansCellsD1+ bigWig immature langerhans cells, donor1_CNhs13537_11904-125F5_forward 1 2469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/immature%20langerhans%20cells%2c%20donor1.CNhs13537.11904-125F5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel immature langerhans cells, donor1_CNhs13537_11904-125F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11904-125F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ImmatureLangerhansCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ImmatureLangerhansCellsDonor1_CNhs13537_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor1_CNhs13537_ctss_rev ImmatureLangerhansCellsD1- bigWig immature langerhans cells, donor1_CNhs13537_11904-125F5_reverse 0 2470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/immature%20langerhans%20cells%2c%20donor1.CNhs13537.11904-125F5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel immature langerhans cells, donor1_CNhs13537_11904-125F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11904-125F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ImmatureLangerhansCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ImmatureLangerhansCellsDonor1_CNhs13537_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor1_CNhs13537_tpm_rev ImmatureLangerhansCellsD1- bigWig immature langerhans cells, donor1_CNhs13537_11904-125F5_reverse 1 2470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/immature%20langerhans%20cells%2c%20donor1.CNhs13537.11904-125F5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel immature langerhans cells, donor1_CNhs13537_11904-125F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11904-125F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ImmatureLangerhansCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ImmatureLangerhansCellsDonor1_CNhs13537_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor2_CNhs13480_ctss_fwd ImmatureLangerhansCellsD2+ bigWig immature langerhans cells, donor2_CNhs13480_11905-125F6_forward 0 2471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/immature%20langerhans%20cells%2c%20donor2.CNhs13480.11905-125F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel immature langerhans cells, donor2_CNhs13480_11905-125F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11905-125F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ImmatureLangerhansCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ImmatureLangerhansCellsDonor2_CNhs13480_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor2_CNhs13480_tpm_fwd ImmatureLangerhansCellsD2+ bigWig immature langerhans cells, donor2_CNhs13480_11905-125F6_forward 1 2471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/immature%20langerhans%20cells%2c%20donor2.CNhs13480.11905-125F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel immature langerhans cells, donor2_CNhs13480_11905-125F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11905-125F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ImmatureLangerhansCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ImmatureLangerhansCellsDonor2_CNhs13480_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor2_CNhs13480_ctss_rev ImmatureLangerhansCellsD2- bigWig immature langerhans cells, donor2_CNhs13480_11905-125F6_reverse 0 2472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/immature%20langerhans%20cells%2c%20donor2.CNhs13480.11905-125F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel immature langerhans cells, donor2_CNhs13480_11905-125F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11905-125F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ImmatureLangerhansCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ImmatureLangerhansCellsDonor2_CNhs13480_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor2_CNhs13480_tpm_rev ImmatureLangerhansCellsD2- bigWig immature langerhans cells, donor2_CNhs13480_11905-125F6_reverse 1 2472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/immature%20langerhans%20cells%2c%20donor2.CNhs13480.11905-125F6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel immature langerhans cells, donor2_CNhs13480_11905-125F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11905-125F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ImmatureLangerhansCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ImmatureLangerhansCellsDonor2_CNhs13480_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6\ urlLabel FANTOM5 Details:\ IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_ctss_fwd IntestinalEpithelialCellsD1+ bigWig Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_forward 0 2473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.CNhs10875.11246-116E4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11246-116E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IntestinalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4\ urlLabel FANTOM5 Details:\ IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_tpm_fwd IntestinalEpithelialCellsD1+ bigWig Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_forward 1 2473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.CNhs10875.11246-116E4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11246-116E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IntestinalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4\ urlLabel FANTOM5 Details:\ IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_ctss_rev IntestinalEpithelialCellsD1- bigWig Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_reverse 0 2474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.CNhs10875.11246-116E4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11246-116E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IntestinalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4\ urlLabel FANTOM5 Details:\ IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_tpm_rev IntestinalEpithelialCellsD1- bigWig Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_reverse 1 2474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.CNhs10875.11246-116E4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11246-116E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IntestinalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4\ urlLabel FANTOM5 Details:\ IrisPigmentEpithelialCellsDonor1_CNhs12596_ctss_fwd IrisPigmentEpithelialCellsD1+ bigWig Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_forward 0 2475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Iris%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs12596.11530-119I9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11530-119I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IrisPigmentEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track IrisPigmentEpithelialCellsDonor1_CNhs12596_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9\ urlLabel FANTOM5 Details:\ IrisPigmentEpithelialCellsDonor1_CNhs12596_tpm_fwd IrisPigmentEpithelialCellsD1+ bigWig Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_forward 1 2475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Iris%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs12596.11530-119I9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11530-119I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IrisPigmentEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track IrisPigmentEpithelialCellsDonor1_CNhs12596_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9\ urlLabel FANTOM5 Details:\ IrisPigmentEpithelialCellsDonor1_CNhs12596_ctss_rev IrisPigmentEpithelialCellsD1- bigWig Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_reverse 0 2476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Iris%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs12596.11530-119I9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11530-119I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IrisPigmentEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track IrisPigmentEpithelialCellsDonor1_CNhs12596_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9\ urlLabel FANTOM5 Details:\ IrisPigmentEpithelialCellsDonor1_CNhs12596_tpm_rev IrisPigmentEpithelialCellsD1- bigWig Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_reverse 1 2476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Iris%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs12596.11530-119I9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11530-119I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IrisPigmentEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track IrisPigmentEpithelialCellsDonor1_CNhs12596_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor1_CNhs11064_ctss_fwd KeratinocyteEpidermalD1+ bigWig Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_forward 0 2477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratinocyte%20-%20epidermal%2c%20donor1.CNhs11064.11272-116H3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11272-116H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor1_CNhs11064_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor1_CNhs11064_tpm_fwd KeratinocyteEpidermalD1+ bigWig Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_forward 1 2477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratinocyte%20-%20epidermal%2c%20donor1.CNhs11064.11272-116H3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11272-116H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor1_CNhs11064_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor1_CNhs11064_ctss_rev KeratinocyteEpidermalD1- bigWig Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_reverse 0 2478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratinocyte%20-%20epidermal%2c%20donor1.CNhs11064.11272-116H3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11272-116H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor1_CNhs11064_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor1_CNhs11064_tpm_rev KeratinocyteEpidermalD1- bigWig Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_reverse 1 2478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratinocyte%20-%20epidermal%2c%20donor1.CNhs11064.11272-116H3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11272-116H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor1_CNhs11064_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor2_CNhs11381_ctss_fwd KeratinocyteEpidermalD2+ bigWig Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_forward 0 2479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratinocyte%20-%20epidermal%2c%20donor2.CNhs11381.11349-117G8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11349-117G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor2_CNhs11381_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor2_CNhs11381_tpm_fwd KeratinocyteEpidermalD2+ bigWig Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_forward 1 2479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratinocyte%20-%20epidermal%2c%20donor2.CNhs11381.11349-117G8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11349-117G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor2_CNhs11381_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor2_CNhs11381_ctss_rev KeratinocyteEpidermalD2- bigWig Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_reverse 0 2480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratinocyte%20-%20epidermal%2c%20donor2.CNhs11381.11349-117G8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11349-117G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor2_CNhs11381_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor2_CNhs11381_tpm_rev KeratinocyteEpidermalD2- bigWig Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_reverse 1 2480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratinocyte%20-%20epidermal%2c%20donor2.CNhs11381.11349-117G8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11349-117G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor2_CNhs11381_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor3_CNhs12031_ctss_fwd KeratinocyteEpidermalD3+ bigWig Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_forward 0 2481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratinocyte%20-%20epidermal%2c%20donor3.CNhs12031.11421-118F8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11421-118F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor3_CNhs12031_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor3_CNhs12031_tpm_fwd KeratinocyteEpidermalD3+ bigWig Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_forward 1 2481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratinocyte%20-%20epidermal%2c%20donor3.CNhs12031.11421-118F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11421-118F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor3_CNhs12031_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor3_CNhs12031_ctss_rev KeratinocyteEpidermalD3- bigWig Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_reverse 0 2482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratinocyte%20-%20epidermal%2c%20donor3.CNhs12031.11421-118F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11421-118F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor3_CNhs12031_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor3_CNhs12031_tpm_rev KeratinocyteEpidermalD3- bigWig Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_reverse 1 2482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratinocyte%20-%20epidermal%2c%20donor3.CNhs12031.11421-118F8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11421-118F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor3_CNhs12031_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8\ urlLabel FANTOM5 Details:\ KeratinocyteOralDonor1_CNhs10879_ctss_fwd KeratinocyteOralD1+ bigWig Keratinocyte - oral, donor1_CNhs10879_11251-116E9_forward 0 2483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratinocyte%20-%20oral%2c%20donor1.CNhs10879.11251-116E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - oral, donor1_CNhs10879_11251-116E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11251-116E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteOralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteOralDonor1_CNhs10879_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9\ urlLabel FANTOM5 Details:\ KeratinocyteOralDonor1_CNhs10879_tpm_fwd KeratinocyteOralD1+ bigWig Keratinocyte - oral, donor1_CNhs10879_11251-116E9_forward 1 2483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratinocyte%20-%20oral%2c%20donor1.CNhs10879.11251-116E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - oral, donor1_CNhs10879_11251-116E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11251-116E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteOralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteOralDonor1_CNhs10879_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9\ urlLabel FANTOM5 Details:\ KeratinocyteOralDonor1_CNhs10879_ctss_rev KeratinocyteOralD1- bigWig Keratinocyte - oral, donor1_CNhs10879_11251-116E9_reverse 0 2484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratinocyte%20-%20oral%2c%20donor1.CNhs10879.11251-116E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Keratinocyte - oral, donor1_CNhs10879_11251-116E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11251-116E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteOralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteOralDonor1_CNhs10879_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9\ urlLabel FANTOM5 Details:\ KeratinocyteOralDonor1_CNhs10879_tpm_rev KeratinocyteOralD1- bigWig Keratinocyte - oral, donor1_CNhs10879_11251-116E9_reverse 1 2484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratinocyte%20-%20oral%2c%20donor1.CNhs10879.11251-116E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Keratinocyte - oral, donor1_CNhs10879_11251-116E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11251-116E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteOralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteOralDonor1_CNhs10879_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9\ urlLabel FANTOM5 Details:\ KeratocytesDonor1_CNhs11337_ctss_fwd KeratocytesD1+ bigWig Keratocytes, donor1_CNhs11337_11527-119I6_forward 0 2485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratocytes%2c%20donor1.CNhs11337.11527-119I6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor1_CNhs11337_11527-119I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11527-119I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor1_CNhs11337_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6\ urlLabel FANTOM5 Details:\ KeratocytesDonor1_CNhs11337_tpm_fwd KeratocytesD1+ bigWig Keratocytes, donor1_CNhs11337_11527-119I6_forward 1 2485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratocytes%2c%20donor1.CNhs11337.11527-119I6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor1_CNhs11337_11527-119I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11527-119I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor1_CNhs11337_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6\ urlLabel FANTOM5 Details:\ KeratocytesDonor1_CNhs11337_ctss_rev KeratocytesD1- bigWig Keratocytes, donor1_CNhs11337_11527-119I6_reverse 0 2486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratocytes%2c%20donor1.CNhs11337.11527-119I6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor1_CNhs11337_11527-119I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11527-119I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor1_CNhs11337_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6\ urlLabel FANTOM5 Details:\ KeratocytesDonor1_CNhs11337_tpm_rev KeratocytesD1- bigWig Keratocytes, donor1_CNhs11337_11527-119I6_reverse 1 2486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratocytes%2c%20donor1.CNhs11337.11527-119I6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor1_CNhs11337_11527-119I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11527-119I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor1_CNhs11337_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6\ urlLabel FANTOM5 Details:\ KeratocytesDonor2_CNhs12095_ctss_fwd KeratocytesD2+ bigWig Keratocytes, donor2_CNhs12095_11607-120I5_forward 0 2487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratocytes%2c%20donor2.CNhs12095.11607-120I5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor2_CNhs12095_11607-120I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11607-120I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor2_CNhs12095_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor2_CNhs12095_tpm_fwd KeratocytesD2+ bigWig Keratocytes, donor2_CNhs12095_11607-120I5_forward 1 2487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratocytes%2c%20donor2.CNhs12095.11607-120I5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor2_CNhs12095_11607-120I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11607-120I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor2_CNhs12095_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor2_CNhs12095_ctss_rev KeratocytesD2- bigWig Keratocytes, donor2_CNhs12095_11607-120I5_reverse 0 2488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratocytes%2c%20donor2.CNhs12095.11607-120I5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor2_CNhs12095_11607-120I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11607-120I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor2_CNhs12095_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor2_CNhs12095_tpm_rev KeratocytesD2- bigWig Keratocytes, donor2_CNhs12095_11607-120I5_reverse 1 2488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratocytes%2c%20donor2.CNhs12095.11607-120I5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor2_CNhs12095_11607-120I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11607-120I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor2_CNhs12095_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor3_CNhs12921_ctss_fwd KeratocytesD3+ bigWig Keratocytes, donor3_CNhs12921_11688-122I5_forward 0 2489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratocytes%2c%20donor3.CNhs12921.11688-122I5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor3_CNhs12921_11688-122I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11688-122I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor3_CNhs12921_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor3_CNhs12921_tpm_fwd KeratocytesD3+ bigWig Keratocytes, donor3_CNhs12921_11688-122I5_forward 1 2489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratocytes%2c%20donor3.CNhs12921.11688-122I5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor3_CNhs12921_11688-122I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11688-122I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor3_CNhs12921_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor3_CNhs12921_ctss_rev KeratocytesD3- bigWig Keratocytes, donor3_CNhs12921_11688-122I5_reverse 0 2490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratocytes%2c%20donor3.CNhs12921.11688-122I5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor3_CNhs12921_11688-122I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11688-122I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor3_CNhs12921_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor3_CNhs12921_tpm_rev KeratocytesD3- bigWig Keratocytes, donor3_CNhs12921_11688-122I5_reverse 1 2490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Keratocytes%2c%20donor3.CNhs12921.11688-122I5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor3_CNhs12921_11688-122I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11688-122I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor3_CNhs12921_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor1_CNhs12342_ctss_fwd LensEpithelialCellsD1+ bigWig Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_forward 0 2491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lens%20Epithelial%20Cells%2c%20donor1.CNhs12342.11529-119I8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11529-119I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor1_CNhs12342_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor1_CNhs12342_tpm_fwd LensEpithelialCellsD1+ bigWig Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_forward 1 2491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lens%20Epithelial%20Cells%2c%20donor1.CNhs12342.11529-119I8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11529-119I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor1_CNhs12342_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor1_CNhs12342_ctss_rev LensEpithelialCellsD1- bigWig Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_reverse 0 2492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lens%20Epithelial%20Cells%2c%20donor1.CNhs12342.11529-119I8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11529-119I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor1_CNhs12342_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor1_CNhs12342_tpm_rev LensEpithelialCellsD1- bigWig Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_reverse 1 2492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lens%20Epithelial%20Cells%2c%20donor1.CNhs12342.11529-119I8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11529-119I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor1_CNhs12342_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor2_CNhs12568_ctss_fwd LensEpithelialCellsD2+ bigWig Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_forward 0 2493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lens%20Epithelial%20Cells%2c%20donor2.CNhs12568.11609-120I7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11609-120I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor2_CNhs12568_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor2_CNhs12568_tpm_fwd LensEpithelialCellsD2+ bigWig Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_forward 1 2493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lens%20Epithelial%20Cells%2c%20donor2.CNhs12568.11609-120I7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11609-120I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor2_CNhs12568_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor2_CNhs12568_ctss_rev LensEpithelialCellsD2- bigWig Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_reverse 0 2494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lens%20Epithelial%20Cells%2c%20donor2.CNhs12568.11609-120I7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11609-120I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor2_CNhs12568_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor2_CNhs12568_tpm_rev LensEpithelialCellsD2- bigWig Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_reverse 1 2494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lens%20Epithelial%20Cells%2c%20donor2.CNhs12568.11609-120I7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11609-120I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor2_CNhs12568_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor3_CNhs12572_ctss_fwd LensEpithelialCellsD3+ bigWig Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_forward 0 2495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lens%20Epithelial%20Cells%2c%20donor3.CNhs12572.11690-122I7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11690-122I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor3_CNhs12572_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor3_CNhs12572_tpm_fwd LensEpithelialCellsD3+ bigWig Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_forward 1 2495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lens%20Epithelial%20Cells%2c%20donor3.CNhs12572.11690-122I7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11690-122I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor3_CNhs12572_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor3_CNhs12572_ctss_rev LensEpithelialCellsD3- bigWig Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_reverse 0 2496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lens%20Epithelial%20Cells%2c%20donor3.CNhs12572.11690-122I7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11690-122I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor3_CNhs12572_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor3_CNhs12572_tpm_rev LensEpithelialCellsD3- bigWig Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_reverse 1 2496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Lens%20Epithelial%20Cells%2c%20donor3.CNhs12572.11690-122I7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11690-122I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor3_CNhs12572_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor1_CNhs10861_ctss_fwd MacrophageMonocyteD1+ bigWig Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_forward 0 2497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor1.CNhs10861.11232-116C8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11232-116C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor1_CNhs10861_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor1_CNhs10861_tpm_fwd MacrophageMonocyteD1+ bigWig Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_forward 1 2497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor1.CNhs10861.11232-116C8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11232-116C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor1_CNhs10861_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor1_CNhs10861_ctss_rev MacrophageMonocyteD1- bigWig Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_reverse 0 2498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor1.CNhs10861.11232-116C8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11232-116C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor1_CNhs10861_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor1_CNhs10861_tpm_rev MacrophageMonocyteD1- bigWig Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_reverse 1 2498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor1.CNhs10861.11232-116C8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11232-116C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor1_CNhs10861_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor2_CNhs11899_ctss_fwd MacrophageMonocyteD2+ bigWig Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_forward 0 2499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor2.CNhs11899.11313-117C8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11313-117C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor2_CNhs11899_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor2_CNhs11899_tpm_fwd MacrophageMonocyteD2+ bigWig Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_forward 1 2499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor2.CNhs11899.11313-117C8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11313-117C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor2_CNhs11899_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor2_CNhs11899_ctss_rev MacrophageMonocyteD2- bigWig Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_reverse 0 2500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor2.CNhs11899.11313-117C8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11313-117C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor2_CNhs11899_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor2_CNhs11899_tpm_rev MacrophageMonocyteD2- bigWig Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_reverse 1 2500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor2.CNhs11899.11313-117C8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11313-117C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor2_CNhs11899_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor3_CNhs12003_ctss_fwd MacrophageMonocyteD3+ bigWig Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_forward 0 2501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor3.CNhs12003.11389-118C3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11389-118C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor3_CNhs12003_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor3_CNhs12003_tpm_fwd MacrophageMonocyteD3+ bigWig Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_forward 1 2501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor3.CNhs12003.11389-118C3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11389-118C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor3_CNhs12003_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor3_CNhs12003_ctss_rev MacrophageMonocyteD3- bigWig Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_reverse 0 2502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor3.CNhs12003.11389-118C3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11389-118C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor3_CNhs12003_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor3_CNhs12003_tpm_rev MacrophageMonocyteD3- bigWig Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_reverse 1 2502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor3.CNhs12003.11389-118C3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11389-118C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor3_CNhs12003_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor2_CNhs13550_ctss_fwd MallassezCellsD2+ bigWig Mallassez-derived cells, donor2_CNhs13550_11929-125I3_forward 0 2503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mallassez-derived%20cells%2c%20donor2.CNhs13550.11929-125I3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor2_CNhs13550_11929-125I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11929-125I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor2_CNhs13550_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor2_CNhs13550_tpm_fwd MallassezCellsD2+ bigWig Mallassez-derived cells, donor2_CNhs13550_11929-125I3_forward 1 2503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mallassez-derived%20cells%2c%20donor2.CNhs13550.11929-125I3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor2_CNhs13550_11929-125I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11929-125I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor2_CNhs13550_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor2_CNhs13550_ctss_rev MallassezCellsD2- bigWig Mallassez-derived cells, donor2_CNhs13550_11929-125I3_reverse 0 2504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mallassez-derived%20cells%2c%20donor2.CNhs13550.11929-125I3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor2_CNhs13550_11929-125I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11929-125I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor2_CNhs13550_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor2_CNhs13550_tpm_rev MallassezCellsD2- bigWig Mallassez-derived cells, donor2_CNhs13550_11929-125I3_reverse 1 2504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mallassez-derived%20cells%2c%20donor2.CNhs13550.11929-125I3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor2_CNhs13550_11929-125I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11929-125I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor2_CNhs13550_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor3_CNhs13551_ctss_fwd MallassezCellsD3+ bigWig Mallassez-derived cells, donor3_CNhs13551_11930-125I4_forward 0 2505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mallassez-derived%20cells%2c%20donor3.CNhs13551.11930-125I4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor3_CNhs13551_11930-125I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11930-125I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor3_CNhs13551_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor3_CNhs13551_tpm_fwd MallassezCellsD3+ bigWig Mallassez-derived cells, donor3_CNhs13551_11930-125I4_forward 1 2505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mallassez-derived%20cells%2c%20donor3.CNhs13551.11930-125I4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor3_CNhs13551_11930-125I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11930-125I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor3_CNhs13551_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor3_CNhs13551_ctss_rev MallassezCellsD3- bigWig Mallassez-derived cells, donor3_CNhs13551_11930-125I4_reverse 0 2506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mallassez-derived%20cells%2c%20donor3.CNhs13551.11930-125I4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor3_CNhs13551_11930-125I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11930-125I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor3_CNhs13551_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor3_CNhs13551_tpm_rev MallassezCellsD3- bigWig Mallassez-derived cells, donor3_CNhs13551_11930-125I4_reverse 1 2506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mallassez-derived%20cells%2c%20donor3.CNhs13551.11930-125I4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor3_CNhs13551_11930-125I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11930-125I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor3_CNhs13551_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor1_CNhs11077_ctss_fwd MammaryEpithelialCellD1+ bigWig Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_forward 0 2507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mammary%20Epithelial%20Cell%2c%20donor1.CNhs11077.11273-116H4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11273-116H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor1_CNhs11077_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor1_CNhs11077_tpm_fwd MammaryEpithelialCellD1+ bigWig Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_forward 1 2507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mammary%20Epithelial%20Cell%2c%20donor1.CNhs11077.11273-116H4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11273-116H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor1_CNhs11077_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor1_CNhs11077_ctss_rev MammaryEpithelialCellD1- bigWig Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_reverse 0 2508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mammary%20Epithelial%20Cell%2c%20donor1.CNhs11077.11273-116H4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11273-116H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor1_CNhs11077_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor1_CNhs11077_tpm_rev MammaryEpithelialCellD1- bigWig Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_reverse 1 2508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mammary%20Epithelial%20Cell%2c%20donor1.CNhs11077.11273-116H4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11273-116H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor1_CNhs11077_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor2_CNhs11382_ctss_fwd MammaryEpithelialCellD2+ bigWig Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_forward 0 2509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mammary%20Epithelial%20Cell%2c%20donor2.CNhs11382.11350-117G9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11350-117G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor2_CNhs11382_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor2_CNhs11382_tpm_fwd MammaryEpithelialCellD2+ bigWig Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_forward 1 2509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mammary%20Epithelial%20Cell%2c%20donor2.CNhs11382.11350-117G9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11350-117G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor2_CNhs11382_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor2_CNhs11382_ctss_rev MammaryEpithelialCellD2- bigWig Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_reverse 0 2510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mammary%20Epithelial%20Cell%2c%20donor2.CNhs11382.11350-117G9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11350-117G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor2_CNhs11382_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor2_CNhs11382_tpm_rev MammaryEpithelialCellD2- bigWig Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_reverse 1 2510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mammary%20Epithelial%20Cell%2c%20donor2.CNhs11382.11350-117G9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11350-117G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor2_CNhs11382_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor3_CNhs12032_ctss_fwd MammaryEpithelialCellD3+ bigWig Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_forward 0 2511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mammary%20Epithelial%20Cell%2c%20donor3.CNhs12032.11422-118F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11422-118F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor3_CNhs12032_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor3_CNhs12032_tpm_fwd MammaryEpithelialCellD3+ bigWig Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_forward 1 2511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mammary%20Epithelial%20Cell%2c%20donor3.CNhs12032.11422-118F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11422-118F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor3_CNhs12032_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor3_CNhs12032_ctss_rev MammaryEpithelialCellD3- bigWig Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_reverse 0 2512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mammary%20Epithelial%20Cell%2c%20donor3.CNhs12032.11422-118F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11422-118F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor3_CNhs12032_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor3_CNhs12032_tpm_rev MammaryEpithelialCellD3- bigWig Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_reverse 1 2512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mammary%20Epithelial%20Cell%2c%20donor3.CNhs12032.11422-118F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11422-118F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor3_CNhs12032_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9\ urlLabel FANTOM5 Details:\ MastCellDonor1_CNhs12566_ctss_fwd MastCellD1+ bigWig Mast cell, donor1_CNhs12566_11563-120D6_forward 0 2513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20donor1.CNhs12566.11563-120D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor1_CNhs12566_11563-120D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11563-120D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor1_CNhs12566_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6\ urlLabel FANTOM5 Details:\ MastCellDonor1_CNhs12566_tpm_fwd MastCellD1+ bigWig Mast cell, donor1_CNhs12566_11563-120D6_forward 1 2513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20donor1.CNhs12566.11563-120D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor1_CNhs12566_11563-120D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11563-120D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor1_CNhs12566_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6\ urlLabel FANTOM5 Details:\ MastCellDonor1_CNhs12566_ctss_rev MastCellD1- bigWig Mast cell, donor1_CNhs12566_11563-120D6_reverse 0 2514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20donor1.CNhs12566.11563-120D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, donor1_CNhs12566_11563-120D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11563-120D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor1_CNhs12566_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6\ urlLabel FANTOM5 Details:\ MastCellDonor1_CNhs12566_tpm_rev MastCellD1- bigWig Mast cell, donor1_CNhs12566_11563-120D6_reverse 1 2514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20donor1.CNhs12566.11563-120D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, donor1_CNhs12566_11563-120D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11563-120D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor1_CNhs12566_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6\ urlLabel FANTOM5 Details:\ MastCellDonor2_CNhs12594_ctss_fwd MastCellD2+ bigWig Mast cell, donor2_CNhs12594_11565-120D8_forward 0 2515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20donor2.CNhs12594.11565-120D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor2_CNhs12594_11565-120D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11565-120D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor2_CNhs12594_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8\ urlLabel FANTOM5 Details:\ MastCellDonor2_CNhs12594_tpm_fwd MastCellD2+ bigWig Mast cell, donor2_CNhs12594_11565-120D8_forward 1 2515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20donor2.CNhs12594.11565-120D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor2_CNhs12594_11565-120D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11565-120D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor2_CNhs12594_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8\ urlLabel FANTOM5 Details:\ MastCellDonor2_CNhs12594_ctss_rev MastCellD2- bigWig Mast cell, donor2_CNhs12594_11565-120D8_reverse 0 2516 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20donor2.CNhs12594.11565-120D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, donor2_CNhs12594_11565-120D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11565-120D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor2_CNhs12594_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8\ urlLabel FANTOM5 Details:\ MastCellDonor2_CNhs12594_tpm_rev MastCellD2- bigWig Mast cell, donor2_CNhs12594_11565-120D8_reverse 1 2516 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20donor2.CNhs12594.11565-120D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, donor2_CNhs12594_11565-120D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11565-120D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor2_CNhs12594_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8\ urlLabel FANTOM5 Details:\ MastCellDonor3_CNhs12593_ctss_fwd MastCellD3+ bigWig Mast cell, donor3_CNhs12593_11566-120D9_forward 0 2517 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20donor3.CNhs12593.11566-120D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor3_CNhs12593_11566-120D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11566-120D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor3_CNhs12593_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9\ urlLabel FANTOM5 Details:\ MastCellDonor3_CNhs12593_tpm_fwd MastCellD3+ bigWig Mast cell, donor3_CNhs12593_11566-120D9_forward 1 2517 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20donor3.CNhs12593.11566-120D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor3_CNhs12593_11566-120D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11566-120D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor3_CNhs12593_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9\ urlLabel FANTOM5 Details:\ MastCellDonor3_CNhs12593_ctss_rev MastCellD3- bigWig Mast cell, donor3_CNhs12593_11566-120D9_reverse 0 2518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20donor3.CNhs12593.11566-120D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, donor3_CNhs12593_11566-120D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11566-120D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor3_CNhs12593_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9\ urlLabel FANTOM5 Details:\ MastCellDonor3_CNhs12593_tpm_rev MastCellD3- bigWig Mast cell, donor3_CNhs12593_11566-120D9_reverse 1 2518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20donor3.CNhs12593.11566-120D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, donor3_CNhs12593_11566-120D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11566-120D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor3_CNhs12593_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9\ urlLabel FANTOM5 Details:\ MastCellDonor4_CNhs12592_ctss_fwd MastCellD4+ bigWig Mast cell, donor4_CNhs12592_11567-120E1_forward 0 2519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20donor4.CNhs12592.11567-120E1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor4_CNhs12592_11567-120E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11567-120E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor4_CNhs12592_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1\ urlLabel FANTOM5 Details:\ MastCellDonor4_CNhs12592_tpm_fwd MastCellD4+ bigWig Mast cell, donor4_CNhs12592_11567-120E1_forward 1 2519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20donor4.CNhs12592.11567-120E1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor4_CNhs12592_11567-120E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11567-120E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor4_CNhs12592_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1\ urlLabel FANTOM5 Details:\ MastCellDonor4_CNhs12592_ctss_rev MastCellD4- bigWig Mast cell, donor4_CNhs12592_11567-120E1_reverse 0 2520 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20donor4.CNhs12592.11567-120E1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, donor4_CNhs12592_11567-120E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11567-120E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor4_CNhs12592_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1\ urlLabel FANTOM5 Details:\ MastCellDonor4_CNhs12592_tpm_rev MastCellD4- bigWig Mast cell, donor4_CNhs12592_11567-120E1_reverse 1 2520 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20donor4.CNhs12592.11567-120E1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, donor4_CNhs12592_11567-120E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11567-120E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor4_CNhs12592_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor5_CNhs13925_ctss_fwd MastCellExpD5+ bigWig Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_forward 0 2521 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor5.CNhs13925.11940-126A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11940-126A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedAndStimulatedDonor5_CNhs13925_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor5_CNhs13925_tpm_fwd MastCellExpD5+ bigWig Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_forward 1 2521 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor5.CNhs13925.11940-126A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11940-126A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedAndStimulatedDonor5_CNhs13925_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor5_CNhs13924_ctss_fwd MastCellExpD5+ bigWig Mast cell, expanded, donor5_CNhs13924_11939-126A4_forward 0 2522 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20expanded%2c%20donor5.CNhs13924.11939-126A4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded, donor5_CNhs13924_11939-126A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11939-126A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedDonor5_CNhs13924_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor5_CNhs13924_tpm_fwd MastCellExpD5+ bigWig Mast cell, expanded, donor5_CNhs13924_11939-126A4_forward 1 2522 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20expanded%2c%20donor5.CNhs13924.11939-126A4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded, donor5_CNhs13924_11939-126A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11939-126A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedDonor5_CNhs13924_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor5_CNhs13925_ctss_rev MastCellExpD5- bigWig Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_reverse 0 2523 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor5.CNhs13925.11940-126A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11940-126A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedAndStimulatedDonor5_CNhs13925_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor5_CNhs13925_tpm_rev MastCellExpD5- bigWig Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_reverse 1 2523 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor5.CNhs13925.11940-126A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11940-126A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedAndStimulatedDonor5_CNhs13925_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor5_CNhs13924_ctss_rev MastCellExpD5- bigWig Mast cell, expanded, donor5_CNhs13924_11939-126A4_reverse 0 2524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20expanded%2c%20donor5.CNhs13924.11939-126A4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded, donor5_CNhs13924_11939-126A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11939-126A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedDonor5_CNhs13924_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor5_CNhs13924_tpm_rev MastCellExpD5- bigWig Mast cell, expanded, donor5_CNhs13924_11939-126A4_reverse 1 2524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20expanded%2c%20donor5.CNhs13924.11939-126A4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded, donor5_CNhs13924_11939-126A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11939-126A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedDonor5_CNhs13924_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor8_CNhs13926_ctss_fwd MastCellExpD8+ bigWig Mast cell, expanded, donor8_CNhs13926_11941-126A6_forward 0 2525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20expanded%2c%20donor8.CNhs13926.11941-126A6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded, donor8_CNhs13926_11941-126A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11941-126A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedDonor8_CNhs13926_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor8_CNhs13927_tpm_fwd MastCellExpD8+ bigWig Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_forward 1 2525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor8.CNhs13927.11942-126A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11942-126A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedAndStimulatedDonor8_CNhs13927_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor8_CNhs13927_ctss_fwd MastCellExpD8+ bigWig Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_forward 0 2526 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor8.CNhs13927.11942-126A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11942-126A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedAndStimulatedDonor8_CNhs13927_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor8_CNhs13926_tpm_fwd MastCellExpD8+ bigWig Mast cell, expanded, donor8_CNhs13926_11941-126A6_forward 1 2526 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20expanded%2c%20donor8.CNhs13926.11941-126A6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded, donor8_CNhs13926_11941-126A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11941-126A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedDonor8_CNhs13926_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor8_CNhs13926_ctss_rev MastCellExpD8- bigWig Mast cell, expanded, donor8_CNhs13926_11941-126A6_reverse 0 2527 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20expanded%2c%20donor8.CNhs13926.11941-126A6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded, donor8_CNhs13926_11941-126A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11941-126A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedDonor8_CNhs13926_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor8_CNhs13927_tpm_rev MastCellExpD8- bigWig Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_reverse 1 2527 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor8.CNhs13927.11942-126A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11942-126A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedAndStimulatedDonor8_CNhs13927_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor8_CNhs13927_ctss_rev MastCellExpD8- bigWig Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_reverse 0 2528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor8.CNhs13927.11942-126A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11942-126A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedAndStimulatedDonor8_CNhs13927_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor8_CNhs13926_tpm_rev MastCellExpD8- bigWig Mast cell, expanded, donor8_CNhs13926_11941-126A6_reverse 1 2528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%2c%20expanded%2c%20donor8.CNhs13926.11941-126A6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded, donor8_CNhs13926_11941-126A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11941-126A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedDonor8_CNhs13926_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6\ urlLabel FANTOM5 Details:\ MastCellStimulatedDonor1_CNhs11073_ctss_fwd MastCellStimulatedD1+ bigWig Mast cell - stimulated, donor1_CNhs11073_11487-119E2_forward 0 2529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%20-%20stimulated%2c%20donor1.CNhs11073.11487-119E2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell - stimulated, donor1_CNhs11073_11487-119E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11487-119E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellStimulatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellStimulatedDonor1_CNhs11073_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2\ urlLabel FANTOM5 Details:\ MastCellStimulatedDonor1_CNhs11073_tpm_fwd MastCellStimulatedD1+ bigWig Mast cell - stimulated, donor1_CNhs11073_11487-119E2_forward 1 2529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%20-%20stimulated%2c%20donor1.CNhs11073.11487-119E2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell - stimulated, donor1_CNhs11073_11487-119E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11487-119E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellStimulatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellStimulatedDonor1_CNhs11073_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2\ urlLabel FANTOM5 Details:\ MastCellStimulatedDonor1_CNhs11073_ctss_rev MastCellStimulatedD1- bigWig Mast cell - stimulated, donor1_CNhs11073_11487-119E2_reverse 0 2530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%20-%20stimulated%2c%20donor1.CNhs11073.11487-119E2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell - stimulated, donor1_CNhs11073_11487-119E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11487-119E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellStimulatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellStimulatedDonor1_CNhs11073_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2\ urlLabel FANTOM5 Details:\ MastCellStimulatedDonor1_CNhs11073_tpm_rev MastCellStimulatedD1- bigWig Mast cell - stimulated, donor1_CNhs11073_11487-119E2_reverse 1 2530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mast%20cell%20-%20stimulated%2c%20donor1.CNhs11073.11487-119E2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell - stimulated, donor1_CNhs11073_11487-119E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11487-119E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellStimulatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellStimulatedDonor1_CNhs11073_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor1_CNhs12591_ctss_fwd MelanocyteDarkD1+ bigWig Melanocyte - dark, donor1_CNhs12591_11502-119F8_forward 0 2531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20dark%2c%20donor1.CNhs12591.11502-119F8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor1_CNhs12591_11502-119F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11502-119F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor1_CNhs12591_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor1_CNhs12591_tpm_fwd MelanocyteDarkD1+ bigWig Melanocyte - dark, donor1_CNhs12591_11502-119F8_forward 1 2531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20dark%2c%20donor1.CNhs12591.11502-119F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor1_CNhs12591_11502-119F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11502-119F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor1_CNhs12591_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor1_CNhs12591_ctss_rev MelanocyteDarkD1- bigWig Melanocyte - dark, donor1_CNhs12591_11502-119F8_reverse 0 2532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20dark%2c%20donor1.CNhs12591.11502-119F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor1_CNhs12591_11502-119F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11502-119F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor1_CNhs12591_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor1_CNhs12591_tpm_rev MelanocyteDarkD1- bigWig Melanocyte - dark, donor1_CNhs12591_11502-119F8_reverse 1 2532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20dark%2c%20donor1.CNhs12591.11502-119F8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor1_CNhs12591_11502-119F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11502-119F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor1_CNhs12591_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor2_CNhs12346_ctss_fwd MelanocyteDarkD2+ bigWig Melanocyte - dark, donor2_CNhs12346_11582-120F7_forward 0 2533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20dark%2c%20donor2.CNhs12346.11582-120F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor2_CNhs12346_11582-120F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11582-120F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor2_CNhs12346_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor2_CNhs12346_tpm_fwd MelanocyteDarkD2+ bigWig Melanocyte - dark, donor2_CNhs12346_11582-120F7_forward 1 2533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20dark%2c%20donor2.CNhs12346.11582-120F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor2_CNhs12346_11582-120F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11582-120F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor2_CNhs12346_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor2_CNhs12346_ctss_rev MelanocyteDarkD2- bigWig Melanocyte - dark, donor2_CNhs12346_11582-120F7_reverse 0 2534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20dark%2c%20donor2.CNhs12346.11582-120F7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor2_CNhs12346_11582-120F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11582-120F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor2_CNhs12346_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor2_CNhs12346_tpm_rev MelanocyteDarkD2- bigWig Melanocyte - dark, donor2_CNhs12346_11582-120F7_reverse 1 2534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20dark%2c%20donor2.CNhs12346.11582-120F7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor2_CNhs12346_11582-120F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11582-120F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor2_CNhs12346_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor3_CNhs12570_ctss_fwd MelanocyteDarkD3+ bigWig Melanocyte - dark, donor3_CNhs12570_11663-122F7_forward 0 2535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20dark%2c%20donor3.CNhs12570.11663-122F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor3_CNhs12570_11663-122F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11663-122F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor3_CNhs12570_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor3_CNhs12570_tpm_fwd MelanocyteDarkD3+ bigWig Melanocyte - dark, donor3_CNhs12570_11663-122F7_forward 1 2535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20dark%2c%20donor3.CNhs12570.11663-122F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor3_CNhs12570_11663-122F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11663-122F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor3_CNhs12570_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor3_CNhs12570_ctss_rev MelanocyteDarkD3- bigWig Melanocyte - dark, donor3_CNhs12570_11663-122F7_reverse 0 2536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20dark%2c%20donor3.CNhs12570.11663-122F7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor3_CNhs12570_11663-122F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11663-122F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor3_CNhs12570_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor3_CNhs12570_tpm_rev MelanocyteDarkD3- bigWig Melanocyte - dark, donor3_CNhs12570_11663-122F7_reverse 1 2536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20dark%2c%20donor3.CNhs12570.11663-122F7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor3_CNhs12570_11663-122F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11663-122F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor3_CNhs12570_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor1_CNhs11303_ctss_fwd MelanocyteLightD1+ bigWig Melanocyte - light, donor1_CNhs11303_11274-116H5_forward 0 2537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20light%2c%20donor1.CNhs11303.11274-116H5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor1_CNhs11303_11274-116H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11274-116H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteLightD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor1_CNhs11303_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor1_CNhs11303_tpm_fwd MelanocyteLightD1+ bigWig Melanocyte - light, donor1_CNhs11303_11274-116H5_forward 1 2537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20light%2c%20donor1.CNhs11303.11274-116H5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor1_CNhs11303_11274-116H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11274-116H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteLightD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor1_CNhs11303_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor1_CNhs11303_ctss_rev MelanocyteLightD1- bigWig Melanocyte - light, donor1_CNhs11303_11274-116H5_reverse 0 2538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20light%2c%20donor1.CNhs11303.11274-116H5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte - light, donor1_CNhs11303_11274-116H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11274-116H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteLightD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteLightDonor1_CNhs11303_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor1_CNhs11303_tpm_rev MelanocyteLightD1- bigWig Melanocyte - light, donor1_CNhs11303_11274-116H5_reverse 1 2538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20light%2c%20donor1.CNhs11303.11274-116H5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte - light, donor1_CNhs11303_11274-116H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11274-116H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteLightD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteLightDonor1_CNhs11303_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor2_CNhs11383_ctss_fwd MelanocyteLightD2+ bigWig Melanocyte - light, donor2_CNhs11383_11351-117H1_forward 0 2539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20light%2c%20donor2.CNhs11383.11351-117H1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor2_CNhs11383_11351-117H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11351-117H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteLightD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor2_CNhs11383_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor2_CNhs11383_tpm_fwd MelanocyteLightD2+ bigWig Melanocyte - light, donor2_CNhs11383_11351-117H1_forward 1 2539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20light%2c%20donor2.CNhs11383.11351-117H1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor2_CNhs11383_11351-117H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11351-117H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteLightD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor2_CNhs11383_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor2_CNhs11383_ctss_rev MelanocyteLightD2- bigWig Melanocyte - light, donor2_CNhs11383_11351-117H1_reverse 0 2540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20light%2c%20donor2.CNhs11383.11351-117H1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte - light, donor2_CNhs11383_11351-117H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11351-117H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteLightD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteLightDonor2_CNhs11383_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor2_CNhs11383_tpm_rev MelanocyteLightD2- bigWig Melanocyte - light, donor2_CNhs11383_11351-117H1_reverse 1 2540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20light%2c%20donor2.CNhs11383.11351-117H1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte - light, donor2_CNhs11383_11351-117H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11351-117H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteLightD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteLightDonor2_CNhs11383_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor3_CNhs12033_ctss_fwd MelanocyteLightD3+ bigWig Melanocyte - light, donor3_CNhs12033_11423-118G1_forward 0 2541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20light%2c%20donor3.CNhs12033.11423-118G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor3_CNhs12033_11423-118G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11423-118G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteLightD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor3_CNhs12033_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor3_CNhs12033_tpm_fwd MelanocyteLightD3+ bigWig Melanocyte - light, donor3_CNhs12033_11423-118G1_forward 1 2541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20light%2c%20donor3.CNhs12033.11423-118G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor3_CNhs12033_11423-118G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11423-118G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteLightD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor3_CNhs12033_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor3_CNhs12033_ctss_rev MelanocyteLightD3- bigWig Melanocyte - light, donor3_CNhs12033_11423-118G1_reverse 0 2542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%20-%20light%2c%20donor3.CNhs12033.11423-118G1.hg19.ctss.rev.bw\ 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sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteLightDonor3_CNhs12033_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1\ urlLabel FANTOM5 Details:\ MeningealCellsDonor1_CNhs11320_ctss_fwd MeningealCellsD1+ bigWig Meningeal Cells, donor1_CNhs11320_11493-119E8_forward 0 2543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Meningeal%20Cells%2c%20donor1.CNhs11320.11493-119E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Meningeal Cells, donor1_CNhs11320_11493-119E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11493-119E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MeningealCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MeningealCellsDonor1_CNhs11320_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8\ urlLabel FANTOM5 Details:\ MeningealCellsDonor1_CNhs11320_tpm_fwd MeningealCellsD1+ bigWig Meningeal Cells, donor1_CNhs11320_11493-119E8_forward 1 2543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Meningeal%20Cells%2c%20donor1.CNhs11320.11493-119E8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Meningeal Cells, donor1_CNhs11320_11493-119E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11493-119E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MeningealCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MeningealCellsDonor1_CNhs11320_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8\ urlLabel FANTOM5 Details:\ MeningealCellsDonor1_CNhs11320_ctss_rev MeningealCellsD1- bigWig Meningeal Cells, donor1_CNhs11320_11493-119E8_reverse 0 2544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Meningeal%20Cells%2c%20donor1.CNhs11320.11493-119E8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor1_CNhs11320_11493-119E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11493-119E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MeningealCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MeningealCellsDonor1_CNhs11320_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8\ urlLabel FANTOM5 Details:\ MeningealCellsDonor1_CNhs11320_tpm_rev MeningealCellsD1- bigWig Meningeal Cells, donor1_CNhs11320_11493-119E8_reverse 1 2544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Meningeal%20Cells%2c%20donor1.CNhs11320.11493-119E8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor1_CNhs11320_11493-119E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11493-119E8 sequence_tech=hCAGE\ 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FANTOM5 Details:\ MeningealCellsDonor2_CNhs12080_tpm_fwd MeningealCellsD2+ bigWig Meningeal Cells, donor2_CNhs12080_11573-120E7_forward 1 2545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Meningeal%20Cells%2c%20donor2.CNhs12080.11573-120E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Meningeal Cells, donor2_CNhs12080_11573-120E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11573-120E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MeningealCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MeningealCellsDonor2_CNhs12080_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7\ urlLabel FANTOM5 Details:\ MeningealCellsDonor2_CNhs12080_ctss_rev MeningealCellsD2- bigWig Meningeal Cells, donor2_CNhs12080_11573-120E7_reverse 0 2546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Meningeal%20Cells%2c%20donor2.CNhs12080.11573-120E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor2_CNhs12080_11573-120E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11573-120E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MeningealCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MeningealCellsDonor2_CNhs12080_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7\ urlLabel FANTOM5 Details:\ MeningealCellsDonor2_CNhs12080_tpm_rev MeningealCellsD2- bigWig Meningeal Cells, donor2_CNhs12080_11573-120E7_reverse 1 2546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Meningeal%20Cells%2c%20donor2.CNhs12080.11573-120E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor2_CNhs12080_11573-120E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11573-120E7 sequence_tech=hCAGE\ 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FANTOM5 Details:\ MeningealCellsDonor3_CNhs12731_tpm_fwd MeningealCellsD3+ bigWig Meningeal Cells, donor3_CNhs12731_11654-122E7_forward 1 2547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Meningeal%20Cells%2c%20donor3.CNhs12731.11654-122E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Meningeal Cells, donor3_CNhs12731_11654-122E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11654-122E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MeningealCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MeningealCellsDonor3_CNhs12731_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7\ urlLabel FANTOM5 Details:\ MeningealCellsDonor3_CNhs12731_ctss_rev MeningealCellsD3- bigWig Meningeal Cells, donor3_CNhs12731_11654-122E7_reverse 0 2548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Meningeal%20Cells%2c%20donor3.CNhs12731.11654-122E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor3_CNhs12731_11654-122E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11654-122E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MeningealCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MeningealCellsDonor3_CNhs12731_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7\ urlLabel FANTOM5 Details:\ MeningealCellsDonor3_CNhs12731_tpm_rev MeningealCellsD3- bigWig Meningeal Cells, donor3_CNhs12731_11654-122E7_reverse 1 2548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Meningeal%20Cells%2c%20donor3.CNhs12731.11654-122E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor3_CNhs12731_11654-122E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11654-122E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MeningealCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MeningealCellsDonor3_CNhs12731_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor1_CNhs10850_ctss_fwd MesothelialCellsD1+ bigWig Mesothelial Cells, donor1_CNhs10850_11247-116E5_forward 0 2549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesothelial%20Cells%2c%20donor1.CNhs10850.11247-116E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor1_CNhs10850_11247-116E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11247-116E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor1_CNhs10850_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor1_CNhs10850_tpm_fwd MesothelialCellsD1+ bigWig Mesothelial Cells, donor1_CNhs10850_11247-116E5_forward 1 2549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesothelial%20Cells%2c%20donor1.CNhs10850.11247-116E5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor1_CNhs10850_11247-116E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11247-116E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor1_CNhs10850_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor1_CNhs10850_ctss_rev MesothelialCellsD1- bigWig Mesothelial Cells, donor1_CNhs10850_11247-116E5_reverse 0 2550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesothelial%20Cells%2c%20donor1.CNhs10850.11247-116E5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor1_CNhs10850_11247-116E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11247-116E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor1_CNhs10850_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor1_CNhs10850_tpm_rev MesothelialCellsD1- bigWig Mesothelial Cells, donor1_CNhs10850_11247-116E5_reverse 1 2550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesothelial%20Cells%2c%20donor1.CNhs10850.11247-116E5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor1_CNhs10850_11247-116E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11247-116E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor1_CNhs10850_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor3_CNhs12012_ctss_fwd MesothelialCellsD3+ bigWig Mesothelial Cells, donor3_CNhs12012_11402-118D7_forward 0 2551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesothelial%20Cells%2c%20donor3.CNhs12012.11402-118D7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor3_CNhs12012_11402-118D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11402-118D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor3_CNhs12012_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor3_CNhs12012_tpm_fwd MesothelialCellsD3+ bigWig Mesothelial Cells, donor3_CNhs12012_11402-118D7_forward 1 2551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesothelial%20Cells%2c%20donor3.CNhs12012.11402-118D7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor3_CNhs12012_11402-118D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11402-118D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor3_CNhs12012_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor3_CNhs12012_ctss_rev MesothelialCellsD3- bigWig Mesothelial Cells, donor3_CNhs12012_11402-118D7_reverse 0 2552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesothelial%20Cells%2c%20donor3.CNhs12012.11402-118D7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor3_CNhs12012_11402-118D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11402-118D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor3_CNhs12012_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor3_CNhs12012_tpm_rev MesothelialCellsD3- bigWig Mesothelial Cells, donor3_CNhs12012_11402-118D7_reverse 1 2552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesothelial%20Cells%2c%20donor3.CNhs12012.11402-118D7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor3_CNhs12012_11402-118D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11402-118D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor3_CNhs12012_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor1_CNhs13535_ctss_fwd MigratoryLangerhansCellsD1+ bigWig migratory langerhans cells, donor1_CNhs13535_11901-125F2_forward 0 2553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/migratory%20langerhans%20cells%2c%20donor1.CNhs13535.11901-125F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor1_CNhs13535_11901-125F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11901-125F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor1_CNhs13535_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor1_CNhs13535_tpm_fwd MigratoryLangerhansCellsD1+ bigWig migratory langerhans cells, donor1_CNhs13535_11901-125F2_forward 1 2553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/migratory%20langerhans%20cells%2c%20donor1.CNhs13535.11901-125F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor1_CNhs13535_11901-125F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11901-125F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor1_CNhs13535_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor1_CNhs13535_ctss_rev MigratoryLangerhansCellsD1- bigWig migratory langerhans cells, donor1_CNhs13535_11901-125F2_reverse 0 2554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/migratory%20langerhans%20cells%2c%20donor1.CNhs13535.11901-125F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor1_CNhs13535_11901-125F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11901-125F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor1_CNhs13535_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor1_CNhs13535_tpm_rev MigratoryLangerhansCellsD1- bigWig migratory langerhans cells, donor1_CNhs13535_11901-125F2_reverse 1 2554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/migratory%20langerhans%20cells%2c%20donor1.CNhs13535.11901-125F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor1_CNhs13535_11901-125F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11901-125F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor1_CNhs13535_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor2_CNhs13536_ctss_fwd MigratoryLangerhansCellsD2+ bigWig migratory langerhans cells, donor2_CNhs13536_11902-125F3_forward 0 2555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/migratory%20langerhans%20cells%2c%20donor2.CNhs13536.11902-125F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor2_CNhs13536_11902-125F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11902-125F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor2_CNhs13536_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor2_CNhs13536_tpm_fwd MigratoryLangerhansCellsD2+ bigWig migratory langerhans cells, donor2_CNhs13536_11902-125F3_forward 1 2555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/migratory%20langerhans%20cells%2c%20donor2.CNhs13536.11902-125F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor2_CNhs13536_11902-125F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11902-125F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor2_CNhs13536_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor2_CNhs13536_ctss_rev MigratoryLangerhansCellsD2- bigWig migratory langerhans cells, donor2_CNhs13536_11902-125F3_reverse 0 2556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/migratory%20langerhans%20cells%2c%20donor2.CNhs13536.11902-125F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor2_CNhs13536_11902-125F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11902-125F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor2_CNhs13536_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor2_CNhs13536_tpm_rev MigratoryLangerhansCellsD2- bigWig migratory langerhans cells, donor2_CNhs13536_11902-125F3_reverse 1 2556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/migratory%20langerhans%20cells%2c%20donor2.CNhs13536.11902-125F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor2_CNhs13536_11902-125F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11902-125F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor2_CNhs13536_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor3_CNhs13547_ctss_fwd MigratoryLangerhansCellsD3+ bigWig migratory langerhans cells, donor3_CNhs13547_11903-125F4_forward 0 2557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/migratory%20langerhans%20cells%2c%20donor3.CNhs13547.11903-125F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor3_CNhs13547_11903-125F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11903-125F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor3_CNhs13547_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor3_CNhs13547_tpm_fwd MigratoryLangerhansCellsD3+ bigWig migratory langerhans cells, donor3_CNhs13547_11903-125F4_forward 1 2557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/migratory%20langerhans%20cells%2c%20donor3.CNhs13547.11903-125F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor3_CNhs13547_11903-125F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11903-125F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor3_CNhs13547_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor3_CNhs13547_ctss_rev MigratoryLangerhansCellsD3- bigWig migratory langerhans cells, donor3_CNhs13547_11903-125F4_reverse 0 2558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/migratory%20langerhans%20cells%2c%20donor3.CNhs13547.11903-125F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor3_CNhs13547_11903-125F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11903-125F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor3_CNhs13547_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor3_CNhs13547_tpm_rev MigratoryLangerhansCellsD3- bigWig migratory langerhans cells, donor3_CNhs13547_11903-125F4_reverse 1 2558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/migratory%20langerhans%20cells%2c%20donor3.CNhs13547.11903-125F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor3_CNhs13547_11903-125F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11903-125F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor3_CNhs13547_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_ctss_fwd MpcAdiposeD1+ bigWig mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_forward 0 2559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor1.CNhs12363.11747-123G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11747-123G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_tpm_fwd MpcAdiposeD1+ bigWig mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_forward 1 2559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor1.CNhs12363.11747-123G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11747-123G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_ctss_rev MpcAdiposeD1- bigWig mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_reverse 0 2560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor1.CNhs12363.11747-123G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11747-123G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_tpm_rev MpcAdiposeD1- bigWig mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_reverse 1 2560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor1.CNhs12363.11747-123G1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11747-123G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_ctss_fwd MpcAdiposeD2+ bigWig mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_forward 0 2561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor2.CNhs12364.11748-123G2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11748-123G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_tpm_fwd MpcAdiposeD2+ bigWig mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_forward 1 2561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor2.CNhs12364.11748-123G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11748-123G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_ctss_rev MpcAdiposeD2- bigWig mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_reverse 0 2562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor2.CNhs12364.11748-123G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11748-123G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_tpm_rev MpcAdiposeD2- bigWig mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_reverse 1 2562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor2.CNhs12364.11748-123G2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11748-123G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_ctss_fwd MpcAdiposeD3+ bigWig mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_forward 0 2563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor3.CNhs12365.11749-123G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11749-123G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_tpm_fwd MpcAdiposeD3+ bigWig mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_forward 1 2563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor3.CNhs12365.11749-123G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11749-123G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_ctss_rev MpcAdiposeD3- bigWig mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_reverse 0 2564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor3.CNhs12365.11749-123G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11749-123G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_tpm_rev MpcAdiposeD3- bigWig mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_reverse 1 2564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor3.CNhs12365.11749-123G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11749-123G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_ctss_fwd MpcBoneMarrowD1+ bigWig mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_forward 0 2565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor1.CNhs12366.11750-123G4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11750-123G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_tpm_fwd MpcBoneMarrowD1+ bigWig mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_forward 1 2565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor1.CNhs12366.11750-123G4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11750-123G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_ctss_rev MpcBoneMarrowD1- bigWig mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_reverse 0 2566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor1.CNhs12366.11750-123G4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11750-123G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_tpm_rev MpcBoneMarrowD1- bigWig mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_reverse 1 2566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor1.CNhs12366.11750-123G4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11750-123G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_ctss_fwd MpcBoneMarrowD2+ bigWig mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_forward 0 2567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor2.CNhs12367.11751-123G5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11751-123G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_tpm_fwd MpcBoneMarrowD2+ bigWig mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_forward 1 2567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor2.CNhs12367.11751-123G5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11751-123G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_ctss_rev MpcBoneMarrowD2- bigWig mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_reverse 0 2568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor2.CNhs12367.11751-123G5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11751-123G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_tpm_rev MpcBoneMarrowD2- bigWig mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_reverse 1 2568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor2.CNhs12367.11751-123G5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11751-123G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_ctss_fwd MpcBoneMarrowD3+ bigWig mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_forward 0 2569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor3.CNhs13098.11840-124H4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11840-124H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_tpm_fwd MpcBoneMarrowD3+ bigWig mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_forward 1 2569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor3.CNhs13098.11840-124H4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11840-124H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_ctss_rev MpcBoneMarrowD3- bigWig mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_reverse 0 2570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor3.CNhs13098.11840-124H4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11840-124H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_tpm_rev MpcBoneMarrowD3- bigWig mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_reverse 1 2570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor3.CNhs13098.11840-124H4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11840-124H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor1_CNhs12368_ctss_fwd MpcCardiacD1+ bigWig mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_forward 0 2571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor1.CNhs12368.11752-123G6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11752-123G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor1_CNhs12368_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor1_CNhs12368_tpm_fwd MpcCardiacD1+ bigWig mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_forward 1 2571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor1.CNhs12368.11752-123G6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11752-123G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor1_CNhs12368_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor1_CNhs12368_ctss_rev MpcCardiacD1- bigWig mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_reverse 0 2572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor1.CNhs12368.11752-123G6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11752-123G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor1_CNhs12368_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor1_CNhs12368_tpm_rev MpcCardiacD1- bigWig mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_reverse 1 2572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor1.CNhs12368.11752-123G6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11752-123G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor1_CNhs12368_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor2_CNhs12369_ctss_fwd MpcCardiacD2+ bigWig mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_forward 0 2573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor2.CNhs12369.11753-123G7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11753-123G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor2_CNhs12369_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor2_CNhs12369_tpm_fwd MpcCardiacD2+ bigWig mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_forward 1 2573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor2.CNhs12369.11753-123G7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11753-123G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor2_CNhs12369_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor2_CNhs12369_ctss_rev MpcCardiacD2- bigWig mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_reverse 0 2574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor2.CNhs12369.11753-123G7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11753-123G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor2_CNhs12369_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor2_CNhs12369_tpm_rev MpcCardiacD2- bigWig mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_reverse 1 2574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor2.CNhs12369.11753-123G7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11753-123G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor2_CNhs12369_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor3_CNhs12370_ctss_fwd MpcCardiacD3+ bigWig mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_forward 0 2575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor3.CNhs12370.11754-123G8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11754-123G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor3_CNhs12370_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor3_CNhs12370_tpm_fwd MpcCardiacD3+ bigWig mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_forward 1 2575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor3.CNhs12370.11754-123G8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11754-123G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor3_CNhs12370_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor3_CNhs12370_ctss_rev MpcCardiacD3- bigWig mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_reverse 0 2576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor3.CNhs12370.11754-123G8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11754-123G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor3_CNhs12370_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor3_CNhs12370_tpm_rev MpcCardiacD3- bigWig mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_reverse 1 2576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor3.CNhs12370.11754-123G8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11754-123G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor3_CNhs12370_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor4_CNhs12371_ctss_fwd MpcCardiacD4+ bigWig mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_forward 0 2577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor4.CNhs12371.11755-123G9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11755-123G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor4_CNhs12371_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor4_CNhs12371_tpm_fwd MpcCardiacD4+ bigWig mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_forward 1 2577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor4.CNhs12371.11755-123G9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11755-123G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor4_CNhs12371_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor4_CNhs12371_ctss_rev MpcCardiacD4- bigWig mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_reverse 0 2578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor4.CNhs12371.11755-123G9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11755-123G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor4_CNhs12371_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor4_CNhs12371_tpm_rev MpcCardiacD4- bigWig mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_reverse 1 2578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor4.CNhs12371.11755-123G9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11755-123G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor4_CNhs12371_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_ctss_fwd MpcOvarianCancerLeftOvaryD1+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_forward 0 2579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor1.CNhs12372.11756-123H1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11756-123H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_tpm_fwd MpcOvarianCancerLeftOvaryD1+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_forward 1 2579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor1.CNhs12372.11756-123H1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11756-123H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_ctss_rev MpcOvarianCancerLeftOvaryD1- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_reverse 0 2580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor1.CNhs12372.11756-123H1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11756-123H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_tpm_rev MpcOvarianCancerLeftOvaryD1- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_reverse 1 2580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor1.CNhs12372.11756-123H1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11756-123H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_ctss_fwd MpcOvarianCancerLeftOvaryD2+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_forward 0 2581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor2.CNhs13092.11833-124G6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11833-124G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_tpm_fwd MpcOvarianCancerLeftOvaryD2+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_forward 1 2581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor2.CNhs13092.11833-124G6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11833-124G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_ctss_rev MpcOvarianCancerLeftOvaryD2- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_reverse 0 2582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor2.CNhs13092.11833-124G6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11833-124G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_tpm_rev MpcOvarianCancerLeftOvaryD2- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_reverse 1 2582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor2.CNhs13092.11833-124G6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11833-124G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_ctss_fwd MpcOvarianCancerLeftOvaryD3+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_forward 0 2583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor3.CNhs12376.11760-123H5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11760-123H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_tpm_fwd MpcOvarianCancerLeftOvaryD3+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_forward 1 2583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor3.CNhs12376.11760-123H5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11760-123H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_ctss_rev MpcOvarianCancerLeftOvaryD3- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_reverse 0 2584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor3.CNhs12376.11760-123H5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11760-123H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_tpm_rev MpcOvarianCancerLeftOvaryD3- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_reverse 1 2584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor3.CNhs12376.11760-123H5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11760-123H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor4_CNhs13094_ctss_fwd MpcOvarianCancerLeftOvaryD4+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor4_CNhs13094_11836-124G9_forward 0 2585 255 0 0 255 127 127 0 0 0 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(SOC-57-02)_CNhs12377_11761-123H6_forward 0 2600 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02%29.CNhs12377.11761-123H6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02)_CNhs12377_11761-123H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11761-123H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702_CNhs12377_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_tpm_fwd MpcOvarianCancerRightOvaryD3+ bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_forward 1 2600 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11842-124H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02-G%29.CNhs13507.11842-124H6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11842-124H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerRightOvaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11842-124H6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_ctss_rev MpcOvarianCancerRightOvaryD3- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_reverse 0 2601 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11842-124H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02-G%29.CNhs13507.11842-124H6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11842-124H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11842-124H6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702_CNhs12377_tpm_rev 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MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702_CNhs12377_ctss_rev MpcOvarianCancerRightOvaryD3- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02)_CNhs12377_11761-123H6_reverse 0 2602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02%29.CNhs12377.11761-123H6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02)_CNhs12377_11761-123H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11761-123H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702_CNhs12377_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_tpm_rev MpcOvarianCancerRightOvaryD3- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_reverse 1 2602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11842-124H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02-G%29.CNhs13507.11842-124H6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11842-124H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerRightOvaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_tpm_rev\ type bigWig\ url 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http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_tpm_rev MpcOvarianCancerRightOvaryD4- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_reverse 1 2604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor4.CNhs13096.11837-124H1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11837-124H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerRightOvaryD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor0_CNhs10844_ctss_fwd MscAdiposeD0+ bigWig Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_forward 0 2605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20stem%20cells%20-%20adipose%2c%20donor0.CNhs10844.11217-116B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11217-116B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor0_CNhs10844_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor0_CNhs10844_tpm_fwd MscAdiposeD0+ bigWig Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_forward 1 2605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20stem%20cells%20-%20adipose%2c%20donor0.CNhs10844.11217-116B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11217-116B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor0_CNhs10844_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor0_CNhs10844_ctss_rev MscAdiposeD0- bigWig Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_reverse 0 2606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20stem%20cells%20-%20adipose%2c%20donor0.CNhs10844.11217-116B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11217-116B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor0_CNhs10844_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor0_CNhs10844_tpm_rev MscAdiposeD0- bigWig Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_reverse 1 2606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20stem%20cells%20-%20adipose%2c%20donor0.CNhs10844.11217-116B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11217-116B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor0_CNhs10844_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor1_CNhs11345_ctss_fwd MscAdiposeD1+ bigWig Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_forward 0 2607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor1.CNhs11345.11537-120A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11537-120A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor1_CNhs11345_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor1_CNhs11345_tpm_fwd MscAdiposeD1+ bigWig Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_forward 1 2607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor1.CNhs11345.11537-120A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11537-120A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor1_CNhs11345_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor1_CNhs11345_ctss_rev MscAdiposeD1- bigWig Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_reverse 0 2608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor1.CNhs11345.11537-120A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11537-120A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor1_CNhs11345_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor1_CNhs11345_tpm_rev MscAdiposeD1- bigWig Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_reverse 1 2608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor1.CNhs11345.11537-120A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11537-120A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor1_CNhs11345_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor2_CNhs12101_ctss_fwd MscAdiposeD2+ bigWig Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_forward 0 2609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor2.CNhs12101.11617-122A6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11617-122A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor2_CNhs12101_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor2_CNhs12101_tpm_fwd MscAdiposeD2+ bigWig Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_forward 1 2609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor2.CNhs12101.11617-122A6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11617-122A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor2_CNhs12101_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor2_CNhs12101_ctss_rev MscAdiposeD2- bigWig Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_reverse 0 2610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor2.CNhs12101.11617-122A6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11617-122A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor2_CNhs12101_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor2_CNhs12101_tpm_rev MscAdiposeD2- bigWig Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_reverse 1 2610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor2.CNhs12101.11617-122A6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11617-122A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor2_CNhs12101_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor3_CNhs12922_ctss_fwd MscAdiposeD3+ bigWig Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_forward 0 2611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor3.CNhs12922.11698-123A6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11698-123A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor3_CNhs12922_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor3_CNhs12922_tpm_fwd MscAdiposeD3+ bigWig Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_forward 1 2611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor3.CNhs12922.11698-123A6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11698-123A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor3_CNhs12922_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor3_CNhs12922_ctss_rev MscAdiposeD3- bigWig Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_reverse 0 2612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor3.CNhs12922.11698-123A6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11698-123A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor3_CNhs12922_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor3_CNhs12922_tpm_rev MscAdiposeD3- bigWig Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_reverse 1 2612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor3.CNhs12922.11698-123A6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11698-123A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor3_CNhs12922_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_ctss_fwd MscAmnioticMembraneD1+ bigWig Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_forward 0 2613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor1.CNhs11349.11547-120B8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11547-120B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAmnioticMembraneD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_tpm_fwd MscAmnioticMembraneD1+ bigWig Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_forward 1 2613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor1.CNhs11349.11547-120B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11547-120B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAmnioticMembraneD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_ctss_rev MscAmnioticMembraneD1- bigWig Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_reverse 0 2614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor1.CNhs11349.11547-120B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11547-120B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAmnioticMembraneD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_tpm_rev MscAmnioticMembraneD1- bigWig Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_reverse 1 2614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor1.CNhs11349.11547-120B8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11547-120B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAmnioticMembraneD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_ctss_fwd MscAmnioticMembraneD2+ bigWig Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_forward 0 2615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor2.CNhs12104.11627-122B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11627-122B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAmnioticMembraneD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_tpm_fwd MscAmnioticMembraneD2+ bigWig Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_forward 1 2615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor2.CNhs12104.11627-122B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11627-122B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAmnioticMembraneD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_ctss_rev MscAmnioticMembraneD2- bigWig Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_reverse 0 2616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor2.CNhs12104.11627-122B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11627-122B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAmnioticMembraneD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_tpm_rev MscAmnioticMembraneD2- bigWig Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_reverse 1 2616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor2.CNhs12104.11627-122B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11627-122B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAmnioticMembraneD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_ctss_fwd MscBoneMarrowD1+ bigWig Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_forward 0 2617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor1.CNhs11344.11536-120A6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11536-120A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_tpm_fwd MscBoneMarrowD1+ bigWig Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_forward 1 2617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor1.CNhs11344.11536-120A6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11536-120A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_ctss_rev MscBoneMarrowD1- bigWig Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_reverse 0 2618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor1.CNhs11344.11536-120A6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11536-120A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_tpm_rev MscBoneMarrowD1- bigWig Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_reverse 1 2618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor1.CNhs11344.11536-120A6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11536-120A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_ctss_fwd MscBoneMarrowD2+ bigWig Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_forward 0 2619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor2.CNhs12100.11616-122A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11616-122A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_tpm_fwd MscBoneMarrowD2+ bigWig Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_forward 1 2619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor2.CNhs12100.11616-122A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11616-122A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_ctss_rev MscBoneMarrowD2- bigWig Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_reverse 0 2620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor2.CNhs12100.11616-122A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11616-122A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_tpm_rev MscBoneMarrowD2- bigWig Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_reverse 1 2620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor2.CNhs12100.11616-122A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11616-122A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_ctss_fwd MscBoneMarrowD3+ bigWig Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_forward 0 2621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor3.CNhs12126.11697-123A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11697-123A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_tpm_fwd MscBoneMarrowD3+ bigWig Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_forward 1 2621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor3.CNhs12126.11697-123A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11697-123A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_ctss_rev MscBoneMarrowD3- bigWig Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_reverse 0 2622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor3.CNhs12126.11697-123A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11697-123A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_tpm_rev MscBoneMarrowD3- bigWig Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_reverse 1 2622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor3.CNhs12126.11697-123A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11697-123A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_ctss_fwd MscBoneMarrowD4+ bigWig Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_forward 0 2623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor4.CNhs11316.11464-119B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11464-119B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_tpm_fwd MscBoneMarrowD4+ bigWig Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_forward 1 2623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor4.CNhs11316.11464-119B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11464-119B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_ctss_rev MscBoneMarrowD4- bigWig Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_reverse 0 2624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor4.CNhs11316.11464-119B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11464-119B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_tpm_rev MscBoneMarrowD4- bigWig Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_reverse 1 2624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor4.CNhs11316.11464-119B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11464-119B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor0_CNhs10845_ctss_fwd MscHepaticD0+ bigWig Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_forward 0 2625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20stem%20cells%20-%20hepatic%2c%20donor0.CNhs10845.11218-116B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11218-116B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor0_CNhs10845_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor0_CNhs10845_tpm_fwd MscHepaticD0+ bigWig Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_forward 1 2625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20stem%20cells%20-%20hepatic%2c%20donor0.CNhs10845.11218-116B3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11218-116B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor0_CNhs10845_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor0_CNhs10845_ctss_rev MscHepaticD0- bigWig Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_reverse 0 2626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20stem%20cells%20-%20hepatic%2c%20donor0.CNhs10845.11218-116B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11218-116B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor0_CNhs10845_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor0_CNhs10845_tpm_rev MscHepaticD0- bigWig Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_reverse 1 2626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20stem%20cells%20-%20hepatic%2c%20donor0.CNhs10845.11218-116B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11218-116B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor0_CNhs10845_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor1_CNhs11346_ctss_fwd MscHepaticD1+ bigWig Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_forward 0 2627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor1.CNhs11346.11538-120A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11538-120A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor1_CNhs11346_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor1_CNhs11346_tpm_fwd MscHepaticD1+ bigWig Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_forward 1 2627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor1.CNhs11346.11538-120A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11538-120A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor1_CNhs11346_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor1_CNhs11346_ctss_rev MscHepaticD1- bigWig Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_reverse 0 2628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor1.CNhs11346.11538-120A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11538-120A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor1_CNhs11346_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor1_CNhs11346_tpm_rev MscHepaticD1- bigWig Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_reverse 1 2628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor1.CNhs11346.11538-120A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11538-120A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor1_CNhs11346_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor2_CNhs12730_ctss_fwd MscHepaticD2+ bigWig Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_forward 0 2629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor2.CNhs12730.11618-122A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11618-122A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor2_CNhs12730_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor2_CNhs12730_tpm_fwd MscHepaticD2+ bigWig Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_forward 1 2629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor2.CNhs12730.11618-122A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11618-122A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor2_CNhs12730_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor2_CNhs12730_ctss_rev MscHepaticD2- bigWig Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_reverse 0 2630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor2.CNhs12730.11618-122A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11618-122A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor2_CNhs12730_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor2_CNhs12730_tpm_rev MscHepaticD2- bigWig Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_reverse 1 2630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor2.CNhs12730.11618-122A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11618-122A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor2_CNhs12730_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor0_CNhs12492_ctss_fwd MscUmbilicalD0+ bigWig Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_forward 0 2631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20stem%20cells%20-%20umbilical%2c%20donor0.CNhs12492.11214-116A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11214-116A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor0_CNhs12492_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor0_CNhs12492_tpm_fwd MscUmbilicalD0+ bigWig Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_forward 1 2631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20stem%20cells%20-%20umbilical%2c%20donor0.CNhs12492.11214-116A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11214-116A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor0_CNhs12492_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor0_CNhs12492_ctss_rev MscUmbilicalD0- bigWig Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_reverse 0 2632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20stem%20cells%20-%20umbilical%2c%20donor0.CNhs12492.11214-116A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11214-116A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor0_CNhs12492_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor0_CNhs12492_tpm_rev MscUmbilicalD0- bigWig Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_reverse 1 2632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20stem%20cells%20-%20umbilical%2c%20donor0.CNhs12492.11214-116A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11214-116A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor0_CNhs12492_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor1_CNhs11347_ctss_fwd MscUmbilicalD1+ bigWig Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_forward 0 2633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor1.CNhs11347.11539-120A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11539-120A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor1_CNhs11347_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor1_CNhs11347_tpm_fwd MscUmbilicalD1+ bigWig Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_forward 1 2633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor1.CNhs11347.11539-120A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11539-120A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor1_CNhs11347_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor1_CNhs11347_ctss_rev MscUmbilicalD1- bigWig Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_reverse 0 2634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor1.CNhs11347.11539-120A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11539-120A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor1_CNhs11347_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor1_CNhs11347_tpm_rev MscUmbilicalD1- bigWig Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_reverse 1 2634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor1.CNhs11347.11539-120A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11539-120A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor1_CNhs11347_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor2_CNhs12102_ctss_fwd MscUmbilicalD2+ bigWig Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_forward 0 2635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor2.CNhs12102.11619-122A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11619-122A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor2_CNhs12102_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor2_CNhs12102_tpm_fwd MscUmbilicalD2+ bigWig Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_forward 1 2635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor2.CNhs12102.11619-122A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11619-122A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor2_CNhs12102_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor2_CNhs12102_ctss_rev MscUmbilicalD2- bigWig Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_reverse 0 2636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor2.CNhs12102.11619-122A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11619-122A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor2_CNhs12102_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor2_CNhs12102_tpm_rev MscUmbilicalD2- bigWig Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_reverse 1 2636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor2.CNhs12102.11619-122A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11619-122A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor2_CNhs12102_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor3_CNhs12127_ctss_fwd MscUmbilicalD3+ bigWig Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_forward 0 2637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor3.CNhs12127.11700-123A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11700-123A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor3_CNhs12127_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor3_CNhs12127_tpm_fwd MscUmbilicalD3+ bigWig Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_forward 1 2637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor3.CNhs12127.11700-123A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11700-123A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor3_CNhs12127_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor3_CNhs12127_ctss_rev MscUmbilicalD3- bigWig Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_reverse 0 2638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor3.CNhs12127.11700-123A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11700-123A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor3_CNhs12127_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor3_CNhs12127_tpm_rev MscUmbilicalD3- bigWig Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_reverse 1 2638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor3.CNhs12127.11700-123A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11700-123A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor3_CNhs12127_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsVertebralDonor1_CNhs10846_ctss_fwd MscVertebralD1+ bigWig Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_forward 0 2639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20Vertebral%2c%20donor1.CNhs10846.11219-116B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11219-116B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscVertebralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsVertebralDonor1_CNhs10846_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsVertebralDonor1_CNhs10846_tpm_fwd MscVertebralD1+ bigWig Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_forward 1 2639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20Vertebral%2c%20donor1.CNhs10846.11219-116B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11219-116B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscVertebralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsVertebralDonor1_CNhs10846_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsVertebralDonor1_CNhs10846_ctss_rev MscVertebralD1- bigWig Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_reverse 0 2640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20Vertebral%2c%20donor1.CNhs10846.11219-116B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11219-116B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscVertebralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsVertebralDonor1_CNhs10846_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsVertebralDonor1_CNhs10846_tpm_rev MscVertebralD1- bigWig Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_reverse 1 2640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20Vertebral%2c%20donor1.CNhs10846.11219-116B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11219-116B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscVertebralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsVertebralDonor1_CNhs10846_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_ctss_fwd MscWharton'sJellyD1+ bigWig Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_forward 0 2641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20Wharton%27s%20Jelly%2c%20donor1.CNhs11057.11548-120B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11548-120B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscWharton'sJellyD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_tpm_fwd MscWharton'sJellyD1+ bigWig Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_forward 1 2641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20Wharton%27s%20Jelly%2c%20donor1.CNhs11057.11548-120B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11548-120B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscWharton'sJellyD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_ctss_rev MscWharton'sJellyD1- bigWig Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_reverse 0 2642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20Wharton%27s%20Jelly%2c%20donor1.CNhs11057.11548-120B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11548-120B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscWharton'sJellyD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_tpm_rev MscWharton'sJellyD1- bigWig Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_reverse 1 2642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Mesenchymal%20Stem%20Cells%20-%20Wharton%27s%20Jelly%2c%20donor1.CNhs11057.11548-120B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11548-120B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscWharton'sJellyD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9\ urlLabel FANTOM5 Details:\ MyoblastDonor1_CNhs10870_ctss_fwd MyoblastD1+ bigWig Myoblast, donor1_CNhs10870_11241-116D8_forward 0 2643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%2c%20donor1.CNhs10870.11241-116D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor1_CNhs10870_11241-116D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11241-116D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor1_CNhs10870_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8\ urlLabel FANTOM5 Details:\ MyoblastDonor1_CNhs10870_tpm_fwd MyoblastD1+ bigWig Myoblast, donor1_CNhs10870_11241-116D8_forward 1 2643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%2c%20donor1.CNhs10870.11241-116D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor1_CNhs10870_11241-116D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11241-116D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor1_CNhs10870_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8\ urlLabel FANTOM5 Details:\ MyoblastDonor1_CNhs10870_ctss_rev MyoblastD1- bigWig Myoblast, donor1_CNhs10870_11241-116D8_reverse 0 2644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%2c%20donor1.CNhs10870.11241-116D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast, donor1_CNhs10870_11241-116D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11241-116D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor1_CNhs10870_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8\ urlLabel FANTOM5 Details:\ MyoblastDonor1_CNhs10870_tpm_rev MyoblastD1- bigWig Myoblast, donor1_CNhs10870_11241-116D8_reverse 1 2644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%2c%20donor1.CNhs10870.11241-116D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast, donor1_CNhs10870_11241-116D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11241-116D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor1_CNhs10870_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8\ urlLabel FANTOM5 Details:\ MyoblastDonor2_CNhs11965_ctss_fwd MyoblastD2+ bigWig Myoblast, donor2_CNhs11965_11322-117D8_forward 0 2645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%2c%20donor2.CNhs11965.11322-117D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor2_CNhs11965_11322-117D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11322-117D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor2_CNhs11965_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8\ urlLabel FANTOM5 Details:\ MyoblastDonor2_CNhs11965_tpm_fwd MyoblastD2+ bigWig Myoblast, donor2_CNhs11965_11322-117D8_forward 1 2645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%2c%20donor2.CNhs11965.11322-117D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor2_CNhs11965_11322-117D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11322-117D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor2_CNhs11965_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8\ urlLabel FANTOM5 Details:\ MyoblastDonor2_CNhs11965_ctss_rev MyoblastD2- bigWig Myoblast, donor2_CNhs11965_11322-117D8_reverse 0 2646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%2c%20donor2.CNhs11965.11322-117D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast, donor2_CNhs11965_11322-117D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11322-117D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor2_CNhs11965_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8\ urlLabel FANTOM5 Details:\ MyoblastDonor2_CNhs11965_tpm_rev MyoblastD2- bigWig Myoblast, donor2_CNhs11965_11322-117D8_reverse 1 2646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%2c%20donor2.CNhs11965.11322-117D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast, donor2_CNhs11965_11322-117D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11322-117D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor2_CNhs11965_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8\ urlLabel FANTOM5 Details:\ MyoblastDonor3_CNhs11908_ctss_fwd MyoblastD3+ bigWig Myoblast, donor3_CNhs11908_11398-118D3_forward 0 2647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%2c%20donor3.CNhs11908.11398-118D3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor3_CNhs11908_11398-118D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11398-118D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor3_CNhs11908_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3\ urlLabel FANTOM5 Details:\ MyoblastDonor3_CNhs11908_tpm_fwd MyoblastD3+ bigWig Myoblast, donor3_CNhs11908_11398-118D3_forward 1 2647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%2c%20donor3.CNhs11908.11398-118D3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor3_CNhs11908_11398-118D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11398-118D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor3_CNhs11908_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3\ urlLabel FANTOM5 Details:\ MyoblastDonor3_CNhs11908_ctss_rev MyoblastD3- bigWig Myoblast, donor3_CNhs11908_11398-118D3_reverse 0 2648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%2c%20donor3.CNhs11908.11398-118D3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast, donor3_CNhs11908_11398-118D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11398-118D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor3_CNhs11908_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3\ urlLabel FANTOM5 Details:\ MyoblastDonor3_CNhs11908_tpm_rev MyoblastD3- bigWig Myoblast, donor3_CNhs11908_11398-118D3_reverse 1 2648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%2c%20donor3.CNhs11908.11398-118D3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast, donor3_CNhs11908_11398-118D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11398-118D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor3_CNhs11908_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep1_CNhs12589_ctss_fwd NasalEpithelialCellsD1Tr1+ bigWig nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_forward 0 2649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep1.CNhs12589.12226-129F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD1Tr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor1TechRep1_CNhs12589_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep1_CNhs12589_tpm_fwd NasalEpithelialCellsD1Tr1+ bigWig nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_forward 1 2649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep1.CNhs12589.12226-129F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD1Tr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor1TechRep1_CNhs12589_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep1_CNhs12589_ctss_rev NasalEpithelialCellsD1Tr1- bigWig nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_reverse 0 2650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep1.CNhs12589.12226-129F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD1Tr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor1TechRep1_CNhs12589_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep1_CNhs12589_tpm_rev NasalEpithelialCellsD1Tr1- bigWig nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_reverse 1 2650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep1.CNhs12589.12226-129F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD1Tr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor1TechRep1_CNhs12589_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor2_CNhs12574_ctss_fwd NasalEpithelialCellsD2+ bigWig nasal epithelial cells, donor2_CNhs12574_12227-129F4_forward 0 2651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/nasal%20epithelial%20cells%2c%20donor2.CNhs12574.12227-129F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor2_CNhs12574_12227-129F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12227-129F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor2_CNhs12574_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor2_CNhs12574_tpm_fwd NasalEpithelialCellsD2+ bigWig nasal epithelial cells, donor2_CNhs12574_12227-129F4_forward 1 2651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/nasal%20epithelial%20cells%2c%20donor2.CNhs12574.12227-129F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor2_CNhs12574_12227-129F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12227-129F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor2_CNhs12574_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor2_CNhs12574_ctss_rev NasalEpithelialCellsD2- bigWig nasal epithelial cells, donor2_CNhs12574_12227-129F4_reverse 0 2652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/nasal%20epithelial%20cells%2c%20donor2.CNhs12574.12227-129F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor2_CNhs12574_12227-129F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12227-129F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor2_CNhs12574_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor2_CNhs12574_tpm_rev NasalEpithelialCellsD2- bigWig nasal epithelial cells, donor2_CNhs12574_12227-129F4_reverse 1 2652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/nasal%20epithelial%20cells%2c%20donor2.CNhs12574.12227-129F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor2_CNhs12574_12227-129F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12227-129F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor2_CNhs12574_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor1_CNhs10859_ctss_fwd NaturalKillerCellsD1+ bigWig Natural Killer Cells, donor1_CNhs10859_11230-116C6_forward 0 2653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Natural%20Killer%20Cells%2c%20donor1.CNhs10859.11230-116C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Natural Killer Cells, donor1_CNhs10859_11230-116C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11230-116C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NaturalKillerCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NaturalKillerCellsDonor1_CNhs10859_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor1_CNhs10859_tpm_fwd NaturalKillerCellsD1+ bigWig Natural Killer Cells, donor1_CNhs10859_11230-116C6_forward 1 2653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Natural%20Killer%20Cells%2c%20donor1.CNhs10859.11230-116C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Natural Killer Cells, donor1_CNhs10859_11230-116C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11230-116C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NaturalKillerCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NaturalKillerCellsDonor1_CNhs10859_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor1_CNhs10859_ctss_rev NaturalKillerCellsD1- bigWig Natural Killer Cells, donor1_CNhs10859_11230-116C6_reverse 0 2654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Natural%20Killer%20Cells%2c%20donor1.CNhs10859.11230-116C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Natural Killer Cells, donor1_CNhs10859_11230-116C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11230-116C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NaturalKillerCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NaturalKillerCellsDonor1_CNhs10859_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor1_CNhs10859_tpm_rev NaturalKillerCellsD1- bigWig Natural Killer Cells, donor1_CNhs10859_11230-116C6_reverse 1 2654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Natural%20Killer%20Cells%2c%20donor1.CNhs10859.11230-116C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Natural Killer Cells, donor1_CNhs10859_11230-116C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11230-116C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NaturalKillerCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NaturalKillerCellsDonor1_CNhs10859_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor2_CNhs11957_ctss_fwd NaturalKillerCellsD2+ bigWig Natural Killer Cells, donor2_CNhs11957_11311-117C6_forward 0 2655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Natural%20Killer%20Cells%2c%20donor2.CNhs11957.11311-117C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Natural Killer Cells, donor2_CNhs11957_11311-117C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11311-117C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NaturalKillerCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NaturalKillerCellsDonor2_CNhs11957_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor2_CNhs11957_tpm_fwd NaturalKillerCellsD2+ bigWig Natural Killer Cells, donor2_CNhs11957_11311-117C6_forward 1 2655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Natural%20Killer%20Cells%2c%20donor2.CNhs11957.11311-117C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Natural Killer Cells, donor2_CNhs11957_11311-117C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11311-117C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NaturalKillerCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NaturalKillerCellsDonor2_CNhs11957_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor2_CNhs11957_ctss_rev NaturalKillerCellsD2- bigWig Natural Killer Cells, donor2_CNhs11957_11311-117C6_reverse 0 2656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Natural%20Killer%20Cells%2c%20donor2.CNhs11957.11311-117C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Natural Killer Cells, donor2_CNhs11957_11311-117C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11311-117C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NaturalKillerCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NaturalKillerCellsDonor2_CNhs11957_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor2_CNhs11957_tpm_rev NaturalKillerCellsD2- bigWig Natural Killer Cells, donor2_CNhs11957_11311-117C6_reverse 1 2656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Natural%20Killer%20Cells%2c%20donor2.CNhs11957.11311-117C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Natural Killer Cells, donor2_CNhs11957_11311-117C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11311-117C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NaturalKillerCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NaturalKillerCellsDonor2_CNhs11957_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor3_CNhs12001_ctss_fwd NaturalKillerCellsD3+ bigWig Natural Killer Cells, donor3_CNhs12001_11387-118C1_forward 0 2657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Natural%20Killer%20Cells%2c%20donor3.CNhs12001.11387-118C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Natural Killer Cells, donor3_CNhs12001_11387-118C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11387-118C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NaturalKillerCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NaturalKillerCellsDonor3_CNhs12001_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor3_CNhs12001_tpm_fwd NaturalKillerCellsD3+ bigWig Natural Killer Cells, donor3_CNhs12001_11387-118C1_forward 1 2657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Natural%20Killer%20Cells%2c%20donor3.CNhs12001.11387-118C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Natural Killer Cells, donor3_CNhs12001_11387-118C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11387-118C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NaturalKillerCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NaturalKillerCellsDonor3_CNhs12001_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor3_CNhs12001_ctss_rev NaturalKillerCellsD3- bigWig Natural Killer Cells, donor3_CNhs12001_11387-118C1_reverse 0 2658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Natural%20Killer%20Cells%2c%20donor3.CNhs12001.11387-118C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Natural Killer Cells, donor3_CNhs12001_11387-118C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11387-118C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NaturalKillerCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NaturalKillerCellsDonor3_CNhs12001_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor3_CNhs12001_tpm_rev NaturalKillerCellsD3- bigWig Natural Killer Cells, donor3_CNhs12001_11387-118C1_reverse 1 2658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Natural%20Killer%20Cells%2c%20donor3.CNhs12001.11387-118C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Natural Killer Cells, donor3_CNhs12001_11387-118C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11387-118C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NaturalKillerCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NaturalKillerCellsDonor3_CNhs12001_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1\ urlLabel FANTOM5 Details:\ NeuralStemCellsDonor1_CNhs11063_ctss_fwd NeuralStemCellsD1+ bigWig Neural stem cells, donor1_CNhs11063_11275-116H6_forward 0 2659 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Neural%20stem%20cells%2c%20donor1.CNhs11063.11275-116H6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Neural stem cells, donor1_CNhs11063_11275-116H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11275-116H6 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http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6\ urlLabel FANTOM5 Details:\ NeuralStemCellsDonor1_CNhs11063_ctss_rev NeuralStemCellsD1- bigWig Neural stem cells, donor1_CNhs11063_11275-116H6_reverse 0 2660 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Neural%20stem%20cells%2c%20donor1.CNhs11063.11275-116H6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Neural stem cells, donor1_CNhs11063_11275-116H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11275-116H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeuralStemCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuralStemCellsDonor1_CNhs11063_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6\ urlLabel FANTOM5 Details:\ NeuralStemCellsDonor1_CNhs11063_tpm_rev NeuralStemCellsD1- bigWig Neural stem cells, donor1_CNhs11063_11275-116H6_reverse 1 2660 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Neural%20stem%20cells%2c%20donor1.CNhs11063.11275-116H6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Neural stem cells, donor1_CNhs11063_11275-116H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11275-116H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeuralStemCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuralStemCellsDonor1_CNhs11063_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6\ urlLabel FANTOM5 Details:\ NeuralStemCellsDonor2_CNhs11384_ctss_fwd NeuralStemCellsD2+ bigWig Neural stem cells, donor2_CNhs11384_11352-117H2_forward 0 2661 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11352-117H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Neural%20stem%20cells%2c%20donor2.CNhs11384.11352-117H2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Neural stem cells, donor2_CNhs11384_11352-117H2_forward\ 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NeuralStemCellsDonor2_CNhs11384_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11352-117H2\ urlLabel FANTOM5 Details:\ NeuralStemCellsDonor2_CNhs11384_ctss_rev NeuralStemCellsD2- bigWig Neural stem cells, donor2_CNhs11384_11352-117H2_reverse 0 2662 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11352-117H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Neural%20stem%20cells%2c%20donor2.CNhs11384.11352-117H2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Neural stem cells, donor2_CNhs11384_11352-117H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11352-117H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeuralStemCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuralStemCellsDonor2_CNhs11384_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11352-117H2\ urlLabel FANTOM5 Details:\ NeuralStemCellsDonor2_CNhs11384_tpm_rev NeuralStemCellsD2- bigWig Neural stem cells, 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urlLabel FANTOM5 Details:\ NeutrophilsDonor1_CNhs10862_ctss_fwd NeutrophilsD1+ bigWig Neutrophils, donor1_CNhs10862_11233-116C9_forward 0 2669 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11233-116C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Neutrophils%2c%20donor1.CNhs10862.11233-116C9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Neutrophils, donor1_CNhs10862_11233-116C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11233-116C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeutrophilsDonor1_CNhs10862_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11233-116C9\ urlLabel FANTOM5 Details:\ NeutrophilsDonor1_CNhs10862_tpm_fwd NeutrophilsD1+ bigWig Neutrophils, donor1_CNhs10862_11233-116C9_forward 1 2669 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11233-116C9 regulation 0 bigDataUrl 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Neutrophils, donor2_CNhs11959_11314-117C9_forward 0 2671 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11314-117C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Neutrophils%2c%20donor2.CNhs11959.11314-117C9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Neutrophils, donor2_CNhs11959_11314-117C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11314-117C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeutrophilsDonor2_CNhs11959_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11314-117C9\ urlLabel FANTOM5 Details:\ NeutrophilsDonor2_CNhs11959_tpm_fwd NeutrophilsD2+ bigWig Neutrophils, donor2_CNhs11959_11314-117C9_forward 1 2671 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11314-117C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Neutrophils%2c%20donor2.CNhs11959.11314-117C9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Neutrophils, 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NeutrophilsDonor2_CNhs11959_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11314-117C9\ urlLabel FANTOM5 Details:\ NeutrophilsDonor2_CNhs11959_tpm_rev NeutrophilsD2- bigWig Neutrophils, donor2_CNhs11959_11314-117C9_reverse 1 2672 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11314-117C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Neutrophils%2c%20donor2.CNhs11959.11314-117C9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Neutrophils, donor2_CNhs11959_11314-117C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11314-117C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeutrophilsDonor2_CNhs11959_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11314-117C9\ urlLabel FANTOM5 Details:\ NeutrophilsDonor3_CNhs11905_ctss_fwd NeutrophilsD3+ bigWig Neutrophils, donor3_CNhs11905_11390-118C4_forward 0 2673 255 0 0 255 127 127 0 0 0 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urlLabel FANTOM5 Details:\ NeutrophilsDonor3_CNhs11905_tpm_rev NeutrophilsD3- bigWig Neutrophils, donor3_CNhs11905_11390-118C4_reverse 1 2674 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11390-118C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Neutrophils%2c%20donor3.CNhs11905.11390-118C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Neutrophils, donor3_CNhs11905_11390-118C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11390-118C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeutrophilsDonor3_CNhs11905_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11390-118C4\ urlLabel FANTOM5 Details:\ NucleusPulposusCellDonor1_CNhs10881_ctss_fwd NucleusPulposusCellD1+ bigWig Nucleus Pulposus Cell, donor1_CNhs10881_11252-116F1_forward 0 2675 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11252-116F1 regulation 0 bigDataUrl 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metadata ontology_id=11252-116F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusPulposusCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NucleusPulposusCellDonor1_CNhs10881_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11252-116F1\ urlLabel FANTOM5 Details:\ NucleusPulposusCellDonor1_CNhs10881_ctss_rev NucleusPulposusCellD1- bigWig Nucleus Pulposus Cell, donor1_CNhs10881_11252-116F1_reverse 0 2676 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11252-116F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor1.CNhs10881.11252-116F1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Nucleus Pulposus Cell, donor1_CNhs10881_11252-116F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11252-116F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusPulposusCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NucleusPulposusCellDonor1_CNhs10881_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11252-116F1\ urlLabel FANTOM5 Details:\ NucleusPulposusCellDonor1_CNhs10881_tpm_rev NucleusPulposusCellD1- bigWig Nucleus Pulposus Cell, donor1_CNhs10881_11252-116F1_reverse 1 2676 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11252-116F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor1.CNhs10881.11252-116F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Nucleus Pulposus Cell, donor1_CNhs10881_11252-116F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11252-116F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusPulposusCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NucleusPulposusCellDonor1_CNhs10881_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11252-116F1\ urlLabel FANTOM5 Details:\ NucleusPulposusCellDonor2_CNhs12019_ctss_fwd NucleusPulposusCellD2+ bigWig Nucleus Pulposus Cell, donor2_CNhs12019_11409-118E5_forward 0 2677 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11409-118E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor2.CNhs12019.11409-118E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Nucleus Pulposus Cell, donor2_CNhs12019_11409-118E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11409-118E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusPulposusCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NucleusPulposusCellDonor2_CNhs12019_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11409-118E5\ urlLabel FANTOM5 Details:\ NucleusPulposusCellDonor2_CNhs12019_tpm_fwd NucleusPulposusCellD2+ bigWig Nucleus Pulposus Cell, donor2_CNhs12019_11409-118E5_forward 1 2677 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11409-118E5 regulation 0 bigDataUrl 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ontology_id=11409-118E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusPulposusCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NucleusPulposusCellDonor2_CNhs12019_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11409-118E5\ urlLabel FANTOM5 Details:\ NucleusPulposusCellDonor2_CNhs12019_tpm_rev NucleusPulposusCellD2- bigWig Nucleus Pulposus Cell, donor2_CNhs12019_11409-118E5_reverse 1 2678 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11409-118E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor2.CNhs12019.11409-118E5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Nucleus Pulposus Cell, donor2_CNhs12019_11409-118E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11409-118E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusPulposusCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NucleusPulposusCellDonor2_CNhs12019_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11409-118E5\ urlLabel FANTOM5 Details:\ NucleusPulposusCellDonor3_CNhs12063_ctss_fwd NucleusPulposusCellD3+ bigWig Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_forward 0 2679 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor3.CNhs12063.11462-119B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11462-119B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusPulposusCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NucleusPulposusCellDonor3_CNhs12063_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4\ urlLabel FANTOM5 Details:\ NucleusPulposusCellDonor3_CNhs12063_tpm_fwd NucleusPulposusCellD3+ bigWig Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_forward 1 2679 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor3.CNhs12063.11462-119B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11462-119B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusPulposusCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NucleusPulposusCellDonor3_CNhs12063_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4\ urlLabel FANTOM5 Details:\ NucleusPulposusCellDonor3_CNhs12063_ctss_rev NucleusPulposusCellD3- bigWig Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_reverse 0 2680 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor3.CNhs12063.11462-119B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11462-119B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusPulposusCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NucleusPulposusCellDonor3_CNhs12063_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4\ urlLabel FANTOM5 Details:\ NucleusPulposusCellDonor3_CNhs12063_tpm_rev NucleusPulposusCellD3- bigWig Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_reverse 1 2680 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor3.CNhs12063.11462-119B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11462-119B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusPulposusCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NucleusPulposusCellDonor3_CNhs12063_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor1_CNhs13816_ctss_fwd OlfactoryEpithelialCellsD1+ bigWig Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_forward 0 2681 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Olfactory%20epithelial%20cells%2c%20donor1.CNhs13816.11933-125I7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11933-125I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor1_CNhs13816_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor1_CNhs13816_tpm_fwd OlfactoryEpithelialCellsD1+ bigWig Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_forward 1 2681 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Olfactory%20epithelial%20cells%2c%20donor1.CNhs13816.11933-125I7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11933-125I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor1_CNhs13816_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor1_CNhs13816_ctss_rev OlfactoryEpithelialCellsD1- bigWig Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_reverse 0 2682 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Olfactory%20epithelial%20cells%2c%20donor1.CNhs13816.11933-125I7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11933-125I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor1_CNhs13816_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor1_CNhs13816_tpm_rev OlfactoryEpithelialCellsD1- bigWig Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_reverse 1 2682 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Olfactory%20epithelial%20cells%2c%20donor1.CNhs13816.11933-125I7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11933-125I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor1_CNhs13816_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor2_CNhs13817_ctss_fwd OlfactoryEpithelialCellsD2+ bigWig Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_forward 0 2683 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Olfactory%20epithelial%20cells%2c%20donor2.CNhs13817.11934-125I8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11934-125I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor2_CNhs13817_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor2_CNhs13817_tpm_fwd OlfactoryEpithelialCellsD2+ bigWig Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_forward 1 2683 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Olfactory%20epithelial%20cells%2c%20donor2.CNhs13817.11934-125I8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11934-125I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor2_CNhs13817_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor2_CNhs13817_ctss_rev OlfactoryEpithelialCellsD2- bigWig Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_reverse 0 2684 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Olfactory%20epithelial%20cells%2c%20donor2.CNhs13817.11934-125I8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11934-125I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor2_CNhs13817_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor2_CNhs13817_tpm_rev OlfactoryEpithelialCellsD2- bigWig Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_reverse 1 2684 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Olfactory%20epithelial%20cells%2c%20donor2.CNhs13817.11934-125I8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11934-125I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor2_CNhs13817_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor3_CNhs13818_ctss_fwd OlfactoryEpithelialCellsD3+ bigWig Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_forward 0 2685 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Olfactory%20epithelial%20cells%2c%20donor3.CNhs13818.11935-125I9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11935-125I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor3_CNhs13818_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor3_CNhs13818_tpm_fwd OlfactoryEpithelialCellsD3+ bigWig Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_forward 1 2685 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Olfactory%20epithelial%20cells%2c%20donor3.CNhs13818.11935-125I9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11935-125I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor3_CNhs13818_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor3_CNhs13818_ctss_rev OlfactoryEpithelialCellsD3- bigWig Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_reverse 0 2686 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Olfactory%20epithelial%20cells%2c%20donor3.CNhs13818.11935-125I9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11935-125I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor3_CNhs13818_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor3_CNhs13818_tpm_rev OlfactoryEpithelialCellsD3- bigWig Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_reverse 1 2686 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Olfactory%20epithelial%20cells%2c%20donor3.CNhs13818.11935-125I9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11935-125I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor3_CNhs13818_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor4_CNhs13819_ctss_fwd OlfactoryEpithelialCellsD4+ bigWig Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_forward 0 2687 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Olfactory%20epithelial%20cells%2c%20donor4.CNhs13819.11936-126A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11936-126A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor4_CNhs13819_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor4_CNhs13819_tpm_fwd OlfactoryEpithelialCellsD4+ bigWig Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_forward 1 2687 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Olfactory%20epithelial%20cells%2c%20donor4.CNhs13819.11936-126A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11936-126A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor4_CNhs13819_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor4_CNhs13819_ctss_rev OlfactoryEpithelialCellsD4- bigWig Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_reverse 0 2688 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Olfactory%20epithelial%20cells%2c%20donor4.CNhs13819.11936-126A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11936-126A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor4_CNhs13819_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor4_CNhs13819_tpm_rev OlfactoryEpithelialCellsD4- bigWig Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_reverse 1 2688 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Olfactory%20epithelial%20cells%2c%20donor4.CNhs13819.11936-126A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11936-126A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor4_CNhs13819_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1\ urlLabel FANTOM5 Details:\ OligodendrocytePrecursorsDonor1_CNhs12586_ctss_fwd OligodendrocytePrecursorsD1+ bigWig Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_forward 0 2689 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Oligodendrocyte%20-%20precursors%2c%20donor1.CNhs12586.11496-119F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11496-119F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OligodendrocytePrecursorsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OligodendrocytePrecursorsDonor1_CNhs12586_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2\ urlLabel FANTOM5 Details:\ OligodendrocytePrecursorsDonor1_CNhs12586_tpm_fwd OligodendrocytePrecursorsD1+ bigWig Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_forward 1 2689 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Oligodendrocyte%20-%20precursors%2c%20donor1.CNhs12586.11496-119F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11496-119F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OligodendrocytePrecursorsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OligodendrocytePrecursorsDonor1_CNhs12586_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2\ urlLabel FANTOM5 Details:\ OligodendrocytePrecursorsDonor1_CNhs12586_ctss_rev OligodendrocytePrecursorsD1- bigWig Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_reverse 0 2690 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Oligodendrocyte%20-%20precursors%2c%20donor1.CNhs12586.11496-119F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11496-119F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OligodendrocytePrecursorsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OligodendrocytePrecursorsDonor1_CNhs12586_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2\ urlLabel FANTOM5 Details:\ OligodendrocytePrecursorsDonor1_CNhs12586_tpm_rev OligodendrocytePrecursorsD1- bigWig Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_reverse 1 2690 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Oligodendrocyte%20-%20precursors%2c%20donor1.CNhs12586.11496-119F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11496-119F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OligodendrocytePrecursorsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OligodendrocytePrecursorsDonor1_CNhs12586_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2\ urlLabel FANTOM5 Details:\ OsteoblastDonor1_CNhs11078_ctss_fwd OsteoblastD1+ bigWig Osteoblast, donor1_CNhs11078_11277-116H8_forward 0 2691 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%2c%20donor1.CNhs11078.11277-116H8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor1_CNhs11078_11277-116H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11277-116H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor1_CNhs11078_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8\ urlLabel FANTOM5 Details:\ OsteoblastDonor1_CNhs11078_tpm_fwd OsteoblastD1+ bigWig Osteoblast, donor1_CNhs11078_11277-116H8_forward 1 2691 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%2c%20donor1.CNhs11078.11277-116H8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor1_CNhs11078_11277-116H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11277-116H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor1_CNhs11078_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8\ urlLabel FANTOM5 Details:\ OsteoblastDonor1_CNhs11078_ctss_rev OsteoblastD1- bigWig Osteoblast, donor1_CNhs11078_11277-116H8_reverse 0 2692 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%2c%20donor1.CNhs11078.11277-116H8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor1_CNhs11078_11277-116H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11277-116H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor1_CNhs11078_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8\ urlLabel FANTOM5 Details:\ OsteoblastDonor1_CNhs11078_tpm_rev OsteoblastD1- bigWig Osteoblast, donor1_CNhs11078_11277-116H8_reverse 1 2692 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%2c%20donor1.CNhs11078.11277-116H8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor1_CNhs11078_11277-116H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11277-116H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor1_CNhs11078_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8\ urlLabel FANTOM5 Details:\ OsteoblastDonor2_CNhs11385_ctss_fwd OsteoblastD2+ bigWig Osteoblast, donor2_CNhs11385_11354-117H4_forward 0 2693 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%2c%20donor2.CNhs11385.11354-117H4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor2_CNhs11385_11354-117H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11354-117H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor2_CNhs11385_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4\ urlLabel FANTOM5 Details:\ OsteoblastDonor2_CNhs11385_tpm_fwd OsteoblastD2+ bigWig Osteoblast, donor2_CNhs11385_11354-117H4_forward 1 2693 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%2c%20donor2.CNhs11385.11354-117H4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor2_CNhs11385_11354-117H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11354-117H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor2_CNhs11385_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4\ urlLabel FANTOM5 Details:\ OsteoblastDonor2_CNhs11385_ctss_rev OsteoblastD2- bigWig Osteoblast, donor2_CNhs11385_11354-117H4_reverse 0 2694 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%2c%20donor2.CNhs11385.11354-117H4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor2_CNhs11385_11354-117H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11354-117H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor2_CNhs11385_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4\ urlLabel FANTOM5 Details:\ OsteoblastDonor2_CNhs11385_tpm_rev OsteoblastD2- bigWig Osteoblast, donor2_CNhs11385_11354-117H4_reverse 1 2694 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%2c%20donor2.CNhs11385.11354-117H4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor2_CNhs11385_11354-117H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11354-117H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor2_CNhs11385_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4\ urlLabel FANTOM5 Details:\ OsteoblastDonor3_CNhs12036_ctss_fwd OsteoblastD3+ bigWig Osteoblast, donor3_CNhs12036_11426-118G4_forward 0 2695 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%2c%20donor3.CNhs12036.11426-118G4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor3_CNhs12036_11426-118G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11426-118G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor3_CNhs12036_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4\ urlLabel FANTOM5 Details:\ OsteoblastDonor3_CNhs12036_tpm_fwd OsteoblastD3+ bigWig Osteoblast, donor3_CNhs12036_11426-118G4_forward 1 2695 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%2c%20donor3.CNhs12036.11426-118G4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor3_CNhs12036_11426-118G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11426-118G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor3_CNhs12036_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4\ urlLabel FANTOM5 Details:\ OsteoblastDonor3_CNhs12036_ctss_rev OsteoblastD3- bigWig Osteoblast, donor3_CNhs12036_11426-118G4_reverse 0 2696 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%2c%20donor3.CNhs12036.11426-118G4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor3_CNhs12036_11426-118G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11426-118G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor3_CNhs12036_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4\ urlLabel FANTOM5 Details:\ OsteoblastDonor3_CNhs12036_tpm_rev OsteoblastD3- bigWig Osteoblast, donor3_CNhs12036_11426-118G4_reverse 1 2696 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%2c%20donor3.CNhs12036.11426-118G4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor3_CNhs12036_11426-118G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11426-118G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor3_CNhs12036_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor1_CNhs11311_ctss_fwd OsteoblastDifferentiatedD1+ bigWig Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_forward 0 2697 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%20-%20differentiated%2c%20donor1.CNhs11311.11276-116H7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11276-116H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastDifferentiatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDifferentiatedDonor1_CNhs11311_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor1_CNhs11311_tpm_fwd OsteoblastDifferentiatedD1+ bigWig Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_forward 1 2697 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%20-%20differentiated%2c%20donor1.CNhs11311.11276-116H7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11276-116H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastDifferentiatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDifferentiatedDonor1_CNhs11311_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor1_CNhs11311_ctss_rev OsteoblastDifferentiatedD1- bigWig Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_reverse 0 2698 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%20-%20differentiated%2c%20donor1.CNhs11311.11276-116H7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11276-116H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastDifferentiatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDifferentiatedDonor1_CNhs11311_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor1_CNhs11311_tpm_rev OsteoblastDifferentiatedD1- bigWig Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_reverse 1 2698 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%20-%20differentiated%2c%20donor1.CNhs11311.11276-116H7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11276-116H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastDifferentiatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDifferentiatedDonor1_CNhs11311_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor2_CNhs11980_ctss_fwd OsteoblastDifferentiatedD2+ bigWig Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_forward 0 2699 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%20-%20differentiated%2c%20donor2.CNhs11980.11353-117H3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11353-117H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastDifferentiatedD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDifferentiatedDonor2_CNhs11980_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor2_CNhs11980_tpm_fwd OsteoblastDifferentiatedD2+ bigWig Osteoblast 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/gbdb/hg19/fantom5/Osteoblast%20-%20differentiated%2c%20donor2.CNhs11980.11353-117H3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11353-117H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastDifferentiatedD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDifferentiatedDonor2_CNhs11980_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor2_CNhs11980_tpm_rev OsteoblastDifferentiatedD2- bigWig Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_reverse 1 2700 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%20-%20differentiated%2c%20donor2.CNhs11980.11353-117H3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11353-117H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastDifferentiatedD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDifferentiatedDonor2_CNhs11980_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor3_CNhs12035_ctss_fwd OsteoblastDifferentiatedD3+ bigWig Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_forward 0 2701 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%20-%20differentiated%2c%20donor3.CNhs12035.11425-118G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11425-118G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel 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http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor3_CNhs12035_ctss_rev OsteoblastDifferentiatedD3- bigWig Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_reverse 0 2702 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Osteoblast%20-%20differentiated%2c%20donor3.CNhs12035.11425-118G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11425-118G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastDifferentiatedD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDifferentiatedDonor3_CNhs12035_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor3_CNhs12035_tpm_rev OsteoblastDifferentiatedD3- bigWig Osteoblast 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maxHeightPixels 100:8:8\ metadata ontology_id=11249-116E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PancreaticStromalCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PancreaticStromalCellsDonor1_CNhs10877_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7\ urlLabel FANTOM5 Details:\ PancreaticStromalCellsDonor1_CNhs10877_ctss_rev PancreaticStromalCellsD1- bigWig Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_reverse 0 2704 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Pancreatic%20stromal%20cells%2c%20donor1.CNhs10877.11249-116E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11249-116E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PancreaticStromalCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PancreaticStromalCellsDonor1_CNhs10877_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7\ urlLabel FANTOM5 Details:\ PancreaticStromalCellsDonor1_CNhs10877_tpm_rev PancreaticStromalCellsD1- bigWig Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_reverse 1 2704 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Pancreatic%20stromal%20cells%2c%20donor1.CNhs10877.11249-116E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11249-116E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PancreaticStromalCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PancreaticStromalCellsDonor1_CNhs10877_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7\ urlLabel FANTOM5 Details:\ PericytesDonor1_CNhs11317_ctss_fwd PericytesD1+ bigWig Pericytes, donor1_CNhs11317_11491-119E6_forward 0 2705 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11491-119E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Pericytes%2c%20donor1.CNhs11317.11491-119E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Pericytes, donor1_CNhs11317_11491-119E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11491-119E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PericytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PericytesDonor1_CNhs11317_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11491-119E6\ urlLabel FANTOM5 Details:\ PericytesDonor1_CNhs11317_tpm_fwd PericytesD1+ bigWig Pericytes, donor1_CNhs11317_11491-119E6_forward 1 2705 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11491-119E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Pericytes%2c%20donor1.CNhs11317.11491-119E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Pericytes, donor1_CNhs11317_11491-119E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11491-119E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PericytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PericytesDonor1_CNhs11317_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11491-119E6\ urlLabel FANTOM5 Details:\ PericytesDonor1_CNhs11317_ctss_rev PericytesD1- bigWig Pericytes, donor1_CNhs11317_11491-119E6_reverse 0 2706 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11491-119E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Pericytes%2c%20donor1.CNhs11317.11491-119E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Pericytes, donor1_CNhs11317_11491-119E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11491-119E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PericytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PericytesDonor1_CNhs11317_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11491-119E6\ urlLabel FANTOM5 Details:\ PericytesDonor1_CNhs11317_tpm_rev PericytesD1- bigWig Pericytes, donor1_CNhs11317_11491-119E6_reverse 1 2706 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11491-119E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Pericytes%2c%20donor1.CNhs11317.11491-119E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Pericytes, donor1_CNhs11317_11491-119E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11491-119E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PericytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PericytesDonor1_CNhs11317_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11491-119E6\ urlLabel FANTOM5 Details:\ PericytesDonor2_CNhs12079_ctss_fwd PericytesD2+ bigWig Pericytes, donor2_CNhs12079_11571-120E5_forward 0 2707 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11571-120E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Pericytes%2c%20donor2.CNhs12079.11571-120E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Pericytes, donor2_CNhs12079_11571-120E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11571-120E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PericytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PericytesDonor2_CNhs12079_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11571-120E5\ urlLabel FANTOM5 Details:\ PericytesDonor2_CNhs12079_tpm_fwd PericytesD2+ bigWig Pericytes, donor2_CNhs12079_11571-120E5_forward 1 2707 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11571-120E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Pericytes%2c%20donor2.CNhs12079.11571-120E5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Pericytes, donor2_CNhs12079_11571-120E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11571-120E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PericytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PericytesDonor2_CNhs12079_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11571-120E5\ urlLabel FANTOM5 Details:\ PericytesDonor2_CNhs12079_ctss_rev PericytesD2- bigWig Pericytes, donor2_CNhs12079_11571-120E5_reverse 0 2708 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11571-120E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Pericytes%2c%20donor2.CNhs12079.11571-120E5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Pericytes, donor2_CNhs12079_11571-120E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11571-120E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PericytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PericytesDonor2_CNhs12079_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11571-120E5\ urlLabel FANTOM5 Details:\ PericytesDonor2_CNhs12079_tpm_rev PericytesD2- bigWig Pericytes, donor2_CNhs12079_11571-120E5_reverse 1 2708 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11571-120E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Pericytes%2c%20donor2.CNhs12079.11571-120E5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Pericytes, donor2_CNhs12079_11571-120E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11571-120E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PericytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PericytesDonor2_CNhs12079_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11571-120E5\ urlLabel FANTOM5 Details:\ PericytesDonor3_CNhs12116_ctss_fwd PericytesD3+ bigWig Pericytes, donor3_CNhs12116_11652-122E5_forward 0 2709 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11652-122E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Pericytes%2c%20donor3.CNhs12116.11652-122E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Pericytes, donor3_CNhs12116_11652-122E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11652-122E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PericytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PericytesDonor3_CNhs12116_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11652-122E5\ urlLabel FANTOM5 Details:\ PericytesDonor3_CNhs12116_tpm_fwd PericytesD3+ bigWig Pericytes, donor3_CNhs12116_11652-122E5_forward 1 2709 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11652-122E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Pericytes%2c%20donor3.CNhs12116.11652-122E5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Pericytes, donor3_CNhs12116_11652-122E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11652-122E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PericytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track 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strand=forward\ track PlacentalEpithelialCellsDonor1_CNhs11079_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor1_CNhs11079_tpm_fwd PlacentalEpithelialCellsD1+ bigWig Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_forward 1 2721 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Placental%20Epithelial%20Cells%2c%20donor1.CNhs11079.11278-116H9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11278-116H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PlacentalEpithelialCellsDonor1_CNhs11079_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor1_CNhs11079_ctss_rev PlacentalEpithelialCellsD1- bigWig Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_reverse 0 2722 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Placental%20Epithelial%20Cells%2c%20donor1.CNhs11079.11278-116H9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11278-116H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor1_CNhs11079_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor1_CNhs11079_tpm_rev PlacentalEpithelialCellsD1- bigWig Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_reverse 1 2722 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Placental%20Epithelial%20Cells%2c%20donor1.CNhs11079.11278-116H9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11278-116H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor1_CNhs11079_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor2_CNhs11386_ctss_fwd PlacentalEpithelialCellsD2+ bigWig Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_forward 0 2723 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Placental%20Epithelial%20Cells%2c%20donor2.CNhs11386.11355-117H5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11355-117H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PlacentalEpithelialCellsDonor2_CNhs11386_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor2_CNhs11386_tpm_fwd PlacentalEpithelialCellsD2+ bigWig Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_forward 1 2723 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Placental%20Epithelial%20Cells%2c%20donor2.CNhs11386.11355-117H5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11355-117H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PlacentalEpithelialCellsDonor2_CNhs11386_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor2_CNhs11386_ctss_rev PlacentalEpithelialCellsD2- bigWig Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_reverse 0 2724 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Placental%20Epithelial%20Cells%2c%20donor2.CNhs11386.11355-117H5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11355-117H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor2_CNhs11386_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor2_CNhs11386_tpm_rev PlacentalEpithelialCellsD2- bigWig Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_reverse 1 2724 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Placental%20Epithelial%20Cells%2c%20donor2.CNhs11386.11355-117H5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11355-117H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor2_CNhs11386_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor3_CNhs12037_ctss_fwd PlacentalEpithelialCellsD3+ bigWig Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_forward 0 2725 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Placental%20Epithelial%20Cells%2c%20donor3.CNhs12037.11427-118G5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11427-118G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentalEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PlacentalEpithelialCellsDonor3_CNhs12037_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor3_CNhs12037_tpm_fwd PlacentalEpithelialCellsD3+ bigWig Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_forward 1 2725 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Placental%20Epithelial%20Cells%2c%20donor3.CNhs12037.11427-118G5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11427-118G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentalEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PlacentalEpithelialCellsDonor3_CNhs12037_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor3_CNhs12037_ctss_rev PlacentalEpithelialCellsD3- bigWig Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_reverse 0 2726 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Placental%20Epithelial%20Cells%2c%20donor3.CNhs12037.11427-118G5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11427-118G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentalEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor3_CNhs12037_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor3_CNhs12037_tpm_rev PlacentalEpithelialCellsD3- bigWig Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_reverse 1 2726 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Placental%20Epithelial%20Cells%2c%20donor3.CNhs12037.11427-118G5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11427-118G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentalEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor3_CNhs12037_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor1_CNhs11052_ctss_fwd PreadipocyteBreastD1+ bigWig Preadipocyte - breast, donor1_CNhs11052_11467-119B9_forward 0 2727 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20breast%2c%20donor1.CNhs11052.11467-119B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - breast, donor1_CNhs11052_11467-119B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11467-119B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteBreastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteBreastDonor1_CNhs11052_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor1_CNhs11052_tpm_fwd PreadipocyteBreastD1+ bigWig Preadipocyte - breast, donor1_CNhs11052_11467-119B9_forward 1 2727 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20breast%2c%20donor1.CNhs11052.11467-119B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - breast, donor1_CNhs11052_11467-119B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11467-119B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteBreastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteBreastDonor1_CNhs11052_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor1_CNhs11052_ctss_rev PreadipocyteBreastD1- bigWig Preadipocyte - breast, donor1_CNhs11052_11467-119B9_reverse 0 2728 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20breast%2c%20donor1.CNhs11052.11467-119B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - breast, donor1_CNhs11052_11467-119B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11467-119B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteBreastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteBreastDonor1_CNhs11052_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor1_CNhs11052_tpm_rev PreadipocyteBreastD1- bigWig Preadipocyte - breast, donor1_CNhs11052_11467-119B9_reverse 1 2728 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20breast%2c%20donor1.CNhs11052.11467-119B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - breast, donor1_CNhs11052_11467-119B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11467-119B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteBreastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteBreastDonor1_CNhs11052_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor2_CNhs11971_ctss_fwd PreadipocyteBreastD2+ bigWig Preadipocyte - breast, donor2_CNhs11971_11328-117E5_forward 0 2729 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20breast%2c%20donor2.CNhs11971.11328-117E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - breast, donor2_CNhs11971_11328-117E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11328-117E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteBreastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteBreastDonor2_CNhs11971_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor2_CNhs11971_tpm_fwd PreadipocyteBreastD2+ bigWig Preadipocyte - breast, donor2_CNhs11971_11328-117E5_forward 1 2729 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20breast%2c%20donor2.CNhs11971.11328-117E5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - breast, donor2_CNhs11971_11328-117E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11328-117E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteBreastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteBreastDonor2_CNhs11971_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor2_CNhs11971_ctss_rev PreadipocyteBreastD2- bigWig Preadipocyte - breast, donor2_CNhs11971_11328-117E5_reverse 0 2730 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20breast%2c%20donor2.CNhs11971.11328-117E5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - breast, donor2_CNhs11971_11328-117E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11328-117E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteBreastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteBreastDonor2_CNhs11971_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor2_CNhs11971_tpm_rev PreadipocyteBreastD2- bigWig Preadipocyte - breast, donor2_CNhs11971_11328-117E5_reverse 1 2730 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20breast%2c%20donor2.CNhs11971.11328-117E5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - breast, donor2_CNhs11971_11328-117E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11328-117E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteBreastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteBreastDonor2_CNhs11971_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor1_CNhs11065_ctss_fwd PreadipocyteOmentalD1+ bigWig Preadipocyte - omental, donor1_CNhs11065_11468-119C1_forward 0 2731 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20omental%2c%20donor1.CNhs11065.11468-119C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor1_CNhs11065_11468-119C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11468-119C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor1_CNhs11065_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor1_CNhs11065_tpm_fwd PreadipocyteOmentalD1+ bigWig Preadipocyte - omental, donor1_CNhs11065_11468-119C1_forward 1 2731 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20omental%2c%20donor1.CNhs11065.11468-119C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor1_CNhs11065_11468-119C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11468-119C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor1_CNhs11065_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor1_CNhs11065_ctss_rev PreadipocyteOmentalD1- bigWig Preadipocyte - omental, donor1_CNhs11065_11468-119C1_reverse 0 2732 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20omental%2c%20donor1.CNhs11065.11468-119C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor1_CNhs11065_11468-119C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11468-119C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor1_CNhs11065_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor1_CNhs11065_tpm_rev PreadipocyteOmentalD1- bigWig Preadipocyte - omental, donor1_CNhs11065_11468-119C1_reverse 1 2732 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20omental%2c%20donor1.CNhs11065.11468-119C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor1_CNhs11065_11468-119C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11468-119C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor1_CNhs11065_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor2_CNhs11902_ctss_fwd PreadipocyteOmentalD2+ bigWig Preadipocyte - omental, donor2_CNhs11902_11329-117E6_forward 0 2733 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20omental%2c%20donor2.CNhs11902.11329-117E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor2_CNhs11902_11329-117E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11329-117E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor2_CNhs11902_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor2_CNhs11902_tpm_fwd PreadipocyteOmentalD2+ bigWig Preadipocyte - omental, donor2_CNhs11902_11329-117E6_forward 1 2733 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20omental%2c%20donor2.CNhs11902.11329-117E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor2_CNhs11902_11329-117E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11329-117E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor2_CNhs11902_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor2_CNhs11902_ctss_rev PreadipocyteOmentalD2- bigWig Preadipocyte - omental, donor2_CNhs11902_11329-117E6_reverse 0 2734 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20omental%2c%20donor2.CNhs11902.11329-117E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor2_CNhs11902_11329-117E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11329-117E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor2_CNhs11902_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor2_CNhs11902_tpm_rev PreadipocyteOmentalD2- bigWig Preadipocyte - omental, donor2_CNhs11902_11329-117E6_reverse 1 2734 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20omental%2c%20donor2.CNhs11902.11329-117E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor2_CNhs11902_11329-117E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11329-117E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor2_CNhs11902_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor3_CNhs12013_ctss_fwd PreadipocyteOmentalD3+ bigWig Preadipocyte - omental, donor3_CNhs12013_11403-118D8_forward 0 2735 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20omental%2c%20donor3.CNhs12013.11403-118D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor3_CNhs12013_11403-118D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11403-118D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor3_CNhs12013_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor3_CNhs12013_tpm_fwd PreadipocyteOmentalD3+ bigWig Preadipocyte - omental, donor3_CNhs12013_11403-118D8_forward 1 2735 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20omental%2c%20donor3.CNhs12013.11403-118D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor3_CNhs12013_11403-118D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11403-118D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor3_CNhs12013_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor3_CNhs12013_ctss_rev PreadipocyteOmentalD3- bigWig Preadipocyte - omental, donor3_CNhs12013_11403-118D8_reverse 0 2736 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20omental%2c%20donor3.CNhs12013.11403-118D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor3_CNhs12013_11403-118D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11403-118D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor3_CNhs12013_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor3_CNhs12013_tpm_rev PreadipocyteOmentalD3- bigWig Preadipocyte - omental, donor3_CNhs12013_11403-118D8_reverse 1 2736 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20omental%2c%20donor3.CNhs12013.11403-118D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor3_CNhs12013_11403-118D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11403-118D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor3_CNhs12013_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8\ urlLabel FANTOM5 Details:\ PreadipocytePerirenalDonor1_CNhs12065_ctss_fwd PreadipocytePerirenalD1+ bigWig Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_forward 0 2737 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20perirenal%2c%20donor1.CNhs12065.11469-119C2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11469-119C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocytePerirenalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocytePerirenalDonor1_CNhs12065_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2\ urlLabel FANTOM5 Details:\ PreadipocytePerirenalDonor1_CNhs12065_tpm_fwd PreadipocytePerirenalD1+ bigWig Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_forward 1 2737 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20perirenal%2c%20donor1.CNhs12065.11469-119C2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11469-119C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocytePerirenalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocytePerirenalDonor1_CNhs12065_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2\ urlLabel FANTOM5 Details:\ PreadipocytePerirenalDonor1_CNhs12065_ctss_rev PreadipocytePerirenalD1- bigWig Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_reverse 0 2738 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20perirenal%2c%20donor1.CNhs12065.11469-119C2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11469-119C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocytePerirenalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocytePerirenalDonor1_CNhs12065_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2\ urlLabel FANTOM5 Details:\ PreadipocytePerirenalDonor1_CNhs12065_tpm_rev PreadipocytePerirenalD1- bigWig Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_reverse 1 2738 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20perirenal%2c%20donor1.CNhs12065.11469-119C2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11469-119C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocytePerirenalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocytePerirenalDonor1_CNhs12065_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor1_CNhs11081_ctss_fwd PreadipocyteSubcutaneousD1+ bigWig Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_forward 0 2739 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor1.CNhs11081.11279-116I1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11279-116I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor1_CNhs11081_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor1_CNhs11081_tpm_fwd PreadipocyteSubcutaneousD1+ bigWig Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_forward 1 2739 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor1.CNhs11081.11279-116I1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11279-116I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor1_CNhs11081_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor1_CNhs11081_ctss_rev PreadipocyteSubcutaneousD1- bigWig Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_reverse 0 2740 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor1.CNhs11081.11279-116I1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11279-116I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor1_CNhs11081_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor1_CNhs11081_tpm_rev PreadipocyteSubcutaneousD1- bigWig Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_reverse 1 2740 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor1.CNhs11081.11279-116I1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11279-116I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor1_CNhs11081_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor2_CNhs11981_ctss_fwd PreadipocyteSubcutaneousD2+ bigWig Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_forward 0 2741 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor2.CNhs11981.11356-117H6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11356-117H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor2_CNhs11981_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor2_CNhs11981_tpm_fwd PreadipocyteSubcutaneousD2+ bigWig Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_forward 1 2741 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor2.CNhs11981.11356-117H6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11356-117H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor2_CNhs11981_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor2_CNhs11981_ctss_rev PreadipocyteSubcutaneousD2- bigWig Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_reverse 0 2742 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor2.CNhs11981.11356-117H6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11356-117H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor2_CNhs11981_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor2_CNhs11981_tpm_rev PreadipocyteSubcutaneousD2- bigWig Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_reverse 1 2742 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor2.CNhs11981.11356-117H6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11356-117H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor2_CNhs11981_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor3_CNhs12038_ctss_fwd PreadipocyteSubcutaneousD3+ bigWig Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_forward 0 2743 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor3.CNhs12038.11428-118G6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11428-118G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor3_CNhs12038_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor3_CNhs12038_tpm_fwd PreadipocyteSubcutaneousD3+ bigWig Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_forward 1 2743 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor3.CNhs12038.11428-118G6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11428-118G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor3_CNhs12038_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor3_CNhs12038_ctss_rev PreadipocyteSubcutaneousD3- bigWig Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_reverse 0 2744 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor3.CNhs12038.11428-118G6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11428-118G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor3_CNhs12038_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor3_CNhs12038_tpm_rev PreadipocyteSubcutaneousD3- bigWig Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_reverse 1 2744 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor3.CNhs12038.11428-118G6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11428-118G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor3_CNhs12038_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor1_CNhs11082_ctss_fwd PreadipocyteVisceralD1+ bigWig Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_forward 0 2745 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20visceral%2c%20donor1.CNhs11082.11280-116I2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11280-116I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor1_CNhs11082_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor1_CNhs11082_tpm_fwd PreadipocyteVisceralD1+ bigWig Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_forward 1 2745 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20visceral%2c%20donor1.CNhs11082.11280-116I2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11280-116I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor1_CNhs11082_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor1_CNhs11082_ctss_rev PreadipocyteVisceralD1- bigWig Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_reverse 0 2746 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20visceral%2c%20donor1.CNhs11082.11280-116I2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11280-116I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor1_CNhs11082_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor1_CNhs11082_tpm_rev PreadipocyteVisceralD1- bigWig Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_reverse 1 2746 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20visceral%2c%20donor1.CNhs11082.11280-116I2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11280-116I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor1_CNhs11082_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor2_CNhs11982_ctss_fwd PreadipocyteVisceralD2+ bigWig Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_forward 0 2747 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20visceral%2c%20donor2.CNhs11982.11357-117H7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11357-117H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor2_CNhs11982_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor2_CNhs11982_tpm_fwd PreadipocyteVisceralD2+ bigWig Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_forward 1 2747 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20visceral%2c%20donor2.CNhs11982.11357-117H7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11357-117H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor2_CNhs11982_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor2_CNhs11982_ctss_rev PreadipocyteVisceralD2- bigWig Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_reverse 0 2748 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20visceral%2c%20donor2.CNhs11982.11357-117H7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11357-117H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor2_CNhs11982_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor2_CNhs11982_tpm_rev PreadipocyteVisceralD2- bigWig Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_reverse 1 2748 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20visceral%2c%20donor2.CNhs11982.11357-117H7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11357-117H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor2_CNhs11982_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor3_CNhs12039_ctss_fwd PreadipocyteVisceralD3+ bigWig Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_forward 0 2749 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20visceral%2c%20donor3.CNhs12039.11429-118G7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11429-118G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor3_CNhs12039_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor3_CNhs12039_tpm_fwd PreadipocyteVisceralD3+ bigWig Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_forward 1 2749 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20visceral%2c%20donor3.CNhs12039.11429-118G7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11429-118G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor3_CNhs12039_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor3_CNhs12039_ctss_rev PreadipocyteVisceralD3- bigWig Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_reverse 0 2750 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20visceral%2c%20donor3.CNhs12039.11429-118G7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11429-118G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor3_CNhs12039_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor3_CNhs12039_tpm_rev PreadipocyteVisceralD3- bigWig Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_reverse 1 2750 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Preadipocyte%20-%20visceral%2c%20donor3.CNhs12039.11429-118G7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11429-118G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor3_CNhs12039_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsPolarizedDonor1_CNhs10882_ctss_fwd ProstateEpithelialCellsD1+ bigWig Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_forward 0 2751 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Epithelial%20Cells%20%28polarized%29%2c%20donor1.CNhs10882.11253-116F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11253-116F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsPolarizedDonor1_CNhs10882_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsPolarizedDonor1_CNhs10882_tpm_fwd ProstateEpithelialCellsD1+ bigWig Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_forward 1 2751 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Epithelial%20Cells%20%28polarized%29%2c%20donor1.CNhs10882.11253-116F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11253-116F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsPolarizedDonor1_CNhs10882_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsPolarizedDonor1_CNhs10882_ctss_rev ProstateEpithelialCellsD1- bigWig Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_reverse 0 2752 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Epithelial%20Cells%20%28polarized%29%2c%20donor1.CNhs10882.11253-116F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11253-116F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsPolarizedDonor1_CNhs10882_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsPolarizedDonor1_CNhs10882_tpm_rev ProstateEpithelialCellsD1- bigWig Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_reverse 1 2752 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Epithelial%20Cells%20%28polarized%29%2c%20donor1.CNhs10882.11253-116F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11253-116F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsPolarizedDonor1_CNhs10882_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor2_CNhs11972_ctss_fwd ProstateEpithelialCellsD2+ bigWig Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_forward 0 2753 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Epithelial%20Cells%2c%20donor2.CNhs11972.11331-117E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11331-117E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsDonor2_CNhs11972_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor2_CNhs11972_tpm_fwd ProstateEpithelialCellsD2+ bigWig Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_forward 1 2753 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Epithelial%20Cells%2c%20donor2.CNhs11972.11331-117E8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11331-117E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsDonor2_CNhs11972_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor2_CNhs11972_ctss_rev ProstateEpithelialCellsD2- bigWig Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_reverse 0 2754 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Epithelial%20Cells%2c%20donor2.CNhs11972.11331-117E8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11331-117E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsDonor2_CNhs11972_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor2_CNhs11972_tpm_rev ProstateEpithelialCellsD2- bigWig Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_reverse 1 2754 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Epithelial%20Cells%2c%20donor2.CNhs11972.11331-117E8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11331-117E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsDonor2_CNhs11972_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor3_CNhs12014_ctss_fwd ProstateEpithelialCellsD3+ bigWig Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_forward 0 2755 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Epithelial%20Cells%2c%20donor3.CNhs12014.11404-118D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11404-118D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsDonor3_CNhs12014_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor3_CNhs12014_tpm_fwd ProstateEpithelialCellsD3+ bigWig Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_forward 1 2755 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Epithelial%20Cells%2c%20donor3.CNhs12014.11404-118D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11404-118D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsDonor3_CNhs12014_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor3_CNhs12014_ctss_rev ProstateEpithelialCellsD3- bigWig Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_reverse 0 2756 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Epithelial%20Cells%2c%20donor3.CNhs12014.11404-118D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11404-118D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsDonor3_CNhs12014_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor3_CNhs12014_tpm_rev ProstateEpithelialCellsD3- bigWig Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_reverse 1 2756 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Epithelial%20Cells%2c%20donor3.CNhs12014.11404-118D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11404-118D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsDonor3_CNhs12014_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor1_CNhs10883_ctss_fwd ProstateStromalCellsD1+ bigWig Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_forward 0 2757 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Stromal%20Cells%2c%20donor1.CNhs10883.11254-116F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11254-116F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor1_CNhs10883_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor1_CNhs10883_tpm_fwd ProstateStromalCellsD1+ bigWig Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_forward 1 2757 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Stromal%20Cells%2c%20donor1.CNhs10883.11254-116F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11254-116F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor1_CNhs10883_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor1_CNhs10883_ctss_rev ProstateStromalCellsD1- bigWig Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_reverse 0 2758 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Stromal%20Cells%2c%20donor1.CNhs10883.11254-116F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11254-116F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor1_CNhs10883_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor1_CNhs10883_tpm_rev ProstateStromalCellsD1- bigWig Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_reverse 1 2758 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Stromal%20Cells%2c%20donor1.CNhs10883.11254-116F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11254-116F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor1_CNhs10883_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor2_CNhs11973_ctss_fwd ProstateStromalCellsD2+ bigWig Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_forward 0 2759 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Stromal%20Cells%2c%20donor2.CNhs11973.11332-117E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11332-117E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor2_CNhs11973_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor2_CNhs11973_tpm_fwd ProstateStromalCellsD2+ bigWig Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_forward 1 2759 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Stromal%20Cells%2c%20donor2.CNhs11973.11332-117E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11332-117E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor2_CNhs11973_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor2_CNhs11973_ctss_rev ProstateStromalCellsD2- bigWig Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_reverse 0 2760 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Stromal%20Cells%2c%20donor2.CNhs11973.11332-117E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11332-117E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor2_CNhs11973_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor2_CNhs11973_tpm_rev ProstateStromalCellsD2- bigWig Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_reverse 1 2760 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Stromal%20Cells%2c%20donor2.CNhs11973.11332-117E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11332-117E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor2_CNhs11973_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor3_CNhs12015_ctss_fwd ProstateStromalCellsD3+ bigWig Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_forward 0 2761 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Stromal%20Cells%2c%20donor3.CNhs12015.11405-118E1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11405-118E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor3_CNhs12015_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor3_CNhs12015_tpm_fwd ProstateStromalCellsD3+ bigWig Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_forward 1 2761 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Stromal%20Cells%2c%20donor3.CNhs12015.11405-118E1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11405-118E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor3_CNhs12015_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor3_CNhs12015_ctss_rev ProstateStromalCellsD3- bigWig Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_reverse 0 2762 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Stromal%20Cells%2c%20donor3.CNhs12015.11405-118E1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11405-118E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor3_CNhs12015_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor3_CNhs12015_tpm_rev ProstateStromalCellsD3- bigWig Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_reverse 1 2762 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Prostate%20Stromal%20Cells%2c%20donor3.CNhs12015.11405-118E1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11405-118E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor3_CNhs12015_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor1_CNhs11331_ctss_fwd RcecD1+ bigWig Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_forward 0 2763 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor1.CNhs11331.11516-119H4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11516-119H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RcecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalCorticalEpithelialCellsDonor1_CNhs11331_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor1_CNhs11331_tpm_fwd RcecD1+ bigWig Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_forward 1 2763 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor1.CNhs11331.11516-119H4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11516-119H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RcecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalCorticalEpithelialCellsDonor1_CNhs11331_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor1_CNhs11331_ctss_rev RcecD1- bigWig Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_reverse 0 2764 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor1.CNhs11331.11516-119H4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11516-119H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RcecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalCorticalEpithelialCellsDonor1_CNhs11331_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor1_CNhs11331_tpm_rev RcecD1- bigWig Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_reverse 1 2764 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor1.CNhs11331.11516-119H4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11516-119H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RcecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalCorticalEpithelialCellsDonor1_CNhs11331_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor2_CNhs12728_ctss_fwd RcecD2+ bigWig Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_forward 0 2765 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor2.CNhs12728.11596-120H3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11596-120H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RcecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalCorticalEpithelialCellsDonor2_CNhs12728_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor2_CNhs12728_tpm_fwd RcecD2+ bigWig Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_forward 1 2765 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor2.CNhs12728.11596-120H3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11596-120H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RcecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalCorticalEpithelialCellsDonor2_CNhs12728_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor2_CNhs12728_ctss_rev RcecD2- bigWig Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_reverse 0 2766 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor2.CNhs12728.11596-120H3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11596-120H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RcecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalCorticalEpithelialCellsDonor2_CNhs12728_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor2_CNhs12728_tpm_rev RcecD2- bigWig Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_reverse 1 2766 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor2.CNhs12728.11596-120H3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11596-120H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RcecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalCorticalEpithelialCellsDonor2_CNhs12728_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor1_CNhs11332_ctss_fwd RenalEpithelialCellsD1+ bigWig Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_forward 0 2767 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Epithelial%20Cells%2c%20donor1.CNhs11332.11517-119H5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11517-119H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalEpithelialCellsDonor1_CNhs11332_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor1_CNhs11332_tpm_fwd RenalEpithelialCellsD1+ bigWig Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_forward 1 2767 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Epithelial%20Cells%2c%20donor1.CNhs11332.11517-119H5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11517-119H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalEpithelialCellsDonor1_CNhs11332_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor1_CNhs11332_ctss_rev RenalEpithelialCellsD1- bigWig Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_reverse 0 2768 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Epithelial%20Cells%2c%20donor1.CNhs11332.11517-119H5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11517-119H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalEpithelialCellsDonor1_CNhs11332_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor1_CNhs11332_tpm_rev RenalEpithelialCellsD1- bigWig Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_reverse 1 2768 0 0 255 127 127 255 0 0 0 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strand=forward\ track RenalGlomerularEndothelialCellsDonor1_CNhs12074_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11514-119H2\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor1_CNhs12074_ctss_rev RgecD1- bigWig Renal Glomerular Endothelial Cells, donor1_CNhs12074_11514-119H2_reverse 0 2780 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11514-119H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor1.CNhs12074.11514-119H2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Renal Glomerular Endothelial Cells, donor1_CNhs12074_11514-119H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11514-119H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RgecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalGlomerularEndothelialCellsDonor1_CNhs12074_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11514-119H2\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor1_CNhs12074_tpm_rev RgecD1- bigWig Renal Glomerular Endothelial Cells, donor1_CNhs12074_11514-119H2_reverse 1 2780 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11514-119H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor1.CNhs12074.11514-119H2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Renal Glomerular Endothelial Cells, donor1_CNhs12074_11514-119H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11514-119H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RgecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalGlomerularEndothelialCellsDonor1_CNhs12074_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11514-119H2\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor2_CNhs12086_ctss_fwd RgecD2+ bigWig Renal Glomerular Endothelial Cells, donor2_CNhs12086_11594-120H1_forward 0 2781 255 0 0 255 127 127 0 0 0 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/gbdb/hg19/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor2.CNhs12086.11594-120H1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Glomerular Endothelial Cells, donor2_CNhs12086_11594-120H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11594-120H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RgecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalGlomerularEndothelialCellsDonor2_CNhs12086_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11594-120H1\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor2_CNhs12086_ctss_rev RgecD2- bigWig Renal Glomerular Endothelial Cells, donor2_CNhs12086_11594-120H1_reverse 0 2782 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11594-120H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor2.CNhs12086.11594-120H1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Renal Glomerular Endothelial Cells, 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sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalGlomerularEndothelialCellsDonor2_CNhs12086_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11594-120H1\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor3_CNhs12624_ctss_fwd RgecD3+ bigWig Renal Glomerular Endothelial Cells, donor3_CNhs12624_11675-122H1_forward 0 2783 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11675-122H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor3.CNhs12624.11675-122H1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Glomerular Endothelial Cells, donor3_CNhs12624_11675-122H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11675-122H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RgecD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalGlomerularEndothelialCellsDonor3_CNhs12624_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11675-122H1\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor3_CNhs12624_tpm_fwd RgecD3+ bigWig Renal Glomerular Endothelial Cells, donor3_CNhs12624_11675-122H1_forward 1 2783 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11675-122H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor3.CNhs12624.11675-122H1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Glomerular Endothelial Cells, donor3_CNhs12624_11675-122H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11675-122H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RgecD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalGlomerularEndothelialCellsDonor3_CNhs12624_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11675-122H1\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor3_CNhs12624_ctss_rev RgecD3- bigWig Renal Glomerular Endothelial Cells, donor3_CNhs12624_11675-122H1_reverse 0 2784 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11675-122H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor3.CNhs12624.11675-122H1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Renal Glomerular Endothelial Cells, donor3_CNhs12624_11675-122H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11675-122H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RgecD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalGlomerularEndothelialCellsDonor3_CNhs12624_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11675-122H1\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor3_CNhs12624_tpm_rev RgecD3- bigWig Renal Glomerular Endothelial Cells, donor3_CNhs12624_11675-122H1_reverse 1 2784 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11675-122H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor3.CNhs12624.11675-122H1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Renal Glomerular Endothelial Cells, donor3_CNhs12624_11675-122H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11675-122H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RgecD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalGlomerularEndothelialCellsDonor3_CNhs12624_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11675-122H1\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor4_CNhs13080_ctss_fwd RgecD4+ bigWig Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_forward 0 2785 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor4.CNhs13080.11783-124B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11783-124B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RgecD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalGlomerularEndothelialCellsDonor4_CNhs13080_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor4_CNhs13080_tpm_fwd RgecD4+ bigWig Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_forward 1 2785 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor4.CNhs13080.11783-124B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11783-124B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RgecD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalGlomerularEndothelialCellsDonor4_CNhs13080_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor4_CNhs13080_ctss_rev RgecD4- bigWig Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_reverse 0 2786 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor4.CNhs13080.11783-124B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11783-124B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RgecD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalGlomerularEndothelialCellsDonor4_CNhs13080_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor4_CNhs13080_tpm_rev RgecD4- bigWig Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_reverse 1 2786 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor4.CNhs13080.11783-124B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11783-124B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RgecD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalGlomerularEndothelialCellsDonor4_CNhs13080_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor0_CNhs10842_ctss_fwd RpecD0+ bigWig Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_forward 0 2787 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor0.CNhs10842.11215-116A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11215-116A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor0_CNhs10842_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor0_CNhs10842_tpm_fwd RpecD0+ bigWig Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_forward 1 2787 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor0.CNhs10842.11215-116A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11215-116A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor0_CNhs10842_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor0_CNhs10842_ctss_rev RpecD0- bigWig Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_reverse 0 2788 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor0.CNhs10842.11215-116A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, 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sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor0_CNhs10842_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor1_CNhs11338_ctss_fwd RpecD1+ bigWig Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_forward 0 2789 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs11338.11528-119I7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11528-119I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor1_CNhs11338_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor1_CNhs11338_tpm_fwd RpecD1+ bigWig Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_forward 1 2789 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs11338.11528-119I7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11528-119I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor1_CNhs11338_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor1_CNhs11338_ctss_rev RpecD1- bigWig Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_reverse 0 2790 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs11338.11528-119I7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11528-119I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor1_CNhs11338_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor1_CNhs11338_tpm_rev RpecD1- bigWig Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_reverse 1 2790 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs11338.11528-119I7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11528-119I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor1_CNhs11338_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor2_CNhs12096_ctss_fwd RpecD2+ bigWig Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_forward 0 2791 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor2.CNhs12096.11608-120I6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11608-120I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor2_CNhs12096_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor2_CNhs12096_tpm_fwd RpecD2+ bigWig Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_forward 1 2791 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor2.CNhs12096.11608-120I6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11608-120I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor2_CNhs12096_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor2_CNhs12096_ctss_rev RpecD2- bigWig Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_reverse 0 2792 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor2.CNhs12096.11608-120I6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11608-120I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor2_CNhs12096_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor2_CNhs12096_tpm_rev RpecD2- bigWig Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_reverse 1 2792 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor2.CNhs12096.11608-120I6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11608-120I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor2_CNhs12096_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor3_CNhs12733_ctss_fwd RpecD3+ bigWig Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_forward 0 2793 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor3.CNhs12733.11689-122I6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11689-122I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor3_CNhs12733_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor3_CNhs12733_tpm_fwd RpecD3+ bigWig Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_forward 1 2793 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor3.CNhs12733.11689-122I6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11689-122I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor3_CNhs12733_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor3_CNhs12733_ctss_rev RpecD3- bigWig Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_reverse 0 2794 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor3.CNhs12733.11689-122I6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11689-122I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor3_CNhs12733_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor3_CNhs12733_tpm_rev RpecD3- bigWig Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_reverse 1 2794 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor3.CNhs12733.11689-122I6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11689-122I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor3_CNhs12733_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor1_CNhs11330_ctss_fwd RptecD1+ bigWig Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_forward 0 2795 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor1.CNhs11330.11515-119H3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11515-119H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor1_CNhs11330_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor1_CNhs11330_tpm_fwd RptecD1+ bigWig Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_forward 1 2795 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor1.CNhs11330.11515-119H3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11515-119H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor1_CNhs11330_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor1_CNhs11330_ctss_rev RptecD1- bigWig Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_reverse 0 2796 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor1.CNhs11330.11515-119H3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11515-119H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor1_CNhs11330_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor1_CNhs11330_tpm_rev RptecD1- bigWig Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_reverse 1 2796 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor1.CNhs11330.11515-119H3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11515-119H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor1_CNhs11330_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor2_CNhs12087_ctss_fwd RptecD2+ bigWig Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_forward 0 2797 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor2.CNhs12087.11595-120H2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11595-120H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor2_CNhs12087_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor2_CNhs12087_tpm_fwd RptecD2+ bigWig Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_forward 1 2797 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor2.CNhs12087.11595-120H2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11595-120H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor2_CNhs12087_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor2_CNhs12087_ctss_rev RptecD2- bigWig Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_reverse 0 2798 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor2.CNhs12087.11595-120H2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11595-120H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor2_CNhs12087_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor2_CNhs12087_tpm_rev RptecD2- bigWig Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_reverse 1 2798 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor2.CNhs12087.11595-120H2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11595-120H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor2_CNhs12087_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor3_CNhs12120_ctss_fwd RptecD3+ bigWig Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_forward 0 2799 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor3.CNhs12120.11676-122H2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11676-122H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor3_CNhs12120_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor3_CNhs12120_tpm_fwd RptecD3+ bigWig Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_forward 1 2799 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor3.CNhs12120.11676-122H2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11676-122H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor3_CNhs12120_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor3_CNhs12120_ctss_rev RptecD3- bigWig Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_reverse 0 2800 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor3.CNhs12120.11676-122H2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11676-122H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor3_CNhs12120_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor3_CNhs12120_tpm_rev RptecD3- bigWig Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_reverse 1 2800 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor3.CNhs12120.11676-122H2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11676-122H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor3_CNhs12120_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor1_CNhs12810_ctss_fwd SalivaryAcinarCellsD1+ bigWig salivary acinar cells, donor1_CNhs12810_11771-123I7_forward 0 2801 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/salivary%20acinar%20cells%2c%20donor1.CNhs12810.11771-123I7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor1_CNhs12810_11771-123I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11771-123I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor1_CNhs12810_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor1_CNhs12810_tpm_fwd SalivaryAcinarCellsD1+ bigWig salivary acinar cells, donor1_CNhs12810_11771-123I7_forward 1 2801 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/salivary%20acinar%20cells%2c%20donor1.CNhs12810.11771-123I7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor1_CNhs12810_11771-123I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11771-123I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor1_CNhs12810_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor1_CNhs12810_ctss_rev SalivaryAcinarCellsD1- bigWig salivary acinar cells, donor1_CNhs12810_11771-123I7_reverse 0 2802 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/salivary%20acinar%20cells%2c%20donor1.CNhs12810.11771-123I7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor1_CNhs12810_11771-123I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11771-123I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor1_CNhs12810_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor1_CNhs12810_tpm_rev SalivaryAcinarCellsD1- bigWig salivary acinar cells, donor1_CNhs12810_11771-123I7_reverse 1 2802 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/salivary%20acinar%20cells%2c%20donor1.CNhs12810.11771-123I7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor1_CNhs12810_11771-123I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11771-123I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor1_CNhs12810_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor2_CNhs12811_ctss_fwd SalivaryAcinarCellsD2+ bigWig salivary acinar cells, donor2_CNhs12811_11772-123I8_forward 0 2803 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/salivary%20acinar%20cells%2c%20donor2.CNhs12811.11772-123I8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor2_CNhs12811_11772-123I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11772-123I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor2_CNhs12811_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor2_CNhs12811_tpm_fwd SalivaryAcinarCellsD2+ bigWig salivary acinar cells, donor2_CNhs12811_11772-123I8_forward 1 2803 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/salivary%20acinar%20cells%2c%20donor2.CNhs12811.11772-123I8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor2_CNhs12811_11772-123I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11772-123I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor2_CNhs12811_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor2_CNhs12811_ctss_rev SalivaryAcinarCellsD2- bigWig salivary acinar cells, donor2_CNhs12811_11772-123I8_reverse 0 2804 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/salivary%20acinar%20cells%2c%20donor2.CNhs12811.11772-123I8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor2_CNhs12811_11772-123I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11772-123I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor2_CNhs12811_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor2_CNhs12811_tpm_rev SalivaryAcinarCellsD2- bigWig salivary acinar cells, donor2_CNhs12811_11772-123I8_reverse 1 2804 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/salivary%20acinar%20cells%2c%20donor2.CNhs12811.11772-123I8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor2_CNhs12811_11772-123I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11772-123I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor2_CNhs12811_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor3_CNhs12812_ctss_fwd SalivaryAcinarCellsD3+ bigWig salivary acinar cells, donor3_CNhs12812_11773-123I9_forward 0 2805 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/salivary%20acinar%20cells%2c%20donor3.CNhs12812.11773-123I9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor3_CNhs12812_11773-123I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11773-123I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor3_CNhs12812_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor3_CNhs12812_tpm_fwd SalivaryAcinarCellsD3+ bigWig salivary acinar cells, donor3_CNhs12812_11773-123I9_forward 1 2805 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/salivary%20acinar%20cells%2c%20donor3.CNhs12812.11773-123I9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor3_CNhs12812_11773-123I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11773-123I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor3_CNhs12812_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor3_CNhs12812_ctss_rev SalivaryAcinarCellsD3- bigWig salivary acinar cells, donor3_CNhs12812_11773-123I9_reverse 0 2806 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/salivary%20acinar%20cells%2c%20donor3.CNhs12812.11773-123I9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor3_CNhs12812_11773-123I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11773-123I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor3_CNhs12812_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor3_CNhs12812_tpm_rev SalivaryAcinarCellsD3- bigWig salivary acinar cells, donor3_CNhs12812_11773-123I9_reverse 1 2806 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/salivary%20acinar%20cells%2c%20donor3.CNhs12812.11773-123I9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor3_CNhs12812_11773-123I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11773-123I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor3_CNhs12812_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9\ urlLabel FANTOM5 Details:\ SchwannCellsDonor1_CNhs12073_ctss_fwd SchwannCellsD1+ bigWig Schwann Cells, donor1_CNhs12073_11498-119F4_forward 0 2807 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Schwann%20Cells%2c%20donor1.CNhs12073.11498-119F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor1_CNhs12073_11498-119F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11498-119F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor1_CNhs12073_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4\ urlLabel FANTOM5 Details:\ SchwannCellsDonor1_CNhs12073_tpm_fwd SchwannCellsD1+ bigWig Schwann Cells, donor1_CNhs12073_11498-119F4_forward 1 2807 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Schwann%20Cells%2c%20donor1.CNhs12073.11498-119F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor1_CNhs12073_11498-119F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11498-119F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor1_CNhs12073_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4\ urlLabel FANTOM5 Details:\ SchwannCellsDonor1_CNhs12073_ctss_rev SchwannCellsD1- bigWig Schwann Cells, donor1_CNhs12073_11498-119F4_reverse 0 2808 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Schwann%20Cells%2c%20donor1.CNhs12073.11498-119F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor1_CNhs12073_11498-119F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11498-119F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor1_CNhs12073_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4\ urlLabel FANTOM5 Details:\ SchwannCellsDonor1_CNhs12073_tpm_rev SchwannCellsD1- bigWig Schwann Cells, donor1_CNhs12073_11498-119F4_reverse 1 2808 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Schwann%20Cells%2c%20donor1.CNhs12073.11498-119F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor1_CNhs12073_11498-119F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11498-119F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor1_CNhs12073_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4\ urlLabel FANTOM5 Details:\ SchwannCellsDonor2_CNhs12345_ctss_fwd SchwannCellsD2+ bigWig Schwann Cells, donor2_CNhs12345_11578-120F3_forward 0 2809 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Schwann%20Cells%2c%20donor2.CNhs12345.11578-120F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor2_CNhs12345_11578-120F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11578-120F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor2_CNhs12345_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor2_CNhs12345_tpm_fwd SchwannCellsD2+ bigWig Schwann Cells, donor2_CNhs12345_11578-120F3_forward 1 2809 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Schwann%20Cells%2c%20donor2.CNhs12345.11578-120F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor2_CNhs12345_11578-120F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11578-120F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor2_CNhs12345_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor2_CNhs12345_ctss_rev SchwannCellsD2- bigWig Schwann Cells, donor2_CNhs12345_11578-120F3_reverse 0 2810 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Schwann%20Cells%2c%20donor2.CNhs12345.11578-120F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor2_CNhs12345_11578-120F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11578-120F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor2_CNhs12345_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor2_CNhs12345_tpm_rev SchwannCellsD2- bigWig Schwann Cells, donor2_CNhs12345_11578-120F3_reverse 1 2810 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Schwann%20Cells%2c%20donor2.CNhs12345.11578-120F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor2_CNhs12345_11578-120F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11578-120F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor2_CNhs12345_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor3_CNhs12621_ctss_fwd SchwannCellsD3+ bigWig Schwann Cells, donor3_CNhs12621_11659-122F3_forward 0 2811 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Schwann%20Cells%2c%20donor3.CNhs12621.11659-122F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor3_CNhs12621_11659-122F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11659-122F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor3_CNhs12621_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor3_CNhs12621_tpm_fwd SchwannCellsD3+ bigWig Schwann Cells, donor3_CNhs12621_11659-122F3_forward 1 2811 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Schwann%20Cells%2c%20donor3.CNhs12621.11659-122F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor3_CNhs12621_11659-122F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11659-122F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor3_CNhs12621_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor3_CNhs12621_ctss_rev SchwannCellsD3- bigWig Schwann Cells, donor3_CNhs12621_11659-122F3_reverse 0 2812 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Schwann%20Cells%2c%20donor3.CNhs12621.11659-122F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor3_CNhs12621_11659-122F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11659-122F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor3_CNhs12621_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor3_CNhs12621_tpm_rev SchwannCellsD3- bigWig Schwann Cells, donor3_CNhs12621_11659-122F3_reverse 1 2812 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Schwann%20Cells%2c%20donor3.CNhs12621.11659-122F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor3_CNhs12621_11659-122F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11659-122F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor3_CNhs12621_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3\ urlLabel FANTOM5 Details:\ SebocyteDonor1_CNhs10847_ctss_fwd SebocyteD1+ bigWig Sebocyte, donor1_CNhs10847_11220-116B5_forward 0 2813 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sebocyte%2c%20donor1.CNhs10847.11220-116B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor1_CNhs10847_11220-116B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11220-116B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor1_CNhs10847_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5\ urlLabel FANTOM5 Details:\ SebocyteDonor1_CNhs10847_tpm_fwd SebocyteD1+ bigWig Sebocyte, donor1_CNhs10847_11220-116B5_forward 1 2813 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sebocyte%2c%20donor1.CNhs10847.11220-116B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor1_CNhs10847_11220-116B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11220-116B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor1_CNhs10847_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5\ urlLabel FANTOM5 Details:\ SebocyteDonor1_CNhs10847_ctss_rev SebocyteD1- bigWig Sebocyte, donor1_CNhs10847_11220-116B5_reverse 0 2814 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sebocyte%2c%20donor1.CNhs10847.11220-116B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor1_CNhs10847_11220-116B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11220-116B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor1_CNhs10847_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5\ urlLabel FANTOM5 Details:\ SebocyteDonor1_CNhs10847_tpm_rev SebocyteD1- bigWig Sebocyte, donor1_CNhs10847_11220-116B5_reverse 1 2814 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sebocyte%2c%20donor1.CNhs10847.11220-116B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor1_CNhs10847_11220-116B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11220-116B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor1_CNhs10847_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5\ urlLabel FANTOM5 Details:\ SebocyteDonor2_CNhs11951_ctss_fwd SebocyteD2+ bigWig Sebocyte, donor2_CNhs11951_11301-117B5_forward 0 2815 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sebocyte%2c%20donor2.CNhs11951.11301-117B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor2_CNhs11951_11301-117B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11301-117B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor2_CNhs11951_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5\ urlLabel FANTOM5 Details:\ SebocyteDonor2_CNhs11951_tpm_fwd SebocyteD2+ bigWig Sebocyte, donor2_CNhs11951_11301-117B5_forward 1 2815 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sebocyte%2c%20donor2.CNhs11951.11301-117B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor2_CNhs11951_11301-117B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11301-117B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor2_CNhs11951_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5\ urlLabel FANTOM5 Details:\ SebocyteDonor2_CNhs11951_ctss_rev SebocyteD2- bigWig Sebocyte, donor2_CNhs11951_11301-117B5_reverse 0 2816 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sebocyte%2c%20donor2.CNhs11951.11301-117B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor2_CNhs11951_11301-117B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11301-117B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor2_CNhs11951_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5\ urlLabel FANTOM5 Details:\ SebocyteDonor2_CNhs11951_tpm_rev SebocyteD2- bigWig Sebocyte, donor2_CNhs11951_11301-117B5_reverse 1 2816 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sebocyte%2c%20donor2.CNhs11951.11301-117B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor2_CNhs11951_11301-117B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11301-117B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor2_CNhs11951_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5\ urlLabel FANTOM5 Details:\ SebocyteDonor3_CNhs11995_ctss_fwd SebocyteD3+ bigWig Sebocyte, donor3_CNhs11995_11378-118B1_forward 0 2817 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sebocyte%2c%20donor3.CNhs11995.11378-118B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor3_CNhs11995_11378-118B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11378-118B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor3_CNhs11995_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1\ urlLabel FANTOM5 Details:\ SebocyteDonor3_CNhs11995_tpm_fwd SebocyteD3+ bigWig Sebocyte, donor3_CNhs11995_11378-118B1_forward 1 2817 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sebocyte%2c%20donor3.CNhs11995.11378-118B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor3_CNhs11995_11378-118B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11378-118B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor3_CNhs11995_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1\ urlLabel FANTOM5 Details:\ SebocyteDonor3_CNhs11995_ctss_rev SebocyteD3- bigWig Sebocyte, donor3_CNhs11995_11378-118B1_reverse 0 2818 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sebocyte%2c%20donor3.CNhs11995.11378-118B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor3_CNhs11995_11378-118B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11378-118B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor3_CNhs11995_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1\ urlLabel FANTOM5 Details:\ SebocyteDonor3_CNhs11995_tpm_rev SebocyteD3- bigWig Sebocyte, donor3_CNhs11995_11378-118B1_reverse 1 2818 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sebocyte%2c%20donor3.CNhs11995.11378-118B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor3_CNhs11995_11378-118B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11378-118B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor3_CNhs11995_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1\ urlLabel FANTOM5 Details:\ SertoliCellsDonor1_CNhs10851_ctss_fwd SertoliCellsD1+ bigWig Sertoli Cells, donor1_CNhs10851_11255-116F4_forward 0 2819 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sertoli%20Cells%2c%20donor1.CNhs10851.11255-116F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Sertoli Cells, donor1_CNhs10851_11255-116F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11255-116F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SertoliCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SertoliCellsDonor1_CNhs10851_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4\ urlLabel FANTOM5 Details:\ SertoliCellsDonor1_CNhs10851_tpm_fwd SertoliCellsD1+ bigWig Sertoli Cells, donor1_CNhs10851_11255-116F4_forward 1 2819 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sertoli%20Cells%2c%20donor1.CNhs10851.11255-116F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Sertoli Cells, donor1_CNhs10851_11255-116F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11255-116F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SertoliCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SertoliCellsDonor1_CNhs10851_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4\ urlLabel FANTOM5 Details:\ SertoliCellsDonor1_CNhs10851_ctss_rev SertoliCellsD1- bigWig Sertoli Cells, donor1_CNhs10851_11255-116F4_reverse 0 2820 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sertoli%20Cells%2c%20donor1.CNhs10851.11255-116F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Sertoli Cells, donor1_CNhs10851_11255-116F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11255-116F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SertoliCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SertoliCellsDonor1_CNhs10851_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4\ urlLabel FANTOM5 Details:\ SertoliCellsDonor1_CNhs10851_tpm_rev SertoliCellsD1- bigWig Sertoli Cells, donor1_CNhs10851_11255-116F4_reverse 1 2820 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sertoli%20Cells%2c%20donor1.CNhs10851.11255-116F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Sertoli Cells, donor1_CNhs10851_11255-116F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11255-116F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SertoliCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SertoliCellsDonor1_CNhs10851_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4\ urlLabel FANTOM5 Details:\ SertoliCellsDonor2_CNhs11974_ctss_fwd SertoliCellsD2+ bigWig Sertoli Cells, donor2_CNhs11974_11333-117F1_forward 0 2821 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11333-117F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sertoli%20Cells%2c%20donor2.CNhs11974.11333-117F1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Sertoli Cells, donor2_CNhs11974_11333-117F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11333-117F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SertoliCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SertoliCellsDonor2_CNhs11974_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11333-117F1\ urlLabel FANTOM5 Details:\ SertoliCellsDonor2_CNhs11974_tpm_fwd SertoliCellsD2+ bigWig Sertoli Cells, donor2_CNhs11974_11333-117F1_forward 1 2821 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11333-117F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sertoli%20Cells%2c%20donor2.CNhs11974.11333-117F1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Sertoli Cells, donor2_CNhs11974_11333-117F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11333-117F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SertoliCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SertoliCellsDonor2_CNhs11974_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11333-117F1\ urlLabel FANTOM5 Details:\ SertoliCellsDonor2_CNhs11974_ctss_rev SertoliCellsD2- bigWig Sertoli Cells, donor2_CNhs11974_11333-117F1_reverse 0 2822 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11333-117F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sertoli%20Cells%2c%20donor2.CNhs11974.11333-117F1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Sertoli Cells, donor2_CNhs11974_11333-117F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11333-117F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SertoliCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SertoliCellsDonor2_CNhs11974_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11333-117F1\ urlLabel FANTOM5 Details:\ SertoliCellsDonor2_CNhs11974_tpm_rev SertoliCellsD2- bigWig Sertoli Cells, donor2_CNhs11974_11333-117F1_reverse 1 2822 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11333-117F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Sertoli%20Cells%2c%20donor2.CNhs11974.11333-117F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Sertoli Cells, donor2_CNhs11974_11333-117F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11333-117F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SertoliCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SertoliCellsDonor2_CNhs11974_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11333-117F1\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor1_CNhs11083_ctss_fwd SkeletalMuscleCellsD1+ bigWig Skeletal Muscle Cells, donor1_CNhs11083_11281-116I3_forward 0 2823 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11281-116I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Skeletal%20Muscle%20Cells%2c%20donor1.CNhs11083.11281-116I3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor1_CNhs11083_11281-116I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11281-116I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor1_CNhs11083_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11281-116I3\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor1_CNhs11083_tpm_fwd SkeletalMuscleCellsD1+ bigWig Skeletal Muscle Cells, donor1_CNhs11083_11281-116I3_forward 1 2823 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11281-116I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Skeletal%20Muscle%20Cells%2c%20donor1.CNhs11083.11281-116I3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor1_CNhs11083_11281-116I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11281-116I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor1_CNhs11083_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11281-116I3\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor1_CNhs11083_ctss_rev SkeletalMuscleCellsD1- bigWig Skeletal Muscle Cells, donor1_CNhs11083_11281-116I3_reverse 0 2824 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11281-116I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Skeletal%20Muscle%20Cells%2c%20donor1.CNhs11083.11281-116I3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Cells, donor1_CNhs11083_11281-116I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11281-116I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDonor1_CNhs11083_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11281-116I3\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor1_CNhs11083_tpm_rev SkeletalMuscleCellsD1- bigWig Skeletal Muscle Cells, donor1_CNhs11083_11281-116I3_reverse 1 2824 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11281-116I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Skeletal%20Muscle%20Cells%2c%20donor1.CNhs11083.11281-116I3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Cells, donor1_CNhs11083_11281-116I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11281-116I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDonor1_CNhs11083_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11281-116I3\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor2_CNhs11983_ctss_fwd SkeletalMuscleCellsD2+ bigWig Skeletal Muscle Cells, donor2_CNhs11983_11358-117H8_forward 0 2825 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Skeletal%20Muscle%20Cells%2c%20donor2.CNhs11983.11358-117H8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor2_CNhs11983_11358-117H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11358-117H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor2_CNhs11983_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor2_CNhs11983_tpm_fwd SkeletalMuscleCellsD2+ bigWig Skeletal Muscle Cells, donor2_CNhs11983_11358-117H8_forward 1 2825 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Skeletal%20Muscle%20Cells%2c%20donor2.CNhs11983.11358-117H8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor2_CNhs11983_11358-117H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11358-117H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor2_CNhs11983_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8\ urlLabel FANTOM5 Details:\ 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SkeletalMuscleCellsDonor5_CNhs12056_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11455-119A6\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor6_CNhs12060_ctss_fwd SkeletalMuscleCellsD6+ bigWig Skeletal Muscle Cells, donor6_CNhs12060_11459-119B1_forward 0 2833 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11459-119B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Skeletal%20Muscle%20Cells%2c%20donor6.CNhs12060.11459-119B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor6_CNhs12060_11459-119B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11459-119B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor6_CNhs12060_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11459-119B1\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor6_CNhs12060_tpm_fwd SkeletalMuscleCellsD6+ bigWig Skeletal Muscle Cells, donor6_CNhs12060_11459-119B1_forward 1 2833 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11459-119B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Skeletal%20Muscle%20Cells%2c%20donor6.CNhs12060.11459-119B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor6_CNhs12060_11459-119B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11459-119B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor6_CNhs12060_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11459-119B1\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor6_CNhs12060_ctss_rev SkeletalMuscleCellsD6- bigWig Skeletal Muscle Cells, donor6_CNhs12060_11459-119B1_reverse 0 2834 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11459-119B1 regulation 0 bigDataUrl 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SkeletalMuscleSatelliteCellsDonor2_CNhs11964_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11321-117D7\ urlLabel FANTOM5 Details:\ SkeletalMuscleSatelliteCellsDonor2_CNhs11964_tpm_rev SkeletalMuscleSatelliteCellsD2- bigWig Skeletal Muscle Satellite Cells, donor2_CNhs11964_11321-117D7_reverse 1 2844 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11321-117D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Skeletal%20Muscle%20Satellite%20Cells%2c%20donor2.CNhs11964.11321-117D7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Satellite Cells, donor2_CNhs11964_11321-117D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11321-117D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleSatelliteCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleSatelliteCellsDonor2_CNhs11964_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11321-117D7\ urlLabel FANTOM5 Details:\ 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FANTOM5 Details:\ SmoothMuscleCellsCarotidDonor2_CNhs11986_tpm_fwd SmcCarotidD2+ bigWig Smooth Muscle Cells - Carotid, donor2_CNhs11986_11362-117I3_forward 1 2901 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11362-117I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Smooth%20Muscle%20Cells%20-%20Carotid%2c%20donor2.CNhs11986.11362-117I3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Carotid, donor2_CNhs11986_11362-117I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11362-117I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcCarotidD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsCarotidDonor2_CNhs11986_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11362-117I3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsCarotidDonor2_CNhs11986_ctss_rev SmcCarotidD2- bigWig Smooth Muscle Cells - Carotid, donor2_CNhs11986_11362-117I3_reverse 0 2902 0 0 255 127 127 255 0 0 0 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sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsColonicDonor1_CNhs10868_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11239-116D6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsColonicDonor1_CNhs10868_tpm_rev SmcColonicD1- bigWig Smooth Muscle Cells - Colonic, donor1_CNhs10868_11239-116D6_reverse 1 2906 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11239-116D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Smooth%20Muscle%20Cells%20-%20Colonic%2c%20donor1.CNhs10868.11239-116D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Colonic, donor1_CNhs10868_11239-116D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11239-116D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcColonicD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsColonicDonor1_CNhs10868_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11239-116D6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsColonicDonor2_CNhs11963_ctss_fwd SmcColonicD2+ bigWig Smooth Muscle Cells - Colonic, donor2_CNhs11963_11320-117D6_forward 0 2907 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11320-117D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Smooth%20Muscle%20Cells%20-%20Colonic%2c%20donor2.CNhs11963.11320-117D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Colonic, donor2_CNhs11963_11320-117D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11320-117D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcColonicD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsColonicDonor2_CNhs11963_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11320-117D6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsColonicDonor2_CNhs11963_tpm_fwd SmcColonicD2+ bigWig Smooth Muscle Cells - Colonic, donor2_CNhs11963_11320-117D6_forward 1 2907 255 0 0 255 127 127 0 0 0 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shortLabel SmcColonicD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsColonicDonor2_CNhs11963_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11320-117D6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsColonicDonor3_CNhs12007_ctss_fwd SmcColonicD3+ bigWig Smooth Muscle Cells - Colonic, donor3_CNhs12007_11396-118D1_forward 0 2909 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11396-118D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Smooth%20Muscle%20Cells%20-%20Colonic%2c%20donor3.CNhs12007.11396-118D1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Colonic, donor3_CNhs12007_11396-118D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11396-118D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcColonicD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsColonicDonor3_CNhs12007_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11396-118D1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsColonicDonor3_CNhs12007_tpm_fwd SmcColonicD3+ bigWig Smooth Muscle Cells - Colonic, donor3_CNhs12007_11396-118D1_forward 1 2909 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11396-118D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Smooth%20Muscle%20Cells%20-%20Colonic%2c%20donor3.CNhs12007.11396-118D1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Colonic, donor3_CNhs12007_11396-118D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11396-118D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcColonicD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsColonicDonor3_CNhs12007_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11396-118D1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsColonicDonor3_CNhs12007_ctss_rev SmcColonicD3- bigWig Smooth Muscle Cells - Colonic, donor3_CNhs12007_11396-118D1_reverse 0 2910 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11396-118D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Smooth%20Muscle%20Cells%20-%20Colonic%2c%20donor3.CNhs12007.11396-118D1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Colonic, donor3_CNhs12007_11396-118D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11396-118D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcColonicD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsColonicDonor3_CNhs12007_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11396-118D1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsColonicDonor3_CNhs12007_tpm_rev SmcColonicD3- bigWig Smooth Muscle Cells - Colonic, donor3_CNhs12007_11396-118D1_reverse 1 2910 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11396-118D1 regulation 0 bigDataUrl 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http://fantom.gsc.riken.jp/5/sstar/FF:11509-119G6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsProstateDonor1_CNhs11920_ctss_fwd SmcProstateD1+ bigWig Smooth Muscle Cells - Prostate, donor1_CNhs11920_11257-116F6_forward 0 2929 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11257-116F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor1.CNhs11920.11257-116F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Prostate, donor1_CNhs11920_11257-116F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11257-116F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcProstateD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsProstateDonor1_CNhs11920_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11257-116F6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsProstateDonor1_CNhs11920_tpm_fwd SmcProstateD1+ bigWig Smooth Muscle Cells - Prostate, donor1_CNhs11920_11257-116F6_forward 1 2929 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11257-116F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor1.CNhs11920.11257-116F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Prostate, donor1_CNhs11920_11257-116F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11257-116F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcProstateD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsProstateDonor1_CNhs11920_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11257-116F6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsProstateDonor1_CNhs11920_ctss_rev SmcProstateD1- bigWig Smooth Muscle Cells - Prostate, donor1_CNhs11920_11257-116F6_reverse 0 2930 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11257-116F6 regulation 0 bigDataUrl 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donor1_CNhs11920_11257-116F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11257-116F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcProstateD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsProstateDonor1_CNhs11920_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11257-116F6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsProstateDonor2_CNhs11976_ctss_fwd SmcProstateD2+ bigWig Smooth Muscle Cells - Prostate, donor2_CNhs11976_11335-117F3_forward 0 2931 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11335-117F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor2.CNhs11976.11335-117F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Prostate, donor2_CNhs11976_11335-117F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11335-117F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcProstateD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsProstateDonor2_CNhs11976_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11335-117F3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsProstateDonor2_CNhs11976_tpm_fwd SmcProstateD2+ bigWig Smooth Muscle Cells - Prostate, donor2_CNhs11976_11335-117F3_forward 1 2931 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11335-117F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor2.CNhs11976.11335-117F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Prostate, donor2_CNhs11976_11335-117F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11335-117F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcProstateD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsProstateDonor2_CNhs11976_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11335-117F3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsProstateDonor2_CNhs11976_ctss_rev SmcProstateD2- bigWig Smooth Muscle Cells - Prostate, donor2_CNhs11976_11335-117F3_reverse 0 2932 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11335-117F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor2.CNhs11976.11335-117F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Prostate, donor2_CNhs11976_11335-117F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11335-117F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcProstateD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsProstateDonor2_CNhs11976_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11335-117F3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsProstateDonor2_CNhs11976_tpm_rev SmcProstateD2- bigWig Smooth Muscle Cells - Prostate, donor2_CNhs11976_11335-117F3_reverse 1 2932 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11335-117F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor2.CNhs11976.11335-117F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Prostate, donor2_CNhs11976_11335-117F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11335-117F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcProstateD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsProstateDonor2_CNhs11976_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11335-117F3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsProstateDonor3_CNhs11910_ctss_fwd SmcProstateD3+ bigWig Smooth Muscle Cells - Prostate, donor3_CNhs11910_11465-119B7_forward 0 2933 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11465-119B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor3.CNhs11910.11465-119B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Prostate, donor3_CNhs11910_11465-119B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11465-119B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcProstateD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsProstateDonor3_CNhs11910_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11465-119B7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsProstateDonor3_CNhs11910_tpm_fwd SmcProstateD3+ bigWig Smooth Muscle Cells - Prostate, donor3_CNhs11910_11465-119B7_forward 1 2933 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11465-119B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor3.CNhs11910.11465-119B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Prostate, donor3_CNhs11910_11465-119B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11465-119B7 sequence_tech=hCAGE\ parent 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url http://fantom.gsc.riken.jp/5/sstar/FF:11465-119B7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsProstateDonor3_CNhs11910_tpm_rev SmcProstateD3- bigWig Smooth Muscle Cells - Prostate, donor3_CNhs11910_11465-119B7_reverse 1 2934 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11465-119B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor3.CNhs11910.11465-119B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Prostate, donor3_CNhs11910_11465-119B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11465-119B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcProstateD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsProstateDonor3_CNhs11910_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11465-119B7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsPulmonaryArteryDonor1_CNhs11089_ctss_fwd SmcPulmonaryArteryD1+ bigWig Smooth Muscle Cells - 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Details:\ SynoviocyteDonor1_CNhs11068_ctss_fwd SynoviocyteD1+ bigWig Synoviocyte, donor1_CNhs11068_11291-117A4_forward 0 2971 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Synoviocyte%2c%20donor1.CNhs11068.11291-117A4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Synoviocyte, donor1_CNhs11068_11291-117A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11291-117A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SynoviocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SynoviocyteDonor1_CNhs11068_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4\ urlLabel FANTOM5 Details:\ SynoviocyteDonor1_CNhs11068_tpm_fwd SynoviocyteD1+ bigWig Synoviocyte, donor1_CNhs11068_11291-117A4_forward 1 2971 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4 regulation 0 bigDataUrl 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Synoviocyte, donor2_CNhs11992_11368-117I9_forward 0 2973 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Synoviocyte%2c%20donor2.CNhs11992.11368-117I9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Synoviocyte, donor2_CNhs11992_11368-117I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11368-117I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SynoviocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SynoviocyteDonor2_CNhs11992_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor2_CNhs11992_tpm_fwd SynoviocyteD2+ bigWig Synoviocyte, donor2_CNhs11992_11368-117I9_forward 1 2973 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Synoviocyte%2c%20donor2.CNhs11992.11368-117I9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Synoviocyte, donor2_CNhs11992_11368-117I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11368-117I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SynoviocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SynoviocyteDonor2_CNhs11992_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor2_CNhs11992_ctss_rev SynoviocyteD2- bigWig Synoviocyte, donor2_CNhs11992_11368-117I9_reverse 0 2974 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Synoviocyte%2c%20donor2.CNhs11992.11368-117I9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Synoviocyte, donor2_CNhs11992_11368-117I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11368-117I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SynoviocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SynoviocyteDonor2_CNhs11992_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor2_CNhs11992_tpm_rev SynoviocyteD2- bigWig Synoviocyte, donor2_CNhs11992_11368-117I9_reverse 1 2974 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Synoviocyte%2c%20donor2.CNhs11992.11368-117I9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Synoviocyte, donor2_CNhs11992_11368-117I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11368-117I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SynoviocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SynoviocyteDonor2_CNhs11992_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor3_CNhs12050_ctss_fwd SynoviocyteD3+ bigWig Synoviocyte, donor3_CNhs12050_11440-118H9_forward 0 2975 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Synoviocyte%2c%20donor3.CNhs12050.11440-118H9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Synoviocyte, donor3_CNhs12050_11440-118H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11440-118H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SynoviocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SynoviocyteDonor3_CNhs12050_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor3_CNhs12050_tpm_fwd SynoviocyteD3+ bigWig Synoviocyte, donor3_CNhs12050_11440-118H9_forward 1 2975 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Synoviocyte%2c%20donor3.CNhs12050.11440-118H9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Synoviocyte, donor3_CNhs12050_11440-118H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11440-118H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SynoviocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SynoviocyteDonor3_CNhs12050_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor3_CNhs12050_ctss_rev SynoviocyteD3- bigWig Synoviocyte, donor3_CNhs12050_11440-118H9_reverse 0 2976 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Synoviocyte%2c%20donor3.CNhs12050.11440-118H9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Synoviocyte, donor3_CNhs12050_11440-118H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11440-118H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SynoviocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SynoviocyteDonor3_CNhs12050_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor3_CNhs12050_tpm_rev SynoviocyteD3- bigWig Synoviocyte, donor3_CNhs12050_11440-118H9_reverse 1 2976 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Synoviocyte%2c%20donor3.CNhs12050.11440-118H9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Synoviocyte, donor3_CNhs12050_11440-118H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11440-118H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SynoviocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SynoviocyteDonor3_CNhs12050_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9\ urlLabel FANTOM5 Details:\ TenocyteDonor1_CNhs12639_ctss_fwd TenocyteD1+ bigWig tenocyte, donor1_CNhs12639_11763-123H8_forward 0 2977 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tenocyte%2c%20donor1.CNhs12639.11763-123H8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor1_CNhs12639_11763-123H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11763-123H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor1_CNhs12639_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8\ urlLabel FANTOM5 Details:\ TenocyteDonor1_CNhs12639_tpm_fwd TenocyteD1+ bigWig tenocyte, donor1_CNhs12639_11763-123H8_forward 1 2977 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tenocyte%2c%20donor1.CNhs12639.11763-123H8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor1_CNhs12639_11763-123H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11763-123H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor1_CNhs12639_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8\ urlLabel FANTOM5 Details:\ TenocyteDonor1_CNhs12639_ctss_rev TenocyteD1- bigWig tenocyte, donor1_CNhs12639_11763-123H8_reverse 0 2978 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tenocyte%2c%20donor1.CNhs12639.11763-123H8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel tenocyte, donor1_CNhs12639_11763-123H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11763-123H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor1_CNhs12639_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8\ urlLabel FANTOM5 Details:\ TenocyteDonor1_CNhs12639_tpm_rev TenocyteD1- bigWig tenocyte, donor1_CNhs12639_11763-123H8_reverse 1 2978 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tenocyte%2c%20donor1.CNhs12639.11763-123H8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel tenocyte, donor1_CNhs12639_11763-123H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11763-123H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor1_CNhs12639_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8\ urlLabel FANTOM5 Details:\ TenocyteDonor2_CNhs12640_ctss_fwd TenocyteD2+ bigWig tenocyte, donor2_CNhs12640_11765-123I1_forward 0 2979 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tenocyte%2c%20donor2.CNhs12640.11765-123I1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor2_CNhs12640_11765-123I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11765-123I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor2_CNhs12640_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1\ urlLabel FANTOM5 Details:\ TenocyteDonor2_CNhs12640_tpm_fwd TenocyteD2+ bigWig tenocyte, donor2_CNhs12640_11765-123I1_forward 1 2979 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tenocyte%2c%20donor2.CNhs12640.11765-123I1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor2_CNhs12640_11765-123I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11765-123I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor2_CNhs12640_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1\ urlLabel FANTOM5 Details:\ TenocyteDonor2_CNhs12640_ctss_rev TenocyteD2- bigWig tenocyte, donor2_CNhs12640_11765-123I1_reverse 0 2980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tenocyte%2c%20donor2.CNhs12640.11765-123I1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel tenocyte, donor2_CNhs12640_11765-123I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11765-123I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor2_CNhs12640_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1\ urlLabel FANTOM5 Details:\ TenocyteDonor2_CNhs12640_tpm_rev TenocyteD2- bigWig tenocyte, donor2_CNhs12640_11765-123I1_reverse 1 2980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tenocyte%2c%20donor2.CNhs12640.11765-123I1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel tenocyte, donor2_CNhs12640_11765-123I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11765-123I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor2_CNhs12640_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1\ urlLabel FANTOM5 Details:\ TenocyteDonor3_CNhs12641_ctss_fwd TenocyteD3+ bigWig tenocyte, donor3_CNhs12641_11768-123I4_forward 0 2981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tenocyte%2c%20donor3.CNhs12641.11768-123I4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor3_CNhs12641_11768-123I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11768-123I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor3_CNhs12641_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4\ urlLabel FANTOM5 Details:\ TenocyteDonor3_CNhs12641_tpm_fwd TenocyteD3+ bigWig tenocyte, donor3_CNhs12641_11768-123I4_forward 1 2981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tenocyte%2c%20donor3.CNhs12641.11768-123I4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor3_CNhs12641_11768-123I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11768-123I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor3_CNhs12641_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4\ urlLabel FANTOM5 Details:\ TenocyteDonor3_CNhs12641_ctss_rev TenocyteD3- bigWig tenocyte, donor3_CNhs12641_11768-123I4_reverse 0 2982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tenocyte%2c%20donor3.CNhs12641.11768-123I4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel tenocyte, donor3_CNhs12641_11768-123I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11768-123I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor3_CNhs12641_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4\ urlLabel FANTOM5 Details:\ TenocyteDonor3_CNhs12641_tpm_rev TenocyteD3- bigWig tenocyte, donor3_CNhs12641_11768-123I4_reverse 1 2982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tenocyte%2c%20donor3.CNhs12641.11768-123I4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel tenocyte, donor3_CNhs12641_11768-123I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11768-123I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor3_CNhs12641_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor1_CNhs11340_ctss_fwd TrabecularMeshworkCellsD1+ bigWig Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_forward 0 2983 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor1.CNhs11340.11532-120A2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11532-120A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrabecularMeshworkCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor1_CNhs11340_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor1_CNhs11340_tpm_fwd TrabecularMeshworkCellsD1+ bigWig Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_forward 1 2983 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor1.CNhs11340.11532-120A2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11532-120A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrabecularMeshworkCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor1_CNhs11340_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor1_CNhs11340_ctss_rev TrabecularMeshworkCellsD1- bigWig Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_reverse 0 2984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor1.CNhs11340.11532-120A2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11532-120A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrabecularMeshworkCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrabecularMeshworkCellsDonor1_CNhs11340_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor1_CNhs11340_tpm_rev TrabecularMeshworkCellsD1- bigWig Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_reverse 1 2984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor1.CNhs11340.11532-120A2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11532-120A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrabecularMeshworkCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrabecularMeshworkCellsDonor1_CNhs11340_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor2_CNhs12097_ctss_fwd TrabecularMeshworkCellsD2+ bigWig Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_forward 0 2985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor2.CNhs12097.11612-122A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11612-122A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrabecularMeshworkCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor2_CNhs12097_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor2_CNhs12097_tpm_fwd TrabecularMeshworkCellsD2+ bigWig Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_forward 1 2985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor2.CNhs12097.11612-122A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11612-122A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrabecularMeshworkCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor2_CNhs12097_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor2_CNhs12097_ctss_rev TrabecularMeshworkCellsD2- bigWig Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_reverse 0 2986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor2.CNhs12097.11612-122A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11612-122A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrabecularMeshworkCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrabecularMeshworkCellsDonor2_CNhs12097_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor2_CNhs12097_tpm_rev TrabecularMeshworkCellsD2- bigWig Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_reverse 1 2986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor2.CNhs12097.11612-122A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11612-122A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrabecularMeshworkCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrabecularMeshworkCellsDonor2_CNhs12097_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor3_CNhs12124_ctss_fwd TrabecularMeshworkCellsD3+ bigWig Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_forward 0 2987 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor3.CNhs12124.11693-123A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11693-123A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrabecularMeshworkCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor3_CNhs12124_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor3_CNhs12124_tpm_fwd TrabecularMeshworkCellsD3+ bigWig Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_forward 1 2987 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor3.CNhs12124.11693-123A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11693-123A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrabecularMeshworkCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor3_CNhs12124_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor3_CNhs12124_ctss_rev TrabecularMeshworkCellsD3- bigWig Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_reverse 0 2988 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor3.CNhs12124.11693-123A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11693-123A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrabecularMeshworkCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrabecularMeshworkCellsDonor3_CNhs12124_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor3_CNhs12124_tpm_rev TrabecularMeshworkCellsD3- bigWig Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_reverse 1 2988 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor3.CNhs12124.11693-123A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11693-123A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrabecularMeshworkCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrabecularMeshworkCellsDonor3_CNhs12124_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1\ urlLabel FANTOM5 Details:\ TrachealEpithelialCellsDonor1_CNhs11092_ctss_fwd TrachealEpithelialCellsD1+ bigWig Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_forward 0 2989 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor1.CNhs11092.11292-117A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11292-117A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrachealEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrachealEpithelialCellsDonor1_CNhs11092_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5\ urlLabel FANTOM5 Details:\ TrachealEpithelialCellsDonor1_CNhs11092_tpm_fwd TrachealEpithelialCellsD1+ bigWig Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_forward 1 2989 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor1.CNhs11092.11292-117A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11292-117A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrachealEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrachealEpithelialCellsDonor1_CNhs11092_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5\ urlLabel FANTOM5 Details:\ TrachealEpithelialCellsDonor1_CNhs11092_ctss_rev TrachealEpithelialCellsD1- bigWig Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_reverse 0 2990 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5 regulation 0 bigDataUrl 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/gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep3%20%28LK3%29.CNhs13567.12838-137B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12838-137B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_tpm_fwd AorticSmsToFgf2_00hr00minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_forward 1 3021 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3 regulation 0 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bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep3%20%28LK3%29.CNhs13567.12838-137B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12838-137B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_tpm_rev AorticSmsToFgf2_00hr00minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_reverse 1 3022 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep3%20%28LK3%29.CNhs13567.12838-137B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12838-137B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_ctss_fwd AorticSmsToFgf2_01hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_forward 0 3023 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep2%20%28LK14%29.CNhs13362.12744-135I8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12744-135I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_01hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_tpm_fwd AorticSmsToFgf2_01hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_forward 1 3023 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep2%20%28LK14%29.CNhs13362.12744-135I8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12744-135I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_01hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_ctss_rev AorticSmsToFgf2_01hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_reverse 0 3024 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep2%20%28LK14%29.CNhs13362.12744-135I8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12744-135I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_01hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_tpm_rev AorticSmsToFgf2_01hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_reverse 1 3024 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep2%20%28LK14%29.CNhs13362.12744-135I8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12744-135I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_01hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_ctss_fwd AorticSmsToFgf2_04hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_forward 0 3025 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep1%20%28LK22%29.CNhs13346.12649-134H3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12649-134H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_tpm_fwd AorticSmsToFgf2_04hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_forward 1 3025 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep1%20%28LK22%29.CNhs13346.12649-134H3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12649-134H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_ctss_rev AorticSmsToFgf2_04hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_reverse 0 3026 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep1%20%28LK22%29.CNhs13346.12649-134H3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12649-134H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_tpm_rev AorticSmsToFgf2_04hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_reverse 1 3026 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep1%20%28LK22%29.CNhs13346.12649-134H3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12649-134H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_ctss_fwd AorticSmsToFgf2_04hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_forward 0 3027 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep2%20%28LK23%29.CNhs13365.12747-136A2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12747-136A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_tpm_fwd AorticSmsToFgf2_04hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_forward 1 3027 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep2%20%28LK23%29.CNhs13365.12747-136A2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12747-136A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_ctss_rev AorticSmsToFgf2_04hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_reverse 0 3028 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep2%20%28LK23%29.CNhs13365.12747-136A2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12747-136A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_tpm_rev AorticSmsToFgf2_04hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_reverse 1 3028 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep2%20%28LK23%29.CNhs13365.12747-136A2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12747-136A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_ctss_fwd AorticSmsToFgf2_04hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_forward 0 3029 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep3%20%28LK24%29.CNhs13574.12845-137C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12845-137C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_tpm_fwd AorticSmsToFgf2_04hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_forward 1 3029 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep3%20%28LK24%29.CNhs13574.12845-137C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12845-137C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_ctss_rev AorticSmsToFgf2_04hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_reverse 0 3030 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep3%20%28LK24%29.CNhs13574.12845-137C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12845-137C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_tpm_rev AorticSmsToFgf2_04hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_reverse 1 3030 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep3%20%28LK24%29.CNhs13574.12845-137C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12845-137C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_ctss_fwd AorticSmsToIL1b_01hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_forward 0 3031 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep3%20%28LK45%29.CNhs13581.12852-137C8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12852-137C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_tpm_fwd AorticSmsToIL1b_01hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_forward 1 3031 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep3%20%28LK45%29.CNhs13581.12852-137C8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12852-137C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_ctss_rev AorticSmsToIL1b_01hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_reverse 0 3032 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep3%20%28LK45%29.CNhs13581.12852-137C8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12852-137C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_tpm_rev AorticSmsToIL1b_01hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_reverse 1 3032 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep3%20%28LK45%29.CNhs13581.12852-137C8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12852-137C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_ctss_fwd AorticSmsToIL1b_02hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_forward 0 3033 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep1%20%28LK46%29.CNhs13354.12657-134I2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12657-134I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_tpm_fwd AorticSmsToIL1b_02hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_forward 1 3033 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep1%20%28LK46%29.CNhs13354.12657-134I2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12657-134I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_ctss_rev AorticSmsToIL1b_02hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_reverse 0 3034 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep1%20%28LK46%29.CNhs13354.12657-134I2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12657-134I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_tpm_rev AorticSmsToIL1b_02hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_reverse 1 3034 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep1%20%28LK46%29.CNhs13354.12657-134I2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12657-134I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_ctss_fwd AorticSmsToIL1b_03hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_forward 0 3035 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep3%20%28LK51%29.CNhs13583.12854-137D1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12854-137D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_tpm_fwd AorticSmsToIL1b_03hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_forward 1 3035 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep3%20%28LK51%29.CNhs13583.12854-137D1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12854-137D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_ctss_rev AorticSmsToIL1b_03hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_reverse 0 3036 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep3%20%28LK51%29.CNhs13583.12854-137D1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12854-137D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_tpm_rev AorticSmsToIL1b_03hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_reverse 1 3036 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep3%20%28LK51%29.CNhs13583.12854-137D1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12854-137D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_ctss_fwd AorticSmsToIL1b_05hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_forward 0 3037 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep3%20%28LK57%29.CNhs13585.12856-137D3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12856-137D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_tpm_fwd AorticSmsToIL1b_05hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_forward 1 3037 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep3%20%28LK57%29.CNhs13585.12856-137D3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12856-137D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_ctss_rev AorticSmsToIL1b_05hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_reverse 0 3038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep3%20%28LK57%29.CNhs13585.12856-137D3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12856-137D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_tpm_rev AorticSmsToIL1b_05hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_reverse 1 3038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep3%20%28LK57%29.CNhs13585.12856-137D3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12856-137D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_ctss_fwd H9EmbryonicStemCellsBr1+ bigWig H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_forward 0 3039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep1%20%28H9ES-1%29.CNhs11917.12626-134E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12626-134E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9EmbryonicStemCellsBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_tpm_fwd H9EmbryonicStemCellsBr1+ bigWig H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_forward 1 3039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep1%20%28H9ES-1%29.CNhs11917.12626-134E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12626-134E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9EmbryonicStemCellsBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_ctss_rev H9EmbryonicStemCellsBr1- bigWig H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_reverse 0 3040 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep1%20%28H9ES-1%29.CNhs11917.12626-134E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12626-134E7 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urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_tpm_fwd H9EmbryonicStemCellsBr2+ bigWig H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_forward 1 3041 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep2%20%28H9ES-2%29.CNhs12824.12724-135G6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12724-135G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9EmbryonicStemCellsBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_ctss_rev H9EmbryonicStemCellsBr2- bigWig H9 Embryonic Stem cells, biol_rep2 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FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day07Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_forward 0 3045 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13334-143C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep1.CNhs13659.13334-143C4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13334-143C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_ctss_fwd\ type bigWig\ url 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http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4\ urlLabel FANTOM5 Details:\ MelanocyteDonor1MC1_CNhs12816_tpm_fwd MelanocyteD1+ bigWig Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_forward 1 3047 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Melanocyte%2c%20donor1%20%28MC%2b1%29.CNhs12816.12641-134G4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12641-134G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MelanocyteDonor1MC1_CNhs12816_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4\ urlLabel FANTOM5 Details:\ MelanocyteDonor1MC1_CNhs12816_ctss_rev MelanocyteD1- bigWig Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_reverse 0 3048 0 0 255 127 127 255 0 0 0 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MscAdipogenicInduction_02hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep3_CNhs13605_13252-142C3_forward 1 3065 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13252-142C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep3.CNhs13605.13252-142C3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep3_CNhs13605_13252-142C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13252-142C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep3_CNhs13605_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13252-142C3\ urlLabel FANTOM5 Details:\ 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MscAdipogenicInduction_03hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep2_CNhs13610_13257-142C8_reverse 1 3070 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13257-142C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep2.CNhs13610.13257-142C8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep2_CNhs13610_13257-142C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13257-142C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep2_CNhs13610_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13257-142C8\ urlLabel FANTOM5 Details:\ 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MscAdipogenicInduction_12hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep3_CNhs13614_13261-142D3_forward 1 3075 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13261-142D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2012hr00min%2c%20biol_rep3.CNhs13614.13261-142D3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep3_CNhs13614_13261-142D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13261-142D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_12hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep3_CNhs13614_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13261-142D3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep3_CNhs13614_ctss_rev MscAdipogenicInduction_12hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep3_CNhs13614_13261-142D3_reverse 0 3076 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13261-142D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2012hr00min%2c%20biol_rep3.CNhs13614.13261-142D3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep3_CNhs13614_13261-142D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13261-142D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_12hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep3_CNhs13614_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13261-142D3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep3_CNhs13614_tpm_rev MscAdipogenicInduction_12hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep3_CNhs13614_13261-142D3_reverse 1 3076 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13261-142D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2012hr00min%2c%20biol_rep3.CNhs13614.13261-142D3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep3_CNhs13614_13261-142D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13261-142D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_12hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep3_CNhs13614_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13261-142D3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep1_CNhs13615_ctss_fwd MscAdipogenicInduction_Day01Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_forward 0 3077 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep1.CNhs13615.13262-142D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13262-142D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day01Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep1_CNhs13615_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep1_CNhs13615_tpm_fwd MscAdipogenicInduction_Day01Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_forward 1 3077 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep1.CNhs13615.13262-142D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13262-142D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day01Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep1_CNhs13615_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep1_CNhs13615_ctss_rev MscAdipogenicInduction_Day01Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_reverse 0 3078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep1.CNhs13615.13262-142D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13262-142D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day01Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep1_CNhs13615_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep1_CNhs13615_tpm_rev MscAdipogenicInduction_Day01Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_reverse 1 3078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep1.CNhs13615.13262-142D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13262-142D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day01Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep1_CNhs13615_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_ctss_fwd MscAdipogenicInduction_Day04Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_forward 0 3079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep2.CNhs13623.13269-142E2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13269-142E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_tpm_fwd MscAdipogenicInduction_Day04Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_forward 1 3079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep2.CNhs13623.13269-142E2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13269-142E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_ctss_rev MscAdipogenicInduction_Day04Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_reverse 0 3080 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep2.CNhs13623.13269-142E2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13269-142E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_tpm_rev MscAdipogenicInduction_Day04Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_reverse 1 3080 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep2.CNhs13623.13269-142E2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13269-142E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_ctss_fwd MscAdipogenicInduction_Day14Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_forward 0 3081 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep2.CNhs13631.13278-142F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13278-142F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day14Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_tpm_fwd MscAdipogenicInduction_Day14Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_forward 1 3081 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep2.CNhs13631.13278-142F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13278-142F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day14Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_ctss_rev MscAdipogenicInduction_Day14Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_reverse 0 3082 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep2.CNhs13631.13278-142F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13278-142F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day14Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_tpm_rev MscAdipogenicInduction_Day14Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_reverse 1 3082 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep2.CNhs13631.13278-142F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13278-142F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day14Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_ctss_fwd MyoblastToMyotubes_Day01D2+ bigWig Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_forward 0 3083 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor2.CNhs14568.13479-145A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13479-145A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_tpm_fwd MyoblastToMyotubes_Day01D2+ bigWig Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_forward 1 3083 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor2.CNhs14568.13479-145A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13479-145A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_ctss_rev MyoblastToMyotubes_Day01D2- bigWig Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_reverse 0 3084 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor2.CNhs14568.13479-145A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13479-145A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_tpm_rev MyoblastToMyotubes_Day01D2- bigWig Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_reverse 1 3084 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor2.CNhs14568.13479-145A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13479-145A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track 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category=timecourse strand=forward\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_tpm_fwd MyoblastToMyotubes_Day06D2+ bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_forward 1 3085 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14601.13510-145D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13510-145D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel 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parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_tpm_rev MyoblastToMyotubes_Day06D2- bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_reverse 1 3086 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14601.13510-145D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13510-145D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_ctss_fwd MyoblastToMyotubes_Day10D3+ bigWig Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_forward 0 3087 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor3.CNhs14584.13494-145C2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13494-145C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_tpm_fwd MyoblastToMyotubes_Day10D3+ bigWig Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_forward 1 3087 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor3.CNhs14584.13494-145C2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13494-145C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_ctss_rev MyoblastToMyotubes_Day10D3- bigWig Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_reverse 0 3088 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor3.CNhs14584.13494-145C2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13494-145C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_tpm_rev MyoblastToMyotubes_Day10D3- bigWig Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_reverse 1 3088 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor3.CNhs14584.13494-145C2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13494-145C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep2_CNhs14520_ctss_fwd Tc:ARPE-19Emt_06hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2_CNhs14520_13665-147D2_forward 0 3089 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13665-147D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep2.CNhs14520.13665-147D2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2_CNhs14520_13665-147D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13665-147D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_06hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep2_CNhs14520_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13665-147D2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep2_CNhs14520_tpm_fwd Tc:ARPE-19Emt_06hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2_CNhs14520_13665-147D2_forward 1 3089 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13665-147D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep2.CNhs14520.13665-147D2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2_CNhs14520_13665-147D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13665-147D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_06hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep2_CNhs14520_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13665-147D2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep2_CNhs14520_ctss_rev Tc:ARPE-19Emt_06hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2_CNhs14520_13665-147D2_reverse 0 3090 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13665-147D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep2.CNhs14520.13665-147D2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2_CNhs14520_13665-147D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13665-147D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_06hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep2_CNhs14520_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13665-147D2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep2_CNhs14520_tpm_rev Tc:ARPE-19Emt_06hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2_CNhs14520_13665-147D2_reverse 1 3090 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13665-147D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep2.CNhs14520.13665-147D2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2_CNhs14520_13665-147D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13665-147D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_06hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep2_CNhs14520_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13665-147D2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep2_CNhs14536_ctss_fwd Tc:ARPE-19Emt_24hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep2_CNhs14536_13680-147E8_forward 0 3091 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13680-147E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep2.CNhs14536.13680-147E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep2_CNhs14536_13680-147E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13680-147E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_24hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep2_CNhs14536_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13680-147E8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep2_CNhs14536_tpm_fwd Tc:ARPE-19Emt_24hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep2_CNhs14536_13680-147E8_forward 1 3091 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13680-147E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep2.CNhs14536.13680-147E8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep2_CNhs14536_13680-147E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13680-147E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_24hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep2_CNhs14536_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13680-147E8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep2_CNhs14536_ctss_rev Tc:ARPE-19Emt_24hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep2_CNhs14536_13680-147E8_reverse 0 3092 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13680-147E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep2.CNhs14536.13680-147E8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep2_CNhs14536_13680-147E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13680-147E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_24hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep2_CNhs14536_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13680-147E8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep2_CNhs14536_tpm_rev Tc:ARPE-19Emt_24hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep2_CNhs14536_13680-147E8_reverse 1 3092 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13680-147E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep2.CNhs14536.13680-147E8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep2_CNhs14536_13680-147E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13680-147E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_24hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep2_CNhs14536_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13680-147E8\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep1_CNhs14067_ctss_fwd Tc:H1ToHsc_Day00Br1+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep1_CNhs14067_13523-145F4_forward 0 3093 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13523-145F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day00%2c%20biol_rep1.CNhs14067.13523-145F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep1_CNhs14067_13523-145F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13523-145F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day00Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep1_CNhs14067_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13523-145F4\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep1_CNhs14067_tpm_fwd Tc:H1ToHsc_Day00Br1+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep1_CNhs14067_13523-145F4_forward 1 3093 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13523-145F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day00%2c%20biol_rep1.CNhs14067.13523-145F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep1_CNhs14067_13523-145F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13523-145F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day00Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track 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H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep3_CNhs13968_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13528-145F9\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep3_CNhs13968_ctss_rev Tc:H1ToHsc_Day03Br3- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep3_CNhs13968_13528-145F9_reverse 0 3104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13528-145F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day03%2c%20biol_rep3.CNhs13968.13528-145F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep3_CNhs13968_13528-145F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13528-145F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day03Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep3_CNhs13968_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13528-145F9\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep3_CNhs13968_tpm_rev Tc:H1ToHsc_Day03Br3- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep3_CNhs13968_13528-145F9_reverse 1 3104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13528-145F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day03%2c%20biol_rep3.CNhs13968.13528-145F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep3_CNhs13968_13528-145F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13528-145F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day03Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep3_CNhs13968_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13528-145F9\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep1_CNhs13969_ctss_fwd Tc:H1ToHsc_Day09Br1+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep1_CNhs13969_13529-145G1_forward 0 3105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13529-145G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep1.CNhs13969.13529-145G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep1_CNhs13969_13529-145G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13529-145G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day09Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep1_CNhs13969_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13529-145G1\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep1_CNhs13969_tpm_fwd Tc:H1ToHsc_Day09Br1+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep1_CNhs13969_13529-145G1_forward 1 3105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13529-145G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep1.CNhs13969.13529-145G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep1_CNhs13969_13529-145G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13529-145G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day09Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep1_CNhs13969_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13529-145G1\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep1_CNhs13969_ctss_rev Tc:H1ToHsc_Day09Br1- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep1_CNhs13969_13529-145G1_reverse 0 3106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13529-145G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep1.CNhs13969.13529-145G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep1_CNhs13969_13529-145G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13529-145G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day09Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep1_CNhs13969_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13529-145G1\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep1_CNhs13969_tpm_rev Tc:H1ToHsc_Day09Br1- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep1_CNhs13969_13529-145G1_reverse 1 3106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13529-145G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep1.CNhs13969.13529-145G1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep1_CNhs13969_13529-145G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13529-145G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day09Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep1_CNhs13969_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13529-145G1\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep2_CNhs13970_ctss_fwd Tc:H1ToHsc_Day09Br2+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep2_CNhs13970_13530-145G2_forward 0 3107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13530-145G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep2.CNhs13970.13530-145G2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep2_CNhs13970_13530-145G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13530-145G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day09Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep2_CNhs13970_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13530-145G2\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep2_CNhs13970_tpm_fwd Tc:H1ToHsc_Day09Br2+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep2_CNhs13970_13530-145G2_forward 1 3107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13530-145G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep2.CNhs13970.13530-145G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep2_CNhs13970_13530-145G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13530-145G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day09Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep2_CNhs13970_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13530-145G2\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep2_CNhs13970_ctss_rev Tc:H1ToHsc_Day09Br2- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep2_CNhs13970_13530-145G2_reverse 0 3108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13530-145G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep2.CNhs13970.13530-145G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep2_CNhs13970_13530-145G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13530-145G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day09Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep2_CNhs13970_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13530-145G2\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep2_CNhs13970_tpm_rev Tc:H1ToHsc_Day09Br2- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep2_CNhs13970_13530-145G2_reverse 1 3108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13530-145G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep2.CNhs13970.13530-145G2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep2_CNhs13970_13530-145G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13530-145G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day09Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep2_CNhs13970_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13530-145G2\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep3_CNhs13971_ctss_fwd Tc:H1ToHsc_Day09Br3+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep3_CNhs13971_13531-145G3_forward 0 3109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13531-145G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep3.CNhs13971.13531-145G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep3_CNhs13971_13531-145G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13531-145G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day09Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep3_CNhs13971_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13531-145G3\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep3_CNhs13971_tpm_fwd Tc:H1ToHsc_Day09Br3+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep3_CNhs13971_13531-145G3_forward 1 3109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13531-145G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep3.CNhs13971.13531-145G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep3_CNhs13971_13531-145G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13531-145G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day09Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep3_CNhs13971_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13531-145G3\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep3_CNhs13971_ctss_rev Tc:H1ToHsc_Day09Br3- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep3_CNhs13971_13531-145G3_reverse 0 3110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13531-145G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep3.CNhs13971.13531-145G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep3_CNhs13971_13531-145G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13531-145G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day09Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep3_CNhs13971_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13531-145G3\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep3_CNhs13971_tpm_rev Tc:H1ToHsc_Day09Br3- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep3_CNhs13971_13531-145G3_reverse 1 3110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13531-145G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep3.CNhs13971.13531-145G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep3_CNhs13971_13531-145G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13531-145G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day09Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep3_CNhs13971_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13531-145G3\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep1_CNhs14217_ctss_fwd Tc:hIPS+CCl2Br1+ bigWig hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_forward 0 3111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%20%2bCCl2%2c%20biol_rep1.CNhs14217.14383-156B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14383-156B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPS+CCl2Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSCCl2BiolRep1_CNhs14217_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep1_CNhs14217_tpm_fwd Tc:hIPS+CCl2Br1+ bigWig hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_forward 1 3111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%20%2bCCl2%2c%20biol_rep1.CNhs14217.14383-156B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14383-156B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPS+CCl2Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSCCl2BiolRep1_CNhs14217_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep1_CNhs14217_ctss_rev Tc:hIPS+CCl2Br1- bigWig hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_reverse 0 3112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%20%2bCCl2%2c%20biol_rep1.CNhs14217.14383-156B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14383-156B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPS+CCl2Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSCCl2BiolRep1_CNhs14217_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep1_CNhs14217_tpm_rev Tc:hIPS+CCl2Br1- bigWig hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_reverse 1 3112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%20%2bCCl2%2c%20biol_rep1.CNhs14217.14383-156B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14383-156B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPS+CCl2Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSCCl2BiolRep1_CNhs14217_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep2_CNhs14218_ctss_fwd Tc:hIPS+CCl2Br2+ bigWig hIPS +CCl2, biol_rep2_CNhs14218_14384-156C1_forward 0 3113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14384-156C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%20%2bCCl2%2c%20biol_rep2.CNhs14218.14384-156C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel hIPS +CCl2, biol_rep2_CNhs14218_14384-156C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14384-156C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPS+CCl2Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSCCl2BiolRep2_CNhs14218_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14384-156C1\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep2_CNhs14218_tpm_fwd Tc:hIPS+CCl2Br2+ bigWig hIPS +CCl2, biol_rep2_CNhs14218_14384-156C1_forward 1 3113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14384-156C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%20%2bCCl2%2c%20biol_rep2.CNhs14218.14384-156C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel hIPS +CCl2, biol_rep2_CNhs14218_14384-156C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14384-156C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPS+CCl2Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSCCl2BiolRep2_CNhs14218_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14384-156C1\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep2_CNhs14218_ctss_rev Tc:hIPS+CCl2Br2- bigWig hIPS +CCl2, biol_rep2_CNhs14218_14384-156C1_reverse 0 3114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14384-156C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%20%2bCCl2%2c%20biol_rep2.CNhs14218.14384-156C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel hIPS +CCl2, biol_rep2_CNhs14218_14384-156C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14384-156C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPS+CCl2Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSCCl2BiolRep2_CNhs14218_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14384-156C1\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep2_CNhs14218_tpm_rev Tc:hIPS+CCl2Br2- bigWig hIPS +CCl2, biol_rep2_CNhs14218_14384-156C1_reverse 1 3114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14384-156C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%20%2bCCl2%2c%20biol_rep2.CNhs14218.14384-156C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel hIPS +CCl2, biol_rep2_CNhs14218_14384-156C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14384-156C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPS+CCl2Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSCCl2BiolRep2_CNhs14218_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14384-156C1\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep3_CNhs14219_ctss_fwd Tc:hIPS+CCl2Br3+ bigWig hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_forward 0 3115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%20%2bCCl2%2c%20biol_rep3.CNhs14219.14385-156C2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14385-156C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPS+CCl2Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSCCl2BiolRep3_CNhs14219_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep3_CNhs14219_tpm_fwd Tc:hIPS+CCl2Br3+ bigWig hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_forward 1 3115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%20%2bCCl2%2c%20biol_rep3.CNhs14219.14385-156C2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14385-156C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPS+CCl2Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSCCl2BiolRep3_CNhs14219_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep3_CNhs14219_ctss_rev Tc:hIPS+CCl2Br3- bigWig hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_reverse 0 3116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%20%2bCCl2%2c%20biol_rep3.CNhs14219.14385-156C2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14385-156C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPS+CCl2Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSCCl2BiolRep3_CNhs14219_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep3_CNhs14219_tpm_rev Tc:hIPS+CCl2Br3- bigWig hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_reverse 1 3116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%20%2bCCl2%2c%20biol_rep3.CNhs14219.14385-156C2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14385-156C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPS+CCl2Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSCCl2BiolRep3_CNhs14219_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2\ urlLabel FANTOM5 Details:\ HIPSBiolRep1_CNhs14214_ctss_fwd Tc:hIPSBr1+ bigWig hIPS, biol_rep1_CNhs14214_14380-156B6_forward 0 3117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%2c%20biol_rep1.CNhs14214.14380-156B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep1_CNhs14214_14380-156B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14380-156B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep1_CNhs14214_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6\ urlLabel FANTOM5 Details:\ HIPSBiolRep1_CNhs14214_tpm_fwd Tc:hIPSBr1+ bigWig hIPS, biol_rep1_CNhs14214_14380-156B6_forward 1 3117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%2c%20biol_rep1.CNhs14214.14380-156B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep1_CNhs14214_14380-156B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14380-156B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep1_CNhs14214_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6\ urlLabel FANTOM5 Details:\ HIPSBiolRep1_CNhs14214_ctss_rev Tc:hIPSBr1- bigWig hIPS, biol_rep1_CNhs14214_14380-156B6_reverse 0 3118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%2c%20biol_rep1.CNhs14214.14380-156B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep1_CNhs14214_14380-156B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14380-156B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep1_CNhs14214_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6\ urlLabel FANTOM5 Details:\ HIPSBiolRep1_CNhs14214_tpm_rev Tc:hIPSBr1- bigWig hIPS, biol_rep1_CNhs14214_14380-156B6_reverse 1 3118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%2c%20biol_rep1.CNhs14214.14380-156B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep1_CNhs14214_14380-156B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14380-156B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep1_CNhs14214_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6\ urlLabel FANTOM5 Details:\ HIPSBiolRep2_CNhs14215_ctss_fwd Tc:hIPSBr2+ bigWig hIPS, biol_rep2_CNhs14215_14381-156B7_forward 0 3119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%2c%20biol_rep2.CNhs14215.14381-156B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep2_CNhs14215_14381-156B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14381-156B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep2_CNhs14215_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7\ urlLabel FANTOM5 Details:\ HIPSBiolRep2_CNhs14215_tpm_fwd Tc:hIPSBr2+ bigWig hIPS, biol_rep2_CNhs14215_14381-156B7_forward 1 3119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%2c%20biol_rep2.CNhs14215.14381-156B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep2_CNhs14215_14381-156B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14381-156B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep2_CNhs14215_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7\ urlLabel FANTOM5 Details:\ HIPSBiolRep2_CNhs14215_ctss_rev Tc:hIPSBr2- bigWig hIPS, biol_rep2_CNhs14215_14381-156B7_reverse 0 3120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%2c%20biol_rep2.CNhs14215.14381-156B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep2_CNhs14215_14381-156B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14381-156B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep2_CNhs14215_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7\ urlLabel FANTOM5 Details:\ HIPSBiolRep2_CNhs14215_tpm_rev Tc:hIPSBr2- bigWig hIPS, biol_rep2_CNhs14215_14381-156B7_reverse 1 3120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%2c%20biol_rep2.CNhs14215.14381-156B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep2_CNhs14215_14381-156B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14381-156B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep2_CNhs14215_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7\ urlLabel FANTOM5 Details:\ HIPSBiolRep3_CNhs14216_ctss_fwd Tc:hIPSBr3+ bigWig hIPS, biol_rep3_CNhs14216_14382-156B8_forward 0 3121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%2c%20biol_rep3.CNhs14216.14382-156B8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep3_CNhs14216_14382-156B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14382-156B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep3_CNhs14216_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8\ urlLabel FANTOM5 Details:\ HIPSBiolRep3_CNhs14216_tpm_fwd Tc:hIPSBr3+ bigWig hIPS, biol_rep3_CNhs14216_14382-156B8_forward 1 3121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%2c%20biol_rep3.CNhs14216.14382-156B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep3_CNhs14216_14382-156B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14382-156B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep3_CNhs14216_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8\ urlLabel FANTOM5 Details:\ HIPSBiolRep3_CNhs14216_ctss_rev Tc:hIPSBr3- bigWig hIPS, biol_rep3_CNhs14216_14382-156B8_reverse 0 3122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%2c%20biol_rep3.CNhs14216.14382-156B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep3_CNhs14216_14382-156B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14382-156B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep3_CNhs14216_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8\ urlLabel FANTOM5 Details:\ HIPSBiolRep3_CNhs14216_tpm_rev Tc:hIPSBr3- bigWig hIPS, biol_rep3_CNhs14216_14382-156B8_reverse 1 3122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hIPS%2c%20biol_rep3.CNhs14216.14382-156B8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep3_CNhs14216_14382-156B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14382-156B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep3_CNhs14216_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep1_CNhs12458_ctss_fwd Tc:K562ToHemin_00hr00minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_forward 0 3123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13079-140B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep1.CNhs12458.13079-140B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_forward\ maxHeightPixels 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Tc:MdmToLps_06hrD2+ bigWig Monocyte-derived macrophages response to LPS, 06hr, donor2 (t14 Subject2)_CNhs13393_12809-136H1_forward 1 3255 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12809-136H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor2%20%28t14%20Subject2%29.CNhs13393.12809-136H1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor2 (t14 Subject2)_CNhs13393_12809-136H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12809-136H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_06hrD2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS06hrDonor2T14Subject2_CNhs13393_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12809-136H1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS06hrDonor2T14Subject2_CNhs13393_ctss_rev Tc:MdmToLps_06hrD2- bigWig Monocyte-derived macrophages response to LPS, 06hr, donor2 (t14 Subject2)_CNhs13393_12809-136H1_reverse 0 3256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12809-136H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor2%20%28t14%20Subject2%29.CNhs13393.12809-136H1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor2 (t14 Subject2)_CNhs13393_12809-136H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12809-136H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_06hrD2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS06hrDonor2T14Subject2_CNhs13393_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12809-136H1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS06hrDonor2T14Subject2_CNhs13393_tpm_rev Tc:MdmToLps_06hrD2- bigWig Monocyte-derived macrophages response to LPS, 06hr, donor2 (t14 Subject2)_CNhs13393_12809-136H1_reverse 1 3256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12809-136H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor2%20%28t14%20Subject2%29.CNhs13393.12809-136H1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor2 (t14 Subject2)_CNhs13393_12809-136H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12809-136H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_06hrD2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS06hrDonor2T14Subject2_CNhs13393_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12809-136H1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS06hrDonor3T14Subject3_CNhs13187_ctss_fwd 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Tc:MdmToLps_06hrD3+ bigWig Monocyte-derived macrophages response to LPS, 06hr, donor3 (t14 Subject3)_CNhs13187_12907-137I9_forward 1 3257 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12907-137I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor3%20%28t14%20Subject3%29.CNhs13187.12907-137I9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor3 (t14 Subject3)_CNhs13187_12907-137I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12907-137I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_06hrD3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS06hrDonor3T14Subject3_CNhs13187_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12907-137I9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS06hrDonor3T14Subject3_CNhs13187_ctss_rev Tc:MdmToLps_06hrD3- bigWig Monocyte-derived macrophages response to LPS, 06hr, donor3 (t14 Subject3)_CNhs13187_12907-137I9_reverse 0 3258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12907-137I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor3%20%28t14%20Subject3%29.CNhs13187.12907-137I9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor3 (t14 Subject3)_CNhs13187_12907-137I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12907-137I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_06hrD3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS06hrDonor3T14Subject3_CNhs13187_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12907-137I9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS06hrDonor3T14Subject3_CNhs13187_tpm_rev Tc:MdmToLps_06hrD3- bigWig Monocyte-derived macrophages response to LPS, 06hr, donor3 (t14 Subject3)_CNhs13187_12907-137I9_reverse 1 3258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12907-137I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor3%20%28t14%20Subject3%29.CNhs13187.12907-137I9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor3 (t14 Subject3)_CNhs13187_12907-137I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12907-137I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_06hrD3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS06hrDonor3T14Subject3_CNhs13187_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12907-137I9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS07hrDonor1T15Subject1_CNhs12926_ctss_fwd 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Tc:MdmToLps_07hrD1- bigWig Monocyte-derived macrophages response to LPS, 07hr, donor1 (t15 Subject1)_CNhs12926_12712-135F3_reverse 0 3260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12712-135F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor1%20%28t15%20Subject1%29.CNhs12926.12712-135F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor1 (t15 Subject1)_CNhs12926_12712-135F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12712-135F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_07hrD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS07hrDonor1T15Subject1_CNhs12926_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12712-135F3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS07hrDonor1T15Subject1_CNhs12926_tpm_rev 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Tc:MdmToLps_07hrD2+ bigWig Monocyte-derived macrophages response to LPS, 07hr, donor2 (t15 Subject2)_CNhs13394_12810-136H2_forward 0 3261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12810-136H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor2%20%28t15%20Subject2%29.CNhs13394.12810-136H2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor2 (t15 Subject2)_CNhs13394_12810-136H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12810-136H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_07hrD2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS07hrDonor2T15Subject2_CNhs13394_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12810-136H2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS07hrDonor2T15Subject2_CNhs13394_tpm_fwd Tc:MdmToLps_07hrD2+ bigWig Monocyte-derived macrophages response to LPS, 07hr, donor2 (t15 Subject2)_CNhs13394_12810-136H2_forward 1 3261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12810-136H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor2%20%28t15%20Subject2%29.CNhs13394.12810-136H2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor2 (t15 Subject2)_CNhs13394_12810-136H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12810-136H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_07hrD2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS07hrDonor2T15Subject2_CNhs13394_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12810-136H2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS07hrDonor2T15Subject2_CNhs13394_ctss_rev Tc:MdmToLps_07hrD2- bigWig Monocyte-derived macrophages response to LPS, 07hr, donor2 (t15 Subject2)_CNhs13394_12810-136H2_reverse 0 3262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12810-136H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor2%20%28t15%20Subject2%29.CNhs13394.12810-136H2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor2 (t15 Subject2)_CNhs13394_12810-136H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12810-136H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_07hrD2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS07hrDonor2T15Subject2_CNhs13394_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12810-136H2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS07hrDonor2T15Subject2_CNhs13394_tpm_rev Tc:MdmToLps_07hrD2- bigWig Monocyte-derived macrophages response to LPS, 07hr, donor2 (t15 Subject2)_CNhs13394_12810-136H2_reverse 1 3262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12810-136H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor2%20%28t15%20Subject2%29.CNhs13394.12810-136H2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor2 (t15 Subject2)_CNhs13394_12810-136H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12810-136H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_07hrD2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS07hrDonor2T15Subject2_CNhs13394_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12810-136H2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS07hrDonor3T15Subject3_CNhs13325_ctss_fwd Tc:MdmToLps_07hrD3+ bigWig Monocyte-derived macrophages response to LPS, 07hr, donor3 (t15 Subject3)_CNhs13325_12908-138A1_forward 0 3263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12908-138A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor3%20%28t15%20Subject3%29.CNhs13325.12908-138A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor3 (t15 Subject3)_CNhs13325_12908-138A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12908-138A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_07hrD3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS07hrDonor3T15Subject3_CNhs13325_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12908-138A1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS07hrDonor3T15Subject3_CNhs13325_tpm_fwd Tc:MdmToLps_07hrD3+ bigWig Monocyte-derived macrophages response to LPS, 07hr, donor3 (t15 Subject3)_CNhs13325_12908-138A1_forward 1 3263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12908-138A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor3%20%28t15%20Subject3%29.CNhs13325.12908-138A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor3 (t15 Subject3)_CNhs13325_12908-138A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12908-138A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_07hrD3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS07hrDonor3T15Subject3_CNhs13325_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12908-138A1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS07hrDonor3T15Subject3_CNhs13325_ctss_rev Tc:MdmToLps_07hrD3- bigWig Monocyte-derived macrophages response to LPS, 07hr, donor3 (t15 Subject3)_CNhs13325_12908-138A1_reverse 0 3264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12908-138A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor3%20%28t15%20Subject3%29.CNhs13325.12908-138A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor3 (t15 Subject3)_CNhs13325_12908-138A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12908-138A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_07hrD3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS07hrDonor3T15Subject3_CNhs13325_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12908-138A1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS07hrDonor3T15Subject3_CNhs13325_tpm_rev Tc:MdmToLps_07hrD3- bigWig Monocyte-derived macrophages response to LPS, 07hr, donor3 (t15 Subject3)_CNhs13325_12908-138A1_reverse 1 3264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12908-138A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor3%20%28t15%20Subject3%29.CNhs13325.12908-138A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor3 (t15 Subject3)_CNhs13325_12908-138A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12908-138A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_07hrD3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS07hrDonor3T15Subject3_CNhs13325_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12908-138A1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS10hrDonor1T17Subject1_CNhs12928_ctss_fwd Tc:MdmToLps_10hrD1+ bigWig Monocyte-derived macrophages response to LPS, 10hr, donor1 (t17 Subject1)_CNhs12928_12714-135F5_forward 0 3265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12714-135F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor1%20%28t17%20Subject1%29.CNhs12928.12714-135F5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor1 (t17 Subject1)_CNhs12928_12714-135F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12714-135F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_10hrD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS10hrDonor1T17Subject1_CNhs12928_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12714-135F5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS10hrDonor1T17Subject1_CNhs12928_tpm_fwd Tc:MdmToLps_10hrD1+ bigWig Monocyte-derived macrophages response to LPS, 10hr, donor1 (t17 Subject1)_CNhs12928_12714-135F5_forward 1 3265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12714-135F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor1%20%28t17%20Subject1%29.CNhs12928.12714-135F5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor1 (t17 Subject1)_CNhs12928_12714-135F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12714-135F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_10hrD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS10hrDonor1T17Subject1_CNhs12928_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12714-135F5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS10hrDonor1T17Subject1_CNhs12928_ctss_rev Tc:MdmToLps_10hrD1- bigWig Monocyte-derived macrophages response to LPS, 10hr, donor1 (t17 Subject1)_CNhs12928_12714-135F5_reverse 0 3266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12714-135F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor1%20%28t17%20Subject1%29.CNhs12928.12714-135F5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor1 (t17 Subject1)_CNhs12928_12714-135F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12714-135F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_10hrD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS10hrDonor1T17Subject1_CNhs12928_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12714-135F5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS10hrDonor1T17Subject1_CNhs12928_tpm_rev Tc:MdmToLps_10hrD1- bigWig Monocyte-derived macrophages response to LPS, 10hr, donor1 (t17 Subject1)_CNhs12928_12714-135F5_reverse 1 3266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12714-135F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor1%20%28t17%20Subject1%29.CNhs12928.12714-135F5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor1 (t17 Subject1)_CNhs12928_12714-135F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12714-135F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_10hrD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS10hrDonor1T17Subject1_CNhs12928_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12714-135F5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor1T20Subject1_CNhs12930_ctss_fwd Tc:MdmToLps_16hrD1+ bigWig Monocyte-derived macrophages response to LPS, 16hr, donor1 (t20 Subject1)_CNhs12930_12717-135F8_forward 0 3267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12717-135F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor1%20%28t20%20Subject1%29.CNhs12930.12717-135F8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor1 (t20 Subject1)_CNhs12930_12717-135F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12717-135F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_16hrD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS16hrDonor1T20Subject1_CNhs12930_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12717-135F8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor1T20Subject1_CNhs12930_tpm_fwd Tc:MdmToLps_16hrD1+ bigWig Monocyte-derived macrophages response to LPS, 16hr, donor1 (t20 Subject1)_CNhs12930_12717-135F8_forward 1 3267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12717-135F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor1%20%28t20%20Subject1%29.CNhs12930.12717-135F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor1 (t20 Subject1)_CNhs12930_12717-135F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12717-135F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_16hrD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS16hrDonor1T20Subject1_CNhs12930_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12717-135F8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor1T20Subject1_CNhs12930_ctss_rev Tc:MdmToLps_16hrD1- bigWig Monocyte-derived macrophages response to LPS, 16hr, donor1 (t20 Subject1)_CNhs12930_12717-135F8_reverse 0 3268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12717-135F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor1%20%28t20%20Subject1%29.CNhs12930.12717-135F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor1 (t20 Subject1)_CNhs12930_12717-135F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12717-135F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_16hrD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS16hrDonor1T20Subject1_CNhs12930_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12717-135F8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor1T20Subject1_CNhs12930_tpm_rev 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sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_tpm_fwd Tc:Saos-2Untreated_Day28Br1+ bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_forward 1 3277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep1%20%28B1%20T17%29.CNhs14194.12697-135D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12697-135D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_ctss_rev Tc:Saos-2Untreated_Day28Br1- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_reverse 0 3278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep1%20%28B1%20T17%29.CNhs14194.12697-135D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12697-135D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_tpm_rev Tc:Saos-2Untreated_Day28Br1- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_reverse 1 3278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep1%20%28B1%20T17%29.CNhs14194.12697-135D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12697-135D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_ctss_fwd Tc:Saos-2Untreated_Day28Br2+ bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_forward 0 3279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep2%20%28B2%20T17%29.CNhs14195.12795-136F5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12795-136F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_tpm_fwd Tc:Saos-2Untreated_Day28Br2+ bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_forward 1 3279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep2%20%28B2%20T17%29.CNhs14195.12795-136F5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12795-136F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_ctss_rev Tc:Saos-2Untreated_Day28Br2- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_reverse 0 3280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep2%20%28B2%20T17%29.CNhs14195.12795-136F5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12795-136F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_tpm_rev Tc:Saos-2Untreated_Day28Br2- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_reverse 1 3280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep2%20%28B2%20T17%29.CNhs14195.12795-136F5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12795-136F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_ctss_fwd Tc:Saos-2Untreated_Day28Br3+ bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_forward 0 3281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep3%20%28B3%20T17%29.CNhs14196.12893-137H4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12893-137H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_tpm_fwd Tc:Saos-2Untreated_Day28Br3+ bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_forward 1 3281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep3%20%28B3%20T17%29.CNhs14196.12893-137H4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12893-137H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_ctss_rev Tc:Saos-2Untreated_Day28Br3- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_reverse 0 3282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep3%20%28B3%20T17%29.CNhs14196.12893-137H4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12893-137H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_tpm_rev Tc:Saos-2Untreated_Day28Br3- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_reverse 1 3282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep3%20%28B3%20T17%29.CNhs14196.12893-137H4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12893-137H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4\ urlLabel FANTOM5 Details:\ AchillesTendonDonor2_CNhs13435_ctss_fwd AchillesTendonD2+ bigWig achilles tendon, donor2_CNhs13435_10292-104G4_forward 0 3283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/achilles%20tendon%2c%20donor2.CNhs13435.10292-104G4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel achilles tendon, donor2_CNhs13435_10292-104G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10292-104G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AchillesTendonD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AchillesTendonDonor2_CNhs13435_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4\ urlLabel FANTOM5 Details:\ AchillesTendonDonor2_CNhs13435_tpm_fwd AchillesTendonD2+ bigWig achilles tendon, donor2_CNhs13435_10292-104G4_forward 1 3283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/achilles%20tendon%2c%20donor2.CNhs13435.10292-104G4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel achilles tendon, donor2_CNhs13435_10292-104G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10292-104G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AchillesTendonD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AchillesTendonDonor2_CNhs13435_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4\ urlLabel FANTOM5 Details:\ AchillesTendonDonor2_CNhs13435_ctss_rev AchillesTendonD2- bigWig achilles tendon, donor2_CNhs13435_10292-104G4_reverse 0 3284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/achilles%20tendon%2c%20donor2.CNhs13435.10292-104G4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel achilles tendon, donor2_CNhs13435_10292-104G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10292-104G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AchillesTendonD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AchillesTendonDonor2_CNhs13435_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4\ urlLabel FANTOM5 Details:\ AchillesTendonDonor2_CNhs13435_tpm_rev AchillesTendonD2- bigWig achilles tendon, donor2_CNhs13435_10292-104G4_reverse 1 3284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/achilles%20tendon%2c%20donor2.CNhs13435.10292-104G4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel achilles tendon, donor2_CNhs13435_10292-104G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10292-104G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AchillesTendonD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AchillesTendonDonor2_CNhs13435_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4\ urlLabel FANTOM5 Details:\ AdiposeDonor1_CNhs13972_ctss_fwd AdiposeD1+ bigWig adipose, donor1_CNhs13972_10184-103D4_forward 0 3285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%2c%20donor1.CNhs13972.10184-103D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel adipose, donor1_CNhs13972_10184-103D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10184-103D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor1_CNhs13972_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4\ urlLabel FANTOM5 Details:\ AdiposeDonor1_CNhs13972_tpm_fwd AdiposeD1+ bigWig adipose, donor1_CNhs13972_10184-103D4_forward 1 3285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%2c%20donor1.CNhs13972.10184-103D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel adipose, donor1_CNhs13972_10184-103D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10184-103D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor1_CNhs13972_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4\ urlLabel FANTOM5 Details:\ AdiposeDonor1_CNhs13972_ctss_rev AdiposeD1- bigWig adipose, donor1_CNhs13972_10184-103D4_reverse 0 3286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%2c%20donor1.CNhs13972.10184-103D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel adipose, donor1_CNhs13972_10184-103D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10184-103D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor1_CNhs13972_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4\ urlLabel FANTOM5 Details:\ AdiposeDonor1_CNhs13972_tpm_rev AdiposeD1- bigWig adipose, donor1_CNhs13972_10184-103D4_reverse 1 3286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%2c%20donor1.CNhs13972.10184-103D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel adipose, donor1_CNhs13972_10184-103D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10184-103D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor1_CNhs13972_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4\ urlLabel FANTOM5 Details:\ AdiposeDonor2_CNhs13973_ctss_fwd AdiposeD2+ bigWig adipose, donor2_CNhs13973_10185-103D5_forward 0 3287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%2c%20donor2.CNhs13973.10185-103D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel adipose, donor2_CNhs13973_10185-103D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10185-103D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor2_CNhs13973_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5\ urlLabel FANTOM5 Details:\ AdiposeDonor2_CNhs13973_tpm_fwd AdiposeD2+ bigWig adipose, donor2_CNhs13973_10185-103D5_forward 1 3287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%2c%20donor2.CNhs13973.10185-103D5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel adipose, donor2_CNhs13973_10185-103D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10185-103D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor2_CNhs13973_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5\ urlLabel FANTOM5 Details:\ AdiposeDonor2_CNhs13973_ctss_rev AdiposeD2- bigWig adipose, donor2_CNhs13973_10185-103D5_reverse 0 3288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%2c%20donor2.CNhs13973.10185-103D5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel adipose, donor2_CNhs13973_10185-103D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10185-103D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor2_CNhs13973_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5\ urlLabel FANTOM5 Details:\ AdiposeDonor2_CNhs13973_tpm_rev AdiposeD2- bigWig adipose, donor2_CNhs13973_10185-103D5_reverse 1 3288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%2c%20donor2.CNhs13973.10185-103D5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel adipose, donor2_CNhs13973_10185-103D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10185-103D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor2_CNhs13973_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5\ urlLabel FANTOM5 Details:\ AdiposeDonor3_CNhs13974_ctss_fwd AdiposeD3+ bigWig adipose, donor3_CNhs13974_10186-103D6_forward 0 3289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%2c%20donor3.CNhs13974.10186-103D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel adipose, donor3_CNhs13974_10186-103D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10186-103D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD3+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor3_CNhs13974_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6\ urlLabel FANTOM5 Details:\ AdiposeDonor3_CNhs13974_tpm_fwd AdiposeD3+ bigWig adipose, donor3_CNhs13974_10186-103D6_forward 1 3289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%2c%20donor3.CNhs13974.10186-103D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel adipose, donor3_CNhs13974_10186-103D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10186-103D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD3+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor3_CNhs13974_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6\ urlLabel FANTOM5 Details:\ AdiposeDonor3_CNhs13974_ctss_rev AdiposeD3- bigWig adipose, donor3_CNhs13974_10186-103D6_reverse 0 3290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%2c%20donor3.CNhs13974.10186-103D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel adipose, donor3_CNhs13974_10186-103D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10186-103D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD3-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor3_CNhs13974_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6\ urlLabel FANTOM5 Details:\ AdiposeDonor3_CNhs13974_tpm_rev AdiposeD3- bigWig adipose, donor3_CNhs13974_10186-103D6_reverse 1 3290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%2c%20donor3.CNhs13974.10186-103D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel adipose, donor3_CNhs13974_10186-103D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10186-103D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD3-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor3_CNhs13974_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6\ urlLabel FANTOM5 Details:\ AdiposeDonor4_CNhs13975_ctss_fwd AdiposeD4+ bigWig adipose, donor4_CNhs13975_10187-103D7_forward 0 3291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%2c%20donor4.CNhs13975.10187-103D7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel adipose, donor4_CNhs13975_10187-103D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10187-103D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD4+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor4_CNhs13975_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7\ urlLabel FANTOM5 Details:\ AdiposeDonor4_CNhs13975_tpm_fwd AdiposeD4+ bigWig adipose, donor4_CNhs13975_10187-103D7_forward 1 3291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%2c%20donor4.CNhs13975.10187-103D7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel adipose, donor4_CNhs13975_10187-103D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10187-103D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD4+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor4_CNhs13975_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7\ urlLabel FANTOM5 Details:\ AdiposeDonor4_CNhs13975_ctss_rev AdiposeD4- bigWig adipose, donor4_CNhs13975_10187-103D7_reverse 0 3292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%2c%20donor4.CNhs13975.10187-103D7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel adipose, donor4_CNhs13975_10187-103D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10187-103D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD4-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor4_CNhs13975_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7\ urlLabel FANTOM5 Details:\ AdiposeDonor4_CNhs13975_tpm_rev AdiposeD4- bigWig adipose, donor4_CNhs13975_10187-103D7_reverse 1 3292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%2c%20donor4.CNhs13975.10187-103D7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel adipose, donor4_CNhs13975_10187-103D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10187-103D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD4-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor4_CNhs13975_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7\ urlLabel FANTOM5 Details:\ AdiposeTissueAdultPool1_CNhs10615_ctss_fwd AdiposeTissueAdultPl1+ bigWig adipose tissue, adult, pool1_CNhs10615_10010-101C1_forward 0 3293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%20tissue%2c%20adult%2c%20pool1.CNhs10615.10010-101C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel adipose tissue, adult, pool1_CNhs10615_10010-101C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10010-101C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeTissueAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeTissueAdultPool1_CNhs10615_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1\ urlLabel FANTOM5 Details:\ AdiposeTissueAdultPool1_CNhs10615_tpm_fwd AdiposeTissueAdultPl1+ bigWig adipose tissue, adult, pool1_CNhs10615_10010-101C1_forward 1 3293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%20tissue%2c%20adult%2c%20pool1.CNhs10615.10010-101C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel adipose tissue, adult, pool1_CNhs10615_10010-101C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10010-101C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeTissueAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeTissueAdultPool1_CNhs10615_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1\ urlLabel FANTOM5 Details:\ AdiposeTissueAdultPool1_CNhs10615_ctss_rev AdiposeTissueAdultPl1- bigWig adipose tissue, adult, pool1_CNhs10615_10010-101C1_reverse 0 3294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%20tissue%2c%20adult%2c%20pool1.CNhs10615.10010-101C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel adipose tissue, adult, pool1_CNhs10615_10010-101C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10010-101C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeTissueAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeTissueAdultPool1_CNhs10615_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1\ urlLabel FANTOM5 Details:\ AdiposeTissueAdultPool1_CNhs10615_tpm_rev AdiposeTissueAdultPl1- bigWig adipose tissue, adult, pool1_CNhs10615_10010-101C1_reverse 1 3294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adipose%20tissue%2c%20adult%2c%20pool1.CNhs10615.10010-101C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel adipose tissue, adult, pool1_CNhs10615_10010-101C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10010-101C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeTissueAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeTissueAdultPool1_CNhs10615_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1\ urlLabel FANTOM5 Details:\ AdrenalGlandAdultPool1_CNhs11793_ctss_fwd AdrenalGlandAdultPl1+ bigWig adrenal gland, adult, pool1_CNhs11793_10081-102A9_forward 0 3295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adrenal%20gland%2c%20adult%2c%20pool1.CNhs11793.10081-102A9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel adrenal gland, adult, pool1_CNhs11793_10081-102A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10081-102A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdrenalGlandAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdrenalGlandAdultPool1_CNhs11793_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9\ urlLabel FANTOM5 Details:\ AdrenalGlandAdultPool1_CNhs11793_tpm_fwd AdrenalGlandAdultPl1+ bigWig adrenal gland, adult, pool1_CNhs11793_10081-102A9_forward 1 3295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adrenal%20gland%2c%20adult%2c%20pool1.CNhs11793.10081-102A9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel adrenal gland, adult, pool1_CNhs11793_10081-102A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10081-102A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdrenalGlandAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdrenalGlandAdultPool1_CNhs11793_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9\ urlLabel FANTOM5 Details:\ AdrenalGlandAdultPool1_CNhs11793_ctss_rev AdrenalGlandAdultPl1- bigWig adrenal gland, adult, pool1_CNhs11793_10081-102A9_reverse 0 3296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adrenal%20gland%2c%20adult%2c%20pool1.CNhs11793.10081-102A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel adrenal gland, adult, pool1_CNhs11793_10081-102A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10081-102A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdrenalGlandAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdrenalGlandAdultPool1_CNhs11793_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9\ urlLabel FANTOM5 Details:\ AdrenalGlandAdultPool1_CNhs11793_tpm_rev AdrenalGlandAdultPl1- bigWig adrenal gland, adult, pool1_CNhs11793_10081-102A9_reverse 1 3296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/adrenal%20gland%2c%20adult%2c%20pool1.CNhs11793.10081-102A9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel adrenal gland, adult, pool1_CNhs11793_10081-102A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10081-102A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdrenalGlandAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdrenalGlandAdultPool1_CNhs11793_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10196_CNhs13793_ctss_fwd AmygdalaAdultD10196+ bigWig amygdala - adult, donor10196_CNhs13793_10167-103B5_forward 0 3297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/amygdala%20-%20adult%2c%20donor10196.CNhs13793.10167-103B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel amygdala - adult, donor10196_CNhs13793_10167-103B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10167-103B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaAdultDonor10196_CNhs13793_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10196_CNhs13793_tpm_fwd AmygdalaAdultD10196+ bigWig amygdala - adult, donor10196_CNhs13793_10167-103B5_forward 1 3297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/amygdala%20-%20adult%2c%20donor10196.CNhs13793.10167-103B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel amygdala - adult, donor10196_CNhs13793_10167-103B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10167-103B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaAdultDonor10196_CNhs13793_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10196_CNhs13793_ctss_rev AmygdalaAdultD10196- bigWig amygdala - adult, donor10196_CNhs13793_10167-103B5_reverse 0 3298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/amygdala%20-%20adult%2c%20donor10196.CNhs13793.10167-103B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel amygdala - adult, donor10196_CNhs13793_10167-103B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10167-103B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaAdultDonor10196_CNhs13793_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10196_CNhs13793_tpm_rev AmygdalaAdultD10196- bigWig amygdala - adult, donor10196_CNhs13793_10167-103B5_reverse 1 3298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/amygdala%20-%20adult%2c%20donor10196.CNhs13793.10167-103B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel amygdala - adult, donor10196_CNhs13793_10167-103B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10167-103B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaAdultDonor10196_CNhs13793_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10252_CNhs12311_ctss_fwd AmygdalaAdultD10252+ bigWig amygdala, adult, donor10252_CNhs12311_10151-102I7_forward 0 3299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/amygdala%2c%20adult%2c%20donor10252.CNhs12311.10151-102I7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel amygdala, adult, donor10252_CNhs12311_10151-102I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10151-102I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaAdultDonor10252_CNhs12311_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10252_CNhs12311_tpm_fwd AmygdalaAdultD10252+ bigWig amygdala, adult, donor10252_CNhs12311_10151-102I7_forward 1 3299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/amygdala%2c%20adult%2c%20donor10252.CNhs12311.10151-102I7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel amygdala, adult, donor10252_CNhs12311_10151-102I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10151-102I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaAdultDonor10252_CNhs12311_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10252_CNhs12311_ctss_rev AmygdalaAdultD10252- bigWig amygdala, adult, donor10252_CNhs12311_10151-102I7_reverse 0 3300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/amygdala%2c%20adult%2c%20donor10252.CNhs12311.10151-102I7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel amygdala, adult, donor10252_CNhs12311_10151-102I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10151-102I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaAdultDonor10252_CNhs12311_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10252_CNhs12311_tpm_rev AmygdalaAdultD10252- bigWig amygdala, adult, donor10252_CNhs12311_10151-102I7_reverse 1 3300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/amygdala%2c%20adult%2c%20donor10252.CNhs12311.10151-102I7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel amygdala, adult, donor10252_CNhs12311_10151-102I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10151-102I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaAdultDonor10252_CNhs12311_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7\ urlLabel FANTOM5 Details:\ AmygdalaNewbornDonor10223_CNhs14078_ctss_fwd AmygdalaNbD1D10223+ bigWig amygdala, newborn, donor10223_CNhs14078_10360-105E9_forward 0 3301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/amygdala%2c%20newborn%2c%20donor10223.CNhs14078.10360-105E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel amygdala, newborn, donor10223_CNhs14078_10360-105E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10360-105E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaNbD1D10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaNewbornDonor10223_CNhs14078_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9\ urlLabel FANTOM5 Details:\ AmygdalaNewbornDonor10223_CNhs14078_tpm_fwd AmygdalaNbD1D10223+ bigWig amygdala, newborn, donor10223_CNhs14078_10360-105E9_forward 1 3301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/amygdala%2c%20newborn%2c%20donor10223.CNhs14078.10360-105E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel amygdala, newborn, donor10223_CNhs14078_10360-105E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10360-105E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaNbD1D10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaNewbornDonor10223_CNhs14078_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9\ urlLabel FANTOM5 Details:\ AmygdalaNewbornDonor10223_CNhs14078_ctss_rev AmygdalaNbD1D10223- bigWig amygdala, newborn, donor10223_CNhs14078_10360-105E9_reverse 0 3302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/amygdala%2c%20newborn%2c%20donor10223.CNhs14078.10360-105E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel amygdala, newborn, donor10223_CNhs14078_10360-105E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10360-105E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaNbD1D10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaNewbornDonor10223_CNhs14078_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9\ urlLabel FANTOM5 Details:\ AmygdalaNewbornDonor10223_CNhs14078_tpm_rev AmygdalaNbD1D10223- bigWig amygdala, newborn, donor10223_CNhs14078_10360-105E9_reverse 1 3302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/amygdala%2c%20newborn%2c%20donor10223.CNhs14078.10360-105E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel amygdala, newborn, donor10223_CNhs14078_10360-105E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10360-105E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaNbD1D10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaNewbornDonor10223_CNhs14078_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9\ urlLabel FANTOM5 Details:\ AortaAdultPool1_CNhs11760_ctss_fwd AortaAdultPl1+ bigWig aorta, adult, pool1_CNhs11760_10052-101G7_forward 0 3303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/aorta%2c%20adult%2c%20pool1.CNhs11760.10052-101G7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel aorta, adult, pool1_CNhs11760_10052-101G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10052-101G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AortaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AortaAdultPool1_CNhs11760_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7\ urlLabel FANTOM5 Details:\ AortaAdultPool1_CNhs11760_tpm_fwd AortaAdultPl1+ bigWig aorta, adult, pool1_CNhs11760_10052-101G7_forward 1 3303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/aorta%2c%20adult%2c%20pool1.CNhs11760.10052-101G7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel aorta, adult, pool1_CNhs11760_10052-101G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10052-101G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AortaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AortaAdultPool1_CNhs11760_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7\ urlLabel FANTOM5 Details:\ AortaAdultPool1_CNhs11760_ctss_rev AortaAdultPl1- bigWig aorta, adult, pool1_CNhs11760_10052-101G7_reverse 0 3304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/aorta%2c%20adult%2c%20pool1.CNhs11760.10052-101G7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel aorta, adult, pool1_CNhs11760_10052-101G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10052-101G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AortaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AortaAdultPool1_CNhs11760_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7\ urlLabel FANTOM5 Details:\ AortaAdultPool1_CNhs11760_tpm_rev AortaAdultPl1- bigWig aorta, adult, pool1_CNhs11760_10052-101G7_reverse 1 3304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/aorta%2c%20adult%2c%20pool1.CNhs11760.10052-101G7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel aorta, adult, pool1_CNhs11760_10052-101G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10052-101G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AortaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AortaAdultPool1_CNhs11760_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7\ urlLabel FANTOM5 Details:\ AppendixAdult_CNhs12842_ctss_fwd AppendixAdult+ bigWig appendix, adult_CNhs12842_10189-103D9_forward 0 3305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/appendix%2c%20adult.CNhs12842.10189-103D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel appendix, adult_CNhs12842_10189-103D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10189-103D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AppendixAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AppendixAdult_CNhs12842_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9\ urlLabel FANTOM5 Details:\ AppendixAdult_CNhs12842_tpm_fwd AppendixAdult+ bigWig appendix, adult_CNhs12842_10189-103D9_forward 1 3305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/appendix%2c%20adult.CNhs12842.10189-103D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel appendix, adult_CNhs12842_10189-103D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10189-103D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AppendixAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AppendixAdult_CNhs12842_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9\ urlLabel FANTOM5 Details:\ AppendixAdult_CNhs12842_ctss_rev AppendixAdult- bigWig appendix, adult_CNhs12842_10189-103D9_reverse 0 3306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/appendix%2c%20adult.CNhs12842.10189-103D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel appendix, adult_CNhs12842_10189-103D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10189-103D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AppendixAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AppendixAdult_CNhs12842_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9\ urlLabel FANTOM5 Details:\ AppendixAdult_CNhs12842_tpm_rev AppendixAdult- bigWig appendix, adult_CNhs12842_10189-103D9_reverse 1 3306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/appendix%2c%20adult.CNhs12842.10189-103D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel appendix, adult_CNhs12842_10189-103D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10189-103D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AppendixAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AppendixAdult_CNhs12842_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9\ urlLabel FANTOM5 Details:\ ArteryAdult_CNhs12843_ctss_fwd ArteryAdult+ bigWig artery, adult_CNhs12843_10190-103E1_forward 0 3307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/artery%2c%20adult.CNhs12843.10190-103E1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel artery, adult_CNhs12843_10190-103E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10190-103E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ArteryAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ArteryAdult_CNhs12843_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1\ urlLabel FANTOM5 Details:\ ArteryAdult_CNhs12843_tpm_fwd ArteryAdult+ bigWig artery, adult_CNhs12843_10190-103E1_forward 1 3307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/artery%2c%20adult.CNhs12843.10190-103E1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel artery, adult_CNhs12843_10190-103E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10190-103E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ArteryAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ArteryAdult_CNhs12843_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1\ urlLabel FANTOM5 Details:\ ArteryAdult_CNhs12843_ctss_rev ArteryAdult- bigWig artery, adult_CNhs12843_10190-103E1_reverse 0 3308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/artery%2c%20adult.CNhs12843.10190-103E1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel artery, adult_CNhs12843_10190-103E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10190-103E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ArteryAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ArteryAdult_CNhs12843_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1\ urlLabel FANTOM5 Details:\ ArteryAdult_CNhs12843_tpm_rev ArteryAdult- bigWig artery, adult_CNhs12843_10190-103E1_reverse 1 3308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/artery%2c%20adult.CNhs12843.10190-103E1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel artery, adult_CNhs12843_10190-103E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10190-103E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ArteryAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ArteryAdult_CNhs12843_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1\ urlLabel FANTOM5 Details:\ BladderAdultPool1_CNhs10616_ctss_fwd BladderAdultPl1+ bigWig bladder, adult, pool1_CNhs10616_10011-101C2_forward 0 3309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/bladder%2c%20adult%2c%20pool1.CNhs10616.10011-101C2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel bladder, adult, pool1_CNhs10616_10011-101C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10011-101C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BladderAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BladderAdultPool1_CNhs10616_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2\ urlLabel FANTOM5 Details:\ BladderAdultPool1_CNhs10616_tpm_fwd BladderAdultPl1+ bigWig bladder, adult, pool1_CNhs10616_10011-101C2_forward 1 3309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/bladder%2c%20adult%2c%20pool1.CNhs10616.10011-101C2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel bladder, adult, pool1_CNhs10616_10011-101C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10011-101C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BladderAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BladderAdultPool1_CNhs10616_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2\ urlLabel FANTOM5 Details:\ BladderAdultPool1_CNhs10616_ctss_rev BladderAdultPl1- bigWig bladder, adult, pool1_CNhs10616_10011-101C2_reverse 0 3310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/bladder%2c%20adult%2c%20pool1.CNhs10616.10011-101C2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel bladder, adult, pool1_CNhs10616_10011-101C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10011-101C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BladderAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BladderAdultPool1_CNhs10616_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2\ urlLabel FANTOM5 Details:\ BladderAdultPool1_CNhs10616_tpm_rev BladderAdultPl1- bigWig bladder, adult, pool1_CNhs10616_10011-101C2_reverse 1 3310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/bladder%2c%20adult%2c%20pool1.CNhs10616.10011-101C2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel bladder, adult, pool1_CNhs10616_10011-101C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10011-101C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BladderAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BladderAdultPool1_CNhs10616_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2\ urlLabel FANTOM5 Details:\ BloodAdultPool1_CNhs11761_ctss_fwd BloodAdultPl1+ bigWig blood, adult, pool1_CNhs11761_10053-101G8_forward 0 3311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/blood%2c%20adult%2c%20pool1.CNhs11761.10053-101G8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel blood, adult, pool1_CNhs11761_10053-101G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10053-101G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BloodAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BloodAdultPool1_CNhs11761_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8\ urlLabel FANTOM5 Details:\ BloodAdultPool1_CNhs11761_tpm_fwd BloodAdultPl1+ bigWig blood, adult, pool1_CNhs11761_10053-101G8_forward 1 3311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/blood%2c%20adult%2c%20pool1.CNhs11761.10053-101G8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel blood, adult, pool1_CNhs11761_10053-101G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10053-101G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BloodAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BloodAdultPool1_CNhs11761_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8\ urlLabel FANTOM5 Details:\ BloodAdultPool1_CNhs11761_ctss_rev BloodAdultPl1- bigWig blood, adult, pool1_CNhs11761_10053-101G8_reverse 0 3312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/blood%2c%20adult%2c%20pool1.CNhs11761.10053-101G8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel blood, adult, pool1_CNhs11761_10053-101G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10053-101G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BloodAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BloodAdultPool1_CNhs11761_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8\ urlLabel FANTOM5 Details:\ BloodAdultPool1_CNhs11761_tpm_rev BloodAdultPl1- bigWig blood, adult, pool1_CNhs11761_10053-101G8_reverse 1 3312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/blood%2c%20adult%2c%20pool1.CNhs11761.10053-101G8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel blood, adult, pool1_CNhs11761_10053-101G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10053-101G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BloodAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BloodAdultPool1_CNhs11761_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8\ urlLabel FANTOM5 Details:\ BoneMarrowAdult_CNhs12845_ctss_fwd BoneMarrowAdult+ bigWig bone marrow, adult_CNhs12845_10192-103E3_forward 0 3313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/bone%20marrow%2c%20adult.CNhs12845.10192-103E3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel bone marrow, adult_CNhs12845_10192-103E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10192-103E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BoneMarrowAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BoneMarrowAdult_CNhs12845_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3\ urlLabel FANTOM5 Details:\ BoneMarrowAdult_CNhs12845_tpm_fwd BoneMarrowAdult+ bigWig bone marrow, adult_CNhs12845_10192-103E3_forward 1 3313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/bone%20marrow%2c%20adult.CNhs12845.10192-103E3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel bone marrow, adult_CNhs12845_10192-103E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10192-103E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BoneMarrowAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BoneMarrowAdult_CNhs12845_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3\ urlLabel FANTOM5 Details:\ BoneMarrowAdult_CNhs12845_ctss_rev BoneMarrowAdult- bigWig bone marrow, adult_CNhs12845_10192-103E3_reverse 0 3314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/bone%20marrow%2c%20adult.CNhs12845.10192-103E3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel bone marrow, adult_CNhs12845_10192-103E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10192-103E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BoneMarrowAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BoneMarrowAdult_CNhs12845_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3\ urlLabel FANTOM5 Details:\ BoneMarrowAdult_CNhs12845_tpm_rev BoneMarrowAdult- bigWig bone marrow, adult_CNhs12845_10192-103E3_reverse 1 3314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/bone%20marrow%2c%20adult.CNhs12845.10192-103E3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel bone marrow, adult_CNhs12845_10192-103E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10192-103E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BoneMarrowAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BoneMarrowAdult_CNhs12845_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3\ urlLabel FANTOM5 Details:\ BrainAdultDonor1_CNhs11796_ctss_fwd BrainAdultD1+ bigWig brain, adult, donor1_CNhs11796_10084-102B3_forward 0 3315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/brain%2c%20adult%2c%20donor1.CNhs11796.10084-102B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel brain, adult, donor1_CNhs11796_10084-102B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10084-102B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainAdultDonor1_CNhs11796_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3\ urlLabel FANTOM5 Details:\ BrainAdultDonor1_CNhs11796_tpm_fwd BrainAdultD1+ bigWig brain, adult, donor1_CNhs11796_10084-102B3_forward 1 3315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/brain%2c%20adult%2c%20donor1.CNhs11796.10084-102B3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel brain, adult, donor1_CNhs11796_10084-102B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10084-102B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainAdultDonor1_CNhs11796_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3\ urlLabel FANTOM5 Details:\ BrainAdultDonor1_CNhs11796_ctss_rev BrainAdultD1- bigWig brain, adult, donor1_CNhs11796_10084-102B3_reverse 0 3316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/brain%2c%20adult%2c%20donor1.CNhs11796.10084-102B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel brain, adult, donor1_CNhs11796_10084-102B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10084-102B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainAdultDonor1_CNhs11796_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3\ urlLabel FANTOM5 Details:\ BrainAdultDonor1_CNhs11796_tpm_rev BrainAdultD1- bigWig brain, adult, donor1_CNhs11796_10084-102B3_reverse 1 3316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/brain%2c%20adult%2c%20donor1.CNhs11796.10084-102B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel brain, adult, donor1_CNhs11796_10084-102B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10084-102B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainAdultDonor1_CNhs11796_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3\ urlLabel FANTOM5 Details:\ BrainAdultPool1_CNhs10617_ctss_fwd BrainAdultPl1+ bigWig brain, adult, pool1_CNhs10617_10012-101C3_forward 0 3317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/brain%2c%20adult%2c%20pool1.CNhs10617.10012-101C3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel brain, adult, pool1_CNhs10617_10012-101C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10012-101C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainAdultPool1_CNhs10617_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3\ urlLabel FANTOM5 Details:\ BrainAdultPool1_CNhs10617_tpm_fwd BrainAdultPl1+ bigWig brain, adult, pool1_CNhs10617_10012-101C3_forward 1 3317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/brain%2c%20adult%2c%20pool1.CNhs10617.10012-101C3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel brain, adult, pool1_CNhs10617_10012-101C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10012-101C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainAdultPool1_CNhs10617_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3\ urlLabel FANTOM5 Details:\ BrainAdultPool1_CNhs10617_ctss_rev BrainAdultPl1- bigWig brain, adult, pool1_CNhs10617_10012-101C3_reverse 0 3318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/brain%2c%20adult%2c%20pool1.CNhs10617.10012-101C3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel brain, adult, pool1_CNhs10617_10012-101C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10012-101C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainAdultPool1_CNhs10617_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3\ urlLabel FANTOM5 Details:\ BrainAdultPool1_CNhs10617_tpm_rev BrainAdultPl1- bigWig brain, adult, pool1_CNhs10617_10012-101C3_reverse 1 3318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/brain%2c%20adult%2c%20pool1.CNhs10617.10012-101C3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel brain, adult, pool1_CNhs10617_10012-101C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10012-101C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainAdultPool1_CNhs10617_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3\ urlLabel FANTOM5 Details:\ BrainFetalPool1_CNhs11797_ctss_fwd BrainFetalPl1+ bigWig brain, fetal, pool1_CNhs11797_10085-102B4_forward 0 3319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/brain%2c%20fetal%2c%20pool1.CNhs11797.10085-102B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel brain, fetal, pool1_CNhs11797_10085-102B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10085-102B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainFetalPool1_CNhs11797_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4\ urlLabel FANTOM5 Details:\ BrainFetalPool1_CNhs11797_tpm_fwd BrainFetalPl1+ bigWig brain, fetal, pool1_CNhs11797_10085-102B4_forward 1 3319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/brain%2c%20fetal%2c%20pool1.CNhs11797.10085-102B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel brain, fetal, pool1_CNhs11797_10085-102B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10085-102B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainFetalPool1_CNhs11797_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4\ urlLabel FANTOM5 Details:\ BrainFetalPool1_CNhs11797_ctss_rev BrainFetalPl1- bigWig brain, fetal, pool1_CNhs11797_10085-102B4_reverse 0 3320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/brain%2c%20fetal%2c%20pool1.CNhs11797.10085-102B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel brain, fetal, pool1_CNhs11797_10085-102B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10085-102B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainFetalPool1_CNhs11797_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4\ urlLabel FANTOM5 Details:\ BrainFetalPool1_CNhs11797_tpm_rev BrainFetalPl1- bigWig brain, fetal, pool1_CNhs11797_10085-102B4_reverse 1 3320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/brain%2c%20fetal%2c%20pool1.CNhs11797.10085-102B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel brain, fetal, pool1_CNhs11797_10085-102B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10085-102B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainFetalPool1_CNhs11797_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4\ urlLabel FANTOM5 Details:\ BreastAdultDonor1_CNhs11792_ctss_fwd BreastAdultD1+ bigWig breast, adult, donor1_CNhs11792_10080-102A8_forward 0 3321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/breast%2c%20adult%2c%20donor1.CNhs11792.10080-102A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel breast, adult, donor1_CNhs11792_10080-102A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10080-102A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BreastAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BreastAdultDonor1_CNhs11792_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8\ urlLabel FANTOM5 Details:\ BreastAdultDonor1_CNhs11792_tpm_fwd BreastAdultD1+ bigWig breast, adult, donor1_CNhs11792_10080-102A8_forward 1 3321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/breast%2c%20adult%2c%20donor1.CNhs11792.10080-102A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel breast, adult, donor1_CNhs11792_10080-102A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10080-102A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BreastAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BreastAdultDonor1_CNhs11792_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8\ urlLabel FANTOM5 Details:\ BreastAdultDonor1_CNhs11792_ctss_rev BreastAdultD1- bigWig breast, adult, donor1_CNhs11792_10080-102A8_reverse 0 3322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/breast%2c%20adult%2c%20donor1.CNhs11792.10080-102A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel breast, adult, donor1_CNhs11792_10080-102A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10080-102A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BreastAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BreastAdultDonor1_CNhs11792_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8\ urlLabel FANTOM5 Details:\ BreastAdultDonor1_CNhs11792_tpm_rev BreastAdultD1- bigWig breast, adult, donor1_CNhs11792_10080-102A8_reverse 1 3322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/breast%2c%20adult%2c%20donor1.CNhs11792.10080-102A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel breast, adult, donor1_CNhs11792_10080-102A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10080-102A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BreastAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BreastAdultDonor1_CNhs11792_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10196_CNhs13802_ctss_fwd CaudateNucleusAdultD10196+ bigWig caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_forward 0 3323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/caudate%20nucleus%20-%20adult%2c%20donor10196.CNhs13802.10177-103C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10177-103C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10196_CNhs13802_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10196_CNhs13802_tpm_fwd CaudateNucleusAdultD10196+ bigWig caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_forward 1 3323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/caudate%20nucleus%20-%20adult%2c%20donor10196.CNhs13802.10177-103C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10177-103C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10196_CNhs13802_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10196_CNhs13802_ctss_rev CaudateNucleusAdultD10196- bigWig caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_reverse 0 3324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/caudate%20nucleus%20-%20adult%2c%20donor10196.CNhs13802.10177-103C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10177-103C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10196_CNhs13802_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10196_CNhs13802_tpm_rev CaudateNucleusAdultD10196- bigWig caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_reverse 1 3324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/caudate%20nucleus%20-%20adult%2c%20donor10196.CNhs13802.10177-103C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10177-103C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10196_CNhs13802_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10252_CNhs12321_ctss_fwd CaudateNucleusAdultD10252+ bigWig caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_forward 0 3325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10252.CNhs12321.10164-103B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10164-103B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10252_CNhs12321_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10252_CNhs12321_tpm_fwd CaudateNucleusAdultD10252+ bigWig caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_forward 1 3325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10252.CNhs12321.10164-103B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10164-103B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10252_CNhs12321_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10252_CNhs12321_ctss_rev CaudateNucleusAdultD10252- bigWig caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_reverse 0 3326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10252.CNhs12321.10164-103B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10164-103B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10252_CNhs12321_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10252_CNhs12321_tpm_rev CaudateNucleusAdultD10252- bigWig caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_reverse 1 3326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10252.CNhs12321.10164-103B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10164-103B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10252_CNhs12321_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10258_CNhs14232_ctss_fwd CaudateNucleusAdultD10258+ bigWig caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_forward 0 3327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10258.CNhs14232.10379-105H1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10379-105H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10258_CNhs14232_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10258_CNhs14232_tpm_fwd CaudateNucleusAdultD10258+ bigWig caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_forward 1 3327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10258.CNhs14232.10379-105H1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10379-105H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10258_CNhs14232_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10258_CNhs14232_ctss_rev CaudateNucleusAdultD10258- bigWig caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_reverse 0 3328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10258.CNhs14232.10379-105H1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10379-105H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10258_CNhs14232_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10258_CNhs14232_tpm_rev CaudateNucleusAdultD10258- bigWig caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_reverse 1 3328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10258.CNhs14232.10379-105H1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10379-105H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10258_CNhs14232_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1\ urlLabel FANTOM5 Details:\ CaudateNucleusNewbornDonor10223_CNhs14071_ctss_fwd CaudateNucleusNbD10223+ bigWig caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_forward 0 3329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/caudate%20nucleus%2c%20newborn%2c%20donor10223.CNhs14071.10354-105E3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10354-105E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusNewbornDonor10223_CNhs14071_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3\ urlLabel FANTOM5 Details:\ CaudateNucleusNewbornDonor10223_CNhs14071_tpm_fwd CaudateNucleusNbD10223+ bigWig caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_forward 1 3329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/caudate%20nucleus%2c%20newborn%2c%20donor10223.CNhs14071.10354-105E3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10354-105E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusNewbornDonor10223_CNhs14071_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3\ urlLabel FANTOM5 Details:\ CaudateNucleusNewbornDonor10223_CNhs14071_ctss_rev CaudateNucleusNbD10223- bigWig caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_reverse 0 3330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/caudate%20nucleus%2c%20newborn%2c%20donor10223.CNhs14071.10354-105E3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10354-105E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusNewbornDonor10223_CNhs14071_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3\ urlLabel FANTOM5 Details:\ CaudateNucleusNewbornDonor10223_CNhs14071_tpm_rev CaudateNucleusNbD10223- bigWig caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_reverse 1 3330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/caudate%20nucleus%2c%20newborn%2c%20donor10223.CNhs14071.10354-105E3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10354-105E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusNewbornDonor10223_CNhs14071_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10196_CNhs13799_ctss_fwd CerebellumAdultD10196+ bigWig cerebellum - adult, donor10196_CNhs13799_10173-103C2_forward 0 3331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebellum%20-%20adult%2c%20donor10196.CNhs13799.10173-103C2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel cerebellum - adult, donor10196_CNhs13799_10173-103C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10173-103C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultDonor10196_CNhs13799_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10196_CNhs13799_tpm_fwd CerebellumAdultD10196+ bigWig cerebellum - adult, donor10196_CNhs13799_10173-103C2_forward 1 3331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebellum%20-%20adult%2c%20donor10196.CNhs13799.10173-103C2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel cerebellum - adult, donor10196_CNhs13799_10173-103C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10173-103C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultDonor10196_CNhs13799_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10196_CNhs13799_ctss_rev CerebellumAdultD10196- bigWig cerebellum - adult, donor10196_CNhs13799_10173-103C2_reverse 0 3332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebellum%20-%20adult%2c%20donor10196.CNhs13799.10173-103C2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel cerebellum - adult, donor10196_CNhs13799_10173-103C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10173-103C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultDonor10196_CNhs13799_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10196_CNhs13799_tpm_rev CerebellumAdultD10196- bigWig cerebellum - adult, donor10196_CNhs13799_10173-103C2_reverse 1 3332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebellum%20-%20adult%2c%20donor10196.CNhs13799.10173-103C2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel cerebellum - adult, donor10196_CNhs13799_10173-103C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10173-103C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultDonor10196_CNhs13799_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10252_CNhs12323_ctss_fwd CerebellumAdultD10252+ bigWig cerebellum, adult, donor10252_CNhs12323_10166-103B4_forward 0 3333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebellum%2c%20adult%2c%20donor10252.CNhs12323.10166-103B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel cerebellum, adult, donor10252_CNhs12323_10166-103B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10166-103B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultDonor10252_CNhs12323_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10252_CNhs12323_tpm_fwd CerebellumAdultD10252+ bigWig cerebellum, adult, donor10252_CNhs12323_10166-103B4_forward 1 3333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebellum%2c%20adult%2c%20donor10252.CNhs12323.10166-103B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel cerebellum, adult, donor10252_CNhs12323_10166-103B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10166-103B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultDonor10252_CNhs12323_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10252_CNhs12323_ctss_rev CerebellumAdultD10252- bigWig cerebellum, adult, donor10252_CNhs12323_10166-103B4_reverse 0 3334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebellum%2c%20adult%2c%20donor10252.CNhs12323.10166-103B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel cerebellum, adult, donor10252_CNhs12323_10166-103B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10166-103B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultDonor10252_CNhs12323_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10252_CNhs12323_tpm_rev CerebellumAdultD10252- bigWig cerebellum, adult, donor10252_CNhs12323_10166-103B4_reverse 1 3334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebellum%2c%20adult%2c%20donor10252.CNhs12323.10166-103B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel cerebellum, adult, donor10252_CNhs12323_10166-103B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10166-103B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultDonor10252_CNhs12323_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4\ urlLabel FANTOM5 Details:\ CerebellumAdultPool1_CNhs11795_ctss_fwd CerebellumAdultPl1+ bigWig cerebellum, adult, pool1_CNhs11795_10083-102B2_forward 0 3335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebellum%2c%20adult%2c%20pool1.CNhs11795.10083-102B2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel cerebellum, adult, pool1_CNhs11795_10083-102B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10083-102B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultPool1_CNhs11795_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2\ urlLabel FANTOM5 Details:\ CerebellumAdultPool1_CNhs11795_tpm_fwd CerebellumAdultPl1+ bigWig cerebellum, adult, pool1_CNhs11795_10083-102B2_forward 1 3335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebellum%2c%20adult%2c%20pool1.CNhs11795.10083-102B2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel cerebellum, adult, pool1_CNhs11795_10083-102B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10083-102B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultPool1_CNhs11795_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2\ urlLabel FANTOM5 Details:\ CerebellumAdultPool1_CNhs11795_ctss_rev CerebellumAdultPl1- bigWig cerebellum, adult, pool1_CNhs11795_10083-102B2_reverse 0 3336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebellum%2c%20adult%2c%20pool1.CNhs11795.10083-102B2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel cerebellum, adult, pool1_CNhs11795_10083-102B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10083-102B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultPool1_CNhs11795_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2\ urlLabel FANTOM5 Details:\ CerebellumAdultPool1_CNhs11795_tpm_rev CerebellumAdultPl1- bigWig cerebellum, adult, pool1_CNhs11795_10083-102B2_reverse 1 3336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebellum%2c%20adult%2c%20pool1.CNhs11795.10083-102B2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel cerebellum, adult, pool1_CNhs11795_10083-102B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10083-102B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultPool1_CNhs11795_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2\ urlLabel FANTOM5 Details:\ CerebellumNewbornDonor10223_CNhs14075_ctss_fwd CerebellumNbD10223+ bigWig cerebellum, newborn, donor10223_CNhs14075_10357-105E6_forward 0 3337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebellum%2c%20newborn%2c%20donor10223.CNhs14075.10357-105E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel cerebellum, newborn, donor10223_CNhs14075_10357-105E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10357-105E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumNewbornDonor10223_CNhs14075_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6\ urlLabel FANTOM5 Details:\ CerebellumNewbornDonor10223_CNhs14075_tpm_fwd CerebellumNbD10223+ bigWig cerebellum, newborn, donor10223_CNhs14075_10357-105E6_forward 1 3337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebellum%2c%20newborn%2c%20donor10223.CNhs14075.10357-105E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel cerebellum, newborn, donor10223_CNhs14075_10357-105E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10357-105E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumNewbornDonor10223_CNhs14075_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6\ urlLabel FANTOM5 Details:\ CerebellumNewbornDonor10223_CNhs14075_ctss_rev CerebellumNbD10223- bigWig cerebellum, newborn, donor10223_CNhs14075_10357-105E6_reverse 0 3338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebellum%2c%20newborn%2c%20donor10223.CNhs14075.10357-105E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel cerebellum, newborn, donor10223_CNhs14075_10357-105E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10357-105E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumNewbornDonor10223_CNhs14075_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6\ urlLabel FANTOM5 Details:\ CerebellumNewbornDonor10223_CNhs14075_tpm_rev CerebellumNbD10223- bigWig cerebellum, newborn, donor10223_CNhs14075_10357-105E6_reverse 1 3338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebellum%2c%20newborn%2c%20donor10223.CNhs14075.10357-105E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel cerebellum, newborn, donor10223_CNhs14075_10357-105E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10357-105E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumNewbornDonor10223_CNhs14075_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6\ urlLabel FANTOM5 Details:\ CerebralMeningesAdult_CNhs12840_ctss_fwd CerebralMeningesAdult+ bigWig cerebral meninges, adult_CNhs12840_10188-103D8_forward 0 3339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebral%20meninges%2c%20adult.CNhs12840.10188-103D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel cerebral meninges, adult_CNhs12840_10188-103D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10188-103D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebralMeningesAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebralMeningesAdult_CNhs12840_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8\ urlLabel FANTOM5 Details:\ CerebralMeningesAdult_CNhs12840_tpm_fwd CerebralMeningesAdult+ bigWig cerebral meninges, adult_CNhs12840_10188-103D8_forward 1 3339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebral%20meninges%2c%20adult.CNhs12840.10188-103D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel cerebral meninges, adult_CNhs12840_10188-103D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10188-103D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebralMeningesAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebralMeningesAdult_CNhs12840_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8\ urlLabel FANTOM5 Details:\ CerebralMeningesAdult_CNhs12840_ctss_rev CerebralMeningesAdult- bigWig cerebral meninges, adult_CNhs12840_10188-103D8_reverse 0 3340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebral%20meninges%2c%20adult.CNhs12840.10188-103D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel cerebral meninges, adult_CNhs12840_10188-103D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10188-103D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebralMeningesAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebralMeningesAdult_CNhs12840_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8\ urlLabel FANTOM5 Details:\ CerebralMeningesAdult_CNhs12840_tpm_rev CerebralMeningesAdult- bigWig cerebral meninges, adult_CNhs12840_10188-103D8_reverse 1 3340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebral%20meninges%2c%20adult.CNhs12840.10188-103D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel cerebral meninges, adult_CNhs12840_10188-103D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10188-103D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebralMeningesAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebralMeningesAdult_CNhs12840_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8\ urlLabel FANTOM5 Details:\ CerebrospinalFluidDonor2_CNhs13437_ctss_fwd CerebrospinalFluidD2+ bigWig cerebrospinal fluid, donor2_CNhs13437_10294-104G6_forward 0 3341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebrospinal%20fluid%2c%20donor2.CNhs13437.10294-104G6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel cerebrospinal fluid, donor2_CNhs13437_10294-104G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10294-104G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebrospinalFluidD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebrospinalFluidDonor2_CNhs13437_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6\ urlLabel FANTOM5 Details:\ CerebrospinalFluidDonor2_CNhs13437_tpm_fwd CerebrospinalFluidD2+ bigWig cerebrospinal fluid, donor2_CNhs13437_10294-104G6_forward 1 3341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebrospinal%20fluid%2c%20donor2.CNhs13437.10294-104G6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel cerebrospinal fluid, donor2_CNhs13437_10294-104G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10294-104G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebrospinalFluidD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebrospinalFluidDonor2_CNhs13437_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6\ urlLabel FANTOM5 Details:\ CerebrospinalFluidDonor2_CNhs13437_ctss_rev CerebrospinalFluidD2- bigWig cerebrospinal fluid, donor2_CNhs13437_10294-104G6_reverse 0 3342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebrospinal%20fluid%2c%20donor2.CNhs13437.10294-104G6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel cerebrospinal fluid, donor2_CNhs13437_10294-104G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10294-104G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebrospinalFluidD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebrospinalFluidDonor2_CNhs13437_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6\ urlLabel FANTOM5 Details:\ CerebrospinalFluidDonor2_CNhs13437_tpm_rev CerebrospinalFluidD2- bigWig cerebrospinal fluid, donor2_CNhs13437_10294-104G6_reverse 1 3342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cerebrospinal%20fluid%2c%20donor2.CNhs13437.10294-104G6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel cerebrospinal fluid, donor2_CNhs13437_10294-104G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10294-104G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebrospinalFluidD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebrospinalFluidDonor2_CNhs13437_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6\ urlLabel FANTOM5 Details:\ CervixAdultPool1_CNhs10618_ctss_fwd CervixAdultPl1+ bigWig cervix, adult, pool1_CNhs10618_10013-101C4_forward 0 3343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cervix%2c%20adult%2c%20pool1.CNhs10618.10013-101C4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel cervix, adult, pool1_CNhs10618_10013-101C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10013-101C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CervixAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CervixAdultPool1_CNhs10618_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4\ urlLabel FANTOM5 Details:\ CervixAdultPool1_CNhs10618_tpm_fwd CervixAdultPl1+ bigWig cervix, adult, pool1_CNhs10618_10013-101C4_forward 1 3343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cervix%2c%20adult%2c%20pool1.CNhs10618.10013-101C4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel cervix, adult, pool1_CNhs10618_10013-101C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10013-101C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CervixAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CervixAdultPool1_CNhs10618_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4\ urlLabel FANTOM5 Details:\ CervixAdultPool1_CNhs10618_ctss_rev CervixAdultPl1- bigWig cervix, adult, pool1_CNhs10618_10013-101C4_reverse 0 3344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cervix%2c%20adult%2c%20pool1.CNhs10618.10013-101C4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel cervix, adult, pool1_CNhs10618_10013-101C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10013-101C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CervixAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CervixAdultPool1_CNhs10618_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4\ urlLabel FANTOM5 Details:\ CervixAdultPool1_CNhs10618_tpm_rev CervixAdultPl1- bigWig cervix, adult, pool1_CNhs10618_10013-101C4_reverse 1 3344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cervix%2c%20adult%2c%20pool1.CNhs10618.10013-101C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel cervix, adult, pool1_CNhs10618_10013-101C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10013-101C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CervixAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CervixAdultPool1_CNhs10618_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4\ urlLabel FANTOM5 Details:\ ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_ctss_fwd ClontechUniversalReferencePl1+ bigWig Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_forward 0 3345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Clontech%20Human%20Universal%20Reference%20Total%20RNA%2c%20pool1.CNhs10608.10000-101A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10000-101A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ClontechUniversalReferencePl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1\ urlLabel FANTOM5 Details:\ ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_tpm_fwd ClontechUniversalReferencePl1+ bigWig Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_forward 1 3345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Clontech%20Human%20Universal%20Reference%20Total%20RNA%2c%20pool1.CNhs10608.10000-101A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10000-101A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ClontechUniversalReferencePl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1\ urlLabel FANTOM5 Details:\ ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_ctss_rev ClontechUniversalReferencePl1- bigWig Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_reverse 0 3346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Clontech%20Human%20Universal%20Reference%20Total%20RNA%2c%20pool1.CNhs10608.10000-101A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10000-101A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ClontechUniversalReferencePl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1\ urlLabel FANTOM5 Details:\ ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_tpm_rev ClontechUniversalReferencePl1- bigWig Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_reverse 1 3346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Clontech%20Human%20Universal%20Reference%20Total%20RNA%2c%20pool1.CNhs10608.10000-101A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10000-101A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ClontechUniversalReferencePl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1\ urlLabel FANTOM5 Details:\ ColonAdultDonor1_CNhs11794_ctss_fwd ColonAdultD1+ bigWig colon, adult, donor1_CNhs11794_10082-102B1_forward 0 3347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%2c%20adult%2c%20donor1.CNhs11794.10082-102B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel colon, adult, donor1_CNhs11794_10082-102B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10082-102B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonAdultDonor1_CNhs11794_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1\ urlLabel FANTOM5 Details:\ ColonAdultDonor1_CNhs11794_tpm_fwd ColonAdultD1+ bigWig colon, adult, donor1_CNhs11794_10082-102B1_forward 1 3347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%2c%20adult%2c%20donor1.CNhs11794.10082-102B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel colon, adult, donor1_CNhs11794_10082-102B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10082-102B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonAdultDonor1_CNhs11794_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1\ urlLabel FANTOM5 Details:\ ColonAdultDonor1_CNhs11794_ctss_rev ColonAdultD1- bigWig colon, adult, donor1_CNhs11794_10082-102B1_reverse 0 3348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%2c%20adult%2c%20donor1.CNhs11794.10082-102B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel colon, adult, donor1_CNhs11794_10082-102B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10082-102B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonAdultDonor1_CNhs11794_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1\ urlLabel FANTOM5 Details:\ ColonAdultDonor1_CNhs11794_tpm_rev ColonAdultD1- bigWig colon, adult, donor1_CNhs11794_10082-102B1_reverse 1 3348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%2c%20adult%2c%20donor1.CNhs11794.10082-102B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel colon, adult, donor1_CNhs11794_10082-102B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10082-102B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonAdultDonor1_CNhs11794_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1\ urlLabel FANTOM5 Details:\ ColonAdultPool1_CNhs10619_ctss_fwd ColonAdultPl1+ bigWig colon, adult, pool1_CNhs10619_10014-101C5_forward 0 3349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%2c%20adult%2c%20pool1.CNhs10619.10014-101C5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel colon, adult, pool1_CNhs10619_10014-101C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10014-101C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonAdultPool1_CNhs10619_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5\ urlLabel FANTOM5 Details:\ ColonAdultPool1_CNhs10619_tpm_fwd ColonAdultPl1+ bigWig colon, adult, pool1_CNhs10619_10014-101C5_forward 1 3349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%2c%20adult%2c%20pool1.CNhs10619.10014-101C5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel colon, adult, pool1_CNhs10619_10014-101C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10014-101C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonAdultPool1_CNhs10619_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5\ urlLabel FANTOM5 Details:\ ColonAdultPool1_CNhs10619_ctss_rev ColonAdultPl1- bigWig colon, adult, pool1_CNhs10619_10014-101C5_reverse 0 3350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%2c%20adult%2c%20pool1.CNhs10619.10014-101C5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel colon, adult, pool1_CNhs10619_10014-101C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10014-101C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonAdultPool1_CNhs10619_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5\ urlLabel FANTOM5 Details:\ ColonAdultPool1_CNhs10619_tpm_rev ColonAdultPl1- bigWig colon, adult, pool1_CNhs10619_10014-101C5_reverse 1 3350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%2c%20adult%2c%20pool1.CNhs10619.10014-101C5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel colon, adult, pool1_CNhs10619_10014-101C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10014-101C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonAdultPool1_CNhs10619_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5\ urlLabel FANTOM5 Details:\ ColonFetalDonor1_CNhs11780_ctss_fwd ColonFetalD1+ bigWig colon, fetal, donor1_CNhs11780_10070-101I7_forward 0 3351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%2c%20fetal%2c%20donor1.CNhs11780.10070-101I7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel colon, fetal, donor1_CNhs11780_10070-101I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10070-101I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonFetalDonor1_CNhs11780_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7\ urlLabel FANTOM5 Details:\ ColonFetalDonor1_CNhs11780_tpm_fwd ColonFetalD1+ bigWig colon, fetal, donor1_CNhs11780_10070-101I7_forward 1 3351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%2c%20fetal%2c%20donor1.CNhs11780.10070-101I7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel colon, fetal, donor1_CNhs11780_10070-101I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10070-101I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonFetalDonor1_CNhs11780_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7\ urlLabel FANTOM5 Details:\ ColonFetalDonor1_CNhs11780_ctss_rev ColonFetalD1- bigWig colon, fetal, donor1_CNhs11780_10070-101I7_reverse 0 3352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%2c%20fetal%2c%20donor1.CNhs11780.10070-101I7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel colon, fetal, donor1_CNhs11780_10070-101I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10070-101I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonFetalDonor1_CNhs11780_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7\ urlLabel FANTOM5 Details:\ ColonFetalDonor1_CNhs11780_tpm_rev ColonFetalD1- bigWig colon, fetal, donor1_CNhs11780_10070-101I7_reverse 1 3352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/colon%2c%20fetal%2c%20donor1.CNhs11780.10070-101I7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel colon, fetal, donor1_CNhs11780_10070-101I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10070-101I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonFetalDonor1_CNhs11780_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7\ urlLabel FANTOM5 Details:\ CorpusCallosumAdultPool1_CNhs10649_ctss_fwd CorpusCallosumAdultPl1+ bigWig corpus callosum, adult, pool1_CNhs10649_10042-101F6_forward 0 3353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/corpus%20callosum%2c%20adult%2c%20pool1.CNhs10649.10042-101F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel corpus callosum, adult, pool1_CNhs10649_10042-101F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10042-101F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CorpusCallosumAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CorpusCallosumAdultPool1_CNhs10649_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6\ urlLabel FANTOM5 Details:\ CorpusCallosumAdultPool1_CNhs10649_tpm_fwd CorpusCallosumAdultPl1+ bigWig corpus callosum, adult, pool1_CNhs10649_10042-101F6_forward 1 3353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/corpus%20callosum%2c%20adult%2c%20pool1.CNhs10649.10042-101F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel corpus callosum, adult, pool1_CNhs10649_10042-101F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10042-101F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CorpusCallosumAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CorpusCallosumAdultPool1_CNhs10649_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6\ urlLabel FANTOM5 Details:\ CorpusCallosumAdultPool1_CNhs10649_ctss_rev CorpusCallosumAdultPl1- bigWig corpus callosum, adult, pool1_CNhs10649_10042-101F6_reverse 0 3354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/corpus%20callosum%2c%20adult%2c%20pool1.CNhs10649.10042-101F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel corpus callosum, adult, pool1_CNhs10649_10042-101F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10042-101F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CorpusCallosumAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CorpusCallosumAdultPool1_CNhs10649_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6\ urlLabel FANTOM5 Details:\ CorpusCallosumAdultPool1_CNhs10649_tpm_rev CorpusCallosumAdultPl1- bigWig corpus callosum, adult, pool1_CNhs10649_10042-101F6_reverse 1 3354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/corpus%20callosum%2c%20adult%2c%20pool1.CNhs10649.10042-101F6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel corpus callosum, adult, pool1_CNhs10649_10042-101F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10042-101F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CorpusCallosumAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CorpusCallosumAdultPool1_CNhs10649_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6\ urlLabel FANTOM5 Details:\ CruciateLigamentDonor2_CNhs13439_ctss_fwd CruciateLigamentD2+ bigWig cruciate ligament, donor2_CNhs13439_10295-104G7_forward 0 3355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cruciate%20ligament%2c%20donor2.CNhs13439.10295-104G7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel cruciate ligament, donor2_CNhs13439_10295-104G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10295-104G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CruciateLigamentD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CruciateLigamentDonor2_CNhs13439_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7\ urlLabel FANTOM5 Details:\ CruciateLigamentDonor2_CNhs13439_tpm_fwd CruciateLigamentD2+ bigWig cruciate ligament, donor2_CNhs13439_10295-104G7_forward 1 3355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cruciate%20ligament%2c%20donor2.CNhs13439.10295-104G7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel cruciate ligament, donor2_CNhs13439_10295-104G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10295-104G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CruciateLigamentD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CruciateLigamentDonor2_CNhs13439_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7\ urlLabel FANTOM5 Details:\ CruciateLigamentDonor2_CNhs13439_ctss_rev CruciateLigamentD2- bigWig cruciate ligament, donor2_CNhs13439_10295-104G7_reverse 0 3356 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cruciate%20ligament%2c%20donor2.CNhs13439.10295-104G7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel cruciate ligament, donor2_CNhs13439_10295-104G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10295-104G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CruciateLigamentD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CruciateLigamentDonor2_CNhs13439_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7\ urlLabel FANTOM5 Details:\ CruciateLigamentDonor2_CNhs13439_tpm_rev CruciateLigamentD2- bigWig cruciate ligament, donor2_CNhs13439_10295-104G7_reverse 1 3356 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/cruciate%20ligament%2c%20donor2.CNhs13439.10295-104G7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel cruciate ligament, donor2_CNhs13439_10295-104G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10295-104G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CruciateLigamentD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CruciateLigamentDonor2_CNhs13439_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7\ urlLabel FANTOM5 Details:\ DiaphragmFetalDonor1_CNhs11779_ctss_fwd DiaphragmFetalD1+ bigWig diaphragm, fetal, donor1_CNhs11779_10069-101I6_forward 0 3357 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/diaphragm%2c%20fetal%2c%20donor1.CNhs11779.10069-101I6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel diaphragm, fetal, donor1_CNhs11779_10069-101I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10069-101I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DiaphragmFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DiaphragmFetalDonor1_CNhs11779_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6\ urlLabel FANTOM5 Details:\ DiaphragmFetalDonor1_CNhs11779_tpm_fwd DiaphragmFetalD1+ bigWig diaphragm, fetal, donor1_CNhs11779_10069-101I6_forward 1 3357 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/diaphragm%2c%20fetal%2c%20donor1.CNhs11779.10069-101I6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel diaphragm, fetal, donor1_CNhs11779_10069-101I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10069-101I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DiaphragmFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DiaphragmFetalDonor1_CNhs11779_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6\ urlLabel FANTOM5 Details:\ DiaphragmFetalDonor1_CNhs11779_ctss_rev DiaphragmFetalD1- bigWig diaphragm, fetal, donor1_CNhs11779_10069-101I6_reverse 0 3358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/diaphragm%2c%20fetal%2c%20donor1.CNhs11779.10069-101I6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel diaphragm, fetal, donor1_CNhs11779_10069-101I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10069-101I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DiaphragmFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DiaphragmFetalDonor1_CNhs11779_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6\ urlLabel FANTOM5 Details:\ DiaphragmFetalDonor1_CNhs11779_tpm_rev DiaphragmFetalD1- bigWig diaphragm, fetal, donor1_CNhs11779_10069-101I6_reverse 1 3358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/diaphragm%2c%20fetal%2c%20donor1.CNhs11779.10069-101I6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel diaphragm, fetal, donor1_CNhs11779_10069-101I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10069-101I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DiaphragmFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DiaphragmFetalDonor1_CNhs11779_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6\ urlLabel FANTOM5 Details:\ DiencephalonAdult_CNhs12610_ctss_fwd DiencephalonAdult+ bigWig diencephalon, adult_CNhs12610_10193-103E4_forward 0 3359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/diencephalon%2c%20adult.CNhs12610.10193-103E4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel diencephalon, adult_CNhs12610_10193-103E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10193-103E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DiencephalonAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DiencephalonAdult_CNhs12610_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4\ urlLabel FANTOM5 Details:\ DiencephalonAdult_CNhs12610_tpm_fwd DiencephalonAdult+ bigWig diencephalon, adult_CNhs12610_10193-103E4_forward 1 3359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/diencephalon%2c%20adult.CNhs12610.10193-103E4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel diencephalon, adult_CNhs12610_10193-103E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10193-103E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DiencephalonAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DiencephalonAdult_CNhs12610_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4\ urlLabel FANTOM5 Details:\ DiencephalonAdult_CNhs12610_ctss_rev DiencephalonAdult- bigWig diencephalon, adult_CNhs12610_10193-103E4_reverse 0 3360 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/diencephalon%2c%20adult.CNhs12610.10193-103E4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel diencephalon, adult_CNhs12610_10193-103E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10193-103E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DiencephalonAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DiencephalonAdult_CNhs12610_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4\ urlLabel FANTOM5 Details:\ DiencephalonAdult_CNhs12610_tpm_rev DiencephalonAdult- bigWig diencephalon, adult_CNhs12610_10193-103E4_reverse 1 3360 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/diencephalon%2c%20adult.CNhs12610.10193-103E4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel diencephalon, adult_CNhs12610_10193-103E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10193-103E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DiencephalonAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DiencephalonAdult_CNhs12610_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4\ urlLabel FANTOM5 Details:\ DuctusDeferensAdult_CNhs12846_ctss_fwd DuctusDeferensAdult+ bigWig ductus deferens, adult_CNhs12846_10196-103E7_forward 0 3361 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ductus%20deferens%2c%20adult.CNhs12846.10196-103E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ductus deferens, adult_CNhs12846_10196-103E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10196-103E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuctusDeferensAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuctusDeferensAdult_CNhs12846_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7\ urlLabel FANTOM5 Details:\ DuctusDeferensAdult_CNhs12846_tpm_fwd DuctusDeferensAdult+ bigWig ductus deferens, adult_CNhs12846_10196-103E7_forward 1 3361 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ductus%20deferens%2c%20adult.CNhs12846.10196-103E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ductus deferens, adult_CNhs12846_10196-103E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10196-103E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuctusDeferensAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuctusDeferensAdult_CNhs12846_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7\ urlLabel FANTOM5 Details:\ DuctusDeferensAdult_CNhs12846_ctss_rev DuctusDeferensAdult- bigWig ductus deferens, adult_CNhs12846_10196-103E7_reverse 0 3362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ductus%20deferens%2c%20adult.CNhs12846.10196-103E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ductus deferens, adult_CNhs12846_10196-103E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10196-103E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuctusDeferensAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuctusDeferensAdult_CNhs12846_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7\ urlLabel FANTOM5 Details:\ DuctusDeferensAdult_CNhs12846_tpm_rev DuctusDeferensAdult- bigWig ductus deferens, adult_CNhs12846_10196-103E7_reverse 1 3362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ductus%20deferens%2c%20adult.CNhs12846.10196-103E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ductus deferens, adult_CNhs12846_10196-103E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10196-103E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuctusDeferensAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuctusDeferensAdult_CNhs12846_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep1_CNhs11781_ctss_fwd DuodenumFetalD1Tr1+ bigWig duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_forward 0 3363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11781.10071-101I8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuodenumFetalD1Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuodenumFetalDonor1TechRep1_CNhs11781_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep1_CNhs11781_tpm_fwd DuodenumFetalD1Tr1+ bigWig duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_forward 1 3363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11781.10071-101I8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuodenumFetalD1Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuodenumFetalDonor1TechRep1_CNhs11781_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep1_CNhs11781_ctss_rev DuodenumFetalD1Tr1- bigWig duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_reverse 0 3364 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11781.10071-101I8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuodenumFetalD1Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuodenumFetalDonor1TechRep1_CNhs11781_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep1_CNhs11781_tpm_rev DuodenumFetalD1Tr1- bigWig duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_reverse 1 3364 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11781.10071-101I8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuodenumFetalD1Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuodenumFetalDonor1TechRep1_CNhs11781_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep2_CNhs12997_ctss_fwd DuodenumFetalD1Tr2+ bigWig duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_forward 0 3365 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12997.10071-101I8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuodenumFetalD1Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuodenumFetalDonor1TechRep2_CNhs12997_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep2_CNhs12997_tpm_fwd DuodenumFetalD1Tr2+ bigWig duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_forward 1 3365 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12997.10071-101I8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuodenumFetalD1Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuodenumFetalDonor1TechRep2_CNhs12997_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep2_CNhs12997_ctss_rev DuodenumFetalD1Tr2- bigWig duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_reverse 0 3366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12997.10071-101I8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuodenumFetalD1Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuodenumFetalDonor1TechRep2_CNhs12997_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep2_CNhs12997_tpm_rev DuodenumFetalD1Tr2- bigWig duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_reverse 1 3366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12997.10071-101I8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuodenumFetalD1Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuodenumFetalDonor1TechRep2_CNhs12997_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuraMaterAdultDonor1_CNhs10648_ctss_fwd DuraMaterAdultD1+ bigWig dura mater, adult, donor1_CNhs10648_10041-101F5_forward 0 3367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/dura%20mater%2c%20adult%2c%20donor1.CNhs10648.10041-101F5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel dura mater, adult, donor1_CNhs10648_10041-101F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10041-101F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuraMaterAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuraMaterAdultDonor1_CNhs10648_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5\ urlLabel FANTOM5 Details:\ DuraMaterAdultDonor1_CNhs10648_tpm_fwd DuraMaterAdultD1+ bigWig dura mater, adult, donor1_CNhs10648_10041-101F5_forward 1 3367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/dura%20mater%2c%20adult%2c%20donor1.CNhs10648.10041-101F5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel dura mater, adult, donor1_CNhs10648_10041-101F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10041-101F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuraMaterAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuraMaterAdultDonor1_CNhs10648_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5\ urlLabel FANTOM5 Details:\ DuraMaterAdultDonor1_CNhs10648_ctss_rev DuraMaterAdultD1- bigWig dura mater, adult, donor1_CNhs10648_10041-101F5_reverse 0 3368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/dura%20mater%2c%20adult%2c%20donor1.CNhs10648.10041-101F5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel dura mater, adult, donor1_CNhs10648_10041-101F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10041-101F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuraMaterAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuraMaterAdultDonor1_CNhs10648_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5\ urlLabel FANTOM5 Details:\ DuraMaterAdultDonor1_CNhs10648_tpm_rev DuraMaterAdultD1- bigWig dura mater, adult, donor1_CNhs10648_10041-101F5_reverse 1 3368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/dura%20mater%2c%20adult%2c%20donor1.CNhs10648.10041-101F5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel dura mater, adult, donor1_CNhs10648_10041-101F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10041-101F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuraMaterAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuraMaterAdultDonor1_CNhs10648_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5\ urlLabel FANTOM5 Details:\ EpididymisAdult_CNhs12847_ctss_fwd EpididymisAdult+ bigWig epididymis, adult_CNhs12847_10197-103E8_forward 0 3369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epididymis%2c%20adult.CNhs12847.10197-103E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel epididymis, adult_CNhs12847_10197-103E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10197-103E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EpididymisAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EpididymisAdult_CNhs12847_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8\ urlLabel FANTOM5 Details:\ EpididymisAdult_CNhs12847_tpm_fwd EpididymisAdult+ bigWig epididymis, adult_CNhs12847_10197-103E8_forward 1 3369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epididymis%2c%20adult.CNhs12847.10197-103E8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel epididymis, adult_CNhs12847_10197-103E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10197-103E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EpididymisAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EpididymisAdult_CNhs12847_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8\ urlLabel FANTOM5 Details:\ EpididymisAdult_CNhs12847_ctss_rev EpididymisAdult- bigWig epididymis, adult_CNhs12847_10197-103E8_reverse 0 3370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epididymis%2c%20adult.CNhs12847.10197-103E8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel epididymis, adult_CNhs12847_10197-103E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10197-103E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EpididymisAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EpididymisAdult_CNhs12847_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8\ urlLabel FANTOM5 Details:\ EpididymisAdult_CNhs12847_tpm_rev EpididymisAdult- bigWig epididymis, adult_CNhs12847_10197-103E8_reverse 1 3370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/epididymis%2c%20adult.CNhs12847.10197-103E8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel epididymis, adult_CNhs12847_10197-103E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10197-103E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EpididymisAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EpididymisAdult_CNhs12847_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8\ urlLabel FANTOM5 Details:\ EsophagusAdultPool1_CNhs10620_ctss_fwd EsophagusAdultPl1+ bigWig esophagus, adult, pool1_CNhs10620_10015-101C6_forward 0 3371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/esophagus%2c%20adult%2c%20pool1.CNhs10620.10015-101C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel esophagus, adult, pool1_CNhs10620_10015-101C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10015-101C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EsophagusAdultPool1_CNhs10620_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6\ urlLabel FANTOM5 Details:\ EsophagusAdultPool1_CNhs10620_tpm_fwd EsophagusAdultPl1+ bigWig esophagus, adult, pool1_CNhs10620_10015-101C6_forward 1 3371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/esophagus%2c%20adult%2c%20pool1.CNhs10620.10015-101C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel esophagus, adult, pool1_CNhs10620_10015-101C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10015-101C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EsophagusAdultPool1_CNhs10620_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6\ urlLabel FANTOM5 Details:\ EsophagusAdultPool1_CNhs10620_ctss_rev EsophagusAdultPl1- bigWig esophagus, adult, pool1_CNhs10620_10015-101C6_reverse 0 3372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/esophagus%2c%20adult%2c%20pool1.CNhs10620.10015-101C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel esophagus, adult, pool1_CNhs10620_10015-101C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10015-101C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EsophagusAdultPool1_CNhs10620_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6\ urlLabel FANTOM5 Details:\ EsophagusAdultPool1_CNhs10620_tpm_rev EsophagusAdultPl1- bigWig esophagus, adult, pool1_CNhs10620_10015-101C6_reverse 1 3372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/esophagus%2c%20adult%2c%20pool1.CNhs10620.10015-101C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel esophagus, adult, pool1_CNhs10620_10015-101C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10015-101C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EsophagusAdultPool1_CNhs10620_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6\ urlLabel FANTOM5 Details:\ EyeFetalDonor1_CNhs11762_ctss_fwd EyeFetalD1+ bigWig eye, fetal, donor1_CNhs11762_10054-101G9_forward 0 3373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%2c%20fetal%2c%20donor1.CNhs11762.10054-101G9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel eye, fetal, donor1_CNhs11762_10054-101G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10054-101G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeFetalDonor1_CNhs11762_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9\ urlLabel FANTOM5 Details:\ EyeFetalDonor1_CNhs11762_tpm_fwd EyeFetalD1+ bigWig eye, fetal, donor1_CNhs11762_10054-101G9_forward 1 3373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%2c%20fetal%2c%20donor1.CNhs11762.10054-101G9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel eye, fetal, donor1_CNhs11762_10054-101G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10054-101G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeFetalDonor1_CNhs11762_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9\ urlLabel FANTOM5 Details:\ EyeFetalDonor1_CNhs11762_ctss_rev EyeFetalD1- bigWig eye, fetal, donor1_CNhs11762_10054-101G9_reverse 0 3374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%2c%20fetal%2c%20donor1.CNhs11762.10054-101G9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel eye, fetal, donor1_CNhs11762_10054-101G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10054-101G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeFetalDonor1_CNhs11762_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9\ urlLabel FANTOM5 Details:\ EyeFetalDonor1_CNhs11762_tpm_rev EyeFetalD1- bigWig eye, fetal, donor1_CNhs11762_10054-101G9_reverse 1 3374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%2c%20fetal%2c%20donor1.CNhs11762.10054-101G9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel eye, fetal, donor1_CNhs11762_10054-101G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10054-101G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeFetalDonor1_CNhs11762_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9\ urlLabel FANTOM5 Details:\ EyeMuscleInferiorRectusDonor1_CNhs13444_ctss_fwd EyeMuscleInferiorRectusD1+ bigWig eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_forward 0 3375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20muscle%20inferior%20rectus%2c%20donor1.CNhs13444.10272-104E2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10272-104E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleInferiorRectusD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleInferiorRectusDonor1_CNhs13444_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2\ urlLabel FANTOM5 Details:\ EyeMuscleInferiorRectusDonor1_CNhs13444_tpm_fwd EyeMuscleInferiorRectusD1+ bigWig eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_forward 1 3375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20muscle%20inferior%20rectus%2c%20donor1.CNhs13444.10272-104E2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10272-104E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleInferiorRectusD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleInferiorRectusDonor1_CNhs13444_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2\ urlLabel FANTOM5 Details:\ EyeMuscleInferiorRectusDonor1_CNhs13444_ctss_rev EyeMuscleInferiorRectusD1- bigWig eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_reverse 0 3376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20muscle%20inferior%20rectus%2c%20donor1.CNhs13444.10272-104E2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10272-104E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleInferiorRectusD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleInferiorRectusDonor1_CNhs13444_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2\ urlLabel FANTOM5 Details:\ EyeMuscleInferiorRectusDonor1_CNhs13444_tpm_rev EyeMuscleInferiorRectusD1- bigWig eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_reverse 1 3376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20muscle%20inferior%20rectus%2c%20donor1.CNhs13444.10272-104E2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10272-104E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleInferiorRectusD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleInferiorRectusDonor1_CNhs13444_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2\ urlLabel FANTOM5 Details:\ EyeMuscleLateralDonor2_CNhs13442_ctss_fwd EyeMuscleLateralD2+ bigWig eye - muscle lateral, donor2_CNhs13442_10298-104H1_forward 0 3377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20muscle%20lateral%2c%20donor2.CNhs13442.10298-104H1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel eye - muscle lateral, donor2_CNhs13442_10298-104H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10298-104H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleLateralD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleLateralDonor2_CNhs13442_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1\ urlLabel FANTOM5 Details:\ EyeMuscleLateralDonor2_CNhs13442_tpm_fwd EyeMuscleLateralD2+ bigWig eye - muscle lateral, donor2_CNhs13442_10298-104H1_forward 1 3377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20muscle%20lateral%2c%20donor2.CNhs13442.10298-104H1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel eye - muscle lateral, donor2_CNhs13442_10298-104H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10298-104H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleLateralD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleLateralDonor2_CNhs13442_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1\ urlLabel FANTOM5 Details:\ EyeMuscleLateralDonor2_CNhs13442_ctss_rev EyeMuscleLateralD2- bigWig eye - muscle lateral, donor2_CNhs13442_10298-104H1_reverse 0 3378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20muscle%20lateral%2c%20donor2.CNhs13442.10298-104H1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel eye - muscle lateral, donor2_CNhs13442_10298-104H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10298-104H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleLateralD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleLateralDonor2_CNhs13442_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1\ urlLabel FANTOM5 Details:\ EyeMuscleLateralDonor2_CNhs13442_tpm_rev EyeMuscleLateralD2- bigWig eye - muscle lateral, donor2_CNhs13442_10298-104H1_reverse 1 3378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20muscle%20lateral%2c%20donor2.CNhs13442.10298-104H1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel eye - muscle lateral, donor2_CNhs13442_10298-104H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10298-104H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleLateralD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleLateralDonor2_CNhs13442_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1\ urlLabel FANTOM5 Details:\ EyeMuscleMedialDonor2_CNhs13443_ctss_fwd EyeMuscleMedialD2+ bigWig eye - muscle medial, donor2_CNhs13443_10299-104H2_forward 0 3379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20muscle%20medial%2c%20donor2.CNhs13443.10299-104H2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel eye - muscle medial, donor2_CNhs13443_10299-104H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10299-104H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleMedialD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleMedialDonor2_CNhs13443_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2\ urlLabel FANTOM5 Details:\ EyeMuscleMedialDonor2_CNhs13443_tpm_fwd EyeMuscleMedialD2+ bigWig eye - muscle medial, donor2_CNhs13443_10299-104H2_forward 1 3379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20muscle%20medial%2c%20donor2.CNhs13443.10299-104H2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel eye - muscle medial, donor2_CNhs13443_10299-104H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10299-104H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleMedialD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleMedialDonor2_CNhs13443_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2\ urlLabel FANTOM5 Details:\ EyeMuscleMedialDonor2_CNhs13443_ctss_rev EyeMuscleMedialD2- bigWig eye - muscle medial, donor2_CNhs13443_10299-104H2_reverse 0 3380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20muscle%20medial%2c%20donor2.CNhs13443.10299-104H2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel eye - muscle medial, donor2_CNhs13443_10299-104H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10299-104H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleMedialD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleMedialDonor2_CNhs13443_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2\ urlLabel FANTOM5 Details:\ EyeMuscleMedialDonor2_CNhs13443_tpm_rev EyeMuscleMedialD2- bigWig eye - muscle medial, donor2_CNhs13443_10299-104H2_reverse 1 3380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20muscle%20medial%2c%20donor2.CNhs13443.10299-104H2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel eye - muscle medial, donor2_CNhs13443_10299-104H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10299-104H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleMedialD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleMedialDonor2_CNhs13443_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2\ urlLabel FANTOM5 Details:\ EyeMuscleSuperiorDonor2_CNhs13441_ctss_fwd EyeMuscleSuperiorD2+ bigWig eye - muscle superior, donor2_CNhs13441_10297-104G9_forward 0 3381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20muscle%20superior%2c%20donor2.CNhs13441.10297-104G9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel eye - muscle superior, donor2_CNhs13441_10297-104G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10297-104G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleSuperiorD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleSuperiorDonor2_CNhs13441_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9\ urlLabel FANTOM5 Details:\ EyeMuscleSuperiorDonor2_CNhs13441_tpm_fwd EyeMuscleSuperiorD2+ bigWig eye - muscle superior, donor2_CNhs13441_10297-104G9_forward 1 3381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20muscle%20superior%2c%20donor2.CNhs13441.10297-104G9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel eye - muscle superior, donor2_CNhs13441_10297-104G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10297-104G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleSuperiorD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleSuperiorDonor2_CNhs13441_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9\ urlLabel FANTOM5 Details:\ EyeMuscleSuperiorDonor2_CNhs13441_ctss_rev EyeMuscleSuperiorD2- bigWig eye - muscle superior, donor2_CNhs13441_10297-104G9_reverse 0 3382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20muscle%20superior%2c%20donor2.CNhs13441.10297-104G9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel eye - muscle superior, donor2_CNhs13441_10297-104G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10297-104G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleSuperiorD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleSuperiorDonor2_CNhs13441_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9\ urlLabel FANTOM5 Details:\ EyeMuscleSuperiorDonor2_CNhs13441_tpm_rev EyeMuscleSuperiorD2- bigWig eye - muscle superior, donor2_CNhs13441_10297-104G9_reverse 1 3382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20muscle%20superior%2c%20donor2.CNhs13441.10297-104G9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel eye - muscle superior, donor2_CNhs13441_10297-104G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10297-104G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleSuperiorD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleSuperiorDonor2_CNhs13441_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9\ urlLabel FANTOM5 Details:\ EyeVitreousHumorDonor1_CNhs13440_ctss_fwd EyeVitreousHumorD1+ bigWig eye - vitreous humor, donor1_CNhs13440_10268-104D7_forward 0 3383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20vitreous%20humor%2c%20donor1.CNhs13440.10268-104D7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel eye - vitreous humor, donor1_CNhs13440_10268-104D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10268-104D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeVitreousHumorD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeVitreousHumorDonor1_CNhs13440_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7\ urlLabel FANTOM5 Details:\ EyeVitreousHumorDonor1_CNhs13440_tpm_fwd EyeVitreousHumorD1+ bigWig eye - vitreous humor, donor1_CNhs13440_10268-104D7_forward 1 3383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20vitreous%20humor%2c%20donor1.CNhs13440.10268-104D7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel eye - vitreous humor, donor1_CNhs13440_10268-104D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10268-104D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeVitreousHumorD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeVitreousHumorDonor1_CNhs13440_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7\ urlLabel FANTOM5 Details:\ EyeVitreousHumorDonor1_CNhs13440_ctss_rev EyeVitreousHumorD1- bigWig eye - vitreous humor, donor1_CNhs13440_10268-104D7_reverse 0 3384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20vitreous%20humor%2c%20donor1.CNhs13440.10268-104D7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel eye - vitreous humor, donor1_CNhs13440_10268-104D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10268-104D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeVitreousHumorD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeVitreousHumorDonor1_CNhs13440_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7\ urlLabel FANTOM5 Details:\ EyeVitreousHumorDonor1_CNhs13440_tpm_rev EyeVitreousHumorD1- bigWig eye - vitreous humor, donor1_CNhs13440_10268-104D7_reverse 1 3384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/eye%20-%20vitreous%20humor%2c%20donor1.CNhs13440.10268-104D7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel eye - vitreous humor, donor1_CNhs13440_10268-104D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10268-104D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeVitreousHumorD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeVitreousHumorDonor1_CNhs13440_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7\ urlLabel FANTOM5 Details:\ FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_ctss_fwd FingernailD2+ bigWig Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_forward 0 3385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fingernail%20%28including%20nail%20plate%2c%20eponychium%20and%20hyponychium%29%2c%20donor2.CNhs13445.10301-104H4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10301-104H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FingernailD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4\ urlLabel FANTOM5 Details:\ FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_tpm_fwd FingernailD2+ bigWig Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_forward 1 3385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fingernail%20%28including%20nail%20plate%2c%20eponychium%20and%20hyponychium%29%2c%20donor2.CNhs13445.10301-104H4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10301-104H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FingernailD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4\ urlLabel FANTOM5 Details:\ FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_ctss_rev FingernailD2- bigWig Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_reverse 0 3386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fingernail%20%28including%20nail%20plate%2c%20eponychium%20and%20hyponychium%29%2c%20donor2.CNhs13445.10301-104H4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10301-104H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FingernailD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4\ urlLabel FANTOM5 Details:\ FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_tpm_rev FingernailD2- bigWig Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_reverse 1 3386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Fingernail%20%28including%20nail%20plate%2c%20eponychium%20and%20hyponychium%29%2c%20donor2.CNhs13445.10301-104H4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10301-104H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FingernailD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4\ urlLabel FANTOM5 Details:\ FrontalLobeAdultPool1_CNhs10647_ctss_fwd FrontalLobeAdultPl1+ bigWig frontal lobe, adult, pool1_CNhs10647_10040-101F4_forward 0 3387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/frontal%20lobe%2c%20adult%2c%20pool1.CNhs10647.10040-101F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel frontal lobe, adult, pool1_CNhs10647_10040-101F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10040-101F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FrontalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track FrontalLobeAdultPool1_CNhs10647_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4\ urlLabel FANTOM5 Details:\ FrontalLobeAdultPool1_CNhs10647_tpm_fwd FrontalLobeAdultPl1+ bigWig frontal lobe, adult, pool1_CNhs10647_10040-101F4_forward 1 3387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/frontal%20lobe%2c%20adult%2c%20pool1.CNhs10647.10040-101F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel frontal lobe, adult, pool1_CNhs10647_10040-101F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10040-101F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FrontalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track FrontalLobeAdultPool1_CNhs10647_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4\ urlLabel FANTOM5 Details:\ FrontalLobeAdultPool1_CNhs10647_ctss_rev FrontalLobeAdultPl1- bigWig frontal lobe, adult, pool1_CNhs10647_10040-101F4_reverse 0 3388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/frontal%20lobe%2c%20adult%2c%20pool1.CNhs10647.10040-101F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel frontal lobe, adult, pool1_CNhs10647_10040-101F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10040-101F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FrontalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track FrontalLobeAdultPool1_CNhs10647_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4\ urlLabel FANTOM5 Details:\ FrontalLobeAdultPool1_CNhs10647_tpm_rev FrontalLobeAdultPl1- bigWig frontal lobe, adult, pool1_CNhs10647_10040-101F4_reverse 1 3388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/frontal%20lobe%2c%20adult%2c%20pool1.CNhs10647.10040-101F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel frontal lobe, adult, pool1_CNhs10647_10040-101F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10040-101F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FrontalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track FrontalLobeAdultPool1_CNhs10647_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4\ urlLabel FANTOM5 Details:\ GallBladderAdult_CNhs12848_ctss_fwd GallBladderAdult+ bigWig gall bladder, adult_CNhs12848_10198-103E9_forward 0 3389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/gall%20bladder%2c%20adult.CNhs12848.10198-103E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel gall bladder, adult_CNhs12848_10198-103E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10198-103E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GallBladderAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GallBladderAdult_CNhs12848_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9\ urlLabel FANTOM5 Details:\ GallBladderAdult_CNhs12848_tpm_fwd GallBladderAdult+ bigWig gall bladder, adult_CNhs12848_10198-103E9_forward 1 3389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/gall%20bladder%2c%20adult.CNhs12848.10198-103E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel gall bladder, adult_CNhs12848_10198-103E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10198-103E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GallBladderAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GallBladderAdult_CNhs12848_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9\ urlLabel FANTOM5 Details:\ GallBladderAdult_CNhs12848_ctss_rev GallBladderAdult- bigWig gall bladder, adult_CNhs12848_10198-103E9_reverse 0 3390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/gall%20bladder%2c%20adult.CNhs12848.10198-103E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel gall bladder, adult_CNhs12848_10198-103E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10198-103E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GallBladderAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GallBladderAdult_CNhs12848_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9\ urlLabel FANTOM5 Details:\ GallBladderAdult_CNhs12848_tpm_rev GallBladderAdult- bigWig gall bladder, adult_CNhs12848_10198-103E9_reverse 1 3390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/gall%20bladder%2c%20adult.CNhs12848.10198-103E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel gall bladder, adult_CNhs12848_10198-103E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10198-103E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GallBladderAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GallBladderAdult_CNhs12848_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10196_CNhs13801_ctss_fwd GlobusPallidusAdultD10196+ bigWig globus pallidus - adult, donor10196_CNhs13801_10175-103C4_forward 0 3391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/globus%20pallidus%20-%20adult%2c%20donor10196.CNhs13801.10175-103C4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel globus pallidus - adult, donor10196_CNhs13801_10175-103C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10175-103C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusAdultDonor10196_CNhs13801_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10196_CNhs13801_tpm_fwd GlobusPallidusAdultD10196+ bigWig globus pallidus - adult, donor10196_CNhs13801_10175-103C4_forward 1 3391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/globus%20pallidus%20-%20adult%2c%20donor10196.CNhs13801.10175-103C4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel globus pallidus - adult, donor10196_CNhs13801_10175-103C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10175-103C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusAdultDonor10196_CNhs13801_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10196_CNhs13801_ctss_rev GlobusPallidusAdultD10196- bigWig globus pallidus - adult, donor10196_CNhs13801_10175-103C4_reverse 0 3392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/globus%20pallidus%20-%20adult%2c%20donor10196.CNhs13801.10175-103C4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel globus pallidus - adult, donor10196_CNhs13801_10175-103C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10175-103C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10196_CNhs13801_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10196_CNhs13801_tpm_rev GlobusPallidusAdultD10196- bigWig globus pallidus - adult, donor10196_CNhs13801_10175-103C4_reverse 1 3392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/globus%20pallidus%20-%20adult%2c%20donor10196.CNhs13801.10175-103C4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel globus pallidus - adult, donor10196_CNhs13801_10175-103C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10175-103C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10196_CNhs13801_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10252_CNhs12319_ctss_fwd GlobusPallidusAdultD10252+ bigWig globus pallidus, adult, donor10252_CNhs12319_10161-103A8_forward 0 3393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/globus%20pallidus%2c%20adult%2c%20donor10252.CNhs12319.10161-103A8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel globus pallidus, adult, donor10252_CNhs12319_10161-103A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10161-103A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusAdultDonor10252_CNhs12319_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10252_CNhs12319_tpm_fwd GlobusPallidusAdultD10252+ bigWig globus pallidus, adult, donor10252_CNhs12319_10161-103A8_forward 1 3393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/globus%20pallidus%2c%20adult%2c%20donor10252.CNhs12319.10161-103A8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel globus pallidus, adult, donor10252_CNhs12319_10161-103A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10161-103A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusAdultDonor10252_CNhs12319_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10252_CNhs12319_ctss_rev GlobusPallidusAdultD10252- bigWig globus pallidus, adult, donor10252_CNhs12319_10161-103A8_reverse 0 3394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/globus%20pallidus%2c%20adult%2c%20donor10252.CNhs12319.10161-103A8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel globus pallidus, adult, donor10252_CNhs12319_10161-103A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10161-103A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10252_CNhs12319_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10252_CNhs12319_tpm_rev GlobusPallidusAdultD10252- bigWig globus pallidus, adult, donor10252_CNhs12319_10161-103A8_reverse 1 3394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/globus%20pallidus%2c%20adult%2c%20donor10252.CNhs12319.10161-103A8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel globus pallidus, adult, donor10252_CNhs12319_10161-103A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10161-103A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10252_CNhs12319_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10258_CNhs14549_ctss_fwd GlobusPallidusAdultD10258+ bigWig globus pallidus, adult, donor10258_CNhs14549_10367-105F7_forward 0 3395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/globus%20pallidus%2c%20adult%2c%20donor10258.CNhs14549.10367-105F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel globus pallidus, adult, donor10258_CNhs14549_10367-105F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10367-105F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusAdultDonor10258_CNhs14549_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10258_CNhs14549_tpm_fwd GlobusPallidusAdultD10258+ bigWig globus pallidus, adult, donor10258_CNhs14549_10367-105F7_forward 1 3395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/globus%20pallidus%2c%20adult%2c%20donor10258.CNhs14549.10367-105F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel globus pallidus, adult, donor10258_CNhs14549_10367-105F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10367-105F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusAdultDonor10258_CNhs14549_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10258_CNhs14549_ctss_rev GlobusPallidusAdultD10258- bigWig globus pallidus, adult, donor10258_CNhs14549_10367-105F7_reverse 0 3396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/globus%20pallidus%2c%20adult%2c%20donor10258.CNhs14549.10367-105F7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel globus pallidus, adult, donor10258_CNhs14549_10367-105F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10367-105F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10258_CNhs14549_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10258_CNhs14549_tpm_rev GlobusPallidusAdultD10258- bigWig globus pallidus, adult, donor10258_CNhs14549_10367-105F7_reverse 1 3396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/globus%20pallidus%2c%20adult%2c%20donor10258.CNhs14549.10367-105F7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel globus pallidus, adult, donor10258_CNhs14549_10367-105F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10367-105F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10258_CNhs14549_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7\ urlLabel FANTOM5 Details:\ GlobusPallidusNewbornDonor10223_CNhs14082_ctss_fwd GlobusPallidusNbD10223+ bigWig globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_forward 0 3397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/globus%20pallidus%2c%20newborn%2c%20donor10223.CNhs14082.10364-105F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10364-105F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusNewbornDonor10223_CNhs14082_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4\ urlLabel FANTOM5 Details:\ GlobusPallidusNewbornDonor10223_CNhs14082_tpm_fwd GlobusPallidusNbD10223+ bigWig globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_forward 1 3397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/globus%20pallidus%2c%20newborn%2c%20donor10223.CNhs14082.10364-105F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10364-105F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusNewbornDonor10223_CNhs14082_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4\ urlLabel FANTOM5 Details:\ GlobusPallidusNewbornDonor10223_CNhs14082_ctss_rev GlobusPallidusNbD10223- bigWig globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_reverse 0 3398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/globus%20pallidus%2c%20newborn%2c%20donor10223.CNhs14082.10364-105F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10364-105F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusNewbornDonor10223_CNhs14082_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4\ urlLabel FANTOM5 Details:\ GlobusPallidusNewbornDonor10223_CNhs14082_tpm_rev GlobusPallidusNbD10223- bigWig globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_reverse 1 3398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/globus%20pallidus%2c%20newborn%2c%20donor10223.CNhs14082.10364-105F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10364-105F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusNewbornDonor10223_CNhs14082_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedDonor1_CNhs11758_ctss_fwd HeartAdultDiseasedD1+ bigWig heart, adult, diseased, donor1_CNhs11758_10051-101G6_forward 0 3399 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%2c%20adult%2c%20diseased%2c%20donor1.CNhs11758.10051-101G6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel heart, adult, diseased, donor1_CNhs11758_10051-101G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10051-101G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultDiseasedD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultDiseasedDonor1_CNhs11758_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedDonor1_CNhs11758_tpm_fwd HeartAdultDiseasedD1+ bigWig heart, adult, diseased, donor1_CNhs11758_10051-101G6_forward 1 3399 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%2c%20adult%2c%20diseased%2c%20donor1.CNhs11758.10051-101G6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel heart, adult, diseased, donor1_CNhs11758_10051-101G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10051-101G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultDiseasedD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultDiseasedDonor1_CNhs11758_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedDonor1_CNhs11758_ctss_rev HeartAdultDiseasedD1- bigWig heart, adult, diseased, donor1_CNhs11758_10051-101G6_reverse 0 3400 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%2c%20adult%2c%20diseased%2c%20donor1.CNhs11758.10051-101G6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel heart, adult, diseased, donor1_CNhs11758_10051-101G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10051-101G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultDiseasedD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultDiseasedDonor1_CNhs11758_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedDonor1_CNhs11758_tpm_rev HeartAdultDiseasedD1- bigWig heart, adult, diseased, donor1_CNhs11758_10051-101G6_reverse 1 3400 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%2c%20adult%2c%20diseased%2c%20donor1.CNhs11758.10051-101G6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel heart, adult, diseased, donor1_CNhs11758_10051-101G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10051-101G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultDiseasedD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultDiseasedDonor1_CNhs11758_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_ctss_fwd HeartAdultDiseasedPost-infarctionD1+ bigWig heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_forward 0 3401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%2c%20adult%2c%20diseased%20post-infarction%2c%20donor1.CNhs11757.10050-101G5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10050-101G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultDiseasedPost-infarctionD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_tpm_fwd HeartAdultDiseasedPost-infarctionD1+ bigWig heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_forward 1 3401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%2c%20adult%2c%20diseased%20post-infarction%2c%20donor1.CNhs11757.10050-101G5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10050-101G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultDiseasedPost-infarctionD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_ctss_rev HeartAdultDiseasedPost-infarctionD1- bigWig heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_reverse 0 3402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%2c%20adult%2c%20diseased%20post-infarction%2c%20donor1.CNhs11757.10050-101G5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10050-101G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultDiseasedPost-infarctionD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_tpm_rev HeartAdultDiseasedPost-infarctionD1- bigWig heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_reverse 1 3402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%2c%20adult%2c%20diseased%20post-infarction%2c%20donor1.CNhs11757.10050-101G5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10050-101G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultDiseasedPost-infarctionD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5\ urlLabel FANTOM5 Details:\ HeartAdultPool1_CNhs10621_ctss_fwd HeartAdultPl1+ bigWig heart, adult, pool1_CNhs10621_10016-101C7_forward 0 3403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%2c%20adult%2c%20pool1.CNhs10621.10016-101C7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel heart, adult, pool1_CNhs10621_10016-101C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10016-101C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultPool1_CNhs10621_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7\ urlLabel FANTOM5 Details:\ HeartAdultPool1_CNhs10621_tpm_fwd HeartAdultPl1+ bigWig heart, adult, pool1_CNhs10621_10016-101C7_forward 1 3403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%2c%20adult%2c%20pool1.CNhs10621.10016-101C7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel heart, adult, pool1_CNhs10621_10016-101C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10016-101C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultPool1_CNhs10621_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7\ urlLabel FANTOM5 Details:\ HeartAdultPool1_CNhs10621_ctss_rev HeartAdultPl1- bigWig heart, adult, pool1_CNhs10621_10016-101C7_reverse 0 3404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%2c%20adult%2c%20pool1.CNhs10621.10016-101C7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel heart, adult, pool1_CNhs10621_10016-101C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10016-101C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultPool1_CNhs10621_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7\ urlLabel FANTOM5 Details:\ HeartAdultPool1_CNhs10621_tpm_rev HeartAdultPl1- bigWig heart, adult, pool1_CNhs10621_10016-101C7_reverse 1 3404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%2c%20adult%2c%20pool1.CNhs10621.10016-101C7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel heart, adult, pool1_CNhs10621_10016-101C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10016-101C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultPool1_CNhs10621_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7\ urlLabel FANTOM5 Details:\ HeartFetalPool1_CNhs10653_ctss_fwd HeartFetalPl1+ bigWig heart, fetal, pool1_CNhs10653_10046-101G1_forward 0 3405 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%2c%20fetal%2c%20pool1.CNhs10653.10046-101G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel heart, fetal, pool1_CNhs10653_10046-101G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10046-101G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartFetalPool1_CNhs10653_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1\ urlLabel FANTOM5 Details:\ HeartFetalPool1_CNhs10653_tpm_fwd HeartFetalPl1+ bigWig heart, fetal, pool1_CNhs10653_10046-101G1_forward 1 3405 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%2c%20fetal%2c%20pool1.CNhs10653.10046-101G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel heart, fetal, pool1_CNhs10653_10046-101G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10046-101G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartFetalPool1_CNhs10653_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1\ urlLabel FANTOM5 Details:\ HeartFetalPool1_CNhs10653_ctss_rev HeartFetalPl1- bigWig heart, fetal, pool1_CNhs10653_10046-101G1_reverse 0 3406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%2c%20fetal%2c%20pool1.CNhs10653.10046-101G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel heart, fetal, pool1_CNhs10653_10046-101G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10046-101G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartFetalPool1_CNhs10653_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1\ urlLabel FANTOM5 Details:\ HeartFetalPool1_CNhs10653_tpm_rev HeartFetalPl1- bigWig heart, fetal, pool1_CNhs10653_10046-101G1_reverse 1 3406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%2c%20fetal%2c%20pool1.CNhs10653.10046-101G1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel heart, fetal, pool1_CNhs10653_10046-101G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10046-101G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartFetalPool1_CNhs10653_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1\ urlLabel FANTOM5 Details:\ HeartMitralValveAdult_CNhs12855_ctss_fwd HeartMitralValveAdult+ bigWig heart - mitral valve, adult_CNhs12855_10205-103F7_forward 0 3407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%20-%20mitral%20valve%2c%20adult.CNhs12855.10205-103F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel heart - mitral valve, adult_CNhs12855_10205-103F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10205-103F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartMitralValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartMitralValveAdult_CNhs12855_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7\ urlLabel FANTOM5 Details:\ HeartMitralValveAdult_CNhs12855_tpm_fwd HeartMitralValveAdult+ bigWig heart - mitral valve, adult_CNhs12855_10205-103F7_forward 1 3407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%20-%20mitral%20valve%2c%20adult.CNhs12855.10205-103F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel heart - mitral valve, adult_CNhs12855_10205-103F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10205-103F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartMitralValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartMitralValveAdult_CNhs12855_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7\ urlLabel FANTOM5 Details:\ HeartMitralValveAdult_CNhs12855_ctss_rev HeartMitralValveAdult- bigWig heart - mitral valve, adult_CNhs12855_10205-103F7_reverse 0 3408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%20-%20mitral%20valve%2c%20adult.CNhs12855.10205-103F7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel heart - mitral valve, adult_CNhs12855_10205-103F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10205-103F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartMitralValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartMitralValveAdult_CNhs12855_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7\ urlLabel FANTOM5 Details:\ HeartMitralValveAdult_CNhs12855_tpm_rev HeartMitralValveAdult- bigWig heart - mitral valve, adult_CNhs12855_10205-103F7_reverse 1 3408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%20-%20mitral%20valve%2c%20adult.CNhs12855.10205-103F7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel heart - mitral valve, adult_CNhs12855_10205-103F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10205-103F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartMitralValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartMitralValveAdult_CNhs12855_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7\ urlLabel FANTOM5 Details:\ HeartPulmonicValveAdult_CNhs12856_ctss_fwd HeartPulmonicValveAdult+ bigWig heart - pulmonic valve, adult_CNhs12856_10206-103F8_forward 0 3409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%20-%20pulmonic%20valve%2c%20adult.CNhs12856.10206-103F8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel heart - pulmonic valve, adult_CNhs12856_10206-103F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10206-103F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartPulmonicValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartPulmonicValveAdult_CNhs12856_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8\ urlLabel FANTOM5 Details:\ HeartPulmonicValveAdult_CNhs12856_tpm_fwd HeartPulmonicValveAdult+ bigWig heart - pulmonic valve, adult_CNhs12856_10206-103F8_forward 1 3409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%20-%20pulmonic%20valve%2c%20adult.CNhs12856.10206-103F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel heart - pulmonic valve, adult_CNhs12856_10206-103F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10206-103F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartPulmonicValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartPulmonicValveAdult_CNhs12856_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8\ urlLabel FANTOM5 Details:\ HeartPulmonicValveAdult_CNhs12856_ctss_rev HeartPulmonicValveAdult- bigWig heart - pulmonic valve, adult_CNhs12856_10206-103F8_reverse 0 3410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%20-%20pulmonic%20valve%2c%20adult.CNhs12856.10206-103F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel heart - pulmonic valve, adult_CNhs12856_10206-103F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10206-103F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartPulmonicValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartPulmonicValveAdult_CNhs12856_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8\ urlLabel FANTOM5 Details:\ HeartPulmonicValveAdult_CNhs12856_tpm_rev HeartPulmonicValveAdult- bigWig heart - pulmonic valve, adult_CNhs12856_10206-103F8_reverse 1 3410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%20-%20pulmonic%20valve%2c%20adult.CNhs12856.10206-103F8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel heart - pulmonic valve, adult_CNhs12856_10206-103F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10206-103F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartPulmonicValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartPulmonicValveAdult_CNhs12856_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8\ urlLabel FANTOM5 Details:\ HeartTricuspidValveAdult_CNhs12857_ctss_fwd HeartTricuspidValveAdult+ bigWig heart - tricuspid valve, adult_CNhs12857_10207-103F9_forward 0 3411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%20-%20tricuspid%20valve%2c%20adult.CNhs12857.10207-103F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel heart - tricuspid valve, adult_CNhs12857_10207-103F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10207-103F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartTricuspidValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartTricuspidValveAdult_CNhs12857_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9\ urlLabel FANTOM5 Details:\ HeartTricuspidValveAdult_CNhs12857_tpm_fwd HeartTricuspidValveAdult+ bigWig heart - tricuspid valve, adult_CNhs12857_10207-103F9_forward 1 3411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%20-%20tricuspid%20valve%2c%20adult.CNhs12857.10207-103F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel heart - tricuspid valve, adult_CNhs12857_10207-103F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10207-103F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartTricuspidValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartTricuspidValveAdult_CNhs12857_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9\ urlLabel FANTOM5 Details:\ HeartTricuspidValveAdult_CNhs12857_ctss_rev HeartTricuspidValveAdult- bigWig heart - tricuspid valve, adult_CNhs12857_10207-103F9_reverse 0 3412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%20-%20tricuspid%20valve%2c%20adult.CNhs12857.10207-103F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel heart - tricuspid valve, adult_CNhs12857_10207-103F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10207-103F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartTricuspidValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartTricuspidValveAdult_CNhs12857_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9\ urlLabel FANTOM5 Details:\ HeartTricuspidValveAdult_CNhs12857_tpm_rev HeartTricuspidValveAdult- bigWig heart - tricuspid valve, adult_CNhs12857_10207-103F9_reverse 1 3412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/heart%20-%20tricuspid%20valve%2c%20adult.CNhs12857.10207-103F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel heart - tricuspid valve, adult_CNhs12857_10207-103F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10207-103F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartTricuspidValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartTricuspidValveAdult_CNhs12857_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10196_CNhs13795_ctss_fwd HippocampusAdultD10196+ bigWig hippocampus - adult, donor10196_CNhs13795_10169-103B7_forward 0 3413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hippocampus%20-%20adult%2c%20donor10196.CNhs13795.10169-103B7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel hippocampus - adult, donor10196_CNhs13795_10169-103B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10169-103B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10196_CNhs13795_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10196_CNhs13795_tpm_fwd HippocampusAdultD10196+ bigWig hippocampus - adult, donor10196_CNhs13795_10169-103B7_forward 1 3413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hippocampus%20-%20adult%2c%20donor10196.CNhs13795.10169-103B7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel hippocampus - adult, donor10196_CNhs13795_10169-103B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10169-103B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10196_CNhs13795_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10196_CNhs13795_ctss_rev HippocampusAdultD10196- bigWig hippocampus - adult, donor10196_CNhs13795_10169-103B7_reverse 0 3414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hippocampus%20-%20adult%2c%20donor10196.CNhs13795.10169-103B7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel hippocampus - adult, donor10196_CNhs13795_10169-103B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10169-103B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10196_CNhs13795_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10196_CNhs13795_tpm_rev HippocampusAdultD10196- bigWig hippocampus - adult, donor10196_CNhs13795_10169-103B7_reverse 1 3414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hippocampus%20-%20adult%2c%20donor10196.CNhs13795.10169-103B7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel hippocampus - adult, donor10196_CNhs13795_10169-103B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10169-103B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10196_CNhs13795_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10252_CNhs12312_ctss_fwd HippocampusAdultD10252+ bigWig hippocampus, adult, donor10252_CNhs12312_10153-102I9_forward 0 3415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hippocampus%2c%20adult%2c%20donor10252.CNhs12312.10153-102I9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel hippocampus, adult, donor10252_CNhs12312_10153-102I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10153-102I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10252_CNhs12312_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10252_CNhs12312_tpm_fwd HippocampusAdultD10252+ bigWig hippocampus, adult, donor10252_CNhs12312_10153-102I9_forward 1 3415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hippocampus%2c%20adult%2c%20donor10252.CNhs12312.10153-102I9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel hippocampus, adult, donor10252_CNhs12312_10153-102I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10153-102I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10252_CNhs12312_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10252_CNhs12312_ctss_rev HippocampusAdultD10252- bigWig hippocampus, adult, donor10252_CNhs12312_10153-102I9_reverse 0 3416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hippocampus%2c%20adult%2c%20donor10252.CNhs12312.10153-102I9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel hippocampus, adult, donor10252_CNhs12312_10153-102I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10153-102I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10252_CNhs12312_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10252_CNhs12312_tpm_rev HippocampusAdultD10252- bigWig hippocampus, adult, donor10252_CNhs12312_10153-102I9_reverse 1 3416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hippocampus%2c%20adult%2c%20donor10252.CNhs12312.10153-102I9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel hippocampus, adult, donor10252_CNhs12312_10153-102I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10153-102I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10252_CNhs12312_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10258_CNhs14227_ctss_fwd HippocampusAdultD10258+ bigWig hippocampus, adult, donor10258_CNhs14227_10374-105G5_forward 0 3417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hippocampus%2c%20adult%2c%20donor10258.CNhs14227.10374-105G5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel hippocampus, adult, donor10258_CNhs14227_10374-105G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10374-105G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10258_CNhs14227_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10258_CNhs14227_tpm_fwd HippocampusAdultD10258+ bigWig hippocampus, adult, donor10258_CNhs14227_10374-105G5_forward 1 3417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hippocampus%2c%20adult%2c%20donor10258.CNhs14227.10374-105G5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel hippocampus, adult, donor10258_CNhs14227_10374-105G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10374-105G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10258_CNhs14227_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10258_CNhs14227_ctss_rev HippocampusAdultD10258- bigWig hippocampus, adult, donor10258_CNhs14227_10374-105G5_reverse 0 3418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hippocampus%2c%20adult%2c%20donor10258.CNhs14227.10374-105G5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel hippocampus, adult, donor10258_CNhs14227_10374-105G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10374-105G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10258_CNhs14227_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10258_CNhs14227_tpm_rev HippocampusAdultD10258- bigWig hippocampus, adult, donor10258_CNhs14227_10374-105G5_reverse 1 3418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hippocampus%2c%20adult%2c%20donor10258.CNhs14227.10374-105G5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel hippocampus, adult, donor10258_CNhs14227_10374-105G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10374-105G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10258_CNhs14227_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5\ urlLabel FANTOM5 Details:\ HippocampusNewbornDonor10223_CNhs14081_ctss_fwd HippocampusNbD10223+ bigWig hippocampus, newborn, donor10223_CNhs14081_10363-105F3_forward 0 3419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hippocampus%2c%20newborn%2c%20donor10223.CNhs14081.10363-105F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel hippocampus, newborn, donor10223_CNhs14081_10363-105F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10363-105F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusNewbornDonor10223_CNhs14081_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3\ urlLabel FANTOM5 Details:\ HippocampusNewbornDonor10223_CNhs14081_tpm_fwd HippocampusNbD10223+ bigWig hippocampus, newborn, donor10223_CNhs14081_10363-105F3_forward 1 3419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hippocampus%2c%20newborn%2c%20donor10223.CNhs14081.10363-105F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel hippocampus, newborn, donor10223_CNhs14081_10363-105F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10363-105F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusNewbornDonor10223_CNhs14081_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3\ urlLabel FANTOM5 Details:\ HippocampusNewbornDonor10223_CNhs14081_ctss_rev HippocampusNbD10223- bigWig hippocampus, newborn, donor10223_CNhs14081_10363-105F3_reverse 0 3420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hippocampus%2c%20newborn%2c%20donor10223.CNhs14081.10363-105F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel hippocampus, newborn, donor10223_CNhs14081_10363-105F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10363-105F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusNewbornDonor10223_CNhs14081_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3\ urlLabel FANTOM5 Details:\ HippocampusNewbornDonor10223_CNhs14081_tpm_rev HippocampusNbD10223- bigWig hippocampus, newborn, donor10223_CNhs14081_10363-105F3_reverse 1 3420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/hippocampus%2c%20newborn%2c%20donor10223.CNhs14081.10363-105F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel hippocampus, newborn, donor10223_CNhs14081_10363-105F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10363-105F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusNewbornDonor10223_CNhs14081_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3\ urlLabel FANTOM5 Details:\ InsulaAdultPool1_CNhs10646_ctss_fwd InsulaAdultPl1+ bigWig insula, adult, pool1_CNhs10646_10039-101F3_forward 0 3421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/insula%2c%20adult%2c%20pool1.CNhs10646.10039-101F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel insula, adult, pool1_CNhs10646_10039-101F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10039-101F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel InsulaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track InsulaAdultPool1_CNhs10646_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3\ urlLabel FANTOM5 Details:\ InsulaAdultPool1_CNhs10646_tpm_fwd InsulaAdultPl1+ bigWig insula, adult, pool1_CNhs10646_10039-101F3_forward 1 3421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/insula%2c%20adult%2c%20pool1.CNhs10646.10039-101F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel insula, adult, pool1_CNhs10646_10039-101F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10039-101F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel InsulaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track InsulaAdultPool1_CNhs10646_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3\ urlLabel FANTOM5 Details:\ InsulaAdultPool1_CNhs10646_ctss_rev InsulaAdultPl1- bigWig insula, adult, pool1_CNhs10646_10039-101F3_reverse 0 3422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/insula%2c%20adult%2c%20pool1.CNhs10646.10039-101F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel insula, adult, pool1_CNhs10646_10039-101F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10039-101F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel InsulaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track InsulaAdultPool1_CNhs10646_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3\ urlLabel FANTOM5 Details:\ InsulaAdultPool1_CNhs10646_tpm_rev InsulaAdultPl1- bigWig insula, adult, pool1_CNhs10646_10039-101F3_reverse 1 3422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/insula%2c%20adult%2c%20pool1.CNhs10646.10039-101F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel insula, adult, pool1_CNhs10646_10039-101F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10039-101F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel InsulaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track InsulaAdultPool1_CNhs10646_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3\ urlLabel FANTOM5 Details:\ KidneyAdultPool1_CNhs10622_ctss_fwd KidneyAdultPl1+ bigWig kidney, adult, pool1_CNhs10622_10017-101C8_forward 0 3423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/kidney%2c%20adult%2c%20pool1.CNhs10622.10017-101C8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel kidney, adult, pool1_CNhs10622_10017-101C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10017-101C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KidneyAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track KidneyAdultPool1_CNhs10622_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8\ urlLabel FANTOM5 Details:\ KidneyAdultPool1_CNhs10622_tpm_fwd KidneyAdultPl1+ bigWig kidney, adult, pool1_CNhs10622_10017-101C8_forward 1 3423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/kidney%2c%20adult%2c%20pool1.CNhs10622.10017-101C8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel kidney, adult, pool1_CNhs10622_10017-101C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10017-101C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KidneyAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track KidneyAdultPool1_CNhs10622_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8\ urlLabel FANTOM5 Details:\ KidneyAdultPool1_CNhs10622_ctss_rev KidneyAdultPl1- bigWig kidney, adult, pool1_CNhs10622_10017-101C8_reverse 0 3424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/kidney%2c%20adult%2c%20pool1.CNhs10622.10017-101C8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel kidney, adult, pool1_CNhs10622_10017-101C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10017-101C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KidneyAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track KidneyAdultPool1_CNhs10622_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8\ urlLabel FANTOM5 Details:\ KidneyAdultPool1_CNhs10622_tpm_rev KidneyAdultPl1- bigWig kidney, adult, pool1_CNhs10622_10017-101C8_reverse 1 3424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/kidney%2c%20adult%2c%20pool1.CNhs10622.10017-101C8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel kidney, adult, pool1_CNhs10622_10017-101C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10017-101C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KidneyAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track KidneyAdultPool1_CNhs10622_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8\ urlLabel FANTOM5 Details:\ KidneyFetalPool1_CNhs10652_ctss_fwd KidneyFetalPl1+ bigWig kidney, fetal, pool1_CNhs10652_10045-101F9_forward 0 3425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/kidney%2c%20fetal%2c%20pool1.CNhs10652.10045-101F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel kidney, fetal, pool1_CNhs10652_10045-101F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10045-101F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KidneyFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track KidneyFetalPool1_CNhs10652_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9\ urlLabel FANTOM5 Details:\ KidneyFetalPool1_CNhs10652_tpm_fwd KidneyFetalPl1+ bigWig kidney, fetal, pool1_CNhs10652_10045-101F9_forward 1 3425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/kidney%2c%20fetal%2c%20pool1.CNhs10652.10045-101F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel kidney, fetal, pool1_CNhs10652_10045-101F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10045-101F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KidneyFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track KidneyFetalPool1_CNhs10652_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9\ urlLabel FANTOM5 Details:\ KidneyFetalPool1_CNhs10652_ctss_rev KidneyFetalPl1- bigWig kidney, fetal, pool1_CNhs10652_10045-101F9_reverse 0 3426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/kidney%2c%20fetal%2c%20pool1.CNhs10652.10045-101F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel kidney, fetal, pool1_CNhs10652_10045-101F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10045-101F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KidneyFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track KidneyFetalPool1_CNhs10652_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9\ urlLabel FANTOM5 Details:\ KidneyFetalPool1_CNhs10652_tpm_rev KidneyFetalPl1- bigWig kidney, fetal, pool1_CNhs10652_10045-101F9_reverse 1 3426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/kidney%2c%20fetal%2c%20pool1.CNhs10652.10045-101F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel kidney, fetal, pool1_CNhs10652_10045-101F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10045-101F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KidneyFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track KidneyFetalPool1_CNhs10652_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9\ urlLabel FANTOM5 Details:\ LeftAtriumAdultDonor1_CNhs11790_ctss_fwd LeftAtriumAdultD1+ bigWig left atrium, adult, donor1_CNhs11790_10079-102A7_forward 0 3427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/left%20atrium%2c%20adult%2c%20donor1.CNhs11790.10079-102A7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel left atrium, adult, donor1_CNhs11790_10079-102A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10079-102A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LeftAtriumAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LeftAtriumAdultDonor1_CNhs11790_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7\ urlLabel FANTOM5 Details:\ LeftAtriumAdultDonor1_CNhs11790_tpm_fwd LeftAtriumAdultD1+ bigWig left atrium, adult, donor1_CNhs11790_10079-102A7_forward 1 3427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/left%20atrium%2c%20adult%2c%20donor1.CNhs11790.10079-102A7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel left atrium, adult, donor1_CNhs11790_10079-102A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10079-102A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LeftAtriumAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LeftAtriumAdultDonor1_CNhs11790_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7\ urlLabel FANTOM5 Details:\ LeftAtriumAdultDonor1_CNhs11790_ctss_rev LeftAtriumAdultD1- bigWig left atrium, adult, donor1_CNhs11790_10079-102A7_reverse 0 3428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/left%20atrium%2c%20adult%2c%20donor1.CNhs11790.10079-102A7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel left atrium, adult, donor1_CNhs11790_10079-102A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10079-102A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LeftAtriumAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LeftAtriumAdultDonor1_CNhs11790_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7\ urlLabel FANTOM5 Details:\ LeftAtriumAdultDonor1_CNhs11790_tpm_rev LeftAtriumAdultD1- bigWig left atrium, adult, donor1_CNhs11790_10079-102A7_reverse 1 3428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/left%20atrium%2c%20adult%2c%20donor1.CNhs11790.10079-102A7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel left atrium, adult, donor1_CNhs11790_10079-102A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10079-102A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LeftAtriumAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LeftAtriumAdultDonor1_CNhs11790_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7\ urlLabel FANTOM5 Details:\ LeftVentricleAdultDonor1_CNhs11789_ctss_fwd LeftVentricleAdultD1+ bigWig left ventricle, adult, donor1_CNhs11789_10078-102A6_forward 0 3429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/left%20ventricle%2c%20adult%2c%20donor1.CNhs11789.10078-102A6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel left ventricle, adult, donor1_CNhs11789_10078-102A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10078-102A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LeftVentricleAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LeftVentricleAdultDonor1_CNhs11789_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6\ urlLabel FANTOM5 Details:\ LeftVentricleAdultDonor1_CNhs11789_tpm_fwd LeftVentricleAdultD1+ bigWig left ventricle, adult, donor1_CNhs11789_10078-102A6_forward 1 3429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/left%20ventricle%2c%20adult%2c%20donor1.CNhs11789.10078-102A6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel left ventricle, adult, donor1_CNhs11789_10078-102A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10078-102A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LeftVentricleAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LeftVentricleAdultDonor1_CNhs11789_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6\ urlLabel FANTOM5 Details:\ LeftVentricleAdultDonor1_CNhs11789_ctss_rev LeftVentricleAdultD1- bigWig left ventricle, adult, donor1_CNhs11789_10078-102A6_reverse 0 3430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/left%20ventricle%2c%20adult%2c%20donor1.CNhs11789.10078-102A6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel left ventricle, adult, donor1_CNhs11789_10078-102A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10078-102A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LeftVentricleAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LeftVentricleAdultDonor1_CNhs11789_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6\ urlLabel FANTOM5 Details:\ LeftVentricleAdultDonor1_CNhs11789_tpm_rev LeftVentricleAdultD1- bigWig left ventricle, adult, donor1_CNhs11789_10078-102A6_reverse 1 3430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/left%20ventricle%2c%20adult%2c%20donor1.CNhs11789.10078-102A6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel left ventricle, adult, donor1_CNhs11789_10078-102A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10078-102A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LeftVentricleAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LeftVentricleAdultDonor1_CNhs11789_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6\ urlLabel FANTOM5 Details:\ LiverAdultPool1_CNhs10624_ctss_fwd LiverAdultPl1+ bigWig liver, adult, pool1_CNhs10624_10018-101C9_forward 0 3431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/liver%2c%20adult%2c%20pool1.CNhs10624.10018-101C9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel liver, adult, pool1_CNhs10624_10018-101C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10018-101C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LiverAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LiverAdultPool1_CNhs10624_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9\ urlLabel FANTOM5 Details:\ LiverAdultPool1_CNhs10624_tpm_fwd LiverAdultPl1+ bigWig liver, adult, pool1_CNhs10624_10018-101C9_forward 1 3431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/liver%2c%20adult%2c%20pool1.CNhs10624.10018-101C9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel liver, adult, pool1_CNhs10624_10018-101C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10018-101C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LiverAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LiverAdultPool1_CNhs10624_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9\ urlLabel FANTOM5 Details:\ LiverAdultPool1_CNhs10624_ctss_rev LiverAdultPl1- bigWig liver, adult, pool1_CNhs10624_10018-101C9_reverse 0 3432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/liver%2c%20adult%2c%20pool1.CNhs10624.10018-101C9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel liver, adult, pool1_CNhs10624_10018-101C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10018-101C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LiverAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LiverAdultPool1_CNhs10624_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9\ urlLabel FANTOM5 Details:\ LiverAdultPool1_CNhs10624_tpm_rev LiverAdultPl1- bigWig liver, adult, pool1_CNhs10624_10018-101C9_reverse 1 3432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/liver%2c%20adult%2c%20pool1.CNhs10624.10018-101C9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel liver, adult, pool1_CNhs10624_10018-101C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10018-101C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LiverAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LiverAdultPool1_CNhs10624_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9\ urlLabel FANTOM5 Details:\ LiverFetalPool1_CNhs11798_ctss_fwd LiverFetalPl1+ bigWig liver, fetal, pool1_CNhs11798_10086-102B5_forward 0 3433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/liver%2c%20fetal%2c%20pool1.CNhs11798.10086-102B5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel liver, fetal, pool1_CNhs11798_10086-102B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10086-102B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LiverFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LiverFetalPool1_CNhs11798_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5\ urlLabel FANTOM5 Details:\ LiverFetalPool1_CNhs11798_tpm_fwd LiverFetalPl1+ bigWig liver, fetal, pool1_CNhs11798_10086-102B5_forward 1 3433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/liver%2c%20fetal%2c%20pool1.CNhs11798.10086-102B5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel liver, fetal, pool1_CNhs11798_10086-102B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10086-102B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LiverFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LiverFetalPool1_CNhs11798_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5\ urlLabel FANTOM5 Details:\ LiverFetalPool1_CNhs11798_ctss_rev LiverFetalPl1- bigWig liver, fetal, pool1_CNhs11798_10086-102B5_reverse 0 3434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/liver%2c%20fetal%2c%20pool1.CNhs11798.10086-102B5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel liver, fetal, pool1_CNhs11798_10086-102B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10086-102B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LiverFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LiverFetalPool1_CNhs11798_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5\ urlLabel FANTOM5 Details:\ LiverFetalPool1_CNhs11798_tpm_rev LiverFetalPl1- bigWig liver, fetal, pool1_CNhs11798_10086-102B5_reverse 1 3434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/liver%2c%20fetal%2c%20pool1.CNhs11798.10086-102B5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel liver, fetal, pool1_CNhs11798_10086-102B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10086-102B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LiverFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LiverFetalPool1_CNhs11798_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10196_CNhs13808_ctss_fwd LocusCoeruleusAdultD10196+ bigWig locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_forward 0 3435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/locus%20coeruleus%20-%20adult%2c%20donor10196.CNhs13808.10182-103D2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10182-103D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10196_CNhs13808_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10196_CNhs13808_tpm_fwd LocusCoeruleusAdultD10196+ bigWig locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_forward 1 3435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/locus%20coeruleus%20-%20adult%2c%20donor10196.CNhs13808.10182-103D2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10182-103D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10196_CNhs13808_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10196_CNhs13808_ctss_rev LocusCoeruleusAdultD10196- bigWig locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_reverse 0 3436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/locus%20coeruleus%20-%20adult%2c%20donor10196.CNhs13808.10182-103D2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10182-103D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10196_CNhs13808_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10196_CNhs13808_tpm_rev LocusCoeruleusAdultD10196- bigWig locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_reverse 1 3436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/locus%20coeruleus%20-%20adult%2c%20donor10196.CNhs13808.10182-103D2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10182-103D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10196_CNhs13808_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10252_CNhs12322_ctss_fwd LocusCoeruleusAdultD10252+ bigWig locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_forward 0 3437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10252.CNhs12322.10165-103B3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10165-103B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10252_CNhs12322_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10252_CNhs12322_tpm_fwd LocusCoeruleusAdultD10252+ bigWig locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_forward 1 3437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10252.CNhs12322.10165-103B3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10165-103B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10252_CNhs12322_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10252_CNhs12322_ctss_rev LocusCoeruleusAdultD10252- bigWig locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_reverse 0 3438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10252.CNhs12322.10165-103B3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10165-103B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10252_CNhs12322_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10252_CNhs12322_tpm_rev LocusCoeruleusAdultD10252- bigWig locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_reverse 1 3438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10252.CNhs12322.10165-103B3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10165-103B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10252_CNhs12322_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10258_CNhs14550_ctss_fwd LocusCoeruleusAdultD10258+ bigWig locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_forward 0 3439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10258.CNhs14550.10375-105G6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10375-105G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10258_CNhs14550_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10258_CNhs14550_tpm_fwd LocusCoeruleusAdultD10258+ bigWig locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_forward 1 3439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10258.CNhs14550.10375-105G6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10375-105G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10258_CNhs14550_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10258_CNhs14550_ctss_rev LocusCoeruleusAdultD10258- bigWig locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_reverse 0 3440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10258.CNhs14550.10375-105G6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10375-105G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10258_CNhs14550_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10258_CNhs14550_tpm_rev LocusCoeruleusAdultD10258- bigWig locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_reverse 1 3440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10258.CNhs14550.10375-105G6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10375-105G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10258_CNhs14550_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6\ urlLabel FANTOM5 Details:\ LocusCoeruleusNewbornDonor10223_CNhs14080_ctss_fwd LocusCoeruleusNbD10223+ bigWig locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_forward 0 3441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/locus%20coeruleus%2c%20newborn%2c%20donor10223.CNhs14080.10362-105F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10362-105F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusNewbornDonor10223_CNhs14080_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2\ urlLabel FANTOM5 Details:\ LocusCoeruleusNewbornDonor10223_CNhs14080_tpm_fwd LocusCoeruleusNbD10223+ bigWig locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_forward 1 3441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/locus%20coeruleus%2c%20newborn%2c%20donor10223.CNhs14080.10362-105F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10362-105F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusNewbornDonor10223_CNhs14080_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2\ urlLabel FANTOM5 Details:\ LocusCoeruleusNewbornDonor10223_CNhs14080_ctss_rev LocusCoeruleusNbD10223- bigWig locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_reverse 0 3442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/locus%20coeruleus%2c%20newborn%2c%20donor10223.CNhs14080.10362-105F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10362-105F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusNewbornDonor10223_CNhs14080_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2\ urlLabel FANTOM5 Details:\ LocusCoeruleusNewbornDonor10223_CNhs14080_tpm_rev LocusCoeruleusNbD10223- bigWig locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_reverse 1 3442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/locus%20coeruleus%2c%20newborn%2c%20donor10223.CNhs14080.10362-105F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10362-105F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusNewbornDonor10223_CNhs14080_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2\ urlLabel FANTOM5 Details:\ LungAdultPool1_CNhs10625_ctss_fwd LungAdultPl1+ bigWig lung, adult, pool1_CNhs10625_10019-101D1_forward 0 3443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%2c%20adult%2c%20pool1.CNhs10625.10019-101D1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel lung, adult, pool1_CNhs10625_10019-101D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10019-101D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungAdultPool1_CNhs10625_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1\ urlLabel FANTOM5 Details:\ LungAdultPool1_CNhs10625_tpm_fwd LungAdultPl1+ bigWig lung, adult, pool1_CNhs10625_10019-101D1_forward 1 3443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%2c%20adult%2c%20pool1.CNhs10625.10019-101D1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel lung, adult, pool1_CNhs10625_10019-101D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10019-101D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungAdultPool1_CNhs10625_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1\ urlLabel FANTOM5 Details:\ LungAdultPool1_CNhs10625_ctss_rev LungAdultPl1- bigWig lung, adult, pool1_CNhs10625_10019-101D1_reverse 0 3444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%2c%20adult%2c%20pool1.CNhs10625.10019-101D1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel lung, adult, pool1_CNhs10625_10019-101D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10019-101D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungAdultPool1_CNhs10625_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1\ urlLabel FANTOM5 Details:\ LungAdultPool1_CNhs10625_tpm_rev LungAdultPl1- bigWig lung, adult, pool1_CNhs10625_10019-101D1_reverse 1 3444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%2c%20adult%2c%20pool1.CNhs10625.10019-101D1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel lung, adult, pool1_CNhs10625_10019-101D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10019-101D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungAdultPool1_CNhs10625_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1\ urlLabel FANTOM5 Details:\ LungFetalDonor1_CNhs11680_ctss_fwd LungFetalD1+ bigWig lung, fetal, donor1_CNhs11680_10068-101I5_forward 0 3445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%2c%20fetal%2c%20donor1.CNhs11680.10068-101I5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel lung, fetal, donor1_CNhs11680_10068-101I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10068-101I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungFetalDonor1_CNhs11680_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5\ urlLabel FANTOM5 Details:\ LungFetalDonor1_CNhs11680_tpm_fwd LungFetalD1+ bigWig lung, fetal, donor1_CNhs11680_10068-101I5_forward 1 3445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%2c%20fetal%2c%20donor1.CNhs11680.10068-101I5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel lung, fetal, donor1_CNhs11680_10068-101I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10068-101I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungFetalDonor1_CNhs11680_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5\ urlLabel FANTOM5 Details:\ LungFetalDonor1_CNhs11680_ctss_rev LungFetalD1- bigWig lung, fetal, donor1_CNhs11680_10068-101I5_reverse 0 3446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%2c%20fetal%2c%20donor1.CNhs11680.10068-101I5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel lung, fetal, donor1_CNhs11680_10068-101I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10068-101I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungFetalDonor1_CNhs11680_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5\ urlLabel FANTOM5 Details:\ LungFetalDonor1_CNhs11680_tpm_rev LungFetalD1- bigWig lung, fetal, donor1_CNhs11680_10068-101I5_reverse 1 3446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%2c%20fetal%2c%20donor1.CNhs11680.10068-101I5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel lung, fetal, donor1_CNhs11680_10068-101I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10068-101I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungFetalDonor1_CNhs11680_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5\ urlLabel FANTOM5 Details:\ LungRightLowerLobeAdultDonor1_CNhs11786_ctss_fwd LungRightLowerLobeAdultD1+ bigWig lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_forward 0 3447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%2c%20right%20lower%20lobe%2c%20adult%2c%20donor1.CNhs11786.10075-102A3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10075-102A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungRightLowerLobeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungRightLowerLobeAdultDonor1_CNhs11786_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3\ urlLabel FANTOM5 Details:\ LungRightLowerLobeAdultDonor1_CNhs11786_tpm_fwd LungRightLowerLobeAdultD1+ bigWig lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_forward 1 3447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%2c%20right%20lower%20lobe%2c%20adult%2c%20donor1.CNhs11786.10075-102A3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10075-102A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungRightLowerLobeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungRightLowerLobeAdultDonor1_CNhs11786_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3\ urlLabel FANTOM5 Details:\ LungRightLowerLobeAdultDonor1_CNhs11786_ctss_rev LungRightLowerLobeAdultD1- bigWig lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_reverse 0 3448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%2c%20right%20lower%20lobe%2c%20adult%2c%20donor1.CNhs11786.10075-102A3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10075-102A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungRightLowerLobeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungRightLowerLobeAdultDonor1_CNhs11786_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3\ urlLabel FANTOM5 Details:\ LungRightLowerLobeAdultDonor1_CNhs11786_tpm_rev LungRightLowerLobeAdultD1- bigWig lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_reverse 1 3448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lung%2c%20right%20lower%20lobe%2c%20adult%2c%20donor1.CNhs11786.10075-102A3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10075-102A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungRightLowerLobeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungRightLowerLobeAdultDonor1_CNhs11786_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3\ urlLabel FANTOM5 Details:\ LymphNodeAdultDonor1_CNhs11788_ctss_fwd LymphNodeAdultD1+ bigWig lymph node, adult, donor1_CNhs11788_10077-102A5_forward 0 3449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lymph%20node%2c%20adult%2c%20donor1.CNhs11788.10077-102A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel lymph node, adult, donor1_CNhs11788_10077-102A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10077-102A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphNodeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LymphNodeAdultDonor1_CNhs11788_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5\ urlLabel FANTOM5 Details:\ LymphNodeAdultDonor1_CNhs11788_tpm_fwd LymphNodeAdultD1+ bigWig lymph node, adult, donor1_CNhs11788_10077-102A5_forward 1 3449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lymph%20node%2c%20adult%2c%20donor1.CNhs11788.10077-102A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel lymph node, adult, donor1_CNhs11788_10077-102A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10077-102A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphNodeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LymphNodeAdultDonor1_CNhs11788_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5\ urlLabel FANTOM5 Details:\ LymphNodeAdultDonor1_CNhs11788_ctss_rev LymphNodeAdultD1- bigWig lymph node, adult, donor1_CNhs11788_10077-102A5_reverse 0 3450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lymph%20node%2c%20adult%2c%20donor1.CNhs11788.10077-102A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel lymph node, adult, donor1_CNhs11788_10077-102A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10077-102A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphNodeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LymphNodeAdultDonor1_CNhs11788_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5\ urlLabel FANTOM5 Details:\ LymphNodeAdultDonor1_CNhs11788_tpm_rev LymphNodeAdultD1- bigWig lymph node, adult, donor1_CNhs11788_10077-102A5_reverse 1 3450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/lymph%20node%2c%20adult%2c%20donor1.CNhs11788.10077-102A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel lymph node, adult, donor1_CNhs11788_10077-102A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10077-102A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphNodeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LymphNodeAdultDonor1_CNhs11788_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10196_CNhs13796_ctss_fwd MedialFrontalGyrusAdultD10196+ bigWig medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_forward 0 3451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20frontal%20gyrus%20-%20adult%2c%20donor10196.CNhs13796.10170-103B8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10170-103B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10196_CNhs13796_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10196_CNhs13796_tpm_fwd MedialFrontalGyrusAdultD10196+ bigWig medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_forward 1 3451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20frontal%20gyrus%20-%20adult%2c%20donor10196.CNhs13796.10170-103B8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10170-103B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10196_CNhs13796_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10196_CNhs13796_ctss_rev MedialFrontalGyrusAdultD10196- bigWig medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_reverse 0 3452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20frontal%20gyrus%20-%20adult%2c%20donor10196.CNhs13796.10170-103B8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10170-103B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10196_CNhs13796_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10196_CNhs13796_tpm_rev MedialFrontalGyrusAdultD10196- bigWig medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_reverse 1 3452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20frontal%20gyrus%20-%20adult%2c%20donor10196.CNhs13796.10170-103B8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10170-103B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10196_CNhs13796_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10252_CNhs12310_ctss_fwd MedialFrontalGyrusAdultD10252+ bigWig medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_forward 0 3453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10252.CNhs12310.10150-102I6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10150-102I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10252_CNhs12310_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10252_CNhs12310_tpm_fwd MedialFrontalGyrusAdultD10252+ bigWig medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_forward 1 3453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10252.CNhs12310.10150-102I6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10150-102I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10252_CNhs12310_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10252_CNhs12310_ctss_rev MedialFrontalGyrusAdultD10252- bigWig medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_reverse 0 3454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10252.CNhs12310.10150-102I6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10150-102I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10252_CNhs12310_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10252_CNhs12310_tpm_rev MedialFrontalGyrusAdultD10252- bigWig medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_reverse 1 3454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10252.CNhs12310.10150-102I6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10150-102I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10252_CNhs12310_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10258_CNhs14221_ctss_fwd MedialFrontalGyrusAdultD10258+ bigWig medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_forward 0 3455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10258.CNhs14221.10368-105F8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10368-105F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10258_CNhs14221_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10258_CNhs14221_tpm_fwd MedialFrontalGyrusAdultD10258+ bigWig medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_forward 1 3455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10258.CNhs14221.10368-105F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10368-105F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10258_CNhs14221_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10258_CNhs14221_ctss_rev MedialFrontalGyrusAdultD10258- bigWig medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_reverse 0 3456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10258.CNhs14221.10368-105F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10368-105F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10258_CNhs14221_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10258_CNhs14221_tpm_rev MedialFrontalGyrusAdultD10258- bigWig medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_reverse 1 3456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10258.CNhs14221.10368-105F8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10368-105F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10258_CNhs14221_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusNewbornDonor10223_CNhs14069_ctss_fwd MedialFrontalGyrusNbD10223+ bigWig medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_forward 0 3457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20frontal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14069.10352-105E1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10352-105E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusNewbornDonor10223_CNhs14069_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusNewbornDonor10223_CNhs14069_tpm_fwd MedialFrontalGyrusNbD10223+ bigWig medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_forward 1 3457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20frontal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14069.10352-105E1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10352-105E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusNewbornDonor10223_CNhs14069_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusNewbornDonor10223_CNhs14069_ctss_rev MedialFrontalGyrusNbD10223- bigWig medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_reverse 0 3458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20frontal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14069.10352-105E1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10352-105E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusNewbornDonor10223_CNhs14069_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusNewbornDonor10223_CNhs14069_tpm_rev MedialFrontalGyrusNbD10223- bigWig medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_reverse 1 3458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20frontal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14069.10352-105E1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10352-105E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusNewbornDonor10223_CNhs14069_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10196_CNhs13809_ctss_fwd MedialTemporalGyrusAdultD10196+ bigWig medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_forward 0 3459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%20-%20adult%2c%20donor10196.CNhs13809.10183-103D3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10183-103D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10196_CNhs13809_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10196_CNhs13809_tpm_fwd MedialTemporalGyrusAdultD10196+ bigWig medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_forward 1 3459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%20-%20adult%2c%20donor10196.CNhs13809.10183-103D3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10183-103D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10196_CNhs13809_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10196_CNhs13809_ctss_rev MedialTemporalGyrusAdultD10196- bigWig medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_reverse 0 3460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%20-%20adult%2c%20donor10196.CNhs13809.10183-103D3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10183-103D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10196_CNhs13809_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10196_CNhs13809_tpm_rev MedialTemporalGyrusAdultD10196- bigWig medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_reverse 1 3460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%20-%20adult%2c%20donor10196.CNhs13809.10183-103D3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10183-103D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10196_CNhs13809_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10252_CNhs12316_ctss_fwd MedialTemporalGyrusAdultD10252+ bigWig medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_forward 0 3461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10252.CNhs12316.10156-103A3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10156-103A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10252_CNhs12316_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10252_CNhs12316_tpm_fwd MedialTemporalGyrusAdultD10252+ bigWig medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_forward 1 3461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10252.CNhs12316.10156-103A3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10156-103A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10252_CNhs12316_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10252_CNhs12316_ctss_rev MedialTemporalGyrusAdultD10252- bigWig medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_reverse 0 3462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10252.CNhs12316.10156-103A3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10156-103A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10252_CNhs12316_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10252_CNhs12316_tpm_rev MedialTemporalGyrusAdultD10252- bigWig medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_reverse 1 3462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10252.CNhs12316.10156-103A3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10156-103A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10252_CNhs12316_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_ctss_fwd MedialTemporalGyrusAdultD10258Tr1+ bigWig medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_forward 0 3463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14229.10376-105G7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_tpm_fwd MedialTemporalGyrusAdultD10258Tr1+ bigWig medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_forward 1 3463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14229.10376-105G7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_ctss_rev MedialTemporalGyrusAdultD10258Tr1- bigWig medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_reverse 0 3464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14229.10376-105G7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_tpm_rev MedialTemporalGyrusAdultD10258Tr1- bigWig medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_reverse 1 3464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14229.10376-105G7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_ctss_fwd MedialTemporalGyrusAdultD10258Tr2+ bigWig medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_forward 0 3465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14552.10376-105G7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_tpm_fwd MedialTemporalGyrusAdultD10258Tr2+ bigWig medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_forward 1 3465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14552.10376-105G7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_ctss_rev MedialTemporalGyrusAdultD10258Tr2- bigWig medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_reverse 0 3466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14552.10376-105G7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_tpm_rev MedialTemporalGyrusAdultD10258Tr2- bigWig medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_reverse 1 3466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14552.10376-105G7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusNewbornDonor10223_CNhs14070_ctss_fwd MedialTemporalGyrusNbD10223+ bigWig medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_forward 0 3467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14070.10353-105E2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10353-105E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusNewbornDonor10223_CNhs14070_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusNewbornDonor10223_CNhs14070_tpm_fwd MedialTemporalGyrusNbD10223+ bigWig medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_forward 1 3467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14070.10353-105E2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10353-105E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusNewbornDonor10223_CNhs14070_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusNewbornDonor10223_CNhs14070_ctss_rev MedialTemporalGyrusNbD10223- bigWig medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_reverse 0 3468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14070.10353-105E2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10353-105E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusNewbornDonor10223_CNhs14070_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusNewbornDonor10223_CNhs14070_tpm_rev MedialTemporalGyrusNbD10223- bigWig medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_reverse 1 3468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medial%20temporal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14070.10353-105E2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10353-105E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusNewbornDonor10223_CNhs14070_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10196_CNhs13800_ctss_fwd MedullaOblongataAdultD10196+ bigWig medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_forward 0 3469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulla%20oblongata%20-%20adult%2c%20donor10196.CNhs13800.10174-103C3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10174-103C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultDonor10196_CNhs13800_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10196_CNhs13800_tpm_fwd MedullaOblongataAdultD10196+ bigWig medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_forward 1 3469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulla%20oblongata%20-%20adult%2c%20donor10196.CNhs13800.10174-103C3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10174-103C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultDonor10196_CNhs13800_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10196_CNhs13800_ctss_rev MedullaOblongataAdultD10196- bigWig medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_reverse 0 3470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulla%20oblongata%20-%20adult%2c%20donor10196.CNhs13800.10174-103C3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10174-103C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultDonor10196_CNhs13800_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10196_CNhs13800_tpm_rev MedullaOblongataAdultD10196- bigWig medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_reverse 1 3470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulla%20oblongata%20-%20adult%2c%20donor10196.CNhs13800.10174-103C3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10174-103C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultDonor10196_CNhs13800_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10252_CNhs12315_ctss_fwd MedullaOblongataAdultD10252+ bigWig medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_forward 0 3471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulla%20oblongata%2c%20adult%2c%20donor10252.CNhs12315.10155-103A2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10155-103A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultDonor10252_CNhs12315_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10252_CNhs12315_tpm_fwd MedullaOblongataAdultD10252+ bigWig medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_forward 1 3471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulla%20oblongata%2c%20adult%2c%20donor10252.CNhs12315.10155-103A2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10155-103A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultDonor10252_CNhs12315_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10252_CNhs12315_ctss_rev MedullaOblongataAdultD10252- bigWig medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_reverse 0 3472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulla%20oblongata%2c%20adult%2c%20donor10252.CNhs12315.10155-103A2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10155-103A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultDonor10252_CNhs12315_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10252_CNhs12315_tpm_rev MedullaOblongataAdultD10252- bigWig medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_reverse 1 3472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulla%20oblongata%2c%20adult%2c%20donor10252.CNhs12315.10155-103A2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10155-103A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultDonor10252_CNhs12315_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultPool1_CNhs10645_ctss_fwd MedullaOblongataAdultPl1+ bigWig medulla oblongata, adult, pool1_CNhs10645_10038-101F2_forward 0 3473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulla%20oblongata%2c%20adult%2c%20pool1.CNhs10645.10038-101F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, adult, pool1_CNhs10645_10038-101F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10038-101F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultPool1_CNhs10645_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultPool1_CNhs10645_tpm_fwd MedullaOblongataAdultPl1+ bigWig medulla oblongata, adult, pool1_CNhs10645_10038-101F2_forward 1 3473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulla%20oblongata%2c%20adult%2c%20pool1.CNhs10645.10038-101F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, adult, pool1_CNhs10645_10038-101F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10038-101F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultPool1_CNhs10645_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultPool1_CNhs10645_ctss_rev MedullaOblongataAdultPl1- bigWig medulla oblongata, adult, pool1_CNhs10645_10038-101F2_reverse 0 3474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulla%20oblongata%2c%20adult%2c%20pool1.CNhs10645.10038-101F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel medulla oblongata, adult, pool1_CNhs10645_10038-101F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10038-101F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultPool1_CNhs10645_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultPool1_CNhs10645_tpm_rev MedullaOblongataAdultPl1- bigWig medulla oblongata, adult, pool1_CNhs10645_10038-101F2_reverse 1 3474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulla%20oblongata%2c%20adult%2c%20pool1.CNhs10645.10038-101F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel medulla oblongata, adult, pool1_CNhs10645_10038-101F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10038-101F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultPool1_CNhs10645_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2\ urlLabel FANTOM5 Details:\ MedullaOblongataNewbornDonor10223_CNhs14079_ctss_fwd MedullaOblongataNbD10223+ bigWig medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_forward 0 3475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulla%20oblongata%2c%20newborn%2c%20donor10223.CNhs14079.10361-105F1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10361-105F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataNewbornDonor10223_CNhs14079_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1\ urlLabel FANTOM5 Details:\ MedullaOblongataNewbornDonor10223_CNhs14079_tpm_fwd MedullaOblongataNbD10223+ bigWig medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_forward 1 3475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulla%20oblongata%2c%20newborn%2c%20donor10223.CNhs14079.10361-105F1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10361-105F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataNewbornDonor10223_CNhs14079_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1\ urlLabel FANTOM5 Details:\ MedullaOblongataNewbornDonor10223_CNhs14079_ctss_rev MedullaOblongataNbD10223- bigWig medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_reverse 0 3476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulla%20oblongata%2c%20newborn%2c%20donor10223.CNhs14079.10361-105F1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10361-105F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataNewbornDonor10223_CNhs14079_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1\ urlLabel FANTOM5 Details:\ MedullaOblongataNewbornDonor10223_CNhs14079_tpm_rev MedullaOblongataNbD10223- bigWig medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_reverse 1 3476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/medulla%20oblongata%2c%20newborn%2c%20donor10223.CNhs14079.10361-105F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10361-105F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataNewbornDonor10223_CNhs14079_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1\ urlLabel FANTOM5 Details:\ NucleusAccumbensAdultPool1_CNhs10644_ctss_fwd NucleusAccumbensAdultPl1+ bigWig nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_forward 0 3477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/nucleus%20accumbens%2c%20adult%2c%20pool1.CNhs10644.10037-101F1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10037-101F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusAccumbensAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track NucleusAccumbensAdultPool1_CNhs10644_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1\ urlLabel FANTOM5 Details:\ NucleusAccumbensAdultPool1_CNhs10644_tpm_fwd NucleusAccumbensAdultPl1+ bigWig nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_forward 1 3477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/nucleus%20accumbens%2c%20adult%2c%20pool1.CNhs10644.10037-101F1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10037-101F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusAccumbensAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track NucleusAccumbensAdultPool1_CNhs10644_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1\ urlLabel FANTOM5 Details:\ NucleusAccumbensAdultPool1_CNhs10644_ctss_rev NucleusAccumbensAdultPl1- bigWig nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_reverse 0 3478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/nucleus%20accumbens%2c%20adult%2c%20pool1.CNhs10644.10037-101F1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10037-101F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusAccumbensAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track NucleusAccumbensAdultPool1_CNhs10644_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1\ urlLabel FANTOM5 Details:\ NucleusAccumbensAdultPool1_CNhs10644_tpm_rev NucleusAccumbensAdultPl1- bigWig nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_reverse 1 3478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/nucleus%20accumbens%2c%20adult%2c%20pool1.CNhs10644.10037-101F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10037-101F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusAccumbensAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track NucleusAccumbensAdultPool1_CNhs10644_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10196_CNhs13798_ctss_fwd OccipitalCortexAdultD10196+ bigWig occipital cortex - adult, donor10196_CNhs13798_10172-103C1_forward 0 3479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20cortex%20-%20adult%2c%20donor10196.CNhs13798.10172-103C1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel occipital cortex - adult, donor10196_CNhs13798_10172-103C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10172-103C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexAdultDonor10196_CNhs13798_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10196_CNhs13798_tpm_fwd OccipitalCortexAdultD10196+ bigWig occipital cortex - adult, donor10196_CNhs13798_10172-103C1_forward 1 3479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20cortex%20-%20adult%2c%20donor10196.CNhs13798.10172-103C1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel occipital cortex - adult, donor10196_CNhs13798_10172-103C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10172-103C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexAdultDonor10196_CNhs13798_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10196_CNhs13798_ctss_rev OccipitalCortexAdultD10196- bigWig occipital cortex - adult, donor10196_CNhs13798_10172-103C1_reverse 0 3480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20cortex%20-%20adult%2c%20donor10196.CNhs13798.10172-103C1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel occipital cortex - adult, donor10196_CNhs13798_10172-103C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10172-103C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexAdultDonor10196_CNhs13798_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10196_CNhs13798_tpm_rev OccipitalCortexAdultD10196- bigWig occipital cortex - adult, donor10196_CNhs13798_10172-103C1_reverse 1 3480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20cortex%20-%20adult%2c%20donor10196.CNhs13798.10172-103C1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel occipital cortex - adult, donor10196_CNhs13798_10172-103C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10172-103C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexAdultDonor10196_CNhs13798_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10252_CNhs12320_ctss_fwd OccipitalCortexAdultD10252+ bigWig occipital cortex, adult, donor10252_CNhs12320_10163-103B1_forward 0 3481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20cortex%2c%20adult%2c%20donor10252.CNhs12320.10163-103B1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel occipital cortex, adult, donor10252_CNhs12320_10163-103B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10163-103B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexAdultDonor10252_CNhs12320_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10252_CNhs12320_tpm_fwd OccipitalCortexAdultD10252+ bigWig occipital cortex, adult, donor10252_CNhs12320_10163-103B1_forward 1 3481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20cortex%2c%20adult%2c%20donor10252.CNhs12320.10163-103B1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel occipital cortex, adult, donor10252_CNhs12320_10163-103B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10163-103B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexAdultDonor10252_CNhs12320_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10252_CNhs12320_ctss_rev OccipitalCortexAdultD10252- bigWig occipital cortex, adult, donor10252_CNhs12320_10163-103B1_reverse 0 3482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20cortex%2c%20adult%2c%20donor10252.CNhs12320.10163-103B1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel occipital cortex, adult, donor10252_CNhs12320_10163-103B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10163-103B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexAdultDonor10252_CNhs12320_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10252_CNhs12320_tpm_rev OccipitalCortexAdultD10252- bigWig occipital cortex, adult, donor10252_CNhs12320_10163-103B1_reverse 1 3482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20cortex%2c%20adult%2c%20donor10252.CNhs12320.10163-103B1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel occipital cortex, adult, donor10252_CNhs12320_10163-103B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10163-103B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexAdultDonor10252_CNhs12320_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1\ urlLabel FANTOM5 Details:\ OccipitalCortexNewbornDonor10223_CNhs14073_ctss_fwd OccipitalCortexNbD10223+ bigWig occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_forward 0 3483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20cortex%2c%20newborn%2c%20donor10223.CNhs14073.10355-105E4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10355-105E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexNewbornDonor10223_CNhs14073_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4\ urlLabel FANTOM5 Details:\ OccipitalCortexNewbornDonor10223_CNhs14073_tpm_fwd OccipitalCortexNbD10223+ bigWig occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_forward 1 3483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20cortex%2c%20newborn%2c%20donor10223.CNhs14073.10355-105E4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10355-105E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexNewbornDonor10223_CNhs14073_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4\ urlLabel FANTOM5 Details:\ OccipitalCortexNewbornDonor10223_CNhs14073_ctss_rev OccipitalCortexNbD10223- bigWig occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_reverse 0 3484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20cortex%2c%20newborn%2c%20donor10223.CNhs14073.10355-105E4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10355-105E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexNewbornDonor10223_CNhs14073_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4\ urlLabel FANTOM5 Details:\ OccipitalCortexNewbornDonor10223_CNhs14073_tpm_rev OccipitalCortexNbD10223- bigWig occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_reverse 1 3484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20cortex%2c%20newborn%2c%20donor10223.CNhs14073.10355-105E4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10355-105E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexNewbornDonor10223_CNhs14073_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4\ urlLabel FANTOM5 Details:\ OccipitalLobeAdultDonor1_CNhs11787_ctss_fwd OccipitalLobeAdultD1+ bigWig occipital lobe, adult, donor1_CNhs11787_10076-102A4_forward 0 3485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20lobe%2c%20adult%2c%20donor1.CNhs11787.10076-102A4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel occipital lobe, adult, donor1_CNhs11787_10076-102A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10076-102A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalLobeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalLobeAdultDonor1_CNhs11787_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4\ urlLabel FANTOM5 Details:\ OccipitalLobeAdultDonor1_CNhs11787_tpm_fwd OccipitalLobeAdultD1+ bigWig occipital lobe, adult, donor1_CNhs11787_10076-102A4_forward 1 3485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20lobe%2c%20adult%2c%20donor1.CNhs11787.10076-102A4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel occipital lobe, adult, donor1_CNhs11787_10076-102A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10076-102A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalLobeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalLobeAdultDonor1_CNhs11787_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4\ urlLabel FANTOM5 Details:\ OccipitalLobeAdultDonor1_CNhs11787_ctss_rev OccipitalLobeAdultD1- bigWig occipital lobe, adult, donor1_CNhs11787_10076-102A4_reverse 0 3486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20lobe%2c%20adult%2c%20donor1.CNhs11787.10076-102A4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel occipital lobe, adult, donor1_CNhs11787_10076-102A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10076-102A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalLobeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalLobeAdultDonor1_CNhs11787_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4\ urlLabel FANTOM5 Details:\ OccipitalLobeAdultDonor1_CNhs11787_tpm_rev OccipitalLobeAdultD1- bigWig occipital lobe, adult, donor1_CNhs11787_10076-102A4_reverse 1 3486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20lobe%2c%20adult%2c%20donor1.CNhs11787.10076-102A4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel occipital lobe, adult, donor1_CNhs11787_10076-102A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10076-102A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalLobeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalLobeAdultDonor1_CNhs11787_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4\ urlLabel FANTOM5 Details:\ OccipitalLobeFetalDonor1_CNhs11784_ctss_fwd OccipitalLobeFetalD1+ bigWig occipital lobe, fetal, donor1_CNhs11784_10073-102A1_forward 0 3487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20lobe%2c%20fetal%2c%20donor1.CNhs11784.10073-102A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel occipital lobe, fetal, donor1_CNhs11784_10073-102A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10073-102A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalLobeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalLobeFetalDonor1_CNhs11784_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1\ urlLabel FANTOM5 Details:\ OccipitalLobeFetalDonor1_CNhs11784_tpm_fwd OccipitalLobeFetalD1+ bigWig occipital lobe, fetal, donor1_CNhs11784_10073-102A1_forward 1 3487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20lobe%2c%20fetal%2c%20donor1.CNhs11784.10073-102A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel occipital lobe, fetal, donor1_CNhs11784_10073-102A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10073-102A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalLobeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalLobeFetalDonor1_CNhs11784_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1\ urlLabel FANTOM5 Details:\ OccipitalLobeFetalDonor1_CNhs11784_ctss_rev OccipitalLobeFetalD1- bigWig occipital lobe, fetal, donor1_CNhs11784_10073-102A1_reverse 0 3488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20lobe%2c%20fetal%2c%20donor1.CNhs11784.10073-102A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel occipital lobe, fetal, donor1_CNhs11784_10073-102A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10073-102A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalLobeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalLobeFetalDonor1_CNhs11784_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1\ urlLabel FANTOM5 Details:\ OccipitalLobeFetalDonor1_CNhs11784_tpm_rev OccipitalLobeFetalD1- bigWig occipital lobe, fetal, donor1_CNhs11784_10073-102A1_reverse 1 3488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20lobe%2c%20fetal%2c%20donor1.CNhs11784.10073-102A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel occipital lobe, fetal, donor1_CNhs11784_10073-102A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10073-102A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalLobeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalLobeFetalDonor1_CNhs11784_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1\ urlLabel FANTOM5 Details:\ OccipitalPoleAdultPool1_CNhs10643_ctss_fwd OccipitalPoleAdultPl1+ bigWig occipital pole, adult, pool1_CNhs10643_10036-101E9_forward 0 3489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20pole%2c%20adult%2c%20pool1.CNhs10643.10036-101E9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel occipital pole, adult, pool1_CNhs10643_10036-101E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10036-101E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalPoleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalPoleAdultPool1_CNhs10643_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9\ urlLabel FANTOM5 Details:\ OccipitalPoleAdultPool1_CNhs10643_tpm_fwd OccipitalPoleAdultPl1+ bigWig occipital pole, adult, pool1_CNhs10643_10036-101E9_forward 1 3489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20pole%2c%20adult%2c%20pool1.CNhs10643.10036-101E9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel occipital pole, adult, pool1_CNhs10643_10036-101E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10036-101E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalPoleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalPoleAdultPool1_CNhs10643_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9\ urlLabel FANTOM5 Details:\ OccipitalPoleAdultPool1_CNhs10643_ctss_rev OccipitalPoleAdultPl1- bigWig occipital pole, adult, pool1_CNhs10643_10036-101E9_reverse 0 3490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20pole%2c%20adult%2c%20pool1.CNhs10643.10036-101E9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel occipital pole, adult, pool1_CNhs10643_10036-101E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10036-101E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalPoleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalPoleAdultPool1_CNhs10643_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9\ urlLabel FANTOM5 Details:\ OccipitalPoleAdultPool1_CNhs10643_tpm_rev OccipitalPoleAdultPl1- bigWig occipital pole, adult, pool1_CNhs10643_10036-101E9_reverse 1 3490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/occipital%20pole%2c%20adult%2c%20pool1.CNhs10643.10036-101E9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel occipital pole, adult, pool1_CNhs10643_10036-101E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10036-101E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalPoleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalPoleAdultPool1_CNhs10643_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9\ urlLabel FANTOM5 Details:\ OlfactoryRegionAdult_CNhs12611_ctss_fwd OlfactoryRegionAdult+ bigWig olfactory region, adult_CNhs12611_10195-103E6_forward 0 3491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/olfactory%20region%2c%20adult.CNhs12611.10195-103E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel olfactory region, adult_CNhs12611_10195-103E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10195-103E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryRegionAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OlfactoryRegionAdult_CNhs12611_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6\ urlLabel FANTOM5 Details:\ OlfactoryRegionAdult_CNhs12611_tpm_fwd OlfactoryRegionAdult+ bigWig olfactory region, adult_CNhs12611_10195-103E6_forward 1 3491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/olfactory%20region%2c%20adult.CNhs12611.10195-103E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel olfactory region, adult_CNhs12611_10195-103E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10195-103E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryRegionAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OlfactoryRegionAdult_CNhs12611_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6\ urlLabel FANTOM5 Details:\ OlfactoryRegionAdult_CNhs12611_ctss_rev OlfactoryRegionAdult- bigWig olfactory region, adult_CNhs12611_10195-103E6_reverse 0 3492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/olfactory%20region%2c%20adult.CNhs12611.10195-103E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel olfactory region, adult_CNhs12611_10195-103E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10195-103E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryRegionAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OlfactoryRegionAdult_CNhs12611_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6\ urlLabel FANTOM5 Details:\ OlfactoryRegionAdult_CNhs12611_tpm_rev OlfactoryRegionAdult- bigWig olfactory region, adult_CNhs12611_10195-103E6_reverse 1 3492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/olfactory%20region%2c%20adult.CNhs12611.10195-103E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel olfactory region, adult_CNhs12611_10195-103E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10195-103E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryRegionAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OlfactoryRegionAdult_CNhs12611_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6\ urlLabel FANTOM5 Details:\ OpticNerveDonor1_CNhs13449_ctss_fwd OpticNerveD1+ bigWig optic nerve, donor1_CNhs13449_10277-104E7_forward 0 3493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/optic%20nerve%2c%20donor1.CNhs13449.10277-104E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel optic nerve, donor1_CNhs13449_10277-104E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10277-104E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OpticNerveD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OpticNerveDonor1_CNhs13449_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7\ urlLabel FANTOM5 Details:\ OpticNerveDonor1_CNhs13449_tpm_fwd OpticNerveD1+ bigWig optic nerve, donor1_CNhs13449_10277-104E7_forward 1 3493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/optic%20nerve%2c%20donor1.CNhs13449.10277-104E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel optic nerve, donor1_CNhs13449_10277-104E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10277-104E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OpticNerveD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OpticNerveDonor1_CNhs13449_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7\ urlLabel FANTOM5 Details:\ OpticNerveDonor1_CNhs13449_ctss_rev OpticNerveD1- bigWig optic nerve, donor1_CNhs13449_10277-104E7_reverse 0 3494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/optic%20nerve%2c%20donor1.CNhs13449.10277-104E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel optic nerve, donor1_CNhs13449_10277-104E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10277-104E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OpticNerveD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OpticNerveDonor1_CNhs13449_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7\ urlLabel FANTOM5 Details:\ OpticNerveDonor1_CNhs13449_tpm_rev OpticNerveD1- bigWig optic nerve, donor1_CNhs13449_10277-104E7_reverse 1 3494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/optic%20nerve%2c%20donor1.CNhs13449.10277-104E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel optic nerve, donor1_CNhs13449_10277-104E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10277-104E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OpticNerveD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OpticNerveDonor1_CNhs13449_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7\ urlLabel FANTOM5 Details:\ OvaryAdultPool1_CNhs10626_ctss_fwd OvaryAdultPl1+ bigWig ovary, adult, pool1_CNhs10626_10020-101D2_forward 0 3495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ovary%2c%20adult%2c%20pool1.CNhs10626.10020-101D2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel ovary, adult, pool1_CNhs10626_10020-101D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10020-101D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OvaryAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OvaryAdultPool1_CNhs10626_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2\ urlLabel FANTOM5 Details:\ OvaryAdultPool1_CNhs10626_tpm_fwd OvaryAdultPl1+ bigWig ovary, adult, pool1_CNhs10626_10020-101D2_forward 1 3495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ovary%2c%20adult%2c%20pool1.CNhs10626.10020-101D2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel ovary, adult, pool1_CNhs10626_10020-101D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10020-101D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OvaryAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OvaryAdultPool1_CNhs10626_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2\ urlLabel FANTOM5 Details:\ OvaryAdultPool1_CNhs10626_ctss_rev OvaryAdultPl1- bigWig ovary, adult, pool1_CNhs10626_10020-101D2_reverse 0 3496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ovary%2c%20adult%2c%20pool1.CNhs10626.10020-101D2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel ovary, adult, pool1_CNhs10626_10020-101D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10020-101D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OvaryAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OvaryAdultPool1_CNhs10626_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2\ urlLabel FANTOM5 Details:\ OvaryAdultPool1_CNhs10626_tpm_rev OvaryAdultPl1- bigWig ovary, adult, pool1_CNhs10626_10020-101D2_reverse 1 3496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/ovary%2c%20adult%2c%20pool1.CNhs10626.10020-101D2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel ovary, adult, pool1_CNhs10626_10020-101D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10020-101D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OvaryAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OvaryAdultPool1_CNhs10626_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2\ urlLabel FANTOM5 Details:\ PancreasAdultDonor1_CNhs11756_ctss_fwd PancreasAdultD1+ bigWig pancreas, adult, donor1_CNhs11756_10049-101G4_forward 0 3497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pancreas%2c%20adult%2c%20donor1.CNhs11756.10049-101G4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel pancreas, adult, donor1_CNhs11756_10049-101G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10049-101G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PancreasAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PancreasAdultDonor1_CNhs11756_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4\ urlLabel FANTOM5 Details:\ PancreasAdultDonor1_CNhs11756_tpm_fwd PancreasAdultD1+ bigWig pancreas, adult, donor1_CNhs11756_10049-101G4_forward 1 3497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pancreas%2c%20adult%2c%20donor1.CNhs11756.10049-101G4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel pancreas, adult, donor1_CNhs11756_10049-101G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10049-101G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PancreasAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PancreasAdultDonor1_CNhs11756_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4\ urlLabel FANTOM5 Details:\ PancreasAdultDonor1_CNhs11756_ctss_rev PancreasAdultD1- bigWig pancreas, adult, donor1_CNhs11756_10049-101G4_reverse 0 3498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pancreas%2c%20adult%2c%20donor1.CNhs11756.10049-101G4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel pancreas, adult, donor1_CNhs11756_10049-101G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10049-101G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PancreasAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PancreasAdultDonor1_CNhs11756_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4\ urlLabel FANTOM5 Details:\ PancreasAdultDonor1_CNhs11756_tpm_rev PancreasAdultD1- bigWig pancreas, adult, donor1_CNhs11756_10049-101G4_reverse 1 3498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pancreas%2c%20adult%2c%20donor1.CNhs11756.10049-101G4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel pancreas, adult, donor1_CNhs11756_10049-101G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10049-101G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PancreasAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PancreasAdultDonor1_CNhs11756_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4\ urlLabel FANTOM5 Details:\ ParacentralGyrusAdultPool1_CNhs10642_ctss_fwd ParacentralGyrusAdultPl1+ bigWig paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_forward 0 3499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/paracentral%20gyrus%2c%20adult%2c%20pool1.CNhs10642.10035-101E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10035-101E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParacentralGyrusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParacentralGyrusAdultPool1_CNhs10642_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8\ urlLabel FANTOM5 Details:\ ParacentralGyrusAdultPool1_CNhs10642_tpm_fwd ParacentralGyrusAdultPl1+ bigWig paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_forward 1 3499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/paracentral%20gyrus%2c%20adult%2c%20pool1.CNhs10642.10035-101E8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10035-101E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParacentralGyrusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParacentralGyrusAdultPool1_CNhs10642_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8\ urlLabel FANTOM5 Details:\ ParacentralGyrusAdultPool1_CNhs10642_ctss_rev ParacentralGyrusAdultPl1- bigWig paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_reverse 0 3500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/paracentral%20gyrus%2c%20adult%2c%20pool1.CNhs10642.10035-101E8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10035-101E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParacentralGyrusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParacentralGyrusAdultPool1_CNhs10642_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8\ urlLabel FANTOM5 Details:\ ParacentralGyrusAdultPool1_CNhs10642_tpm_rev ParacentralGyrusAdultPl1- bigWig paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_reverse 1 3500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/paracentral%20gyrus%2c%20adult%2c%20pool1.CNhs10642.10035-101E8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10035-101E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParacentralGyrusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParacentralGyrusAdultPool1_CNhs10642_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8\ urlLabel FANTOM5 Details:\ ParietalCortexAdultDonor10258_CNhs14226_ctss_fwd ParietalCortexAdultD10258+ bigWig parietal cortex, adult, donor10258_CNhs14226_10373-105G4_forward 0 3501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20cortex%2c%20adult%2c%20donor10258.CNhs14226.10373-105G4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel parietal cortex, adult, donor10258_CNhs14226_10373-105G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10373-105G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalCortexAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalCortexAdultDonor10258_CNhs14226_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4\ urlLabel FANTOM5 Details:\ ParietalCortexAdultDonor10258_CNhs14226_tpm_fwd ParietalCortexAdultD10258+ bigWig parietal cortex, adult, donor10258_CNhs14226_10373-105G4_forward 1 3501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20cortex%2c%20adult%2c%20donor10258.CNhs14226.10373-105G4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel parietal cortex, adult, donor10258_CNhs14226_10373-105G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10373-105G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalCortexAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalCortexAdultDonor10258_CNhs14226_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4\ urlLabel FANTOM5 Details:\ ParietalCortexAdultDonor10258_CNhs14226_ctss_rev ParietalCortexAdultD10258- bigWig parietal cortex, adult, donor10258_CNhs14226_10373-105G4_reverse 0 3502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20cortex%2c%20adult%2c%20donor10258.CNhs14226.10373-105G4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel parietal cortex, adult, donor10258_CNhs14226_10373-105G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10373-105G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalCortexAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalCortexAdultDonor10258_CNhs14226_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4\ urlLabel FANTOM5 Details:\ ParietalCortexAdultDonor10258_CNhs14226_tpm_rev ParietalCortexAdultD10258- bigWig parietal cortex, adult, donor10258_CNhs14226_10373-105G4_reverse 1 3502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20cortex%2c%20adult%2c%20donor10258.CNhs14226.10373-105G4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel parietal cortex, adult, donor10258_CNhs14226_10373-105G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10373-105G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalCortexAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalCortexAdultDonor10258_CNhs14226_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10196_CNhs13797_ctss_fwd ParietalLobeAdultD10196+ bigWig parietal lobe - adult, donor10196_CNhs13797_10171-103B9_forward 0 3503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%20-%20adult%2c%20donor10196.CNhs13797.10171-103B9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel parietal lobe - adult, donor10196_CNhs13797_10171-103B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10171-103B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultDonor10196_CNhs13797_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10196_CNhs13797_tpm_fwd ParietalLobeAdultD10196+ bigWig parietal lobe - adult, donor10196_CNhs13797_10171-103B9_forward 1 3503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%20-%20adult%2c%20donor10196.CNhs13797.10171-103B9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel parietal lobe - adult, donor10196_CNhs13797_10171-103B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10171-103B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultDonor10196_CNhs13797_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10196_CNhs13797_ctss_rev ParietalLobeAdultD10196- bigWig parietal lobe - adult, donor10196_CNhs13797_10171-103B9_reverse 0 3504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%20-%20adult%2c%20donor10196.CNhs13797.10171-103B9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel parietal lobe - adult, donor10196_CNhs13797_10171-103B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10171-103B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultDonor10196_CNhs13797_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10196_CNhs13797_tpm_rev ParietalLobeAdultD10196- bigWig parietal lobe - adult, donor10196_CNhs13797_10171-103B9_reverse 1 3504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%20-%20adult%2c%20donor10196.CNhs13797.10171-103B9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel parietal lobe - adult, donor10196_CNhs13797_10171-103B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10171-103B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultDonor10196_CNhs13797_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10252_CNhs12317_ctss_fwd ParietalLobeAdultD10252+ bigWig parietal lobe, adult, donor10252_CNhs12317_10157-103A4_forward 0 3505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%2c%20adult%2c%20donor10252.CNhs12317.10157-103A4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel parietal lobe, adult, donor10252_CNhs12317_10157-103A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10157-103A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultDonor10252_CNhs12317_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10252_CNhs12317_tpm_fwd ParietalLobeAdultD10252+ bigWig parietal lobe, adult, donor10252_CNhs12317_10157-103A4_forward 1 3505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%2c%20adult%2c%20donor10252.CNhs12317.10157-103A4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel parietal lobe, adult, donor10252_CNhs12317_10157-103A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10157-103A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultDonor10252_CNhs12317_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10252_CNhs12317_ctss_rev ParietalLobeAdultD10252- bigWig parietal lobe, adult, donor10252_CNhs12317_10157-103A4_reverse 0 3506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%2c%20adult%2c%20donor10252.CNhs12317.10157-103A4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel parietal lobe, adult, donor10252_CNhs12317_10157-103A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10157-103A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultDonor10252_CNhs12317_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10252_CNhs12317_tpm_rev ParietalLobeAdultD10252- bigWig parietal lobe, adult, donor10252_CNhs12317_10157-103A4_reverse 1 3506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%2c%20adult%2c%20donor10252.CNhs12317.10157-103A4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel parietal lobe, adult, donor10252_CNhs12317_10157-103A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10157-103A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultDonor10252_CNhs12317_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4\ urlLabel FANTOM5 Details:\ ParietalLobeAdultPool1_CNhs10641_ctss_fwd ParietalLobeAdultPl1+ bigWig parietal lobe, adult, pool1_CNhs10641_10034-101E7_forward 0 3507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%2c%20adult%2c%20pool1.CNhs10641.10034-101E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel parietal lobe, adult, pool1_CNhs10641_10034-101E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10034-101E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultPool1_CNhs10641_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7\ urlLabel FANTOM5 Details:\ ParietalLobeAdultPool1_CNhs10641_tpm_fwd ParietalLobeAdultPl1+ bigWig parietal lobe, adult, pool1_CNhs10641_10034-101E7_forward 1 3507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%2c%20adult%2c%20pool1.CNhs10641.10034-101E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel parietal lobe, adult, pool1_CNhs10641_10034-101E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10034-101E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultPool1_CNhs10641_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7\ urlLabel FANTOM5 Details:\ ParietalLobeAdultPool1_CNhs10641_ctss_rev ParietalLobeAdultPl1- bigWig parietal lobe, adult, pool1_CNhs10641_10034-101E7_reverse 0 3508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%2c%20adult%2c%20pool1.CNhs10641.10034-101E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel parietal lobe, adult, pool1_CNhs10641_10034-101E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10034-101E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultPool1_CNhs10641_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7\ urlLabel FANTOM5 Details:\ ParietalLobeAdultPool1_CNhs10641_tpm_rev ParietalLobeAdultPl1- bigWig parietal lobe, adult, pool1_CNhs10641_10034-101E7_reverse 1 3508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%2c%20adult%2c%20pool1.CNhs10641.10034-101E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel parietal lobe, adult, pool1_CNhs10641_10034-101E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10034-101E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultPool1_CNhs10641_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7\ urlLabel FANTOM5 Details:\ ParietalLobeFetalDonor1_CNhs11782_ctss_fwd ParietalLobeFetalD1+ bigWig parietal lobe, fetal, donor1_CNhs11782_10072-101I9_forward 0 3509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%2c%20fetal%2c%20donor1.CNhs11782.10072-101I9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel parietal lobe, fetal, donor1_CNhs11782_10072-101I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10072-101I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeFetalDonor1_CNhs11782_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9\ urlLabel FANTOM5 Details:\ ParietalLobeFetalDonor1_CNhs11782_tpm_fwd ParietalLobeFetalD1+ bigWig parietal lobe, fetal, donor1_CNhs11782_10072-101I9_forward 1 3509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%2c%20fetal%2c%20donor1.CNhs11782.10072-101I9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel parietal lobe, fetal, donor1_CNhs11782_10072-101I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10072-101I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeFetalDonor1_CNhs11782_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9\ urlLabel FANTOM5 Details:\ ParietalLobeFetalDonor1_CNhs11782_ctss_rev ParietalLobeFetalD1- bigWig parietal lobe, fetal, donor1_CNhs11782_10072-101I9_reverse 0 3510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%2c%20fetal%2c%20donor1.CNhs11782.10072-101I9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel parietal lobe, fetal, donor1_CNhs11782_10072-101I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10072-101I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeFetalDonor1_CNhs11782_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9\ urlLabel FANTOM5 Details:\ ParietalLobeFetalDonor1_CNhs11782_tpm_rev ParietalLobeFetalD1- bigWig parietal lobe, fetal, donor1_CNhs11782_10072-101I9_reverse 1 3510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%2c%20fetal%2c%20donor1.CNhs11782.10072-101I9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel parietal lobe, fetal, donor1_CNhs11782_10072-101I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10072-101I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeFetalDonor1_CNhs11782_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9\ urlLabel FANTOM5 Details:\ ParietalLobeNewbornDonor10223_CNhs14074_ctss_fwd ParietalLobeNbD10223+ bigWig parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_forward 0 3511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%2c%20newborn%2c%20donor10223.CNhs14074.10356-105E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10356-105E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeNewbornDonor10223_CNhs14074_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5\ urlLabel FANTOM5 Details:\ ParietalLobeNewbornDonor10223_CNhs14074_tpm_fwd ParietalLobeNbD10223+ bigWig parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_forward 1 3511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%2c%20newborn%2c%20donor10223.CNhs14074.10356-105E5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10356-105E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeNewbornDonor10223_CNhs14074_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5\ urlLabel FANTOM5 Details:\ ParietalLobeNewbornDonor10223_CNhs14074_ctss_rev ParietalLobeNbD10223- bigWig parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_reverse 0 3512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%2c%20newborn%2c%20donor10223.CNhs14074.10356-105E5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10356-105E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeNewbornDonor10223_CNhs14074_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5\ urlLabel FANTOM5 Details:\ ParietalLobeNewbornDonor10223_CNhs14074_tpm_rev ParietalLobeNbD10223- bigWig parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_reverse 1 3512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parietal%20lobe%2c%20newborn%2c%20donor10223.CNhs14074.10356-105E5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10356-105E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeNewbornDonor10223_CNhs14074_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5\ urlLabel FANTOM5 Details:\ ParotidGlandAdult_CNhs12849_ctss_fwd ParotidGlandAdult+ bigWig parotid gland, adult_CNhs12849_10199-103F1_forward 0 3513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parotid%20gland%2c%20adult.CNhs12849.10199-103F1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel parotid gland, adult_CNhs12849_10199-103F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10199-103F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParotidGlandAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParotidGlandAdult_CNhs12849_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1\ urlLabel FANTOM5 Details:\ ParotidGlandAdult_CNhs12849_tpm_fwd ParotidGlandAdult+ bigWig parotid gland, adult_CNhs12849_10199-103F1_forward 1 3513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parotid%20gland%2c%20adult.CNhs12849.10199-103F1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel parotid gland, adult_CNhs12849_10199-103F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10199-103F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParotidGlandAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParotidGlandAdult_CNhs12849_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1\ urlLabel FANTOM5 Details:\ ParotidGlandAdult_CNhs12849_ctss_rev ParotidGlandAdult- bigWig parotid gland, adult_CNhs12849_10199-103F1_reverse 0 3514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parotid%20gland%2c%20adult.CNhs12849.10199-103F1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel parotid gland, adult_CNhs12849_10199-103F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10199-103F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParotidGlandAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParotidGlandAdult_CNhs12849_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1\ urlLabel FANTOM5 Details:\ ParotidGlandAdult_CNhs12849_tpm_rev ParotidGlandAdult- bigWig parotid gland, adult_CNhs12849_10199-103F1_reverse 1 3514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/parotid%20gland%2c%20adult.CNhs12849.10199-103F1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel parotid gland, adult_CNhs12849_10199-103F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10199-103F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParotidGlandAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParotidGlandAdult_CNhs12849_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1\ urlLabel FANTOM5 Details:\ PenisAdult_CNhs12850_ctss_fwd PenisAdult+ bigWig penis, adult_CNhs12850_10200-103F2_forward 0 3515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/penis%2c%20adult.CNhs12850.10200-103F2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel penis, adult_CNhs12850_10200-103F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10200-103F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PenisAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PenisAdult_CNhs12850_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2\ urlLabel FANTOM5 Details:\ PenisAdult_CNhs12850_tpm_fwd PenisAdult+ bigWig penis, adult_CNhs12850_10200-103F2_forward 1 3515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/penis%2c%20adult.CNhs12850.10200-103F2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel penis, adult_CNhs12850_10200-103F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10200-103F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PenisAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PenisAdult_CNhs12850_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2\ urlLabel FANTOM5 Details:\ PenisAdult_CNhs12850_ctss_rev PenisAdult- bigWig penis, adult_CNhs12850_10200-103F2_reverse 0 3516 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/penis%2c%20adult.CNhs12850.10200-103F2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel penis, adult_CNhs12850_10200-103F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10200-103F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PenisAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PenisAdult_CNhs12850_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2\ urlLabel FANTOM5 Details:\ PenisAdult_CNhs12850_tpm_rev PenisAdult- bigWig penis, adult_CNhs12850_10200-103F2_reverse 1 3516 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/penis%2c%20adult.CNhs12850.10200-103F2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel penis, adult_CNhs12850_10200-103F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10200-103F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PenisAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PenisAdult_CNhs12850_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10196_CNhs13804_ctss_fwd PinealGlandAdultD10196+ bigWig pineal gland - adult, donor10196_CNhs13804_10179-103C8_forward 0 3517 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pineal%20gland%20-%20adult%2c%20donor10196.CNhs13804.10179-103C8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel pineal gland - adult, donor10196_CNhs13804_10179-103C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10179-103C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PinealGlandAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PinealGlandAdultDonor10196_CNhs13804_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10196_CNhs13804_tpm_fwd PinealGlandAdultD10196+ bigWig pineal gland - adult, donor10196_CNhs13804_10179-103C8_forward 1 3517 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pineal%20gland%20-%20adult%2c%20donor10196.CNhs13804.10179-103C8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel pineal gland - adult, donor10196_CNhs13804_10179-103C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10179-103C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PinealGlandAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PinealGlandAdultDonor10196_CNhs13804_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10196_CNhs13804_ctss_rev PinealGlandAdultD10196- bigWig pineal gland - adult, donor10196_CNhs13804_10179-103C8_reverse 0 3518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pineal%20gland%20-%20adult%2c%20donor10196.CNhs13804.10179-103C8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel pineal gland - adult, donor10196_CNhs13804_10179-103C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10179-103C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PinealGlandAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PinealGlandAdultDonor10196_CNhs13804_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10196_CNhs13804_tpm_rev PinealGlandAdultD10196- bigWig pineal gland - adult, donor10196_CNhs13804_10179-103C8_reverse 1 3518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pineal%20gland%20-%20adult%2c%20donor10196.CNhs13804.10179-103C8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel pineal gland - adult, donor10196_CNhs13804_10179-103C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10179-103C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PinealGlandAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PinealGlandAdultDonor10196_CNhs13804_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10252_CNhs12228_ctss_fwd PinealGlandAdultD10252+ bigWig pineal gland, adult, donor10252_CNhs12228_10160-103A7_forward 0 3519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10160-103A7 regulation 0 bigDataUrl 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PinealGlandAdultDonor10258_CNhs14230_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10377-105G8\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10196_CNhs13805_ctss_fwd PituitaryGlandAdultD10196+ bigWig pituitary gland - adult, donor10196_CNhs13805_10180-103C9_forward 0 3523 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pituitary%20gland%20-%20adult%2c%20donor10196.CNhs13805.10180-103C9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel pituitary gland - adult, donor10196_CNhs13805_10180-103C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10180-103C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PituitaryGlandAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PituitaryGlandAdultDonor10196_CNhs13805_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9\ urlLabel FANTOM5 Details:\ 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bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10252_CNhs12229_ctss_rev PituitaryGlandAdultD10252- bigWig pituitary gland, adult, donor10252_CNhs12229_10162-103A9_reverse 0 3526 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pituitary%20gland%2c%20adult%2c%20donor10252.CNhs12229.10162-103A9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel pituitary gland, adult, donor10252_CNhs12229_10162-103A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10162-103A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PituitaryGlandAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PituitaryGlandAdultDonor10252_CNhs12229_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10252_CNhs12229_tpm_rev PituitaryGlandAdultD10252- bigWig pituitary 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/gbdb/hg19/fantom5/pituitary%20gland%2c%20adult%2c%20donor10258.CNhs14231.10378-105G9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel pituitary gland, adult, donor10258_CNhs14231_10378-105G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10378-105G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PituitaryGlandAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PituitaryGlandAdultDonor10258_CNhs14231_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10258_CNhs14231_tpm_fwd PituitaryGlandAdultD10258+ bigWig pituitary gland, adult, donor10258_CNhs14231_10378-105G9_forward 1 3527 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pituitary%20gland%2c%20adult%2c%20donor10258.CNhs14231.10378-105G9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel pituitary gland, adult, donor10258_CNhs14231_10378-105G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10378-105G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PituitaryGlandAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PituitaryGlandAdultDonor10258_CNhs14231_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10258_CNhs14231_ctss_rev PituitaryGlandAdultD10258- bigWig pituitary gland, adult, donor10258_CNhs14231_10378-105G9_reverse 0 3528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pituitary%20gland%2c%20adult%2c%20donor10258.CNhs14231.10378-105G9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel pituitary gland, adult, donor10258_CNhs14231_10378-105G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10378-105G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PituitaryGlandAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PituitaryGlandAdultDonor10258_CNhs14231_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10258_CNhs14231_tpm_rev PituitaryGlandAdultD10258- bigWig pituitary gland, adult, donor10258_CNhs14231_10378-105G9_reverse 1 3528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pituitary%20gland%2c%20adult%2c%20donor10258.CNhs14231.10378-105G9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel pituitary gland, adult, donor10258_CNhs14231_10378-105G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10378-105G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PituitaryGlandAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PituitaryGlandAdultDonor10258_CNhs14231_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9\ urlLabel FANTOM5 Details:\ PlacentaAdultPool1_CNhs10627_ctss_fwd PlacentaAdultPl1+ bigWig placenta, adult, pool1_CNhs10627_10021-101D3_forward 0 3529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/placenta%2c%20adult%2c%20pool1.CNhs10627.10021-101D3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel placenta, adult, pool1_CNhs10627_10021-101D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10021-101D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PlacentaAdultPool1_CNhs10627_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3\ urlLabel FANTOM5 Details:\ PlacentaAdultPool1_CNhs10627_tpm_fwd PlacentaAdultPl1+ bigWig placenta, adult, pool1_CNhs10627_10021-101D3_forward 1 3529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/placenta%2c%20adult%2c%20pool1.CNhs10627.10021-101D3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel placenta, adult, pool1_CNhs10627_10021-101D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10021-101D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PlacentaAdultPool1_CNhs10627_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3\ urlLabel FANTOM5 Details:\ PlacentaAdultPool1_CNhs10627_ctss_rev PlacentaAdultPl1- bigWig placenta, adult, pool1_CNhs10627_10021-101D3_reverse 0 3530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/placenta%2c%20adult%2c%20pool1.CNhs10627.10021-101D3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel placenta, adult, pool1_CNhs10627_10021-101D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10021-101D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PlacentaAdultPool1_CNhs10627_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3\ urlLabel FANTOM5 Details:\ PlacentaAdultPool1_CNhs10627_tpm_rev PlacentaAdultPl1- bigWig placenta, adult, pool1_CNhs10627_10021-101D3_reverse 1 3530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/placenta%2c%20adult%2c%20pool1.CNhs10627.10021-101D3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel placenta, adult, pool1_CNhs10627_10021-101D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10021-101D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PlacentaAdultPool1_CNhs10627_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3\ urlLabel FANTOM5 Details:\ PonsAdultPool1_CNhs10640_ctss_fwd PonsAdultPl1+ bigWig pons, adult, pool1_CNhs10640_10033-101E6_forward 0 3531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pons%2c%20adult%2c%20pool1.CNhs10640.10033-101E6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel pons, adult, pool1_CNhs10640_10033-101E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10033-101E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PonsAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PonsAdultPool1_CNhs10640_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6\ urlLabel FANTOM5 Details:\ PonsAdultPool1_CNhs10640_tpm_fwd PonsAdultPl1+ bigWig pons, adult, pool1_CNhs10640_10033-101E6_forward 1 3531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pons%2c%20adult%2c%20pool1.CNhs10640.10033-101E6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel pons, adult, pool1_CNhs10640_10033-101E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10033-101E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PonsAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PonsAdultPool1_CNhs10640_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6\ urlLabel FANTOM5 Details:\ PonsAdultPool1_CNhs10640_ctss_rev PonsAdultPl1- bigWig pons, adult, pool1_CNhs10640_10033-101E6_reverse 0 3532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pons%2c%20adult%2c%20pool1.CNhs10640.10033-101E6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel pons, adult, pool1_CNhs10640_10033-101E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10033-101E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PonsAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PonsAdultPool1_CNhs10640_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6\ urlLabel FANTOM5 Details:\ PonsAdultPool1_CNhs10640_tpm_rev PonsAdultPl1- bigWig pons, adult, pool1_CNhs10640_10033-101E6_reverse 1 3532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/pons%2c%20adult%2c%20pool1.CNhs10640.10033-101E6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel pons, adult, pool1_CNhs10640_10033-101E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10033-101E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PonsAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PonsAdultPool1_CNhs10640_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6\ urlLabel FANTOM5 Details:\ PostcentralGyrusAdultPool1_CNhs10638_ctss_fwd PostcentralGyrusAdultPl1+ bigWig postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_forward 0 3533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/postcentral%20gyrus%2c%20adult%2c%20pool1.CNhs10638.10032-101E5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10032-101E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PostcentralGyrusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PostcentralGyrusAdultPool1_CNhs10638_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5\ urlLabel FANTOM5 Details:\ PostcentralGyrusAdultPool1_CNhs10638_tpm_fwd PostcentralGyrusAdultPl1+ bigWig postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_forward 1 3533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/postcentral%20gyrus%2c%20adult%2c%20pool1.CNhs10638.10032-101E5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10032-101E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PostcentralGyrusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PostcentralGyrusAdultPool1_CNhs10638_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5\ urlLabel FANTOM5 Details:\ PostcentralGyrusAdultPool1_CNhs10638_ctss_rev PostcentralGyrusAdultPl1- bigWig postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_reverse 0 3534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/postcentral%20gyrus%2c%20adult%2c%20pool1.CNhs10638.10032-101E5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10032-101E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PostcentralGyrusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PostcentralGyrusAdultPool1_CNhs10638_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5\ urlLabel FANTOM5 Details:\ PostcentralGyrusAdultPool1_CNhs10638_tpm_rev PostcentralGyrusAdultPl1- bigWig postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_reverse 1 3534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/postcentral%20gyrus%2c%20adult%2c%20pool1.CNhs10638.10032-101E5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10032-101E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PostcentralGyrusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PostcentralGyrusAdultPool1_CNhs10638_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5\ urlLabel FANTOM5 Details:\ ProstateAdultPool1_CNhs10628_ctss_fwd ProstateAdultPl1+ bigWig prostate, adult, pool1_CNhs10628_10022-101D4_forward 0 3535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/prostate%2c%20adult%2c%20pool1.CNhs10628.10022-101D4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel prostate, adult, pool1_CNhs10628_10022-101D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10022-101D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ProstateAdultPool1_CNhs10628_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4\ urlLabel FANTOM5 Details:\ ProstateAdultPool1_CNhs10628_tpm_fwd ProstateAdultPl1+ bigWig prostate, adult, pool1_CNhs10628_10022-101D4_forward 1 3535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/prostate%2c%20adult%2c%20pool1.CNhs10628.10022-101D4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel prostate, adult, pool1_CNhs10628_10022-101D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10022-101D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ProstateAdultPool1_CNhs10628_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4\ urlLabel FANTOM5 Details:\ ProstateAdultPool1_CNhs10628_ctss_rev ProstateAdultPl1- bigWig prostate, adult, pool1_CNhs10628_10022-101D4_reverse 0 3536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/prostate%2c%20adult%2c%20pool1.CNhs10628.10022-101D4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel prostate, adult, pool1_CNhs10628_10022-101D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10022-101D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ProstateAdultPool1_CNhs10628_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4\ urlLabel FANTOM5 Details:\ ProstateAdultPool1_CNhs10628_tpm_rev ProstateAdultPl1- bigWig prostate, adult, pool1_CNhs10628_10022-101D4_reverse 1 3536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/prostate%2c%20adult%2c%20pool1.CNhs10628.10022-101D4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel prostate, adult, pool1_CNhs10628_10022-101D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10022-101D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ProstateAdultPool1_CNhs10628_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10196_CNhs12324_ctss_fwd PutamenAdultD10196+ bigWig putamen, adult, donor10196_CNhs12324_10176-103C5_forward 0 3537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20adult%2c%20donor10196.CNhs12324.10176-103C5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10196_CNhs12324_10176-103C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10176-103C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10196_CNhs12324_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10196_CNhs12324_tpm_fwd PutamenAdultD10196+ bigWig putamen, adult, donor10196_CNhs12324_10176-103C5_forward 1 3537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20adult%2c%20donor10196.CNhs12324.10176-103C5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10196_CNhs12324_10176-103C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10176-103C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10196_CNhs12324_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10196_CNhs12324_ctss_rev PutamenAdultD10196- bigWig putamen, adult, donor10196_CNhs12324_10176-103C5_reverse 0 3538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20adult%2c%20donor10196.CNhs12324.10176-103C5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10196_CNhs12324_10176-103C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10176-103C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10196_CNhs12324_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10196_CNhs12324_tpm_rev PutamenAdultD10196- bigWig putamen, adult, donor10196_CNhs12324_10176-103C5_reverse 1 3538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20adult%2c%20donor10196.CNhs12324.10176-103C5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10196_CNhs12324_10176-103C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10176-103C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10196_CNhs12324_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10252_CNhs13912_ctss_fwd PutamenAdultD10252+ bigWig putamen, adult, donor10252_CNhs13912_10152-102I8_forward 0 3539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20adult%2c%20donor10252.CNhs13912.10152-102I8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10252_CNhs13912_10152-102I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10152-102I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10252_CNhs13912_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10252_CNhs13912_tpm_fwd PutamenAdultD10252+ bigWig putamen, adult, donor10252_CNhs13912_10152-102I8_forward 1 3539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20adult%2c%20donor10252.CNhs13912.10152-102I8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10252_CNhs13912_10152-102I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10152-102I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10252_CNhs13912_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10252_CNhs13912_ctss_rev PutamenAdultD10252- bigWig putamen, adult, donor10252_CNhs13912_10152-102I8_reverse 0 3540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20adult%2c%20donor10252.CNhs13912.10152-102I8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10252_CNhs13912_10152-102I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10152-102I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10252_CNhs13912_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10252_CNhs13912_tpm_rev PutamenAdultD10252- bigWig putamen, adult, donor10252_CNhs13912_10152-102I8_reverse 1 3540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20adult%2c%20donor10252.CNhs13912.10152-102I8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10252_CNhs13912_10152-102I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10152-102I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10252_CNhs13912_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep1_CNhs14225_ctss_fwd PutamenAdultD10258Tr1+ bigWig putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_forward 0 3541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14225.10372-105G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10258TechRep1_CNhs14225_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep1_CNhs14225_tpm_fwd PutamenAdultD10258Tr1+ bigWig putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_forward 1 3541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14225.10372-105G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10258TechRep1_CNhs14225_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep1_CNhs14225_ctss_rev PutamenAdultD10258Tr1- bigWig putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_reverse 0 3542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14225.10372-105G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10258TechRep1_CNhs14225_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep1_CNhs14225_tpm_rev PutamenAdultD10258Tr1- bigWig putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_reverse 1 3542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14225.10372-105G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10258TechRep1_CNhs14225_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep2_CNhs14618_ctss_fwd PutamenAdultD10258Tr2+ bigWig putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_forward 0 3543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14618.10372-105G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10258TechRep2_CNhs14618_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep2_CNhs14618_tpm_fwd PutamenAdultD10258Tr2+ bigWig putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_forward 1 3543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14618.10372-105G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10258TechRep2_CNhs14618_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep2_CNhs14618_ctss_rev PutamenAdultD10258Tr2- bigWig putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_reverse 0 3544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14618.10372-105G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10258TechRep2_CNhs14618_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep2_CNhs14618_tpm_rev PutamenAdultD10258Tr2- bigWig putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_reverse 1 3544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14618.10372-105G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10258TechRep2_CNhs14618_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenNewbornDonor10223_CNhs14083_ctss_fwd PutamenNbD10223+ bigWig putamen, newborn, donor10223_CNhs14083_10365-105F5_forward 0 3545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20newborn%2c%20donor10223.CNhs14083.10365-105F5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel putamen, newborn, donor10223_CNhs14083_10365-105F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10365-105F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenNewbornDonor10223_CNhs14083_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5\ urlLabel FANTOM5 Details:\ PutamenNewbornDonor10223_CNhs14083_tpm_fwd PutamenNbD10223+ bigWig putamen, newborn, donor10223_CNhs14083_10365-105F5_forward 1 3545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20newborn%2c%20donor10223.CNhs14083.10365-105F5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel putamen, newborn, donor10223_CNhs14083_10365-105F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10365-105F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenNewbornDonor10223_CNhs14083_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5\ urlLabel FANTOM5 Details:\ PutamenNewbornDonor10223_CNhs14083_ctss_rev PutamenNbD10223- bigWig putamen, newborn, donor10223_CNhs14083_10365-105F5_reverse 0 3546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20newborn%2c%20donor10223.CNhs14083.10365-105F5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel putamen, newborn, donor10223_CNhs14083_10365-105F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10365-105F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenNewbornDonor10223_CNhs14083_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5\ urlLabel FANTOM5 Details:\ PutamenNewbornDonor10223_CNhs14083_tpm_rev PutamenNbD10223- bigWig putamen, newborn, donor10223_CNhs14083_10365-105F5_reverse 1 3546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/putamen%2c%20newborn%2c%20donor10223.CNhs14083.10365-105F5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel putamen, newborn, donor10223_CNhs14083_10365-105F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10365-105F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenNewbornDonor10223_CNhs14083_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5\ urlLabel FANTOM5 Details:\ RectumFetalDonor1_CNhs11777_ctss_fwd RectumFetalD1+ bigWig rectum, fetal, donor1_CNhs11777_10067-101I4_forward 0 3547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/rectum%2c%20fetal%2c%20donor1.CNhs11777.10067-101I4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel rectum, fetal, donor1_CNhs11777_10067-101I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10067-101I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RectumFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track RectumFetalDonor1_CNhs11777_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4\ urlLabel FANTOM5 Details:\ RectumFetalDonor1_CNhs11777_tpm_fwd RectumFetalD1+ bigWig rectum, fetal, donor1_CNhs11777_10067-101I4_forward 1 3547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/rectum%2c%20fetal%2c%20donor1.CNhs11777.10067-101I4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel rectum, fetal, donor1_CNhs11777_10067-101I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10067-101I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RectumFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track RectumFetalDonor1_CNhs11777_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4\ urlLabel FANTOM5 Details:\ RectumFetalDonor1_CNhs11777_ctss_rev RectumFetalD1- bigWig rectum, fetal, donor1_CNhs11777_10067-101I4_reverse 0 3548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/rectum%2c%20fetal%2c%20donor1.CNhs11777.10067-101I4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel rectum, fetal, donor1_CNhs11777_10067-101I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10067-101I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RectumFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track RectumFetalDonor1_CNhs11777_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4\ urlLabel FANTOM5 Details:\ RectumFetalDonor1_CNhs11777_tpm_rev RectumFetalD1- bigWig rectum, fetal, donor1_CNhs11777_10067-101I4_reverse 1 3548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/rectum%2c%20fetal%2c%20donor1.CNhs11777.10067-101I4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel rectum, fetal, donor1_CNhs11777_10067-101I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10067-101I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RectumFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track RectumFetalDonor1_CNhs11777_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4\ urlLabel FANTOM5 Details:\ RetinaAdultPool1_CNhs10636_ctss_fwd RetinaAdultPl1+ bigWig retina, adult, pool1_CNhs10636_10030-101E3_forward 0 3549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/retina%2c%20adult%2c%20pool1.CNhs10636.10030-101E3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel retina, adult, pool1_CNhs10636_10030-101E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10030-101E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RetinaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track RetinaAdultPool1_CNhs10636_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3\ urlLabel FANTOM5 Details:\ RetinaAdultPool1_CNhs10636_tpm_fwd RetinaAdultPl1+ bigWig retina, adult, pool1_CNhs10636_10030-101E3_forward 1 3549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/retina%2c%20adult%2c%20pool1.CNhs10636.10030-101E3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel retina, adult, pool1_CNhs10636_10030-101E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10030-101E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RetinaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track RetinaAdultPool1_CNhs10636_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3\ urlLabel FANTOM5 Details:\ RetinaAdultPool1_CNhs10636_ctss_rev RetinaAdultPl1- bigWig retina, adult, pool1_CNhs10636_10030-101E3_reverse 0 3550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/retina%2c%20adult%2c%20pool1.CNhs10636.10030-101E3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel retina, adult, pool1_CNhs10636_10030-101E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10030-101E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RetinaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track RetinaAdultPool1_CNhs10636_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3\ urlLabel FANTOM5 Details:\ RetinaAdultPool1_CNhs10636_tpm_rev RetinaAdultPl1- bigWig retina, adult, pool1_CNhs10636_10030-101E3_reverse 1 3550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/retina%2c%20adult%2c%20pool1.CNhs10636.10030-101E3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel retina, adult, pool1_CNhs10636_10030-101E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10030-101E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RetinaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track RetinaAdultPool1_CNhs10636_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3\ urlLabel FANTOM5 Details:\ SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_ctss_fwd SabiosciencesXpressrefUniversalPl1+ bigWig SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_forward 0 3551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/SABiosciences%20XpressRef%20Human%20Universal%20Total%20RNA%2c%20pool1.CNhs10610.10002-101A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10002-101A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SabiosciencesXpressrefUniversalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5\ urlLabel FANTOM5 Details:\ SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_tpm_fwd SabiosciencesXpressrefUniversalPl1+ bigWig SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_forward 1 3551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/SABiosciences%20XpressRef%20Human%20Universal%20Total%20RNA%2c%20pool1.CNhs10610.10002-101A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10002-101A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SabiosciencesXpressrefUniversalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5\ urlLabel FANTOM5 Details:\ SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_ctss_rev SabiosciencesXpressrefUniversalPl1- bigWig SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_reverse 0 3552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/SABiosciences%20XpressRef%20Human%20Universal%20Total%20RNA%2c%20pool1.CNhs10610.10002-101A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10002-101A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SabiosciencesXpressrefUniversalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5\ urlLabel FANTOM5 Details:\ SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_tpm_rev SabiosciencesXpressrefUniversalPl1- bigWig SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_reverse 1 3552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/SABiosciences%20XpressRef%20Human%20Universal%20Total%20RNA%2c%20pool1.CNhs10610.10002-101A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10002-101A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SabiosciencesXpressrefUniversalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5\ urlLabel FANTOM5 Details:\ SalivaryGlandAdultPool1_CNhs11677_ctss_fwd SalivaryGlandAdultPl1+ bigWig salivary gland, adult, pool1_CNhs11677_10093-102C3_forward 0 3553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/salivary%20gland%2c%20adult%2c%20pool1.CNhs11677.10093-102C3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel salivary gland, adult, pool1_CNhs11677_10093-102C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10093-102C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryGlandAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SalivaryGlandAdultPool1_CNhs11677_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3\ urlLabel FANTOM5 Details:\ SalivaryGlandAdultPool1_CNhs11677_tpm_fwd SalivaryGlandAdultPl1+ bigWig salivary gland, adult, pool1_CNhs11677_10093-102C3_forward 1 3553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/salivary%20gland%2c%20adult%2c%20pool1.CNhs11677.10093-102C3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel salivary gland, adult, pool1_CNhs11677_10093-102C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10093-102C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryGlandAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SalivaryGlandAdultPool1_CNhs11677_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3\ urlLabel FANTOM5 Details:\ SalivaryGlandAdultPool1_CNhs11677_ctss_rev SalivaryGlandAdultPl1- bigWig salivary gland, adult, pool1_CNhs11677_10093-102C3_reverse 0 3554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/salivary%20gland%2c%20adult%2c%20pool1.CNhs11677.10093-102C3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel salivary gland, adult, pool1_CNhs11677_10093-102C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10093-102C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryGlandAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SalivaryGlandAdultPool1_CNhs11677_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3\ urlLabel FANTOM5 Details:\ SalivaryGlandAdultPool1_CNhs11677_tpm_rev SalivaryGlandAdultPl1- bigWig salivary gland, adult, pool1_CNhs11677_10093-102C3_reverse 1 3554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/salivary%20gland%2c%20adult%2c%20pool1.CNhs11677.10093-102C3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel salivary gland, adult, pool1_CNhs11677_10093-102C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10093-102C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryGlandAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SalivaryGlandAdultPool1_CNhs11677_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3\ urlLabel FANTOM5 Details:\ SeminalVesicleAdult_CNhs12851_ctss_fwd SeminalVesicleAdult+ bigWig seminal vesicle, adult_CNhs12851_10201-103F3_forward 0 3555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/seminal%20vesicle%2c%20adult.CNhs12851.10201-103F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel seminal vesicle, adult_CNhs12851_10201-103F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10201-103F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SeminalVesicleAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SeminalVesicleAdult_CNhs12851_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3\ urlLabel FANTOM5 Details:\ SeminalVesicleAdult_CNhs12851_tpm_fwd SeminalVesicleAdult+ bigWig seminal vesicle, adult_CNhs12851_10201-103F3_forward 1 3555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/seminal%20vesicle%2c%20adult.CNhs12851.10201-103F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel seminal vesicle, adult_CNhs12851_10201-103F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10201-103F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SeminalVesicleAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SeminalVesicleAdult_CNhs12851_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3\ urlLabel FANTOM5 Details:\ SeminalVesicleAdult_CNhs12851_ctss_rev SeminalVesicleAdult- bigWig seminal vesicle, adult_CNhs12851_10201-103F3_reverse 0 3556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/seminal%20vesicle%2c%20adult.CNhs12851.10201-103F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel seminal vesicle, adult_CNhs12851_10201-103F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10201-103F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SeminalVesicleAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SeminalVesicleAdult_CNhs12851_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3\ urlLabel FANTOM5 Details:\ SeminalVesicleAdult_CNhs12851_tpm_rev SeminalVesicleAdult- bigWig seminal vesicle, adult_CNhs12851_10201-103F3_reverse 1 3556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/seminal%20vesicle%2c%20adult.CNhs12851.10201-103F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel seminal vesicle, adult_CNhs12851_10201-103F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10201-103F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SeminalVesicleAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SeminalVesicleAdult_CNhs12851_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3\ urlLabel FANTOM5 Details:\ SkeletalMuscleAdultPool1_CNhs10629_ctss_fwd SkeletalMuscleAdultPl1+ bigWig skeletal muscle, adult, pool1_CNhs10629_10023-101D5_forward 0 3557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skeletal%20muscle%2c%20adult%2c%20pool1.CNhs10629.10023-101D5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel skeletal muscle, adult, pool1_CNhs10629_10023-101D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10023-101D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleAdultPool1_CNhs10629_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5\ urlLabel FANTOM5 Details:\ SkeletalMuscleAdultPool1_CNhs10629_tpm_fwd SkeletalMuscleAdultPl1+ bigWig skeletal muscle, adult, pool1_CNhs10629_10023-101D5_forward 1 3557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skeletal%20muscle%2c%20adult%2c%20pool1.CNhs10629.10023-101D5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel skeletal muscle, adult, pool1_CNhs10629_10023-101D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10023-101D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleAdultPool1_CNhs10629_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5\ urlLabel FANTOM5 Details:\ SkeletalMuscleAdultPool1_CNhs10629_ctss_rev SkeletalMuscleAdultPl1- bigWig skeletal muscle, adult, pool1_CNhs10629_10023-101D5_reverse 0 3558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skeletal%20muscle%2c%20adult%2c%20pool1.CNhs10629.10023-101D5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel skeletal muscle, adult, pool1_CNhs10629_10023-101D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10023-101D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleAdultPool1_CNhs10629_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5\ urlLabel FANTOM5 Details:\ SkeletalMuscleAdultPool1_CNhs10629_tpm_rev SkeletalMuscleAdultPl1- bigWig skeletal muscle, adult, pool1_CNhs10629_10023-101D5_reverse 1 3558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skeletal%20muscle%2c%20adult%2c%20pool1.CNhs10629.10023-101D5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel skeletal muscle, adult, pool1_CNhs10629_10023-101D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10023-101D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleAdultPool1_CNhs10629_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5\ urlLabel FANTOM5 Details:\ SkeletalMuscleFetalDonor1_CNhs11776_ctss_fwd SkeletalMuscleFetalD1+ bigWig skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_forward 0 3559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skeletal%20muscle%2c%20fetal%2c%20donor1.CNhs11776.10066-101I3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10066-101I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleFetalDonor1_CNhs11776_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3\ urlLabel FANTOM5 Details:\ SkeletalMuscleFetalDonor1_CNhs11776_tpm_fwd SkeletalMuscleFetalD1+ bigWig skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_forward 1 3559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skeletal%20muscle%2c%20fetal%2c%20donor1.CNhs11776.10066-101I3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10066-101I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleFetalDonor1_CNhs11776_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3\ urlLabel FANTOM5 Details:\ SkeletalMuscleFetalDonor1_CNhs11776_ctss_rev SkeletalMuscleFetalD1- bigWig skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_reverse 0 3560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skeletal%20muscle%2c%20fetal%2c%20donor1.CNhs11776.10066-101I3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10066-101I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleFetalDonor1_CNhs11776_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3\ urlLabel FANTOM5 Details:\ SkeletalMuscleFetalDonor1_CNhs11776_tpm_rev SkeletalMuscleFetalD1- bigWig skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_reverse 1 3560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skeletal%20muscle%2c%20fetal%2c%20donor1.CNhs11776.10066-101I3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10066-101I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleFetalDonor1_CNhs11776_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3\ urlLabel FANTOM5 Details:\ SkeletalMuscleSoleusMuscleDonor1_CNhs13454_ctss_fwd SkeletalMuscleSoleusMuscleD1+ bigWig skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_forward 0 3561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skeletal%20muscle%20-%20soleus%20muscle%2c%20donor1.CNhs13454.10282-104F3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10282-104F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleSoleusMuscleD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleSoleusMuscleDonor1_CNhs13454_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3\ urlLabel FANTOM5 Details:\ SkeletalMuscleSoleusMuscleDonor1_CNhs13454_tpm_fwd SkeletalMuscleSoleusMuscleD1+ bigWig skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_forward 1 3561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skeletal%20muscle%20-%20soleus%20muscle%2c%20donor1.CNhs13454.10282-104F3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10282-104F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleSoleusMuscleD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleSoleusMuscleDonor1_CNhs13454_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3\ urlLabel FANTOM5 Details:\ SkeletalMuscleSoleusMuscleDonor1_CNhs13454_ctss_rev SkeletalMuscleSoleusMuscleD1- bigWig skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_reverse 0 3562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skeletal%20muscle%20-%20soleus%20muscle%2c%20donor1.CNhs13454.10282-104F3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10282-104F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleSoleusMuscleD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleSoleusMuscleDonor1_CNhs13454_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3\ urlLabel FANTOM5 Details:\ SkeletalMuscleSoleusMuscleDonor1_CNhs13454_tpm_rev SkeletalMuscleSoleusMuscleD1- bigWig skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_reverse 1 3562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skeletal%20muscle%20-%20soleus%20muscle%2c%20donor1.CNhs13454.10282-104F3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10282-104F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleSoleusMuscleD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleSoleusMuscleDonor1_CNhs13454_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3\ urlLabel FANTOM5 Details:\ SkinAdultDonor1_CNhs11785_ctss_fwd SkinAdultD1+ bigWig skin, adult, donor1_CNhs11785_10074-102A2_forward 0 3563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skin%2c%20adult%2c%20donor1.CNhs11785.10074-102A2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel skin, adult, donor1_CNhs11785_10074-102A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10074-102A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinAdultDonor1_CNhs11785_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2\ urlLabel FANTOM5 Details:\ SkinAdultDonor1_CNhs11785_tpm_fwd SkinAdultD1+ bigWig skin, adult, donor1_CNhs11785_10074-102A2_forward 1 3563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skin%2c%20adult%2c%20donor1.CNhs11785.10074-102A2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel skin, adult, donor1_CNhs11785_10074-102A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10074-102A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinAdultDonor1_CNhs11785_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2\ urlLabel FANTOM5 Details:\ SkinAdultDonor1_CNhs11785_ctss_rev SkinAdultD1- bigWig skin, adult, donor1_CNhs11785_10074-102A2_reverse 0 3564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skin%2c%20adult%2c%20donor1.CNhs11785.10074-102A2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel skin, adult, donor1_CNhs11785_10074-102A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10074-102A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinAdultDonor1_CNhs11785_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2\ urlLabel FANTOM5 Details:\ SkinAdultDonor1_CNhs11785_tpm_rev SkinAdultD1- bigWig skin, adult, donor1_CNhs11785_10074-102A2_reverse 1 3564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skin%2c%20adult%2c%20donor1.CNhs11785.10074-102A2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel skin, adult, donor1_CNhs11785_10074-102A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10074-102A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinAdultDonor1_CNhs11785_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2\ urlLabel FANTOM5 Details:\ SkinFetalDonor1_CNhs11774_ctss_fwd SkinFetalD1+ bigWig skin, fetal, donor1_CNhs11774_10065-101I2_forward 0 3565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skin%2c%20fetal%2c%20donor1.CNhs11774.10065-101I2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel skin, fetal, donor1_CNhs11774_10065-101I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10065-101I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinFetalDonor1_CNhs11774_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2\ urlLabel FANTOM5 Details:\ SkinFetalDonor1_CNhs11774_tpm_fwd SkinFetalD1+ bigWig skin, fetal, donor1_CNhs11774_10065-101I2_forward 1 3565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skin%2c%20fetal%2c%20donor1.CNhs11774.10065-101I2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel skin, fetal, donor1_CNhs11774_10065-101I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10065-101I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinFetalDonor1_CNhs11774_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2\ urlLabel FANTOM5 Details:\ SkinFetalDonor1_CNhs11774_ctss_rev SkinFetalD1- bigWig skin, fetal, donor1_CNhs11774_10065-101I2_reverse 0 3566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skin%2c%20fetal%2c%20donor1.CNhs11774.10065-101I2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel skin, fetal, donor1_CNhs11774_10065-101I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10065-101I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinFetalDonor1_CNhs11774_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2\ urlLabel FANTOM5 Details:\ SkinFetalDonor1_CNhs11774_tpm_rev SkinFetalD1- bigWig skin, fetal, donor1_CNhs11774_10065-101I2_reverse 1 3566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/skin%2c%20fetal%2c%20donor1.CNhs11774.10065-101I2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel skin, fetal, donor1_CNhs11774_10065-101I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10065-101I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinFetalDonor1_CNhs11774_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2\ urlLabel FANTOM5 Details:\ SkinPalmDonor1_CNhs13458_ctss_fwd SkinPalmD1+ bigWig Skin - palm, donor1_CNhs13458_10286-104F7_forward 0 3567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Skin%20-%20palm%2c%20donor1.CNhs13458.10286-104F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Skin - palm, donor1_CNhs13458_10286-104F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10286-104F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinPalmD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinPalmDonor1_CNhs13458_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7\ urlLabel FANTOM5 Details:\ SkinPalmDonor1_CNhs13458_tpm_fwd SkinPalmD1+ bigWig Skin - palm, donor1_CNhs13458_10286-104F7_forward 1 3567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Skin%20-%20palm%2c%20donor1.CNhs13458.10286-104F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Skin - palm, donor1_CNhs13458_10286-104F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10286-104F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinPalmD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinPalmDonor1_CNhs13458_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7\ urlLabel FANTOM5 Details:\ SkinPalmDonor1_CNhs13458_ctss_rev SkinPalmD1- bigWig Skin - palm, donor1_CNhs13458_10286-104F7_reverse 0 3568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Skin%20-%20palm%2c%20donor1.CNhs13458.10286-104F7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Skin - palm, donor1_CNhs13458_10286-104F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10286-104F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinPalmD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinPalmDonor1_CNhs13458_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7\ urlLabel FANTOM5 Details:\ SkinPalmDonor1_CNhs13458_tpm_rev SkinPalmD1- bigWig Skin - palm, donor1_CNhs13458_10286-104F7_reverse 1 3568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Skin%20-%20palm%2c%20donor1.CNhs13458.10286-104F7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Skin - palm, donor1_CNhs13458_10286-104F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10286-104F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinPalmD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinPalmDonor1_CNhs13458_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7\ urlLabel FANTOM5 Details:\ SmallIntestineAdultPool1_CNhs10630_ctss_fwd SmallIntestineAdultPl1+ bigWig small intestine, adult, pool1_CNhs10630_10024-101D6_forward 0 3569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20intestine%2c%20adult%2c%20pool1.CNhs10630.10024-101D6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel small intestine, adult, pool1_CNhs10630_10024-101D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10024-101D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallIntestineAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmallIntestineAdultPool1_CNhs10630_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6\ urlLabel FANTOM5 Details:\ SmallIntestineAdultPool1_CNhs10630_tpm_fwd SmallIntestineAdultPl1+ bigWig small intestine, adult, pool1_CNhs10630_10024-101D6_forward 1 3569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20intestine%2c%20adult%2c%20pool1.CNhs10630.10024-101D6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel small intestine, adult, pool1_CNhs10630_10024-101D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10024-101D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallIntestineAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmallIntestineAdultPool1_CNhs10630_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6\ urlLabel FANTOM5 Details:\ SmallIntestineAdultPool1_CNhs10630_ctss_rev SmallIntestineAdultPl1- bigWig small intestine, adult, pool1_CNhs10630_10024-101D6_reverse 0 3570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20intestine%2c%20adult%2c%20pool1.CNhs10630.10024-101D6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel small intestine, adult, pool1_CNhs10630_10024-101D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10024-101D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallIntestineAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmallIntestineAdultPool1_CNhs10630_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6\ urlLabel FANTOM5 Details:\ SmallIntestineAdultPool1_CNhs10630_tpm_rev SmallIntestineAdultPl1- bigWig small intestine, adult, pool1_CNhs10630_10024-101D6_reverse 1 3570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20intestine%2c%20adult%2c%20pool1.CNhs10630.10024-101D6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel small intestine, adult, pool1_CNhs10630_10024-101D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10024-101D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallIntestineAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmallIntestineAdultPool1_CNhs10630_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6\ urlLabel FANTOM5 Details:\ SmallIntestineFetalDonor1_CNhs11773_ctss_fwd SmallIntestineFetalD1+ bigWig small intestine, fetal, donor1_CNhs11773_10064-101I1_forward 0 3571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20intestine%2c%20fetal%2c%20donor1.CNhs11773.10064-101I1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel small intestine, fetal, donor1_CNhs11773_10064-101I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10064-101I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallIntestineFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmallIntestineFetalDonor1_CNhs11773_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1\ urlLabel FANTOM5 Details:\ SmallIntestineFetalDonor1_CNhs11773_tpm_fwd SmallIntestineFetalD1+ bigWig small intestine, fetal, donor1_CNhs11773_10064-101I1_forward 1 3571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20intestine%2c%20fetal%2c%20donor1.CNhs11773.10064-101I1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel small intestine, fetal, donor1_CNhs11773_10064-101I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10064-101I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallIntestineFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmallIntestineFetalDonor1_CNhs11773_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1\ urlLabel FANTOM5 Details:\ SmallIntestineFetalDonor1_CNhs11773_ctss_rev SmallIntestineFetalD1- bigWig small intestine, fetal, donor1_CNhs11773_10064-101I1_reverse 0 3572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20intestine%2c%20fetal%2c%20donor1.CNhs11773.10064-101I1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel small intestine, fetal, donor1_CNhs11773_10064-101I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10064-101I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallIntestineFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmallIntestineFetalDonor1_CNhs11773_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1\ urlLabel FANTOM5 Details:\ SmallIntestineFetalDonor1_CNhs11773_tpm_rev SmallIntestineFetalD1- bigWig small intestine, fetal, donor1_CNhs11773_10064-101I1_reverse 1 3572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/small%20intestine%2c%20fetal%2c%20donor1.CNhs11773.10064-101I1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel small intestine, fetal, donor1_CNhs11773_10064-101I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10064-101I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallIntestineFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmallIntestineFetalDonor1_CNhs11773_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1\ urlLabel FANTOM5 Details:\ SmoothMuscleAdultPool1_CNhs11755_ctss_fwd SmoothMuscleAdultPl1+ bigWig smooth muscle, adult, pool1_CNhs11755_10048-101G3_forward 0 3573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/smooth%20muscle%2c%20adult%2c%20pool1.CNhs11755.10048-101G3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel smooth muscle, adult, pool1_CNhs11755_10048-101G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10048-101G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmoothMuscleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmoothMuscleAdultPool1_CNhs11755_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3\ urlLabel FANTOM5 Details:\ SmoothMuscleAdultPool1_CNhs11755_tpm_fwd SmoothMuscleAdultPl1+ bigWig smooth muscle, adult, pool1_CNhs11755_10048-101G3_forward 1 3573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/smooth%20muscle%2c%20adult%2c%20pool1.CNhs11755.10048-101G3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel smooth muscle, adult, pool1_CNhs11755_10048-101G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10048-101G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmoothMuscleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmoothMuscleAdultPool1_CNhs11755_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3\ urlLabel FANTOM5 Details:\ SmoothMuscleAdultPool1_CNhs11755_ctss_rev SmoothMuscleAdultPl1- bigWig smooth muscle, adult, pool1_CNhs11755_10048-101G3_reverse 0 3574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/smooth%20muscle%2c%20adult%2c%20pool1.CNhs11755.10048-101G3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel smooth muscle, adult, pool1_CNhs11755_10048-101G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10048-101G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmoothMuscleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmoothMuscleAdultPool1_CNhs11755_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3\ urlLabel FANTOM5 Details:\ SmoothMuscleAdultPool1_CNhs11755_tpm_rev SmoothMuscleAdultPl1- bigWig smooth muscle, adult, pool1_CNhs11755_10048-101G3_reverse 1 3574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/smooth%20muscle%2c%20adult%2c%20pool1.CNhs11755.10048-101G3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel smooth muscle, adult, pool1_CNhs11755_10048-101G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10048-101G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmoothMuscleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmoothMuscleAdultPool1_CNhs11755_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10196_CNhs13807_ctss_fwd SpinalCordAdultD10196+ bigWig spinal cord - adult, donor10196_CNhs13807_10181-103D1_forward 0 3575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%20-%20adult%2c%20donor10196.CNhs13807.10181-103D1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel spinal cord - adult, donor10196_CNhs13807_10181-103D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10181-103D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10196_CNhs13807_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10196_CNhs13807_tpm_fwd SpinalCordAdultD10196+ bigWig spinal cord - adult, donor10196_CNhs13807_10181-103D1_forward 1 3575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%20-%20adult%2c%20donor10196.CNhs13807.10181-103D1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel spinal cord - adult, donor10196_CNhs13807_10181-103D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10181-103D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10196_CNhs13807_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10196_CNhs13807_ctss_rev SpinalCordAdultD10196- bigWig spinal cord - adult, donor10196_CNhs13807_10181-103D1_reverse 0 3576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%20-%20adult%2c%20donor10196.CNhs13807.10181-103D1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel spinal cord - adult, donor10196_CNhs13807_10181-103D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10181-103D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10196_CNhs13807_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10196_CNhs13807_tpm_rev SpinalCordAdultD10196- bigWig spinal cord - adult, donor10196_CNhs13807_10181-103D1_reverse 1 3576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%20-%20adult%2c%20donor10196.CNhs13807.10181-103D1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel spinal cord - adult, donor10196_CNhs13807_10181-103D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10181-103D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10196_CNhs13807_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10252_CNhs12227_ctss_fwd SpinalCordAdultD10252+ bigWig spinal cord, adult, donor10252_CNhs12227_10159-103A6_forward 0 3577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%2c%20adult%2c%20donor10252.CNhs12227.10159-103A6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel spinal cord, adult, donor10252_CNhs12227_10159-103A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10159-103A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10252_CNhs12227_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10252_CNhs12227_tpm_fwd SpinalCordAdultD10252+ bigWig spinal cord, adult, donor10252_CNhs12227_10159-103A6_forward 1 3577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%2c%20adult%2c%20donor10252.CNhs12227.10159-103A6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel spinal cord, adult, donor10252_CNhs12227_10159-103A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10159-103A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10252_CNhs12227_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10252_CNhs12227_ctss_rev SpinalCordAdultD10252- bigWig spinal cord, adult, donor10252_CNhs12227_10159-103A6_reverse 0 3578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%2c%20adult%2c%20donor10252.CNhs12227.10159-103A6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel spinal cord, adult, donor10252_CNhs12227_10159-103A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10159-103A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10252_CNhs12227_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10252_CNhs12227_tpm_rev SpinalCordAdultD10252- bigWig spinal cord, adult, donor10252_CNhs12227_10159-103A6_reverse 1 3578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%2c%20adult%2c%20donor10252.CNhs12227.10159-103A6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel spinal cord, adult, donor10252_CNhs12227_10159-103A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10159-103A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10252_CNhs12227_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10258_CNhs14222_ctss_fwd SpinalCordAdultD10258+ bigWig spinal cord, adult, donor10258_CNhs14222_10369-105F9_forward 0 3579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%2c%20adult%2c%20donor10258.CNhs14222.10369-105F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel spinal cord, adult, donor10258_CNhs14222_10369-105F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10369-105F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10258_CNhs14222_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10258_CNhs14222_tpm_fwd SpinalCordAdultD10258+ bigWig spinal cord, adult, donor10258_CNhs14222_10369-105F9_forward 1 3579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%2c%20adult%2c%20donor10258.CNhs14222.10369-105F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel spinal cord, adult, donor10258_CNhs14222_10369-105F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10369-105F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10258_CNhs14222_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10258_CNhs14222_ctss_rev SpinalCordAdultD10258- bigWig spinal cord, adult, donor10258_CNhs14222_10369-105F9_reverse 0 3580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%2c%20adult%2c%20donor10258.CNhs14222.10369-105F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel spinal cord, adult, donor10258_CNhs14222_10369-105F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10369-105F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10258_CNhs14222_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10258_CNhs14222_tpm_rev SpinalCordAdultD10258- bigWig spinal cord, adult, donor10258_CNhs14222_10369-105F9_reverse 1 3580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%2c%20adult%2c%20donor10258.CNhs14222.10369-105F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel spinal cord, adult, donor10258_CNhs14222_10369-105F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10369-105F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10258_CNhs14222_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9\ urlLabel FANTOM5 Details:\ SpinalCordFetalDonor1_CNhs11764_ctss_fwd SpinalCordFetalD1+ bigWig spinal cord, fetal, donor1_CNhs11764_10056-101H2_forward 0 3581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%2c%20fetal%2c%20donor1.CNhs11764.10056-101H2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel spinal cord, fetal, donor1_CNhs11764_10056-101H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10056-101H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordFetalDonor1_CNhs11764_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2\ urlLabel FANTOM5 Details:\ SpinalCordFetalDonor1_CNhs11764_tpm_fwd SpinalCordFetalD1+ bigWig spinal cord, fetal, donor1_CNhs11764_10056-101H2_forward 1 3581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%2c%20fetal%2c%20donor1.CNhs11764.10056-101H2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel spinal cord, fetal, donor1_CNhs11764_10056-101H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10056-101H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordFetalDonor1_CNhs11764_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2\ urlLabel FANTOM5 Details:\ SpinalCordFetalDonor1_CNhs11764_ctss_rev SpinalCordFetalD1- bigWig spinal cord, fetal, donor1_CNhs11764_10056-101H2_reverse 0 3582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%2c%20fetal%2c%20donor1.CNhs11764.10056-101H2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel spinal cord, fetal, donor1_CNhs11764_10056-101H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10056-101H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordFetalDonor1_CNhs11764_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2\ urlLabel FANTOM5 Details:\ SpinalCordFetalDonor1_CNhs11764_tpm_rev SpinalCordFetalD1- bigWig spinal cord, fetal, donor1_CNhs11764_10056-101H2_reverse 1 3582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%2c%20fetal%2c%20donor1.CNhs11764.10056-101H2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel spinal cord, fetal, donor1_CNhs11764_10056-101H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10056-101H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordFetalDonor1_CNhs11764_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2\ urlLabel FANTOM5 Details:\ SpinalCordNewbornDonor10223_CNhs14077_ctss_fwd SpinalCordNbD10223+ bigWig spinal cord, newborn, donor10223_CNhs14077_10359-105E8_forward 0 3583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%2c%20newborn%2c%20donor10223.CNhs14077.10359-105E8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel spinal cord, newborn, donor10223_CNhs14077_10359-105E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10359-105E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordNewbornDonor10223_CNhs14077_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8\ urlLabel FANTOM5 Details:\ SpinalCordNewbornDonor10223_CNhs14077_tpm_fwd SpinalCordNbD10223+ bigWig spinal cord, newborn, donor10223_CNhs14077_10359-105E8_forward 1 3583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%2c%20newborn%2c%20donor10223.CNhs14077.10359-105E8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel spinal cord, newborn, donor10223_CNhs14077_10359-105E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10359-105E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordNewbornDonor10223_CNhs14077_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8\ urlLabel FANTOM5 Details:\ SpinalCordNewbornDonor10223_CNhs14077_ctss_rev SpinalCordNbD10223- bigWig spinal cord, newborn, donor10223_CNhs14077_10359-105E8_reverse 0 3584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%2c%20newborn%2c%20donor10223.CNhs14077.10359-105E8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel spinal cord, newborn, donor10223_CNhs14077_10359-105E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10359-105E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordNewbornDonor10223_CNhs14077_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8\ urlLabel FANTOM5 Details:\ SpinalCordNewbornDonor10223_CNhs14077_tpm_rev SpinalCordNbD10223- bigWig spinal cord, newborn, donor10223_CNhs14077_10359-105E8_reverse 1 3584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spinal%20cord%2c%20newborn%2c%20donor10223.CNhs14077.10359-105E8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel spinal cord, newborn, donor10223_CNhs14077_10359-105E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10359-105E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordNewbornDonor10223_CNhs14077_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8\ urlLabel FANTOM5 Details:\ SpleenAdultPool1_CNhs10631_ctss_fwd SpleenAdultPl1+ bigWig spleen, adult, pool1_CNhs10631_10025-101D7_forward 0 3585 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spleen%2c%20adult%2c%20pool1.CNhs10631.10025-101D7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel spleen, adult, pool1_CNhs10631_10025-101D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10025-101D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpleenAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpleenAdultPool1_CNhs10631_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7\ urlLabel FANTOM5 Details:\ SpleenAdultPool1_CNhs10631_tpm_fwd SpleenAdultPl1+ bigWig spleen, adult, pool1_CNhs10631_10025-101D7_forward 1 3585 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spleen%2c%20adult%2c%20pool1.CNhs10631.10025-101D7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel spleen, adult, pool1_CNhs10631_10025-101D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10025-101D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpleenAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpleenAdultPool1_CNhs10631_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7\ urlLabel FANTOM5 Details:\ SpleenAdultPool1_CNhs10631_ctss_rev SpleenAdultPl1- bigWig spleen, adult, pool1_CNhs10631_10025-101D7_reverse 0 3586 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spleen%2c%20adult%2c%20pool1.CNhs10631.10025-101D7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel spleen, adult, pool1_CNhs10631_10025-101D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10025-101D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpleenAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpleenAdultPool1_CNhs10631_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7\ urlLabel FANTOM5 Details:\ SpleenAdultPool1_CNhs10631_tpm_rev SpleenAdultPl1- bigWig spleen, adult, pool1_CNhs10631_10025-101D7_reverse 1 3586 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spleen%2c%20adult%2c%20pool1.CNhs10631.10025-101D7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel spleen, adult, pool1_CNhs10631_10025-101D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10025-101D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpleenAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpleenAdultPool1_CNhs10631_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7\ urlLabel FANTOM5 Details:\ SpleenFetalPool1_CNhs10651_ctss_fwd SpleenFetalPl1+ bigWig spleen, fetal, pool1_CNhs10651_10044-101F8_forward 0 3587 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spleen%2c%20fetal%2c%20pool1.CNhs10651.10044-101F8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel spleen, fetal, pool1_CNhs10651_10044-101F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10044-101F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpleenFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpleenFetalPool1_CNhs10651_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8\ urlLabel FANTOM5 Details:\ SpleenFetalPool1_CNhs10651_tpm_fwd SpleenFetalPl1+ bigWig spleen, fetal, pool1_CNhs10651_10044-101F8_forward 1 3587 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spleen%2c%20fetal%2c%20pool1.CNhs10651.10044-101F8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel spleen, fetal, pool1_CNhs10651_10044-101F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10044-101F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpleenFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpleenFetalPool1_CNhs10651_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8\ urlLabel FANTOM5 Details:\ SpleenFetalPool1_CNhs10651_ctss_rev SpleenFetalPl1- bigWig spleen, fetal, pool1_CNhs10651_10044-101F8_reverse 0 3588 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spleen%2c%20fetal%2c%20pool1.CNhs10651.10044-101F8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel spleen, fetal, pool1_CNhs10651_10044-101F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10044-101F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpleenFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpleenFetalPool1_CNhs10651_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8\ urlLabel FANTOM5 Details:\ SpleenFetalPool1_CNhs10651_tpm_rev SpleenFetalPl1- bigWig spleen, fetal, pool1_CNhs10651_10044-101F8_reverse 1 3588 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/spleen%2c%20fetal%2c%20pool1.CNhs10651.10044-101F8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel spleen, fetal, pool1_CNhs10651_10044-101F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10044-101F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpleenFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpleenFetalPool1_CNhs10651_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8\ urlLabel FANTOM5 Details:\ StomachFetalDonor1_CNhs11771_ctss_fwd StomachFetalD1+ bigWig stomach, fetal, donor1_CNhs11771_10062-101H8_forward 0 3589 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/stomach%2c%20fetal%2c%20donor1.CNhs11771.10062-101H8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel stomach, fetal, donor1_CNhs11771_10062-101H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10062-101H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel StomachFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track StomachFetalDonor1_CNhs11771_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8\ urlLabel FANTOM5 Details:\ StomachFetalDonor1_CNhs11771_tpm_fwd StomachFetalD1+ bigWig stomach, fetal, donor1_CNhs11771_10062-101H8_forward 1 3589 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/stomach%2c%20fetal%2c%20donor1.CNhs11771.10062-101H8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel stomach, fetal, donor1_CNhs11771_10062-101H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10062-101H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel StomachFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track StomachFetalDonor1_CNhs11771_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8\ urlLabel FANTOM5 Details:\ StomachFetalDonor1_CNhs11771_ctss_rev StomachFetalD1- bigWig stomach, fetal, donor1_CNhs11771_10062-101H8_reverse 0 3590 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/stomach%2c%20fetal%2c%20donor1.CNhs11771.10062-101H8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel stomach, fetal, donor1_CNhs11771_10062-101H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10062-101H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel StomachFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track StomachFetalDonor1_CNhs11771_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8\ urlLabel FANTOM5 Details:\ StomachFetalDonor1_CNhs11771_tpm_rev StomachFetalD1- bigWig stomach, fetal, donor1_CNhs11771_10062-101H8_reverse 1 3590 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/stomach%2c%20fetal%2c%20donor1.CNhs11771.10062-101H8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel stomach, fetal, donor1_CNhs11771_10062-101H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10062-101H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel StomachFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track StomachFetalDonor1_CNhs11771_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8\ urlLabel FANTOM5 Details:\ SubmaxillaryGlandAdult_CNhs12852_ctss_fwd SubmaxillaryGlandAdult+ bigWig submaxillary gland, adult_CNhs12852_10202-103F4_forward 0 3591 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/submaxillary%20gland%2c%20adult.CNhs12852.10202-103F4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel submaxillary gland, adult_CNhs12852_10202-103F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10202-103F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubmaxillaryGlandAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubmaxillaryGlandAdult_CNhs12852_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4\ urlLabel FANTOM5 Details:\ SubmaxillaryGlandAdult_CNhs12852_tpm_fwd SubmaxillaryGlandAdult+ bigWig submaxillary gland, adult_CNhs12852_10202-103F4_forward 1 3591 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/submaxillary%20gland%2c%20adult.CNhs12852.10202-103F4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel submaxillary gland, adult_CNhs12852_10202-103F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10202-103F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubmaxillaryGlandAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubmaxillaryGlandAdult_CNhs12852_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4\ urlLabel FANTOM5 Details:\ SubmaxillaryGlandAdult_CNhs12852_ctss_rev SubmaxillaryGlandAdult- bigWig submaxillary gland, adult_CNhs12852_10202-103F4_reverse 0 3592 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/submaxillary%20gland%2c%20adult.CNhs12852.10202-103F4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel submaxillary gland, adult_CNhs12852_10202-103F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10202-103F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubmaxillaryGlandAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubmaxillaryGlandAdult_CNhs12852_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4\ urlLabel FANTOM5 Details:\ SubmaxillaryGlandAdult_CNhs12852_tpm_rev SubmaxillaryGlandAdult- bigWig submaxillary gland, adult_CNhs12852_10202-103F4_reverse 1 3592 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/submaxillary%20gland%2c%20adult.CNhs12852.10202-103F4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel submaxillary gland, adult_CNhs12852_10202-103F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10202-103F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubmaxillaryGlandAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubmaxillaryGlandAdult_CNhs12852_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10196_CNhs13803_ctss_fwd SubstantiaNigraAdultD10196+ bigWig substantia nigra - adult, donor10196_CNhs13803_10178-103C7_forward 0 3593 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/substantia%20nigra%20-%20adult%2c%20donor10196.CNhs13803.10178-103C7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel substantia nigra - adult, donor10196_CNhs13803_10178-103C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10178-103C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraAdultDonor10196_CNhs13803_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10196_CNhs13803_tpm_fwd SubstantiaNigraAdultD10196+ bigWig substantia nigra - adult, donor10196_CNhs13803_10178-103C7_forward 1 3593 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/substantia%20nigra%20-%20adult%2c%20donor10196.CNhs13803.10178-103C7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel substantia nigra - adult, donor10196_CNhs13803_10178-103C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10178-103C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraAdultDonor10196_CNhs13803_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10196_CNhs13803_ctss_rev SubstantiaNigraAdultD10196- bigWig substantia nigra - adult, donor10196_CNhs13803_10178-103C7_reverse 0 3594 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/substantia%20nigra%20-%20adult%2c%20donor10196.CNhs13803.10178-103C7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel substantia nigra - adult, donor10196_CNhs13803_10178-103C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10178-103C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraAdultDonor10196_CNhs13803_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10196_CNhs13803_tpm_rev SubstantiaNigraAdultD10196- bigWig substantia nigra - adult, donor10196_CNhs13803_10178-103C7_reverse 1 3594 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/substantia%20nigra%20-%20adult%2c%20donor10196.CNhs13803.10178-103C7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel substantia nigra - adult, donor10196_CNhs13803_10178-103C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10178-103C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraAdultDonor10196_CNhs13803_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10252_CNhs12318_ctss_fwd SubstantiaNigraAdultD10252+ bigWig substantia nigra, adult, donor10252_CNhs12318_10158-103A5_forward 0 3595 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/substantia%20nigra%2c%20adult%2c%20donor10252.CNhs12318.10158-103A5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel substantia nigra, adult, donor10252_CNhs12318_10158-103A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10158-103A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraAdultDonor10252_CNhs12318_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10252_CNhs12318_tpm_fwd SubstantiaNigraAdultD10252+ bigWig substantia nigra, adult, donor10252_CNhs12318_10158-103A5_forward 1 3595 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/substantia%20nigra%2c%20adult%2c%20donor10252.CNhs12318.10158-103A5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel substantia nigra, adult, donor10252_CNhs12318_10158-103A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10158-103A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraAdultDonor10252_CNhs12318_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10252_CNhs12318_ctss_rev SubstantiaNigraAdultD10252- bigWig substantia nigra, adult, donor10252_CNhs12318_10158-103A5_reverse 0 3596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/substantia%20nigra%2c%20adult%2c%20donor10252.CNhs12318.10158-103A5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel substantia nigra, adult, donor10252_CNhs12318_10158-103A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10158-103A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraAdultDonor10252_CNhs12318_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10252_CNhs12318_tpm_rev SubstantiaNigraAdultD10252- bigWig substantia nigra, adult, donor10252_CNhs12318_10158-103A5_reverse 1 3596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/substantia%20nigra%2c%20adult%2c%20donor10252.CNhs12318.10158-103A5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel substantia nigra, adult, donor10252_CNhs12318_10158-103A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10158-103A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraAdultDonor10252_CNhs12318_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10258_CNhs14224_ctss_fwd SubstantiaNigraAdultD10258+ bigWig substantia nigra, adult, donor10258_CNhs14224_10371-105G2_forward 0 3597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/substantia%20nigra%2c%20adult%2c%20donor10258.CNhs14224.10371-105G2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel substantia nigra, adult, donor10258_CNhs14224_10371-105G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10371-105G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraAdultDonor10258_CNhs14224_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10258_CNhs14224_tpm_fwd SubstantiaNigraAdultD10258+ bigWig substantia nigra, adult, donor10258_CNhs14224_10371-105G2_forward 1 3597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/substantia%20nigra%2c%20adult%2c%20donor10258.CNhs14224.10371-105G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel substantia nigra, adult, donor10258_CNhs14224_10371-105G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10371-105G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraAdultDonor10258_CNhs14224_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10258_CNhs14224_ctss_rev SubstantiaNigraAdultD10258- bigWig substantia nigra, adult, donor10258_CNhs14224_10371-105G2_reverse 0 3598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/substantia%20nigra%2c%20adult%2c%20donor10258.CNhs14224.10371-105G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel substantia nigra, adult, donor10258_CNhs14224_10371-105G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10371-105G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraAdultDonor10258_CNhs14224_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10258_CNhs14224_tpm_rev SubstantiaNigraAdultD10258- bigWig substantia nigra, adult, donor10258_CNhs14224_10371-105G2_reverse 1 3598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/substantia%20nigra%2c%20adult%2c%20donor10258.CNhs14224.10371-105G2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel substantia nigra, adult, donor10258_CNhs14224_10371-105G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10371-105G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraAdultDonor10258_CNhs14224_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2\ urlLabel FANTOM5 Details:\ SubstantiaNigraNewbornDonor10223_CNhs14076_ctss_fwd SubstantiaNigraNbD10223+ bigWig substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_forward 0 3599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/substantia%20nigra%2c%20newborn%2c%20donor10223.CNhs14076.10358-105E7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10358-105E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraNewbornDonor10223_CNhs14076_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7\ urlLabel FANTOM5 Details:\ SubstantiaNigraNewbornDonor10223_CNhs14076_tpm_fwd SubstantiaNigraNbD10223+ bigWig substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_forward 1 3599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/substantia%20nigra%2c%20newborn%2c%20donor10223.CNhs14076.10358-105E7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10358-105E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraNewbornDonor10223_CNhs14076_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7\ urlLabel FANTOM5 Details:\ SubstantiaNigraNewbornDonor10223_CNhs14076_ctss_rev SubstantiaNigraNbD10223- bigWig substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_reverse 0 3600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/substantia%20nigra%2c%20newborn%2c%20donor10223.CNhs14076.10358-105E7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10358-105E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraNewbornDonor10223_CNhs14076_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7\ urlLabel FANTOM5 Details:\ SubstantiaNigraNewbornDonor10223_CNhs14076_tpm_rev SubstantiaNigraNbD10223- bigWig substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_reverse 1 3600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/substantia%20nigra%2c%20newborn%2c%20donor10223.CNhs14076.10358-105E7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10358-105E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraNewbornDonor10223_CNhs14076_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7\ urlLabel FANTOM5 Details:\ TemporalLobeAdultPool1_CNhs10637_ctss_fwd TemporalLobeAdultPl1+ bigWig temporal lobe, adult, pool1_CNhs10637_10031-101E4_forward 0 3601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/temporal%20lobe%2c%20adult%2c%20pool1.CNhs10637.10031-101E4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel temporal lobe, adult, pool1_CNhs10637_10031-101E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10031-101E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeAdultPool1_CNhs10637_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4\ urlLabel FANTOM5 Details:\ TemporalLobeAdultPool1_CNhs10637_tpm_fwd TemporalLobeAdultPl1+ bigWig temporal lobe, adult, pool1_CNhs10637_10031-101E4_forward 1 3601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/temporal%20lobe%2c%20adult%2c%20pool1.CNhs10637.10031-101E4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel temporal lobe, adult, pool1_CNhs10637_10031-101E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10031-101E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeAdultPool1_CNhs10637_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4\ urlLabel FANTOM5 Details:\ TemporalLobeAdultPool1_CNhs10637_ctss_rev TemporalLobeAdultPl1- bigWig temporal lobe, adult, pool1_CNhs10637_10031-101E4_reverse 0 3602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/temporal%20lobe%2c%20adult%2c%20pool1.CNhs10637.10031-101E4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel temporal lobe, adult, pool1_CNhs10637_10031-101E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10031-101E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeAdultPool1_CNhs10637_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4\ urlLabel FANTOM5 Details:\ TemporalLobeAdultPool1_CNhs10637_tpm_rev TemporalLobeAdultPl1- bigWig temporal lobe, adult, pool1_CNhs10637_10031-101E4_reverse 1 3602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/temporal%20lobe%2c%20adult%2c%20pool1.CNhs10637.10031-101E4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel temporal lobe, adult, pool1_CNhs10637_10031-101E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10031-101E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeAdultPool1_CNhs10637_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep1_CNhs11772_ctss_fwd TemporalLobeFetalD1Tr1+ bigWig temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_forward 0 3603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11772.10063-101H9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeFetalD1Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeFetalDonor1TechRep1_CNhs11772_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep1_CNhs11772_tpm_fwd TemporalLobeFetalD1Tr1+ bigWig temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_forward 1 3603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11772.10063-101H9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeFetalD1Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeFetalDonor1TechRep1_CNhs11772_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep1_CNhs11772_ctss_rev TemporalLobeFetalD1Tr1- bigWig temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_reverse 0 3604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11772.10063-101H9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeFetalD1Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeFetalDonor1TechRep1_CNhs11772_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep1_CNhs11772_tpm_rev TemporalLobeFetalD1Tr1- bigWig temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_reverse 1 3604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11772.10063-101H9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeFetalD1Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeFetalDonor1TechRep1_CNhs11772_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep2_CNhs12996_ctss_fwd TemporalLobeFetalD1Tr2+ bigWig temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_forward 0 3605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12996.10063-101H9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeFetalD1Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeFetalDonor1TechRep2_CNhs12996_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep2_CNhs12996_tpm_fwd TemporalLobeFetalD1Tr2+ bigWig temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_forward 1 3605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12996.10063-101H9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeFetalD1Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeFetalDonor1TechRep2_CNhs12996_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep2_CNhs12996_ctss_rev TemporalLobeFetalD1Tr2- bigWig temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_reverse 0 3606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12996.10063-101H9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeFetalD1Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeFetalDonor1TechRep2_CNhs12996_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep2_CNhs12996_tpm_rev TemporalLobeFetalD1Tr2- bigWig temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_reverse 1 3606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12996.10063-101H9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeFetalD1Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeFetalDonor1TechRep2_CNhs12996_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TestisAdultPool1_CNhs10632_ctss_fwd TestisAdultPl1+ bigWig testis, adult, pool1_CNhs10632_10026-101D8_forward 0 3607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/testis%2c%20adult%2c%20pool1.CNhs10632.10026-101D8.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel testis, adult, pool1_CNhs10632_10026-101D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10026-101D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TestisAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TestisAdultPool1_CNhs10632_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8\ urlLabel FANTOM5 Details:\ TestisAdultPool1_CNhs10632_tpm_fwd TestisAdultPl1+ bigWig testis, adult, pool1_CNhs10632_10026-101D8_forward 1 3607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/testis%2c%20adult%2c%20pool1.CNhs10632.10026-101D8.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel testis, adult, pool1_CNhs10632_10026-101D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10026-101D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TestisAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TestisAdultPool1_CNhs10632_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8\ urlLabel FANTOM5 Details:\ TestisAdultPool1_CNhs10632_ctss_rev TestisAdultPl1- bigWig testis, adult, pool1_CNhs10632_10026-101D8_reverse 0 3608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/testis%2c%20adult%2c%20pool1.CNhs10632.10026-101D8.hg19.ctss.rev.bw\ color 0,0,255\ longLabel testis, adult, pool1_CNhs10632_10026-101D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10026-101D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TestisAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TestisAdultPool1_CNhs10632_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8\ urlLabel FANTOM5 Details:\ TestisAdultPool1_CNhs10632_tpm_rev TestisAdultPl1- bigWig testis, adult, pool1_CNhs10632_10026-101D8_reverse 1 3608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8 regulation 0 bigDataUrl /gbdb/hg19/fantom5/testis%2c%20adult%2c%20pool1.CNhs10632.10026-101D8.hg19.tpm.rev.bw\ color 0,0,255\ longLabel testis, adult, pool1_CNhs10632_10026-101D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10026-101D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TestisAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TestisAdultPool1_CNhs10632_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8\ urlLabel FANTOM5 Details:\ TestisAdultPool2_CNhs12998_ctss_fwd TestisAdultPl2+ bigWig testis, adult, pool2_CNhs12998_10096-102C6_forward 0 3609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/testis%2c%20adult%2c%20pool2.CNhs12998.10096-102C6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel testis, adult, pool2_CNhs12998_10096-102C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10096-102C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TestisAdultPl2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TestisAdultPool2_CNhs12998_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6\ urlLabel FANTOM5 Details:\ TestisAdultPool2_CNhs12998_tpm_fwd TestisAdultPl2+ bigWig testis, adult, pool2_CNhs12998_10096-102C6_forward 1 3609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/testis%2c%20adult%2c%20pool2.CNhs12998.10096-102C6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel testis, adult, pool2_CNhs12998_10096-102C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10096-102C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TestisAdultPl2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TestisAdultPool2_CNhs12998_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6\ urlLabel FANTOM5 Details:\ TestisAdultPool2_CNhs12998_ctss_rev TestisAdultPl2- bigWig testis, adult, pool2_CNhs12998_10096-102C6_reverse 0 3610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/testis%2c%20adult%2c%20pool2.CNhs12998.10096-102C6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel testis, adult, pool2_CNhs12998_10096-102C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10096-102C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TestisAdultPl2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TestisAdultPool2_CNhs12998_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6\ urlLabel FANTOM5 Details:\ TestisAdultPool2_CNhs12998_tpm_rev TestisAdultPl2- bigWig testis, adult, pool2_CNhs12998_10096-102C6_reverse 1 3610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/testis%2c%20adult%2c%20pool2.CNhs12998.10096-102C6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel testis, adult, pool2_CNhs12998_10096-102C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10096-102C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TestisAdultPl2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TestisAdultPool2_CNhs12998_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10196_CNhs13794_ctss_fwd ThalamusAdultD10196+ bigWig thalamus - adult, donor10196_CNhs13794_10168-103B6_forward 0 3611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%20-%20adult%2c%20donor10196.CNhs13794.10168-103B6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel thalamus - adult, donor10196_CNhs13794_10168-103B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10168-103B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10196_CNhs13794_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10196_CNhs13794_tpm_fwd ThalamusAdultD10196+ bigWig thalamus - adult, donor10196_CNhs13794_10168-103B6_forward 1 3611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%20-%20adult%2c%20donor10196.CNhs13794.10168-103B6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel thalamus - adult, donor10196_CNhs13794_10168-103B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10168-103B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10196_CNhs13794_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10196_CNhs13794_ctss_rev ThalamusAdultD10196- bigWig thalamus - adult, donor10196_CNhs13794_10168-103B6_reverse 0 3612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%20-%20adult%2c%20donor10196.CNhs13794.10168-103B6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel thalamus - adult, donor10196_CNhs13794_10168-103B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10168-103B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10196_CNhs13794_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10196_CNhs13794_tpm_rev ThalamusAdultD10196- bigWig thalamus - adult, donor10196_CNhs13794_10168-103B6_reverse 1 3612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%20-%20adult%2c%20donor10196.CNhs13794.10168-103B6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel thalamus - adult, donor10196_CNhs13794_10168-103B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10168-103B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10196_CNhs13794_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10252_CNhs12314_ctss_fwd ThalamusAdultD10252+ bigWig thalamus, adult, donor10252_CNhs12314_10154-103A1_forward 0 3613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%2c%20adult%2c%20donor10252.CNhs12314.10154-103A1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10252_CNhs12314_10154-103A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10154-103A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10252_CNhs12314_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10252_CNhs12314_tpm_fwd ThalamusAdultD10252+ bigWig thalamus, adult, donor10252_CNhs12314_10154-103A1_forward 1 3613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%2c%20adult%2c%20donor10252.CNhs12314.10154-103A1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10252_CNhs12314_10154-103A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10154-103A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10252_CNhs12314_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10252_CNhs12314_ctss_rev ThalamusAdultD10252- bigWig thalamus, adult, donor10252_CNhs12314_10154-103A1_reverse 0 3614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%2c%20adult%2c%20donor10252.CNhs12314.10154-103A1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10252_CNhs12314_10154-103A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10154-103A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10252_CNhs12314_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10252_CNhs12314_tpm_rev ThalamusAdultD10252- bigWig thalamus, adult, donor10252_CNhs12314_10154-103A1_reverse 1 3614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%2c%20adult%2c%20donor10252.CNhs12314.10154-103A1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10252_CNhs12314_10154-103A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10154-103A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10252_CNhs12314_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep1_CNhs14223_ctss_fwd ThalamusAdultD10258Tr1+ bigWig thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_forward 0 3615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14223.10370-105G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10258TechRep1_CNhs14223_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep1_CNhs14223_tpm_fwd ThalamusAdultD10258Tr1+ bigWig thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_forward 1 3615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14223.10370-105G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10258TechRep1_CNhs14223_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep1_CNhs14223_ctss_rev ThalamusAdultD10258Tr1- bigWig thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_reverse 0 3616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14223.10370-105G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10258TechRep1_CNhs14223_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep1_CNhs14223_tpm_rev ThalamusAdultD10258Tr1- bigWig thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_reverse 1 3616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14223.10370-105G1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10258TechRep1_CNhs14223_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep2_CNhs14551_ctss_fwd ThalamusAdultD10258Tr2+ bigWig thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_forward 0 3617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14551.10370-105G1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10258TechRep2_CNhs14551_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep2_CNhs14551_tpm_fwd ThalamusAdultD10258Tr2+ bigWig thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_forward 1 3617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14551.10370-105G1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10258TechRep2_CNhs14551_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep2_CNhs14551_ctss_rev ThalamusAdultD10258Tr2- bigWig thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_reverse 0 3618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14551.10370-105G1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10258TechRep2_CNhs14551_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep2_CNhs14551_tpm_rev ThalamusAdultD10258Tr2- bigWig thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_reverse 1 3618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14551.10370-105G1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10258TechRep2_CNhs14551_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusNewbornDonor10223_CNhs14084_ctss_fwd ThalamusNbD10223+ bigWig thalamus, newborn, donor10223_CNhs14084_10366-105F6_forward 0 3619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%2c%20newborn%2c%20donor10223.CNhs14084.10366-105F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel thalamus, newborn, donor10223_CNhs14084_10366-105F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10366-105F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusNewbornDonor10223_CNhs14084_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6\ urlLabel FANTOM5 Details:\ ThalamusNewbornDonor10223_CNhs14084_tpm_fwd ThalamusNbD10223+ bigWig thalamus, newborn, donor10223_CNhs14084_10366-105F6_forward 1 3619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%2c%20newborn%2c%20donor10223.CNhs14084.10366-105F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel thalamus, newborn, donor10223_CNhs14084_10366-105F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10366-105F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusNewbornDonor10223_CNhs14084_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6\ urlLabel FANTOM5 Details:\ ThalamusNewbornDonor10223_CNhs14084_ctss_rev ThalamusNbD10223- bigWig thalamus, newborn, donor10223_CNhs14084_10366-105F6_reverse 0 3620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%2c%20newborn%2c%20donor10223.CNhs14084.10366-105F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel thalamus, newborn, donor10223_CNhs14084_10366-105F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10366-105F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusNewbornDonor10223_CNhs14084_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6\ urlLabel FANTOM5 Details:\ ThalamusNewbornDonor10223_CNhs14084_tpm_rev ThalamusNbD10223- bigWig thalamus, newborn, donor10223_CNhs14084_10366-105F6_reverse 1 3620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thalamus%2c%20newborn%2c%20donor10223.CNhs14084.10366-105F6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel thalamus, newborn, donor10223_CNhs14084_10366-105F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10366-105F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusNewbornDonor10223_CNhs14084_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6\ urlLabel FANTOM5 Details:\ ThroatAdult_CNhs12858_ctss_fwd ThroatAdult+ bigWig throat, adult_CNhs12858_10209-103G2_forward 0 3621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/throat%2c%20adult.CNhs12858.10209-103G2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel throat, adult_CNhs12858_10209-103G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10209-103G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThroatAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThroatAdult_CNhs12858_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2\ urlLabel FANTOM5 Details:\ ThroatAdult_CNhs12858_tpm_fwd ThroatAdult+ bigWig throat, adult_CNhs12858_10209-103G2_forward 1 3621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/throat%2c%20adult.CNhs12858.10209-103G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel throat, adult_CNhs12858_10209-103G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10209-103G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThroatAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThroatAdult_CNhs12858_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2\ urlLabel FANTOM5 Details:\ ThroatAdult_CNhs12858_ctss_rev ThroatAdult- bigWig throat, adult_CNhs12858_10209-103G2_reverse 0 3622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/throat%2c%20adult.CNhs12858.10209-103G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel throat, adult_CNhs12858_10209-103G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10209-103G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThroatAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThroatAdult_CNhs12858_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2\ urlLabel FANTOM5 Details:\ ThroatAdult_CNhs12858_tpm_rev ThroatAdult- bigWig throat, adult_CNhs12858_10209-103G2_reverse 1 3622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/throat%2c%20adult.CNhs12858.10209-103G2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel throat, adult_CNhs12858_10209-103G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10209-103G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThroatAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThroatAdult_CNhs12858_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2\ urlLabel FANTOM5 Details:\ ThroatFetalDonor1_CNhs11770_ctss_fwd ThroatFetalD1+ bigWig throat, fetal, donor1_CNhs11770_10061-101H7_forward 0 3623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/throat%2c%20fetal%2c%20donor1.CNhs11770.10061-101H7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel throat, fetal, donor1_CNhs11770_10061-101H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10061-101H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThroatFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThroatFetalDonor1_CNhs11770_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7\ urlLabel FANTOM5 Details:\ ThroatFetalDonor1_CNhs11770_tpm_fwd ThroatFetalD1+ bigWig throat, fetal, donor1_CNhs11770_10061-101H7_forward 1 3623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/throat%2c%20fetal%2c%20donor1.CNhs11770.10061-101H7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel throat, fetal, donor1_CNhs11770_10061-101H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10061-101H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThroatFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThroatFetalDonor1_CNhs11770_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7\ urlLabel FANTOM5 Details:\ ThroatFetalDonor1_CNhs11770_ctss_rev ThroatFetalD1- bigWig throat, fetal, donor1_CNhs11770_10061-101H7_reverse 0 3624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/throat%2c%20fetal%2c%20donor1.CNhs11770.10061-101H7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel throat, fetal, donor1_CNhs11770_10061-101H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10061-101H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThroatFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThroatFetalDonor1_CNhs11770_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7\ urlLabel FANTOM5 Details:\ ThroatFetalDonor1_CNhs11770_tpm_rev ThroatFetalD1- bigWig throat, fetal, donor1_CNhs11770_10061-101H7_reverse 1 3624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/throat%2c%20fetal%2c%20donor1.CNhs11770.10061-101H7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel throat, fetal, donor1_CNhs11770_10061-101H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10061-101H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThroatFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThroatFetalDonor1_CNhs11770_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7\ urlLabel FANTOM5 Details:\ ThymusAdultPool1_CNhs10633_ctss_fwd ThymusAdultPl1+ bigWig thymus, adult, pool1_CNhs10633_10027-101D9_forward 0 3625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thymus%2c%20adult%2c%20pool1.CNhs10633.10027-101D9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel thymus, adult, pool1_CNhs10633_10027-101D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10027-101D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThymusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThymusAdultPool1_CNhs10633_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9\ urlLabel FANTOM5 Details:\ ThymusAdultPool1_CNhs10633_tpm_fwd ThymusAdultPl1+ bigWig thymus, adult, pool1_CNhs10633_10027-101D9_forward 1 3625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thymus%2c%20adult%2c%20pool1.CNhs10633.10027-101D9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel thymus, adult, pool1_CNhs10633_10027-101D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10027-101D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThymusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThymusAdultPool1_CNhs10633_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9\ urlLabel FANTOM5 Details:\ ThymusAdultPool1_CNhs10633_ctss_rev ThymusAdultPl1- bigWig thymus, adult, pool1_CNhs10633_10027-101D9_reverse 0 3626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thymus%2c%20adult%2c%20pool1.CNhs10633.10027-101D9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel thymus, adult, pool1_CNhs10633_10027-101D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10027-101D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThymusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThymusAdultPool1_CNhs10633_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9\ urlLabel FANTOM5 Details:\ ThymusAdultPool1_CNhs10633_tpm_rev ThymusAdultPl1- bigWig thymus, adult, pool1_CNhs10633_10027-101D9_reverse 1 3626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thymus%2c%20adult%2c%20pool1.CNhs10633.10027-101D9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel thymus, adult, pool1_CNhs10633_10027-101D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10027-101D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThymusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThymusAdultPool1_CNhs10633_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9\ urlLabel FANTOM5 Details:\ ThymusFetalPool1_CNhs10650_ctss_fwd ThymusFetalPl1+ bigWig thymus, fetal, pool1_CNhs10650_10043-101F7_forward 0 3627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thymus%2c%20fetal%2c%20pool1.CNhs10650.10043-101F7.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel thymus, fetal, pool1_CNhs10650_10043-101F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10043-101F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThymusFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThymusFetalPool1_CNhs10650_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7\ urlLabel FANTOM5 Details:\ ThymusFetalPool1_CNhs10650_tpm_fwd ThymusFetalPl1+ bigWig thymus, fetal, pool1_CNhs10650_10043-101F7_forward 1 3627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thymus%2c%20fetal%2c%20pool1.CNhs10650.10043-101F7.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel thymus, fetal, pool1_CNhs10650_10043-101F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10043-101F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThymusFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThymusFetalPool1_CNhs10650_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7\ urlLabel FANTOM5 Details:\ ThymusFetalPool1_CNhs10650_ctss_rev ThymusFetalPl1- bigWig thymus, fetal, pool1_CNhs10650_10043-101F7_reverse 0 3628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thymus%2c%20fetal%2c%20pool1.CNhs10650.10043-101F7.hg19.ctss.rev.bw\ color 0,0,255\ longLabel thymus, fetal, pool1_CNhs10650_10043-101F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10043-101F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThymusFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThymusFetalPool1_CNhs10650_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7\ urlLabel FANTOM5 Details:\ ThymusFetalPool1_CNhs10650_tpm_rev ThymusFetalPl1- bigWig thymus, fetal, pool1_CNhs10650_10043-101F7_reverse 1 3628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thymus%2c%20fetal%2c%20pool1.CNhs10650.10043-101F7.hg19.tpm.rev.bw\ color 0,0,255\ longLabel thymus, fetal, pool1_CNhs10650_10043-101F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10043-101F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThymusFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThymusFetalPool1_CNhs10650_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7\ urlLabel FANTOM5 Details:\ ThyroidAdultPool1_CNhs10634_ctss_fwd ThyroidAdultPl1+ bigWig thyroid, adult, pool1_CNhs10634_10028-101E1_forward 0 3629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thyroid%2c%20adult%2c%20pool1.CNhs10634.10028-101E1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel thyroid, adult, pool1_CNhs10634_10028-101E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10028-101E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThyroidAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThyroidAdultPool1_CNhs10634_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1\ urlLabel FANTOM5 Details:\ ThyroidAdultPool1_CNhs10634_tpm_fwd ThyroidAdultPl1+ bigWig thyroid, adult, pool1_CNhs10634_10028-101E1_forward 1 3629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thyroid%2c%20adult%2c%20pool1.CNhs10634.10028-101E1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel thyroid, adult, pool1_CNhs10634_10028-101E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10028-101E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThyroidAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThyroidAdultPool1_CNhs10634_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1\ urlLabel FANTOM5 Details:\ ThyroidAdultPool1_CNhs10634_ctss_rev ThyroidAdultPl1- bigWig thyroid, adult, pool1_CNhs10634_10028-101E1_reverse 0 3630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thyroid%2c%20adult%2c%20pool1.CNhs10634.10028-101E1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel thyroid, adult, pool1_CNhs10634_10028-101E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10028-101E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThyroidAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThyroidAdultPool1_CNhs10634_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1\ urlLabel FANTOM5 Details:\ ThyroidAdultPool1_CNhs10634_tpm_rev ThyroidAdultPl1- bigWig thyroid, adult, pool1_CNhs10634_10028-101E1_reverse 1 3630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thyroid%2c%20adult%2c%20pool1.CNhs10634.10028-101E1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel thyroid, adult, pool1_CNhs10634_10028-101E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10028-101E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThyroidAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThyroidAdultPool1_CNhs10634_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1\ urlLabel FANTOM5 Details:\ ThyroidFetalDonor1_CNhs11769_ctss_fwd ThyroidFetalD1+ bigWig thyroid, fetal, donor1_CNhs11769_10060-101H6_forward 0 3631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thyroid%2c%20fetal%2c%20donor1.CNhs11769.10060-101H6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel thyroid, fetal, donor1_CNhs11769_10060-101H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10060-101H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThyroidFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThyroidFetalDonor1_CNhs11769_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6\ urlLabel FANTOM5 Details:\ ThyroidFetalDonor1_CNhs11769_tpm_fwd ThyroidFetalD1+ bigWig thyroid, fetal, donor1_CNhs11769_10060-101H6_forward 1 3631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thyroid%2c%20fetal%2c%20donor1.CNhs11769.10060-101H6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel thyroid, fetal, donor1_CNhs11769_10060-101H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10060-101H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThyroidFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThyroidFetalDonor1_CNhs11769_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6\ urlLabel FANTOM5 Details:\ ThyroidFetalDonor1_CNhs11769_ctss_rev ThyroidFetalD1- bigWig thyroid, fetal, donor1_CNhs11769_10060-101H6_reverse 0 3632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thyroid%2c%20fetal%2c%20donor1.CNhs11769.10060-101H6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel thyroid, fetal, donor1_CNhs11769_10060-101H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10060-101H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThyroidFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThyroidFetalDonor1_CNhs11769_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6\ urlLabel FANTOM5 Details:\ ThyroidFetalDonor1_CNhs11769_tpm_rev ThyroidFetalD1- bigWig thyroid, fetal, donor1_CNhs11769_10060-101H6_reverse 1 3632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/thyroid%2c%20fetal%2c%20donor1.CNhs11769.10060-101H6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel thyroid, fetal, donor1_CNhs11769_10060-101H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10060-101H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThyroidFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThyroidFetalDonor1_CNhs11769_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6\ urlLabel FANTOM5 Details:\ TongueAdult_CNhs12853_ctss_fwd TongueAdult+ bigWig tongue, adult_CNhs12853_10203-103F5_forward 0 3633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tongue%2c%20adult.CNhs12853.10203-103F5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel tongue, adult_CNhs12853_10203-103F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10203-103F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueAdult_CNhs12853_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5\ urlLabel FANTOM5 Details:\ TongueAdult_CNhs12853_tpm_fwd TongueAdult+ bigWig tongue, adult_CNhs12853_10203-103F5_forward 1 3633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tongue%2c%20adult.CNhs12853.10203-103F5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel tongue, adult_CNhs12853_10203-103F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10203-103F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueAdult_CNhs12853_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5\ urlLabel FANTOM5 Details:\ TongueAdult_CNhs12853_ctss_rev TongueAdult- bigWig tongue, adult_CNhs12853_10203-103F5_reverse 0 3634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tongue%2c%20adult.CNhs12853.10203-103F5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel tongue, adult_CNhs12853_10203-103F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10203-103F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueAdult_CNhs12853_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5\ urlLabel FANTOM5 Details:\ TongueAdult_CNhs12853_tpm_rev TongueAdult- bigWig tongue, adult_CNhs12853_10203-103F5_reverse 1 3634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tongue%2c%20adult.CNhs12853.10203-103F5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel tongue, adult_CNhs12853_10203-103F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10203-103F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueAdult_CNhs12853_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5\ urlLabel FANTOM5 Details:\ TongueEpidermisFungiformPapillaeDonor1_CNhs13460_ctss_fwd TongueEpidermisD1+ bigWig tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_forward 0 3635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tongue%20epidermis%20%28fungiform%20papillae%29%2c%20donor1.CNhs13460.10288-104F9.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10288-104F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueEpidermisD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueEpidermisFungiformPapillaeDonor1_CNhs13460_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9\ urlLabel FANTOM5 Details:\ TongueEpidermisFungiformPapillaeDonor1_CNhs13460_tpm_fwd TongueEpidermisD1+ bigWig tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_forward 1 3635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tongue%20epidermis%20%28fungiform%20papillae%29%2c%20donor1.CNhs13460.10288-104F9.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10288-104F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueEpidermisD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueEpidermisFungiformPapillaeDonor1_CNhs13460_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9\ urlLabel FANTOM5 Details:\ TongueEpidermisFungiformPapillaeDonor1_CNhs13460_ctss_rev TongueEpidermisD1- bigWig tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_reverse 0 3636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tongue%20epidermis%20%28fungiform%20papillae%29%2c%20donor1.CNhs13460.10288-104F9.hg19.ctss.rev.bw\ color 0,0,255\ longLabel tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10288-104F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueEpidermisD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueEpidermisFungiformPapillaeDonor1_CNhs13460_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9\ urlLabel FANTOM5 Details:\ TongueEpidermisFungiformPapillaeDonor1_CNhs13460_tpm_rev TongueEpidermisD1- bigWig tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_reverse 1 3636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tongue%20epidermis%20%28fungiform%20papillae%29%2c%20donor1.CNhs13460.10288-104F9.hg19.tpm.rev.bw\ color 0,0,255\ longLabel tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10288-104F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueEpidermisD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueEpidermisFungiformPapillaeDonor1_CNhs13460_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9\ urlLabel FANTOM5 Details:\ TongueFetalDonor1_CNhs11768_ctss_fwd TongueFetalD1+ bigWig tongue, fetal, donor1_CNhs11768_10059-101H5_forward 0 3637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tongue%2c%20fetal%2c%20donor1.CNhs11768.10059-101H5.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel tongue, fetal, donor1_CNhs11768_10059-101H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10059-101H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueFetalDonor1_CNhs11768_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5\ urlLabel FANTOM5 Details:\ TongueFetalDonor1_CNhs11768_tpm_fwd TongueFetalD1+ bigWig tongue, fetal, donor1_CNhs11768_10059-101H5_forward 1 3637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tongue%2c%20fetal%2c%20donor1.CNhs11768.10059-101H5.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel tongue, fetal, donor1_CNhs11768_10059-101H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10059-101H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueFetalDonor1_CNhs11768_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5\ urlLabel FANTOM5 Details:\ TongueFetalDonor1_CNhs11768_ctss_rev TongueFetalD1- bigWig tongue, fetal, donor1_CNhs11768_10059-101H5_reverse 0 3638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tongue%2c%20fetal%2c%20donor1.CNhs11768.10059-101H5.hg19.ctss.rev.bw\ color 0,0,255\ longLabel tongue, fetal, donor1_CNhs11768_10059-101H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10059-101H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueFetalDonor1_CNhs11768_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5\ urlLabel FANTOM5 Details:\ TongueFetalDonor1_CNhs11768_tpm_rev TongueFetalD1- bigWig tongue, fetal, donor1_CNhs11768_10059-101H5_reverse 1 3638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tongue%2c%20fetal%2c%20donor1.CNhs11768.10059-101H5.hg19.tpm.rev.bw\ color 0,0,255\ longLabel tongue, fetal, donor1_CNhs11768_10059-101H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10059-101H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueFetalDonor1_CNhs11768_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5\ urlLabel FANTOM5 Details:\ TonsilAdultPool1_CNhs10654_ctss_fwd TonsilAdultPl1+ bigWig tonsil, adult, pool1_CNhs10654_10047-101G2_forward 0 3639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tonsil%2c%20adult%2c%20pool1.CNhs10654.10047-101G2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel tonsil, adult, pool1_CNhs10654_10047-101G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10047-101G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TonsilAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TonsilAdultPool1_CNhs10654_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2\ urlLabel FANTOM5 Details:\ TonsilAdultPool1_CNhs10654_tpm_fwd TonsilAdultPl1+ bigWig tonsil, adult, pool1_CNhs10654_10047-101G2_forward 1 3639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tonsil%2c%20adult%2c%20pool1.CNhs10654.10047-101G2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel tonsil, adult, pool1_CNhs10654_10047-101G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10047-101G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TonsilAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TonsilAdultPool1_CNhs10654_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2\ urlLabel FANTOM5 Details:\ TonsilAdultPool1_CNhs10654_ctss_rev TonsilAdultPl1- bigWig tonsil, adult, pool1_CNhs10654_10047-101G2_reverse 0 3640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tonsil%2c%20adult%2c%20pool1.CNhs10654.10047-101G2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel tonsil, adult, pool1_CNhs10654_10047-101G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10047-101G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TonsilAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TonsilAdultPool1_CNhs10654_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2\ urlLabel FANTOM5 Details:\ TonsilAdultPool1_CNhs10654_tpm_rev TonsilAdultPl1- bigWig tonsil, adult, pool1_CNhs10654_10047-101G2_reverse 1 3640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/tonsil%2c%20adult%2c%20pool1.CNhs10654.10047-101G2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel tonsil, adult, pool1_CNhs10654_10047-101G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10047-101G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TonsilAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TonsilAdultPool1_CNhs10654_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2\ urlLabel FANTOM5 Details:\ TracheaAdultPool1_CNhs10635_ctss_fwd TracheaAdultPl1+ bigWig trachea, adult, pool1_CNhs10635_10029-101E2_forward 0 3641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/trachea%2c%20adult%2c%20pool1.CNhs10635.10029-101E2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel trachea, adult, pool1_CNhs10635_10029-101E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10029-101E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TracheaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TracheaAdultPool1_CNhs10635_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2\ urlLabel FANTOM5 Details:\ TracheaAdultPool1_CNhs10635_tpm_fwd TracheaAdultPl1+ bigWig trachea, adult, pool1_CNhs10635_10029-101E2_forward 1 3641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/trachea%2c%20adult%2c%20pool1.CNhs10635.10029-101E2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel trachea, adult, pool1_CNhs10635_10029-101E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10029-101E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TracheaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TracheaAdultPool1_CNhs10635_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2\ urlLabel FANTOM5 Details:\ TracheaAdultPool1_CNhs10635_ctss_rev TracheaAdultPl1- bigWig trachea, adult, pool1_CNhs10635_10029-101E2_reverse 0 3642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/trachea%2c%20adult%2c%20pool1.CNhs10635.10029-101E2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel trachea, adult, pool1_CNhs10635_10029-101E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10029-101E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TracheaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TracheaAdultPool1_CNhs10635_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2\ urlLabel FANTOM5 Details:\ TracheaAdultPool1_CNhs10635_tpm_rev TracheaAdultPl1- bigWig trachea, adult, pool1_CNhs10635_10029-101E2_reverse 1 3642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/trachea%2c%20adult%2c%20pool1.CNhs10635.10029-101E2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel trachea, adult, pool1_CNhs10635_10029-101E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10029-101E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TracheaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TracheaAdultPool1_CNhs10635_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2\ urlLabel FANTOM5 Details:\ TracheaFetalDonor1_CNhs11766_ctss_fwd TracheaFetalD1+ bigWig trachea, fetal, donor1_CNhs11766_10058-101H4_forward 0 3643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/trachea%2c%20fetal%2c%20donor1.CNhs11766.10058-101H4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel trachea, fetal, donor1_CNhs11766_10058-101H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10058-101H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TracheaFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TracheaFetalDonor1_CNhs11766_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4\ urlLabel FANTOM5 Details:\ TracheaFetalDonor1_CNhs11766_tpm_fwd TracheaFetalD1+ bigWig trachea, fetal, donor1_CNhs11766_10058-101H4_forward 1 3643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/trachea%2c%20fetal%2c%20donor1.CNhs11766.10058-101H4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel trachea, fetal, donor1_CNhs11766_10058-101H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10058-101H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TracheaFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TracheaFetalDonor1_CNhs11766_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4\ urlLabel FANTOM5 Details:\ TracheaFetalDonor1_CNhs11766_ctss_rev TracheaFetalD1- bigWig trachea, fetal, donor1_CNhs11766_10058-101H4_reverse 0 3644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/trachea%2c%20fetal%2c%20donor1.CNhs11766.10058-101H4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel trachea, fetal, donor1_CNhs11766_10058-101H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10058-101H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TracheaFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TracheaFetalDonor1_CNhs11766_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4\ urlLabel FANTOM5 Details:\ TracheaFetalDonor1_CNhs11766_tpm_rev TracheaFetalD1- bigWig trachea, fetal, donor1_CNhs11766_10058-101H4_reverse 1 3644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/trachea%2c%20fetal%2c%20donor1.CNhs11766.10058-101H4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel trachea, fetal, donor1_CNhs11766_10058-101H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10058-101H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TracheaFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TracheaFetalDonor1_CNhs11766_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4\ urlLabel FANTOM5 Details:\ UmbilicalCordFetalDonor1_CNhs11765_ctss_fwd UmbilicalCordFetalD1+ bigWig umbilical cord, fetal, donor1_CNhs11765_10057-101H3_forward 0 3645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/umbilical%20cord%2c%20fetal%2c%20donor1.CNhs11765.10057-101H3.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel umbilical cord, fetal, donor1_CNhs11765_10057-101H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10057-101H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UmbilicalCordFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UmbilicalCordFetalDonor1_CNhs11765_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3\ urlLabel FANTOM5 Details:\ UmbilicalCordFetalDonor1_CNhs11765_tpm_fwd UmbilicalCordFetalD1+ bigWig umbilical cord, fetal, donor1_CNhs11765_10057-101H3_forward 1 3645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/umbilical%20cord%2c%20fetal%2c%20donor1.CNhs11765.10057-101H3.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel umbilical cord, fetal, donor1_CNhs11765_10057-101H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10057-101H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UmbilicalCordFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UmbilicalCordFetalDonor1_CNhs11765_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3\ urlLabel FANTOM5 Details:\ UmbilicalCordFetalDonor1_CNhs11765_ctss_rev UmbilicalCordFetalD1- bigWig umbilical cord, fetal, donor1_CNhs11765_10057-101H3_reverse 0 3646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/umbilical%20cord%2c%20fetal%2c%20donor1.CNhs11765.10057-101H3.hg19.ctss.rev.bw\ color 0,0,255\ longLabel umbilical cord, fetal, donor1_CNhs11765_10057-101H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10057-101H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UmbilicalCordFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UmbilicalCordFetalDonor1_CNhs11765_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3\ urlLabel FANTOM5 Details:\ UmbilicalCordFetalDonor1_CNhs11765_tpm_rev UmbilicalCordFetalD1- bigWig umbilical cord, fetal, donor1_CNhs11765_10057-101H3_reverse 1 3646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3 regulation 0 bigDataUrl /gbdb/hg19/fantom5/umbilical%20cord%2c%20fetal%2c%20donor1.CNhs11765.10057-101H3.hg19.tpm.rev.bw\ color 0,0,255\ longLabel umbilical cord, fetal, donor1_CNhs11765_10057-101H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10057-101H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UmbilicalCordFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UmbilicalCordFetalDonor1_CNhs11765_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3\ urlLabel FANTOM5 Details:\ UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_ctss_fwd UniversalRnaNormalTissuesBiochainPl1+ bigWig Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_forward 0 3647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Universal%20RNA%20-%20Human%20Normal%20Tissues%20Biochain%2c%20pool1.CNhs10612.10007-101B4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10007-101B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UniversalRnaNormalTissuesBiochainPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4\ urlLabel FANTOM5 Details:\ UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_tpm_fwd UniversalRnaNormalTissuesBiochainPl1+ bigWig Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_forward 1 3647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Universal%20RNA%20-%20Human%20Normal%20Tissues%20Biochain%2c%20pool1.CNhs10612.10007-101B4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10007-101B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UniversalRnaNormalTissuesBiochainPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4\ urlLabel FANTOM5 Details:\ UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_ctss_rev UniversalRnaNormalTissuesBiochainPl1- bigWig Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_reverse 0 3648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Universal%20RNA%20-%20Human%20Normal%20Tissues%20Biochain%2c%20pool1.CNhs10612.10007-101B4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10007-101B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UniversalRnaNormalTissuesBiochainPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4\ urlLabel FANTOM5 Details:\ UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_tpm_rev UniversalRnaNormalTissuesBiochainPl1- bigWig Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_reverse 1 3648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Universal%20RNA%20-%20Human%20Normal%20Tissues%20Biochain%2c%20pool1.CNhs10612.10007-101B4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10007-101B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UniversalRnaNormalTissuesBiochainPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4\ urlLabel FANTOM5 Details:\ UrethraDonor2_CNhs13464_ctss_fwd UrethraD2+ bigWig Urethra, donor2_CNhs13464_10319-105A4_forward 0 3649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Urethra%2c%20donor2.CNhs13464.10319-105A4.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel Urethra, donor2_CNhs13464_10319-105A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10319-105A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UrethraD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UrethraDonor2_CNhs13464_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4\ urlLabel FANTOM5 Details:\ UrethraDonor2_CNhs13464_tpm_fwd UrethraD2+ bigWig Urethra, donor2_CNhs13464_10319-105A4_forward 1 3649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Urethra%2c%20donor2.CNhs13464.10319-105A4.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel Urethra, donor2_CNhs13464_10319-105A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10319-105A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UrethraD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UrethraDonor2_CNhs13464_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4\ urlLabel FANTOM5 Details:\ UrethraDonor2_CNhs13464_ctss_rev UrethraD2- bigWig Urethra, donor2_CNhs13464_10319-105A4_reverse 0 3650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Urethra%2c%20donor2.CNhs13464.10319-105A4.hg19.ctss.rev.bw\ color 0,0,255\ longLabel Urethra, donor2_CNhs13464_10319-105A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10319-105A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UrethraD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UrethraDonor2_CNhs13464_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4\ urlLabel FANTOM5 Details:\ UrethraDonor2_CNhs13464_tpm_rev UrethraD2- bigWig Urethra, donor2_CNhs13464_10319-105A4_reverse 1 3650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4 regulation 0 bigDataUrl /gbdb/hg19/fantom5/Urethra%2c%20donor2.CNhs13464.10319-105A4.hg19.tpm.rev.bw\ color 0,0,255\ longLabel Urethra, donor2_CNhs13464_10319-105A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10319-105A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UrethraD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UrethraDonor2_CNhs13464_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4\ urlLabel FANTOM5 Details:\ UterusAdultPool1_CNhs11676_ctss_fwd UterusAdultPl1+ bigWig uterus, adult, pool1_CNhs11676_10100-102D1_forward 0 3651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/uterus%2c%20adult%2c%20pool1.CNhs11676.10100-102D1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel uterus, adult, pool1_CNhs11676_10100-102D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10100-102D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UterusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UterusAdultPool1_CNhs11676_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1\ urlLabel FANTOM5 Details:\ UterusAdultPool1_CNhs11676_tpm_fwd UterusAdultPl1+ bigWig uterus, adult, pool1_CNhs11676_10100-102D1_forward 1 3651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/uterus%2c%20adult%2c%20pool1.CNhs11676.10100-102D1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel uterus, adult, pool1_CNhs11676_10100-102D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10100-102D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UterusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UterusAdultPool1_CNhs11676_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1\ urlLabel FANTOM5 Details:\ UterusAdultPool1_CNhs11676_ctss_rev UterusAdultPl1- bigWig uterus, adult, pool1_CNhs11676_10100-102D1_reverse 0 3652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/uterus%2c%20adult%2c%20pool1.CNhs11676.10100-102D1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel uterus, adult, pool1_CNhs11676_10100-102D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10100-102D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UterusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UterusAdultPool1_CNhs11676_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1\ urlLabel FANTOM5 Details:\ UterusAdultPool1_CNhs11676_tpm_rev UterusAdultPl1- bigWig uterus, adult, pool1_CNhs11676_10100-102D1_reverse 1 3652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/uterus%2c%20adult%2c%20pool1.CNhs11676.10100-102D1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel uterus, adult, pool1_CNhs11676_10100-102D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10100-102D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UterusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UterusAdultPool1_CNhs11676_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1\ urlLabel FANTOM5 Details:\ UterusFetalDonor1_CNhs11763_ctss_fwd UterusFetalD1+ bigWig uterus, fetal, donor1_CNhs11763_10055-101H1_forward 0 3653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/uterus%2c%20fetal%2c%20donor1.CNhs11763.10055-101H1.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel uterus, fetal, donor1_CNhs11763_10055-101H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10055-101H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UterusFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UterusFetalDonor1_CNhs11763_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1\ urlLabel FANTOM5 Details:\ UterusFetalDonor1_CNhs11763_tpm_fwd UterusFetalD1+ bigWig uterus, fetal, donor1_CNhs11763_10055-101H1_forward 1 3653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/uterus%2c%20fetal%2c%20donor1.CNhs11763.10055-101H1.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel uterus, fetal, donor1_CNhs11763_10055-101H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10055-101H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UterusFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UterusFetalDonor1_CNhs11763_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1\ urlLabel FANTOM5 Details:\ UterusFetalDonor1_CNhs11763_ctss_rev UterusFetalD1- bigWig uterus, fetal, donor1_CNhs11763_10055-101H1_reverse 0 3654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/uterus%2c%20fetal%2c%20donor1.CNhs11763.10055-101H1.hg19.ctss.rev.bw\ color 0,0,255\ longLabel uterus, fetal, donor1_CNhs11763_10055-101H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10055-101H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UterusFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UterusFetalDonor1_CNhs11763_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1\ urlLabel FANTOM5 Details:\ UterusFetalDonor1_CNhs11763_tpm_rev UterusFetalD1- bigWig uterus, fetal, donor1_CNhs11763_10055-101H1_reverse 1 3654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1 regulation 0 bigDataUrl /gbdb/hg19/fantom5/uterus%2c%20fetal%2c%20donor1.CNhs11763.10055-101H1.hg19.tpm.rev.bw\ color 0,0,255\ longLabel uterus, fetal, donor1_CNhs11763_10055-101H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10055-101H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UterusFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UterusFetalDonor1_CNhs11763_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1\ urlLabel FANTOM5 Details:\ VaginaAdult_CNhs12854_ctss_fwd VaginaAdult+ bigWig vagina, adult_CNhs12854_10204-103F6_forward 0 3655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/vagina%2c%20adult.CNhs12854.10204-103F6.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel vagina, adult_CNhs12854_10204-103F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10204-103F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel VaginaAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track VaginaAdult_CNhs12854_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6\ urlLabel FANTOM5 Details:\ VaginaAdult_CNhs12854_tpm_fwd VaginaAdult+ bigWig vagina, adult_CNhs12854_10204-103F6_forward 1 3655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/vagina%2c%20adult.CNhs12854.10204-103F6.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel vagina, adult_CNhs12854_10204-103F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10204-103F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel VaginaAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track VaginaAdult_CNhs12854_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6\ urlLabel FANTOM5 Details:\ VaginaAdult_CNhs12854_ctss_rev VaginaAdult- bigWig vagina, adult_CNhs12854_10204-103F6_reverse 0 3656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/vagina%2c%20adult.CNhs12854.10204-103F6.hg19.ctss.rev.bw\ color 0,0,255\ longLabel vagina, adult_CNhs12854_10204-103F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10204-103F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel VaginaAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track VaginaAdult_CNhs12854_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6\ urlLabel FANTOM5 Details:\ VaginaAdult_CNhs12854_tpm_rev VaginaAdult- bigWig vagina, adult_CNhs12854_10204-103F6_reverse 1 3656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6 regulation 0 bigDataUrl /gbdb/hg19/fantom5/vagina%2c%20adult.CNhs12854.10204-103F6.hg19.tpm.rev.bw\ color 0,0,255\ longLabel vagina, adult_CNhs12854_10204-103F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10204-103F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel VaginaAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track VaginaAdult_CNhs12854_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6\ urlLabel FANTOM5 Details:\ VeinAdult_CNhs12844_ctss_fwd VeinAdult+ bigWig vein, adult_CNhs12844_10191-103E2_forward 0 3657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/vein%2c%20adult.CNhs12844.10191-103E2.hg19.ctss.fwd.bw\ color 255,0,0\ longLabel vein, adult_CNhs12844_10191-103E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10191-103E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel VeinAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track VeinAdult_CNhs12844_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2\ urlLabel FANTOM5 Details:\ VeinAdult_CNhs12844_tpm_fwd VeinAdult+ bigWig vein, adult_CNhs12844_10191-103E2_forward 1 3657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/vein%2c%20adult.CNhs12844.10191-103E2.hg19.tpm.fwd.bw\ color 255,0,0\ longLabel vein, adult_CNhs12844_10191-103E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10191-103E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel VeinAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track VeinAdult_CNhs12844_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2\ urlLabel FANTOM5 Details:\ VeinAdult_CNhs12844_ctss_rev VeinAdult- bigWig vein, adult_CNhs12844_10191-103E2_reverse 0 3658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/vein%2c%20adult.CNhs12844.10191-103E2.hg19.ctss.rev.bw\ color 0,0,255\ longLabel vein, adult_CNhs12844_10191-103E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10191-103E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel VeinAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track VeinAdult_CNhs12844_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2\ urlLabel FANTOM5 Details:\ VeinAdult_CNhs12844_tpm_rev VeinAdult- bigWig vein, adult_CNhs12844_10191-103E2_reverse 1 3658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2 regulation 0 bigDataUrl /gbdb/hg19/fantom5/vein%2c%20adult.CNhs12844.10191-103E2.hg19.tpm.rev.bw\ color 0,0,255\ longLabel vein, adult_CNhs12844_10191-103E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10191-103E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel VeinAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track VeinAdult_CNhs12844_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2\ urlLabel FANTOM5 Details:\